# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_22 - 341 KaiC PF06745.8 227 0.00041 12.5 0.0 1 2 0.07 7.8 -1.5 0.0 137 180 23 63 15 80 0.72 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 2_22 - 341 KaiC PF06745.8 227 0.00041 12.5 0.0 2 2 1.3e-05 0.0014 10.8 0.0 16 81 149 210 138 253 0.72 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 7_1 - 106 HTH_IclR PF09339.5 52 4.9e-06 19.2 0.4 1 1 5.5e-07 2e-05 17.2 0.0 15 40 75 100 71 101 0.86 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 3_5 - 342 HTH_IclR PF09339.5 52 2.1e-05 17.1 0.1 1 1 1.5e-06 5.6e-05 15.8 0.1 15 40 14 39 10 40 0.86 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 2_16 - 190 HTH_IclR PF09339.5 52 0.00026 13.6 0.0 1 1 6.2e-05 0.0023 10.6 0.0 8 38 110 178 107 180 0.65 # 14395 # 14964 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_30 - 350 ABC_tran PF00005.22 137 1.9e-06 21.3 0.0 1 1 1.3e-07 3.5e-06 20.4 0.0 7 45 164 202 161 219 0.82 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_38 - 917 ABC_tran PF00005.22 137 5.8e-05 16.5 0.0 1 1 5.1e-06 0.00014 15.2 0.0 13 37 537 561 528 569 0.86 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 2_22 - 341 ABC_tran PF00005.22 137 0.00012 15.5 0.0 1 1 9.1e-06 0.00025 14.4 0.0 8 49 149 190 146 211 0.82 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 3_4 - 260 ABC_tran PF00005.22 137 0.00058 13.2 0.2 1 1 8.1e-05 0.0022 11.3 0.1 8 31 98 121 95 132 0.86 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_5 - 342 HTH_22 PF13309.1 64 9.9e-05 15.2 0.0 1 1 3.6e-06 0.0002 14.2 0.0 44 64 19 39 16 39 0.94 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 7_1 - 106 HTH_22 PF13309.1 64 0.00018 14.3 0.6 1 1 9.2e-06 0.00051 12.9 0.2 32 63 73 99 63 100 0.76 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_16 - 277 rve_3 PF13683.1 67 2.6e-34 109.7 0.2 1 1 1.1e-35 5.8e-34 108.6 0.2 1 67 189 255 189 255 0.99 # 13090 # 13920 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 3_5 - 342 rve_3 PF13683.1 67 6.3e-09 28.4 0.0 1 1 2.4e-10 1.3e-08 27.3 0.0 2 66 216 288 215 288 0.93 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 3_5 - 342 HTH_DeoR PF08220.7 57 0.00047 12.8 1.2 1 1 1e-05 0.0011 11.5 0.5 9 34 13 37 4 40 0.82 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 2_18 - 689 FtsK_SpoIIIE PF01580.13 205 6.8e-07 22.0 0.0 1 1 1.9e-07 7.1e-06 18.6 0.0 29 80 164 221 140 232 0.72 # 16360 # 18426 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_30 - 350 FtsK_SpoIIIE PF01580.13 205 0.00081 11.9 0.0 1 1 3.3e-05 0.0012 11.4 0.0 41 59 171 189 158 224 0.87 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_38 - 917 FtsK_SpoIIIE PF01580.13 205 0.00097 11.7 0.0 1 1 5.8e-05 0.0021 10.6 0.0 15 56 505 553 495 563 0.68 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 7_1 - 106 HTH_40 PF14493.1 91 0.0002 14.6 0.6 1 2 0.044 4.9 0.6 0.0 49 74 33 59 23 70 0.69 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 7_1 - 106 HTH_40 PF14493.1 91 0.0002 14.6 0.6 2 2 7.8e-06 0.00087 12.6 0.1 7 33 72 98 66 103 0.89 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 3_5 - 342 HTH_38 PF13936.1 44 4.7e-11 35.2 0.8 1 1 2.7e-12 1e-10 34.1 0.8 5 42 2 39 1 40 0.97 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_2 - 202 HTH_38 PF13936.1 44 5.5e-08 25.4 1.0 1 1 5.2e-09 1.9e-07 23.6 0.0 15 44 168 197 160 197 0.93 # 944 # 1549 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 7_1 - 106 HTH_38 PF13936.1 44 1.1e-06 21.3 1.4 1 1 6.4e-08 2.4e-06 20.1 0.0 9 41 67 99 65 102 0.93 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 2_16 - 190 DUF1492 PF07374.6 100 2e-05 17.8 0.5 1 1 5.2e-07 5.8e-05 16.3 0.1 57 95 143 182 103 187 0.74 # 14395 # 14964 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_30 - 350 MobB PF03205.9 140 7.1e-05 15.6 0.0 1 1 1.3e-06 0.00014 14.6 0.0 2 27 170 194 169 206 0.81 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_37 - 239 TBPIP PF07106.8 169 0.00023 13.8 11.4 1 2 8.5e-06 0.00094 11.8 0.5 79 137 35 93 26 100 0.89 # 29670 # 30386 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.526 1_37 - 239 TBPIP PF07106.8 169 0.00023 13.8 11.4 2 2 0.00043 0.048 6.3 4.8 85 149 149 214 114 232 0.76 # 29670 # 30386 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.526 4_5 - 269 HTH_8 PF02954.14 42 2.3e-09 29.8 0.2 1 1 8.8e-11 4.9e-09 28.7 0.2 6 41 230 265 226 266 0.92 # 3330 # 4136 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=15bp;gc_cont=0.482 3_5 - 342 HTH_8 PF02954.14 42 2.1e-05 17.1 0.6 1 1 6.6e-07 3.7e-05 16.3 0.1 12 37 11 36 5 40 0.91 