# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_22 - 332 ATP-synt_ab PF00006.20 215 0.00034 12.4 0.0 1 1 8.8e-06 0.00055 11.7 0.0 16 62 159 205 151 247 0.86 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 332 KaiC PF06745.8 227 0.00011 13.6 0.0 1 1 3e-06 0.00019 12.8 0.0 16 53 155 190 148 240 0.77 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_27 - 342 HTH_IclR PF09339.5 52 1.2e-05 17.1 0.1 1 1 5.1e-07 3.2e-05 15.8 0.1 15 40 14 39 10 40 0.86 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_22 - 332 ABC_tran PF00005.22 137 9.8e-07 21.4 0.0 1 1 7.4e-08 1.6e-06 20.8 0.0 6 45 153 192 150 257 0.87 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 260 ABC_tran PF00005.22 137 0.00033 13.2 0.2 1 1 6.1e-05 0.0013 11.3 0.1 8 31 98 121 95 132 0.86 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_15 - 867 ABC_tran PF00005.22 137 0.00043 12.9 0.0 1 1 6.8e-05 0.0014 11.2 0.0 14 38 494 518 481 550 0.83 # 8327 # 10927 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_63 - 190 HTH_22 PF13309.1 64 3e-06 19.2 0.1 1 1 2.9e-07 9.2e-06 17.7 0.1 45 62 168 185 166 187 0.92 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_27 - 342 HTH_22 PF13309.1 64 5.6e-05 15.2 0.0 1 1 3.6e-06 0.00011 14.2 0.0 44 64 19 39 16 39 0.94 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_56 - 422 HHH_5 PF14520.1 60 1.7e-07 23.6 0.6 1 1 7.4e-08 4.7e-06 19.0 0.6 8 55 181 278 177 282 0.65 # 44210 # 45475 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 1_27 - 342 rve_3 PF13683.1 67 3.6e-09 28.4 0.0 1 1 1.2e-10 7.6e-09 27.3 0.0 2 66 216 288 215 288 0.93 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_22 - 332 Sigma54_activat PF00158.21 168 5.3e-06 18.2 0.0 1 1 3.1e-07 9.8e-06 17.4 0.0 14 54 150 190 138 213 0.82 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_37 - 1079 Sigma54_activat PF00158.21 168 0.0001 14.0 0.4 1 1 9.5e-06 0.0003 12.5 0.4 8 130 480 600 473 606 0.79 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_27 - 342 HTH_DeoR PF08220.7 57 0.00027 12.8 1.2 1 1 1e-05 0.00065 11.5 0.5 9 34 13 37 4 40 0.82 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_22 - 332 FtsK_SpoIIIE PF01580.13 205 5.4e-07 21.5 0.0 1 1 5.1e-08 1.1e-06 20.5 0.0 38 64 158 184 139 191 0.81 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_15 - 867 FtsK_SpoIIIE PF01580.13 205 7.4e-06 17.8 0.0 1 1 8.1e-07 1.7e-05 16.6 0.0 21 62 462 515 445 522 0.82 # 8327 # 10927 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_38 - 510 FtsK_SpoIIIE PF01580.13 205 0.00041 12.1 0.0 1 1 3.4e-05 0.00071 11.3 0.0 39 59 124 147 95 153 0.78 # 33237 # 34766 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.438 1_27 - 342 HTH_38 PF13936.1 44 2.7e-11 35.2 0.8 1 1 2.7e-12 5.7e-11 34.1 0.8 5 42 2 39 1 40 0.97 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_63 - 190 HTH_38 PF13936.1 44 7e-06 17.9 0.0 1 1 1.1e-06 2.3e-05 16.2 0.0 4 39 148 184 145 185 0.93 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_40 - 129 HTH_38 PF13936.1 44 0.00019 13.3 0.0 1 1 1.2e-05 0.00026 12.9 0.0 5 31 12 41 8 45 0.83 # 35773 # 36159 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_63 - 190 SpoIIID PF12116.3 82 3.8e-05 15.9 0.1 1 2 0.037 2.4 0.5 0.0 33 55 8 30 4 38 0.84 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_63 - 190 SpoIIID PF12116.3 82 3.8e-05 15.9 0.1 2 2 5.8e-06 0.00037 12.7 0.0 11 42 157 188 149 189 0.82 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_22 - 332 MobB PF03205.9 140 6.2e-06 18.2 1.8 1 1 1.5e-07 9.4e-06 17.6 0.3 2 39 160 196 159 201 0.83 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_42 - 123 ATP_bind_2 PF03668.10 284 0.00023 12.5 0.2 1 1 5.9e-06 0.00037 11.8 0.1 47 91 60 104 47 109 0.88 # 36886 # 37254 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_63 - 190 NanE PF04131.9 192 8.1e-05 13.9 0.0 1 2 7.9e-05 0.005 8.0 0.0 47 88 9 57 1 69 0.71 