# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_94 - 228 Cons_hypoth95 PF03602.10 183 2.1e-05 16.9 0.0 1 2 0.00065 0.063 5.5 0.0 114 146 20 54 10 82 0.65 # 86607 # 87290 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_94 - 228 Cons_hypoth95 PF03602.10 183 2.1e-05 16.9 0.0 2 2 4e-05 0.0039 9.4 0.0 41 62 162 183 145 218 0.78 # 86607 # 87290 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_50 - 518 ABC_tran PF00005.22 137 7.3e-05 16.0 0.0 1 1 5.3e-06 0.00026 14.2 0.0 12 37 226 251 217 288 0.81 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_38 - 383 ABC_tran PF00005.22 137 0.00011 15.4 0.0 1 1 4.3e-06 0.00021 14.5 0.0 16 35 162 181 152 211 0.87 # 37210 # 38358 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_94 - 228 TIGR00095 TIGR00095 194 0.00029 13.1 0.0 1 2 0.0015 0.14 4.3 0.0 124 138 20 34 7 79 0.74 # 86607 # 87290 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_94 - 228 TIGR00095 TIGR00095 194 0.00029 13.1 0.0 2 2 0.00024 0.024 6.8 0.0 53 86 164 199 155 218 0.77 # 86607 # 87290 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_90 - 425 HHH_5 PF14520.1 60 0.00095 12.3 0.0 1 1 2.6e-05 0.0025 10.9 0.0 9 37 184 212 172 229 0.92 # 82946 # 84220 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_70 - 302 rve_3 PF13683.1 67 1e-19 62.7 0.1 1 1 3.7e-21 3.6e-19 61.0 0.0 2 67 216 281 215 281 0.98 # 66546 # 67451 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.550 1_3 - 314 HTH_38 PF13936.1 44 0.045 6.3 6.1 1 2 0.0042 0.41 3.2 5.5 5 30 245 287 243 290 0.77 # 1355 # 2296 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 1_3 - 314 HTH_38 PF13936.1 44 0.045 6.3 6.1 2 2 0.0059 0.57 2.7 0.2 10 27 281 298 277 305 0.59 # 1355 # 2296 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 1_38 - 383 MobB PF03205.9 140 1.8e-05 17.3 0.0 1 2 0.017 1.6 1.3 0.0 14 60 61 108 61 127 0.88 # 37210 # 38358 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_38 - 383 MobB PF03205.9 140 1.8e-05 17.3 0.0 2 2 3.1e-06 0.0003 13.4 0.0 5 26 162 183 160 193 0.90 # 37210 # 38358 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_50 - 518 AAA_19 PF13245.1 76 9.2e-05 15.1 0.0 1 1 2.6e-06 0.00026 13.7 0.0 10 46 226 259 218 268 0.79 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_86 - 215 CbiA PF01656.18 195 1.2e-09 30.7 0.1 1 1 1.8e-11 1.7e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 80102 # 80746 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_94 - 228 MethyltransfD12 PF02086.10 260 0.0003 13.1 0.0 1 2 0.011 1 1.5 0.0 174 188 17 31 8 90 0.84 # 86607 # 87290 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_94 - 228 MethyltransfD12 PF02086.10 260 0.0003 13.1 0.0 2 2 4e-05 0.0039 9.5 0.0 20 46 163 189 148 197 0.78 # 86607 # 87290 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_62 - 96 Sigma70_r4_2 PF08281.7 54 4.8e-08 25.3 0.1 1 1 1.4e-09 1.4e-07 23.8 0.0 10 54 21 64 12 64 0.83 # 60405 # 60692 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_70 - 302 rve PF00665.21 120 4.9e-25 80.9 0.1 1 1 1.1e-26 1.1e-24 79.7 0.0 3 119 123 243 121 244 0.96 # 66546 # 67451 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.550 1_50 - 518 AAA_23 PF13476.1 202 0.00012 15.3 0.2 1 1 9.7e-06 0.00047 13.4 0.0 20 38 226 244 208 249 0.84 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_38 - 383 AAA_23 PF13476.1 202 0.00021 14.5 0.0 1 1 7.3e-06 0.00036 13.8 0.0 19 