# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Reticulon PF02453.17 AAFJ01000010_00004 - 0.011 15.7 3.4 0.011 15.7 3.4 1.2 1 0 0 1 1 1 0 Reticulon TK PF00265.18 AAFJ01000010_00005 - 7e-20 71.6 1.2 1.6e-19 70.5 1.2 1.6 1 1 0 1 1 1 1 Thymidine kinase AAA_14 PF13173.6 AAFJ01000010_00005 - 0.003 17.6 0.3 0.004 17.2 0.3 1.2 1 0 0 1 1 1 1 AAA domain Terminase_6 PF03237.15 AAFJ01000010_00005 - 0.0088 15.7 0.4 0.03 14.0 0.4 1.9 1 1 0 1 1 1 1 Terminase-like family FcoT PF10862.8 AAFJ01000010_00006 - 0.031 13.9 0.1 0.034 13.7 0.1 1.1 1 0 0 1 1 1 0 FcoT-like thioesterase domain ECH_2 PF16113.5 AAFJ01000010_00006 - 0.044 13.3 0.5 0.045 13.3 0.5 1.0 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase EF-hand_7 PF13499.6 AAFJ01000010_00006 - 0.068 13.6 0.2 2.6 8.5 0.2 2.1 1 1 0 1 1 1 0 EF-hand domain pair DUF3973 PF13119.6 AAFJ01000010_00007 - 0.088 12.9 2.7 0.35 11.0 1.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3973) Toprim_2 PF13155.6 AAFJ01000010_00010 - 2.2e-11 44.0 0.0 4.3e-11 43.1 0.0 1.5 1 0 0 1 1 1 1 Toprim-like Toprim_3 PF13362.6 AAFJ01000010_00010 - 4.2e-05 23.8 0.0 8.4e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Toprim domain zf-CHC2 PF01807.20 AAFJ01000010_00010 - 0.0061 16.4 0.1 0.037 13.8 0.1 2.2 2 0 0 2 2 2 1 CHC2 zinc finger DUF3854 PF12965.7 AAFJ01000010_00010 - 0.094 12.7 0.0 0.29 11.1 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3854) Peptidase_C39 PF03412.15 AAFJ01000010_00015 - 2.5e-17 62.9 0.0 3.3e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase C39 family Peptidase_C70 PF12385.8 AAFJ01000010_00015 - 3e-05 24.0 0.0 4.2e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Papain-like cysteine protease AvrRpt2 Phage_integrase PF00589.22 AAFJ01000010_00017 - 2.8e-20 72.8 2.1 4.4e-20 72.2 2.1 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 AAFJ01000010_00017 - 5.5e-05 23.4 2.7 0.081 13.2 0.1 3.1 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 AAFJ01000010_00017 - 0.00022 21.5 8.0 0.00022 21.5 8.0 2.7 2 2 0 2 2 2 1 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 AAFJ01000010_00017 - 0.0026 18.2 5.5 0.0026 18.2 5.5 2.5 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.7 AAFJ01000010_00017 - 0.0035 17.5 0.4 0.0067 16.5 0.4 1.5 1 0 0 1 1 1 1 Integrase HMG-CoA_red PF00368.18 AAFJ01000010_00018 - 0.083 11.9 0.0 0.1 11.6 0.0 1.1 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A reductase WGR PF05406.15 AAFJ01000010_00019 - 0.00012 22.0 0.3 0.00014 21.8 0.3 1.1 1 0 0 1 1 1 1 WGR domain Latarcin PF10279.9 AAFJ01000010_00019 - 0.01 16.2 0.1 0.015 15.7 0.1 1.2 1 0 0 1 1 1 0 Latarcin precursor Tantalus PF15386.6 AAFJ01000010_00019 - 0.047 13.8 0.1 0.047 13.8 0.1 1.9 1 1 1 2 2 2 0 Drosophila Tantalus-like HD PF01966.22 AAFJ01000010_00021 - 1.8e-10 41.1 0.9 3.6e-10 40.1 0.9 1.6 1 0 0 1 1 1 1 HD domain HD_6 PF18019.1 AAFJ01000010_00021 - 0.029 14.5 0.1 0.062 13.4 0.1 1.5 1 0 0 1 1 1 0 HD domain TrwB_AAD_bind PF10412.9 AAFJ01000010_00022 - 4e-17 62.2 0.0 6.4e-17 61.5 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 AAFJ01000010_00022 - 2e-15 56.6 0.5 2.7e-15 56.2 0.5 1.1 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 AAFJ01000010_00022 - 1.3e-10 41.3 0.1 2.7e-10 40.3 0.1 1.5 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG DUF87 PF01935.17 AAFJ01000010_00022 - 1.2e-05 25.6 0.5 2.9e-05 24.3 0.1 1.9 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_10 PF12846.7 AAFJ01000010_00022 - 1.3e-05 24.3 0.3 0.012 14.5 0.0 2.6 2 1 0 2 2 2 2 AAA-like domain DUF853 PF05872.12 AAFJ01000010_00022 - 0.0034 16.0 0.0 0.0076 14.9 0.0 1.6 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.6 AAFJ01000010_00022 - 0.007 16.6 0.0 0.023 15.0 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AAFJ01000010_00022 - 0.016 15.6 0.0 0.078 13.4 0.0 2.1 3 0 0 3 3 3 0 AAA ATPase domain ATPase_2 PF01637.18 AAFJ01000010_00022 - 0.018 14.9 0.1 0.064 13.2 0.1 2.1 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea ABC_tran PF00005.27 AAFJ01000010_00022 - 0.034 14.7 0.1 0.097 13.2 0.1 2.0 1 1 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.12 AAFJ01000010_00022 - 0.042 13.1 0.0 0.087 12.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin HTH_3 PF01381.22 AAFJ01000010_00025 - 1.2e-10 41.3 0.0 1.9e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 AAFJ01000010_00025 - 1.2e-08 34.8 0.0 1.5e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 AAFJ01000010_00025 - 4.5e-05 23.7 0.0 0.0001 22.5 0.0 1.6 1 1 1 2 2 2 1 Helix-turn-helix domain AAA_19 PF13245.6 AAFJ01000010_00026 - 6.3e-14 52.5 0.2 4.6e-12 46.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain UvrD-helicase PF00580.21 AAFJ01000010_00026 - 6.5e-12 45.6 17.8 8.3e-10 38.7 1.7 4.0 1 1 1 3 3 3 2 UvrD/REP helicase N-terminal domain Viral_helicase1 PF01443.18 AAFJ01000010_00026 - 6.1e-11 42.5 0.3 2.8e-05 24.0 0.1 3.3 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase UvrD_C PF13361.6 AAFJ01000010_00026 - 4.3e-10 39.5 16.6 4.7e-10 39.4 12.7 2.5 1 1 0 2 2 2 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 AAFJ01000010_00026 - 6e-09 35.6 0.0 4.8e-08 32.7 0.0 2.3 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 AAFJ01000010_00026 - 8.1e-06 25.7 0.0 0.0045 16.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain PhoH PF02562.16 AAFJ01000010_00026 - 0.00049 19.6 0.2 0.47 9.9 0.0 2.7 3 0 0 3 3 3 2 PhoH-like protein DUF2075 PF09848.9 AAFJ01000010_00026 - 0.02 14.2 0.3 3.2 6.9 0.0 2.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Peptidase_M6 PF05547.11 AAFJ01000010_00026 - 0.025 12.9 0.1 0.037 12.4 0.1 1.2 1 0 0 1 1 1 0 Immune inhibitor A peptidase M6 Helicase_RecD PF05127.14 AAFJ01000010_00026 - 0.04 13.8 0.7 2 8.2 0.0 2.8 3 0 0 3 3 3 0 Helicase Thioredoxin_7 PF13899.6 AAFJ01000010_00027 - 4.1e-05 23.7 0.0 5.2e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 AAFJ01000010_00027 - 0.00038 20.9 0.4 0.0011 19.4 0.4 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredox_DsbH PF03190.15 AAFJ01000010_00027 - 0.047 13.6 0.2 0.055 13.4 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function, DUF255 TrbC_Ftype PF09673.10 AAFJ01000010_00028 - 2e-16 60.0 0.0 3.5e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 Type-F conjugative transfer system pilin assembly protein DUF1694 PF07997.11 AAFJ01000010_00028 - 0.0015 18.6 0.5 0.0085 16.2 0.5 2.