# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 201 MADF_DNA_bdg PF10545.4 85 1.7e-05 14.8 11.1 1 3 0.00087 0.0095 6.0 0.8 47 75 17 45 10 50 0.69 # 1986 # 2588 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.264 1_3 - 201 MADF_DNA_bdg PF10545.4 85 1.7e-05 14.8 11.1 2 3 0.00013 0.0014 8.7 1.8 43 68 46 70 34 78 0.69 # 1986 # 2588 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.264 1_3 - 201 MADF_DNA_bdg PF10545.4 85 1.7e-05 14.8 11.1 3 3 0.00021 0.0023 8.0 0.9 43 65 69 96 64 121 0.70 # 1986 # 2588 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.264 1_6 - 104 HTH_IclR PF09339.5 52 4.6e-05 12.8 0.3 1 1 1.2e-05 0.00013 11.4 0.1 15 37 16 38 10 42 0.87 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_35 PF13693.1 78 2.6e-41 129.2 0.7 1 1 2.8e-42 3e-41 129.0 0.7 1 76 5 80 5 82 0.99 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_3 - 201 HSP70 PF00012.15 602 0.079 0.5 16.0 1 1 0.0081 0.089 0.3 16.0 502 588 12 99 1 116 0.61 # 1986 # 2588 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.264 1_6 - 104 HTH_AsnC-type PF13404.1 42 7.4e-05 12.1 0.1 1 2 7e-05 0.00077 8.9 0.2 18 40 20 42 10 43 0.84 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_AsnC-type PF13404.1 42 7.4e-05 12.1 0.1 2 2 0.025 0.28 0.7 0.0 23 35 51 63 51 63 0.88 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_38 PF13936.1 44 2.4e-08 23.3 0.9 1 2 3.3e-07 3.6e-06 16.3 0.1 14 43 13 42 9 43 0.94 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_38 PF13936.1 44 2.4e-08 23.3 0.9 2 2 0.00072 0.0079 5.7 0.1 26 34 51 59 50 62 0.92 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_8 PF02954.14 42 8.4e-07 18.4 0.2 1 2 2.5e-06 2.7e-05 13.5 0.1 10 41 11 42 10 43 0.96 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_8 PF02954.14 42 8.4e-07 18.4 0.2 2 2 0.0056 0.062 2.8 0.0 25 36 52 63 51 63 0.93 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_Tnp_1 PF01527.15 76 3.6e-06 16.8 0.0 1 2 2.9e-06 3.2e-05 13.7 0.0 13 42 9 38 3 48 0.90 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_Tnp_1 PF01527.15 76 3.6e-06 16.8 0.0 2 2 0.025 0.28 1.1 0.0 29 40 51 62 49 82 0.91 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_3 - 201 RRF PF01765.14 165 0.00041 9.6 14.2 1 1 5.1e-05 0.00056 9.2 13.7 96 164 30 97 23 109 0.74 # 1986 # 2588 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.264 1_6 - 104 HTH_AraC PF00165.18 42 3.2e-05 13.6 0.0 1 1 1e-05 0.00011 11.9 0.0 1 31 15 42 15 43 0.92 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_23 PF13384.1 50 4.7e-07 19.3 0.1 1 2 2.1e-06 2.3e-05 13.9 0.0 11 40 13 42 9 49 0.83 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_23 PF13384.1 50 4.7e-07 19.3 0.1 2 2 0.0038 0.041 3.5 0.0 23 35 51 63 48 63 0.91 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_7 PF02796.10 45 1.4e-05 14.7 0.0 1 1 3.5e-06 3.8e-05 13.4 0.0 12 38 10 36 2 44 0.91 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_29 PF13551.1 112 3.7e-05 13.7 0.1 1 1 6.8e-06 7.5e-05 12.7 0.1 5 36 13 43 11 62 0.85 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_28 PF13518.1 52 2.7e-06 17.2 0.0 1 2 2e-06 2.2e-05 14.3 0.0 5 35 11 42 9 43 0.86 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_28 PF13518.1 52 2.7e-06 17.2 0.0 2 2 0.038 0.42 0.6 0.0 18 29 51 62 45 63 0.89 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_24 PF13412.1 48 2.9e-07 19.7 0.2 1 1 5.9e-08 6.5e-07 18.6 0.1 8 40 11 42 10 44 0.92 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_10 PF04967.7 53 4.3e-05 12.9 0.0 1 1 7.1e-06 7.9e-05 12.1 0.0 23 47 19 43 16 46 0.90 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_Tnp_ISL3 PF13542.1 52 1e-05 14.6 1.4 1 1 1.3e-06 1.4e-05 14.1 0.2 20 51 12 43 11 44 0.92 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 HTH_26 PF13443.1 63 5.9e-06 16.3 0.0 1 1 1.4e-06 1.6e-05 15.0 0.0 5 31 14 40 11 44 0.89 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 MarR_2 PF12802.2 62 3.8e-06 16.4 0.5 1 2 1.6e-06 1.8e-05 14.3 0.2 9 45 10 43 9 43 0.89 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 104 MarR_2 PF12802.2 62 3.8e-06 16.4 0.5 2 2 0.049 0.54 -0.1 0.0 27 37 51 61 51 62 0.85 # 4377 # 4688 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/376d98a2-9eaf-4b0e-9ddf-ea547f5c1cb3 # Target file: checkm_output/bins/pm114/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm114/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/376d98a2-9eaf-4b0e-9ddf-ea547f5c1cb3 checkm_output/bins/pm114/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:35:46 2017 # [ok]