# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_18 - 228 Cons_hypoth95 PF03602.10 183 1.1e-05 17.6 0.0 1 2 0.00039 0.037 6.2 0.0 112 146 18 54 9 81 0.65 # 15874 # 16557 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_18 - 228 Cons_hypoth95 PF03602.10 183 1.1e-05 17.6 0.0 2 2 3.9e-05 0.0037 9.5 0.0 41 62 162 183 145 219 0.78 # 15874 # 16557 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_82 - 518 ABC_tran PF00005.22 137 8.3e-05 15.7 0.1 1 1 5.3e-06 0.00025 14.2 0.0 12 37 226 251 217 288 0.81 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_70 - 383 ABC_tran PF00005.22 137 0.00019 14.6 0.0 1 1 7.7e-06 0.00036 13.7 0.0 16 34 162 180 152 221 0.85 # 62195 # 63343 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_18 - 228 TIGR00095 TIGR00095 194 0.00027 13.1 0.0 1 2 0.0015 0.14 4.3 0.0 123 138 19 34 8 78 0.75 # 15874 # 16557 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_18 - 228 TIGR00095 TIGR00095 194 0.00027 13.1 0.0 2 2 0.00024 0.023 6.8 0.0 53 86 164 199 155 218 0.77 # 15874 # 16557 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_11 - 424 HHH_5 PF14520.1 60 0.00028 13.9 0.0 1 1 9.2e-06 0.00086 12.3 0.0 9 37 184 212 175 229 0.93 # 10037 # 11308 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_70 - 383 FtsK_SpoIIIE PF01580.13 205 0.00088 11.6 0.0 1 1 1.7e-05 0.0016 10.7 0.0 41 60 160 179 137 189 0.87 # 62195 # 63343 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_70 - 383 MobB PF03205.9 140 2e-05 17.2 0.0 1 2 0.033 1.6 1.3 0.0 14 60 61 108 61 127 0.88 # 62195 # 63343 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_70 - 383 MobB PF03205.9 140 2e-05 17.2 0.0 2 2 6.8e-06 0.00032 13.2 0.0 5 29 162 185 160 195 0.83 # 62195 # 63343 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_10 - 209 MobB PF03205.9 140 5.3e-05 15.8 0.1 1 1 3.2e-06 0.00015 14.3 0.0 10 42 11 41 1 46 0.79 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_31 - 199 TilS_C PF11734.3 74 0.00016 13.7 0.0 1 1 5.1e-06 0.00048 12.2 0.0 29 45 7 23 6 28 0.88 # 24357 # 24953 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_82 - 518 AAA_19 PF13245.1 76 8.9e-05 15.1 0.0 1 1 5.3e-06 0.00025 13.7 0.0 10 46 226 259 218 268 0.79 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_10 - 209 AAA_19 PF13245.1 76 0.00027 13.5 0.1 1 2 0.00019 0.0091 8.6 0.0 20 48 11 35 9 44 0.84 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_10 - 209 AAA_19 PF13245.1 76 0.00027 13.5 0.1 2 2 0.021 1 2.1 0.0 42 63 135 158 118 184 0.76 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_10 - 209 CbiA PF01656.18 195 1.7e-22 72.6 0.0 1 1 3.1e-24 2.9e-22 71.8 0.0 1 158 3 141 3 179 0.75 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_18 - 228 MethyltransfD12 PF02086.10 260 0.0004 12.7 0.0 1 2 0.015 1.4 1.0 0.0 175 188 18 31 8 92 0.82 # 15874 # 16557 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_18 - 228 MethyltransfD12 PF02086.10 260 0.0004 12.7 0.0 2 2 4e-05 0.0038 9.5 0.0 20 46 163 189 148 197 0.78 # 15874 # 16557 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_94 - 96 Sigma70_r4_2 PF08281.7 54 4e-08 25.5 0.2 1 2 0.099 9.3 -1.3 0.0 6 14 4 12 3 13 0.83 # 84346 # 84633 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_94 - 96 Sigma70_r4_2 PF08281.7 54 4e-08 25.5 0.2 2 2 1.4e-09 1.3e-07 23.8 0.0 10 54 21 64 12 64 0.83 # 84346 # 84633 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_10 - 209 YhjQ PF06564.7 244 2.2e-05 16.7 0.3 1 2 1.8e-06 0.00017 13.8 0.3 4 38 3 37 1 50 0.89 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_10 - 209 YhjQ PF06564.7 244 2.2e-05 16.7 0.3 2 2 0.029 2.8 0.0 0.0 108 144 69 103 44 113 0.78 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_82 - 518 AAA_23 PF13476.1 202 0.00013 15.2 0.2 1 1 9.7e-06 0.00046 13.4 0.0 20 38 226 244 208 249 0.84 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_70 - 383 AAA_23 PF13476.1 202 0.00019 14.6 0.0 1 1 6.8e-06 0.00032 13.9 0.0 19 40 157 178 142 206 0.85 # 62195 # 63343 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_18 - 228 Methyltransf_26 PF13659.1 117 6.5e-12 38.4 0.1 1 2 1.5e-07 1.4e-05 17.9 0.0 57 114 7 71 2 74 0.72 # 15874 # 16557 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_18 - 228 Methyltransf_26 PF13659.1 117 6.5e-12 38.4 0.1 2 2 1e-07 9.6e-06 18.5 0.0 4 44 167 206 164 222 0.82 # 15874 # 16557 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_82 - 518 AAA_30 PF13604.1 196 0.0003 13.2 0.0 1 1 5.8e-06 0.00054 12.4 0.0 4 44 211 251 209 276 0.84 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_31 - 199 TIGR02433 TIGR02433 47 0.00023 13.2 0.1 1 1 7.7e-06 0.00073 11.6 0.0 30 45 8 23 7 25 0.91 # 24357 # 24953 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_94 - 96 GerE PF00196.14 58 1.3e-06 20.5 0.0 1 1 1.9e-08 1.8e-06 20.1 0.0 3 49 21 67 19 72 0.89 # 84346 # 84633 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_43 - 764 TraG-D_C PF12696.2 128 1.2e-06 21.3 0.2 1 1 2.8e-08 2.7e-06 20.1 0.2 1 88 437 524 437 554 0.82 # 34616 # 36907 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_10 - 209 MipZ PF09140.6 261 1.7e-21 69.2 0.5 1 2 1.2e-12 1.1e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_10 - 209 MipZ PF09140.6 261 1.7e-21 69.2 0.5 2 2 1.6e-12 1.5e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_18 - 228 UPF0020 PF01170.13 180 1.1e-05 17.9 0.0 1 2 0.00026 0.024 7.0 0.0 103 123 17 37 4 88 0.71 # 15874 # 16557 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_18 - 228 UPF0020 PF01170.13 180 1.1e-05 17.9 0.0 2 2 6.3e-05 0.0059 9.0 0.0 28 54 163 189 158 220 0.67 # 15874 # 16557 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_4 - 421 DDE_Tnp_1 PF01609.16 213 7.5e-35 113.2 0.2 1 1 1.7e-36 1.6e-34 112.1 0.0 6 213 128 362 123 362 0.96 # 4272 # 5534 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_88 - 198 Trp_repressor PF01371.14 88 0.00026 13.7 0.0 1 1 4.1e-06 0.00038 13.2 0.0 1 40 103 142 103 151 0.95 # 80241 # 80834 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.365 1_82 - 518 AAA PF00004.24 132 0.00024 14.2 0.0 1 3 0.045 4.2 0.4 0.0 38 57 81 100 26 114 0.78 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_82 - 518 AAA PF00004.24 132 0.00024 14.2 0.0 2 3 0.00033 0.031 7.3 0.0 1 21 228 248 228 278 0.83 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_82 - 518 AAA PF00004.24 132 0.00024 14.2 0.0 3 3 0.017 1.6 1.8 0.0 9 66 442 508 436 515 0.64 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_28 - 653 KorB PF08535.5 93 0.00032 13.7 0.0 1 1 1.3e-05 0.0012 11.9 0.0 2 43 152 193 151 202 0.93 # 21199 # 23157 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.583 1_10 - 209 TIGR00064 TIGR00064 279 0.00021 13.0 0.5 1 2 0.00073 0.069 4.8 0.1 89 116 11 38 1 45 0.88 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_10 - 209 TIGR00064 TIGR00064 279 0.00021 13.0 0.5 2 2 0.00024 0.023 6.4 0.0 153 175 68 90 60 99 0.82 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_18 - 228 N6_N4_Mtase PF01555.13 231 4.4e-37 120.6 0.0 1 1 3.6e-37 3.4e-35 114.4 0.0 1 228 21 200 21 203 0.91 # 15874 # 16557 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_16 - 327 Hydantoinase_A PF01968.13 290 2e-07 23.2 0.9 1 2 8.4e-07 7.9e-05 14.6 0.1 72 96 164 188 153 197 0.82 # 14078 # 15058 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_16 - 327 Hydantoinase_A PF01968.13 290 2e-07 23.2 0.9 2 2 0.00022 0.021 6.7 0.0 211 265 249 303 200 323 0.70 # 14078 # 15058 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_82 - 518 AAA_16 PF13191.1 185 9.3e-05 15.3 0.0 1 1 6.4e-06 0.0003 13.6 0.0 8 51 213 252 212 301 0.78 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_70 - 383 AAA_16 PF13191.1 185 0.00067 12.5 0.0 1 1 3e-05 0.0014 11.4 0.0 27 52 160 188 148 282 0.81 # 62195 # 63343 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_70 - 383 AAA_22 PF13401.1 131 1.3e-05 18.2 0.0 1 1 6.4e-07 3e-05 17.0 0.0 4 26 157 179 152 233 0.76 # 62195 # 63343 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_82 - 518 AAA_22 PF13401.1 131 0.00025 14.0 0.0 1 1 1.3e-05 0.0006 12.8 0.0 6 28 227 249 222 330 0.77 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_39 - 283 Methyltransf_27 PF13708.1 194 1.1e-67 220.2 0.0 1 1 1.6e-69 1.5e-67 219.7 0.0 2 194 85 278 84 278 0.96 # 30034 # 30882 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 1_70 - 383 AAA_29 PF13555.1 62 2.6e-05 16.6 0.0 1 1 1.6e-06 7.6e-05 15.1 0.0 26 43 160 177 151 189 0.85 # 62195 # 63343 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_82 - 518 AAA_29 PF13555.1 62 2.6e-05 16.5 0.0 1 1 1.1e-06 5.4e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_10 - 209 SRP54 PF00448.17 196 2.3e-07 23.2 0.1 1 1 1.5e-08 1.4e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_38 - 84 HTH_3 PF01381.17 55 2.7e-05 16.9 0.0 1 2 1e-06 9.6e-05 15.1 0.0 1 34 6 39 6 45 0.90 # 29203 # 29454 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_38 - 84 HTH_3 PF01381.17 55 2.7e-05 16.9 0.0 2 2 0.083 7.8 -0.7 0.0 39 52 67 80 65 83 0.66 # 29203 # 29454 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_89 - 99 YMF19 PF02326.10 86 0.00034 14.0 1.1 1 1 3.6e-06 0.00034 14.0 1.1 13 68 43 95 32 98 0.82 # 80831 # 81127 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_4 - 421 DDE_Tnp_1_4 PF13701.1 449 3e-27 87.6 3.5 1 2 0.0052 0.49 1.2 0.0 11 42 5 36 3 62 0.72 # 4272 # 5534 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_4 - 421 DDE_Tnp_1_4 PF13701.1 449 3e-27 87.6 3.5 2 2 1.5e-28 1.4e-26 85.4 2.2 137 438 122 418 41 420 0.82 # 4272 # 5534 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_94 - 96 HTH_23 PF13384.1 50 3e-05 16.5 0.0 1 1 1.5e-06 4.7e-05 15.9 0.0 12 41 31 60 24 73 0.76 # 84346 # 84633 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_38 - 84 HTH_23 PF13384.1 50 3.4e-05 16.3 0.3 1 2 1.1e-05 0.00033 13.2 0.1 17 33 14 30 6 38 0.86 # 29203 # 29454 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_38 - 84 HTH_23 PF13384.1 50 3.4e-05 16.3 0.3 2 2 0.072 2.3 1.0 0.0 5 22 63 82 59 83 0.75 # 29203 # 29454 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_28 - 653 HTH_23 PF13384.1 50 7.1e-05 15.3 0.2 1 1 3e-05 0.00094 11.7 0.0 13 40 149 176 