40 157 178 142 209 0.83 # 37210 # 38358 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_66 - 283 TIGR00573 TIGR00573 217 1.1e-15 50.2 0.0 1 1 2e-17 2e-15 49.4 0.0 11 181 106 274 101 281 0.80 # 64373 # 65221 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_94 - 228 Methyltransf_26 PF13659.1 117 1.7e-11 37.1 0.0 1 2 4.2e-07 4.1e-05 16.5 0.0 57 114 7 71 2 74 0.72 # 86607 # 87290 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_94 - 228 Methyltransf_26 PF13659.1 117 1.7e-11 37.1 0.0 2 2 9.7e-08 9.4e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 86607 # 87290 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_50 - 518 AAA_30 PF13604.1 196 0.00031 13.2 0.0 1 1 5.8e-06 0.00056 12.4 0.0 4 44 211 251 209 276 0.84 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_69 - 122 CPSase_L_D3 PF02787.14 123 0.0005 12.7 0.2 1 2 0.0027 0.26 3.9 0.0 5 31 11 37 8 49 0.85 # 66223 # 66588 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_69 - 122 CPSase_L_D3 PF02787.14 123 0.0005 12.7 0.2 2 2 0.00031 0.03 7.0 0.1 42 80 76 112 73 117 0.89 # 66223 # 66588 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_69 - 122 HTH_Tnp_1 PF01527.15 76 3.6e-21 67.8 1.1 1 1 4.8e-23 4.7e-21 67.5 0.6 2 74 8 87 7 89 0.89 # 66223 # 66588 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_62 - 96 GerE PF00196.14 58 1.4e-06 20.5 0.0 1 1 1.9e-08 1.8e-06 20.1 0.0 3 49 21 67 19 72 0.89 # 60405 # 60692 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_10 - 764 TraG-D_C PF12696.2 128 5.1e-07 22.5 0.2 1 1 1.2e-08 1.1e-06 21.4 0.2 1 88 437 524 437 554 0.82 # 7971 # 10262 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_86 - 215 MipZ PF09140.6 261 2.3e-08 26.2 2.3 1 2 0.0008 0.078 4.8 0.5 7 25 8 26 2 38 0.71 # 80102 # 80746 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_86 - 215 MipZ PF09140.6 261 2.3e-08 26.2 2.3 2 2 9e-09 8.7e-07 21.1 0.1 70 133 45 108 25 125 0.84 # 80102 # 80746 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_94 - 228 UPF0020 PF01170.13 180 1.7e-05 17.3 0.0 1 2 0.00039 0.038 6.4 0.0 104 123 18 37 5 89 0.71 # 86607 # 87290 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_94 - 228 UPF0020 PF01170.13 180 1.7e-05 17.3 0.0 2 2 6.2e-05 0.006 9.0 0.0 28 54 163 189 158 221 0.67 # 86607 # 87290 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_56 - 198 Trp_repressor PF01371.14 88 0.00027 13.7 0.0 1 1 4.1e-06 0.0004 13.2 0.0 1 40 103 142 103 151 0.95 # 56291 # 56884 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.365 1_50 - 518 AAA PF00004.24 132 0.00024 14.2 0.1 1 3 0.064 6.2 -0.1 0.0 38 57 81 100 52 110 0.81 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_50 - 518 AAA PF00004.24 132 0.00024 14.2 0.1 2 3 0.00033 0.032 7.3 0.0 1 21 228 248 228 278 0.83 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_50 - 518 AAA PF00004.24 132 0.00024 14.2 0.1 3 3 0.017 1.7 1.8 0.0 9 66 442 508 436 515 0.64 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_94 - 228 N6_N4_Mtase PF01555.13 231 7.4e-37 119.9 0.0 1 1 3.4e-36 3.3e-34 111.2 0.0 1 228 21 200 21 203 0.89 # 86607 # 87290 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_88 - 327 Hydantoinase_A PF01968.13 290 6.8e-09 28.0 0.2 1 2 1.7e-06 0.00016 13.6 0.1 66 98 154 185 141 192 0.79 # 81555 # 82535 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_88 - 327 Hydantoinase_A PF01968.13 290 6.8e-09 28.0 0.2 2 