# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_8 - 92 Zn_Tnp_IS1 PF03811.8 36 1.5e-23 74.5 3.6 1 1 4e-25 2.9e-23 73.6 3.6 1 36 1 36 1 36 0.99 # 7735 # 8010 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 3_7 - 95 HTH_22 PF13309.1 64 8e-07 21.3 0.1 1 1 8e-08 2.9e-06 19.5 0.0 19 64 4 44 1 44 0.88 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 4_2 - 187 HTH_22 PF13309.1 64 2.1e-05 16.8 0.5 1 2 0.088 3.2 0.1 0.0 23 38 70 85 57 85 0.79 # 1345 # 1905 # -1 # ID=4_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 4_2 - 187 HTH_22 PF13309.1 64 2.1e-05 16.8 0.5 2 2 6e-06 0.00022 13.5 0.0 47 64 166 183 164 183 0.92 # 1345 # 1905 # -1 # ID=4_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 4_7 - 211 TIGR01173 TIGR01173 452 3.3e-10 31.5 0.1 1 1 6.4e-12 4.8e-10 30.9 0.1 390 446 109 165 100 170 0.87 # 5592 # 6224 # 1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.494 2_5 - 424 Cdd1 PF11731.3 93 0.00024 13.5 0.1 1 1 1.1e-05 0.00083 11.8 0.0 10 47 177 214 143 227 0.86 # 3988 # 5259 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_11 - 325 Sigma54_activat PF00158.21 168 1.8e-64 208.7 0.0 1 1 3.6e-66 2.7e-64 208.2 0.0 2 163 9 170 8 175 0.98 # 9548 # 10522 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 8_3 - 57 HTH_Tnp_Tc3_2 PF01498.13 72 0.00016 14.2 0.0 1 1 4.9e-06 0.00018 14.1 0.0 14 39 26 51 11 55 0.89 # 1231 # 1401 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 3_1 - 57 HTH_Tnp_Tc3_2 PF01498.13 72 0.00017 14.1 0.0 1 1 4.7e-06 0.00017 14.1 0.0 14 39 26 51 11 55 0.88 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 8_3 - 57 HTH_38 PF13936.1 44 0.00018 13.5 0.0 1 1 3.1e-05 0.00058 11.9 0.0 30 43 40 53 38 54 0.90 # 1231 # 1401 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 3_1 - 57 HTH_38 PF13936.1 44 0.00019 13.5 0.0 1 1 3.1e-05 0.00058 11.9 0.0 30 43 40 53 38 54 0.90 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_12 - 129 HTH_38 PF13936.1 44 0.00022 13.3 0.0 1 1 1.6e-05 0.0003 12.9 0.0 5 31 12 41 8 45 0.83 # 10669 # 11055 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_7 - 95 HTH_38 PF13936.1 44 0.00035 12.6 0.7 1 1 4.4e-05 0.00081 11.5 0.0 17 42 19 44 3 45 0.77 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 303 TIGR01830 TIGR01830 239 4.4e-48 156.2 0.0 1 1 7e-50 5.2e-48 155.9 0.0 1 237 60 298 60 300 0.92 # 7817 # 8725 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 5_5 - 102 HTH_34 PF13601.1 80 3.5e-10 32.4 0.1 1 1 6.6e-12 4.9e-10 31.9 0.1 25 79 39 93 30 94 0.92 # 4405 # 4710 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 5_5 - 102 MarR PF01047.17 59 3.3e-05 16.1 0.0 1 1 6.2e-07 4.6e-05 15.6 0.0 29 58 40 69 13 70 0.92 # 4405 # 4710 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_11 - 325 HTH_8 PF02954.14 42 7.4e-10 30.8 0.4 1 1 2e-11 1.5e-09 29.8 0.4 6 41 286 321 282 322 0.92 # 9548 # 10522 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 6_2 - 226 TetR_N PF00440.18 47 2.6e-20 64.4 0.1 1 2 2.1e-20 5.1e-19 60.2 0.0 2 47 19 64 18 64 0.97 # 425 # 1102 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 6_2 - 226 TetR_N PF00440.18 47 2.6e-20 64.4 0.1 2 2 0.038 0.93 1.8 0.1 1 16 179 194 179 196 0.91 # 425 # 1102 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 5_3 - 195 TetR_N PF00440.18 47 2.4e-08 26.0 0.0 1 1 1.9e-09 4.6e-08 25.1 0.0 2 46 13 57 12 58 0.95 # 2337 # 2921 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.609 3_7 - 95 TetR_N