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_63 - 190 NanE PF04131.9 192 8.1e-05 13.9 0.0 2 2 0.0017 0.11 3.7 0.0 58 141 83 161 74 177 0.71 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_27 - 342 HTH_8 PF02954.14 42 1.2e-05 17.1 0.6 1 1 3.3e-07 2.1e-05 16.3 0.1 12 37 11 36 5 40 0.91 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_22 - 332 Myosin_head PF00063.16 689 0.0001 12.7 0.0 1 1 2.2e-06 0.00014 12.2 0.0 84 110 157 183 147 209 0.90 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_63 - 190 TetR_N PF00440.18 47 0.00015 13.7 0.0 1 1 4.9e-06 0.00031 12.7 0.0 17 36 166 185 164 185 0.94 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_22 - 332 AAA_19 PF13245.1 76 0.0004 12.4 0.1 1 1 4.2e-05 0.00088 11.3 0.1 5 48 153 191 149 224 0.78 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 260 AAA_19 PF13245.1 76 0.00042 12.3 0.2 1 1 7.9e-05 0.0017 10.5 0.0 11 35 103 126 95 157 0.81 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_37 - 1079 AAA_19 PF13245.1 76 0.0015 10.6 3.7 1 2 0.00084 0.018 7.2 0.2 2 75 485 551 484 552 0.75 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_37 - 1079 AAA_19 PF13245.1 76 0.0015 10.6 3.7 2 2 0.041 0.86 1.7 0.0 17 32 706 721 705 731 0.82 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_41 - 239 CbiA PF01656.18 195 2.2e-06 19.4 0.6 1 1 1e-05 0.00033 12.3 0.6 64 164 47 141 3 168 0.69 # 36168 # 36884 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_26 - 260 CbiA PF01656.18 195 0.00061 11.5 0.0 1 1 2.5e-05 0.00079 11.1 0.0 3 42 105 145 104 254 0.75 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_27 - 342 Sigma70_r4_2 PF08281.7 54 1.1e-06 20.3 0.6 1 2 8.8e-08 5.5e-06 18.1 0.0 25 48 16 39 5 40 0.92 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_27 - 342 Sigma70_r4_2 PF08281.7 54 1.1e-06 20.3 0.6 2 2 0.044 2.7 -0.1 0.1 3 18 95 110 93 110 0.88 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_59 - 240 Rep_3 PF01051.16 222 4.5e-44 142.9 0.4 1 1 8.2e-46 5.2e-44 142.7 0.4 2 213 8 227 7 233 0.93 # 47333 # 48052 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 1_27 - 342 rve PF00665.21 120 3.3e-23 74.4 0.0 1 1 1.9e-24 1.2e-22 72.5 0.0 3 119 118 243 117 244 0.96 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_26 - 260 AFG1_ATPase PF03969.11 362 0.00019 12.5 0.0 1 1 5.8e-06 0.00037 11.6 0.0 64 214 103 251 81 258 0.78 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_22 - 332 AAA_23 PF13476.1 202 0.00029 13.4 0.1 1 1 2.8e-05 0.0006 12.4 0.1 19 39 158 178 149 184 0.85 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_15 - 867 AAA_23 PF13476.1 202 0.003 10.1 0.0 1 1 0.00014 0.003 10.1 0.0 22 39 494 511 464 521 0.84 # 8327 # 10927 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_16 - 238 AAA_23 PF13476.1 202 0.047 6.2 13.9 1 1 0.00027 0.0058 9.2 1.7 97 196 67 185 58 218 0.59 # 10945 # 11658 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.510 1_26 - 260 AAA_24 PF13479.1 213 0.00083 11.2 0.1 1 1 3e-05 0.0019 10.0 0.1 5 23 103 121 99 127 0.85 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_22 - 332 Zeta_toxin PF06414.7 201 9.6e-07 20.3 0.0 1 1 2.7e-08 1.7e-06 19.5 0.0 12 51 154 193 145 204 0.86 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_37 - 1079 AAA_30 PF13604.1 196 4.4e-53 172.0 7.6 1 1 5.1e-54 1.6e-52 170.2 6.4 1 192 477 660 477 663 0.97 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_22 - 332 AAA_30 PF13604.1 196 9.5e-05 14.3 0.1 1 2 4.7e-05 0.0015 10.4 0.1 11 51 151 190 145 197 0.80 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 332 AAA_30 PF13604.1 196 9.5e-05 14.3 0.1 2 2 0.024 0.74 1.6 0.0 121 178 204 258 191 272 0.77 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_27 - 342 HTH_Tnp_1 PF01527.15 76 5.1e-05 15.5 0.2 1 2 2.7e-05 0.0017 10.6 0.0 22 46 16 40 8 68 0.81 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_27 - 342 HTH_Tnp_1 PF01527.15 76 5.1e-05 15.5 