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 3_4 - 260 AAA_19 PF13245.1 76 0.00075 12.3 0.2 1 1 2.6e-05 0.0029 10.5 0.0 11 35 103 126 95 157 0.81 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_13 - 228 CbiA PF01656.18 195 1e-11 37.6 0.4 1 1 2.7e-12 1e-10 34.4 0.4 1 193 13 187 13 189 0.76 # 11666 # 12349 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_39 - 228 CbiA PF01656.18 195 6.7e-05 15.4 3.0 1 1 4.2e-06 0.00015 14.2 3.0 3 174 18 168 16 186 0.67 # 32338 # 33021 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 3_4 - 260 CbiA PF01656.18 195 0.0011 11.5 0.0 1 1 3.8e-05 0.0014 11.1 0.0 3 42 105 145 104 254 0.75 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_2 - 202 Sigma70_r4_2 PF08281.7 54 1.4e-06 20.8 0.0 1 1 1.2e-07 4.5e-06 19.2 0.0 17 44 165 191 165 199 0.86 # 944 # 1549 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 3_5 - 342 Sigma70_r4_2 PF08281.7 54 1.9e-06 20.3 0.6 1 1 2.6e-07 9.7e-06 18.1 0.0 25 48 16 39 5 40 0.92 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_16 - 277 Sigma70_r4_2 PF08281.7 54 0.00023 13.7 0.0 1 1 1.4e-05 0.00053 12.5 0.0 20 49 2 31 1 31 0.95 # 13090 # 13920 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_16 - 277 rve PF00665.21 120 6.7e-25 80.6 0.0 1 1 7.7e-26 2.8e-24 78.6 0.0 2 120 103 218 102 218 0.93 # 13090 # 13920 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 3_5 - 342 rve PF00665.21 120 5.8e-23 74.4 0.0 1 1 5.8e-24 2.1e-22 72.5 0.0 3 119 118 243 117 244 0.96 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_10 - 235 rve PF00665.21 120 1.3e-12 40.9 0.1 1 2 0.045 1.6 1.9 0.0 78 102 27 49 6 54 0.84 # 8777 # 9481 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_10 - 235 rve PF00665.21 120 1.3e-12 40.9 0.1 2 2 6.9e-13 2.6e-11 36.8 0.0 9 119 75 182 70 183 0.89 # 8777 # 9481 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_4 - 260 AFG1_ATPase PF03969.11 362 0.00034 12.5 0.0 1 1 5.8e-06 0.00065 11.6 0.0 64 214 103 251 81 258 0.78 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_22 - 341 AAA_23 PF13476.1 202 2.8e-06 20.8 0.0 1 2 0.066 3.7 0.8 0.0 70 133 34 92 5 110 0.78 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 2_22 - 341 AAA_23 PF13476.1 202 2.8e-06 20.8 0.0 2 2 5.3e-07 3e-05 17.5 0.0 19 39 152 172 142 174 0.91 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_38 - 917 AAA_23 PF13476.1 202 0.00038 13.9 0.0 1 1 1.4e-05 0.00078 12.8 0.0 18 78 534 593 519 647 0.65 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 2_39 - 228 AAA_24 PF13479.1 213 0.00026 13.6 0.3 1 1 8.2e-06 0.00046 12.9 0.1 5 76 12 94 8 107 0.83 # 32338 # 33021 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 3_4 - 260 AAA_24 PF13479.1 213 0.0015 11.2 0.1 1 1 6.1e-05 0.0034 10.0 0.1 5 23 103 121 99 127 0.85 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_22 - 341 Zeta_toxin PF06414.7 201 0.00025 13.2 0.0 1 1 1.1e-05 0.00063 11.9 0.0 14 43 150 179 139 230 0.82 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_30 - 350 Zeta_toxin PF06414.7 201 0.0011 11.2 0.0 1 1 4.4e-05 0.0024 10.0 0.0 17 48 169 201 160 224 0.79 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_15 - 88 HTH_Tnp_1 PF01527.15 76 2.1e-22 72.0 0.1 1 1 8.9e-24 2.5e-22 71.8 0.1 4 76 2 71 1 71 0.97 # 12800 # 13063 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_16 - 190 HTH_Tnp_1 PF01527.15 76 6.1e-05 16.0 0.0 1 1 9.5e-06 0.00026 14.0 0.0 10 46 145 181 143 188 0.92 # 14395 # 14964 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 3_5 - 342 HTH_Tnp_1 PF01527.15 76 9e-05 15.5 0.2 1 2 0.00011 0.003 10.6 0.0 22 46 16 40 8 68 0.81 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 3_5 - 342 HTH_Tnp_1 PF01527.15 76 9e-05 15.5 0.2 2 2 0.044 1.2 2.2 0.0 35 58 284 311 275 330 0.73 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_10 - 235 HTH_Tnp_1 PF01527.15 76 0.00028 13.9 0.3 1 1 2.2e-05 0.0006 12.9 0.3 4 51 6 58 4 63 0.79 # 8777 # 9481 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 202 GerE PF00196.14 58 3.3e-05 16.3 0.0 1 1 1.5e-06 5.7e-05 15.5 0.0 11 35 166 190 165 201 0.88 # 944 # 1549 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 3_5 - 342 GerE PF00196.14 58 0.00038 12.9 0.0 1 1 1.9e-05 0.00069 12.0 0.0 16 40 15 39 4 40 0.87 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 7_1 - 106 GerE PF00196.14 58 0.00042 12.7 0.1 1 1 2.1e-05 0.00078 11.8 0.1 11 35 71 95 69 98 0.93 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_23 - 636 TraG-D_C PF12696.2 128 6.5e-10 32.0 0.0 1 1 1.8e-11 1e-09 31.4 0.0 7 94 406 496 400 527 0.77 # 17676 # 19583 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_38 - 917 TraG-D_C PF12696.2 128 0.0002 14.3 0.1 1 1 7.3e-06 0.0004 13.3 0.1 1 72 753 825 753 831 0.83 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 3_4 - 260 Bac_DnaA PF00308.13 219 5.7e-09 28.9 0.0 1 1 7.8e-11 8.6e-09 28.4 0.0 36 136 103 201 90 209 0.84 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_13 - 228 MipZ PF09140.6 261 2.1e-08 26.6 0.4 1 2 0.00026 0.015 7.4 0.0 2 22 12 32 11 36 0.92 # 11666 # 12349 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 1_13 - 228 MipZ PF09140.6 261 2.1e-08 26.6 0.4 2 2 2.1e-07 1.2e-05 17.6 0.1 85 140 74 127 48 165 0.81 # 11666 # 12349 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_39 - 228 MipZ PF09140.6 261 4.8e-08 25.4 5.4 1 2 0.00056 0.031 6.3 0.5 6 23 19 36 14 59 0.83 # 32338 # 33021 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 2_39 - 228 MipZ PF09140.6 261 4.8e-08 25.4 5.4 2 2 1.1e-08 6.4e-07 21.7 0.5 83 150 71 138 45 166 0.83 # 32338 # 33021 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_25 - 734 zinc-ribbons_6 PF07191.7 70 0.00077 12.3 1.0 1 1 1.4e-05 0.0016 11.3 1.0 2 32 633 663 632 682 0.84 # 20681 # 22882 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 4_2 - 421 DDE_Tnp_1 PF01609.16 213 8.8e-35 113.2 0.2 1 1 3.4e-36 1.9e-34 112.1 0.0 6 213 128 362 123 362 0.96 # 840 # 2102 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=12bp;gc_cont=0.340 3_2 - 440 DDE_Tnp_1 PF01609.16 213 4.5e-19 61.9 0.0 1 2 0.037 2.1 0.9 0.0 6 41 138 172 135 227 0.77 # 2500 # 3819 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.615 3_2 - 440 DDE_Tnp_1 PF01609.16 213 4.5e-19 61.9 0.0 2 2 7.3e-20 4.1e-18 58.7 0.0 6 213 264 433 259 433 0.85 # 2500 # 3819 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.615 2_2 - 80 DivIC PF04977.10 80 9.8e-06 18.1 0.6 1 1 1.2e-07 1.3e-05 17.7 0.6 12 50 32 70 28 76 0.92 # 686 # 925 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_5 - 342 Sigma70_r4 PF04545.11 50 0.00033 13.0 0.6 1 1 7.7e-06 0.00086 11.7 0.6 18 40 15 37 3 40 0.82 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 2_21 - 116 Phage_CI_repr PF07022.8 66 0.00046 13.3 0.1 1 1 8e-06 0.00089 12.4 0.0 3 59 8 64 6 71 0.86 # 19446 # 19793 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.466 3_4 - 260 AAA PF00004.24 132 2.4e-08 27.3 0.0 1 1 4.1e-10 4.5e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_25 - 276 KorB PF08535.5 93 0.00025 14.3 0.1 1 1 7.5e-06 0.00084 12.6 0.1 16 75 148 205 132 222 0.76 # 24766 # 25593 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 2_22 - 341 Herpes_ori_bp PF02399.10 824 0.0013 9.7 0.0 1 1 1.8e-05 0.002 9.1 0.0 47 78 150 180 137 184 0.85 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_16 - 277 rve_2 PF13333.1 52 1e-05 18.6 0.0 1 1 2.6e-07 2.9e-05 17.2 0.0 1 47 208 258 208 260 0.96 # 13090 # 13920 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 2_22 - 341 cobW PF02492.14 178 0.00027 13.5 0.0 1 1 6.8e-06 0.00076 12.0 0.0 3 29 155 180 153 197 0.71 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 2_22 - 341 AAA_16 PF13191.1 185 2.5e-06 20.6 0.0 1 1 1.7e-07 4.6e-06 19.8 0.0 20 57 148 185 138 228 0.75 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_38 - 917 AAA_16 PF13191.1 185 1e-05 18.6 0.0 1 1 3.1e-06 8.6e-05 15.6 0.0 19 166 530 769 520 785 0.60 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 3_4 - 260 AAA_16 PF13191.1 185 1.6e-05 18.0 2.4 1 1 4.8e-06 0.00013 15.0 0.1 23 51 100 128 86 149 0.80 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_30 - 350 AAA_16 PF13191.1 185 0.00053 13.0 0.0 1 1 3.1e-05 0.00085 12.4 0.0 25 51 169 195 164 261 0.86 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 3_4 - 260 AAA_22 PF13401.1 131 1.4e-06 21.6 0.0 1 2 1.7e-05 0.00046 13.4 0.1 4 28 101 125 98 148 0.75 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_4 - 260 AAA_22 PF13401.1 131 1.4e-06 21.6 0.0 2 2 0.0033 0.091 6.0 0.0 77 101 151 178 124 201 0.64 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_30 - 350 AAA_22 PF13401.1 131 3e-05 17.3 0.0 1 1 2.1e-06 5.7e-05 16.3 0.0 3 30 167 194 165 249 0.76 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_22 - 341 AAA_22 PF13401.1 131 5.6e-05 16.4 0.0 1 1 4.6e-06 0.00013 15.2 0.0 2 67 150 228 148 259 0.68 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 2_18 - 689 AAA_22 PF13401.1 131 0.00018 14.7 0.0 1 1 6.3e-05 0.0017 11.5 0.0 5 41 176 215 174 253 0.78 # 16360 # 18426 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 3_4 - 260 TIGR00362 TIGR00362 437 2.6e-10 32.6 0.0 1 1 3.3e-12 3.7e-10 32.1 0.0 140 240 104 202 94 