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1694) DUF3502 PF12010.8 AAFJ01000010_00028 - 0.028 15.0 2.0 0.028 15.0 2.0 2.6 1 1 0 2 2 2 0 Domain of unknown function (DUF3502) Thioredoxin PF00085.20 AAFJ01000010_00028 - 0.039 14.0 0.3 0.11 12.5 0.3 1.8 1 0 0 1 1 1 0 Thioredoxin TraU PF06834.11 AAFJ01000010_00029 - 9.6e-97 323.9 0.0 1.1e-96 323.8 0.0 1.0 1 0 0 1 1 1 1 TraU protein RhoGAP PF00620.27 AAFJ01000010_00031 - 0.0012 18.7 1.6 0.0012 18.7 1.6 1.7 2 0 0 2 2 2 1 RhoGAP domain ALP_N PF17989.1 AAFJ01000010_00034 - 7.7e-13 48.9 0.1 1.3e-12 48.1 0.1 1.4 1 0 0 1 1 1 1 Actin like proteins N terminal domain FtsA PF14450.6 AAFJ01000010_00034 - 0.00018 21.9 0.2 0.099 13.1 0.0 2.4 2 1 0 2 2 2 2 Cell division protein FtsA DUF4879 PF16219.5 AAFJ01000010_00035 - 0.0012 19.0 0.2 0.0013 18.9 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4879) YopX PF09643.10 AAFJ01000010_00036 - 3e-12 46.7 2.7 2.3e-11 43.9 1.0 2.2 1 1 1 2 2 2 2 YopX protein DUF4600 PF15372.6 AAFJ01000010_00037 - 0.0093 16.4 0.2 0.011 16.2 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4600) TMF_TATA_bd PF12325.8 AAFJ01000010_00037 - 0.023 14.9 0.1 0.035 14.3 0.1 1.4 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding YopX PF09643.10 AAFJ01000010_00038 - 2.8e-08 33.9 0.6 4e-08 33.4 0.6 1.3 1 1 0 1 1 1 1 YopX protein HTH_17 PF12728.7 AAFJ01000010_00041 - 2.5e-07 30.7 0.0 0.0011 19.1 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_3 PF01381.22 AAFJ01000010_00041 - 1.6e-05 24.8 0.0 0.067 13.3 0.0 2.7 2 0 0 2 2 2 2 Helix-turn-helix HTH_19 PF12844.7 AAFJ01000010_00041 - 6.8e-05 22.8 0.5 0.0032 17.4 0.2 2.7 1 1 1 2 2 2 2 Helix-turn-helix domain MerR PF00376.23 AAFJ01000010_00041 - 0.00015 21.4 0.0 0.27 11.0 0.0 2.3 2 0 0 2 2 2 2 MerR family regulatory protein HTH_26 PF13443.6 AAFJ01000010_00041 - 0.0011 19.4 0.1 0.26 11.8 0.1 2.6 2 1 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain Phage_CI_repr PF07022.13 AAFJ01000010_00041 - 0.0014 18.7 0.0 0.0073 16.4 0.0 2.0 2 0 0 2 2 2 1 Bacteriophage CI repressor helix-turn-helix domain Terminase_5 PF06056.12 AAFJ01000010_00041 - 0.0024 17.7 0.2 0.037 13.9 0.0 2.6 2 1 1 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) HTH_Crp_2 PF13545.6 AAFJ01000010_00041 - 0.0028 17.6 0.0 0.053 13.5 0.0 2.5 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 AAFJ01000010_00041 - 0.0046 16.7 0.0 2.2 8.2 0.0 2.8 3 0 0 3 3 3 1 Homeodomain-like domain MerR_1 PF13411.6 AAFJ01000010_00041 - 0.0086 16.2 0.0 1.1 9.4 0.0 2.6 2 1 0 2 2 2 1 MerR HTH family regulatory protein SL4P PF17618.2 AAFJ01000010_00041 - 0.026 14.6 1.6 4.7 7.3 0.3 2.5 2 1 0 2 2 2 0 Uncharacterized Strongylid L4 protein Vps4_C PF09336.10 AAFJ01000010_00041 - 0.036 14.1 0.0 0.12 12.3 0.0 1.9 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain Phage_terminase PF10668.9 AAFJ01000010_00041 - 0.054 13.5 0.1 11 6.1 0.0 2.5 2 0 0 2 2 2 0 Phage terminase small subunit SNase PF00565.17 AAFJ01000010_00042 - 5.7e-24 84.7 0.4 9.2e-24 84.0 0.4 1.3 1 0 0 1 1 1 1 Staphylococcal nuclease homologue O-antigen_lig PF13425.6 AAFJ01000010_00042 - 0.022 13.6 4.2 0.027 13.3 4.2 1.0 1 0 0 1 1 1 0 O-antigen ligase like membrane protein DUF4065 PF13274.6 