# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_1 - 380 K_oxygenase PF13434.1 341 3e-07 18.7 0.5 1 2 0.0039 0.027 2.4 0.3 189 223 90 122 79 125 0.76 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 K_oxygenase PF13434.1 341 3e-07 18.7 0.5 2 2 9e-07 6.3e-06 14.3 0.0 130 233 210 304 190 335 0.78 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 FAD_binding_3 PF01494.14 356 9.8e-05 10.6 1.8 1 2 5.3e-05 0.00037 8.7 0.9 3 32 93 122 91 125 0.95 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 FAD_binding_3 PF01494.14 356 9.8e-05 10.6 1.8 2 2 0.018 0.12 0.4 0.0 5 33 267 295 265 301 0.91 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 FAD_oxidored PF12831.2 428 5.2e-08 21.4 5.9 1 2 1.4e-08 9.7e-08 20.5 4.0 2 41 94 132 93 152 0.83 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 FAD_oxidored PF12831.2 428 5.2e-08 21.4 5.9 2 2 0.017 0.12 0.5 0.0 85 118 299 331 252 344 0.70 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 Pyr_redox_3 PF13738.1 203 4.8e-15 45.3 0.0 1 3 1.8e-06 1.2e-05 14.5 0.0 167 199 91 123 61 136 0.85 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 Pyr_redox_3 PF13738.1 203 4.8e-15 45.3 0.0 2 3 3.2e-09 2.3e-08 23.5 0.0 115 201 212 297 165 299 0.77 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 Pyr_redox_3 PF13738.1 203 4.8e-15 45.3 0.0 3 3 0.0036 0.025 3.7 0.0 88 130 309 350 301 363 0.83 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 NAD_binding_7 PF13241.1 103 7.3e-07 18.7 2.4 1 2 5.6e-05 0.00039 9.9 0.7 9 38 93 122 90 152 0.90 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 NAD_binding_7 PF13241.1 103 7.3e-07 18.7 2.4 2 2 0.00023 0.0016 7.9 0.0 8 40 264 296 257 344 0.79 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 3_1 - 235 rve PF00665.21 120 2.3e-14 42.7 0.1 1 2 0.015 0.1 1.9 0.0 78 102 27 49 6 54 0.84 # 53 # 757 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_1 - 235 rve PF00665.21 120 2.3e-14 42.7 0.1 2 2 6.1e-14 4.2e-13 38.7 0.0 9 119 75 182 70 183 0.89 # 53 # 757 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_1 - 380 F420_oxidored PF03807.12 96 0.0006 9.5 5.1 1 2 0.0012 0.0082 5.8 1.1 2 33 94 121 93 125 0.87 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 F420_oxidored PF03807.12 96 0.0006 9.5 5.1 2 2 0.0032 0.022 4.4 0.1 1 35 265 295 265 302 0.88 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 3_1 - 235 HTH_Tnp_1 PF01527.15 76 1.7e-05 13.9 0.3 1 1 5.4e-06 3.8e-05 12.9 0.3 4 51 6 58 4 63 0.79 # 53 # 757 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_1 - 235 DDE_3 PF13358.1 146 4.8e-05 12.3 0.0 1 1 2.1e-05 0.00015 10.7 0.0 32 90 82 141 59 146 0.87 # 53 # 757 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_1 - 380 Thi4 PF01946.12 230 4.1e-05 11.9 0.5 1 1 1.3e-05 9e-05 10.7 0.5 19 70 93 143 90 151 0.88 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 Pyr_redox PF00070.22 80 5.4e-21 64.1 5.1 1 2 1.4e-06 9.5e-06 15.2 1.2 2 31 94 123 93 125 0.95 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 Pyr_redox PF00070.22 80 5.4e-21 64.1 5.1 2 2 1.7e-17 1.2e-16 50.1 0.1 1 71 265 334 265 345 0.90 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 HI0933_like PF03486.9 409 1.1e-06 16.5 3.6 1 2 6e-07 4.2e-06 14.5 2.9 2 33 93 124 92 132 0.91 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 HI0933_like PF03486.9 409 1.1e-06 16.5 3.6 2 2 0.016 0.11 -0.1 0.0 83 155 279 347 274 350 0.77 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 3_1 - 235 HTH_32 PF13565.1 77 9.1e-08 22.1 0.2 1 1 5.6e-08 3.9e-07 20.0 0.0 26 76 5 50 2 51 0.83 # 53 # 757 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_1 - 235 HTH_23 PF13384.1 50 4.2e-07 18.8 0.7 1 2 0.016 0.11 1.6 0.0 7 27 11 35 7 36 0.69 # 53 # 757 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_1 - 235 HTH_23 PF13384.1 50 4.2e-07 18.8 0.7 2 2 1.9e-06 1.3e-05 14.0 0.1 28 42 41 55 40 62 0.87 # 53 # 757 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_1 - 380 NAD_binding_10 PF13460.1 183 0.0014 7.8 5.9 1 2 0.00019 0.0013 7.9 2.2 1 31 94 123 94 128 0.93 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 NAD_binding_10 PF13460.1 183 0.0014 7.8 5.9 2 2 0.029 0.21 0.7 0.1 2 32 267 296 266 327 0.86 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 Glyco_trans_4_4 PF13579.1 160 4.2e-05 12.9 1.8 1 1 7.2e-06 5.1e-05 12.6 0.1 2 26 270 300 270 332 0.71 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 GIDA PF01134.17 392 8.4e-08 20.5 2.9 1 2 1.2e-08 8.4e-08 20.5 2.9 1 52 93 146 93 159 0.88 