210 0.89 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_5 - 342 NUMOD1 PF07453.8 37 2.2e-05 17.3 0.1 1 1 6.8e-07 7.6e-05 15.6 0.0 17 37 18 38 15 38 0.95 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_38 - 917 AAA_29 PF13555.1 62 1.7e-05 17.4 0.0 1 1 1.2e-06 4.4e-05 16.1 0.0 18 47 531 559 516 574 0.77 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 2_22 - 341 AAA_29 PF13555.1 62 0.00036 13.1 0.0 1 1 2.6e-05 0.00098 11.7 0.0 21 40 150 169 144 170 0.82 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_30 - 350 AAA_29 PF13555.1 62 0.00038 13.1 0.0 1 1 2.3e-05 0.00085 12.0 0.0 23 40 168 185 160 191 0.85 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 3_5 - 342 HTH_Tnp_Tc3_1 PF11427.3 50 1.6e-06 20.8 0.0 1 1 2.8e-08 3.1e-06 19.9 0.0 13 45 10 42 3 46 0.90 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 7_1 - 106 HTH_Tnp_IS630 PF01710.11 120 4.4e-05 16.2 0.0 1 1 1.3e-06 7.3e-05 15.5 0.0 8 44 68 104 63 105 0.91 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 3_5 - 342 HTH_Tnp_IS630 PF01710.11 120 0.00065 12.4 0.0 1 1 3.3e-05 0.0018 11.0 0.0 16 57 15 56 8 76 0.77 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 3_4 - 260 AAA_28 PF13521.1 163 0.00028 13.9 0.0 1 1 5e-06 0.00055 13.0 0.0 1 49 103 156 103 171 0.73 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_10 - 235 HTH_32 PF13565.1 77 1.6e-06 21.9 0.1 1 1 1.1e-07 6.3e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 8777 # 9481 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_16 - 277 HTH_32 PF13565.1 77 0.00031 14.6 1.3 1 2 5.5e-06 0.00031 14.6 1.3 24 76 27 76 10 77 0.73 # 13090 # 13920 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_16 - 277 HTH_32 PF13565.1 77 0.00031 14.6 1.3 2 2 0.029 1.6 2.7 0.3 8 60 75 121 72 130 0.57 # 13090 # 13920 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 3_5 - 342 GntR PF00392.16 64 0.00027 13.5 0.0 1 1 1.2e-05 0.0013 11.3 0.0 26 45 19 38 15 40 0.88 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 2_21 - 116 HTH_3 PF01381.17 55 8.6e-07 21.9 0.0 1 1 2.4e-08 1.4e-06 21.2 0.0 9 55 20 63 13 63 0.89 # 19446 # 19793 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.466 3_5 - 342 HTH_3 PF01381.17 55 0.00013 14.9 0.0 1 1 4.9e-06 0.00027 13.9 0.0 7 32 15 40 9 57 0.83 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 4_2 - 421 DDE_Tnp_1_4 PF13701.1 449 3.6e-27 87.6 3.5 1 2 0.0052 0.57 1.2 0.0 11 42 5 36 3 62 0.72 # 840 # 2102 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=12bp;gc_cont=0.340 4_2 - 421 DDE_Tnp_1_4 PF13701.1 449 3.6e-27 87.6 3.5 2 2 1.5e-28 1.6e-26 85.4 2.2 137 438 122 418 41 420 0.82 # 840 # 2102 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=12bp;gc_cont=0.340 3_5 - 342 HTH_23 PF13384.1 50 2.8e-09 29.5 0.4 1 1 1.5e-10 2.8e-09 29.5 0.4 13 39 13 39 8 44 0.91 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_15 - 88 HTH_23 PF13384.1 50 1.2e-07 24.3 0.2 1 1 1.5e-08 2.8e-07 23.1 0.1 8 45 11 46 3 56 0.88 # 12800 # 13063 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_2 - 202 HTH_23 PF13384.1 50 1.3e-07 24.2 0.2 1 1 7.3e-09 1.3e-07 24.2 0.2 10 42 166 198 160 201 0.92 # 944 # 1549 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_10 - 235 HTH_23 PF13384.1 50 7.4e-06 18.6 0.7 1 2 0.095 1.8 1.6 0.0 7 27 11 35 7 36 0.69 # 8777 # 9481 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_10 - 235 HTH_23 PF13384.1 50 7.4e-06 18.6 0.7 2 2 1.1e-05 0.00021 14.0 0.1 28 42 41 55 40 62 0.87 # 8777 # 9481 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 7_1 - 106 HTH_23 PF13384.1 50 9.7e-06 18.3 2.1 1 1 8.3e-07 1.5e-05 17.6 0.2 5 39 66 100 62 104 0.87 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_16 - 277 HTH_23 PF13384.1 50 0.00058 12.6 3.7 1 1 5.5e-05 0.001 11.8 0.0 12 37 2 28 1 38 0.86 # 13090 # 13920 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_43 - 305 BetR PF08667.5 147 1.9e-48 157.2 0.6 1 2 6.4e-50 7.1e-48 155.3 0.4 2 147 32 170 31 170 0.98 # 34970 # 35884 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.362 1_43 - 305 BetR PF08667.5 147 1.9e-48 157.2 0.6 2 2 0.074 8.2 -0.6 0.0 61 101 206 246 195 261 0.73 # 34970 # 35884 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.362 7_1 - 106 HTH_7 PF02796.10 45 8.1e-14 44.4 0.6 1 1 6.9e-15 1.9e-13 43.2 0.1 1 44 61 101 61 102 0.97 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 3_5 - 342 HTH_7 PF02796.10 45 1.2e-08 27.8 0.1 1 1 9.1e-10 2.5e-08 26.8 0.1 12 44 8 40 2 41 0.89 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_2 - 202 HTH_7 PF02796.10 45 1.7e-05 17.7 0.0 1 1 1.7e-06 