# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 186 HTH_IclR PF09339.5 52 1.4e-06 17.7 0.2 1 1 9.2e-07 5e-06 15.9 0.0 15 40 155 180 151 181 0.85 # 95 # 652 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_7 - 511 HTH_IclR PF09339.5 52 6.4e-06 15.6 0.3 1 2 0.042 0.23 1.0 0.0 24 36 165 177 163 186 0.81 # 4989 # 6521 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_7 - 511 HTH_IclR PF09339.5 52 6.4e-06 15.6 0.3 2 2 2.2e-05 0.00012 11.5 0.2 25 50 228 253 222 255 0.93 # 4989 # 6521 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_1 - 186 HTH_22 PF13309.1 64 3.1e-05 13.6 1.5 1 1 1.2e-05 0.00013 11.6 0.1 35 63 156 179 143 180 0.76 # 95 # 652 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_1 - 186 HTH_40 PF14493.1 91 7.2e-05 12.8 0.6 1 1 2.1e-05 0.00024 11.2 0.1 7 32 152 177 147 183 0.89 # 95 # 652 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_1 - 186 HTH_38 PF13936.1 44 3.4e-07 19.6 1.4 1 1 5.9e-08 6.5e-07 18.7 0.0 9 41 147 179 145 182 0.93 # 95 # 652 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_10 - 252 FmrO PF07091.6 251 2.3e-83 268.7 0.0 1 1 2.4e-84 2.7e-83 268.5 0.0 1 251 12 246 12 246 0.98 # 7790 # 8545 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_3 - 235 rve PF00665.21 120 3.6e-14 42.7 0.1 1 2 0.015 0.16 1.9 0.0 78 102 27 49 6 54 0.84 # 957 # 1661 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_3 - 235 rve PF00665.21 120 3.6e-14 42.7 0.1 2 2 6.1e-14 6.7e-13 38.7 0.0 9 119 75 182 70 183 0.89 # 957 # 1661 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_7 - 511 zf-ribbon_3 PF13248.1 26 0.042 3.1 11.6 1 3 0.0024 0.027 3.7 5.9 18 25 102 109 80 110 0.71 # 4989 # 6521 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_7 - 511 zf-ribbon_3 PF13248.1 26 0.042 3.1 11.6 2 3 7e-05 0.00077 8.6 0.8 18 24 102 108 100 116 0.66 # 4989 # 6521 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_7 - 511 zf-ribbon_3 PF13248.1 26 0.042 3.1 11.6 3 3 0.038 0.41 -0.1 0.1 4 9 460 465 457 471 0.71 # 4989 # 6521 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_3 - 235 HTH_Tnp_1 PF01527.15 76 2.7e-05 13.9 0.3 1 1 5.4e-06 5.9e-05 12.9 0.3 4 51 6 58 4 63 0.79 # 957 # 1661 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_3 - 235 DDE_3 PF13358.1 146 7.5e-05 12.3 0.0 1 1 2.1e-05 0.00023 10.7 0.0 32 90 82 141 59 146 0.87 # 957 # 1661 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_8 - 126 Cpn60_TCP1 PF00118.19 485 1.7e-27 85.9 0.0 1 1 1.8e-28 2e-27 85.6 0.0 388 483 10 102 4 104 0.95 # 6748 # 7125 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.672 1_1 - 186 HTH_Tnp_IS630 PF01710.11 120 1e-05 15.0 0.0 1 1 1.9e-06 2.1e-05 14.0 0.0 8 44 148 184 145 185 0.90 # 95 # 652 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_3 - 235 HTH_32 PF13565.1 77 1.4e-07 22.1 0.2 1 1 5.6e-08 6.2e-07 20.0 0.0 26 76 5 50 2 51 0.83 # 957 # 1661 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_3 - 235 HTH_23 PF13384.1 50 6.7e-07 18.8 0.7 1 2 0.032 0.17 1.6 0.0 7 27 11 35 7 36 0.69 # 957 # 1661 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_3 - 235 HTH_23 PF13384.1 50 6.7e-07 18.8 0.7 2 2 3.7e-06 2e-05 14.0 0.1 28 42 41 55 40 62 0.87 # 957 # 1661 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_1 - 186 HTH_23 PF13384.1 50 4.9e-06 16.0 0.3 1 1 8.8e-07 