2 5.5e-06 0.00053 11.9 0.0 211 263 244 296 201 301 0.86 # 81555 # 82535 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_50 - 518 AAA_16 PF13191.1 185 9e-05 15.4 0.0 1 1 6.4e-06 0.00031 13.6 0.0 8 51 213 252 212 301 0.78 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_38 - 383 AAA_16 PF13191.1 185 0.00028 13.7 0.0 1 1 1.2e-05 0.00059 12.7 0.0 27 52 160 188 148 282 0.82 # 37210 # 38358 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_38 - 383 AAA_22 PF13401.1 131 9.7e-06 18.6 0.0 1 1 4.9e-07 2.4e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 37210 # 38358 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_50 - 518 AAA_22 PF13401.1 131 0.00026 14.0 0.0 1 1 1.3e-05 0.00062 12.8 0.0 6 28 227 249 222 330 0.77 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 283 Methyltransf_27 PF13708.1 194 6.9e-67 217.6 0.0 1 1 9.6e-69 9.3e-67 217.2 0.0 2 194 85 278 84 278 0.96 # 3390 # 4238 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_50 - 518 AAA_29 PF13555.1 62 2.7e-05 16.5 0.0 1 1 1.1e-06 5.6e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_38 - 383 AAA_29 PF13555.1 62 3.7e-05 16.1 0.0 1 1 2.3e-06 0.00011 14.6 0.0 26 44 160 178 151 186 0.83 # 37210 # 38358 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_88 - 327 TIGR02350 TIGR02350 596 8.8e-05 13.5 0.6 1 3 0.083 8 -2.9 0.0 362 381 80 99 67 130 0.59 # 81555 # 82535 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_88 - 327 TIGR02350 TIGR02350 596 8.8e-05 13.5 0.6 2 3 0.00011 0.01 6.7 0.0 175 200 159 181 142 198 0.82 # 81555 # 82535 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_88 - 327 TIGR02350 TIGR02350 596 8.8e-05 13.5 0.6 3 3 0.00048 0.046 4.5 0.0 271 348 220 295 205 308 0.85 # 81555 # 82535 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_66 - 283 RNase_H_2 PF13482.1 164 0.00011 14.9 0.0 1 1 7.8e-06 0.00076 12.2 0.0 1 79 105 199 105 255 0.57 # 64373 # 65221 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_5 - 84 HTH_3 PF01381.17 55 2.7e-05 16.9 0.0 1 2 1e-06 9.9e-05 15.1 0.0 1 34 6 39 6 45 0.90 # 2559 # 2810 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_5 - 84 HTH_3 PF01381.17 55 2.7e-05 16.9 0.0 2 2 0.083 8.1 -0.7 0.0 39 52 67 80 65 83 0.66 # 2559 # 2810 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_57 - 99 YMF19 PF02326.10 86 0.00034 14.1 1.0 1 1 3.5e-06 0.00034 14.1 1.0 13 68 43 95 32 98 0.82 # 56881 # 57177 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.391 1_69 - 122 HTH_23 PF13384.1 50 2.2e-07 23.3 0.1 1 1 1.4e-08 4.5e-07 22.3 0.1 3 48 14 60 12 62 0.90 # 66223 # 66588 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_5 - 84 HTH_23 PF13384.1 50 3.5e-05 16.3 0.3 1 2 1.1e-05 0.00034 13.2 0.1 17 33 14 30 6 38 0.86 # 2559 # 2810 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_5 - 84 HTH_23 PF13384.1 50 3.5e-05 16.3 0.3 2 2 0.072 2.3 1.0 0.0 5 22 63 82 59 83 0.75 # 2559 # 2810 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_62 - 96 HTH_23 PF13384.1 50 3.5e-05 16.3 0.0 1 1 1.5e-06 4.9e-05 15.9 0.0 12 41 31 60 24 73 0.76 # 60405 # 60692 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_76 - 116 zf-DHHC PF01529.15 174 0.0016 10.7 4.5 1 1 1.2e-05 0.0011 11.2 3.1 88 151 32 108 30 113 0.77 # 72919 # 73266 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_3 - 314 HTH_7 PF02796.10 45 0.00043 13.0 0.0 1 1 1.1e-05 0.001 11.8 0.0 14 36 284 306 277 313 