# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 96 Zn_Tnp_IS1 PF03811.8 36 3.6e-18 53.6 1.0 1 1 1.7e-18 8.5e-18 52.4 1.0 1 35 1 35 1 36 0.99 # 1879 # 2166 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_3 - 96 Sigma70_r4_2 PF08281.7 54 7.7e-06 14.1 0.0 1 1 2.2e-06 1.1e-05 13.6 0.0 18 47 56 84 50 86 0.83 # 1879 # 2166 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_3 - 96 GerE PF00196.14 58 6.7e-06 14.2 0.0 1 1 1.8e-06 9.1e-06 13.7 0.0 10 41 55 86 51 89 0.93 # 1879 # 2166 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_3 - 96 HTH_23 PF13384.1 50 2.8e-09 25.2 0.0 1 1 8.6e-10 4.3e-09 24.6 0.0 7 44 53 90 48 93 0.92 # 1879 # 2166 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_3 - 96 HTH_7 PF02796.10 45 2e-06 16.4 0.0 1 1 9.1e-07 4.6e-06 15.2 0.0 6 43 48 85 46 87 0.90 # 1879 # 2166 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_3 - 96 HTH_29 PF13551.1 112 8e-06 14.7 0.0 1 1 2.3e-06 1.2e-05 14.2 0.0 4 40 56 91 53 94 0.84 # 1879 # 2166 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_3 - 96 HTH_Tnp_IS1 PF12759.2 46 1.8e-25 76.9 0.1 1 1 5.2e-26 2.6e-25 76.4 0.1 1 44 43 86 43 88 0.98 # 1879 # 2166 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_3 - 96 HTH_28 PF13518.1 52 9.6e-07 17.5 0.0 1 1 3.7e-07 1.9e-06 16.6 0.0 5 39 56 90 54 93 0.90 # 1879 # 2166 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_3 - 96 HTH_24 PF13412.1 48 2.6e-05 12.3 0.0 1 1 1e-05 5.1e-05 11.4 0.0 21 40 67 86 66 86 0.92 # 1879 # 2166 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_3 - 96 Zn-ribbon_8 PF09723.5 42 3.7e-05 12.4 0.8 1 2 0.0021 0.011 4.5 0.1 27 35 6 14 2 19 0.80 # 1879 # 2166 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_3 - 96 Zn-ribbon_8 PF09723.5 42 3.7e-05 12.4 0.8 2 2 0.00056 0.0028 6.4 0.1 6 23 30 47 29 54 0.79 # 1879 # 2166 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_3 - 96 Zn_Tnp_IS1595 PF12760.2 46 1.4e-06 16.8 1.1 1 1 5e-07 2.5e-06 16.0 1.1 19 45 6 37 3 38 0.73 # 1879 # 2166 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_3 - 96 Sigma70_ECF PF07638.6 185 2.8e-05 12.5 0.0 1 1 5.9e-06 2.9e-05 12.4 0.0 133 173 45 85 18 93 0.90 # 1879 # 2166 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/256af051-1648-4c97-afae-4bc6b0d5c55c # Target file: checkm_output/bins/pm1027/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1027/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/256af051-1648-4c97-afae-4bc6b0d5c55c checkm_output/bins/pm1027/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:32:45 2017 # [ok]