# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_22 - 334 ABC_tran PF00005.22 137 1.4e-07 23.9 0.0 1 1 4.3e-09 2.3e-07 23.2 0.0 8 51 156 200 152 260 0.86 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_4 - 203 HTH_35 PF13693.1 78 0.00025 12.9 0.6 1 1 1.3e-05 0.0007 11.5 0.1 4 34 168 198 165 201 0.90 # 1684 # 2292 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_22 - 334 Sigma54_activat PF00158.21 168 5.4e-06 18.0 0.0 1 1 1.8e-07 9.8e-06 17.2 0.0 16 67 153 204 140 213 0.80 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_22 - 334 FtsK_SpoIIIE PF01580.13 205 4.4e-07 21.6 0.0 1 1 3.7e-08 6.8e-07 21.0 0.0 27 65 148 186 120 207 0.71 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 858 FtsK_SpoIIIE PF01580.13 205 4.6e-06 18.3 0.0 1 1 6.7e-07 1.2e-05 16.9 0.0 21 64 457 512 441 522 0.80 # 5860 # 8433 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_37 - 511 FtsK_SpoIIIE PF01580.13 205 0.00063 11.3 0.0 1 1 8.5e-05 0.0016 10.0 0.0 29 64 111 152 95 164 0.76 # 28929 # 30461 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_4 - 203 HTH_38 PF13936.1 44 3.3e-05 15.5 0.1 1 1 6e-07 3.3e-05 15.5 0.1 13 39 172 198 165 201 0.90 # 1684 # 2292 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_22 - 334 MobB PF03205.9 140 3.2e-06 19.0 0.2 1 1 1.7e-07 9.2e-06 17.5 0.0 2 38 161 196 160 208 0.81 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_27 - 213 HTH_8 PF02954.14 42 5.1e-06 18.1 0.2 1 2 0.0076 0.42 2.4 0.2 2 11 123 132 122 133 0.87 # 18761 # 19399 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_27 - 213 HTH_8 PF02954.14 42 5.1e-06 18.1 0.2 2 2 3.6e-06 0.0002 13.0 0.0 25 37 178 190 173 192 0.89 # 18761 # 19399 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_27 - 213 TetR_N PF00440.18 47 2.9e-06 19.0 0.0 1 2 0.086 4.7 -0.9 0.0 25 34 31 40 30 41 0.90 # 18761 # 19399 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_27 - 213 TetR_N PF00440.18 47 2.9e-06 19.0 0.0 2 2 3.2e-07 1.7e-05 16.5 0.0 16 43 171 198 163 199 0.88 # 18761 # 19399 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_22 - 334 AAA_19 PF13245.1 76 4.3e-05 15.4 0.1 1 1 1.8e-06 9.9e-05 14.2 0.1 6 47 155 191 151 221 0.80 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_40 - 239 CbiA PF01656.18 195 9.6e-08 23.7 0.9 1 1 3.9e-07 2.1e-05 16.0 0.9 3 167 5 144 3 170 0.69 # 31793 # 32509 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_4 - 203 Sigma70_r4_2 PF08281.7 54 0.0001 13.8 0.0 1 1 8.9e-06 0.00024 12.6 0.0 25 43 178 196 174 198 0.92 # 1684 # 2292 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_54 - 113 Sigma70_r4_2 PF08281.7 54 0.00025 12.6 0.0 1 1 1.6e-05 0.00043 11.8 0.0 24 49 37 62 35 63 0.94 # 40790 # 41128 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.501 1_24 - 560 rve PF00665.21 120 9.7e-27 85.6 0.0 1 1 3.3e-28 1.8e-26 84.7 0.0 2 120 173 313 172 313 0.95 # 14910 # 16589 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.647 1_1 - 210 AAA_23 PF13476.1 202 0.0004 12.8 0.0 1 1 1.8e-05 0.00049 12.5 0.0 16 47 74 120 50 198 0.66 # 183 # 812 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_37 - 511 AAA_23 PF13476.1 202 0.00059 12.2 1.9 1 1 4.2e-05 0.0012 11.3 1.8 23 43 130 151 126 264 0.88 # 28929 # 30461 