# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 202 HTH_38 PF13936.1 44 4.9e-09 25.4 1.0 1 1 1.7e-09 1.7e-08 23.6 0.0 15 44 168 197 160 197 0.93 # 3156 # 3761 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_3 - 202 Sigma70_r4_2 PF08281.7 54 1.3e-07 20.8 0.0 1 1 4e-08 4e-07 19.2 0.0 17 44 165 191 165 199 0.86 # 3156 # 3761 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_3 - 202 GerE PF00196.14 58 3e-06 16.3 0.0 1 1 5.1e-07 5.1e-06 15.5 0.0 11 35 166 190 165 201 0.88 # 3156 # 3761 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_6 - 119 HTH_3 PF01381.17 55 3.2e-12 35.9 0.0 1 1 4.9e-13 4.9e-12 35.3 0.0 1 52 16 67 16 70 0.95 # 6208 # 6564 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.384 1_3 - 202 HTH_23 PF13384.1 50 1.2e-08 24.2 0.2 1 1 1.2e-09 1.2e-08 24.2 0.2 10 42 166 198 160 201 0.92 # 3156 # 3761 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_3 - 202 HTH_7 PF02796.10 45 1.5e-06 17.7 0.0 1 1 4.4e-07 4.4e-06 16.3 0.0 13 38 165 190 156 190 0.93 # 3156 # 3761 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_6 - 119 HTH_19 PF12844.2 64 4e-10 29.4 0.0 1 1 5.5e-11 5.5e-10 28.9 0.0 11 59 23 71 16 76 0.90 # 6208 # 6564 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.384 1_3 - 202 HTH_29 PF13551.1 112 4.2e-06 16.6 0.5 1 2 0.0071 0.071 3.0 0.0 51 88 43 87 25 101 0.62 # 3156 # 3761 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_3 - 202 HTH_29 PF13551.1 112 4.2e-06 16.6 0.5 2 2 1.9e-05 0.00019 11.3 0.2 4 36 166 197 165 200 0.89 # 3156 # 3761 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_3 - 202 HTH_28 PF13518.1 52 2.6e-09 26.7 0.4 1 1 6.1e-10 6.1e-09 25.5 0.4 4 38 165 199 165 201 0.92 # 3156 # 3761 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_3 - 202 HTH_24 PF13412.1 48 2.4e-06 16.6 0.0 1 1 5.2e-07 5.2e-06 15.6 0.0 16 40 172 196 168 196 0.89 # 3156 # 3761 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_3 - 202 HTH_10 PF04967.7 53 4.3e-05 12.8 0.0 1 1 1.3e-05 0.00013 11.3 0.0 27 46 177 196 173 199 0.86 # 3156 # 3761 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_3 - 202 HTH_31 PF13560.1 64 0.00024 11.0 4.3 1 2 0.023 0.23 1.5 0.1 15 38 23 56 16 77 0.73 # 3156 # 3761 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_3 - 202 HTH_31 PF13560.1 64 0.00024 11.0 4.3 2 2 4.9e-05 0.00049 10.0 0.5 11 39 170 198 142 201 0.90 # 3156 # 3761 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_3 - 202 HTH_Tnp_ISL3 PF13542.1 52 4.1e-06 15.7 0.2 1 1 1e-06 1e-05 14.4 0.2 29 51 175 197 166 198 0.85 # 3156 # 3761 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_3 - 202 CENP-B_N PF04218.8 53 1.6e-05 14.0 0.0 1 1 3.9e-06 3.9e-05 12.8 0.0 21 45 172 196 165 199 0.87 # 3156 # 3761 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_6 - 119 HTH_26 PF13443.1 63 4.2e-06 16.6 0.0 1 1 7.4e-07 7.4e-06 15.9 0.0 9 53 23 66 10 68 0.90 # 6208 # 6564 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.384 1_6 - 119 HTH_17 PF12728.2 51 3.2e-05 13.9 0.0 1 1 6.5e-06 6.5e-05 12.9 0.0 2 25 25 48 24 59 0.89 # 6208 # 6564 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.384 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/4358fc74-00d6-44bf-9003-9d01415128ba # Target file: checkm_output/bins/pm1172/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1172/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4358fc74-00d6-44bf-9003-9d01415128ba checkm_output/bins/pm1172/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:36:30 2017 # [ok]