# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 186 HTH_IclR PF09339.5 52 9.9e-07 17.7 0.2 1 1 4.6e-07 3.7e-06 15.9 0.0 15 40 155 180 151 181 0.85 # 6516 # 7073 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_7 - 186 HTH_22 PF13309.1 64 2.3e-05 13.6 1.5 1 1 1.2e-05 9.5e-05 11.6 0.1 35 63 156 179 143 180 0.76 # 6516 # 7073 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_7 - 186 HTH_40 PF14493.1 91 5.3e-05 12.8 0.6 1 1 2.1e-05 0.00017 11.2 0.1 7 32 152 177 147 183 0.89 # 6516 # 7073 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_7 - 186 HTH_38 PF13936.1 44 2.5e-07 19.6 1.4 1 1 5.9e-08 4.7e-07 18.7 0.0 9 41 147 179 145 182 0.93 # 6516 # 7073 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_7 - 186 HTH_Tnp_IS630 PF01710.11 120 7.5e-06 15.0 0.0 1 1 1.9e-06 1.6e-05 14.0 0.0 8 44 148 184 145 185 0.90 # 6516 # 7073 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_7 - 186 HTH_23 PF13384.1 50 3.5e-06 16.0 0.3 1 1 4.4e-07 3.5e-06 16.0 0.3 5 39 146 180 142 184 0.87 # 6516 # 7073 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_7 - 186 HTH_7 PF02796.10 45 1.9e-14 42.7 1.1 1 1 5.1e-15 4.1e-14 41.6 0.1 1 44 141 181 141 182 0.97 # 6516 # 7073 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_7 - 186 HTH_29 PF13551.1 112 8.5e-06 15.3 0.6 1 2 0.025 0.2 1.3 0.2 24 46 114 136 88 153 0.67 # 6516 # 7073 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_7 - 186 HTH_29 PF13551.1 112 8.5e-06 15.3 0.6 2 2 1e-05 8.2e-05 12.2 0.0 4 35 151 181 148 184 0.90 # 6516 # 7073 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_7 - 186 HTH_28 PF13518.1 52 1.1e-05 14.8 0.0 1 1 4.2e-06 3.4e-05 13.2 0.0 8 33 154 179 148 184 0.82 # 6516 # 7073 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_7 - 186 TrmB PF01978.14 68 4.4e-06 15.8 0.0 1 1 1.1e-06 9.1e-06 14.8 0.0 19 44 155 180 150 181 0.89 # 6516 # 7073 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_7 - 186 HTH_20 PF12840.2 61 1.6e-07 20.5 0.2 1 2 0.0037 0.03 3.6 0.0 33 52 8 27 4 28 0.91 # 6516 # 7073 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_7 - 186 HTH_20 PF12840.2 61 1.6e-07 20.5 0.2 2 2 9.1e-06 7.3e-05 12.0 0.1 3 43 110 177 108 180 0.91 # 6516 # 7073 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/b548929e-b08c-4aac-9de0-1cc5eab9fe7d # Target file: checkm_output/bins/pm1240/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1240/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b548929e-b08c-4aac-9de0-1cc5eab9fe7d checkm_output/bins/pm1240/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:38:15 2017 # [ok]