# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 143 HTH_IclR PF09339.5 52 5.2e-05 12.8 0.1 1 1 8.1e-06 9.7e-05 11.9 0.1 20 39 5 24 2 26 0.90 # 2392 # 2820 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 1_1 - 468 rve_3 PF13683.1 67 1.6e-05 14.3 0.0 1 1 3.3e-06 4e-05 13.1 0.0 16 56 252 295 237 295 0.88 # 71 # 1474 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_4 - 233 Rep_3 PF01051.16 222 2.3e-62 200.3 5.3 1 1 2.2e-63 2.6e-62 200.2 5.3 3 222 4 220 2 220 0.95 # 2823 # 3521 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.340 1_1 - 468 rve PF00665.21 120 1e-10 31.7 0.0 1 1 1.5e-11 1.8e-10 30.9 0.0 3 119 141 265 139 266 0.82 # 71 # 1474 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_7 - 421 DDE_Tnp_1 PF01609.16 213 9.5e-36 113.2 0.2 1 1 1.7e-36 2.1e-35 112.1 0.0 6 213 128 362 123 362 0.96 # 6873 # 8135 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.340 1_3 - 143 DivIC PF04977.10 80 8.8e-05 12.0 4.6 1 1 1.4e-05 0.00016 11.1 4.6 22 57 75 110 70 114 0.83 # 2392 # 2820 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 1_3 - 143 MerR_1 PF13411.1 69 1.3e-06 18.1 0.6 1 1 2.1e-07 2.5e-06 17.2 0.0 2 32 5 36 4 62 0.82 # 2392 # 2820 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 1_3 - 143 NUMOD1 PF07453.8 37 0.00019 11.3 1.0 1 1 2.4e-05 0.00028 10.7 0.1 18 37 5 24 4 24 0.95 # 2392 # 2820 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 1_1 - 468 LZ_Tnp_IS481 PF13011.1 85 1.6e-07 21.6 0.1 1 1 3.9e-08 4.6e-07 20.1 0.1 13 61 15 63 4 78 0.89 # 71 # 1474 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_1 - 468 HTH_32 PF13565.1 77 2.7e-08 24.5 0.1 1 2 0.03 0.36 1.7 0.1 44 77 24 48 12 48 0.74 # 71 # 1474 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_1 - 468 HTH_32 PF13565.1 77 2.7e-08 24.5 0.1 2 2 2.3e-09 2.7e-08 24.5 0.1 3 77 45 117 43 117 0.74 # 71 # 1474 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_7 - 421 DDE_Tnp_1_4 PF13701.1 449 3.9e-28 87.6 3.5 1 2 0.0052 0.062 1.2 0.0 11 42 5 36 3 62 0.72 # 6873 # 8135 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.340 1_7 - 421 DDE_Tnp_1_4 PF13701.1 449 3.9e-28 87.6 3.5 2 2 1.5e-28 1.7e-27 85.4 2.2 137 438 122 418 41 420 0.82 # 6873 # 8135 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.340 1_1 - 468 HTH_23 PF13384.1 50 1.5e-12 36.9 0.9 1 1 4.2e-13 5e-12 35.2 0.9 2 48 11 58 10 60 0.94 # 71 # 1474 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_1 - 468 HTH_29 PF13551.1 112 9.9e-17 51.1 1.2 1 1 2.1e-17 2.5e-16 49.8 1.2 1 112 16 121 16 121 0.89 # 71 # 1474 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_3 - 143 TIGR02209 TIGR02209 85 0.00039 10.1 4.4 1 1 2.4e-05 0.00029 10.5 2.6 28 60 74 106 59 107 0.87 # 2392 # 2820 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 1_1 - 468 HTH_28 PF13518.1 52 3.1e-13 39.5 2.6 1 1 4.4e-14 5.3e-13 38.8 1.6 2 48 16 63 15 70 0.93 # 71 # 1474 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_1 - 468 HTH_24 PF13412.1 48 3.2e-05 13.3 0.2 1 2 1.6e-05 0.0002 10.7 0.1 15 43 25 53 17 55 0.82 # 71 # 1474 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_1 - 468 HTH_24 PF13412.1 48 3.2e-05 13.3 0.2 2 2 0.065 0.78 -0.8 0.0 11 26 341 356 339 359 0.84 # 71 # 1474 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_1 - 468 HTH_Tnp_ISL3 PF13542.1 52 4.1e-06 15.9 0.7 1 2 8.9e-06 0.00011 11.4 0.3 19 51 18 51 13 52 0.93 # 71 # 1474 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_1 - 468 HTH_Tnp_ISL3 PF13542.1 52 4.1e-06 15.9 0.7 2 2 0.0081 0.097 1.9 0.0 40 51 109 120 106 121 0.83 # 71 # 1474 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_3 - 143 MerR PF00376.18 38 2.4e-07 20.2 0.1 1 1 3.7e-08 4.5e-07 19.4 0.1 1 32 5 36 5 39 0.85 # 2392 # 2820 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 1_3 - 143 HTH_17 PF12728.2 51 4.1e-08 23.4 0.1 1 1 4.9e-09 5.9e-08 22.9 0.1 2 43 4 47 3 53 0.78 # 2392 # 2820 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 1_1 - 468 FaeA PF04703.7 62 2.5e-05 14.4 0.1 1 1 4.4e-06 5.2e-05 13.4 0.1 13 56 25 68 11 72 0.82 # 71 # 1474 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_1 - 468 HTH_21 PF13276.1 60 2.7e-05 14.1 0.0 1 1 2.2e-06 2.7e-05 14.1 0.0 29 59 99 129 76 130 0.80 # 71 # 1474 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/ffa129e0-e80d-466f-9247-0af8e6edf677 # Target file: checkm_output/bins/pm1010/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1010/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ffa129e0-e80d-466f-9247-0af8e6edf677 checkm_output/bins/pm1010/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:31:52 2017 # [ok]