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_22 - 334 Zeta_toxin PF06414.7 201 1.5e-06 19.4 0.0 1 1 4.7e-08 2.6e-06 18.7 0.0 11 51 154 194 144 206 0.82 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_36 - 1073 AAA_30 PF13604.1 196 3.4e-50 162.4 4.5 1 1 1.3e-51 3.4e-50 162.4 4.5 1 186 480 657 480 665 0.97 # 25706 # 28924 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_22 - 334 AAA_30 PF13604.1 196 3.4e-05 15.5 0.1 1 1 2e-06 5.6e-05 14.8 0.1 13 65 155 206 143 228 0.77 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_48 - 166 HTH_Tnp_1 PF01527.15 76 4.6e-05 15.4 0.2 1 1 5.8e-06 0.00016 13.7 0.0 22 47 139 164 123 165 0.86 # 36020 # 36517 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_27 - 213 HTH_Tnp_1 PF01527.15 76 0.00012 14.1 0.0 1 1 8.6e-06 0.00024 13.2 0.0 17 43 164 191 156 206 0.81 # 18761 # 19399 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_54 - 113 GerE PF00196.14 58 0.00016 13.1 0.0 1 1 4.8e-06 0.00026 12.4 0.0 15 42 36 63 34 65 0.92 # 40790 # 41128 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.501 1_37 - 511 TraG-D_C PF12696.2 128 4.5e-21 67.1 0.0 1 1 1.5e-22 8e-21 66.3 0.0 1 127 352 474 352 475 0.83 # 28929 # 30461 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_15 - 234 DivIC PF04977.10 80 0.013 7.1 8.8 1 2 0.00012 0.0068 8.0 0.1 16 39 42 65 29 68 0.74 # 8449 # 9150 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_15 - 234 DivIC PF04977.10 80 0.013 7.1 8.8 2 2 0.015 0.81 1.4 3.1 22 50 170 197 141 214 0.69 # 8449 # 9150 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_55 - 294 RepA_C PF04796.7 161 3.6e-44 142.3 0.0 1 1 8.8e-46 4.9e-44 141.8 0.0 1 160 81 234 81 235 0.94 # 41696 # 42577 # -1 # ID=1_55;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.543 1_36 - 1073 Herpes_Helicase PF02689.9 819 1.2e-05 15.2 0.4 1 3 0.0011 0.061 3.0 0.0 169 209 538 578 490 585 0.85 # 25706 # 28924 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_36 - 1073 Herpes_Helicase PF02689.9 819 1.2e-05 15.2 0.4 2 3 0.041 2.2 -2.2 0.0 397 454 639 704 625 709 0.67 # 25706 # 28924 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_36 - 1073 Herpes_Helicase PF02689.9 819 1.2e-05 15.2 0.4 3 3 1.5e-05 0.0008 9.2 0.0 736 782 851 898 829 917 0.77 # 25706 # 28924 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_22 - 334 cobW PF02492.14 178 5.3e-05 14.8 0.0 1 1 1.5e-06 8.4e-05 14.1 0.0 3 44 162 200 160 225 0.80 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_22 - 334 AAA_16 PF13191.1 185 2.5e-07 22.9 0.0 1 1 3.8e-08 5.3e-07 21.8 0.0 24 51 159 186 138 211 0.81 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_25 - 303 AAA_16 PF13191.1 185 8.8e-06 17.8 0.0 1 1 9.7e-06 0.00013 14.0 0.0 8 103 45 145 43 186 0.62 # 16592 # 17500 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_14 - 858 AAA_16 PF13191.1 185 7.3e-05 14.9 0.1 1 2 0.00028 0.0039 9.2 0.0 25 47 487 506 474 558 0.76 # 5860 # 8433 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_14 - 858 AAA_16 PF13191.1 185 7.3e-05 14.9 0.1 2 2 0.041 0.56 2.2 0.0 118 170 658 712 621 719 0.77 # 5860 # 8433 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_37 - 511 AAA_16 PF13191.1 185 0.00044 12.3 0.2 1 1 0.00021 0.0029 9.6 