0.86 # 1355 # 2296 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 1_5 - 84 HTH_19 PF12844.2 64 7.6e-05 15.6 0.0 1 1 1.2e-06 0.00011 15.1 0.0 7 53 9 56 5 67 0.87 # 2559 # 2810 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_5 - 84 DUF1870 PF08965.5 118 0.00028 13.4 1.2 1 1 3.7e-06 0.00036 13.1 1.2 1 75 1 78 1 81 0.69 # 2559 # 2810 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_69 - 122 HTH_29 PF13551.1 112 2.2e-05 17.5 0.2 1 1 6.8e-07 3.3e-05 16.9 0.2 11 71 29 88 18 109 0.67 # 66223 # 66588 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_62 - 96 HTH_29 PF13551.1 112 0.00014 14.9 0.0 1 1 4.3e-06 0.00021 14.3 0.0 8 36 33 60 27 76 0.79 # 60405 # 60692 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_16 - 411 OrfB_Zn_ribbon PF07282.6 69 1.1e-27 88.4 2.4 1 1 1.7e-29 1.6e-27 87.9 0.6 1 67 311 378 311 380 0.98 # 14812 # 16044 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_66 - 283 DNA_pol_A_exo1 PF01612.15 176 2.2e-05 16.8 0.0 1 1 4.7e-07 4.6e-05 15.8 0.0 23 95 105 196 87 266 0.84 # 64373 # 65221 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_50 - 518 G-alpha PF00503.15 389 0.00061 11.3 0.0 1 2 0.054 5.3 -1.6 0.0 234 272 70 113 29 117 0.79 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_50 - 518 G-alpha PF00503.15 389 0.00061 11.3 0.0 2 2 1.9e-05 0.0018 9.8 0.0 58 87 225 254 214 325 0.84 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_4 - 57 UBA PF00627.26 37 0.00023 13.9 0.1 1 2 0.036 3.5 0.6 0.0 6 16 4 14 1 20 0.79 # 2358 # 2528 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 1_4 - 57 UBA PF00627.26 37 0.00023 13.9 0.1 2 2 1.5e-05 0.0014 11.4 0.0 6 22 24 40 21 40 0.86 # 2358 # 2528 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 1_33 - 231 OB_NTP_bind PF07717.11 114 0.00053 12.7 0.0 1 1 7.8e-06 0.00076 12.2 0.0 24 83 28 97 16 158 0.79 # 31446 # 32138 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_41 - 195 DNA_pol3_delta PF06144.8 172 2e-06 20.3 0.0 1 1 3e-08 2.9e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 40023 # 40607 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 1_10 - 764 TrwB_AAD_bind PF10412.4 386 2.2e-06 19.3 0.2 1 2 9.3e-05 0.0091 7.4 0.0 11 32 132 153 126 157 0.84 # 7971 # 10262 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_10 - 764 TrwB_AAD_bind PF10412.4 386 2.2e-06 19.3 0.2 2 2 3e-05 0.0029 9.0 0.1 247 332 440 525 427 555 0.88 # 7971 # 10262 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_86 - 215 TIGR01968 TIGR01968 261 7.5e-05 14.7 2.1 1 2 8.1e-06 0.00039 12.3 0.8 3 50 3 44 1 49 0.80 # 80102 # 80746 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_86 - 215 TIGR01968 TIGR01968 261 7.5e-05 14.7 2.1 2 2 0.017 0.82 1.5 0.0 101 140 63 102 49 123 0.75 # 80102 # 80746 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_88 - 327 TIGR01968 TIGR01968 261 0.00042 12.2 1.5 1 1 3.5e-05 0.0017 10.2 1.4 46 128 63 155 60 215 0.74 # 81555 # 82535 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_38 - 383 AAA_18 PF13238.1 129 1.5e-05 18.2 0.0 1 1 6e-07 2.9e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 37210 # 38358 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_50 - 518 AAA_18 PF13238.1 129 0.00031 13.9 0.0 1 1 2.1e-05 0.001 12.2 0.0 1 18 228 245 228 316 0.86 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_90 - 425 IMS_HHH PF11798.3 32 3e-08 26.3 0.2 1 1 9.1e-10 8.8e-08 