# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 103 HTH_DeoR PF08220.7 57 3.7e-06 14.9 0.1 1 1 1.5e-06 5.8e-06 14.3 0.1 8 46 6 43 4 45 0.86 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 HTH_38 PF13936.1 44 3.7e-09 24.5 0.1 1 2 6.3e-08 2.5e-07 18.7 0.2 17 40 9 32 4 34 0.90 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 HTH_38 PF13936.1 44 3.7e-09 24.5 0.1 2 2 0.0041 0.016 3.3 0.0 9 30 47 68 45 71 0.88 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 Sigma70_r4_2 PF08281.7 54 8.6e-10 26.5 0.1 1 2 1.2e-05 4.8e-05 11.2 0.0 26 47 12 33 7 35 0.88 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 Sigma70_r4_2 PF08281.7 54 8.6e-10 26.5 0.1 2 2 2.8e-06 1.1e-05 13.3 0.0 14 49 47 81 45 86 0.91 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 Sigma70_r4 PF04545.11 50 1.5e-05 12.7 0.0 1 1 9.7e-06 3.9e-05 11.4 0.0 18 41 10 33 6 35 0.91 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 KorB PF08535.5 93 5.3e-06 15.0 0.1 1 2 5.5e-06 2.2e-05 13.0 0.0 2 40 11 48 10 57 0.84 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 KorB PF08535.5 93 5.3e-06 15.0 0.1 2 2 0.073 0.29 -0.2 0.0 33 60 68 95 61 100 0.58 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 NUMOD1 PF07453.8 37 2.2e-06 15.9 0.0 1 1 3.9e-06 1.6e-05 13.2 0.0 20 35 16 31 14 33 0.91 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 HTH_3 PF01381.17 55 2.2e-07 19.1 0.0 1 1 1.3e-07 5.1e-07 18.0 0.0 5 30 9 33 5 38 0.87 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 HTH_23 PF13384.1 50 8.1e-11 29.8 0.1 1 2 2.6e-08 1e-07 19.9 0.0 16 38 10 33 5 43 0.86 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 HTH_23 PF13384.1 50 8.1e-11 29.8 0.1 2 2 0.00015 0.00061 8.0 0.0 4 35 45 76 42 85 0.87 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 HTH_29 PF13551.1 112 8.4e-06 14.4 0.3 1 1 5.7e-06 2.3e-05 13.0 0.2 10 46 10 46 5 53 0.80 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 HTH_28 PF13518.1 52 2.7e-08 22.2 0.1 1 1 1.5e-08 6e-08 21.1 0.1 10 33 10 33 5 50 0.83 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 HTH_24 PF13412.1 48 1.3e-05 13.0 0.1 1 2 1.7e-05 6.7e-05 10.7 0.0 15 38 10 33 6 34 0.88 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 HTH_24 PF13412.1 48 1.3e-05 13.0 0.1 2 2 0.096 0.38 -1.3 0.0 18 28 59 69 57 77 0.74 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 MerR PF00376.18 38 2.4e-05 12.3 0.0 1 1 1.1e-05 4.5e-05 11.4 0.0 3 19 16 32 14 35 0.89 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 HTH_17 PF12728.2 51 2.7e-07 19.2 0.1 1 1 1.7e-07 7e-07 17.9 0.1 2 28 13 42 12 53 0.78 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 Sigma70_ECF PF07638.6 185 3.3e-06 15.2 0.1 1 2 3.3e-05 0.00013 10.0 0.1 153 182 14 44 7 47 0.86 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_2 - 103 Sigma70_ECF PF07638.6 185 3.3e-06 15.2 0.1 2 2 0.0017 0.0069 4.4 0.0 138 168 45 75 38 90 0.78 # 1461 # 1769 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/e8e03f0c-c8cb-47d0-94c1-275dc2c1596f # Target file: checkm_output/bins/pm1230/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1230/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e8e03f0c-c8cb-47d0-94c1-275dc2c1596f checkm_output/bins/pm1230/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:38:04 2017 # [ok]