0.2 25 52 127 158 107 378 0.62 # 28929 # 30461 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_25 - 303 AAA_22 PF13401.1 131 2.3e-17 55.5 0.0 1 1 1.5e-18 4.2e-17 54.6 0.0 7 126 64 190 59 194 0.94 # 16592 # 17500 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_22 - 334 AAA_22 PF13401.1 131 6.9e-07 21.5 0.0 1 1 6.8e-08 1.9e-06 20.1 0.0 3 68 158 217 155 246 0.78 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 858 AAA_29 PF13555.1 62 1.8e-05 16.3 0.0 1 1 1.5e-06 4.2e-05 15.2 0.0 23 41 487 504 475 508 0.86 # 5860 # 8433 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_22 - 334 AAA_29 PF13555.1 62 5e-05 14.9 0.0 1 1 4.8e-06 0.00013 13.6 0.0 22 53 158 189 149 197 0.83 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_24 - 560 HTH_23 PF13384.1 50 2.2e-07 22.5 0.9 1 1 6.3e-08 8.7e-07 20.6 0.9 3 45 23 71 21 76 0.87 # 14910 # 16589 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.647 1_4 - 203 HTH_23 PF13384.1 50 2.7e-07 22.3 0.4 1 1 5.5e-08 7.5e-07 20.8 0.1 9 37 170 199 162 202 0.83 # 1684 # 2292 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_27 - 213 HTH_23 PF13384.1 50 0.00014 13.6 0.1 1 1 7.3e-05 0.001 10.9 0.0 22 38 176 192 157 195 0.88 # 18761 # 19399 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_48 - 166 HTH_23 PF13384.1 50 0.00014 13.6 0.0 1 1 3.9e-05 0.00054 11.8 0.0 15 38 135 161 124 164 0.82 # 36020 # 36517 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_4 - 203 HTH_7 PF02796.10 45 6.9e-08 24.4 1.1 1 2 0.0067 0.18 3.8 0.1 2 21 72 91 72 95 0.88 # 1684 # 2292 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_4 - 203 HTH_7 PF02796.10 45 6.9e-08 24.4 1.1 2 2 1.2e-07 3.2e-06 19.0 0.1 1 41 161 199 161 202 0.93 # 1684 # 2292 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_27 - 213 HTH_7 PF02796.10 45 8.8e-07 20.9 0.0 1 1 6e-08 1.6e-06 20.0 0.0 1 40 150 190 150 193 0.76 # 18761 # 19399 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_22 - 334 NB-ARC PF00931.17 287 0.00039 11.3 0.0 1 1 1.6e-05 0.00091 10.1 0.0 12 42 152 182 144 214 0.80 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_22 - 334 Mg_chelatase PF01078.16 207 0.00029 12.1 0.0 1 1 8.7e-06 0.00048 11.4 0.0 13 57 150 194 139 214 0.73 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_24 - 560 HTH_29 PF13551.1 112 1.9e-06 20.1 0.3 1 1 6.9e-08 1.9e-06 20.1 0.3 13 77 39 109 27 132 0.79 # 14910 # 16589 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.647 1_4 - 203 HTH_29 PF13551.1 112 3.6e-05 16.0 2.4 1 2 0.0073 0.2 3.9 0.1 77 110 25 58 7 60 0.79 # 1684 # 2292 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_4 - 203 HTH_29 PF13551.1 112 3.6e-05 16.0 2.4 2 2 4e-05 0.0011 11.2 0.1 7 34 175 201 169 202 0.86 # 1684 # 2292 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_31 - 247 TIGR03413 TIGR03413 248 1.9e-09 29.0 0.0 1 1 4.5e-11 2.5e-09 28.6 0.0 22 153 62 203 54 222 0.80 # 21441 # 22181 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.389 1_22 - 334 Arch_ATPase PF01637.13 234 1.9e-05 16.5 0.0 1 1 6.1e-07 3.4e-05 15.7 0.0 16 69 157 207 144 248 0.86 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_36 - 1073 PhoH PF02562.11 205 5.9e-10 30.7 2.2 1 2 5.7e-07 1.6e-05 16.3 0.3 5 40 482 518 479 531 