# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 197 HTH_38 PF13936.1 44 4.2e-05 13.3 0.3 1 1 7.3e-06 0.0001 12.0 0.3 11 39 161 189 158 190 0.90 # 8355 # 8945 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.357 1_14 - 197 HTH_8 PF02954.14 42 1.7e-05 14.5 0.2 1 2 0.044 0.62 -0.1 0.0 2 12 124 134 123 134 0.85 # 8355 # 8945 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.357 1_14 - 197 HTH_8 PF02954.14 42 1.7e-05 14.5 0.2 2 2 8.4e-06 0.00012 11.8 0.0 14 35 166 187 160 191 0.84 # 8355 # 8945 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.357 1_3 - 207 CbiA PF01656.18 195 1.3e-11 34.3 0.9 1 1 4.2e-12 5.9e-11 32.2 0.9 1 185 3 167 3 176 0.71 # 925 # 1545 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.382 1_7 - 88 Sigma70_r4_2 PF08281.7 54 6e-09 25.5 0.1 1 2 0.00028 0.002 7.8 0.0 30 49 13 32 9 35 0.85 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_7 - 88 Sigma70_r4_2 PF08281.7 54 6e-09 25.5 0.1 2 2 7.6e-07 5.3e-06 16.1 0.0 14 49 44 78 42 82 0.91 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_14 - 197 Sigma70_r4_2 PF08281.7 54 9.7e-05 12.0 0.0 1 1 3e-05 0.00021 10.9 0.0 17 46 161 190 156 191 0.86 # 8355 # 8945 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.357 1_13 - 104 zf-ribbon_3 PF13248.1 26 2.5e-06 16.8 1.4 1 1 2.7e-07 3.7e-06 16.3 1.4 4 24 3 23 1 24 0.92 # 7887 # 8198 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.372 1_7 - 88 Terminase_5 PF06056.7 58 1.8e-05 14.4 1.0 1 2 0.016 0.23 1.3 0.0 17 40 13 36 11 40 0.84 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_7 - 88 Terminase_5 PF06056.7 58 1.8e-05 14.4 1.0 2 2 8.2e-06 0.00011 11.9 0.2 3 43 45 85 43 87 0.94 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_3 - 207 MipZ PF09140.6 261 3.3e-08 23.0 0.0 1 1 3.1e-09 4.3e-08 22.6 0.0 7 54 7 54 1 114 0.75 # 925 # 1545 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.382 1_14 - 197 Trp_repressor PF01371.14 88 3.4e-05 13.9 0.0 1 1 6e-06 8.4e-05 12.7 0.0 40 70 164 191 160 195 0.86 # 8355 # 8945 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.357 1_14 - 197 Sigma70_r4 PF04545.11 50 1.3e-05 14.7 0.0 1 1 2.2e-06 3.1e-05 13.4 0.0 9 39 159 189 156 191 0.92 # 8355 # 8945 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.357 1_7 - 88 HTH_AraC PF00165.18 42 6.9e-05 12.9 0.1 1 2 0.00092 0.013 5.7 0.0 12 27 13 28 6 32 0.85 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_7 - 88 HTH_AraC PF00165.18 42 6.9e-05 12.9 0.1 2 2 0.0013 0.018 5.2 0.0 1 30 51 77 51 82 0.73 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_7 - 88 HTH_3 PF01381.17 55 2.2e-05 14.4 0.5 1 2 7e-05 0.00049 10.1 0.1 4 29 4 29 1 35 0.87 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_7 - 88 HTH_3 PF01381.17 55 2.2e-05 14.4 0.5 2 2 0.028 0.19 1.8 0.0 6 20 52 66 46 75 0.81 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_14 - 197 HTH_3 PF01381.17 55 7.5e-05 12.8 0.1 1 1 2.2e-05 0.00015 11.8 0.1 5 27 166 188 163 189 0.88 # 8355 # 8945 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.357 1_7 - 88 HTH_23 PF13384.1 50 2.7e-06 17.2 0.4 1 2 0.006 0.042 3.8 0.0 26 38 18 30 11 43 0.79 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_7 - 88 HTH_23 PF13384.1 50 2.7e-06 17.2 0.4 2 2 1.3e-05 9e-05 12.3 0.2 4 43 42 81 39 87 0.91 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_14 - 197 HTH_23 PF13384.1 50 4.3e-06 16.5 0.6 1 1 2.8e-06 1.9e-05 14.5 0.1 10 36 162 189 158 194 0.85 # 8355 # 8945 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.357 1_7 - 88 HTH_7 PF02796.10 45 1.8e-06 18.0 0.2 1 2 6.8e-05 0.00048 10.2 0.1 23 43 11 31 6 33 0.88 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_7 - 88 HTH_7 PF02796.10 45 1.8e-06 18.0 0.2 2 2 0.0018 0.012 5.7 0.0 12 32 46 66 34 73 0.83 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_14 - 197 HTH_7 PF02796.10 45 4.5e-06 16.7 0.0 1 1 1.9e-06 1.4e-05 15.2 0.0 19 45 168 194 151 194 0.77 # 8355 # 8945 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.357 1_3 - 207 TIGR01968 TIGR01968 261 0.00016 10.9 1.5 1 2 7.1e-05 0.001 8.2 0.2 4 39 3 38 1 43 0.89 # 925 # 1545 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.382 1_3 - 207 TIGR01968 TIGR01968 261 0.00016 10.9 1.5 2 2 0.0068 0.095 1.8 0.1 105 170 71 137 62 155 0.70 # 925 # 1545 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.382 1_7 - 88 HTH_28 PF13518.1 52 1.8e-05 14.9 0.1 1 2 0.0023 0.016 5.5 0.0 14 33 11 30 2 36 0.79 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_7 - 88 HTH_28 PF13518.1 52 1.8e-05 14.9 0.1 2 2 0.00043 0.003 7.8 0.1 1 43 44 86 44 87 0.90 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_14 - 197 HTH_28 PF13518.1 52 4.7e-05 13.6 0.1 1 1 1.7e-05 0.00012 12.3 0.1 10 33 168 191 160 195 0.77 # 8355 # 8945 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.357 1_10 - 120 SurA_N PF09312.6 118 1.6e-06 18.2 0.1 1 1 1.4e-07 1.9e-06 17.9 0.1 28 108 31 107 13 116 0.83 # 6001 # 6360 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.294 1_14 - 197 HTH_24 PF13412.1 48 2.3e-05 13.9 0.0 1 1 3e-06 4.3e-05 13.1 0.0 12 38 165 191 163 193 0.86 # 8355 # 8945 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.357 1_12 - 174 HemN_C PF06969.11 66 4.7e-05 13.6 0.0 1 1 1.7e-05 0.00024 11.4 0.0 30 59 53 83 46 83 0.85 # 7346 # 7867 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_13 - 104 DZR PF12773.2 50 1.2e-06 18.5 1.3 1 1 1.2e-07 1.6e-06 18.1 1.3 1 22 4 25 3 42 0.82 # 7887 # 8198 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.372 1_14 - 197 HTH_Tnp_ISL3 PF13542.1 52 0.00012 11.4 0.0 1 1 1.6e-05 0.00023 10.6 0.0 20 46 162 189 158 190 0.86 # 8355 # 8945 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.357 1_14 - 197 CENP-B_N PF04218.8 53 3.6e-06 16.5 0.7 1 2 0.00021 0.003 7.2 0.1 11 26 128 143 127 148 0.92 # 8355 # 8945 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.357 1_14 - 197 CENP-B_N PF04218.8 53 3.6e-06 16.5 0.7 2 2 0.00018 0.0026 7.4 0.1 14 41 161 189 160 195 0.78 # 8355 # 8945 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.357 1_7 - 88 HTH_26 PF13443.1 63 8.9e-05 12.9 0.3 1 1 1.5e-05 0.00021 11.7 0.0 8 34 7 33 2 39 0.90 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_7 - 88 HTH_11 PF08279.7 55 5.1e-05 13.1 0.0 1 1 9.4e-06 0.00013 11.8 0.0 9 35 3 29 1 30 0.88 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_14 - 197 Sigma70_ECF PF07638.6 185 2.4e-05 14.2 0.0 1 1 2.8e-06 4e-05 13.5 0.0 142 173 161 192 152 195 0.90 # 8355 # 8945 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.357 1_13 - 104 zinc_ribbon_2 PF13240.1 23 6.1e-07 19.1 2.5 1 1 6.2e-08 8.6e-07 18.6 2.5 1 22 3 24 3 25 0.96 # 7887 # 8198 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.372 1_7 - 88 Phage_terminase PF10668.4 60 2e-05 14.5 0.3 1 2 3.3e-05 0.00046 10.2 0.0 17 52 4 39 3 47 0.84 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_7 - 88 Phage_terminase PF10668.4 60 2e-05 14.5 0.3 2 2 0.0049 0.069 3.2 0.1 9 39 45 72 39 83 0.73 # 3651 # 3914 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.360 1_13 - 104 UPF0547 PF10571.4 26 0.00022 11.1 3.4 1 1 2.2e-05 0.00031 10.6 3.4 2 21 3 22 3 24 0.96 # 7887 # 8198 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.372 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/82359bd0-a610-4c51-8cfd-644105ddd519 # Target file: checkm_output/bins/pm1144/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1144/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/82359bd0-a610-4c51-8cfd-644105ddd519 checkm_output/bins/pm1144/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:35:49 2017 # [ok]