# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 312 MtrH PF02007.13 296 5.2e-51 163.5 0.0 1 1 4.3e-52 6.4e-51 163.2 0.0 5 291 15 290 11 293 0.93 # 4787 # 5722 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_5 - 231 TetR_N PF00440.18 47 5.6e-21 64.3 0.1 1 2 7.1e-21 1.1e-19 60.2 0.0 2 47 19 64 18 64 0.97 # 3568 # 4260 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.616 1_5 - 231 TetR_N PF00440.18 47 5.6e-21 64.3 0.1 2 2 0.013 0.19 1.7 0.1 1 16 179 194 179 196 0.91 # 3568 # 4260 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.616 1_13 - 288 TIGR00460 TIGR00460 315 6.2e-18 54.8 0.0 1 1 5.3e-19 7.9e-18 54.4 0.0 56 158 141 244 121 269 0.88 # 12677 # 13540 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.507 1_4 - 400 TIGR01394 TIGR01394 594 0.00023 9.3 0.0 1 1 2.2e-05 0.00033 8.8 0.0 408 486 267 343 261 354 0.84 # 2290 # 3489 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.633 1_5 - 231 HTH_23 PF13384.1 50 0.00013 11.9 0.2 1 2 5e-05 0.00075 9.5 0.0 10 35 22 51 14 64 0.75 # 3568 # 4260 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.616 1_5 - 231 HTH_23 PF13384.1 50 0.00013 11.9 0.2 2 2 0.086 1.3 -0.8 0.1 9 20 97 108 96 110 0.84 # 3568 # 4260 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.616 1_14 - 296 THF_DHG_CYH_C PF02882.14 161 2.7e-70 224.8 3.7 1 1 2.7e-71 4e-70 224.3 3.7 1 160 124 282 124 283 0.99 # 13594 # 14481 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.560 1_5 - 231 HTH_Tnp_1_2 PF13022.1 142 0.00011 12.3 0.0 1 1 1.1e-05 0.00016 11.7 0.0 20 77 22 73 4 79 0.76 # 3568 # 4260 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.616 1_3 - 383 RPA PF10134.4 229 1.2e-09 27.9 0.1 1 1 1.6e-10 2.4e-09 26.9 0.1 45 215 194 355 152 363 0.76 # 911 # 2059 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.611 1_14 - 296 THF_DHG_CYH PF00763.18 117 1.7e-40 128.0 0.0 1 1 1.6e-41 2.3e-40 127.5 0.0 1 117 4 121 4 121 0.99 # 13594 # 14481 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.560 1_3 - 383 TrfA PF07042.6 282 1.3e-195 637.7 0.6 1 1 2.2e-196 1.7e-195 637.4 0.6 1 282 102 382 102 382 1.00 # 911 # 2059 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.611 1_15 - 75 TrfA PF07042.6 282 0.00012 11.1 0.1 1 1 1.7e-05 0.00013 11.0 0.1 237 269 21 53 5 58 0.83 # 14496 # 14720 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.551 1_9 - 109 Zn-ribbon_8 PF09723.5 42 1.3e-09 28.2 1.2 1 1 8.6e-11 1.3e-09 28.2 1.2 1 37 1 38 1 39 0.92 # 8874 # 9200 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_6 - 312 CdhD PF03599.11 386 0.00014 10.6 0.0 1 1 1.2e-05 0.00019 10.2 0.0 66 154 71 161 30 166 0.75 # 4787 # 5722 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_5 - 231 HTH_20 PF12840.2 61 3.8e-05 13.8 0.1 1 1 1.9e-05 0.00028 11.0 0.0 21 46 30 55 18 63 0.85 # 3568 # 4260 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.616 1_2 - 63 SSB PF00436.20 104 8e-08 22.4 0.0 1 1 6e-09 9e-08 22.3 0.0 71 104 19 51 10 51 0.93 # 674 # 862 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.545 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/16724f2a-04b4-4dc5-9a39-56e1ab79741e # Target file: checkm_output/bins/pm1033/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1033/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/16724f2a-04b4-4dc5-9a39-56e1ab79741e checkm_output/bins/pm1033/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:32:56 2017 # [ok]