# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 284 RepC PF06504.6 283 4.5e-160 520.6 0.0 1 1 5e-161 5e-160 520.5 0.0 2 282 2 282 1 283 0.99 # 1276 # 2127 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.661 1_8 - 180 zf-ribbon_3 PF13248.1 26 0.021 3.9 12.3 1 2 0.00031 0.0031 6.5 5.7 4 25 75 101 72 102 0.63 # 4922 # 5461 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_8 - 180 zf-ribbon_3 PF13248.1 26 0.021 3.9 12.3 2 2 2.3e-05 0.00023 10.1 0.9 18 24 94 100 92 108 0.70 # 4922 # 5461 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_8 - 180 Ribosomal_S27e PF01667.12 55 1.9e-05 13.9 1.1 1 1 3.5e-06 3.5e-05 13.1 1.1 5 33 71 99 68 104 0.90 # 4922 # 5461 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_8 - 180 zinc_ribbon_4 PF13717.1 36 1e-05 14.9 0.2 1 2 0.00015 0.0015 8.0 0.1 2 14 73 85 73 87 0.84 # 4922 # 5461 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_8 - 180 zinc_ribbon_4 PF13717.1 36 1e-05 14.9 0.2 2 2 0.0017 0.017 4.6 0.0 5 15 95 105 94 114 0.81 # 4922 # 5461 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_3 - 280 AAA_25 PF13481.1 194 3.5e-38 120.6 0.0 1 1 5e-39 5e-38 120.1 0.0 14 192 12 183 5 185 0.88 # 450 # 1289 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.670 1_8 - 180 zinc_ribbon_5 PF13719.1 37 4.9e-06 15.8 0.1 1 2 9.4e-05 0.00094 8.5 0.0 2 14 73 85 72 87 0.84 # 4922 # 5461 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_8 - 180 zinc_ribbon_5 PF13719.1 37 4.9e-06 15.8 0.1 2 2 0.0013 0.013 4.8 0.0 5 15 95 105 94 115 0.81 # 4922 # 5461 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_8 - 180 Zn-ribbon_8 PF09723.5 42 0.00036 10.2 4.7 1 1 8.4e-05 0.00084 9.0 4.7 7 35 75 101 74 105 0.90 # 4922 # 5461 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_5 - 272 Pterin_bind PF00809.17 210 2.8e-61 196.1 0.0 1 1 3.4e-62 3.4e-61 195.9 0.0 1 209 10 216 10 217 0.98 # 2435 # 3250 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.608 1_8 - 180 NOB1_Zn_bind PF08772.6 73 4.1e-05 13.1 0.4 1 1 7.8e-06 7.8e-05 12.2 0.4 10 36 74 104 71 125 0.75 # 4922 # 5461 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/0c593810-8f90-4e90-9593-2a49b468c384 # Target file: checkm_output/bins/pm1202/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1202/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0c593810-8f90-4e90-9593-2a49b468c384 checkm_output/bins/pm1202/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:37:21 2017 # [ok]