# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_6 - 228 Cons_hypoth95 PF03602.10 183 9.4e-06 17.9 0.0 1 2 0.00032 0.028 6.5 0.0 113 146 19 54 5 81 0.66 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 Cons_hypoth95 PF03602.10 183 9.4e-06 17.9 0.0 2 2 4e-05 0.0036 9.4 0.0 41 62 162 183 145 218 0.78 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 4_3 - 92 Zn_Tnp_IS1 PF03811.8 36 7.2e-24 75.8 4.5 1 1 1.6e-25 1.4e-23 74.9 4.5 1 36 1 36 1 36 0.99 # 862 # 1137 # -1 # ID=4_3;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 3_1 - 111 HTH_IclR PF09339.5 52 4.5e-06 19.0 0.4 1 1 4e-07 1.8e-05 17.1 0.0 15 40 80 105 76 106 0.85 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 3_6 - 511 HTH_IclR PF09339.5 52 5.3e-05 15.6 0.3 1 2 0.042 1.9 1.0 0.0 24 36 165 177 163 186 0.81 # 3757 # 5289 # 1 # ID=3_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 3_6 - 511 HTH_IclR PF09339.5 52 5.3e-05 15.6 0.3 2 2 2.2e-05 0.00099 11.5 0.2 25 50 228 253 222 255 0.93 # 3757 # 5289 # 1 # ID=3_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 3_1 - 111 HTH_22 PF13309.1 64 0.00019 13.9 1.5 1 1 5e-06 0.00045 12.8 0.2 32 63 78 104 68 105 0.76 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 2_6 - 228 TIGR00095 TIGR00095 194 0.00015 13.9 0.0 1 2 0.00077 0.07 5.2 0.0 124 138 20 34 3 79 0.72 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 TIGR00095 TIGR00095 194 0.00015 13.9 0.0 2 2 0.00024 0.022 6.8 0.0 53 86 164 199 155 218 0.77 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_26 - 877 FtsK_SpoIIIE PF01580.13 205 1.3e-05 17.5 0.1 1 2 2e-06 0.00018 13.7 0.0 39 63 477 505 464 508 0.84 # 26041 # 28671 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_26 - 877 FtsK_SpoIIIE PF01580.13 205 1.3e-05 17.5 0.1 2 2 0.015 1.4 1.1 0.0 75 166 531 626 530 669 0.82 # 26041 # 28671 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_1 - 111 HTH_40 PF14493.1 91 0.00018 14.5 0.6 1 2 0.048 4.3 0.5 0.0 49 74 38 64 28 75 0.69 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 3_1 - 111 HTH_40 PF14493.1 91 0.00018 14.5 0.6 2 2 8.6e-06 0.00077 12.5 0.1 7 33 77 103 71 108 0.89 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 3_1 - 111 HTH_38 PF13936.1 44 9.7e-07 21.1 1.4 1 2 0.06 5.4 -0.5 0.4 7 20 41 54 40 56 0.80 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 3_1 - 111 HTH_38 PF13936.1 44 9.7e-07 21.1 1.4 2 2 2.3e-08 2.1e-06 20.0 0.0 9 41 72 104 70 107 0.93 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 1_26 - 877 MobB PF03205.9 140 0.00066 12.2 0.1 1 1 5.4e-05 0.0024 10.3 0.0 4 37 484 516 482 524 0.79 # 26041 # 28671 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_8 - 757 MobB PF03205.9 140 0.00097 11.6 0.0 1 1 5.4e-05 0.0025 10.3 0.0 7 34 192 219 188 225 0.89 # 9527 # 11797 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_3 - 252 FmrO PF07091.6 251 1.9e-82 268.7 0.0 1 1 2.4e-84 2.2e-82 268.5 0.0 1 251 12 246 12 246 0.98 # 1733 # 2488 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_7 - 1757 AAA_19 PF13245.1 76 1.7e-07 23.8 2.0 1 1 1.1e-08 5.1e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 4257 # 9527 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_31 - 123 AAA_19 PF13245.1 76 0.00061 12.3 0.0 1 1 2.2e-05 0.00097 11.7 0.0 13 37 91 115 82 122 0.78 # 30807 # 31175 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 