# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 211 TIGR01173 TIGR01173 452 1.2e-10 31.5 0.1 1 1 6.4e-12 1.7e-10 30.9 0.1 390 446 109 165 100 170 0.87 # 2826 # 3458 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.494 1_18 - 325 Sigma54_activat PF00158.21 168 6.5e-65 208.7 0.0 1 1 3.6e-66 9.4e-65 208.2 0.0 2 163 9 170 8 175 0.98 # 14843 # 15817 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_16 - 303 TIGR01830 TIGR01830 239 1.5e-48 156.2 0.0 1 1 7e-50 1.8e-48 155.9 0.0 1 237 60 298 60 300 0.92 # 13112 # 14020 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_18 - 325 HTH_8 PF02954.14 42 2.6e-10 30.8 0.4 1 1 2e-11 5.3e-10 29.8 0.4 6 41 286 321 282 322 0.92 # 14843 # 15817 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_8 - 514 zf-ribbon_3 PF13248.1 26 0.015 5.7 9.1 1 2 9.1e-05 0.0024 8.2 0.9 18 24 95 101 93 108 0.74 # 5803 # 7344 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_8 - 514 zf-ribbon_3 PF13248.1 26 0.015 5.7 9.1 2 2 0.0085 0.22 1.9 0.1 18 23 449 454 446 457 0.83 # 5803 # 7344 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_18 - 325 AAA PF00004.24 132 4e-06 18.1 0.0 1 1 3.4e-07 8.8e-06 17.0 0.0 1 125 32 167 32 171 0.73 # 14843 # 15817 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_18 - 325 AAA_16 PF13191.1 185 6.8e-05 13.9 0.1 1 1 7.2e-06 0.00019 12.5 0.0 18 64 21 69 10 126 0.78 # 14843 # 15817 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_25 - 292 HTH_1 PF00126.22 60 6e-24 74.7 2.1 1 1 4.8e-25 1.2e-23 73.7 2.1 1 60 8 67 8 67 0.97 # 20134 # 21009 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_16 - 303 adh_short_C2 PF13561.1 241 6.8e-31 98.8 0.0 1 1 3e-32 7.9e-31 98.6 0.0 5 239 66 298 63 300 0.95 # 13112 # 14020 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_19 - 223 Mnd1 PF03962.10 188 0.047 4.3 30.2 1 3 0.012 0.32 1.6 6.9 64 111 33 80 25 93 0.78 # 15988 # 16656 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.501 1_19 - 223 Mnd1 PF03962.10 188 0.047 4.3 30.2 2 3 3.1e-05 0.0008 10.1 3.8 63 132 93 161 90 167 0.89 # 15988 # 16656 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.501 1_19 - 223 Mnd1 PF03962.10 188 0.047 4.3 30.2 3 3 0.001 0.027 5.1 4.8 70 129 160 220 155 222 0.84 # 15988 # 16656 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.501 1_16 - 303 adh_short PF00106.20 167 4.4e-35 112.1 0.1 1 1 2.1e-36 5.4e-35 111.8 0.1 3 166 60 225 58 226 0.97 # 13112 # 14020 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_8 - 514 A2L_zn_ribbon PF08792.5 33 0.0017 8.9 4.7 1 2 0.00018 0.0048 7.5 0.6 5 29 76 101 74 102 0.90 # 5803 # 7344 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_8 - 514 A2L_zn_ribbon PF08792.5 33 0.0017 8.9 4.7 2 2 0.0078 0.2 2.3 0.3 20 28 446 454 444 457 0.62 # 5803 # 7344 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_16 - 303 Epimerase PF01370.16 236 3.6e-07 20.8 0.0 1 1 1.9e-08 4.9e-07 20.4 0.0 1 157 60 224 60 238 0.80 # 13112 # 14020 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_8 - 514 Ribosomal_S27e PF01667.12 55 2.2e-05 15.0 0.8 1 1 8.6e-07 2.2e-05 15.0 0.8 5 33 72 100 69 105 0.90 # 5803 # 7344 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_16 - 303 DUF1776 PF08643.5 299 2.6e-05 14.4 0.0 1 1 1.5e-06 4e-05 13.8 0.0 107 195 152 234 146 239 0.84 # 13112 # 14020 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_8 - 514 zinc_ribbon_4 PF13717.1 36 0.0015 9.3 4.0 1 2 0.00044 0.011 6.5 0.1 1 12 73 84 73 87 0.82 # 5803 # 7344 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_8 - 514 zinc_ribbon_4 PF13717.1 36 0.0015 9.3 4.0 2 2 0.0063 0.16 2.8 0.0 5 14 96 105 95 113 0.81 # 5803 # 7344 