AAFJ01000010_00043 - 0.001 19.9 0.8 0.0013 19.6 0.5 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF4065) N6_N4_Mtase PF01555.18 AAFJ01000010_00044 - 3.2e-15 56.5 7.5 1.5e-08 34.6 1.9 3.5 3 1 0 3 3 3 2 DNA methylase UPF0020 PF01170.18 AAFJ01000010_00044 - 4.1e-06 26.6 0.0 0.051 13.3 0.0 2.6 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 AAFJ01000010_00044 - 0.0038 16.9 0.0 0.5 10.0 0.0 2.7 2 0 0 2 2 2 1 Conserved hypothetical protein 95 AviRa PF11599.8 AAFJ01000010_00044 - 0.021 14.3 0.6 0.12 11.8 0.0 2.3 3 0 0 3 3 3 0 RRNA methyltransferase AviRa Stork_head PF10264.9 AAFJ01000010_00044 - 0.049 13.8 0.0 0.13 12.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix Storkhead-box1 domain N6_N4_Mtase PF01555.18 AAFJ01000010_00045 - 9.5e-26 90.9 0.2 2e-14 53.9 0.0 2.1 2 0 0 2 2 2 2 DNA methylase Methyltransf_25 PF13649.6 AAFJ01000010_00045 - 2.4e-08 34.6 0.0 1.7e-07 31.8 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 AAFJ01000010_00045 - 3.1e-08 34.2 0.0 2.9e-05 24.6 0.0 2.3 1 1 1 2 2 2 2 Methyltransferase domain Methyltransf_31 PF13847.6 AAFJ01000010_00045 - 6.3e-08 32.5 0.1 1.2e-07 31.7 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 AAFJ01000010_00045 - 2.1e-06 27.4 0.0 3.2e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.18 AAFJ01000010_00045 - 4.7e-05 23.2 0.1 0.0016 18.1 0.1 2.3 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 AAFJ01000010_00045 - 0.0002 21.0 0.1 0.00089 18.9 0.0 1.9 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 AAFJ01000010_00045 - 0.0027 17.4 0.0 0.0048 16.6 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 N6_Mtase PF02384.16 AAFJ01000010_00045 - 0.0058 15.9 0.0 0.0096 15.2 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_12 PF08242.12 AAFJ01000010_00045 - 0.024 15.4 0.0 0.068 13.9 0.0 1.7 1 1 1 2 2 2 0 Methyltransferase domain Methyltransf_23 PF13489.6 AAFJ01000010_00045 - 0.027 14.3 0.0 0.068 13.0 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain ParE_toxin PF05016.15 AAFJ01000010_00047 - 3.8e-09 37.0 0.2 4.7e-09 36.8 0.2 1.2 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE YafQ_toxin PF15738.5 AAFJ01000010_00047 - 0.0008 19.7 0.2 0.00099 19.4 0.2 1.1 1 0 0 1 1 1 1 Bacterial toxin of type II toxin-antitoxin system, YafQ IKKbetaNEMObind PF12179.8 AAFJ01000010_00047 - 0.09 12.8 0.2 0.16 12.0 0.2 1.4 1 0 0 1 1 1 0 I-kappa-kinase-beta NEMO binding domain RHH_5 PF07878.11 AAFJ01000010_00048 - 0.00016 21.5 0.0 0.00024 20.9 0.0 1.3 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 RHH_3 PF12651.7 AAFJ01000010_00048 - 0.00048 20.0 0.0 0.00088 19.2 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain HicB_lk_antitox PF15919.5 AAFJ01000010_00048 - 0.012 15.7 0.0 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system CcdA PF07362.12 AAFJ01000010_00048 - 0.025 15.0 0.1 0.034 14.6 0.1 1.3 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA Bro-N PF02498.17 AAFJ01000010_00049 - 1.6e-22 80.0 2.7 1.9e-22 79.8 0.0 2.2 2 1 0 2 2 2 1 BRO family, N-terminal domain HTH_3 PF01381.22 AAFJ01000010_00049 - 2e-07 31.0 0.1 6.7e-07 29.3 0.1 2.