# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_23 - 388 KaiC PF06745.8 227 0.00078 11.4 0.0 1 1 1.5e-05 0.0014 10.6 0.0 14 59 147 191 137 201 0.76 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 4_2 - 304 HTH_IclR PF09339.5 52 1.7e-05 17.2 0.3 1 3 3.4e-06 0.00031 13.1 0.1 17 45 15 43 5 52 0.81 # 451 # 1362 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 4_2 - 304 HTH_IclR PF09339.5 52 1.7e-05 17.2 0.3 2 3 0.047 4.4 -0.1 0.0 10 25 47 62 46 65 0.85 # 451 # 1362 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 4_2 - 304 HTH_IclR PF09339.5 52 1.7e-05 17.2 0.3 3 3 0.051 4.7 -0.2 0.0 12 30 172 190 170 194 0.80 # 451 # 1362 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_23 - 388 ABC_tran PF00005.22 137 0.00013 15.1 0.0 1 1 2.7e-06 0.00025 14.2 0.0 16 33 157 174 149 217 0.83 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 FtsK_SpoIIIE PF01580.13 205 9.2e-05 14.8 0.0 1 1 1.9e-06 0.00018 13.8 0.0 41 59 155 173 129 184 0.85 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 MobB PF03205.9 140 0.00047 12.7 0.0 1 1 1e-05 0.00097 11.7 0.0 4 25 156 177 154 190 0.85 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 2_18 - 83 HTH_8 PF02954.14 42 9.4e-06 18.0 0.1 1 1 1.8e-07 1.7e-05 17.2 0.1 18 36 14 32 13 33 0.92 # 8657 # 8905 # 1 # ID=2_18;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_38 - 1017 AAA_19 PF13245.1 76 0.00048 12.7 0.0 1 1 1.6e-05 0.0015 11.1 0.0 14 31 492 508 481 518 0.90 # 24160 # 27210 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_23 - 388 AAA_23 PF13476.1 202 1.8e-06 21.2 0.1 1 1 4.2e-08 3.9e-06 20.1 0.0 19 44 152 177 140 226 0.87 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_18 - 122 CPSase_L_D3 PF02787.14 123 0.00071 12.2 0.2 1 1 1.1e-05 0.001 11.6 0.2 50 96 45 91 21 103 0.79 # 8477 # 8842 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.426 1_23 - 388 SMC_N PF02463.14 220 0.0011 11.0 0.0 1 1 2.1e-05 0.002 10.2 0.0 26 50 154 178 147 195 0.81 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_45 - 696 TraG-D_C PF12696.2 128 0.00013 14.7 0.1 1 1 2.4e-06 0.00022 13.9 0.1 3 94 437 524 435 556 0.78 # 34881 # 36968 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 5_1 - 396 DDE_Tnp_1 PF01609.16 213 1.7e-28 92.4 0.0 1 1 2.6e-30 2.4e-28 91.9 0.0 3 212 83 323 81 324 0.93 # 14 # 1201 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 2_12 - 396 ACT PF01842.20 66 4.7e-05 15.7 0.4 1 3 0.038 3.5 0.1 0.0 13 27 203 217 203 217 0.90 # 4384 # 5571 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.603 2_12 - 396 ACT PF01842.20 66 4.7e-05 15.7 0.4 2 3 1.7e-05 0.0016 10.8 0.1 7 27 290 310 287 310 0.93 # 4384 # 5571 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.603 2_12 - 396 ACT PF01842.20 66 4.7e-05 15.7 0.4 3 3 0.076 7.1 -0.9 0.0 30 59 336 363 334 365 0.74 # 4384 # 5571 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.603 2_18 - 83 HTH_37 PF13744.1 80 4e-05 16.2 0.0 1 1 1.8e-06 8.2e-05 15.2 0.0 24 54 7 37 4 46 0.89 # 8657 # 8905 # 1 # ID=2_18;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 2_11 - 91 HTH_37 PF13744.1 80 0.0008 12.1 0.0 1 1 2.4e-05 0.0011 11.6 0.0 25 53 22 50 19 54 0.92 # 4093 # 4365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 2_23 - 325 Hydantoinase_A PF01968.13 290 3.7e-08 25.5 2.0 1 2 5e-07 4.6e-05 15.4 0.1 67 96 158 186 144 195 0.82 # 11212 # 12186 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 2_23 - 325 Hydantoinase_A PF01968.13 290 3.7e-08 25.5 2.0 2 2 3.2e-05 0.0029 9.5 0.2 212 265 248 301 191 322 