143 180 0.91 # 21199 # 23157 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.583 1_89 - 99 zf-DHHC PF01529.15 174 0.0028 9.9 3.1 1 1 3.3e-05 0.0031 9.7 3.1 95 155 4 60 1 87 0.71 # 80831 # 81127 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_10 - 209 Fer4_NifH PF00142.13 273 7e-05 14.9 0.2 1 1 2.3e-06 0.00022 13.3 0.0 8 38 9 39 2 46 0.89 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_38 - 84 HTH_19 PF12844.2 64 7.4e-05 15.6 0.0 1 1 1.2e-06 0.00011 15.1 0.0 7 53 9 56 5 67 0.87 # 29203 # 29454 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_38 - 84 DUF1870 PF08965.5 118 0.00028 13.4 1.2 1 1 3.7e-06 0.00035 13.1 1.2 1 75 1 78 1 81 0.69 # 29203 # 29454 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_94 - 96 HTH_29 PF13551.1 112 0.00014 14.9 0.0 1 1 2.1e-06 0.0002 14.3 0.0 8 36 33 60 27 76 0.79 # 84346 # 84633 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_82 - 518 G-alpha PF00503.15 389 0.0006 11.3 0.0 1 2 0.054 5.1 -1.6 0.0 234 272 70 113 29 117 0.80 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_82 - 518 G-alpha PF00503.15 389 0.0006 11.3 0.0 2 2 1.9e-05 0.0018 9.8 0.0 58 87 225 254 214 322 0.84 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_37 - 69 UBA PF00627.26 37 0.00011 14.9 0.3 1 2 0.021 1.9 1.4 0.0 6 16 4 14 1 17 0.84 # 28966 # 29172 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.512 1_37 - 69 UBA PF00627.26 37 0.00011 14.9 0.3 2 2 1.3e-05 0.0013 11.5 0.0 5 22 35 52 32 55 0.88 # 28966 # 29172 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.512 1_65 - 231 OB_NTP_bind PF07717.11 114 0.00051 12.7 0.0 1 1 7.8e-06 0.00073 12.2 0.0 24 83 28 97 16 158 0.79 # 56431 # 57123 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_73 - 195 DNA_pol3_delta PF06144.8 172 1.9e-06 20.3 0.0 1 1 3e-08 2.8e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 65007 # 65591 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 1_43 - 764 TrwB_AAD_bind PF10412.4 386 3.8e-07 21.8 0.3 1 2 9.3e-05 0.0088 7.4 0.0 11 32 132 153 126 157 0.84 # 34616 # 36907 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_43 - 764 TrwB_AAD_bind PF10412.4 386 3.8e-07 21.8 0.3 2 2 5.3e-06 0.0005 11.5 0.1 247 332 440 525 427 555 0.88 # 34616 # 36907 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_10 - 209 TIGR01968 TIGR01968 261 1.6e-11 36.5 0.8 1 2 6.4e-11 6e-09 28.1 0.5 3 39 2 38 1 42 0.97 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_10 - 209 TIGR01968 TIGR01968 261 1.6e-11 36.5 0.8 2 2 0.00018 0.017 6.9 0.0 100 135 65 100 60 149 0.83 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_70 - 383 AAA_18 PF13238.1 129 0.00024 14.3 0.0 1 1 9.9e-06 0.00046 13.3 0.0 2 19 161 182 161 232 0.72 # 62195 # 63343 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_82 - 518 AAA_18 PF13238.1 129 0.00036 13.7 0.0 1 1 2.1e-05 0.001 12.2 0.0 1 18 228 245 228 316 0.86 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_16 - 327 MutL PF13941.1 457 0.00023 12.3 0.0 1 1 3.7e-06 0.00035 11.8 0.0 231 280 151 201 130 282 0.72 # 14078 # 15058 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_11 - 424 IMS_HHH PF11798.3 32 9.9e-09 27.8 0.2 1 1 3.1e-10 2.9e-08 26.3 0.2 6 32 175 201 170 201 0.92 # 10037 # 11308 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_18 - 228 Methyltransf_15 PF09445.5 164 0.00073 11.9 0.0 1 2 0.042 4 -0.2 0.0 53 79 4 29 2 33 0.90 # 15874 # 16557 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_18 - 228 Methyltransf_15 PF09445.5 164 0.00073 11.9 0.0 2 2 4.3e-05 0.0041 9.5 0.0 3 31 166 194 164 208 0.86 # 15874 # 16557 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_62 - 235 DUF3810 PF12725.2 318 0.00096 10.9 1.1 1 1 1.6e-05 0.0015 10.3 1.1 90 174 106 189 82 194 0.87 # 53441 # 54145 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.508 1_70 - 383 DUF87 PF01935.12 229 0.00087 11.9 0.0 1 1 1.7e-05 0.0016 11.1 0.0 28 56 162 191 161 192 0.83 # 62195 # 63343 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_94 - 96 HTH_28 PF13518.1 52 0.00014 14.7 0.0 1 1 4.3e-06 0.00041 13.2 0.0 9 38 33 62 26 75 0.86 # 84346 # 84633 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_70 - 383 Miro PF08477.8 119 0.001 12.4 0.0 1 1 4.3e-05 0.004 10.5 0.0 3 25 161 183 161 208 0.77 # 62195 # 63343 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_38 - 84 HTH_31 PF13560.1 64 6e-07 22.5 2.0 1 2 1e-08 9.4e-07 21.9 1.2 3 43 3 43 2 57 0.86 # 29203 # 29454 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_38 - 84 HTH_31 PF13560.1 64 6e-07 22.5 2.0 2 2 0.1 9.4 -0.6 0.0 17 34 65 72 44 82 0.58 # 29203 # 29454 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_82 - 518 T2SE PF00437.15 272 2.6e-41 134.1 0.0 1 1 9.6e-43 4.5e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_70 - 383 T2SE PF00437.15 272 1e-35 115.8 0.0 1 1 3.2e-37 1.5e-35 115.2 0.0 120 269 149 306 127 309 0.88 # 62195 # 63343 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_16 - 327 StbA PF06406.6 318 2.1e-150 492.8 0.0 1 1 2.5e-152 2.4e-150 492.6 0.0 1 318 1 324 1 324 0.98 # 14078 # 15058 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_10 - 209 AAA_17 PF13207.1 121 1.4e-05 18.7 0.0 1 1 1.2e-06 3.9e-05 17.3 0.0 9 77 11 84 9 205 0.75 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_70 - 383 AAA_17 PF13207.1 121 1.6e-05 18.6 0.1 1 1 6.1e-06 0.00019 15.1 0.0 3 51 161 212 161 252 0.79 # 62195 # 63343 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_82 - 518 AAA_17 PF13207.1 121 2.2e-05 18.1 0.3 1 1 3.1e-06 9.6e-05 16.0 0.0 1 24 227 255 227 347 0.72 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_10 - 209 AAA_25 PF13481.1 194 0.00011 14.4 0.1 1 1 9.3e-06 0.00029 13.1 0.0 42 87 10 44 3 90 0.78 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_70 - 383 AAA_25 PF13481.1 194 0.00015 14.0 0.0 1 1 8.8e-06 0.00027 13.2 0.0 24 55 148 179 124 201 0.82 # 62195 # 63343 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_82 - 518 AAA_25 PF13481.1 194 0.00029 13.1 0.0 1 2 0.00013 0.0041 9.3 0.0 25 65 217 260 200 270 0.72 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_82 - 518 AAA_25 PF13481.1 194 0.00029 13.1 0.0 2 2 0.058 1.8 0.7 0.0 153 190 297 337 292 340 0.74 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_82 - 518 AAA_14 PF13173.1 128 0.00085 12.1 0.0 1 1 3.7e-05 0.0035 10.1 0.0 5 30 228 254 225 286 0.80 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_16 - 327 Hydant_A_N PF05378.8 176 0.0025 10.1 4.1 1 2 0.013 1.2 1.4 0.5 94 126 114 146 2 155 0.65 # 14078 # 15058 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_16 - 327 Hydant_A_N PF05378.8 176 0.0025 10.1 4.1 2 2 6.3e-05 0.0059 8.9 0.2 2 48 172 216 171 227 0.81 # 14078 # 15058 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_10 - 209 VirC1 PF07015.6 231 3.2e-09 