4.9e-05 16.3 0.0 13 38 165 190 156 190 0.93 # 944 # 1549 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_16 - 190 HTH_7 PF02796.10 45 0.00024 14.0 0.2 1 1 3.3e-05 0.00092 12.2 0.1 2 44 142 181 141 182 0.83 # 14395 # 14964 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_21 - 116 HTH_19 PF12844.2 64 0.00015 14.9 0.0 1 1 3e-06 0.00033 13.8 0.0 18 61 23 66 22 68 0.94 # 19446 # 19793 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.466 1_15 - 88 HTH_29 PF13551.1 112 2e-06 21.0 0.1 1 1 9.2e-08 2.5e-06 20.7 0.1 3 37 12 45 11 85 0.81 # 12800 # 13063 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 3_5 - 342 HTH_29 PF13551.1 112 4.1e-06 20.0 1.1 1 1 4.9e-07 1.3e-05 18.4 0.0 7 35 13 40 8 72 0.86 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 7_1 - 106 HTH_29 PF13551.1 112 3.8e-05 16.9 0.9 1 2 0.051 1.4 2.2 0.3 24 54 34 63 18 70 0.64 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 7_1 - 106 HTH_29 PF13551.1 112 3.8e-05 16.9 0.9 2 2 1.4e-05 0.00038 13.7 0.0 4 35 71 101 68 105 0.90 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_2 - 202 HTH_29 PF13551.1 112 4.7e-05 16.6 0.5 1 2 0.028 0.79 3.0 0.0 51 88 43 87 25 101 0.62 # 944 # 1549 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_2 - 202 HTH_29 PF13551.1 112 4.7e-05 16.6 0.5 2 2 7.6e-05 0.0021 11.3 0.2 4 36 166 197 165 200 0.89 # 944 # 1549 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_10 - 235 DDE_Tnp_IS66 PF03050.9 271 4e-12 38.9 0.2 1 1 4.4e-14 4.9e-12 38.6 0.2 5 119 10 126 6 173 0.88 # 8777 # 9481 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_22 - 341 Arch_ATPase PF01637.13 234 8e-05 15.4 0.0 1 1 1.4e-06 0.00015 14.5 0.0 6 50 140 181 139 227 0.76 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 3_4 - 260 PhoH PF02562.11 205 3.5e-07 22.7 0.1 1 1 5e-09 5.5e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_4 - 260 AAA_5 PF07728.9 139 2e-05 17.4 0.0 1 1 9.1e-07 5.1e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_38 - 917 AAA_5 PF07728.9 139 0.00041 13.2 0.0 1 1 1.7e-05 0.00097 11.9 0.0 2 25 538 561 537 579 0.84 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 1_23 - 636 TrwB_AAD_bind PF10412.4 386 5.1e-10 31.5 0.0 1 2 7.1e-06 0.0002 13.1 0.0 11 53 185 227 180 240 0.88 # 17676 # 19583 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_23 - 636 TrwB_AAD_bind PF10412.4 386 5.1e-10 31.5 0.0 2 2 7.3e-07 2e-05 16.3 0.0 263 373 418 533 302 541 0.82 # 17676 # 19583 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 2_18 - 689 TrwB_AAD_bind PF10412.4 386 1.3e-08 26.8 0.0 1 2 1.7e-07 4.8e-06 18.4 0.0 10 58 170 226 162 232 0.88 # 16360 # 18426 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 2_18 - 689 TrwB_AAD_bind PF10412.4 386 1.3e-08 26.8 0.0 2 2 0.00099 0.028 6.0 0.0 261 321 555 607 552 619 0.85 # 16360 # 18426 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_30 - 350 TrwB_AAD_bind PF10412.4 386 0.00072 11.2 0.0 1 1 3.4e-05 0.00095 10.8 0.0 17 43 170 196 153 224 0.79 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_38 - 917 TrwB_AAD_bind PF10412.4 386 0.00075 11.2 0.0 1 1 0.00011 0.0031 9.2 0.0 15 37 535 557 525 585 0.75 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 1_13 - 228 TIGR01968 TIGR01968 261 0.00016 13.8 0.1 1 2 1.7e-05 0.0019 10.3 0.1 2 23 11 32 10 37 0.91 # 11666 # 12349 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 1_13 - 228 TIGR01968 TIGR01968 261 0.00016 13.8 0.1 2 2 0.0075 0.83 1.6 0.0 99 177 75 158 64 215 0.58 # 11666 # 12349 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_22 - 341 AAA_18 PF13238.1 129 8.8e-05 15.9 0.0 1 1 2e-06 0.00022 14.6 0.0 2 23 156 179 156 225 0.76 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 3_2 - 440 DDE_Tnp_1_6 PF13751.1 125 4.4e-19 61.8 0.2 1 1 4e-21 4.4e-19 61.8 0.2 52 125 364 437 356 437 0.92 # 2500 # 3819 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.615 3_5 - 342 HTH_Tnp_IS1 PF12759.2 46 2.1e-05 17.0 0.1 1 1 3.6e-07 4e-05 16.1 0.1 17 43 13 39 3 41 0.83 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 3_4 - 260 DUF258 PF03193.11 161 0.00023 13.4 0.0 1 1 7.3e-06 0.00041 12.6 0.0 26 59 92 125 80 153 0.82 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_22 - 341 DUF258 PF03193.11 161 0.00065 12.0 0.0 1 1 2.1e-05 0.0011 11.2 0.0 22 69 138 186 123 196 0.81 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 2_18 - 689 DUF87 PF01935.12 229 3.7e-27 88.6 0.0 1 2 4e-25 1.5e-23 76.9 0.0 8 153 160 306 153 387 0.84 # 16360 # 18426 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 2_18 - 689 DUF87 PF01935.12 229 3.7e-27 