# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_20 - 482 HTH_38 PF13936.1 44 1.3e-09 28.2 0.2 1 1 1.9e-10 3.8e-09 26.7 0.2 6 42 409 445 405 446 0.92 # 12509 # 13954 # 1 # ID=1_20;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.632 1_17 - 210 MobB PF03205.9 140 7.2e-06 16.4 0.0 1 1 8.2e-07 1.6e-05 15.2 0.0 10 108 12 91 2 104 0.72 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_6 - 217 TBPIP PF07106.8 169 5e-05 13.5 3.2 1 2 3.5e-05 0.0007 9.8 0.0 72 107 34 69 30 84 0.83 # 3575 # 4225 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.602 1_6 - 217 TBPIP PF07106.8 169 5e-05 13.5 3.2 2 2 0.0031 0.062 3.5 1.4 83 153 130 203 114 210 0.74 # 3575 # 4225 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.602 1_2 - 331 DUF3584 PF12128.3 1201 3.4e-09 25.1 59.1 1 1 2e-10 4.1e-09 24.9 59.1 299 535 80 320 13 327 0.62 # 958 # 1950 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.661 1_20 - 482 TetR_N PF00440.18 47 1.4e-05 15.4 0.1 1 1 1.8e-06 3.6e-05 14.1 0.1 15 34 422 441 421 443 0.89 # 12509 # 13954 # 1 # ID=1_20;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.632 1_17 - 210 AAA_19 PF13245.1 76 2.6e-05 14.6 0.5 1 2 7.4e-06 0.00015 12.2 0.1 20 51 12 41 4 60 0.79 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 AAA_19 PF13245.1 76 2.6e-05 14.6 0.5 2 2 0.088 1.8 -0.8 0.0 49 62 188 201 168 206 0.74 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 CbiA PF01656.18 195 4.2e-31 98.5 0.9 1 1 5.8e-32 1.2e-30 97.0 0.9 1 148 4 133 4 172 0.77 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 KTI12 PF08433.5 270 4e-05 13.5 0.0 1 1 2.7e-06 5.5e-05 13.1 0.0 11 45 12 46 6 84 0.79 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_20 - 482 Sigma70_r4_2 PF08281.7 54 1.9e-05 14.8 0.1 1 1 2.1e-06 4.3e-05 13.7 0.1 23 46 420 443 413 446 0.88 # 12509 # 13954 # 1 # ID=1_20;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.632 1_11 - 255 rve PF00665.21 120 2.2e-14 44.3 0.0 1 2 0.02 0.41 1.5 0.0 83 102 30 49 7 51 0.90 # 6534 # 7298 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_11 - 255 rve PF00665.21 120 2.2e-14 44.3 0.0 2 2 1.7e-14 3.4e-13 40.5 0.0 8 117 73 179 69 182 0.90 # 6534 # 7298 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_17 - 210 YhjQ PF06564.7 244 5.7e-07 19.7 0.2 1 2 8.8e-08 1.8e-06 18.1 0.1 1 41 1 41 1 46 0.94 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 YhjQ PF06564.7 244 5.7e-07 19.7 0.2 2 2 0.093 1.9 -1.6 0.0 113 149 71 107 64 110 0.79 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 AAA_24 PF13479.1 213 2.5e-06 17.8 0.1 1 1 2.7e-07 5.4e-06 16.7 0.1 11 89 10 96 2 101 0.69 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_18 - 73 Zeta_toxin PF06414.7 201 9.5e-05 12.2 0.1 1 1 5e-06 0.0001 12.1 0.1 21 82 10 69 3 72 0.83 # 11720 # 11938 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_20 - 482 GerE PF00196.14 58 8.9e-05 12.5 1.0 1 1 9.6e-06 0.00019 11.4 0.0 16 40 421 445 415 446 0.90 # 12509 # 13954 # 1 # ID=1_20;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.632 1_17 - 210 MipZ PF09140.6 261 1e-12 38.2 2.6 1 3 6.9e-11 1.4e-09 28.0 0.1 2 40 3 41 2 51 0.92 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 MipZ PF09140.6 261 1e-12 38.2 2.6 2 3 6.6e-05 0.0013 8.4 0.3 93 135 71 112 50 153 0.78 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 MipZ PF09140.6 261 1e-12 38.2 2.6 3 3 0.02 0.39 0.3 0.0 213 238 169 194 162 206 0.76 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_6 - 217 DivIC