# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 205 HTH_22 PF13309.1 64 3.1e-05 13.6 0.0 1 1 5.7e-06 6.3e-05 12.6 0.0 45 63 169 187 167 188 0.90 # 3667 # 4281 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_9 - 275 rve_3 PF13683.1 67 8.4e-06 15.1 0.0 1 1 1.6e-06 1.8e-05 14.1 0.0 2 35 142 175 141 184 0.87 # 6148 # 6972 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 1_6 - 205 HTH_8 PF02954.14 42 1.2e-06 17.9 0.7 1 2 0.011 0.12 1.9 0.3 2 11 118 127 117 128 0.86 # 3667 # 4281 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_6 - 205 HTH_8 PF02954.14 42 1.2e-06 17.9 0.7 2 2 2.3e-06 2.5e-05 13.6 0.0 21 37 169 185 159 188 0.81 # 3667 # 4281 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_6 - 205 TetR_N PF00440.18 47 3.6e-05 13.3 0.0 1 1 1.5e-05 0.00016 11.2 0.0 15 36 165 186 159 186 0.90 # 3667 # 4281 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_9 - 275 rve PF00665.21 120 5.6e-14 42.1 0.0 1 1 9.6e-14 1.1e-12 38.0 0.0 4 119 67 169 64 170 0.93 # 6148 # 6972 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 64 HTH_Tnp_1 PF01527.15 76 1.1e-18 56.9 0.1 1 1 2.2e-19 1.2e-18 56.7 0.1 2 47 18 63 17 63 0.97 # 5624 # 5815 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.474 1_6 - 205 HTH_Tnp_1 PF01527.15 76 5.8e-05 12.9 0.0 1 1 2.2e-05 0.00012 11.8 0.0 21 47 164 190 152 200 0.75 # 3667 # 4281 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_8 - 64 MerR_1 PF13411.1 69 3.6e-05 13.4 0.0 1 1 5.3e-06 5.8e-05 12.7 0.0 1 23 40 62 40 63 0.95 # 5624 # 5815 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.474 1_8 - 64 HTH_23 PF13384.1 50 1.1e-09 27.6 0.0 1 1 2.6e-10 1.4e-09 27.2 0.0 3 41 24 63 22 63 0.96 # 5624 # 5815 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.474 1_6 - 205 HTH_23 PF13384.1 50 1.9e-05 14.2 0.0 1 1 6.5e-06 3.6e-05 13.3 0.0 5 38 154 187 150 198 0.83 # 3667 # 4281 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_6 - 205 HTH_7 PF02796.10 45 2.9e-07 20.2 0.1 1 1 6.1e-08 6.7e-07 19.0 0.1 20 40 165 185 145 188 0.71 # 3667 # 4281 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_9 - 275 HTH_CodY PF08222.6 61 5.2e-05 12.4 0.0 1 2 0.00033 0.0037 6.5 0.0 24 49 149 174 146 177 0.90 # 6148 # 6972 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 275 HTH_CodY PF08222.6 61 5.2e-05 12.4 0.0 2 2 0.003 0.033 3.4 0.1 5 34 206 237 203 245 0.81 # 6148 # 6972 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 1_6 - 205 HTH_29 PF13551.1 112 2.6e-06 17.4 0.5 1 2 0.0097 0.053 3.5 0.2 37 61 130 153 123 165 0.78 # 3667 # 4281 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_6 - 205 HTH_29 PF13551.1 112 2.6e-06 17.4 0.5 2 2 2.9e-05 0.00016 11.7 0.0 11 36 163 190 155 203 0.73 # 3667 # 4281 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_8 - 64 HTH_29 PF13551.1 112 3.5e-05 13.8 0.3 1 2 0.049 0.27 1.3 0.1 52 68 18 33 3 38 0.60 # 5624 # 5815 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.474 1_8 - 64 HTH_29 PF13551.1 112 3.5e-05 13.8 0.3 2 2 2.1e-05 0.00012 12.1 0.0 8 36 36 63 28 63 0.84 # 5624 # 5815 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.474 1_8 - 64 HTH_28 PF13518.1 52 1e-08 25.0 1.1 1 1 1.9e-09 1.1e-08 24.9 0.0 1 36 27 63 27 63 0.97 # 5624 # 5815 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.474 1_6 - 205 HTH_28 PF13518.1 52 4.3e-05 13.4 0.0 1 1 1.8e-05 0.0001 12.2 0.0 14 33 168 187 155 188 0.73 # 3667 # 4281 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_6 - 205 Mga PF05043.8 87 5.3e-06 16.5 0.0 1 1 7.4e-07 8.1e-06 16.0 0.0 18 56 154 192 117 202 0.87 # 3667 # 4281 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_8 - 64 HTH_Tnp_ISL3 PF13542.1 52 4.4e-05 12.5 0.0 1 1 5.5e-06 6.1e-05 12.1 0.0 8 42 19 54 18 56 0.83 # 5624 # 5815 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.474 1_8 - 64 CENP-B_N PF04218.8 53 3.9e-08 22.5 0.2 1 1 5.1e-09 5.6e-08 22.0 0.2 4 44 20 61 18 62 0.86 # 5624 # 5815 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.474 1_6 - 205 HTH_26 PF13443.1 63 1.8e-05 14.8 0.0 1 1 4.1e-06 4.5e-05 13.5 0.0 1 31 154 187 154 196 0.88 # 3667 # 4281 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_6 - 205 HTH_11 PF08279.7 55 1.2e-06 18.0 0.0 1 1 2.8e-07 3.1e-06 16.7 0.0 14 37 165 188 157 200 0.86 # 3667 # 4281 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_6 - 205 HTH_20 PF12840.2 61 4.5e-05 13.1 0.2 1 1 1.1e-05 0.00012 11.7 0.0 27 45 169 187 154 189 0.88 # 3667 # 4281 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_9 - 275 HTH_21 PF13276.1 60 9.6e-19 57.1 0.8 1 1 1.7e-19 1.8e-18 56.2 0.8 19 57 7 49 3 58 0.84 # 6148 # 6972 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/e5a2d113-6f45-4ada-b7ac-089935191115 # Target file: checkm_output/bins/pm1196/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1196/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e5a2d113-6f45-4ada-b7ac-089935191115 checkm_output/bins/pm1196/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:37:05 2017 # [ok]