0.2 2 2 0.011 0.7 2.2 0.0 35 58 284 311 275 330 0.73 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_27 - 342 GerE PF00196.14 58 0.00021 12.9 0.0 1 1 6.2e-06 0.00039 12.0 0.0 16 40 15 39 4 40 0.87 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_38 - 510 TraG-D_C PF12696.2 128 8.6e-22 69.7 0.0 1 1 2.2e-23 1.4e-21 69.0 0.0 1 127 350 471 350 472 0.80 # 33237 # 34766 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.438 1_26 - 260 Bac_DnaA PF00308.13 219 3.2e-09 28.9 0.0 1 1 7.8e-11 4.9e-09 28.4 0.0 36 136 103 201 90 209 0.84 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_6 - 308 DDE_Tnp_1 PF01609.16 213 1.6e-24 78.9 0.8 1 1 6.8e-26 2.1e-24 78.4 0.8 4 205 115 286 112 293 0.83 # 3916 # 4839 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.527 1_24 - 440 DDE_Tnp_1 PF01609.16 213 2.5e-19 61.9 0.0 1 2 0.037 1.2 0.9 0.0 6 41 138 172 135 227 0.77 # 17414 # 18733 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.615 1_24 - 440 DDE_Tnp_1 PF01609.16 213 2.5e-19 61.9 0.0 2 2 7.3e-20 2.3e-18 58.7 0.0 6 213 264 433 259 433 0.85 # 17414 # 18733 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.615 1_63 - 190 Sigma70_r4 PF04545.11 50 0.00011 13.8 0.0 1 2 0.056 1.8 0.3 0.0 31 40 148 157 144 160 0.85 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_63 - 190 Sigma70_r4 PF04545.11 50 0.00011 13.8 0.0 2 2 3.1e-05 0.00097 10.8 0.0 18 37 163 182 148 188 0.88 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_27 - 342 Sigma70_r4 PF04545.11 50 0.00019 13.0 0.6 1 1 1.5e-05 0.00049 11.7 0.6 18 40 15 37 3 40 0.82 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_26 - 260 AAA PF00004.24 132 1.3e-08 27.3 0.0 1 1 8.2e-10 2.6e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_37 - 1079 AAA PF00004.24 132 2.3e-06 20.1 1.0 1 1 2.5e-07 7.8e-06 18.4 0.1 4 111 500 600 497 617 0.74 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_22 - 332 Parvo_NS1 PF01057.12 272 0.00054 11.1 0.0 1 1 1.4e-05 0.0009 10.4 0.0 104 138 148 182 140 188 0.90 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_37 - 1079 Herpes_Helicase PF02689.9 819 1.4e-05 15.2 0.0 1 2 0.0014 0.087 2.7 0.0 173 208 539 574 515 584 0.81 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_37 - 1079 Herpes_Helicase PF02689.9 819 1.4e-05 15.2 0.0 2 2 9.3e-06 0.00058 9.9 0.0 739 782 850 894 831 914 0.80 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_63 - 190 MRP-L20 PF12824.2 164 2e-06 20.1 0.0 1 1 4.5e-08 2.8e-06 19.6 0.0 70 123 133 184 116 189 0.78 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_37 - 1079 Torsin PF06309.6 127 1.4e-05 17.3 0.0 1 1 6.1e-07 3.9e-05 15.8 0.0 19 85 460 526 452 537 0.83 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_63 - 190 MerR_1 PF13411.1 69 9e-05 14.5 0.4 1 2 0.0072 0.45 2.7 0.0 45 66 78 99 76 102 0.82 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_63 - 190 MerR_1 PF13411.1 69 9e-05 14.5 0.4 2 2 6.5e-05 0.0041 9.2 0.1 1 23 166 188 166 189 0.94 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_22 - 332 cobW PF02492.14 178 1.4e-06 20.1 0.0 1 1 4.1e-08 2.6e-06 19.2 0.0 3 45 161 202 159 257 0.77 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 332 AAA_16 PF13191.1 185 4.2e-07 22.3 0.0 1 1 3.4e-08 1.1e-06 21.0 0.0 24 61 158 195 149 274 0.82 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 260 AAA_16 PF13191.1 185 9.3e-06 18.0 2.4 1 2 2.4e-06 7.5e-05 15.0 0.1 23 51 100 128 86 149 0.80 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_26 - 260 AAA_16 PF13191.1 185 9.3e-06 18.0 2.4 2 2 0.071 2.2 0.4 0.0 124 162 143 175 125 192 0.74 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_22 - 332 AAA_22 PF13401.1 131 1.7e-07 23.7 0.0 1 1 2.4e-08 3.8e-07 22.6 0.0 3 54 157 202 153 241 0.74 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 260 AAA_22 PF13401.1 131 7.9e-07 21.6 0.0 1 2 1.7e-05 0.00026 13.4 0.1 4 28 101 125 98 148 0.75 