PF04977.10 80 2.5e-05 14.4 4.1 1 2 0.00012 0.0025 8.0 0.0 12 40 39 67 25 72 0.74 # 3575 # 4225 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.602 1_6 - 217 DivIC PF04977.10 80 2.5e-05 14.4 4.1 2 2 0.00031 0.0063 6.7 0.2 27 62 129 167 126 169 0.85 # 3575 # 4225 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.602 1_17 - 210 AAA_16 PF13191.1 185 1.8e-05 15.4 0.0 1 2 9.4e-06 0.00019 12.1 0.0 34 67 12 46 10 61 0.87 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 AAA_16 PF13191.1 185 1.8e-05 15.4 0.0 2 2 0.018 0.36 1.4 0.0 52 88 96 134 84 203 0.72 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 adh_short_C2 PF13561.1 241 5.5e-05 13.6 0.0 1 1 3.6e-06 7.2e-05 13.2 0.0 5 59 15 76 11 123 0.79 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 SRP54 PF00448.17 196 1.4e-05 15.2 0.1 1 1 1.2e-06 2.5e-05 14.4 0.1 10 39 11 40 2 86 0.89 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_11 - 255 HTH_32 PF13565.1 77 3.9e-05 15.1 0.2 1 1 6.7e-06 0.00013 13.4 0.2 37 76 15 50 6 51 0.83 # 6534 # 7298 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_20 - 482 HTH_3 PF01381.17 55 2.6e-06 17.9 0.2 1 1 4.9e-07 9.7e-06 16.1 0.2 3 32 417 446 416 464 0.86 # 12509 # 13954 # 1 # ID=1_20;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.632 1_20 - 482 HTH_23 PF13384.1 50 3.1e-08 23.8 0.1 1 1 1.3e-08 1.3e-07 21.9 0.1 2 40 408 446 407 452 0.92 # 12509 # 13954 # 1 # ID=1_20;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.632 1_15 - 215 HTH_23 PF13384.1 50 3.7e-06 17.2 0.3 1 1 3.7e-07 3.7e-06 17.2 0.3 7 37 174 204 168 212 0.86 # 10009 # 10653 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.651 1_17 - 210 Fer4_NifH PF00142.13 273 5.2e-05 13.1 0.0 1 2 5e-06 9.9e-05 12.2 0.0 6 40 8 42 2 85 0.87 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 Fer4_NifH PF00142.13 273 5.2e-05 13.1 0.0 2 2 0.1 2 -1.9 0.0 206 206 164 164 96 207 0.56 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_15 - 215 HTH_7 PF02796.10 45 5.6e-11 32.9 0.0 1 1 1.3e-11 1.3e-10 31.7 0.0 1 44 166 207 166 208 0.95 # 10009 # 10653 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.651 1_20 - 482 HTH_7 PF02796.10 45 2.3e-05 14.9 0.1 1 1 6.9e-06 6.9e-05 13.4 0.1 13 38 415 440 407 447 0.87 # 12509 # 13954 # 1 # ID=1_20;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.632 1_13 - 267 TIGR03413 TIGR03413 248 8.6e-07 18.8 0.0 1 1 6.7e-08 1.3e-06 18.2 0.0 30 164 93 240 71 242 0.66 # 7686 # 8486 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 1_11 - 255 DDE_Tnp_IS66 PF03050.9 271 2.2e-10 30.7 0.4 1 1 1.7e-11 3.4e-10 30.2 0.4 11 133 16 144 8 183 0.86 # 6534 # 7298 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_17 - 210 TIGR01968 TIGR01968 261 2.6e-07 20.5 3.2 1 2 2.2e-08 4.5e-07 19.7 0.2 2 39 2 39 1 44 0.96 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 TIGR01968 TIGR01968 261 2.6e-07 20.5 3.2 2 2 0.0085 0.17 1.4 0.4 110 147 74 111 57 152 0.70 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 AAA_18 PF13238.1 129 8.9e-05 13.5 0.0 1 1 7.9e-06 0.00016 12.7 0.0 8 24 12 33 10 132 0.80 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_15 - 215 HTH_28 PF13518.1 52 8.2e-07 19.7 1.5 1 2 0.054 0.54 1.1 0.1 7 31 22 46 21 50 0.85 # 10009 # 10653 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.651 1_15 - 215 HTH_28 PF13518.1 52 8.2e-07 19.7 1.5 2 2 6.4e-07 6.4e-06 16.8 0.2 4 36 176 208 174 213 0.86 # 10009 # 10653 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.651 