88.6 0.0 2 2 0.00045 0.017 8.0 0.1 189 229 467 507 418 507 0.78 # 16360 # 18426 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_23 - 636 DUF87 PF01935.12 229 4.3e-06 19.7 0.0 1 1 2.1e-07 7.6e-06 18.9 0.0 8 63 174 228 169 273 0.86 # 17676 # 19583 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_30 - 350 DUF87 PF01935.12 229 0.00026 13.9 0.0 1 1 1.2e-05 0.00043 13.2 0.0 28 47 173 192 152 201 0.89 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_15 - 88 HTH_28 PF13518.1 52 1e-08 28.2 0.0 1 1 6.5e-10 1.4e-08 27.7 0.0 4 37 12 45 9 57 0.92 # 12800 # 13063 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_2 - 202 HTH_28 PF13518.1 52 2.8e-08 26.7 0.4 1 1 3.1e-09 6.8e-08 25.5 0.4 4 38 165 199 165 201 0.92 # 944 # 1549 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 3_5 - 342 HTH_28 PF13518.1 52 1.5e-06 21.3 1.6 1 1 9.6e-08 2.1e-06 20.7 0.3 9 34 14 39 10 40 0.89 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_10 - 235 HTH_28 PF13518.1 52 6.7e-05 16.0 1.2 1 1 1.3e-05 0.00028 14.0 1.2 22 36 40 54 13 55 0.76 # 8777 # 9481 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 7_1 - 106 HTH_28 PF13518.1 52 7.1e-05 15.9 0.0 1 1 8e-06 0.00018 14.6 0.0 8 33 74 99 68 104 0.82 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 3_5 - 342 DUF2089 PF09862.4 113 0.00015 14.7 0.0 1 1 2.3e-06 0.00025 13.9 0.0 34 70 2 38 1 45 0.94 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_2 - 202 HTH_24 PF13412.1 48 2.7e-05 16.6 0.0 1 1 1.6e-06 5.8e-05 15.6 0.0 16 40 172 196 168 196 0.89 # 944 # 1549 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 3_5 - 342 HTH_24 PF13412.1 48 5.5e-05 15.6 0.1 1 1 2.7e-06 0.0001 14.8 0.1 11 39 12 39 10 40 0.87 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_16 - 277 HTH_24 PF13412.1 48 0.00071 12.1 0.2 1 1 5.1e-05 0.0019 10.7 0.0 17 36 7 27 1 28 0.86 # 13090 # 13920 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 3_4 - 260 Sigma54_activ_2 PF14532.1 138 0.00044 13.4 0.0 1 1 6.3e-06 0.0007 12.7 0.0 9 64 87 144 84 229 0.70 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_5 - 342 HTH_30 PF13556.1 59 1.9e-05 17.3 0.4 1 1 4.1e-07 4.6e-05 16.1 0.4 6 34 11 39 10 40 0.90 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_2 - 202 HTH_10 PF04967.7 53 0.00048 12.8 0.0 1 1 2.6e-05 0.0014 11.3 0.0 27 46 177 196 173 199 0.86 # 944 # 1549 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 3_5 - 342 HTH_10 PF04967.7 53 0.00071 12.3 0.0 1 1 3.1e-05 0.0017 11.0 0.0 25 45 19 39 16 41 0.92 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_30 - 350 DEAD PF00270.24 169 0.0013 11.2 0.0 1 1 2.1e-05 0.0023 10.5 0.0 14 33 168 187 156 241 0.83 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_21 - 116 HTH_31 PF13560.1 64 0.00018 14.8 0.0 1 1 1.9e-05 0.001 12.3 0.0 19 60 22 62 6 64 0.85 # 19446 # 19793 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.466 1_2 - 202 HTH_31 PF13560.1 64 0.0026 11.0 4.3 1 2 0.046 2.5 1.5 0.1 15 38 23 56 16 77 0.73 # 944 # 1549 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_2 - 202 HTH_31 PF13560.1 64 0.0026 11.0 4.3 2 2 9.8e-05 0.0055 10.0 0.5 11 39 170 198 142 201 0.90 # 944 # 1549 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 3_5 - 342 HTH_36 PF13730.1 55 7.7e-05 15.9 0.0 1 1 1.4e-06 0.00016 14.9 0.0 27 47 19 39 11 40 0.93 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_30 - 350 T2SE PF00437.15 272 2e-49 160.9 0.0 1 1 7e-51 2.6e-49 160.5 0.0 7 267 26 318 21 322 0.93 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_22 - 341 T2SE PF00437.15 272 9.4e-48 155.4 0.0 1 1 2.9e-49 1.1e-47 155.2 0.0 7 270 31 302 25 304 0.94 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_38 - 917 T2SE PF00437.15 272 0.00031 12.7 0.0 1 1 1.6e-05 0.00059 11.8 0.0 114 155 512 562 379 565 0.67 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 1_30 - 350 NACHT PF05729.7 166 8.8e-05 15.2 0.0 1 1 5.7e-06 0.00021 14.0 0.0 2 22 170 190 169 195 0.89 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 3_4 - 260 NACHT PF05729.7 166 0.00014 14.6 0.0 1 1 6.2e-06 0.00023 13.9 0.0 3 49 104 151 102 200 0.81 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_22 - 341 NACHT PF05729.7 166 0.00096 11.9 0.0 1 1 5.5e-05 0.002 10.8 0.0 3 28 155 180 153 233 0.64 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 2_22 - 341 UPF0079 PF02367.12 123 3.2e-06 19.9 0.0 1 1 4.9e-08 5.4e-06 19.1 0.0 7 44 144 181 138 186 0.85 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 2_22 - 341 AAA_17 PF13207.1 121 1.9e-05 18.5 0.0 1 1 6.9e-07 3.8e-05 17.6 0.0 1 64 154 226 154 275 0.61 