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_18 - 325 Mg_chelatase PF01078.16 207 2.4e-09 27.6 0.0 1 2 0.00013 0.0033 7.6 0.0 25 45 32 52 27 60 0.89 # 14843 # 15817 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_18 - 325 Mg_chelatase PF01078.16 207 2.4e-09 27.6 0.0 2 2 1e-07 2.6e-06 17.7 0.0 92 157 86 149 79 158 0.89 # 14843 # 15817 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_18 - 325 AAA_5 PF07728.9 139 6e-10 30.0 0.0 1 1 3.8e-11 1e-09 29.3 0.0 1 123 31 150 31 169 0.81 # 14843 # 15817 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_18 - 325 Sigma54_activ_2 PF14532.1 138 1.6e-25 80.8 0.0 1 1 2.2e-26 5.7e-25 79.0 0.0 1 138 9 179 9 179 0.90 # 14843 # 15817 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_8 - 514 DZR PF12773.2 50 0.0015 9.4 4.8 1 2 0.0017 0.043 4.8 3.4 1 20 77 101 64 109 0.61 # 5803 # 7344 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_8 - 514 DZR PF12773.2 50 0.0015 9.4 4.8 2 2 0.0053 0.14 3.1 0.0 13 23 448 458 441 487 0.75 # 5803 # 7344 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_18 - 325 AAA_2 PF07724.9 171 1.3e-06 19.4 0.0 1 1 1.2e-07 3.2e-06 18.1 0.0 6 131 32 152 30 181 0.85 # 14843 # 15817 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_16 - 303 Eno-Rase_NADH_b PF12242.3 78 1.5e-06 19.0 0.1 1 1 1.1e-07 2.9e-06 18.1 0.1 33 66 52 83 45 93 0.80 # 13112 # 14020 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_8 - 514 zinc_ribbon_5 PF13719.1 37 0.0012 9.6 3.9 1 2 0.0004 0.01 6.5 0.1 1 12 73 84 73 87 0.82 # 5803 # 7344 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_8 - 514 zinc_ribbon_5 PF13719.1 37 0.0012 9.6 3.9 2 2 0.0051 0.13 3.0 0.0 5 14 96 105 95 113 0.81 # 5803 # 7344 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_8 - 514 Zn-ribbon_8 PF09723.5 42 7.1e-05 13.8 7.4 1 2 0.00023 0.006 7.6 5.0 7 35 76 102 75 106 0.81 # 5803 # 7344 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_8 - 514 Zn-ribbon_8 PF09723.5 42 7.1e-05 13.8 7.4 2 2 0.00078 0.02 5.9 0.0 8 24 450 466 437 470 0.75 # 5803 # 7344 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_12 - 131 BOF PF04076.8 103 4.3e-34 107.5 0.0 1 1 2.1e-35 5.4e-34 107.2 0.0 4 103 30 130 26 130 0.97 # 10926 # 11318 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.466 1_25 - 292 HTH_20 PF12840.2 61 4.5e-05 14.3 0.4 1 2 0.00018 0.0047 7.8 0.1 20 57 16 54 4 58 0.79 # 20134 # 21009 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_25 - 292 HTH_20 PF12840.2 61 4.5e-05 14.3 0.4 2 2 0.0024 0.061 4.2 0.0 20 43 163 190 157 194 0.81 # 20134 # 21009 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_19 - 223 AAA_13 PF13166.1 712 0.00069 9.1 20.8 1 2 8.6e-07 2.2e-05 14.0 12.3 333 457 6 132 3 140 0.91 # 15988 # 16656 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.501 1_19 - 223 AAA_13 PF13166.1 712 0.00069 9.1 20.8 2 2 0.012 0.31 0.3 1.2 366 397 169 201 149 222 0.35 # 15988 # 16656 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.501 1_7 - 280 Pterin_bind PF00809.17 210 6.6e-59 189.7 0.0 1 1 3e-60 7.9e-59 189.5 0.0 1 210 7 216 7 216 0.98 # 4559 # 5398 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_16 - 303 KR PF08659.5 181 2.5e-14 44.3 0.0 1 1 1.3e-15 3.4e-14 43.9 0.0 3 174 60 236 59 242 0.81 # 13112 # 14020 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/6e66d67e-f7cc-4db8-ae20-9d066086b714 # Target file: checkm_output/bins/pm1148/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1148/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6e66d67e-f7cc-4db8-ae20-9d066086b714 checkm_output/bins/pm1148/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:35:54 2017 # [ok]