PF00440.18 47 9.7e-06 17.7 0.3 1 1 9.7e-07 2.4e-05 16.5 0.0 4 35 13 41 12 42 0.93 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 2_3 - 402 CbiA PF01656.18 195 1.1e-18 59.8 0.0 1 1 2.8e-20 2.1e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 1727 # 2932 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 3_7 - 95 Sigma70_r4_2 PF08281.7 54 8.7e-05 14.5 1.8 1 2 4.5e-06 0.00016 13.6 0.1 22 48 18 44 11 47 0.83 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_7 - 95 Sigma70_r4_2 PF08281.7 54 8.7e-05 14.5 1.8 2 2 0.073 2.7 0.1 0.2 2 15 63 76 62 82 0.78 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 2_4 - 325 Sigma70_r4_2 PF08281.7 54 0.0003 12.7 0.1 1 1 2.7e-05 0.001 11.1 0.1 23 50 157 184 152 185 0.88 # 2932 # 3906 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 5_5 - 102 PadR PF03551.9 75 4.3e-23 73.4 0.5 1 1 8e-25 5.9e-23 73.0 0.5 1 74 15 84 15 85 0.97 # 4405 # 4710 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_1 - 288 Rep_3 PF01051.16 222 8.8e-49 158.5 0.0 1 1 1.5e-50 1.1e-48 158.2 0.0 3 213 64 277 62 282 0.95 # 3 # 866 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 3_6 - 196 rve PF00665.21 120 7e-16 50.9 0.1 1 1 4.4e-17 1.1e-15 50.3 0.1 3 77 106 178 104 191 0.93 # 2942 # 3529 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.529 5_4 - 255 rve PF00665.21 120 8e-14 44.3 0.0 1 2 0.061 1.5 1.5 0.0 83 102 30 49 7 51 0.90 # 3414 # 4178 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 5_4 - 255 rve PF00665.21 120 8e-14 44.3 0.0 2 2 5e-14 1.2e-12 40.5 0.0 8 117 73 179 69 182 0.90 # 3414 # 4178 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 10_1 - 220 rve PF00665.21 120 1.2e-13 43.7 0.1 1 2 0.054 1.3 1.6 0.0 79 102 13 34 4 39 0.84 # 2 # 661 # 1 # ID=10_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 10_1 - 220 rve PF00665.21 120 1.2e-13 43.7 0.1 2 2 8e-14 2e-12 39.8 0.0 9 119 60 167 55 168 0.89 # 2 # 661 # 1 # ID=10_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 1_1 - 514 zf-ribbon_3 PF13248.1 26 0.042 5.7 9.1 1 2 9.1e-05 0.0067 8.2 0.9 18 24 95 101 93 108 0.74 # 508 # 2049 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_1 - 514 zf-ribbon_3 PF13248.1 26 0.042 5.7 9.1 2 2 0.0085 0.63 1.9 0.1 18 23 449 454 446 457 0.83 # 508 # 2049 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 3_7 - 95 Terminase_5 PF06056.7 58 1.5e-05 17.0 0.0 1 1 3.4e-07 2.5e-05 16.3 0.0 12 39 21 48 12 63 0.87 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 2_4 - 325 CPSase_L_D3 PF02787.14 123 3.7e-05 16.0 0.7 1 2 0.018 1.3 1.3 0.0 75 116 16 55 6 57 0.82 # 2932 # 3906 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 2_4 - 325 CPSase_L_D3 PF02787.14 123 3.7e-05 16.0 0.7 2 2 7.2e-06 0.00053 12.3 0.2 48 97 133 185 124 190 0.84 # 2932 # 3906 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 3_7 - 95 HTH_Tnp_1 PF01527.15 76 1.9e-19 61.9 0.2 1 1 1e-20 2.5e-19 61.5 0.2 4 76 3 74 1 74 0.94 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 8_3 - 57 HTH_Tnp_1 PF01527.15 76 1.7e-05 17.2 0.8 1 1 1.4e-06 3.4e-05 16.3 0.8 4 47 6 54 4 57 0.81 # 1231 # 1401 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 3_1 - 57 HTH_Tnp_1 PF01527.15 76 2.1e-05 17.0 0.5 1 1 1.7e-06 4.2e-05 16.0 0.5 4 47 6 54 4 57 0.81 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 10_1 - 220 DDE_3 PF13358.1 146 0.00029 13.1 0.0 1 1 1e-05 0.00077 11.7 0.0 32 90 67 126 44 138 0.88 # 2 # 661 # 1 # ID=10_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 2_3 - 402 MipZ PF09140.6 261 1.4e-06 20.0 0.0 1 2 0.0027 0.2 3.1 0.0 3 50 111 163 109 193 0.73 # 1727 # 2932 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 2_3 - 402 MipZ PF09140.6 261 1.4e-06 20.0 0.0 2 2 8.7e-07 6.4e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 1727 # 2932 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 2_10 - 308 DDE_Tnp_1 PF01609.16 213 3e-24 78.2 0.6 1 1 5.3e-26 4e-24 77.8 0.6 4 205 115 286 112 293 0.85 # 9606 # 10529 # 1 # ID=2_10;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 2_4 - 325 Trp_repressor PF01371.14 88 0.00062 12.2 1.9 1 1 3.9e-05 0.0029 10.1 0.1 15 69 127 180 119 187 0.81 # 2932 # 3906 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 3_7 - 95 Sigma70_r4 PF04545.11 50 0.00012 13.9 0.7 1 2 2.2e-05 0.0016 10.2 0.2 13 33 15 35 11 37 0.83 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_7 - 95 Sigma70_r4 PF04545.11 50 0.00012 13.9 0.7 2 2 0.035 2.6 -0.0 0.0 6 14 75 83 75 89 0.83 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 5_5 - 102 Replic_Relax PF13814.1 191 2.6e-05 16.6 0.1 1 1 3.9e-07 2.9e-05 16.5 0.1 16 77 31 90 17 96 0.85 # 4405 # 4710 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_11 - 325 AAA PF00004.24 132 1.2e-05 18.1 0.0 1 1 3.4e-07 2.5e-05 17.0 0.0 1 125 32 167 32 171 0.73 # 9548 # 10522 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 2_4 - 325 HTH_37 PF13744.1 80 5.6e-05 15.4 2.7 1 2 0.011 0.84 2.1 0.0 27 56 9 38 6 43 0.82 # 2932 # 3906 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 2_4 - 325 HTH_37 PF13744.1 80 5.6e-05 15.4 2.7 2 2 3e-05 0.0022 10.3 0.2 27 53 156 182 134 185 0.87 # 2932 # 3906 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 6_3 - 400 TIGR01394 TIGR01394 594 0.0011 9.3 0.0 1 1 2.2e-05 0.0016 8.8 0.0 408 486 267 343 261 354 0.84 # 1181 # 2380 # 1 # ID=6_3;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.637 3_7 - 95 MerR_1 PF13411.1 69 6.7e-06 18.4 0.0 1 1 2e-07 1.5e-05 17.2 0.0 1 22 23 44 23 51 0.94 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_11 - 325 AAA_16 PF13191.1 185 0.00019 13.9 0.1 1 1 7.2e-06 0.00053 12.5 0.0 18 64 21 69 10 126 0.78 # 9548 # 10522 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 4_2 - 187 NUMOD1 PF07453.8 37 0.00058 12.2 0.0 1 1 1.5e-05 0.0011 11.4 0.0 20 37 165 182 164 182 0.92 # 1345 # 1905 # -1 # ID=4_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 5_5 - 102 DUF3116 PF11313.3 85 0.0003 12.9 0.1 1 1 5.7e-06 0.00043 12.4 0.1 49 83 50 88 39 90 0.75 # 4405 # 4710 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_18 - 292 HTH_1 PF00126.22 60 1.7e-23 74.7 2.1 1 1 4.8e-25 3.5e-23 73.7 2.1 1 60 8 67 8 67 0.97 # 14839 # 15714 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 3_7 - 95 LZ_Tnp_IS481 PF13011.1 85 1.8e-05 17.5 0.1 1 1 3.3e-07 2.5e-05 17.1 0.1 17 50 14 47 2 87 0.84 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 303 adh_short_C2 PF13561.1 241 1.9e-30 98.8 0.0 1 1 3e-32 2.2e-30 98.6 0.0 5 239 66 298 63 300 0.95 # 7817 # 8725 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 3_7 - 95 HTH_Tnp_IS630 PF01710.11 120 4.4e-07 22.1 0.1 1 1 6.8e-09 5e-07 21.9 0.1 13 82 17 90 6 94 0.75 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 2_10 - 308 DDE_Tnp_1_3 PF13612.1 155 0.00051 12.3 0.0 1 1 2e-05 0.0015 10.8 0.0 47 111 148 216 145 223 0.83 # 9606 # 10529 # 1 # ID=2_10;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_9 - 303 adh_short PF00106.20 167 1.2e-34 112.1 0.1 1 1 2.1e-36 1.5e-34 111.8 0.1 3 166 60 225 58 226 0.97 # 7817 # 8725 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 8_3 - 57 HTH_32 PF13565.1 77 4.2e-08 26.4 0.0 1 1 2.9e-09 5.3e-08 26.1 0.0 26 76 5 50 2 51 0.86 # 1231 # 1401 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 3_1 - 57 HTH_32 PF13565.1 77 1.2e-07 25.0 0.0 1 1 8e-09 1.5e-07 24.7 0.0 26 76 5 50 2 51 0.84 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 10_1 - 220 HTH_32 PF13565.1 77 1.1e-05 18.7 0.7 1 1 1.9e-06 3.5e-05 17.1 0.1 46 76 9 35 1 36 0.81 # 2 # 661 # 1 # ID=10_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 5_4 - 255 HTH_32 PF13565.1 77 0.00014 15.1 0.2 1 1 2.7e-05 0.00049 13.4 0.2 37 76 15 50 6 51 0.83 # 3414 # 4178 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_1 - 514 A2L_zn_ribbon PF08792.5 33 0.0049 8.9 4.7 1 2 0.00018 0.014 7.5 0.6 5 29 76 101 74 102 0.90 # 508 # 2049 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_1 - 514 A2L_zn_ribbon PF08792.5 33 0.0049 8.9 4.7 2 2 0.0078 0.58 2.3 0.3 20 28 446 454 444 457 0.62 # 508 # 2049 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 3_7 - 95 HTH_3 PF01381.17 55 2.7e-06 19.7 0.0 1 2 1.8e-07 1.4e-05 17.5 0.0 4 33 15 46 13 51 0.86 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_7 - 95 HTH_3 PF01381.17 55 2.7e-06 19.7 0.0 2 2 0.073 5.4 -0.5 0.0 39 52 80 93 79 94 0.80 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 303 Epimerase PF01370.16 236 1e-06 20.8 0.0 1 1 1.9e-08 1.4e-06 20.4 0.0 1 157 60 224 60 238 0.80 # 7817 # 8725 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 3_7 - 95 HTH_23 PF13384.1 50 6.9e-09 27.7 3.6 1 1 1.1e-09 1e-08 27.2 0.2 10 40 14 45 9 59 0.83 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_1 - 57 HTH_23 PF13384.1 50 2.7e-07 22.7 0.7 1 2 0.01 0.097 5.0 0.1 7 27 11 35 7 36 0.72 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_1 - 57 HTH_23 PF13384.1 50 2.7e-07 22.7 0.7 2 2 2.4e-06 2.2e-05 16.6 0.1 28 42 41 55 40 57 0.89 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 8_3 - 57 HTH_23 PF13384.1 50 6.8e-07 21.4 1.0 1 2 0.023 0.21 3.9 0.1 10 27 17 35 10 36 0.70 # 1231 # 1401 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 8_3 - 57 HTH_23 PF13384.1 50 6.8e-07 21.4 1.0 2 2 2.4e-06 2.2e-05 16.6 0.1 28 42 41 55 40 57 0.89 # 1231 # 1401 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 4_2 - 187 HTH_23 PF13384.1 50 7.9e-06 18.0 0.6 1 1 2e-06 1.9e-05 16.8 0.0 11 39 154 183 144 184 0.81 # 1345 # 1905 # -1 # ID=4_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 10_1 - 220 HTH_23 PF13384.1 50 8.9e-06 17.8 0.6 1 1 1.4e-05 0.00013 14.2 0.1 28 42 26 40 25 48 0.87 # 2 # 661 # 1 # ID=10_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 2_8 - 92 HTH_23 PF13384.1 50 2.8e-05 16.2 0.0 1 1 5.1e-06 4.7e-05 15.5 0.0 7 39 53 85 51 89 0.93 # 7735 # 8010 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 2_4 - 325 HTH_23 PF13384.1 50 0.00014 14.0 0.2 1 1 0.0002 0.0018 10.5 0.0 9 40 152 183 151 188 0.88 # 2932 # 3906 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 6_2 - 226 HTH_23 PF13384.1 50 0.00066 11.9 0.2 1 1 0.00039 0.0036 9.5 0.0 10 35 22 51 14 64 0.75 # 425 # 1102 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 4_2 - 187 HTH_7 PF02796.10 45 2.1e-15 48.8 0.1 1 1 1.3e-16 4.7e-15 47.7 0.1 1 44 141 184 141 185 0.98 # 1345 # 1905 # -1 # ID=4_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 