# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 312 MtrH PF02007.13 296 6e-55 176.5 0.0 1 1 4.9e-56 7.3e-55 176.2 0.0 6 291 7 281 2 284 0.93 # 5732 # 6667 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_5 - 231 TetR_N PF00440.18 47 5.6e-21 64.3 0.1 1 2 7.1e-21 1.1e-19 60.2 0.0 2 47 19 64 18 64 0.97 # 3581 # 4273 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.616 1_5 - 231 TetR_N PF00440.18 47 5.6e-21 64.3 0.1 2 2 0.013 0.19 1.7 0.1 1 16 179 194 179 196 0.91 # 3581 # 4273 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.616 1_11 - 288 TIGR00460 TIGR00460 315 3.3e-18 55.7 0.0 1 1 3.5e-19 5.2e-18 55.0 0.0 57 177 142 263 126 276 0.89 # 9196 # 10059 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 1_11 - 288 ACT PF01842.20 66 8.5e-13 37.9 0.0 1 1 2.2e-13 3.3e-12 36.0 0.0 1 50 6 54 6 72 0.78 # 9196 # 10059 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 1_4 - 400 TIGR01394 TIGR01394 594 0.00023 9.3 0.0 1 1 2.2e-05 0.00033 8.8 0.0 408 486 267 343 261 354 0.84 # 2303 # 3502 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.633 1_5 - 231 HTH_23 PF13384.1 50 0.00013 11.9 0.2 1 2 5e-05 0.00075 9.5 0.0 10 35 22 51 14 64 0.75 # 3581 # 4273 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.616 1_5 - 231 HTH_23 PF13384.1 50 0.00013 11.9 0.2 2 2 0.086 1.3 -0.8 0.1 9 20 97 108 96 110 0.84 # 3581 # 4273 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.616 1_10 - 307 THF_DHG_CYH_C PF02882.14 161 5.8e-70 223.7 1.4 1 1 5.3e-71 7.9e-70 223.3 1.4 1 159 124 284 124 286 0.99 # 8155 # 9075 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_5 - 231 HTH_Tnp_1_2 PF13022.1 142 0.00011 12.3 0.0 1 1 1.1e-05 0.00016 11.7 0.0 20 77 22 73 4 79 0.76 # 3581 # 4273 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.616 1_3 - 383 RPA PF10134.4 229 1.2e-09 27.9 0.1 1 1 1.6e-10 2.4e-09 26.9 0.1 45 215 194 355 152 363 0.76 # 924 # 2072 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.611 1_10 - 307 THF_DHG_CYH PF00763.18 117 8.2e-40 125.8 0.0 1 1 7.8e-41 1.2e-39 125.3 0.0 1 117 4 121 4 121 0.99 # 8155 # 9075 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_11 - 288 ACT_6 PF13740.1 76 3e-08 23.6 0.0 1 1 8.4e-09 1.3e-07 21.6 0.0 4 69 7 76 4 82 0.78 # 9196 # 10059 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 1_3 - 383 TrfA PF07042.6 282 1.3e-195 637.7 0.6 1 1 1.1e-196 1.7e-195 637.4 0.6 1 282 102 382 102 382 1.00 # 924 # 2072 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.611 1_14 - 72 Zn-ribbon_8 PF09723.5 42 4.4e-11 32.9 0.4 1 1 4.5e-12 6.7e-11 32.3 0.4 1 38 1 39 1 43 0.94 # 13987 # 14202 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_14 - 72 TF_Zn_Ribbon PF08271.7 43 0.0016 8.1 8.3 1 2 0.0027 0.04 3.6 0.4 19 27 5 13 3 16 0.82 # 13987 # 14202 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_14 - 72 TF_Zn_Ribbon PF08271.7 43 0.0016 8.1 8.3 2 2 5.5e-05 0.00082 9.0 4.4 1 26 6 35 6 39 0.78 # 13987 # 14202 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_14 - 72 Elf1 PF05129.8 81 3.7e-05 13.7 1.0 1 2 3.3e-06 4.9e-05 13.3 0.1 21 58 4 40 1 49 0.84 # 13987 # 14202 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_14 - 72 Elf1 PF05129.8 81 3.7e-05 13.7 1.0 2 2 0.097 1.5 -1.0 0.1 48 60 51 63 46 69 0.61 # 13987 # 14202 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_5 - 231 HTH_20 PF12840.2 61 3.8e-05 13.8 0.1 1 1 1.9e-05 0.00028 11.0 0.0 21 46 30 55 18 63 0.85 # 3581 # 4273 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.616 1_2 - 63 SSB PF00436.20 104 8e-08 22.4 0.0 1 1 6e-09 9e-08 22.3 0.0 71 104 19 51 10 51 0.93 # 687 # 875 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.545 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/56eeadb1-6acf-4a5b-b073-f9f27fe0f5b2 # Target file: checkm_output/bins/pm1034/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1034/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/56eeadb1-6acf-4a5b-b073-f9f27fe0f5b2 checkm_output/bins/pm1034/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:32:57 2017 # [ok]