1_31 - 123 KTI12 PF08433.5 270 0.00076 11.4 0.1 1 1 1.4e-05 0.0013 10.7 0.1 5 30 92 117 91 120 0.87 # 30807 # 31175 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 2_6 - 228 MethyltransfD12 PF02086.10 260 0.00051 12.3 0.0 1 2 0.022 2 0.5 0.0 178 188 21 31 14 91 0.83 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 MethyltransfD12 PF02086.10 260 0.00051 12.3 0.0 2 2 4e-05 0.0036 9.5 0.0 20 46 163 189 148 197 0.78 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 7_1 - 235 rve PF00665.21 120 2.9e-13 42.7 0.1 1 2 0.015 1.3 1.9 0.0 78 102 27 49 6 54 0.84 # 64 # 768 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 7_1 - 235 rve PF00665.21 120 2.9e-13 42.7 0.1 2 2 6.1e-14 5.5e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 64 # 768 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_16 - 188 Methyltransf_26 PF13659.1 117 2.4e-14 46.2 0.0 1 1 9e-16 4e-14 45.4 0.0 2 114 52 147 51 150 0.91 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_6 - 228 Methyltransf_26 PF13659.1 117 1.3e-12 40.6 0.1 1 2 7e-08 3.2e-06 20.0 0.0 54 114 4 71 2 74 0.73 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 Methyltransf_26 PF13659.1 117 1.3e-12 40.6 0.1 2 2 1.9e-07 8.7e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_7 - 1757 AAA_30 PF13604.1 196 1.6e-44 144.6 15.6 1 3 0.04 1.8 0.8 0.0 41 86 223 269 218 282 0.84 # 4257 # 9527 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_7 - 1757 AAA_30 PF13604.1 196 1.6e-44 144.6 15.6 2 3 1.9e-05 0.00086 11.6 3.9 7 146 420 551 416 561 0.81 # 4257 # 9527 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_7 - 1757 AAA_30 PF13604.1 196 1.6e-44 144.6 15.6 3 3 9.9e-44 4.4e-42 136.6 1.9 1 186 968 1156 968 1162 0.94 # 4257 # 9527 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_8 - 757 AAA_30 PF13604.1 196 0.00057 12.2 0.0 1 1 2.7e-05 0.0012 11.2 0.0 21 57 188 224 180 230 0.85 # 9527 # 11797 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 7_1 - 235 HTH_Tnp_1 PF01527.15 76 0.00022 13.9 0.3 1 1 5.4e-06 0.00048 12.9 0.3 4 51 6 58 4 63 0.79 # 64 # 768 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_1 - 111 GerE PF00196.14 58 0.00037 12.6 0.1 1 1 7.7e-06 0.00069 11.7 0.1 11 35 76 100 74 103 0.93 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 1_8 - 757 TraG-D_C PF12696.2 128 7.2e-21 67.2 0.0 1 1 1.5e-22 1.3e-20 66.3 0.0 1 127 419 541 419 542 0.86 # 9527 # 11797 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 7_1 - 235 DDE_3 PF13358.1 146 0.00062 12.3 0.0 1 1 2.1e-05 0.0019 10.7 0.0 32 90 82 141 59 146 0.87 # 64 # 768 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_6 - 228 UPF0020 PF01170.13 180 6.3e-06 18.6 0.0 1 2 0.00033 0.015 7.6 0.0 104 119 18 33 7 88 0.73 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 UPF0020 PF01170.13 180 6.3e-06 18.6 0.0 2 2 0.00012 0.0055 9.0 0.0 28 54 163 189 158 221 0.67 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_16 - 188 UPF0020 PF01170.13 180 0.00095 11.5 0.0 1 1 7.6e-05 0.0034 9.7 0.0 19 43 41 65 35 130 0.78 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_16 - 188 Methyltransf_25 PF13649.1 101 0.0001 15.4 0.0 1 1 1.7e-06 0.00015 14.9 0.0 1 101 54 142 54 142 0.81 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_33 - 484 DivIC PF04977.10 80 0.00084 11.6 4.6 1 1 1.9e-05 0.0017 10.7 