0.82 # 25706 # 28924 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_36 - 1073 PhoH PF02562.11 205 5.9e-10 30.7 2.2 2 2 3.7e-06 0.0001 13.6 0.1 120 162 565 608 561 642 0.80 # 25706 # 28924 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_22 - 334 PhoH PF02562.11 205 1.3e-05 16.5 0.0 1 1 9.2e-07 2.5e-05 15.6 0.0 9 39 149 179 142 210 0.77 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_22 - 334 AAA_5 PF07728.9 139 1.5e-05 16.8 0.0 1 1 6.6e-07 3.6e-05 15.6 0.0 2 31 162 192 161 221 0.77 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_52 - 262 SprT-like PF10263.4 157 1.3e-36 117.7 0.0 1 1 4.3e-38 2.4e-36 116.8 0.0 1 150 12 235 12 242 0.93 # 39317 # 40102 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.532 1_22 - 334 ResIII PF04851.10 184 6.1e-05 15.0 0.0 1 1 2.1e-06 0.00012 14.1 0.0 22 58 141 194 100 214 0.73 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_37 - 511 TrwB_AAD_bind PF10412.4 386 4.2e-110 359.9 0.0 1 1 2.7e-111 5e-110 359.7 0.0 1 385 112 493 112 494 0.95 # 28929 # 30461 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_14 - 858 TrwB_AAD_bind PF10412.4 386 4.6e-06 17.5 0.1 1 1 1e-06 1.9e-05 15.5 0.0 16 51 487 522 480 531 0.92 # 5860 # 8433 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_22 - 334 TrwB_AAD_bind PF10412.4 386 1.2e-05 16.1 0.0 1 1 1e-06 1.9e-05 15.4 0.0 13 49 157 192 149 201 0.82 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_22 - 334 AAA_18 PF13238.1 129 5.6e-05 15.5 0.0 1 1 2.4e-06 0.00013 14.4 0.0 1 28 162 194 162 216 0.76 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_25 - 303 AAA_32 PF13654.1 509 4.4e-05 14.3 0.0 1 2 7.3e-06 0.0004 11.1 0.0 8 81 34 112 26 124 0.86 # 16592 # 17500 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_25 - 303 AAA_32 PF13654.1 509 4.4e-05 14.3 0.0 2 2 0.0097 0.53 0.8 0.0 472 503 255 286 241 291 0.90 # 16592 # 17500 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_22 - 334 DUF258 PF03193.11 161 6.2e-05 14.3 0.0 1 1 2.2e-06 0.00012 13.4 0.0 30 97 154 219 135 229 0.74 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_25 - 303 TniB PF05621.6 302 2.7e-213 698.1 6.2 1 1 5.4e-215 3e-213 697.9 6.2 1 302 1 302 1 302 1.00 # 16592 # 17500 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_37 - 511 DUF87 PF01935.12 229 4.7e-10 31.7 0.0 1 1 2.7e-11 7.4e-10 31.0 0.0 12 78 118 178 110 260 0.78 # 28929 # 30461 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_22 - 334 DUF87 PF01935.12 229 2.1e-05 16.5 0.0 1 1 1.5e-06 4.2e-05 15.5 0.0 26 61 162 196 156 208 0.84 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_24 - 560 HTH_28 PF13518.1 52 4.6e-09 28.3 0.1 1 1 1.4e-09 1.9e-08 26.3 0.1 1 46 26 78 26 87 0.76 # 14910 # 16589 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.647 1_27 - 213 HTH_28 PF13518.1 52 2.3e-05 16.5 0.1 1 1 1.9e-05 0.00026 13.1 0.0 15 32 174 191 153 193 0.80 # 18761 # 19399 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_4 - 203 HTH_28 PF13518.1 52 2.3e-05 16.4 1.6 1 1 1.9e-06 2.6e-05 16.3 0.1 8 31 174 198 168 201 0.82 # 1684 # 2292 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_48 - 166 HTH_28 PF13518.1 52 0.0004 12.5 2.8 1 1 3e-05 0.00041 12.5 0.0 11 33 136 161 125 165 0.80 # 36020 # 