3_7 - 95 HTH_7 PF02796.10 45 3.3e-05 16.3 0.0 1 1 1.8e-06 6.8e-05 15.2 0.0 13 44 14 45 8 46 0.89 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_1 - 514 Ribosomal_S27e PF01667.12 55 6.3e-05 15.0 0.8 1 1 8.6e-07 6.3e-05 15.0 0.8 5 33 72 100 69 105 0.90 # 508 # 2049 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 3_7 - 95 HTH_19 PF12844.2 64 9.7e-06 18.1 0.1 1 1 2.6e-07 1.9e-05 17.2 0.0 9 34 19 44 16 62 0.89 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 303 DUF1776 PF08643.5 299 7.5e-05 14.4 0.0 1 1 1.5e-06 0.00011 13.8 0.0 107 195 152 234 146 239 0.84 # 7817 # 8725 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 2_8 - 92 zinc_ribbon_4 PF13717.1 36 1.2e-05 17.5 2.8 1 1 7.2e-07 2.7e-05 16.4 2.8 3 35 6 39 5 40 0.86 # 7735 # 8010 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_1 - 514 zinc_ribbon_4 PF13717.1 36 0.0042 9.3 4.0 1 2 0.00087 0.032 6.5 0.1 1 12 73 84 73 87 0.82 # 508 # 2049 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_1 - 514 zinc_ribbon_4 PF13717.1 36 0.0042 9.3 4.0 2 2 0.013 0.47 2.8 0.0 5 14 96 105 95 113 0.81 # 508 # 2049 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 2_12 - 129 Ribosomal_S20p PF01649.13 84 0.00021 14.2 0.1 1 1 4.8e-06 0.00036 13.4 0.1 6 59 56 109 53 118 0.75 # 10669 # 11055 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_11 - 325 Mg_chelatase PF01078.16 207 6.9e-09 27.6 0.0 1 2 0.00013 0.0093 7.6 0.0 25 45 32 52 27 60 0.89 # 9548 # 10522 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_11 - 325 Mg_chelatase PF01078.16 207 6.9e-09 27.6 0.0 2 2 1e-07 7.5e-06 17.7 0.0 92 157 86 149 79 158 0.89 # 9548 # 10522 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 5_5 - 102 FeoC PF09012.5 69 0.00069 11.8 0.0 1 1 1.4e-05 0.001 11.3 0.0 24 48 38 62 30 72 0.81 # 4405 # 4710 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 4_2 - 187 HTH_29 PF13551.1 112 2.4e-05 17.0 3.1 1 2 0.06 4.5 0.0 0.0 19 104 63 85 22 93 0.61 # 1345 # 1905 # -1 # ID=4_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 4_2 - 187 HTH_29 PF13551.1 112 2.4e-05 17.0 3.1 2 2 9e-06 0.00066 12.3 1.6 33 108 122 182 115 183 0.64 # 1345 # 1905 # -1 # ID=4_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 10_1 - 220 DDE_Tnp_IS66 PF03050.9 271 3.1e-12 38.7 0.4 1 1 2.2e-13 4e-12 38.3 0.4 15 132 5 129 1 160 0.87 # 2 # 661 # 1 # ID=10_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 5_4 - 255 DDE_Tnp_IS66 PF03050.9 271 8.3e-10 30.7 0.4 1 1 6.7e-11 1.2e-09 30.2 0.4 11 133 16 144 8 183 0.86 # 3414 # 4178 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 8_3 - 57 DDE_Tnp_IS66 PF03050.9 271 8.6e-07 20.8 0.0 1 1 4.7e-08 8.6e-07 20.8 0.0 4 50 9 55 6 57 0.92 # 1231 # 1401 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 3_1 - 57 DDE_Tnp_IS66 PF03050.9 271 2e-06 19.6 0.0 1 1 1.1e-07 2e-06 19.6 0.0 4 50 9 55 6 57 0.90 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_11 - 325 AAA_5 PF07728.9 139 1.7e-09 30.0 0.0 1 1 3.8e-11 2.8e-09 29.3 0.0 1 123 31 150 31 169 0.81 # 9548 # 10522 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 2_3 - 402 TIGR01968 TIGR01968 261 0.00063 11.3 0.0 1 2 0.0091 0.67 1.3 0.0 4 28 111 135 108 169 0.76 # 1727 # 2932 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 2_3 - 402 TIGR01968 TIGR01968 261 0.00063 11.3 0.0 2 2 0.00016 0.012 7.1 0.0 102 138 235 271 226 288 0.87 # 1727 # 2932 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 