29.0 0.0 1 1 7.1e-11 6.7e-09 27.9 0.0 3 172 2 164 1 206 0.74 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_94 - 96 HTH_Tnp_ISL3 PF13542.1 52 5.7e-05 15.1 0.0 1 1 9.7e-07 9.1e-05 14.5 0.0 29 50 38 59 34 60 0.89 # 84346 # 84633 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_70 - 383 ATP_bind_1 PF03029.12 238 1.8e-05 17.2 0.0 1 1 3e-07 2.8e-05 16.5 0.0 1 30 162 191 162 198 0.86 # 62195 # 63343 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_82 - 518 DAP3 PF10236.4 309 0.0006 11.6 0.0 1 1 1.2e-05 0.0011 10.7 0.0 21 42 223 244 215 253 0.86 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_57 - 1015 AAA_10 PF12846.2 304 1e-30 100.0 0.0 1 1 1.3e-31 2.4e-30 98.7 0.0 8 302 502 897 498 898 0.88 # 48289 # 51333 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.508 1_43 - 764 AAA_10 PF12846.2 304 2.2e-05 16.8 1.0 1 1 3.6e-06 6.8e-05 15.2 0.9 2 287 137 501 136 514 0.62 # 34616 # 36907 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_10 - 209 AAA_10 PF12846.2 304 0.00015 14.1 0.0 1 1 1.3e-05 0.00024 13.4 0.0 11 39 11 39 3 66 0.90 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_82 - 518 AAA_10 PF12846.2 304 0.00022 13.5 0.0 1 1 2.1e-05 0.00039 12.7 0.0 4 30 228 256 226 321 0.81 # 73716 # 75269 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_70 - 383 AAA_10 PF12846.2 304 0.00031 13.0 0.0 1 1 3.3e-05 0.00062 12.0 0.0 2 21 158 177 157 195 0.86 # 62195 # 63343 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_18 - 228 Methyltransf_11 PF08241.7 95 0.00058 13.2 0.0 1 2 0.0024 0.23 4.9 0.0 78 93 53 68 48 70 0.84 # 15874 # 16557 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_18 - 228 Methyltransf_11 PF08241.7 95 0.00058 13.2 0.0 2 2 0.0014 0.13 5.7 0.0 5 54 172 220 168 226 0.82 # 15874 # 16557 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_10 - 209 ArsA_ATPase PF02374.10 305 4.1e-08 25.4 0.9 1 3 1.2e-09 1.1e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_10 - 209 ArsA_ATPase PF02374.10 305 4.1e-08 25.4 0.9 2 3 0.053 5 -1.2 0.0 121 135 69 85 47 86 0.75 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_10 - 209 ArsA_ATPase PF02374.10 305 4.1e-08 25.4 0.9 3 3 0.075 7.1 -1.7 0.0 205 234 132 161 118 202 0.65 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_10 - 209 AAA_31 PF13614.1 157 4e-06 19.6 0.0 1 2 2.5e-07 2.4e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_10 - 209 AAA_31 PF13614.1 157 4e-06 19.6 0.0 2 2 0.055 5.1 -0.2 0.0 109 127 68 86 62 113 0.68 # 9223 # 9849 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_37 - 69 Yae1_N PF09811.4 39 5.1e-07 22.0 3.5 1 1 9e-09 8.5e-07 21.3 3.5 11 30 9 28 8 30 0.79 # 28966 # 29172 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.512 1_15 - 112 DHDPS PF00701.17 289 0.00074 10.9 0.0 1 1 9.2e-06 0.00087 10.7 0.0 21 77 13 67 2 76 0.86 # 13405 # 13740 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_26 - 176 SSB PF00436.20 104 6.1e-41 131.4 0.4 1 1 8.6e-43 8.1e-41 131.0 0.4 1 101 6 109 6 112 0.96 # 20322 # 20849 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/a153f22c-a1c5-4109-9485-4ff4566ee859 # Target file: checkm_output/bins/pm1103/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1103/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a153f22c-a1c5-4109-9485-4ff4566ee859 checkm_output/bins/pm1103/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:34:49 2017 # [ok]