24.9 0.2 3 32 172 201 170 201 0.93 # 82946 # 84220 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_66 - 283 TIGR01406 TIGR01406 231 2.1e-17 56.0 0.0 1 1 3.5e-19 3.4e-17 55.3 0.0 3 170 105 268 103 280 0.78 # 64373 # 65221 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_30 - 235 DUF3810 PF12725.2 318 0.00085 11.1 0.8 1 1 1.4e-05 0.0013 10.4 0.8 90 174 106 189 95 194 0.86 # 28456 # 29160 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.504 1_38 - 383 DUF87 PF01935.12 229 0.00059 12.5 0.0 1 1 1.1e-05 0.0011 11.7 0.0 28 56 162 191 161 192 0.88 # 37210 # 38358 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_69 - 122 HTH_28 PF13518.1 52 1.8e-08 27.2 0.5 1 1 7.8e-10 3.8e-08 26.2 0.0 1 43 17 60 17 63 0.93 # 66223 # 66588 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_62 - 96 HTH_28 PF13518.1 52 0.00014 14.7 0.0 1 1 8.7e-06 0.00042 13.2 0.0 9 38 33 62 26 75 0.86 # 60405 # 60692 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_16 - 411 TIGR00344 TIGR00344 847 2.8e-05 15.0 0.4 1 1 4.3e-07 4.2e-05 14.4 0.4 680 778 188 283 179 296 0.80 # 14812 # 16044 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_66 - 283 TIGR01298 TIGR01298 200 2e-06 20.2 1.1 1 1 6.7e-08 6.5e-06 18.6 1.1 93 189 167 267 99 275 0.82 # 64373 # 65221 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_5 - 84 HTH_31 PF13560.1 64 6.2e-07 22.5 2.0 1 2 1e-08 9.7e-07 21.9 1.2 3 43 3 43 2 57 0.86 # 2559 # 2810 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_5 - 84 HTH_31 PF13560.1 64 6.2e-07 22.5 2.0 2 2 0.1 9.7 -0.6 0.0 17 34 65 72 44 82 0.58 # 2559 # 2810 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_16 - 411 HTH_OrfB_IS605 PF12323.3 46 5.1e-21 66.7 0.0 1 1 1.1e-22 1.1e-20 65.7 0.0 1 45 3 49 1 50 0.92 # 14812 # 16044 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_50 - 518 T2SE PF00437.15 272 2.3e-41 134.3 0.1 1 1 9.6e-43 4.7e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_38 - 383 T2SE PF00437.15 272 7.8e-36 116.2 0.0 1 1 2.4e-37 1.2e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 37210 # 38358 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_88 - 327 StbA PF06406.6 318 1.2e-156 513.3 1.2 1 1 1.4e-158 1.3e-156 513.2 1.2 1 318 1 319 1 319 1.00 # 81555 # 82535 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_38 - 383 AAA_17 PF13207.1 121 1.8e-05 18.4 0.1 1 2 4.7e-06 0.00023 14.9 0.0 3 47 161 208 161 251 0.76 # 37210 # 38358 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_38 - 383 AAA_17 PF13207.1 121 1.8e-05 18.4 0.1 2 2 0.086 4.2 1.1 0.1 24 113 332 363 274 374 0.60 # 37210 # 38358 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_50 - 518 AAA_17 PF13207.1 121 2.1e-05 18.2 0.2 1 1 2.1e-06 0.0001 16.0 0.0 1 24 227 255 227 345 0.72 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_65 - 94 TIGR02211 TIGR02211 221 0.00011 14.3 0.0 1 1 1.2e-06 0.00012 14.2 0.0 109 167 9 72 2 87 0.80 # 64052 # 64333 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_38 - 383 AAA_25 PF13481.1 194 0.00019 13.7 0.0 1 1 7e-06 0.00034 12.9 0.0 24 58 148 182 124 207 0.78 # 37210 # 38358 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_50 - 518 AAA_25 PF13481.1 194 0.00027 13.2 0.1 1 2 8.7e-05 0.0042 9.3 0.0 25 65 217 260 200 270 0.72 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_50 - 518 AAA_25 PF13481.1 194 0.00027 13.2 0.1 2 2 0.039 1.9 0.7 0.0 153 190 297 337 