0.76 # 11212 # 12186 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_23 - 388 AAA_16 PF13191.1 185 0.00082 12.2 0.0 1 1 1.8e-05 0.0017 11.2 0.0 26 50 154 178 140 211 0.85 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 AAA_22 PF13401.1 131 2.7e-06 20.4 0.0 1 1 1.4e-07 6.6e-06 19.1 0.0 4 30 152 178 149 243 0.84 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_38 - 1017 AAA_22 PF13401.1 131 0.00019 14.4 0.0 1 1 1.3e-05 0.00062 12.7 0.0 8 73 492 561 486 594 0.70 # 24160 # 27210 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_4 - 287 Methyltransf_27 PF13708.1 194 1.3e-68 223.2 0.0 1 1 2.3e-70 2.1e-68 222.5 0.0 2 194 89 282 88 282 0.97 # 1977 # 2837 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_23 - 388 AAA_29 PF13555.1 62 8.2e-06 18.1 0.1 1 1 2.2e-07 2e-05 16.9 0.1 26 43 155 172 147 175 0.84 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 4_2 - 304 HTH_1 PF00126.22 60 2e-19 62.0 0.7 1 1 3.7e-21 3.4e-19 61.2 0.7 2 59 5 62 4 63 0.96 # 451 # 1362 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 2_18 - 83 HTH_3 PF01381.17 55 1.7e-09 30.2 0.1 1 1 1.2e-10 2.9e-09 29.5 0.1 4 45 9 50 6 56 0.86 # 8657 # 8905 # 1 # ID=2_18;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 2_32 - 89 HTH_3 PF01381.17 55 1e-06 21.4 0.0 1 1 5.6e-08 1.3e-06 21.0 0.0 8 36 41 69 33 78 0.88 # 16121 # 16387 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 2_11 - 91 HTH_3 PF01381.17 55 5.8e-05 15.7 0.0 1 1 3.6e-06 8.4e-05 15.2 0.0 2 32 21 51 21 55 0.90 # 4093 # 4365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 2_27 - 160 HTH_3 PF01381.17 55 0.00014 14.6 0.1 1 2 0.0029 0.068 5.9 0.0 2 20 15 33 14 37 0.91 # 13822 # 14301 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 2_27 - 160 HTH_3 PF01381.17 55 0.00014 14.6 0.1 2 2 0.0022 0.051 6.3 0.0 1 23 96 118 96 120 0.89 # 13822 # 14301 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 2_32 - 89 HTH_23 PF13384.1 50 6.5e-06 18.6 0.0 1 1 3.2e-07 9.9e-06 18.0 0.0 16 39 38 64 33 68 0.83 # 16121 # 16387 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 2_11 - 91 HTH_23 PF13384.1 50 7.5e-06 18.4 0.1 1 1 4e-07 1.2e-05 17.7 0.1 12 38 23 49 19 54 0.85 # 4093 # 4365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 2_18 - 83 HTH_23 PF13384.1 50 4.1e-05 16.0 0.0 1 1 2.6e-06 8.1e-05 15.1 0.0 15 34 10 31 6 40 0.81 # 8657 # 8905 # 1 # ID=2_18;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 2_18 - 83 HTH_19 PF12844.2 64 3.7e-08 26.2 0.0 1 1 1.7e-09 5.4e-08 25.7 0.0 8 45 10 47 8 56 0.86 # 8657 # 8905 # 1 # ID=2_18;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 2_11 - 91 HTH_19 PF12844.2 64 8.1e-06 18.7 0.0 1 1 3.4e-07 1.1e-05 18.3 0.0 5 35 21 51 21 66 0.92 # 4093 # 4365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 2_32 - 89 HTH_19 PF12844.2 64 7.8e-05 15.5 0.0 1 1 3.4e-06 0.00011 15.1 0.0 4 39 33 69 30 73 0.85 # 16121 # 16387 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_45 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 1 3 1.7e-05 0.0016 9.8 0.0 16 36 134 154 125 158 0.88 # 34881 # 36968 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_45 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 2 3 9.3e-05 0.0086 7.4 0.1 93 140 235 281 229 303 0.80 # 34881 # 36968 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_45 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 3 3 0.083 7.7 -2.3 0.0 293 323 482 512 405 546 0.58 # 34881 # 36968 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_38 - 1017 AAA_18 PF13238.1 129 7.9e-05 