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_26 - 260 AAA_22 PF13401.1 131 7.9e-07 21.6 0.0 2 2 0.0033 0.052 6.0 0.0 77 101 151 178 124 201 0.64 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_15 - 867 AAA_22 PF13401.1 131 3.7e-05 16.1 0.0 1 2 0.071 1.1 1.7 0.0 94 114 153 172 75 184 0.83 # 8327 # 10927 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_15 - 867 AAA_22 PF13401.1 131 3.7e-05 16.1 0.0 2 2 0.0001 0.0016 10.9 0.0 5 28 492 515 489 549 0.85 # 8327 # 10927 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_37 - 1079 AAA_22 PF13401.1 131 0.0004 12.8 0.2 1 1 0.0003 0.0047 9.3 0.2 4 125 494 598 490 603 0.81 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_26 - 260 TIGR00362 TIGR00362 437 1.5e-10 32.6 0.0 1 1 3.3e-12 2.1e-10 32.1 0.0 140 240 104 202 94 210 0.89 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_27 - 342 NUMOD1 PF07453.8 37 1.3e-05 17.3 0.1 1 1 6.8e-07 4.3e-05 15.6 0.0 17 37 18 38 15 38 0.95 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_22 - 332 AAA_29 PF13555.1 62 0.00063 11.6 0.0 1 1 2.3e-05 0.0015 10.4 0.0 19 43 157 178 145 188 0.75 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_27 - 342 HTH_Tnp_Tc3_1 PF11427.3 50 8.9e-07 20.8 0.0 1 1 2.8e-08 1.7e-06 19.9 0.0 13 45 10 42 3 46 0.90 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_27 - 342 HTH_Tnp_IS630 PF01710.11 120 0.00037 12.4 0.0 1 1 1.7e-05 0.001 11.0 0.0 16 57 15 56 8 76 0.77 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_26 - 260 AAA_28 PF13521.1 163 0.00016 13.9 0.0 1 1 5e-06 0.00031 13.0 0.0 1 49 103 156 103 171 0.73 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_16 - 238 Mnd1 PF03962.10 188 0.0013 10.7 9.9 1 2 0.00013 0.0082 8.0 0.5 105 139 34 64 20 86 0.71 # 10945 # 11658 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.510 1_16 - 238 Mnd1 PF03962.10 188 0.0013 10.7 9.9 2 2 0.00034 0.022 6.7 3.2 66 126 155 217 110 222 0.84 # 10945 # 11658 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.510 1_63 - 190 HTH_32 PF13565.1 77 1.6e-06 21.2 0.5 1 1 1e-07 6.6e-06 19.2 0.2 7 76 127 185 121 186 0.71 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_27 - 342 GntR PF00392.16 64 0.00015 13.5 0.0 1 1 1.2e-05 0.00073 11.3 0.0 26 45 19 38 15 40 0.88 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_27 - 342 HTH_3 PF01381.17 55 7.4e-05 14.9 0.0 1 1 2.4e-06 0.00015 13.9 0.0 7 32 15 40 9 57 0.83 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_27 - 342 HTH_23 PF13384.1 50 1.6e-09 29.5 0.4 1 1 5e-11 1.6e-09 29.5 0.4 13 39 13 39 8 44 0.91 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_63 - 190 HTH_23 PF13384.1 50 8e-06 17.7 0.0 1 1 8.2e-07 2.6e-05 16.1 0.0 12 37 160 185 151 188 0.84 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_63 - 190 HTH_7 PF02796.10 45 6.8e-18 56.6 0.1 1 1 1.1e-18 3.4e-17 54.4 0.1 1 44 144 188 144 189 0.98 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_27 - 342 HTH_7 PF02796.10 45 7e-09 27.8 0.1 1 1 4.5e-10 1.4e-08 26.8 0.1 12 44 8 40 2 41 0.89 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_40 - 129 Ribosomal_S20p PF01649.13 84 0.00018 14.2 0.1 1 1 4.9e-06 0.00031 13.4 0.1 6 47 56 97 53 115 0.77 # 35773 # 36159 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_27 - 342 HTH_29 PF13551.1 112 2.3e-06 20.0 1.1 1 1 2.4e-07 7.6e-06 18.4 0.0 7 35 13 40 8 72 0.86 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_63 - 190 HTH_29 PF13551.1 112 0.00045 12.7 3.2 1 2 0.0022 0.069 5.6 0.3 37 71 129 162 122 166 0.75 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_63 - 190 HTH_29 PF13551.1 112 0.00045 12.7 3.2 2 2 0.00028 0.0087 8.5 0.0 6 32 159 185 154 188 0.80 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_22 - 332 Arch_ATPase PF01637.13 234 5.8e-06 18.4 0.0 1 1 1.6e-07 1e-05 17.6 0.0 15 68 155 205 149 226 0.87 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_37 - 1079 PhoH PF02562.11 205 