36517 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_3 - 111 Cytidylate_kin PF02224.13 158 4.5e-05 15.0 0.1 1 1 1.2e-06 6.7e-05 14.4 0.1 125 157 5 37 2 38 0.90 # 1165 # 1497 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.402 1_22 - 334 Sigma54_activ_2 PF14532.1 138 2.1e-07 23.2 0.0 1 1 6.9e-09 3.8e-07 22.3 0.0 14 68 152 206 145 213 0.91 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_22 - 334 MMR_HSR1 PF01926.18 116 0.00045 12.3 0.0 1 1 1.8e-05 0.001 11.2 0.0 2 24 162 189 161 244 0.73 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_22 - 334 DEAD PF00270.24 169 9.5e-06 17.2 0.1 1 1 3e-07 1.7e-05 16.5 0.1 11 70 156 212 147 232 0.79 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_4 - 203 HTH_31 PF13560.1 64 0.0015 10.8 4.9 1 1 3.4e-05 0.0019 10.5 2.9 5 34 171 199 142 201 0.86 # 1684 # 2292 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_22 - 334 DUF2075 PF09848.4 352 1.5e-05 16.1 0.0 1 1 3.7e-07 2e-05 15.7 0.0 1 58 159 213 159 240 0.70 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_36 - 1073 UvrD_C_2 PF13538.1 104 8.7e-16 50.1 0.6 1 1 6.3e-17 3.5e-15 48.2 0.2 3 102 801 900 799 902 0.78 # 25706 # 28924 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_22 - 334 T2SE PF00437.15 272 2.2e-53 172.9 0.1 1 1 9.2e-55 2.5e-53 172.7 0.1 3 270 11 311 9 313 0.92 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_1 - 210 T2SE PF00437.15 272 7.3e-06 17.1 0.0 1 1 3.2e-07 8.8e-06 16.8 0.0 114 222 58 201 16 207 0.76 # 183 # 812 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_24 - 560 HTH_Tnp_Mu_2 PF09039.6 108 5.6e-06 18.2 0.0 1 1 2.8e-07 1.5e-05 16.8 0.0 37 101 100 163 83 166 0.91 # 14910 # 16589 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.647 1_4 - 203 HTH_6 PF01418.12 77 0.00011 14.0 0.3 1 1 6e-06 0.00033 12.5 0.1 35 57 180 202 168 202 0.91 # 1684 # 2292 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_22 - 334 NACHT PF05729.7 166 1.6e-05 16.7 0.0 1 1 1.2e-06 3.4e-05 15.6 0.0 1 24 160 183 160 188 0.90 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 858 NACHT PF05729.7 166 0.0005 11.8 0.1 1 2 0.00049 0.013 7.2 0.1 3 19 489 505 488 514 0.86 # 5860 # 8433 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_14 - 858 NACHT PF05729.7 166 0.0005 11.8 0.1 2 2 0.022 0.61 1.8 0.0 100 161 728 789 692 794 0.78 # 5860 # 8433 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_22 - 334 UPF0079 PF02367.12 123 6.5e-06 17.9 0.0 1 1 2.3e-07 1.3e-05 17.0 0.0 11 45 155 189 145 193 0.85 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 858 AAA_17 PF13207.1 121 0.00052 12.9 0.8 1 2 0.00064 0.035 7.0 0.0 3 19 490 506 489 559 0.82 # 5860 # 8433 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_14 - 858 AAA_17 PF13207.1 121 0.00052 12.9 0.8 2 2 0.032 1.8 1.5 0.1 50 86 617 649 587 730 0.65 # 5860 # 8433 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_22 - 334 AAA_25 PF13481.1 194 0.00011 13.8 0.0 1 1 7e-06 0.00038 11.9 0.0 20 58 147 184 129 210 0.78 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_36 - 1073 Viral_helicase1 PF01443.13 234 2.1e-15 48.9 1.8 1 2 1e-07 5.7e-06 18.0 0.0 3 117 502 619 500 667 0.67 # 25706 # 28924 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_36 - 1073 Viral_helicase1 PF01443.13 234 2.1e-15 48.9 1.8 2 2 3.4e-11 1.9e-09 29.4 0.7 165 234 833 903 780 903 0.68 # 25706 # 28924 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_22 - 334 Pox_A32 PF04665.7 241 0.00017 13.0 0.0 1 1 5.5e-06 0.0003 12.2 0.0 14 44 160 190 149 211 0.82 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_37 - 511 AAA_14 PF13173.1 128 0.00027 12.9 0.1 1 2 0.00027 0.015 7.3 0.0 7 28 131 155 127 212 0.85 # 28929 # 30461 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_37 - 511 AAA_14 PF13173.1 128 0.00027 12.9 0.1 2 2 0.0076 0.42 2.6 0.0 60 77 342 370 302 397 0.60 # 28929 # 30461 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_4 - 203 HTH_Tnp_ISL3 PF13542.1 52 4.1e-05 14.8 0.3 1 1 1.8e-06 0.0001 13.6 0.3 24 47 177 199 172 199 0.84 # 1684 # 2292 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_23 - 117 Peptidase_M91 PF14891.1 174 5.6e-05 15.3 0.0 1 1 1.4e-06 7.5e-05 14.9 0.0 15 64 47 97 44 109 0.89 # 14450 # 14800 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 334 AAA_33 PF13671.1 143 0.00012 14.0 0.0 1 1 4.1e-06 0.00023 13.2 0.0 2 62 162 236 161 249 0.81 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_37 - 511 T4SS-DNA_transf PF02534.9 469 2.4e-16 51.4 0.0 1 2 0.034 1.8 -1.1 0.0 46 86 128 171 95 174 0.73 # 28929 # 30461 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_37 - 511 T4SS-DNA_transf PF02534.9 469 2.4e-16 51.4 0.0 2 2 1.6e-17 8.9e-16 49.4 0.0 250 440 300 489 297 503 0.88 # 28929 # 30461 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_22 - 334 RNA_helicase PF00910.17 107 0.00026 13.3 0.0 1 1 1.4e-05 0.00079 11.7 0.0 1 24 162 185 162 215 0.79 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_22 - 334 AAA_2 PF07724.9 171 5.1e-05 15.3 0.1 1 1 1.7e-06 9.4e-05 14.4 0.1 2 49 158 203 157 216 0.84 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_15 - 234 3HCDH_N PF02737.13 180 0.012 7.3 9.4 1 2 0.00053 0.029 6.0 1.4 3 55 12 57 6 74 0.56 # 8449 # 9150 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_15 - 234 3HCDH_N PF02737.13 180 0.012 7.3 9.4 2 2 0.0013 0.074 4.7 0.7 45 80 142 177 113 210 0.63 # 8449 # 9150 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_15 - 234 Med9 PF07544.8 83 0.00017 13.4 3.4 1 2 0.0001 0.0055 8.6 0.1 54 79 38 63 36 67 0.84 # 8449 # 9150 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_15 - 234 Med9 PF07544.8 83 0.00017 13.4 3.4 2 2 0.0015 0.081 4.8 0.5 24 46 168 189 149 215 0.75 # 8449 # 9150 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_38 - 141 Rossmann-like PF10727.4 127 7.7e-05 14.5 0.0 1 1 2e-06 0.00011 14.0 0.0 78 111 73 106 45 115 0.85 # 30461 # 30883 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_27 - 213 HTH_26 PF13443.1 63 2.4e-05 16.6 0.0 1 1 1e-06 5.8e-05 15.4 0.0 1 32 159 193 159 205 0.90 # 18761 # 19399 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_27 - 213 HTH_17 PF12728.2 51 6.3e-06 18.5 0.1 1 1 2.5e-06 6.9e-05 15.2 0.0 4 29 174 200 173 206 0.85 # 18761 # 19399 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_48 - 166 HTH_17 PF12728.2 51 8.1e-05 15.0 0.1 1 2 0.016 0.44 3.0 0.0 18 30 64 75 58 87 0.72 # 36020 # 36517 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_48 - 