2_5 - 424 IMS_HHH PF11798.3 32 1.9e-08 26.6 0.1 1 1 6.4e-10 4.7e-08 25.3 0.1 2 32 170 200 169 200 0.91 # 3988 # 5259 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 4_2 - 187 HTH_psq PF05225.11 45 0.00021 13.3 0.0 1 1 7.4e-06 0.00055 12.0 0.0 20 38 165 183 164 185 0.91 # 1345 # 1905 # -1 # ID=4_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 2_8 - 92 HTH_Tnp_IS1 PF12759.2 46 7.9e-32 101.0 0.2 1 1 1.7e-33 1.3e-31 100.4 0.2 1 45 43 87 43 88 0.99 # 7735 # 8010 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 3_7 - 95 HTH_28 PF13518.1 52 1.5e-08 27.1 0.2 1 1 2.3e-09 2.8e-08 26.2 0.2 1 35 10 45 10 47 0.90 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 4_2 - 187 HTH_28 PF13518.1 52 2.8e-06 19.8 0.1 1 1 2.3e-07 2.8e-06 19.8 0.1 8 34 156 183 149 184 0.83 # 1345 # 1905 # -1 # ID=4_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 3_1 - 57 HTH_28 PF13518.1 52 4.2e-06 19.2 1.9 1 1 1.5e-06 1.8e-05 17.2 1.9 14 36 27 54 10 55 0.69 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 8_3 - 57 HTH_28 PF13518.1 52 5.6e-06 18.9 2.6 1 1 2.2e-06 2.8e-05 16.6 2.6 12 36 25 54 10 55 0.69 # 1231 # 1401 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_8 - 92 HTH_28 PF13518.1 52 3.1e-05 16.5 0.0 1 1 3.7e-06 4.5e-05 15.9 0.0 4 36 55 87 53 91 0.90 # 7735 # 8010 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 10_1 - 220 HTH_28 PF13518.1 52 4e-05 16.1 1.1 1 1 1.4e-05 0.00017 14.1 1.1 22 36 25 39 2 40 0.76 # 2 # 661 # 1 # ID=10_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 5_5 - 102 HTH_12 PF08461.5 66 2e-06 20.0 0.7 1 1 4.3e-08 3.2e-06 19.3 0.7 6 65 15 82 12 83 0.77 # 4405 # 4710 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 6_2 - 226 HTH_Tnp_1_2 PF13022.1 142 0.00058 12.1 0.0 1 1 1.2e-05 0.00086 11.6 0.0 22 77 24 73 5 79 0.76 # 425 # 1102 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 2_4 - 325 HTH_24 PF13412.1 48 8.4e-05 14.5 0.1 1 1 1.1e-06 8.4e-05 14.5 0.1 15 39 158 182 151 184 0.84 # 2932 # 3906 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_11 - 325 Sigma54_activ_2 PF14532.1 138 4.5e-25 80.8 0.0 1 1 2.2e-26 1.6e-24 79.0 0.0 1 138 9 179 9 179 0.90 # 9548 # 10522 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 5_5 - 102 FUR PF01475.14 120 1.5e-05 17.4 0.0 1 1 2.1e-07 1.5e-05 17.4 0.0 29 74 29 77 12 99 0.79 # 4405 # 4710 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_7 - 95 HTH_10 PF04967.7 53 1.7e-06 20.1 0.1 1 2 1.9e-06 7.2e-05 14.9 0.0 21 47 20 46 19 48 0.92 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_7 - 95 HTH_10 PF04967.7 53 1.7e-06 20.1 0.1 2 2 0.01 0.39 2.9 0.0 2 14 75 87 75 89 0.90 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 4_2 - 187 HTH_10 PF04967.7 53 4.6e-05 15.5 0.3 1 1 8.2e-06 0.0003 12.9 0.0 28 45 166 183 164 184 0.93 # 1345 # 1905 # -1 # ID=4_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 3_7 - 95 HTH_31 PF13560.1 64 1.9e-05 17.3 0.2 1 1 4.8e-07 3.5e-05 16.5 0.2 12 53 20 61 11 63 0.90 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_1 - 514 DZR PF12773.2 50 0.0044 9.4 4.8 1 2 0.0017 0.12 4.8 3.4 1 20 77 101 64 109 0.61 # 508 # 2049 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_1 - 514 DZR PF12773.2 50 0.0044 9.4 4.8 2 2 0.0053 0.39 3.1 0.0 13 23 448 458 441 487 0.75 # 508 # 2049 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 5_5 - 102 Penicillinase_R PF03965.11 115 1.9e-05 17.3 0.0 1 1 2.8e-07 2.1e-05 17.1 0.0 22 58 