4.6 17 66 76 124 72 125 0.92 # 31670 # 33121 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.578 5_6 - 474 KorB PF08535.5 93 2.8e-05 17.0 0.0 1 1 9.1e-07 8.2e-05 15.5 0.0 2 42 152 192 151 206 0.91 # 2700 # 4121 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 3_5 - 126 Cpn60_TCP1 PF00118.19 485 1.4e-26 85.9 0.0 1 1 1.8e-28 1.6e-26 85.6 0.0 388 483 10 102 4 104 0.95 # 3153 # 3530 # 1 # ID=3_5;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.672 2_6 - 228 N6_N4_Mtase PF01555.13 231 5.9e-37 120.1 0.0 1 2 1.3e-15 1.2e-13 43.8 0.0 1 114 21 124 21 133 0.89 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 N6_N4_Mtase PF01555.13 231 5.9e-37 120.1 0.0 2 2 5.4e-25 4.9e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_5 - 321 Hydantoinase_A PF01968.13 290 1.3e-08 26.9 0.2 1 3 0.062 5.6 -1.3 0.0 154 175 130 151 109 155 0.77 # 2763 # 3725 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 2_5 - 321 Hydantoinase_A PF01968.13 290 1.3e-08 26.9 0.2 2 3 3.2e-06 0.00029 12.7 0.0 68 97 156 183 149 192 0.81 # 2763 # 3725 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 2_5 - 321 Hydantoinase_A PF01968.13 290 1.3e-08 26.9 0.2 3 3 8.3e-06 0.00074 11.4 0.0 214 265 242 297 198 307 0.78 # 2763 # 3725 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 1_8 - 757 AAA_16 PF13191.1 185 3.9e-06 19.7 0.0 1 1 4.2e-07 1.9e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 9527 # 11797 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_31 - 123 AAA_16 PF13191.1 185 0.0012 11.6 0.1 1 1 4.6e-05 0.0021 10.8 0.1 22 48 86 112 80 119 0.88 # 30807 # 31175 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 1_12 - 941 Orn_Arg_deC_N PF02784.11 251 0.00091 11.2 0.0 1 1 1e-05 0.00091 11.2 0.0 171 212 610 650 598 684 0.76 # 14069 # 16891 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.512 3_1 - 111 HTH_Tnp_IS630 PF01710.11 120 3.9e-05 16.1 0.0 1 1 7.2e-07 6.5e-05 15.4 0.0 8 44 73 109 68 110 0.91 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 7_1 - 235 HTH_32 PF13565.1 77 1.2e-06 22.1 0.2 1 1 5.6e-08 5.1e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 64 # 768 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_6 - 474 HTH_23 PF13384.1 50 5e-07 22.1 0.0 1 1 1.5e-07 3.4e-06 19.4 0.0 12 40 148 176 141 180 0.92 # 2700 # 4121 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 7_1 - 235 HTH_23 PF13384.1 50 5.5e-06 18.8 0.7 1 2 0.063 1.4 1.6 0.0 7 27 11 35 7 36 0.69 # 64 # 768 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 7_1 - 235 HTH_23 PF13384.1 50 5.5e-06 18.8 0.7 2 2 7.4e-06 0.00017 14.0 0.1 28 42 41 55 40 62 0.87 # 64 # 768 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_1 - 111 HTH_23 PF13384.1 50 7.8e-06 18.3 2.0 1 1 6.1e-07 1.4e-05 17.5 0.2 5 39 71 105 67 109 0.87 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 4_3 - 92 HTH_23 PF13384.1 50 2e-05 17.0 0.0 1 1 1.4e-06 3.3e-05 16.3 0.0 7 40 53 86 51 90 0.93 # 862 # 1137 # -1 # ID=4_3;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 3_1 - 111 HTH_7 PF02796.10 45 7e-14 44.3 0.6 1 1 1.9e-15 1.7e-13 43.0 0.1 1 44 66 106 66 107 0.97 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 4_3 - 92 zinc_ribbon_4 PF13717.1 36 5.1e-05 15.7 4.1 1 1 1.6e-06 0.00014 14.3 4.1 3 35 6 39 5 40 0.86 # 862 # 1137 # -1 # ID=4_3;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 