# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 97 HTH_IclR PF09339.5 52 7.7e-05 12.4 0.6 1 1 1.4e-05 0.00019 11.1 0.3 15 37 16 38 9 42 0.82 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_35 PF13693.1 78 1.8e-41 129.9 0.6 1 1 1.6e-42 2.1e-41 129.7 0.6 1 76 5 80 5 82 0.98 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_AsnC-type PF13404.1 42 7.9e-05 12.3 0.1 1 2 7.1e-05 0.00092 8.9 0.2 18 40 20 42 10 43 0.82 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_AsnC-type PF13404.1 42 7.9e-05 12.3 0.1 2 2 0.023 0.3 0.8 0.0 23 35 51 63 51 63 0.88 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_38 PF13936.1 44 2.7e-08 23.4 0.7 1 2 3.7e-07 4.9e-06 16.2 0.0 14 43 13 42 9 43 0.94 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_38 PF13936.1 44 2.7e-08 23.4 0.7 2 2 0.00065 0.0085 5.8 0.1 26 34 51 59 50 62 0.92 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_8 PF02954.14 42 6.1e-07 19.1 0.2 1 2 1.7e-06 2.2e-05 14.1 0.1 10 41 11 42 10 43 0.97 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_8 PF02954.14 42 6.1e-07 19.1 0.2 2 2 0.0051 0.066 2.9 0.0 25 36 52 63 51 63 0.93 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_Tnp_1 PF01527.15 76 3.3e-06 17.1 0.0 1 2 2.3e-06 3e-05 14.0 0.0 13 42 9 38 2 47 0.90 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_Tnp_1 PF01527.15 76 3.3e-06 17.1 0.0 2 2 0.027 0.35 1.0 0.0 29 40 51 62 50 78 0.93 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_AraC PF00165.18 42 8.9e-05 12.4 0.0 1 1 2.3e-05 0.0003 10.8 0.0 2 31 16 42 15 43 0.90 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_23 PF13384.1 50 3.7e-06 16.6 0.0 1 2 1.5e-05 0.0002 11.1 0.0 11 40 13 42 9 49 0.83 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_23 PF13384.1 50 3.7e-06 16.6 0.0 2 2 0.0034 0.044 3.7 0.0 23 35 51 63 48 63 0.91 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_7 PF02796.10 45 2.3e-05 14.3 0.0 1 1 4.2e-06 5.4e-05 13.1 0.0 12 38 10 36 2 45 0.90 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_29 PF13551.1 112 5.1e-05 13.5 0.1 1 1 9e-06 0.00012 12.3 0.1 5 36 13 43 11 61 0.85 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_28 PF13518.1 52 6.2e-07 19.5 0.0 1 2 4.1e-07 5.3e-06 16.5 0.0 5 35 11 42 9 43 0.83 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_28 PF13518.1 52 6.2e-07 19.5 0.0 2 2 0.035 0.45 0.8 0.0 18 29 51 62 45 63 0.89 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_24 PF13412.1 48 1.7e-06 17.5 0.2 1 1 2.7e-07 3.5e-06 16.5 0.0 8 40 11 42 10 44 0.92 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_10 PF04967.7 53 7.6e-05 12.4 0.0 1 1 1.1e-05 0.00014 11.5 0.0 24 47 20 43 17 46 0.90 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_3 - 89 SAP PF02037.22 35 0.0002 11.0 3.7 1 2 0.00063 0.0081 5.8 0.3 23 33 31 41 31 43 0.87 # 1314 # 1580 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_3 - 89 SAP PF02037.22 35 0.0002 11.0 3.7 2 2 0.00071 0.0092 5.7 0.2 3 16 67 80 66 80 0.91 # 1314 # 1580 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_2 - 97 HTH_Tnp_ISL3 PF13542.1 52 1.8e-05 14.0 0.2 1 1 1.4e-06 1.8e-05 14.0 0.2 20 51 12 43 11 44 0.91 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 HTH_26 PF13443.1 63 9.6e-05 12.7 0.0 1 1 2e-05 0.00026 11.3 0.0 5 31 14 40 11 44 0.88 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 MarR_2 PF12802.2 62 3.2e-06 16.8 0.5 1 2 1.2e-06 1.6e-05 14.6 0.2 9 45 10 43 9 43 0.90 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 97 MarR_2 PF12802.2 62 3.2e-06 16.8 0.5 2 2 0.045 0.58 0.0 0.0 27 37 51 61 51 62 0.85 # 582 # 872 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/b86f4cad-a5dc-47c5-8f72-2d46873cbcd1 # Target file: checkm_output/bins/pm119/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm119/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b86f4cad-a5dc-47c5-8f72-2d46873cbcd1 checkm_output/bins/pm119/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:36:52 2017 # [ok]