166 HTH_17 PF12728.2 51 8.1e-05 15.0 0.1 2 2 0.00013 0.0036 9.7 0.0 3 24 142 163 142 165 0.91 # 36020 # 36517 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_27 - 213 HTH_11 PF08279.7 55 3.3e-05 15.6 0.0 1 1 1.6e-06 8.9e-05 14.2 0.0 16 36 172 192 162 194 0.86 # 18761 # 19399 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_27 - 213 MarR_2 PF12802.2 62 5.6e-05 14.9 0.0 1 1 3.2e-06 0.00018 13.3 0.0 16 42 168 192 143 193 0.78 # 18761 # 19399 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_36 - 1073 PIF1 PF05970.9 364 1.5e-05 16.1 0.2 1 2 6.8e-06 0.00019 12.5 0.1 5 66 484 541 480 604 0.80 # 25706 # 28924 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_36 - 1073 PIF1 PF05970.9 364 1.5e-05 16.1 0.2 2 2 0.019 0.53 1.1 0.0 334 362 798 825 785 827 0.87 # 25706 # 28924 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_22 - 334 PIF1 PF05970.9 364 0.00043 11.3 0.0 1 1 2.6e-05 0.00071 10.6 0.0 21 57 158 194 150 208 0.80 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_27 - 213 HTH_5 PF01022.15 47 6.9e-05 14.6 0.0 1 1 3.4e-06 0.00019 13.2 0.0 15 35 171 191 159 193 0.87 # 18761 # 19399 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_36 - 1073 Helicase_RecD PF05127.9 177 0.0013 10.4 5.9 1 1 8.8e-06 0.00048 11.8 1.3 5 115 457 589 455 603 0.58 # 25706 # 28924 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_4 - 203 LacI PF00356.16 46 3.4e-05 15.5 0.7 1 1 1.3e-06 7e-05 14.5 0.7 2 19 182 199 181 201 0.92 # 1684 # 2292 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_14 - 858 AAA_10 PF12846.2 304 1.1e-31 102.4 0.0 1 1 2e-32 3.6e-31 100.7 0.0 2 293 487 763 486 770 0.88 # 5860 # 8433 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_37 - 511 AAA_10 PF12846.2 304 6.8e-12 37.4 0.0 1 2 2.3e-08 4.3e-07 21.6 0.0 3 47 128 173 126 216 0.86 # 28929 # 30461 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_37 - 511 AAA_10 PF12846.2 304 6.8e-12 37.4 0.0 2 2 6.2e-06 0.00011 13.7 0.0 214 286 329 416 308 433 0.67 # 28929 # 30461 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_22 - 334 AAA_10 PF12846.2 304 0.00011 13.8 0.0 1 1 1.2e-05 0.00022 12.8 0.0 3 28 161 186 159 218 0.74 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_27 - 213 HTH_20 PF12840.2 61 4.4e-05 15.3 0.5 1 2 0.064 3.5 -0.3 0.1 19 51 29 64 27 68 0.70 # 18761 # 19399 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_27 - 213 HTH_20 PF12840.2 61 4.4e-05 15.3 0.5 2 2 5.7e-06 0.00031 12.6 0.0 25 45 172 192 118 194 0.90 # 18761 # 19399 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_22 - 334 IstB_IS21 PF01695.12 178 2.6e-05 15.8 0.0 1 1 9.4e-07 5.2e-05 14.8 0.0 43 79 155 190 128 206 0.82 # 13452 # 14453 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_53 - 169 SSB PF00436.20 104 1e-43 139.6 0.3 1 1 2.2e-45 1.2e-43 139.4 0.3 1 99 6 105 6 113 0.96 # 40176 # 40682 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/cb547ff8-12c2-4da1-b02a-0d18fc6b3e93 # Target file: checkm_output/bins/pm1030/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1030/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cb547ff8-12c2-4da1-b02a-0d18fc6b3e93 checkm_output/bins/pm1030/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:32:55 2017 # [ok]