28 67 13 99 0.81 # 4405 # 4710 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_5 - 359 Transposase_20 PF02371.11 87 2.8e-14 45.6 0.1 1 1 7.8e-16 5.8e-14 44.5 0.1 9 86 238 315 232 316 0.93 # 1647 # 2723 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.484 3_7 - 95 HTH_Tnp_ISL3 PF13542.1 52 2.9e-07 22.1 0.0 1 1 6e-09 4.4e-07 21.5 0.0 10 50 4 45 3 47 0.95 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_7 - 95 MerR PF00376.18 38 3.1e-05 16.0 0.0 1 1 8.6e-07 6.3e-05 15.0 0.0 1 21 24 44 24 45 0.91 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 4_2 - 187 CENP-B_N PF04218.8 53 2.1e-05 16.4 0.1 1 1 6.4e-07 4.7e-05 15.3 0.0 18 43 157 182 154 186 0.86 # 1345 # 1905 # -1 # ID=4_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 8_3 - 57 Arg_repressor PF01316.16 70 0.00023 13.2 0.0 1 1 8.8e-06 0.00033 12.7 0.0 23 46 29 52 26 54 0.92 # 1231 # 1401 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 3_1 - 57 Arg_repressor PF01316.16 70 0.00023 13.2 0.0 1 1 8.8e-06 0.00033 12.7 0.0 23 46 29 52 26 54 0.92 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_11 - 325 AAA_2 PF07724.9 171 3.8e-06 19.4 0.0 1 1 1.2e-07 9.1e-06 18.1 0.0 6 131 32 152 30 181 0.85 # 9548 # 10522 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_9 - 303 Eno-Rase_NADH_b PF12242.3 78 4.2e-06 19.0 0.1 1 1 1.1e-07 8.3e-06 18.1 0.1 33 66 52 83 45 93 0.80 # 7817 # 8725 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 2_9 - 98 DDE_Tnp_IS1 PF03400.8 131 1.7e-48 156.5 0.2 1 1 2.6e-50 1.9e-48 156.4 0.2 35 131 1 97 1 97 0.99 # 8139 # 8432 # 1 # ID=2_9;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 2_8 - 92 zinc_ribbon_5 PF13719.1 37 5.3e-06 18.5 2.8 1 1 3.6e-07 1.3e-05 17.2 2.8 3 36 6 40 5 41 0.83 # 7735 # 8010 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_1 - 514 zinc_ribbon_5 PF13719.1 37 0.0033 9.6 3.9 1 2 0.0008 0.029 6.5 0.1 1 12 73 84 73 87 0.82 # 508 # 2049 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_1 - 514 zinc_ribbon_5 PF13719.1 37 0.0033 9.6 3.9 2 2 0.01 0.38 3.0 0.0 5 14 96 105 95 113 0.81 # 508 # 2049 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 5_4 - 255 DDE_Tnp_IS240 PF13610.1 140 7.5e-54 174.0 0.0 1 1 3.9e-55 9.7e-54 173.6 0.0 3 139 73 211 71 212 0.98 # 3414 # 4178 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 10_1 - 220 DDE_Tnp_IS240 PF13610.1 140 1.1e-52 170.3 0.0 1 1 5.9e-54 1.5e-52 169.8 0.0 4 139 60 197 58 198 0.99 # 2 # 661 # 1 # ID=10_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 3_6 - 196 DDE_Tnp_IS240 PF13610.1 140 0.00015 14.3 0.1 1 1 1.1e-05 0.00026 13.4 0.1 2 67 110 177 109 190 0.84 # 2942 # 3529 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.529 3_7 - 95 HTH_26 PF13443.1 63 0.00011 14.9 0.0 1 1 2.8e-06 0.00021 14.0 0.0 6 32 18 44 16 50 0.90 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 3_7 - 95 HTH_17 PF12728.2 51 2.7e-06 20.1 0.1 1 1 8.2e-08 6.1e-06 19.0 0.0 2 23 23 44 22 53 0.93 # 3577 # 3861 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_1 - 514 Zn-ribbon_8 PF09723.5 42 0.0002 13.8 7.4 1 2 0.00023 0.017 7.6 5.0 7 35 76 102 75 106 0.81 # 508 # 2049 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_1 - 514 Zn-ribbon_8 PF09723.5 42 0.0002 13.8 7.4 2 2 0.00078 0.058 5.9 0.0 8 24 450 466 437 470 0.75 # 508 # 2049 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 2_8 - 92 Zn_Tnp_IS1595 PF12760.2 46 7.7e-05 15.0 2.1 1 1 1.9e-06 0.00014 14.2 2.1 21 46 8 