15.8 1.3 1 1 3.5e-06 0.00033 13.8 0.0 2 19 492 509 492 571 0.76 # 24160 # 27210 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 2_6 - 435 IMS_HHH PF11798.3 32 0.00046 13.1 0.0 1 1 1.5e-05 0.0014 11.6 0.0 12 32 192 212 182 212 0.83 # 1512 # 2816 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.591 1_23 - 388 DUF87 PF01935.12 229 8.5e-05 15.2 0.0 1 1 1.8e-06 0.00017 14.2 0.0 28 45 157 174 155 188 0.89 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 2_32 - 89 HTH_28 PF13518.1 52 5.8e-05 15.9 0.0 1 1 1.7e-06 8.1e-05 15.4 0.0 7 34 34 64 33 68 0.82 # 16121 # 16387 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 2_18 - 83 HTH_28 PF13518.1 52 0.00039 13.3 0.1 1 1 1.8e-05 0.00085 12.2 0.1 8 29 8 31 6 35 0.78 # 8657 # 8905 # 1 # ID=2_18;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_23 - 388 Miro PF08477.8 119 0.00088 12.6 0.0 1 1 2.1e-05 0.002 11.5 0.0 4 28 157 186 156 220 0.72 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 2_18 - 83 HTH_31 PF13560.1 64 1.8e-09 30.6 0.9 1 1 9.9e-11 2.3e-09 30.2 0.9 9 56 9 55 6 72 0.90 # 8657 # 8905 # 1 # ID=2_18;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 2_11 - 91 HTH_31 PF13560.1 64 2.6e-07 23.6 0.4 1 1 1.8e-08 4.3e-07 22.9 0.3 7 36 21 50 17 65 0.89 # 4093 # 4365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 2_27 - 160 HTH_31 PF13560.1 64 6.3e-07 22.4 1.2 1 2 0.0047 0.11 5.6 0.0 6 33 14 41 12 48 0.88 # 13822 # 14301 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 2_27 - 160 HTH_31 PF13560.1 64 6.3e-07 22.4 1.2 2 2 3.7e-06 8.6e-05 15.6 0.3 4 39 94 129 91 135 0.88 # 13822 # 14301 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 2_32 - 89 HTH_31 PF13560.1 64 1.9e-06 20.9 0.0 1 1 1.1e-07 2.6e-06 20.4 0.0 2 42 29 69 28 80 0.84 # 16121 # 16387 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_38 - 1017 DUF2075 PF09848.4 352 0.00033 12.5 0.0 1 1 1.1e-05 0.001 10.8 0.0 5 22 492 509 489 537 0.87 # 24160 # 27210 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_23 - 388 T2SE PF00437.15 272 2.7e-23 75.0 0.0 1 1 4.6e-25 4.3e-23 74.3 0.0 11 269 24 303 15 306 0.78 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 2_23 - 325 StbA PF06406.6 318 6.7e-157 514.1 0.2 1 1 8.1e-159 7.5e-157 513.9 0.2 1 318 1 322 1 322 0.99 # 11212 # 12186 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_23 - 388 NACHT PF05729.7 166 0.00031 13.2 0.0 1 1 6.6e-06 0.00062 12.3 0.0 4 29 156 181 154 188 0.83 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_38 - 1017 AAA_17 PF13207.1 121 5.7e-05 16.8 0.0 1 1 4.3e-06 0.0004 14.0 0.0 3 27 492 522 492 581 0.72 # 24160 # 27210 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_23 - 388 AAA_25 PF13481.1 194 5.4e-06 18.7 0.0 1 1 1.3e-07 1.2e-05 17.6 0.0 24 53 143 172 120 178 0.86 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_11 - 147 RepA_N PF06970.6 76 0.00074 12.1 0.0 1 1 1.6e-05 0.0015 11.2 0.0 15 44 56 85 53 90 0.92 # 5290 # 5730 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 2_23 - 325 Hydant_A_N PF05378.8 176 0.00061 12.1 3.4 1 4 0.069 6.4 -1.0 0.0 1 19 2 20 2 52 0.83 # 11212 # 12186 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 2_23 - 325 Hydant_A_N PF05378.8 176 0.00061 12.1 3.4 2 4 0.057 5.3 -0.7 0.0 108 154 38 86 17 98 0.66 # 11212 # 12186 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 2_23 - 325 Hydant_A_N PF05378.8 176 0.00061 12.1 3.4 3 4 0.057 5.3 -0.7 0.0 95 129 113 147 89 153 0.76 # 11212 # 12186 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 2_23 - 325 