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 GIDA PF01134.17 392 8.4e-08 20.5 2.9 2 2 0.059 0.42 -1.6 0.1 3 32 267 296 265 306 0.86 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 NAD_binding_8 PF13450.1 68 2.7e-06 16.6 1.1 1 2 3.9e-07 2.7e-06 16.6 1.1 1 35 96 129 96 149 0.90 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 NAD_binding_8 PF13450.1 68 2.7e-06 16.6 1.1 2 2 0.056 0.39 0.1 0.1 1 25 268 292 268 297 0.79 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 3_1 - 235 DDE_Tnp_IS66 PF03050.9 271 1.6e-13 39.5 0.3 1 1 3e-14 2.1e-13 39.2 0.3 5 132 10 144 6 174 0.87 # 53 # 757 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_1 - 380 Trp_halogenase PF04820.9 454 0.001 6.8 4.2 1 2 0.00014 0.00098 6.8 3.0 2 47 94 136 93 144 0.75 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 Trp_halogenase PF04820.9 454 0.001 6.8 4.2 2 2 0.086 0.6 -2.4 0.0 390 418 248 274 246 336 0.53 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 3_1 - 235 HTH_28 PF13518.1 52 4.1e-06 16.0 1.2 1 1 2.5e-06 1.8e-05 14.0 1.2 22 36 40 54 13 55 0.76 # 53 # 757 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 4_2 - 213 TIGR01292 TIGR01292 300 1.1e-13 39.4 0.2 1 1 5e-14 1.8e-13 38.7 0.2 224 296 4 78 2 80 0.89 # 122 # 760 # 1 # ID=4_2;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 2_1 - 380 TIGR01292 TIGR01292 300 4.3e-08 21.1 1.3 1 2 1.8e-05 6.3e-05 10.6 1.3 2 39 93 130 92 136 0.90 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 TIGR01292 TIGR01292 300 4.3e-08 21.1 1.3 2 2 0.0001 0.00035 8.2 0.0 142 201 264 327 204 340 0.72 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 FAD_binding_2 PF00890.19 417 2.2e-07 19.1 5.5 1 1 3.1e-08 2.2e-07 19.1 5.5 2 32 94 124 93 131 0.91 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 AlaDh_PNT_C PF01262.16 168 1.6e-08 23.5 4.1 1 2 9e-07 6.3e-06 15.0 1.3 3 50 74 121 72 124 0.91 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 AlaDh_PNT_C PF01262.16 168 1.6e-08 23.5 4.1 2 2 6e-05 0.00042 9.1 0.1 19 62 262 305 253 336 0.85 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 3HCDH_N PF02737.13 180 0.00012 10.8 7.1 1 2 0.0022 0.016 4.0 3.1 1 30 93 122 93 127 0.93 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 3HCDH_N PF02737.13 180 0.00012 10.8 7.1 2 2 8.9e-05 0.00062 8.6 0.1 2 36 266 300 265 355 0.74 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 Glyco_transf_4 PF13439.1 177 3.4e-07 19.3 0.6 1 1 8.9e-08 6.2e-07 18.4 0.1 13 39 270 296 267 347 0.83 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 3_1 - 235 DDE_Tnp_IS240 PF13610.1 140 5.3e-54 171.2 0.0 1 1 1.1e-54 7.4e-54 170.7 0.0 4 139 75 212 73 213 0.99 # 53 # 757 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_1 - 380 Pyr_redox_2 PF07992.9 201 2.4e-29 91.8 0.1 1 1 1e-29 3.6e-29 91.2 0.1 1 186 93 327 93 343 0.87 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 4_2 - 213 Pyr_redox_2 PF07992.9 201 1.3e-14 43.7 0.7 1 3 0.0028 0.0099 4.9 0.0 108 124 4 20 3 24 0.88 # 122 # 760 # 1 # ID=4_2;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 4_2 - 213 Pyr_redox_2 PF07992.9 201 1.3e-14 43.7 0.7 2 3 6.3e-13 2.2e-12 36.4 0.1 160 199 20 60 20 62 0.92 # 122 # 760 # 1 # ID=4_2;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 4_2 - 213 Pyr_redox_2 PF07992.9 201 1.3e-14 43.7 0.7 3 3 0.08 0.28 0.1 0.0 9 58 69 117 67 171 0.72 # 122 # 760 # 1 # ID=4_2;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 2_1 - 380 DFP PF04127.10 185 0.00015 10.5 2.8 1 2 0.0003 0.0021 6.8 0.7 28 51 99 122 94 147 0.84 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 DFP PF04127.10 185 0.00015 10.5 2.8 2 2 0.0033 0.023 3.4 0.1 32 53 275 296 270 332 0.76 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 DAO PF01266.19 358 4.3e-08 21.5 8.0 1 3 2.2e-08 1.5e-07 19.6 1.1 2 35 94 127 93 155 0.85 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 DAO PF01266.19 358 4.3e-08 21.5 8.0 2 3 0.077 0.54 -1.9 0.0 3 31 267 295 265 301 0.73 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_1 - 380 DAO PF01266.19 358 4.3e-08 21.5 8.0 3 3 0.00052 0.0036 5.3 0.2 151 189 307 344 292 354 0.88 # 21 # 1160 # -1 # ID=2_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/6ba7aa5e-51c0-4939-a639-0b1cd363dd86 # Target file: checkm_output/bins/pm1022/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1022/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6ba7aa5e-51c0-4939-a639-0b1cd363dd86 checkm_output/bins/pm1022/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:32:34 2017 # [ok]