3.1e-09 28.6 5.3 1 2 1.4e-06 3e-05 15.5 0.4 5 39 478 514 475 536 0.80 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_37 - 1079 PhoH PF02562.11 205 3.1e-09 28.6 5.3 2 2 5e-06 0.0001 13.8 0.1 120 162 562 605 553 634 0.83 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_26 - 260 PhoH PF02562.11 205 2e-07 22.7 0.1 1 1 1.5e-08 3.1e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_22 - 332 PhoH PF02562.11 205 0.00019 12.9 0.0 1 1 1.7e-05 0.00035 12.1 0.0 14 45 153 184 143 210 0.79 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 260 AAA_5 PF07728.9 139 1.2e-05 17.4 0.0 1 1 4.6e-07 2.9e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_57 - 264 SprT-like PF10263.4 157 2.4e-37 120.2 0.0 1 1 5.3e-39 3.3e-37 119.8 0.0 1 150 12 236 12 262 0.92 # 45626 # 46417 # 1 # ID=1_57;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.521 1_22 - 332 ResIII PF04851.10 184 3.9e-06 19.1 0.0 1 1 9.6e-08 6.1e-06 18.4 0.0 22 61 148 196 104 202 0.81 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_38 - 510 TrwB_AAD_bind PF10412.4 386 6.6e-119 389.1 0.0 1 1 3.7e-120 7.8e-119 388.9 0.0 1 385 112 490 112 491 0.95 # 33237 # 34766 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.438 1_15 - 867 TrwB_AAD_bind PF10412.4 386 5.8e-07 20.6 1.6 1 2 1.5e-06 3.1e-05 14.9 0.0 16 51 492 527 484 536 0.92 # 8327 # 10927 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_15 - 867 TrwB_AAD_bind PF10412.4 386 5.8e-07 20.6 1.6 2 2 0.0042 0.089 3.5 0.0 102 168 741 806 720 812 0.79 # 8327 # 10927 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_22 - 332 TrwB_AAD_bind PF10412.4 386 8.6e-06 16.8 0.1 1 1 6.4e-07 1.3e-05 16.1 0.1 14 49 157 191 150 202 0.81 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 332 AAA_18 PF13238.1 129 3e-06 19.9 0.0 1 1 2e-07 6.1e-06 18.8 0.0 1 29 161 194 161 213 0.77 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_38 - 510 AAA_18 PF13238.1 129 8.1e-05 15.2 0.0 1 1 5.2e-06 0.00016 14.2 0.0 3 21 131 149 130 238 0.78 # 33237 # 34766 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.438 1_56 - 422 IMS_HHH PF11798.3 32 2.9e-07 22.6 0.0 1 1 1.4e-08 8.6e-07 21.2 0.0 4 32 171 199 168 199 0.85 # 44210 # 45475 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 1_24 - 440 DDE_Tnp_1_6 PF13751.1 125 2.5e-19 61.8 0.2 1 1 4e-21 2.5e-19 61.8 0.2 52 125 364 437 356 437 0.92 # 17414 # 18733 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.615 1_22 - 332 GvpD PF07088.6 484 1.6e-06 18.9 0.0 1 1 3.9e-08 2.4e-06 18.3 0.0 10 89 158 241 150 262 0.76 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_27 - 342 HTH_Tnp_IS1 PF12759.2 46 1.2e-05 17.0 0.1 1 1 3.6e-07 2.3e-05 16.1 0.1 17 43 13 39 3 41 0.83 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_22 - 332 DUF258 PF03193.11 161 7e-05 14.3 0.0 1 1 4.1e-06 0.00013 13.5 0.0 29 61 151 184 129 224 0.81 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 260 DUF258 PF03193.11 161 0.00013 13.4 0.0 1 1 7.3e-06 0.00023 12.6 0.0 26 59 92 125 80 153 0.82 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_38 - 510 DUF87 PF01935.12 229 6.9e-08 24.8 0.0 1 1 3.4e-09 1.1e-07 24.2 0.0 10 68 116 170 109 262 0.85 # 33237 # 34766 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.438 1_22 - 332 DUF87 PF01935.12 229 1.7e-06 20.3 0.0 1 1 9.7e-08 3e-06 19.4 0.0 9 61 144 195 138 196 0.78 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_27 - 342 HTH_28 PF13518.1 52 8.2e-07 21.3 1.6 1 1 3.9e-08 1.2e-06 20.7 0.3 9 34 14 39 10 40 0.89 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_63 - 190 HTH_28 PF13518.1 52 3.7e-05 16.0 0.0 1 1 4.8e-06 0.00015 14.0 0.0 13 32 166 185 159 188 0.87 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_27 - 342 DUF2089 PF09862.4 113 8.3e-05 14.7 0.0 1 1 2.3e-06 0.00014 13.9 0.0 34 70 2 38 1 45 0.94 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_63 - 190 HTH_24 PF13412.1 48 1.4e-05 16.7 0.0 