Hydant_A_N PF05378.8 176 0.00061 12.1 3.4 4 4 3.6e-05 0.0034 9.7 0.2 2 51 170 217 169 226 0.82 # 11212 # 12186 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 2_32 - 89 HTH_Tnp_ISL3 PF13542.1 52 0.00034 12.6 0.0 1 1 5e-06 0.00046 12.2 0.0 19 49 35 64 33 65 0.91 # 16121 # 16387 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 2_32 - 89 CENP-B_N PF04218.8 53 0.0013 11.0 0.0 1 1 1.9e-05 0.0018 10.6 0.0 24 49 44 69 34 72 0.88 # 16121 # 16387 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_23 - 388 Ribosomal_S5 PF00333.15 67 2.8e-05 16.7 0.1 1 2 0.00091 0.085 5.5 0.0 26 45 84 103 76 114 0.83 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 Ribosomal_S5 PF00333.15 67 2.8e-05 16.7 0.1 2 2 0.00012 0.011 8.4 0.0 21 54 242 274 230 278 0.91 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 RNA_helicase PF00910.17 107 0.001 12.1 0.0 1 1 2.5e-05 0.0023 10.9 0.0 3 26 157 180 156 197 0.81 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 2_11 - 91 Mor PF08765.6 108 0.00069 12.2 0.0 1 1 9.2e-06 0.00085 11.9 0.0 71 93 27 49 18 57 0.85 # 4093 # 4365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 2_32 - 89 Phage_CII PF05269.6 91 0.00067 12.5 0.0 1 1 9.2e-06 0.00085 12.2 0.0 17 45 36 64 32 81 0.83 # 16121 # 16387 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_23 - 388 ATP_bind_1 PF03029.12 238 0.00076 11.8 0.0 1 1 1.3e-05 0.0012 11.2 0.0 1 25 157 181 157 191 0.84 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_28 - 66 DDE_Tnp_IS240 PF13610.1 140 0.00024 13.9 0.0 1 1 2.8e-06 0.00026 13.8 0.0 29 64 18 52 5 58 0.83 # 18052 # 18249 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 2_11 - 91 HTH_26 PF13443.1 63 0.00011 15.3 0.0 1 1 3.3e-06 0.00015 14.8 0.0 4 34 22 52 21 56 0.91 # 4093 # 4365 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.663 2_32 - 89 HTH_26 PF13443.1 63 0.00025 14.1 0.0 1 1 7.2e-06 0.00033 13.7 0.0 11 47 43 78 33 82 0.90 # 16121 # 16387 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 4_2 - 304 MarR_2 PF12802.2 62 0.00012 14.6 0.1 1 1 8e-06 0.00074 12.0 0.1 25 48 20 43 8 52 0.89 # 451 # 1362 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 2_32 - 89 HTH_Crp_2 PF13545.1 76 0.00042 12.9 0.0 1 1 6.6e-06 0.00061 12.4 0.0 26 50 40 64 32 65 0.88 # 16121 # 16387 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_38 - 1017 AAA_10 PF12846.2 304 7.7e-41 133.2 0.1 1 1 5.5e-42 1.7e-40 132.1 0.0 5 297 492 884 489 889 0.91 # 24160 # 27210 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_45 - 696 AAA_10 PF12846.2 304 5.8e-10 31.8 0.0 1 1 2.8e-11 8.7e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 34881 # 36968 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_23 - 388 AAA_10 PF12846.2 304 1.3e-06 20.8 0.0 1 1 2.5e-07 7.7e-06 18.3 0.0 3 27 154 178 152 196 0.74 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_14 - 145 SSB PF00436.20 104 6.9e-31 99.1 0.3 1 1 8.5e-33 8e-31 98.9 0.3 2 103 7 111 6 112 0.96 # 6505 # 6939 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.487 1_23 - 388 GTP_EFTU PF00009.22 188 0.00099 11.4 0.0 1 1 2e-05 0.0018 10.5 0.0 8 34 157 183 155 195 0.87 # 12701 # 13864 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/bbc199e5-ea61-4746-9bad-8a85c671b993 # Target file: checkm_output/bins/pm1114/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1114/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bbc199e5-ea61-4746-9bad-8a85c671b993 checkm_output/bins/pm1114/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:35:06 2017 # [ok]