38 4 38 0.79 # 7735 # 8010 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 4_2 - 187 HTH_11 PF08279.7 55 4.5e-05 15.6 0.0 1 2 0.052 3.9 -0.2 0.0 33 47 74 88 72 94 0.67 # 1345 # 1905 # -1 # ID=4_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 4_2 - 187 HTH_11 PF08279.7 55 4.5e-05 15.6 0.0 2 2 4.6e-06 0.00034 12.8 0.0 19 37 165 183 162 184 0.91 # 1345 # 1905 # -1 # ID=4_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 2_10 - 308 DDE_Tnp_1_5 PF13737.1 112 2.7e-47 152.1 0.1 1 2 5e-48 3.7e-46 148.4 0.0 1 112 19 130 19 130 0.96 # 9606 # 10529 # 1 # ID=2_10;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 2_10 - 308 DDE_Tnp_1_5 PF13737.1 112 2.7e-47 152.1 0.1 2 2 0.037 2.7 0.7 0.0 42 68 263 291 250 297 0.81 # 9606 # 10529 # 1 # ID=2_10;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_5 - 131 BOF PF04076.8 103 4.4e-34 109.0 0.0 1 1 7.4e-36 5.4e-34 108.7 0.0 4 103 30 130 26 130 0.97 # 5631 # 6023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.468 5_5 - 102 TrmB PF01978.14 68 0.00018 13.7 0.1 1 1 7.3e-06 0.00054 12.2 0.1 34 62 40 73 31 78 0.84 # 4405 # 4710 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 5_1 - 302 LYTB PF02401.13 281 0.00051 11.5 0.0 1 1 2e-05 0.0015 9.9 0.0 236 272 81 117 70 124 0.91 # 197 # 1102 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_18 - 292 HTH_20 PF12840.2 61 0.00013 14.3 0.4 1 2 0.00036 0.013 7.8 0.1 20 57 16 54 4 58 0.79 # 14839 # 15714 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_18 - 292 HTH_20 PF12840.2 61 0.00013 14.3 0.4 2 2 0.0047 0.17 4.2 0.0 20 43 163 190 157 194 0.81 # 14839 # 15714 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 6_2 - 226 HTH_20 PF12840.2 61 0.00018 13.8 0.1 1 1 3.6e-05 0.0013 11.0 0.0 21 46 30 55 18 63 0.85 # 425 # 1102 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_12 - 223 AAA_13 PF13166.1 712 0.002 9.1 20.8 1 2 8.6e-07 6.3e-05 14.0 12.3 333 457 6 132 3 140 0.91 # 10693 # 11361 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.501 1_12 - 223 AAA_13 PF13166.1 712 0.002 9.1 20.8 2 2 0.012 0.88 0.3 1.2 366 397 169 201 149 222 0.35 # 10693 # 11361 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.501 2_3 - 402 AAA_31 PF13614.1 157 7e-05 15.3 0.0 1 1 5.5e-06 0.0004 12.8 0.0 108 147 235 273 230 279 0.86 # 1727 # 2932 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 9_2 - 280 Pterin_bind PF00809.17 210 1.9e-58 189.7 0.0 1 1 3e-60 2.3e-58 189.5 0.0 1 210 7 216 7 216 0.98 # 271 # 1110 # 1 # ID=9_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_9 - 303 KR PF08659.5 181 7.1e-14 44.3 0.0 1 1 1.3e-15 9.7e-14 43.9 0.0 3 174 60 236 59 242 0.81 # 7817 # 8725 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 2_5 - 424 DNA_pol_lambd_f PF10391.4 52 5.3e-05 15.3 0.1 1 1 4.5e-06 0.00033 12.7 0.0 5 29 182 206 178 217 0.87 # 3988 # 5259 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 3_6 - 196 HTH_21 PF13276.1 60 6.4e-15 47.5 1.7 1 1 1.7e-16 1.3e-14 46.5 1.7 3 55 27 78 24 87 0.91 # 2942 # 3529 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.529 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/14a136b6-e7e5-4fe4-b0c4-39f525f3f4f3 # Target file: checkm_output/bins/pm1081/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1081/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/14a136b6-e7e5-4fe4-b0c4-39f525f3f4f3 checkm_output/bins/pm1081/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:34:16 2017 # [ok]