1 2 0.074 2.3 0.0 0.0 30 46 74 90 69 91 0.88 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_63 - 190 HTH_24 PF13412.1 48 1.4e-05 16.7 0.0 2 2 3.9e-06 0.00012 13.7 0.0 9 38 157 186 157 188 0.92 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_27 - 342 HTH_24 PF13412.1 48 3.1e-05 15.6 0.1 1 1 1.8e-06 5.7e-05 14.8 0.1 11 39 12 39 10 40 0.87 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_22 - 332 Sigma54_activ_2 PF14532.1 138 1.4e-06 20.6 0.0 1 1 1e-07 3.2e-06 19.5 0.0 14 65 151 202 145 212 0.92 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 260 Sigma54_activ_2 PF14532.1 138 0.00025 13.4 0.0 1 1 1.3e-05 0.00039 12.7 0.0 9 64 87 144 84 229 0.70 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_27 - 342 HTH_30 PF13556.1 59 1.1e-05 17.3 0.4 1 1 4.1e-07 2.6e-05 16.1 0.4 6 34 11 39 10 40 0.90 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_42 - 123 TIGR00344 TIGR00344 847 0.00077 9.6 1.4 1 1 1.4e-05 0.00088 9.4 1.4 695 759 21 84 16 98 0.80 # 36886 # 37254 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_27 - 342 HTH_10 PF04967.7 53 0.0004 12.3 0.0 1 1 1.5e-05 0.00097 11.0 0.0 25 45 19 39 16 41 0.92 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_22 - 332 MMR_HSR1 PF01926.18 116 0.00027 13.2 0.0 1 1 7.1e-06 0.00045 12.5 0.0 2 41 161 205 160 310 0.84 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 332 DEAD PF00270.24 169 1.9e-06 19.7 0.0 1 1 5.7e-08 3.6e-06 18.8 0.0 13 70 157 211 144 242 0.78 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 332 DUF2075 PF09848.4 352 5.7e-05 14.4 0.0 1 1 1.3e-06 8.2e-05 13.9 0.0 1 32 158 187 158 216 0.76 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_37 - 1079 UvrD_C_2 PF13538.1 104 1.5e-16 52.7 0.1 1 1 1e-17 6.6e-16 50.7 0.1 2 102 797 896 796 898 0.76 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_27 - 342 HTH_36 PF13730.1 55 4.4e-05 15.9 0.0 1 1 1.4e-06 8.9e-05 14.9 0.0 27 47 19 39 11 40 0.93 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_22 - 332 T2SE PF00437.15 272 1.7e-52 170.1 0.1 1 1 6.5e-54 2e-52 169.9 0.1 3 271 10 311 8 312 0.94 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_38 - 510 T2SE PF00437.15 272 0.00055 11.1 0.1 1 1 3.1e-05 0.00097 10.3 0.1 130 149 128 147 103 160 0.84 # 33237 # 34766 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.438 1_22 - 332 NACHT PF05729.7 166 5.5e-05 15.1 0.0 1 1 3.8e-06 0.00012 14.0 0.0 1 27 159 185 159 188 0.90 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 260 NACHT PF05729.7 166 8e-05 14.6 0.0 1 1 4.1e-06 0.00013 13.9 0.0 3 49 104 151 102 200 0.81 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_22 - 332 UPF0079 PF02367.12 123 3.8e-06 18.8 0.0 1 1 1.2e-07 7.7e-06 17.8 0.0 9 45 152 188 145 193 0.85 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 332 AAA_17 PF13207.1 121 0.00024 14.2 0.1 1 1 3.8e-05 0.0006 12.9 0.1 2 40 161 195 160 229 0.75 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 260 AAA_17 PF13207.1 121 0.00024 14.2 0.0 1 1 2.6e-05 0.00041 13.4 0.0 2 26 104 131 103 216 0.74 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_38 - 510 AAA_17 PF13207.1 121 0.00035 13.7 0.1 1 1 9e-05 0.0014 11.7 0.0 4 42 131 191 129 260 0.58 # 33237 # 34766 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.438 1_15 - 867 AAA_17 PF13207.1 121 0.00052 13.1 4.6 1 1 0.0003 0.0047 10.0 0.0 3 21 495 513 494 565 0.80 # 8327 # 10927 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_22 - 332 AAA_7 PF12775.2 272 6.2e-05 14.4 0.0 1 1 2.3e-06 0.00015 13.2 0.0 25 64 150 189 139 209 0.86 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 332 TIGR03346 TIGR03346 853 9.3e-05 12.8 0.0 1 1 2e-06 0.00013 12.3 0.0 598 641 161 204 149 238 0.89 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 260 AAA_25 PF13481.1 194 4.5e-07 21.7 0.1 1 1 2.2e-08 1.4e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_37 - 1079 Viral_helicase1 