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 3_4 - 260 AAA_17 PF13207.1 121 0.00043 14.2 0.0 1 1 1.3e-05 0.00072 13.4 0.0 2 26 104 131 103 216 0.74 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_44 - 328 Glyco_transf_9 PF01075.12 247 0.00031 13.0 0.0 1 2 0.057 6.4 -1.1 0.0 104 137 184 217 147 224 0.81 # 35888 # 36871 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_44 - 328 Glyco_transf_9 PF01075.12 247 0.00031 13.0 0.0 2 2 1.1e-05 0.0012 11.1 0.0 175 224 243 293 240 315 0.75 # 35888 # 36871 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 3_4 - 260 AAA_25 PF13481.1 194 8e-07 21.7 0.1 1 1 2.2e-08 2.5e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_30 - 350 Pox_A32 PF04665.7 241 6.4e-06 18.6 0.1 1 1 8.5e-08 9.5e-06 18.1 0.1 16 61 171 221 161 236 0.81 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 3_4 - 260 AAA_14 PF13173.1 128 3.9e-07 23.1 0.0 1 2 1.7e-08 1.9e-06 20.9 0.0 3 97 102 203 100 219 0.64 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_4 - 260 AAA_14 PF13173.1 128 3.9e-07 23.1 0.0 2 2 0.048 5.3 0.0 0.0 14 46 215 247 212 257 0.80 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_13 - 228 VirC1 PF07015.6 231 4.1e-05 15.8 0.0 1 1 4.8e-07 5.4e-05 15.4 0.0 9 218 18 226 11 227 0.76 # 11666 # 12349 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 1_11 - 335 Transposase_20 PF02371.11 87 1.2e-24 79.3 0.2 1 1 2.3e-26 2.6e-24 78.3 0.2 2 78 210 286 209 296 0.94 # 9608 # 10612 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 3_5 - 342 HTH_Tnp_ISL3 PF13542.1 52 3.3e-05 16.1 0.3 1 1 1.4e-06 7.8e-05 14.9 0.3 23 50 13 40 9 40 0.87 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_2 - 202 HTH_Tnp_ISL3 PF13542.1 52 4.6e-05 15.7 0.2 1 1 2e-06 0.00011 14.4 0.2 29 51 175 197 166 198 0.85 # 944 # 1549 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_2 - 202 CENP-B_N PF04218.8 53 0.00017 14.0 0.0 1 1 7.9e-06 0.00044 12.8 0.0 21 45 172 196 165 199 0.87 # 944 # 1549 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 7_1 - 106 CENP-B_N PF04218.8 53 0.00041 12.8 0.1 1 1 4.5e-05 0.0025 10.3 0.1 26 47 82 103 67 104 0.86 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_23 - 636 T4SS-DNA_transf PF02534.9 469 7.9e-08 24.3 0.0 1 2 1.5e-05 0.0016 10.0 0.0 44 84 181 231 128 272 0.76 # 17676 # 19583 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_23 - 636 T4SS-DNA_transf PF02534.9 469 7.9e-08 24.3 0.0 2 2 4e-06 0.00045 11.9 0.0 252 400 350 498 337 512 0.75 # 17676 # 19583 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_30 - 350 RNA_helicase PF00910.17 107 0.00033 13.9 0.0 1 1 4.9e-06 0.00055 13.2 0.0 2 36 172 211 171 233 0.78 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 3_4 - 260 NTPase_1 PF03266.10 168 0.00026 13.8 0.1 1 2 0.0015 0.17 4.6 0.1 2 30 104 132 103 143 0.82 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_4 - 260 NTPase_1 PF03266.10 168 0.00026 13.8 0.1 2 2 0.0003 0.033 6.9 0.0 87 108 155 176 141 202 0.77 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_30 - 350 ATP_bind_1 PF03029.12 238 0.00023 13.8 0.0 1 1 3.1e-06 0.00035 13.2 0.0 1 23 173 195 173 202 0.89 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_10 - 235 DDE_Tnp_IS240 PF13610.1 140 3.4e-52 169.2 0.0 1 1 8.6e-54 4.8e-52 168.7 0.0 4 139 75 212 73 213 0.99 # 8777 # 9481 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_16 - 277 DDE_Tnp_IS240 PF13610.1 140 0.00099 12.2 0.0 1 1 2.6e-05 0.0014 11.6 0.0 59 139 166 247 151 248 0.76 # 13090 # 13920 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_15 - 88 HTH_26 PF13443.1 63 0.00032 14.0 0.2 1 2 0.00013 0.0047 10.3 0.0 7 33 17 43 15 59 0.84 # 12800 # 13063 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_15 - 88 HTH_26 PF13443.1 63 0.00032 14.0 0.2 2 2 0.066 2.4 1.5 0.4 1 20 64 83 64 86 0.85 # 12800 # 13063 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_16 - 190 HTH_26 PF13443.1 63 0.00053 13.3 0.1 1 1 3.9e-05 0.0014 11.9 0.1 6 34 154 182 149 187 0.87 # 14395 # 14964 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 7_1 - 106 HTH_26 PF13443.1 63 0.00071 12.9 0.0 1 1 3.2e-05 0.0012 12.2 0.0 6 34 74 102 70 105 0.90 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_25 - 734 Toprim_Crpt PF13342.1 62 3.2e-18 58.2 0.4 1 1 8.8e-20 9.7e-18 56.7 0.4 1 61 652 715 652 716 0.93 # 20681 # 22882 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 2_22 - 341 KAP_NTPase PF07693.9 325 7.6e-05 14.8 0.0 1 1 1.6e-06 0.00018 13.6 0.0 18 53 150 183 135 225 0.78 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 3_5 - 342 HTH_17 