# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 340 Zn_Tnp_IS1 PF03811.8 36 3.7e-22 69.8 4.2 1 1 1e-23 5.8e-22 69.1 4.2 1 36 1 36 1 36 0.99 # 5623 # 6642 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_52 - 277 rve_3 PF13683.1 67 1.4e-34 109.7 0.2 1 1 5.3e-36 3.1e-34 108.6 0.2 1 67 189 255 189 255 0.99 # 48712 # 49542 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_50 - 206 CbiA PF01656.18 195 4.5e-27 86.8 0.6 1 1 1.2e-28 6.7e-27 86.3 0.6 1 142 4 122 4 173 0.75 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_52 - 277 Sigma70_r4_2 PF08281.7 54 0.00012 13.7 0.0 1 1 4.7e-06 0.00027 12.5 0.0 20 49 2 31 1 31 0.95 # 48712 # 49542 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_48 - 291 Rep_3 PF01051.16 222 8.7e-23 73.2 0.1 1 1 2e-24 1.1e-22 72.8 0.1 2 215 22 274 21 279 0.84 # 45710 # 46582 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_52 - 277 rve PF00665.21 120 3.5e-25 80.6 0.0 1 1 2.6e-26 1.5e-24 78.6 0.0 2 120 103 218 102 218 0.93 # 48712 # 49542 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_30 - 462 AAA_23 PF13476.1 202 0.0036 9.7 4.4 1 2 0.00032 0.018 7.4 1.2 106 198 122 233 62 244 0.68 # 28878 # 30263 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_30 - 462 AAA_23 PF13476.1 202 0.0036 9.7 4.4 2 2 0.0051 0.3 3.5 0.1 144 191 349 403 302 437 0.60 # 28878 # 30263 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_50 - 206 AAA_24 PF13479.1 213 4.5e-07 21.8 0.2 1 1 1.1e-08 6.5e-07 21.2 0.2 11 88 10 94 3 98 0.86 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_51 - 88 HTH_Tnp_1 PF01527.15 76 1.1e-22 72.0 0.1 1 1 2.2e-24 1.3e-22 71.8 0.1 4 76 2 71 1 71 0.97 # 48422 # 48685 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_50 - 206 MipZ PF09140.6 261 1.1e-13 42.9 1.0 1 2 3.4e-10 2e-08 25.7 0.1 2 46 3 45 2 56 0.84 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_50 - 206 MipZ PF09140.6 261 1.1e-13 42.9 1.0 2 2 2.9e-07 1.7e-05 16.1 0.2 93 141 69 117 47 132 0.81 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_52 - 277 rve_2 PF13333.1 52 5.3e-06 18.6 0.0 1 1 2.6e-07 1.5e-05 17.2 0.0 1 47 208 258 208 260 0.96 # 48712 # 49542 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_52 - 277 HTH_32 PF13565.1 77 0.00016 14.6 1.3 1 2 2.8e-06 0.00016 14.6 1.3 24 76 27 76 10 77 0.73 # 48712 # 49542 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_52 - 277 HTH_32 PF13565.1 77 0.00016 14.6 1.3 2 2 0.015 0.85 2.7 0.3 8 60 75 121 72 130 0.57 # 48712 # 49542 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_51 - 88 HTH_23 PF13384.1 50 6.3e-08 24.3 0.2 1 1 5.1e-09 1.5e-07 23.1 0.1 8 45 11 46 3 56 0.88 # 48422 # 48685 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_52 - 277 HTH_23 PF13384.1 50 0.0003 12.6 3.7 1 1 1.8e-05 0.00053 11.8 0.0 12 37 2 28 1 38 0.86 # 48712 # 49542 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_50 - 206 Fer4_NifH PF00142.13 273 8.6e-05 13.9 0.0 1 1 2.3e-06 0.00013 13.3 0.0 8 63 10 64 3 93 0.75 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_2 - 95 Atg8 PF02991.11 104 0.00032 12.8 0.1 1 2 0.015 0.84 1.9 0.0 45 85 6 49 2 55 0.55 # 1435 # 1719 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.389 1_2 - 95 Atg8 PF02991.11 104 0.00032 12.8 0.1 2 2 7.4e-05 0.0043 9.2 0.0 55 92 56 93 52 94 0.93 # 1435 # 1719 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.389 1_8 - 340 zinc_ribbon_4 PF13717.1 36 2.2e-05 16.3 1.3 1 1 7.8e-07 4.5e-05 15.3 1.3 3 35 6 39 5 40 0.86 # 5623 # 6642 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_51 - 88 HTH_29 PF13551.1 112 1e-06 21.0 0.1 1 1 2.3e-08 1.3e-06 20.7 0.1 3 37 12 45 11 85 0.81 # 48422 # 48685 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_50 - 206 TIGR01968 TIGR01968 261 1.2e-13 42.8 3.4 1 2 4.6e-09 2.7e-07 22.0 0.4 2 39 2 38 1 47 0.89 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_50 - 206 TIGR01968 TIGR01968 261 1.2e-13 42.8 3.4 2 2 4.7e-09 2.7e-07 21.9 0.1 99 217 63 181 43 194 0.73 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_50 - 206 AAA_18 PF13238.1 129 0.00034 13.1 0.0 1 1 9.4e-06 0.00055 12.4 0.0 8 84 12 86 10 106 0.67 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_8 - 340 HTH_Tnp_IS1 PF12759.2 46 6.2e-16 49.8 0.1 1 1 2.2e-17 1.3e-15 48.8 0.1 1 27 43 69 43 71 0.97 # 5623 # 6642 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_51 - 88 HTH_28 PF13518.1 52 5.3e-09 28.2 0.0 1 1 1.3e-10 7.5e-09 27.7 0.0 4 37 12 45 9 57 0.92 # 48422 # 48685 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_52 - 277 HTH_24 PF13412.1 48 0.00037 12.1 0.2 1 1 1.7e-05 0.00099 10.7 0.0 17 36 7 27 1 28 0.86 # 48712 # 49542 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_48 - 291 HTH_36 PF13730.1 55 0.00035 12.9 0.0 1 1 2.1e-05 0.0012 11.2 0.0 6 55 210 263 205 263 0.83 # 45710 # 46582 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_50 - 206 AAA_17 PF13207.1 121 4.7e-05 16.4 0.0 1 1 1e-06 6.1e-05 16.0 0.0 9 78 12 94 11 181 0.73 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_50 - 206 VirC1 PF07015.6 231 6.6e-14 43.6 0.1 1 1 2.1e-15 1.2e-13 42.8 0.1 1 123 1 114 1 173 0.82 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_8 - 340 zinc_ribbon_5 PF13719.1 37 7.4e-06 17.7 0.8 1 1 3.2e-07 1.9e-05 16.4 0.8 3 36 6 40 5 41 0.83 # 5623 # 6642 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_31 - 227 Trans_reg_C PF00486.23 77 1e-27 88.1 0.0 1 1 6.5e-29 1.9e-27 87.2 0.0 1 77 146 221 146 221 0.96 # 30453 # 31133 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.511 1_17 - 227 Trans_reg_C PF00486.23 77 9e-27 85.0 0.4 1 1 8.1e-28 2.3e-26 83.7 0.0 1 77 146 221 146 221 0.97 # 14051 # 14731 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_52 - 277 DDE_Tnp_IS240 PF13610.1 140 0.00052 12.2 0.0 1 1 1.3e-05 0.00075 11.6 0.0 59 139 166 247 151 248 0.76 # 48712 # 49542 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_51 - 88 HTH_26 PF13443.1 63 0.00017 14.0 0.2 1 2 4.2e-05 0.0024 10.3 0.0 7 33 17 43 15 59 0.84 # 48422 # 48685 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_51 - 88 HTH_26 PF13443.1 63 0.00017 14.0 0.2 2 2 0.022 1.3 1.5 0.4 1 20 64 83 64 86 0.85 # 48422 # 48685 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_8 - 340 Zn_Tnp_IS1595 PF12760.2 46 0.00038 12.5 2.7 1 1 1.2e-05 0.00068 11.6 2.7 20 46 7 38 4 38 0.79 # 5623 # 6642 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_51 - 88 HTH_11 PF08279.7 55 0.00027 12.8 0.0 1 2 2.5e-05 0.0014 10.4 0.0 3 31 8 36 7 39 0.93 # 48422 # 48685 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_51 - 88 HTH_11 PF08279.7 55 0.00027 12.8 0.0 2 2 0.045 2.6 -0.0 0.0 34 46 53 65 52 74 0.76 # 48422 # 48685 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_50 - 206 ArsA_ATPase PF02374.10 305 1.3e-07 23.0 0.9 1 2 7.9e-09 4.6e-07 21.2 0.1 5 45 6 45 1 57 0.87 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_50 - 206 ArsA_ATPase PF02374.10 305 1.3e-07 23.0 0.9 2 2 0.021 1.2 0.1 0.1 124 135 72 83 49 85 0.76 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_50 - 206 AAA_31 PF13614.1 157 2.3e-11 36.0 0.1 1 2 6.6e-10 3.8e-08 25.5 0.0 1 42 2 42 2 67 0.86 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_50 - 206 AAA_31 PF13614.1 157 2.3e-11 36.0 0.1 2 2 8.7e-05 0.005 8.9 0.1 110 152 68 108 49 111 0.82 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_43 - 363 MetW PF07021.7 193 0.00063 11.3 0.0 1 1 1.9e-05 0.0011 10.4 0.0 117 152 236 270 232 273 0.83 # 41857 # 42945 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.619 1_52 - 277 HTH_21 PF13276.1 60 1.2e-16 52.6 8.6 1 1 4.2e-18 2.4e-16 51.7 8.6 2 60 34 90 33 91 0.87 # 48712 # 49542 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/16d9c962-cf60-4b98-b987-a0ec5e8de75f # Target file: checkm_output/bins/pm1153/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1153/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/16d9c962-cf60-4b98-b987-a0ec5e8de75f checkm_output/bins/pm1153/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:35:58 2017 # [ok]