4.9e-06 16.0 0.3 5 39 146 180 142 184 0.87 # 95 # 652 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_1 - 186 HTH_7 PF02796.10 45 2.6e-14 42.7 1.1 1 1 5.1e-15 5.7e-14 41.6 0.1 1 44 141 181 141 182 0.97 # 95 # 652 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_1 - 186 HTH_29 PF13551.1 112 1.2e-05 15.3 0.6 1 2 0.025 0.27 1.3 0.2 24 46 114 136 88 153 0.67 # 95 # 652 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_1 - 186 HTH_29 PF13551.1 112 1.2e-05 15.3 0.6 2 2 1e-05 0.00011 12.2 0.0 4 35 151 181 148 184 0.90 # 95 # 652 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_3 - 235 DDE_Tnp_IS66 PF03050.9 271 2.6e-13 39.5 0.3 1 1 3e-14 3.3e-13 39.2 0.3 5 132 10 144 6 174 0.87 # 957 # 1661 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_3 - 235 HTH_28 PF13518.1 52 6.4e-06 16.0 1.2 1 1 5.1e-06 2.8e-05 14.0 1.2 22 36 40 54 13 55 0.76 # 957 # 1661 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_1 - 186 HTH_28 PF13518.1 52 1.5e-05 14.8 0.0 1 1 8.5e-06 4.7e-05 13.2 0.0 8 33 154 179 148 184 0.82 # 95 # 652 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_7 - 511 DZR PF12773.2 50 0.00058 9.5 4.2 1 2 0.00042 0.0047 6.7 3.0 15 38 84 109 72 117 0.62 # 4989 # 6521 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_7 - 511 DZR PF12773.2 50 0.00058 9.5 4.2 2 2 0.032 0.35 0.6 0.0 14 21 460 467 452 481 0.67 # 4989 # 6521 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_10 - 252 Methyltransf_23 PF13489.1 161 4e-05 13.2 0.0 1 1 5.3e-06 5.9e-05 12.6 0.0 7 52 89 132 82 198 0.78 # 7790 # 8545 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_3 - 235 DDE_Tnp_IS240 PF13610.1 140 8.4e-54 171.2 0.0 1 1 1.1e-54 1.2e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 957 # 1661 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_7 - 511 Zn-ribbon_8 PF09723.5 42 0.00043 10.1 6.7 1 2 0.0015 0.016 5.1 4.6 8 35 84 109 83 114 0.87 # 4989 # 6521 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_7 - 511 Zn-ribbon_8 PF09723.5 42 0.00043 10.1 6.7 2 2 0.0027 0.03 4.2 0.0 22 38 454 469 447 473 0.76 # 4989 # 6521 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_7 - 511 Zn_Tnp_IS1595 PF12760.2 46 0.019 4.7 10.6 1 2 0.007 0.077 2.8 1.1 18 29 101 111 91 123 0.79 # 4989 # 6521 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_7 - 511 Zn_Tnp_IS1595 PF12760.2 46 0.019 4.7 10.6 2 2 0.0058 0.064 3.0 0.0 18 28 449 469 442 477 0.65 # 4989 # 6521 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_1 - 186 TrmB PF01978.14 68 6.1e-06 15.8 0.0 1 1 1.1e-06 1.3e-05 14.8 0.0 19 44 155 180 150 181 0.89 # 95 # 652 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_1 - 186 HTH_20 PF12840.2 61 2.2e-07 20.5 0.2 1 2 0.0037 0.041 3.6 0.0 33 52 8 27 4 28 0.91 # 95 # 652 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_1 - 186 HTH_20 PF12840.2 61 2.2e-07 20.5 0.2 2 2 9.1e-06 0.0001 12.0 0.1 3 43 110 177 108 180 0.91 # 95 # 652 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/d51b4d64-605f-4cf8-9d7a-3bce5a730c90 # Target file: checkm_output/bins/pm1050/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1050/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d51b4d64-605f-4cf8-9d7a-3bce5a730c90 checkm_output/bins/pm1050/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:33:29 2017 # [ok]