3_1 - 111 HTH_29 PF13551.1 112 3.5e-05 16.7 1.0 1 2 0.024 1.1 2.3 0.3 23 54 38 68 14 75 0.67 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 3_1 - 111 HTH_29 PF13551.1 112 3.5e-05 16.7 1.0 2 2 8.3e-06 0.00037 13.4 0.0 4 35 76 106 73 109 0.90 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 5_6 - 474 HTH_29 PF13551.1 112 0.00036 13.5 0.0 1 1 5e-05 0.0023 10.9 0.0 8 36 150 177 143 189 0.86 # 2700 # 4121 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 2_16 - 188 Met_10 PF02475.11 200 0.0004 12.7 0.0 1 1 5.7e-06 0.00051 12.4 0.0 98 189 47 132 29 145 0.79 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 7_1 - 235 DDE_Tnp_IS66 PF03050.9 271 2.1e-12 39.5 0.3 1 1 3e-14 2.7e-12 39.2 0.3 5 132 10 144 6 174 0.87 # 64 # 768 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_16 - 188 Methyltransf_31 PF13847.1 152 5.6e-07 22.0 0.0 1 1 7.6e-09 6.9e-07 21.7 0.0 5 119 52 162 48 183 0.83 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_8 - 757 TrwB_AAD_bind PF10412.4 386 3.5e-150 492.6 0.0 1 1 9.6e-152 4.3e-150 492.3 0.0 2 386 172 561 171 561 0.99 # 9527 # 11797 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_26 - 877 TrwB_AAD_bind PF10412.4 386 4.9e-07 21.4 0.2 1 2 4.8e-08 2.2e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 26041 # 28671 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_26 - 877 TrwB_AAD_bind PF10412.4 386 4.9e-07 21.4 0.2 2 2 0.054 2.4 -0.7 0.1 261 317 714 770 706 773 0.92 # 26041 # 28671 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_6 - 228 Methyltransf_15 PF09445.5 164 0.00026 13.3 0.0 1 2 0.012 1.1 1.5 0.0 53 79 4 29 2 33 0.91 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 Methyltransf_15 PF09445.5 164 0.00026 13.3 0.0 2 2 4.2e-05 0.0038 9.5 0.0 3 31 166 194 164 209 0.86 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_16 - 188 Methyltransf_12 PF08242.7 99 1e-05 18.8 0.0 1 1 2e-07 1.8e-05 18.0 0.0 1 99 55 144 55 144 0.86 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 4_3 - 92 HTH_Tnp_IS1 PF12759.2 46 1.8e-31 100.1 0.2 1 1 3.2e-33 2.9e-31 99.5 0.2 1 46 43 88 43 88 0.99 # 862 # 1137 # -1 # ID=4_3;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_16 - 188 Methyltrans_SAM PF10672.4 286 0.00083 11.0 0.0 1 1 1.3e-05 0.0012 10.5 0.0 196 261 113 173 100 180 0.78 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_26 - 877 DUF87 PF01935.12 229 2.1e-07 23.7 0.0 1 1 6.9e-09 6.2e-07 22.2 0.0 26 222 483 670 469 677 0.77 # 26041 # 28671 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_1 - 111 HTH_28 PF13518.1 52 4.6e-05 16.2 0.0 1 1 5.3e-06 0.00016 14.5 0.0 8 33 79 104 73 109 0.82 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 7_1 - 235 HTH_28 PF13518.1 52 5.2e-05 16.0 1.2 1 1 7.6e-06 0.00023 14.0 1.2 22 36 40 54 13 55 0.76 # 64 # 768 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 4_3 - 92 HTH_28 PF13518.1 52 7.9e-05 15.4 0.0 1 1 4e-06 0.00012 14.8 0.0 4 35 55 86 53 90 0.90 # 862 # 1137 # -1 # ID=4_3;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_16 - 188 TIGR03533 TIGR03533 284 1.7e-05 16.7 0.0 1 1 2.9e-07 2.6e-05 16.1 0.0 114 210 43 133 36 141 0.87 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_16 - 188 TIGR03534 TIGR03534 253 3.1e-08 25.8 0.0 1 1 4.2e-10 3.7e-08 25.5 0.0 81 175 45 131 15 148 0.86 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_7 - 1757 UvrD_C_2 PF13538.1 104 1.2e-07 24.7 0.7 1 2 0.013 1.2 2.2 0.0 6 44 1227 1265 1223 1295 0.74 # 4257 # 9527 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_7 - 1757 UvrD_C_2 PF13538.1 104 1.2e-07 24.7 0.7 2 2 5.2e-08 4.7e-06 19.5 0.2 3 102 1341 1444 1339 1446 0.77 # 4257 # 9527 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 2_16 - 188 TIGR00755 TIGR00755 256 6.4e-09 27.9 0.0 1 1 9.5e-11 8.5e-09 27.4 0.0 8 105 29 123 25 134 0.90 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_5 - 321 StbA PF06406.6 318 7.2e-157 513.9 1.5 1 1 9e-159 8.1e-157 513.8 1.5 1 317 1 317 1 318 0.99 # 2763 # 3725 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 2_5 - 321 YbaB_DNA_bd PF02575.11 93 0.00053 12.7 0.1 1 3 0.038 3.4 0.5 0.0 33 63 129 160 112 160 0.80 # 2763 # 3725 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 2_5 - 321 YbaB_DNA_bd PF02575.11 93 0.00053 12.7 0.1 2 3 0.028 2.5 0.9 0.0 63 78 201 216 195 223 0.84 # 2763 # 3725 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 2_5 - 321 YbaB_DNA_bd PF02575.11 93 0.00053 12.7 0.1 3 3 0.00045 0.04 6.6 0.0 63 87 247 271 235 276 0.84 # 2763 # 3725 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 1_8 - 757 AAA_17 PF13207.1 121 0.0003 14.4 0.0 1 1 9.1e-06 0.00082 13.0 0.0 3 28 189 218 187 301 0.70 # 9527 # 11797 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_6 - 511 DZR PF12773.2 50 0.0048 9.5 4.2 1 2 0.00042 0.038 6.7 3.0 15 38 84 109 72 117 0.62 # 3757 # 5289 # 1 # ID=3_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 3_6 - 511 DZR PF12773.2 50 0.0048 9.5 4.2 2 2 0.032 2.9 0.6 0.0 14 21 460 467 452 481 0.67 # 3757 # 5289 # 1 # ID=3_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_7 - 1757 Viral_helicase1 PF01443.13 234 0.00034 12.9 0.0 1 2 0.00014 0.013 7.8 0.0 1 118 988 1121 988 1212 0.52 # 4257 # 9527 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_7 - 1757 Viral_helicase1 PF01443.13 234 0.00034 12.9 0.0 2 2 0.0066 0.59 2.3 0.0 171 234 1387 1447 1342 1447 0.63 # 4257 # 9527 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_26 - 877 Pox_A32 PF04665.7 241 0.00066 11.7 0.1 1 1 2.3e-05 0.0021 10.1 0.0 7 38 474 505 470 520 0.85 # 26041 # 28671 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_1 - 111 CENP-B_N PF04218.8 53 0.00034 12.8 0.1 1 1 2.5e-05 0.0022 10.2 0.1 26 47 87 108 72 109 0.86 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 1_8 - 757 T4SS-DNA_transf PF02534.9 469 6.9e-10 30.7 0.0 1 1 3.9e-11 1.8e-09 29.4 0.0 264 361 382 476 198 500 0.82 # 9527 # 11797 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_26 - 877 T4SS-DNA_transf PF02534.9 469 0.00029 12.2 0.0 1 2 0.0047 0.21 2.8 0.0 105 182 534 605 471 624 0.82 # 26041 # 28671 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_26 - 877 T4SS-DNA_transf PF02534.9 469 0.00029 12.2 0.0 2 2 0.00023 0.01 7.1 0.0 319 378 712 770 663 772 0.91 # 26041 # 28671 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_16 - 188 MTS PF05175.9 170 7.9e-10 31.1 0.0 1 1 1.2e-11 1.1e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_16 - 188 Methyltransf_23 PF13489.1 161 5.5e-05 15.7 0.0 1 1 1.6e-06 7e-05 15.3 0.0 9 120 38 153 27 174 0.78 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 3_3 - 252 Methyltransf_23 PF13489.1 161 0.00032 13.2 0.0 1 1 1.1e-05 0.00048 