1_20 - 482 HTH_28 PF13518.1 52 6.9e-05 13.5 0.0 1 1 2.6e-05 0.00026 11.7 0.0 10 35 421 446 416 452 0.87 # 12509 # 13954 # 1 # ID=1_20;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.632 1_6 - 217 MerR-DNA-bind PF09278.6 65 0.0021 9.1 6.8 1 2 0.0026 0.051 4.7 0.3 41 64 39 62 32 63 0.83 # 3575 # 4225 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.602 1_6 - 217 MerR-DNA-bind PF09278.6 65 0.0021 9.1 6.8 2 2 0.00043 0.0086 7.2 0.0 25 61 115 151 111 154 0.91 # 3575 # 4225 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.602 1_20 - 482 HTH_24 PF13412.1 48 8.2e-05 12.7 0.0 1 1 8.9e-06 0.00018 11.6 0.0 13 39 420 445 417 446 0.85 # 12509 # 13954 # 1 # ID=1_20;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.632 1_17 - 210 LpxK PF02606.9 326 4.9e-06 16.3 0.1 1 1 3.9e-07 7.7e-06 15.6 0.1 36 132 2 101 1 104 0.72 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 Methyltransf_24 PF13578.1 106 8.3e-05 14.1 0.2 1 1 1.1e-05 0.00022 12.7 0.1 7 83 13 89 11 102 0.70 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 AAA_17 PF13207.1 121 2e-07 22.5 0.0 1 1 1.5e-08 3e-07 22.0 0.0 9 78 12 89 11 145 0.62 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 AAA_25 PF13481.1 194 0.00029 10.9 2.9 1 1 0.00031 0.0062 6.6 2.9 41 78 10 37 2 103 0.60 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 VirC1 PF07015.6 231 4e-09 26.4 0.0 1 1 4.8e-10 9.6e-09 25.2 0.0 1 179 1 171 1 185 0.79 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 APS_kinase PF01583.15 157 3.7e-05 14.0 0.0 1 1 3.6e-06 7.2e-05 13.1 0.0 10 39 10 39 2 53 0.89 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_11 - 255 DDE_Tnp_IS240 PF13610.1 140 2e-54 174.0 0.0 1 1 1.3e-55 2.6e-54 173.6 0.0 3 139 73 211 71 212 0.98 # 6534 # 7298 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_16 - 109 Seryl_tRNA_N PF02403.17 108 1.1e-05 16.2 0.0 1 1 7.6e-07 1.5e-05 15.7 0.0 38 104 10 75 7 77 0.92 # 10650 # 10976 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.602 1_17 - 210 SKI PF01202.17 158 8.6e-05 13.1 0.1 1 1 7.4e-06 0.00015 12.3 0.1 2 22 12 32 11 38 0.91 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 AAA_10 PF12846.2 304 2.5e-05 14.4 0.0 1 1 1.6e-06 3.1e-05 14.1 0.0 11 51 12 54 10 98 0.88 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_2 - 331 AAA_13 PF13166.1 712 0.023 3.6 41.8 1 1 3.7e-06 7.4e-05 11.9 9.0 323 461 36 177 8 179 0.78 # 958 # 1950 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.661 1_17 - 210 ArsA_ATPase PF02374.10 305 1.1e-07 21.8 0.3 1 2 1.2e-08 2.4e-07 20.6 0.1 6 47 7 48 1 63 0.83 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 ArsA_ATPase PF02374.10 305 1.1e-07 21.8 0.3 2 2 0.08 1.6 -1.8 0.0 125 136 74 85 57 90 0.83 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 AAA_31 PF13614.1 157 7.4e-12 36.1 0.1 1 2 7.5e-11 1.5e-09 28.6 0.0 1 41 2 42 2 46 0.93 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 1_17 - 210 AAA_31 PF13614.1 157 7.4e-12 36.1 0.1 2 2 0.00098 0.02 5.5 0.1 117 154 75 111 68 114 0.84 # 11062 # 11691 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.603 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/0dde6735-a67f-444e-b5ea-2917c9b5fea9 # Target file: checkm_output/bins/pm1138/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1138/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0dde6735-a67f-444e-b5ea-2917c9b5fea9 checkm_output/bins/pm1138/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:35:34 2017 # [ok]