PF01443.13 234 6.2e-15 47.6 5.7 1 2 2.6e-08 1.7e-06 20.0 0.0 3 104 499 605 497 640 0.73 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_37 - 1079 Viral_helicase1 PF01443.13 234 6.2e-15 47.6 5.7 2 2 3e-11 1.9e-09 29.6 0.5 157 234 818 899 774 899 0.74 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_22 - 332 Pox_A32 PF04665.7 241 6.3e-05 14.6 0.0 1 1 1.7e-06 0.00011 13.8 0.0 12 46 157 191 150 210 0.85 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 260 AAA_14 PF13173.1 128 2.2e-07 23.1 0.0 1 1 5.1e-08 1.1e-06 20.9 0.0 3 97 102 203 100 219 0.64 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_38 - 510 AAA_14 PF13173.1 128 7.8e-06 18.1 0.0 1 2 6.5e-06 0.00014 14.1 0.0 6 89 130 213 125 234 0.76 # 33237 # 34766 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.438 1_38 - 510 AAA_14 PF13173.1 128 7.8e-06 18.1 0.0 2 2 0.065 1.4 1.1 0.0 53 81 340 372 300 391 0.57 # 33237 # 34766 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.438 1_22 - 332 AAA_14 PF13173.1 128 0.00017 13.7 0.1 1 2 0.0067 0.14 4.3 0.0 64 96 135 165 98 166 0.69 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 332 AAA_14 PF13173.1 128 0.00017 13.7 0.1 2 2 9.2e-05 0.0019 10.4 0.0 2 35 158 191 157 215 0.80 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_27 - 342 HTH_Tnp_ISL3 PF13542.1 52 1.9e-05 16.1 0.3 1 1 7e-07 4.4e-05 14.9 0.3 23 50 13 40 9 40 0.87 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_22 - 332 AAA_33 PF13671.1 143 0.00022 13.3 0.0 1 1 5.9e-06 0.00037 12.6 0.0 2 26 161 188 160 256 0.81 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_38 - 510 T4SS-DNA_transf PF02534.9 469 3.4e-12 37.8 0.0 1 1 7.9e-14 5e-12 37.3 0.0 263 426 313 472 297 500 0.74 # 33237 # 34766 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.438 1_22 - 332 RNA_helicase PF00910.17 107 1.3e-05 17.7 0.1 1 2 3.5e-06 0.00022 13.7 0.0 1 25 161 185 161 242 0.75 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 332 RNA_helicase PF00910.17 107 1.3e-05 17.7 0.1 2 2 0.027 1.7 1.2 0.1 69 100 290 322 281 328 0.78 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 332 AAA_2 PF07724.9 171 3.6e-06 19.2 0.0 1 1 1e-07 6.5e-06 18.4 0.0 3 54 158 204 156 216 0.89 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 260 NTPase_1 PF03266.10 168 0.00015 13.8 0.1 1 2 0.0015 0.096 4.6 0.1 2 30 104 132 103 143 0.82 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_26 - 260 NTPase_1 PF03266.10 168 0.00015 13.8 0.1 2 2 0.0003 0.019 6.9 0.0 87 108 155 176 141 202 0.77 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_2 - 478 DNA_methylase PF00145.12 335 1.2e-79 260.1 0.0 1 1 4.4e-81 2.8e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 1408 # 2841 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.480 1_3 - 89 DDE_Tnp_IS1 PF03400.8 131 2.4e-47 152.5 0.4 1 1 4.2e-49 2.7e-47 152.4 0.4 44 131 1 88 1 88 0.99 # 2946 # 3212 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_16 - 238 3HCDH_N PF02737.13 180 0.00083 11.3 1.9 1 2 0.00032 0.02 6.8 0.1 68 118 33 83 18 86 0.84 # 10945 # 11658 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.510 1_16 - 238 3HCDH_N PF02737.13 180 0.00083 11.3 1.9 2 2 0.0023 0.14 4.0 0.2 41 80 143 180 111 210 0.68 # 10945 # 11658 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.510 1_27 - 342 HTH_17 PF12728.2 51 9.4e-05 14.9 0.0 1 1 8.7e-06 0.00028 13.4 0.0 4 24 20 40 19 50 0.88 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_63 - 190 HTH_17 PF12728.2 51 0.00014 14.3 0.1 1 1 9.7e-06 0.00031 13.3 0.1 2 22 166 186 165 188 0.93 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_63 - 190 HTH_11 PF08279.7 55 9.6e-07 20.7 0.1 1 1 9.3e-08 2.9e-06 19.2 0.0 6 35 157 185 154 187 0.84 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_27 - 342 HTH_11 PF08279.7 55 3.5e-06 18.9 0.4 1 1 2.3e-07 7.2e-06 17.9 0.4 4 37 6 39 3 40 0.81 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_6 - 308 DDE_Tnp_1_5 PF13737.1 112 2.3e-47 152.1 0.1 1 2 5e-48 3.2e-46 148.4 0.0 1 112 19 130 19 130 0.96 # 3916 # 4839 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.527 1_6 - 308 DDE_Tnp_1_5 PF13737.1 112 2.3e-47 152.1 0.1 2 2 0.037 2.3 0.7 0.0 42 68 263 291 250 297 0.81 # 3916 # 4839 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.527 1_27 - 342 Sigma70_ECF PF07638.6 185 0.00025 13.0 0.0 1 1 8.2e-06 0.00051 12.0 0.0 140 172 4 38 2 46 0.82 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_37 - 1079 PIF1 PF05970.9 364 1.3e-06 19.8 0.1 1 2 1.3e-07 8.5e-06 17.1 0.0 2 65 478 537 477 587 0.85 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_37 - 1079 PIF1 PF05970.9 364 1.3e-06 19.8 0.1 2 2 0.087 5.5 -2.0 0.0 334 363 795 823 782 824 0.84 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_63 - 190 TrmB PF01978.14 68 2.6e-05 16.2 0.0 1 1 8.4e-07 5.3e-05 15.2 0.0 6 42 149 185 146 188 0.92 # 52432 # 53001 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_37 - 1079 Helicase_RecD PF05127.9 177 9.9e-06 17.5 5.1 1 2 0.00059 0.037 5.9 0.1 122 146 498 522 481 539 0.76 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_37 - 1079 Helicase_RecD PF05127.9 177 9.9e-06 17.5 5.1 2 2 5.1e-06 0.00032 12.6 0.1 74 115 547 586 523 653 0.62 # 30001 # 33237 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_27 - 342 LacI PF00356.16 46 2.1e-05 16.4 0.2 1 1 1.2e-06 7.4e-05 14.6 0.0 2 25 20 43 19 50 0.86 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_15 - 867 AAA_10 PF12846.2 304 1.6e-35 115.2 0.1 1 1 3.2e-36 5e-35 113.6 0.0 2 292 492 772 491 780 0.84 # 8327 # 10927 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_38 - 510 AAA_10 PF12846.2 304 3.4e-07 22.2 0.1 1 2 2.8e-05 0.00043 12.0 0.1 3 41 128 166 126 177 0.92 # 33237 # 34766 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.438 1_38 - 510 AAA_10 PF12846.2 304 3.4e-07 22.2 0.1 2 2 0.00045 0.0071 8.0 0.0 214 286 339 414 307 431 0.75 # 33237 # 34766 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.438 1_26 - 260 AAA_10 PF12846.2 304 2.3e-05 16.1 0.2 1 2 0.058 0.91 1.1 0.0 106 155 28 69 4 89 0.61 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_26 - 260 AAA_10 PF12846.2 304 2.3e-05 16.1 0.2 2 2 1.8e-05 0.00028 12.6 0.1 3 35 103 135 101 172 0.84 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_22 - 332 AAA_10 PF12846.2 304 0.00017 13.3 0.0 1 1 1.6e-05 0.00026 12.7 0.0 3 29 160 185 158 233 0.81 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_27 - 342 HTH_20 PF12840.2 61 4.8e-05 15.4 0.0 1 1 2e-06 0.00012 14.1 0.0 18 46 12 39 10 40 0.91 # 21027 # 22052 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_26 - 260 IstB_IS21 PF01695.12 178 5.4e-66 213.6 0.0 1 1 4.4e-67 1.4e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 20251 # 21030 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_22 - 332 IstB_IS21 PF01695.12 178 1.7e-05 16.5 0.0 1 1 8.9e-07 2.8e-05 15.8 0.0 44 73 155 184 127 201 0.82 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_56 - 422 DNA_pol_lambd_f PF10391.4 52 1.4e-06 20.1 0.1 1 2 3e-07 1.9e-05 16.5 0.0 6 35 182 211 180 216 0.84 # 44210 # 45475 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 1_56 - 422 DNA_pol_lambd_f PF10391.4 52 1.4e-06 20.1 0.1 2 2 0.048 3 -0.2 0.0 6 20 265 279 256 283 0.80 # 44210 # 45475 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 1_22 - 332 GTP_EFTU PF00009.22 188 0.00014 13.6 0.2 1 1 3.5e-06 0.00022 12.9 0.2 2 32 157 187 156 205 0.83 # 15963 # 16958 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/653899ed-49ce-4ca0-83fb-600aa87e5b27 # Target file: checkm_output/bins/pm1115/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1115/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/653899ed-49ce-4ca0-83fb-600aa87e5b27 checkm_output/bins/pm1115/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:35:07 2017 # [ok]