12.6 0.0 7 52 89 132 82 198 0.78 # 1733 # 2488 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 4_3 - 92 zinc_ribbon_5 PF13719.1 37 1e-05 17.9 2.9 1 1 3.2e-07 2.9e-05 16.4 2.9 3 36 6 40 5 41 0.83 # 862 # 1137 # -1 # ID=4_3;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 7_1 - 235 DDE_Tnp_IS240 PF13610.1 140 6.8e-53 171.2 0.0 1 1 1.1e-54 9.5e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 64 # 768 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_1 - 111 HTH_26 PF13443.1 63 0.00062 12.8 0.0 1 1 1.2e-05 0.001 12.0 0.0 6 34 79 107 75 110 0.90 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 3_1 - 111 HTH_17 PF12728.2 51 0.00079 12.5 1.0 1 2 0.015 1.3 2.2 0.1 25 43 58 76 44 79 0.80 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 3_1 - 111 HTH_17 PF12728.2 51 0.00079 12.5 1.0 2 2 0.00012 0.01 8.9 0.1 6 23 88 105 86 108 0.87 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 3_6 - 511 Zn-ribbon_8 PF09723.5 42 0.0036 10.1 6.7 1 2 0.0015 0.13 5.1 4.6 8 35 84 109 83 114 0.87 # 3757 # 5289 # 1 # ID=3_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 3_6 - 511 Zn-ribbon_8 PF09723.5 42 0.0036 10.1 6.7 2 2 0.0027 0.25 4.2 0.0 22 38 454 469 447 473 0.76 # 3757 # 5289 # 1 # ID=3_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 4_3 - 92 Zn_Tnp_IS1595 PF12760.2 46 0.00016 14.3 2.3 1 1 3.4e-06 0.00031 13.4 2.3 21 46 8 38 5 38 0.74 # 862 # 1137 # -1 # ID=4_3;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 3_1 - 111 TrmB PF01978.14 68 2.5e-05 16.8 0.0 1 1 4.6e-07 4.2e-05 16.0 0.0 19 44 80 105 74 106 0.89 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 1_26 - 877 AAA_10 PF12846.2 304 3.7e-49 160.5 0.0 1 1 1.5e-50 6.6e-49 159.6 0.0 1 294 480 769 480 775 0.89 # 26041 # 28671 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_8 - 757 AAA_10 PF12846.2 304 1.4e-10 33.8 0.0 1 1 6.5e-11 2.9e-09 29.5 0.0 3 296 187 494 186 500 0.68 # 9527 # 11797 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_1 - 111 HTH_20 PF12840.2 61 1.9e-05 17.2 0.1 1 1 2.4e-06 0.00021 13.8 0.1 2 43 34 102 33 106 0.92 # 188 # 520 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 2_16 - 188 RrnaAD PF00398.15 262 1.9e-08 26.4 0.0 1 1 2.7e-10 2.4e-08 26.0 0.0 9 113 29 128 24 148 0.87 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_16 - 188 Methyltransf_18 PF12847.2 112 2.7e-10 33.6 0.0 1 1 6.3e-12 5.6e-10 32.6 0.0 4 109 53 146 50 148 0.89 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 4_3 - 92 DUF2387 PF09526.5 71 0.00016 14.4 0.2 1 1 2.3e-06 0.0002 14.0 0.2 10 47 7 47 5 72 0.76 # 862 # 1137 # -1 # ID=4_3;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_7 - 1757 AAA_11 PF13086.1 236 0.00019 13.8 0.0 1 1 2.1e-06 0.00019 13.8 0.0 2 75 969 1039 968 1059 0.81 # 4257 # 9527 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 5_8 - 176 SSB PF00436.20 104 2.1e-41 132.8 0.4 1 1 3.4e-43 3e-41 132.3 0.4 1 101 6 109 6 112 0.96 # 4473 # 5000 # -1 # ID=5_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/a187b7e1-83db-4c32-b896-adb76d825ba6 # Target file: checkm_output/bins/pm1122/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1122/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a187b7e1-83db-4c32-b896-adb76d825ba6 checkm_output/bins/pm1122/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:35:12 2017 # [ok]