# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 145 HTH_IclR PF09339.5 52 2e-06 15.4 0.0 1 1 1.9e-06 5.8e-06 13.9 0.0 19 49 72 102 57 105 0.83 # 321 # 755 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 145 HrcA_DNA-bdg PF03444.10 79 1.5e-05 12.5 0.0 1 1 7.1e-06 2.1e-05 12.0 0.0 2 66 49 112 48 122 0.83 # 321 # 755 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 145 MarR PF01047.17 59 6.3e-08 20.3 0.1 1 1 4.8e-08 1.4e-07 19.2 0.1 14 47 68 101 49 102 0.83 # 321 # 755 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 145 Rrf2 PF02082.15 83 3.6e-06 15.1 0.0 1 1 1.9e-06 5.8e-06 14.4 0.0 7 56 54 102 50 119 0.77 # 321 # 755 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 145 HTH_27 PF13463.1 68 6.7e-10 27.3 0.1 1 1 3.5e-10 1e-09 26.7 0.1 1 64 49 115 49 117 0.91 # 321 # 755 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 145 RepL PF05732.6 165 2.8e-08 21.1 0.0 1 1 1.2e-08 3.6e-08 20.7 0.0 14 129 6 129 2 135 0.74 # 321 # 755 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 145 HTH_24 PF13412.1 48 9.6e-08 19.4 0.0 1 1 6.2e-08 1.9e-07 18.5 0.0 19 47 73 101 71 102 0.95 # 321 # 755 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 145 HTH_11 PF08279.7 55 4.8e-06 14.2 0.2 1 1 5.1e-06 1.5e-05 12.6 0.1 16 48 72 104 53 106 0.92 # 321 # 755 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 145 MarR_2 PF12802.2 62 1.7e-10 28.5 0.0 1 1 9.5e-11 2.9e-10 27.8 0.0 2 54 48 104 47 110 0.92 # 321 # 755 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 145 HTH_5 PF01022.15 47 4.3e-06 14.4 0.5 1 1 3.2e-06 9.6e-06 13.3 0.1 19 45 75 101 74 103 0.96 # 321 # 755 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 145 TrmB PF01978.14 68 2.9e-06 15.0 0.8 1 1 1.8e-06 5.3e-06 14.2 0.8 22 56 71 105 43 118 0.71 # 321 # 755 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.430 1_1 - 145 HTH_Crp_2 PF13545.1 76 2.1e-06 15.5 0.0 1 1 1.1e-06 3.2e-06 15.0 0.0 26 58 69 101 40 111 0.86 # 321 # 755 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.430 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/6788f690-376d-4341-855d-7794b335fccd # Target file: checkm_output/bins/pm1063/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1063/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6788f690-376d-4341-855d-7794b335fccd checkm_output/bins/pm1063/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:33:43 2017 # [ok]