# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_4 - 186 HTH_IclR PF09339.5 52 1.6e-06 17.7 0.2 1 1 9.2e-07 5.9e-06 15.9 0.0 15 40 155 180 151 181 0.85 # 2498 # 3055 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_4 - 511 HTH_IclR PF09339.5 52 7.6e-06 15.6 0.3 1 2 0.042 0.27 1.0 0.0 24 36 165 177 163 186 0.81 # 2708 # 4240 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_4 - 511 HTH_IclR PF09339.5 52 7.6e-06 15.6 0.3 2 2 2.2e-05 0.00014 11.5 0.2 25 50 228 253 222 255 0.93 # 2708 # 4240 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 2_4 - 186 HTH_22 PF13309.1 64 3.7e-05 13.6 1.5 1 1 1.2e-05 0.00015 11.6 0.1 35 63 156 179 143 180 0.76 # 2498 # 3055 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_4 - 186 HTH_40 PF14493.1 91 8.6e-05 12.8 0.6 1 1 2.1e-05 0.00028 11.2 0.1 7 32 152 177 147 183 0.89 # 2498 # 3055 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_4 - 186 HTH_38 PF13936.1 44 4e-07 19.6 1.4 1 1 5.9e-08 7.7e-07 18.7 0.0 9 41 147 179 145 182 0.93 # 2498 # 3055 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_2 - 252 FmrO PF07091.6 251 2.8e-83 268.7 0.0 1 1 2.4e-84 3.2e-83 268.5 0.0 1 251 12 246 12 246 0.98 # 614 # 1369 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.565 2_6 - 235 rve PF00665.21 120 4.3e-14 42.7 0.1 1 2 0.015 0.19 1.9 0.0 78 102 27 49 6 54 0.84 # 3360 # 4064 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_6 - 235 rve PF00665.21 120 4.3e-14 42.7 0.1 2 2 6.1e-14 7.9e-13 38.7 0.0 9 119 75 182 70 183 0.89 # 3360 # 4064 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_4 - 511 zf-ribbon_3 PF13248.1 26 0.049 3.1 11.6 1 3 0.0024 0.031 3.7 5.9 18 25 102 109 80 110 0.71 # 2708 # 4240 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_4 - 511 zf-ribbon_3 PF13248.1 26 0.049 3.1 11.6 2 3 7e-05 0.00091 8.6 0.8 18 24 102 108 100 116 0.66 # 2708 # 4240 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_4 - 511 zf-ribbon_3 PF13248.1 26 0.049 3.1 11.6 3 3 0.038 0.49 -0.1 0.1 4 9 460 465 457 471 0.71 # 2708 # 4240 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 2_6 - 235 HTH_Tnp_1 PF01527.15 76 3.2e-05 13.9 0.3 1 1 5.4e-06 7e-05 12.9 0.3 4 51 6 58 4 63 0.79 # 3360 # 4064 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_6 - 235 DDE_3 PF13358.1 146 8.9e-05 12.3 0.0 1 1 2.1e-05 0.00027 10.7 0.0 32 90 82 141 59 146 0.87 # 3360 # 4064 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_4 - 186 HTH_Tnp_IS630 PF01710.11 120 1.2e-05 15.0 0.0 1 1 1.9e-06 2.5e-05 14.0 0.0 8 44 148 184 145 185 0.90 # 2498 # 3055 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_6 - 235 HTH_32 PF13565.1 77 1.7e-07 22.1 0.2 1 1 5.6e-08 7.3e-07 20.0 0.0 26 76 5 50 2 51 0.83 # 3360 # 4064 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_6 - 235 HTH_23 PF13384.1 50 7.9e-07 18.8 0.7 1 2 0.032 0.21 1.6 0.0 7 27 11 35 7 36 0.69 # 3360 # 4064 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_6 - 235 HTH_23 PF13384.1 50 7.9e-07 18.8 0.7 2 2 3.7e-06 2.4e-05 14.0 0.1 28 42 41 55 40 62 0.87 # 3360 # 4064 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_4 - 186 HTH_23 PF13384.1 50 5.7e-06 16.0 0.3 1 1 8.8e-07 5.7e-06 16.0 0.3 5 39 146 180 142 184 0.87 # 2498 # 3055 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_4 - 186 HTH_7 PF02796.10 45 3e-14 42.7 1.1 1 1 5.1e-15 6.7e-14 41.6 0.1 1 44 141 181 141 182 0.97 # 2498 # 3055 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_4 - 186 HTH_29 PF13551.1 112 1.4e-05 15.3 0.6 1 2 0.025 0.32 1.3 0.2 24 46 114 136 88 153 0.67 # 2498 # 3055 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_4 - 186 HTH_29 PF13551.1 112 1.4e-05 15.3 0.6 2 2 1e-05 0.00013 12.2 0.0 4 35 151 181 148 184 0.90 # 2498 # 3055 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_6 - 235 DDE_Tnp_IS66 PF03050.9 271 3e-13 39.5 0.3 1 1 3e-14 3.9e-13 39.2 0.3 5 132 10 144 6 174 0.87 # 3360 # 4064 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_6 - 235 HTH_28 PF13518.1 52 7.6e-06 16.0 1.2 1 1 5.1e-06 3.3e-05 14.0 1.2 22 36 40 54 13 55 0.76 # 3360 # 4064 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_4 - 186 HTH_28 PF13518.1 52 1.8e-05 14.8 0.0 1 1 8.5e-06 5.5e-05 13.2 0.0 8 33 154 179 148 184 0.82 # 2498 # 3055 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_4 - 511 DZR PF12773.2 50 0.00069 9.5 4.2 1 2 0.00042 0.0055 6.7 3.0 15 38 84 109 72 117 0.62 # 2708 # 4240 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_4 - 511 DZR PF12773.2 50 0.00069 9.5 4.2 2 2 0.032 0.42 0.6 0.0 14 21 460 467 452 481 0.67 # 2708 # 4240 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 2_2 - 252 Methyltransf_23 PF13489.1 161 4.7e-05 13.2 0.0 1 1 5.3e-06 6.9e-05 12.6 0.0 7 52 89 132 82 198 0.78 # 614 # 1369 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.565 2_6 - 235 DDE_Tnp_IS240 PF13610.1 140 9.9e-54 171.2 0.0 1 1 1.1e-54 1.4e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 3360 # 4064 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_4 - 511 Zn-ribbon_8 PF09723.5 42 0.00051 10.1 6.7 1 2 0.0015 0.019 5.1 4.6 8 35 84 109 83 114 0.87 # 2708 # 4240 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_4 - 511 Zn-ribbon_8 PF09723.5 42 0.00051 10.1 6.7 2 2 0.0027 0.036 4.2 0.0 22 38 454 469 447 473 0.76 # 2708 # 4240 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_4 - 511 Zn_Tnp_IS1595 PF12760.2 46 0.023 4.7 10.6 1 2 0.007 0.091 2.8 1.1 18 29 101 111 91 123 0.79 # 2708 # 4240 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_4 - 511 Zn_Tnp_IS1595 PF12760.2 46 0.023 4.7 10.6 2 2 0.0058 0.076 3.0 0.0 18 28 449 469 442 477 0.65 # 2708 # 4240 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 2_4 - 186 TrmB PF01978.14 68 7.2e-06 15.8 0.0 1 1 1.1e-06 1.5e-05 14.8 0.0 19 44 155 180 150 181 0.89 # 2498 # 3055 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_4 - 186 HTH_20 PF12840.2 61 2.6e-07 20.5 0.2 1 2 0.0037 0.048 3.6 0.0 33 52 8 27 4 28 0.91 # 2498 # 3055 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_4 - 186 HTH_20 PF12840.2 61 2.6e-07 20.5 0.2 2 2 9.1e-06 0.00012 12.0 0.1 3 43 110 177 108 180 0.91 # 2498 # 3055 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/182f60c8-0123-4c6e-9b56-f53ef3ee8d76 # Target file: checkm_output/bins/pm1049/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1049/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/182f60c8-0123-4c6e-9b56-f53ef3ee8d76 checkm_output/bins/pm1049/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:33:20 2017 # [ok]