292 340 0.74 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_50 - 518 AAA_14 PF13173.1 128 0.00076 12.3 0.0 1 1 3.7e-05 0.0036 10.1 0.0 5 30 228 254 225 286 0.80 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_86 - 215 VirC1 PF07015.6 231 0.00039 12.4 0.0 1 2 0.00073 0.071 5.0 0.0 3 29 3 29 1 36 0.81 # 80102 # 80746 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_86 - 215 VirC1 PF07015.6 231 0.00039 12.4 0.0 2 2 0.00052 0.05 5.5 0.0 87 190 77 181 59 194 0.70 # 80102 # 80746 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_62 - 96 HTH_Tnp_ISL3 PF13542.1 52 5.9e-05 15.1 0.0 1 1 1.9e-06 9.4e-05 14.5 0.0 29 50 38 59 34 60 0.89 # 60405 # 60692 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_69 - 122 HTH_Tnp_ISL3 PF13542.1 52 0.00034 12.7 1.6 1 1 1.4e-05 0.0007 11.7 0.1 7 42 8 44 8 46 0.92 # 66223 # 66588 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_69 - 122 CENP-B_N PF04218.8 53 3e-06 19.5 0.0 1 1 6e-08 5.8e-06 18.6 0.0 3 44 9 51 8 55 0.86 # 66223 # 66588 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_38 - 383 RNA_helicase PF00910.17 107 9.3e-05 15.5 0.0 1 1 1.9e-06 0.00018 14.5 0.0 2 28 161 187 160 205 0.83 # 37210 # 38358 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_38 - 383 ATP_bind_1 PF03029.12 238 4.5e-05 15.9 0.0 1 1 7.2e-07 7e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 37210 # 38358 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_50 - 518 DAP3 PF10236.4 309 0.0006 11.6 0.0 1 1 1.2e-05 0.0012 10.7 0.0 21 42 223 244 215 253 0.86 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_66 - 283 RNase_T PF00929.19 164 3.2e-26 85.4 0.0 1 1 4.3e-28 4.2e-26 85.0 0.0 1 163 105 262 105 263 0.95 # 64373 # 65221 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_25 - 1015 AAA_10 PF12846.2 304 1.6e-30 99.4 0.0 1 1 1.5e-31 3.7e-30 98.2 0.0 8 302 502 897 498 898 0.89 # 23304 # 26348 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.508 1_10 - 764 AAA_10 PF12846.2 304 2.5e-05 16.6 1.0 1 1 3.1e-06 7.6e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 7971 # 10262 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_50 - 518 AAA_10 PF12846.2 304 0.00022 13.6 0.0 1 1 1.7e-05 0.00041 12.7 0.0 4 30 228 256 226 320 0.81 # 49766 # 51319 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_38 - 383 AAA_10 PF12846.2 304 0.00049 12.4 0.0 1 1 4e-05 0.00098 11.4 0.0 2 21 158 177 157 196 0.83 # 37210 # 38358 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_3 - 314 Yae1_N PF09811.4 39 2.1e-05 16.9 7.2 1 1 3.7e-07 3.6e-05 16.2 7.2 3 26 253 276 252 284 0.94 # 1355 # 2296 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.538 1_70 - 302 HTH_21 PF13276.1 60 2.3e-19 62.1 1.9 1 2 2.7e-19 2.7e-17 55.5 0.6 6 57 49 106 45 109 0.79 # 66546 # 67451 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.550 1_70 - 302 HTH_21 PF13276.1 60 2.3e-19 62.1 1.9 2 2 0.0014 0.14 5.2 0.0 7 33 260 288 255 301 0.78 # 66546 # 67451 # 1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.550 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/931fbe9c-8788-4dad-8031-953e78860d23 # Target file: checkm_output/bins/pm1185/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1185/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/931fbe9c-8788-4dad-8031-953e78860d23 checkm_output/bins/pm1185/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:36:51 2017 # [ok]