# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 138 HTH_IclR PF09339.5 52 1.2e-05 14.8 0.2 1 1 1.9e-06 2.2e-05 14.0 0.2 19 41 4 26 1 26 0.92 # 5930 # 6343 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.399 1_7 - 138 HTH_38 PF13936.1 44 5.4e-05 12.7 0.4 1 1 1.9e-05 0.00012 11.6 0.4 22 42 5 25 2 27 0.88 # 5930 # 6343 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.399 1_8 - 343 HTH_38 PF13936.1 44 8.1e-05 12.1 0.1 1 1 6.3e-05 0.00038 10.0 0.1 11 31 50 70 43 71 0.90 # 6677 # 7705 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.442 1_7 - 138 HTH_8 PF02954.14 42 1.9e-05 14.2 0.1 1 1 3e-06 3.6e-05 13.3 0.1 20 37 5 22 2 24 0.91 # 5930 # 6343 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.399 1_6 - 319 Rep_3 PF01051.16 222 5e-46 146.9 8.3 1 2 4.2e-47 5e-46 146.9 8.3 3 221 4 224 2 225 0.90 # 4966 # 5922 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_6 - 319 Rep_3 PF01051.16 222 5e-46 146.9 8.3 2 2 0.085 1 -1.2 0.0 125 144 273 292 255 302 0.84 # 4966 # 5922 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_8 - 343 MerR_1 PF13411.1 69 7.7e-23 70.1 0.0 1 1 5.9e-23 3.5e-22 68.0 0.0 2 68 4 71 3 72 0.97 # 6677 # 7705 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.442 1_7 - 138 MerR_1 PF13411.1 69 2.5e-06 17.2 0.1 1 1 1.1e-06 6.4e-06 15.9 0.0 2 39 5 42 4 54 0.85 # 5930 # 6343 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.399 1_7 - 138 NUMOD1 PF07453.8 37 1.9e-05 14.4 0.1 1 1 3e-06 3.5e-05 13.6 0.1 18 37 5 24 4 24 0.95 # 5930 # 6343 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.399 1_7 - 138 HTH_23 PF13384.1 50 4.7e-05 13.0 0.1 1 1 6.8e-06 8.1e-05 12.3 0.1 18 39 4 25 1 26 0.90 # 5930 # 6343 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.399 1_11 - 141 zf-DHHC PF01529.15 174 0.022 4.0 7.8 1 1 0.0053 0.064 2.5 7.8 104 150 22 68 2 140 0.48 # 9830 # 10252 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.243 1_8 - 343 MerR-DNA-bind PF09278.6 65 8.8e-11 32.1 2.5 1 2 3.7e-11 4.5e-10 29.8 0.7 2 65 47 104 46 104 0.90 # 6677 # 7705 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.442 1_8 - 343 MerR-DNA-bind PF09278.6 65 8.8e-11 32.1 2.5 2 2 0.08 0.96 -0.1 0.0 28 51 167 190 159 193 0.78 # 6677 # 7705 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.442 1_8 - 343 MerR PF00376.18 38 1.8e-18 55.9 0.1 1 1 1.2e-18 7.1e-18 53.9 0.1 2 38 5 41 4 41 0.98 # 6677 # 7705 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.442 1_7 - 138 MerR PF00376.18 38 1.4e-05 14.6 0.1 1 1 5.2e-06 3.1e-05 13.5 0.1 1 27 5 31 5 37 0.89 # 5930 # 6343 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.399 1_7 - 138 HTH_17 PF12728.2 51 3.3e-08 23.7 0.0 1 1 4.5e-09 5.4e-08 23.0 0.0 3 33 5 37 4 50 0.79 # 5930 # 6343 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.399 1_3 - 220 Seryl_tRNA_N PF02403.17 108 0.00016 11.6 9.4 1 2 2.8e-05 0.00034 10.6 2.6 49 100 2 53 1 61 0.90 # 1970 # 2629 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.489 1_3 - 220 Seryl_tRNA_N PF02403.17 108 0.00016 11.6 9.4 2 2 0.00093 0.011 5.7 0.6 45 102 58 114 52 115 0.87 # 1970 # 2629 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.489 1_3 - 220 AAA_13 PF13166.1 712 9.2e-05 10.8 3.8 1 1 9.2e-06 0.00011 10.6 3.8 287 395 6 111 1 124 0.58 # 1970 # 2629 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.489 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/8644403c-5e1d-4ed5-8ccd-6d48087b8b01 # Target file: checkm_output/bins/pm1061/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1061/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8644403c-5e1d-4ed5-8ccd-6d48087b8b01 checkm_output/bins/pm1061/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:33:42 2017 # [ok]