PF12728.2 51 0.00016 14.9 0.0 1 1 8.7e-06 0.00048 13.4 0.0 4 24 20 40 19 50 0.88 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 7_1 - 106 HTH_17 PF12728.2 51 0.00087 12.6 1.0 1 2 0.027 1.5 2.3 0.1 25 43 53 71 39 74 0.80 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 7_1 - 106 HTH_17 PF12728.2 51 0.00087 12.6 1.0 2 2 0.00022 0.012 9.0 0.1 6 23 83 100 81 103 0.87 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 3_5 - 342 HTH_11 PF08279.7 55 6.1e-06 18.9 0.4 1 1 2.3e-07 1.3e-05 17.9 0.4 4 37 6 39 3 40 0.81 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_15 - 88 HTH_11 PF08279.7 55 0.00051 12.8 0.0 1 2 5e-05 0.0028 10.4 0.0 3 31 8 36 7 39 0.93 # 12800 # 13063 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_15 - 88 HTH_11 PF08279.7 55 0.00051 12.8 0.0 2 2 0.091 5 -0.0 0.0 34 46 53 65 52 74 0.76 # 12800 # 13063 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 3_5 - 342 Sigma70_ECF PF07638.6 185 0.00044 13.0 0.0 1 1 8.2e-06 0.00091 12.0 0.0 140 172 4 38 2 46 0.82 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 7_1 - 106 TrmB PF01978.14 68 2.8e-05 16.9 0.0 1 1 4.3e-07 4.7e-05 16.1 0.0 19 44 75 100 69 101 0.89 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 3_5 - 342 LacI PF00356.16 46 3.8e-05 16.4 0.2 1 1 1.2e-06 0.00013 14.6 0.0 2 25 20 43 19 50 0.86 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_37 - 239 Seryl_tRNA_N PF02403.17 108 5.2e-06 19.5 0.8 1 2 4.7e-08 5.2e-06 19.5 0.8 24 89 30 94 27 103 0.92 # 29670 # 30386 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.526 1_37 - 239 Seryl_tRNA_N PF02403.17 108 5.2e-06 19.5 0.8 2 2 0.0051 0.56 3.4 2.4 40 89 154 202 120 219 0.69 # 29670 # 30386 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.526 1_38 - 917 AAA_10 PF12846.2 304 1.4e-42 139.1 0.1 1 1 2.9e-43 5.4e-42 137.2 0.0 2 298 536 830 535 836 0.91 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 2_14 - 851 AAA_10 PF12846.2 304 9.4e-34 110.2 0.0 1 1 9.4e-35 1.7e-33 109.3 0.0 7 303 471 761 466 762 0.91 # 8629 # 11181 # -1 # ID=2_14;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.420 2_18 - 689 AAA_10 PF12846.2 304 2.2e-19 63.0 0.0 1 1 7.8e-20 1.4e-18 60.3 0.0 2 297 176 606 175 611 0.78 # 16360 # 18426 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_23 - 636 AAA_10 PF12846.2 304 2.3e-10 33.4 0.0 1 1 1.8e-09 3.3e-08 26.3 0.0 4 299 192 481 189 483 0.72 # 17676 # 19583 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 3_4 - 260 AAA_10 PF12846.2 304 4.1e-05 16.1 0.2 1 2 0.086 1.6 1.1 0.0 106 155 28 69 4 89 0.61 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_4 - 260 AAA_10 PF12846.2 304 4.1e-05 16.1 0.2 2 2 2.6e-05 0.00049 12.6 0.1 3 35 103 135 101 172 0.84 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_30 - 350 AAA_10 PF12846.2 304 6.1e-05 15.6 0.0 1 1 5.2e-06 9.6e-05 14.9 0.0 4 23 171 190 168 212 0.89 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 7_1 - 106 HTH_20 PF12840.2 61 2.1e-05 17.4 0.1 1 1 4.1e-06 0.00023 14.0 0.1 2 43 29 97 28 101 0.93 # 202 # 519 # -1 # ID=7_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 3_5 - 342 HTH_20 PF12840.2 61 8.4e-05 15.4 0.0 1 1 4e-06 0.00022 14.1 0.0 18 46 12 39 10 40 0.91 # 6113 # 7138 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 2_13 - 271 IPT PF01745.11 233 0.0054 8.9 5.0 1 2 0.019 2.1 0.5 0.1 125 173 41 90 28 99 0.75 # 7820 # 8632 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.408 2_13 - 271 IPT PF01745.11 233 0.0054 8.9 5.0 2 2 3.8e-05 0.0043 9.3 1.8 134 214 168 250 157 264 0.88 # 7820 # 8632 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.408 3_4 - 260 IstB_IS21 PF01695.12 178 9.5e-66 213.6 0.0 1 1 2.2e-67 2.4e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_3 - 154 SSB PF00436.20 104 1.7e-44 143.0 0.8 1 1 1.8e-46 2e-44 142.8 0.8 1 103 6 112 6 113 0.97 # 1141 # 1602 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.489 1_16 - 277 HTH_21 PF13276.1 60 2.4e-16 52.6 8.6 1 1 4.2e-18 4.7e-16 51.7 8.6 2 60 34 90 33 91 0.87 # 13090 # 13920 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 2_16 - 190 Phage_AlpA PF05930.7 51 2.2e-05 17.2 0.0 1 1 4.3e-07 4.8e-05 16.2 0.0 5 25 160 180 157 183 0.87 # 14395 # 14964 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/0cf713b5-bd96-49c9-b0c3-71dbab504bd2 # Target file: checkm_output/bins/pm1173/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1173/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0cf713b5-bd96-49c9-b0c3-71dbab504bd2 checkm_output/bins/pm1173/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:36:35 2017 # [ok]