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 AAFJ01000010_00049 - 4.5e-07 29.8 0.1 4.5e-07 29.8 0.1 3.0 4 0 0 4 4 4 1 Helix-turn-helix domain ZapD PF07072.11 AAFJ01000010_00049 - 0.00027 20.7 3.0 0.014 15.2 0.1 2.7 2 1 0 2 2 2 2 Cell division protein HTH_31 PF13560.6 AAFJ01000010_00049 - 0.0048 17.2 0.0 0.0092 16.3 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain SLT PF01464.20 AAFJ01000010_00050 - 3.1e-22 78.4 0.0 3.6e-22 78.2 0.0 1.1 1 0 0 1 1 1 1 Transglycosylase SLT domain Glucosaminidase PF01832.20 AAFJ01000010_00050 - 0.017 15.6 0.2 0.035 14.6 0.2 1.6 1 1 0 1 1 1 0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Lys PF00062.20 AAFJ01000010_00050 - 0.07 13.4 0.1 0.16 12.2 0.0 1.5 1 1 0 1 1 1 0 C-type lysozyme/alpha-lactalbumin family UPF0146 PF03686.13 AAFJ01000010_00050 - 0.084 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) YafQ_toxin PF15738.5 AAFJ01000010_00052 - 9.3e-26 90.0 0.7 1.1e-25 89.8 0.7 1.0 1 0 0 1 1 1 1 Bacterial toxin of type II toxin-antitoxin system, YafQ DDE_Tnp_1_7 PF13843.6 AAFJ01000010_00053 - 0.0083 15.5 1.0 0.009 15.3 1.0 1.2 1 0 0 1 1 1 1 Transposase IS4 LETM1 PF07766.13 AAFJ01000010_00053 - 0.009 15.4 4.8 0.01 15.2 4.8 1.2 1 0 0 1 1 1 1 LETM1-like protein Baculo_p24 PF05073.12 AAFJ01000010_00053 - 0.035 13.9 2.5 0.038 13.8 2.5 1.0 1 0 0 1 1 1 0 Baculovirus P24 capsid protein PIEZO PF15917.5 AAFJ01000010_00053 - 0.073 12.5 5.7 0.084 12.3 5.7 1.1 1 0 0 1 1 1 0 Piezo Oxidored_q3 PF00499.20 AAFJ01000010_00054 - 0.0036 17.0 0.2 0.0052 16.5 0.2 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TctA PF01970.16 AAFJ01000010_00054 - 0.016 14.0 0.6 0.022 13.5 0.6 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctA family Carbpep_Y_N PF05388.11 AAFJ01000010_00054 - 0.027 15.0 2.7 0.027 15.0 0.8 1.8 1 1 1 2 2 2 0 Carboxypeptidase Y pro-peptide Bacillus_PapR PF05968.11 AAFJ01000010_00055 - 0.022 14.6 0.1 0.048 13.5 0.1 1.6 1 0 0 1 1 1 0 Bacillus PapR protein YtpI PF14007.6 AAFJ01000010_00055 - 0.024 14.8 9.1 0.038 14.1 0.1 2.9 2 1 1 3 3 3 0 YtpI-like protein TraL PF07178.11 AAFJ01000010_00056 - 3.1e-13 50.0 0.5 3.6e-13 49.8 0.5 1.1 1 0 0 1 1 1 1 TraL protein TraE PF05309.11 AAFJ01000010_00057 - 1e-32 113.0 0.8 1.3e-32 112.7 0.8 1.0 1 0 0 1 1 1 1 TraE protein TraK PF06586.11 AAFJ01000010_00058 - 8.9e-23 81.2 0.2 2.6e-22 79.7 0.2 1.6 1 1 0 1 1 1 1 TraK protein TrbI PF03743.14 AAFJ01000010_00059 - 4.8e-35 121.1 1.5 8e-35 120.4 1.5 1.4 1 0 0 1 1 1 1 Bacterial conjugation TrbI-like protein Cep57_CLD PF14073.6 AAFJ01000010_00059 - 0.0019 18.2 4.7 0.0019 18.2 4.7 2.1 2 1 0 2 2 2 1 Centrosome localisation domain of Cep57 O-antigen_lig PF13425.6 AAFJ01000010_00059 - 0.08 11.7 8.5 0.13 11.0 8.5 1.3 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Thioredoxin_2 PF13098.6 AAFJ01000010_00060 - 1.4e-15 57.6 0.2 3.5e-15 56.4 0.1 1.7 2 0 0 2 2 2 1 Thioredoxin-like domain DsbC_N PF10411.9 AAFJ01000010_00060 - 8.2e-10 38.0 0.1 1.5e-09 37.2 0.1 1.4 1 0 0 1 1 1 1 Disulfide bond isomerase protein N-terminus Thioredoxin_4 PF13462.6 AAFJ01000010_00060 - 0.0014 18.8 4.8 0.39 10.9 0.3 2.4 1 1 1 2 2 2 2 Thioredoxin Glutaredoxin PF00462.24 AAFJ01000010_00060 - 0.0033 17.6 0.1 0.01 16.1 0.0 1.9 2 0 0 2 2 2 1 Glutaredoxin TraF PF13728.6 AAFJ01000010_00060 - 0.086 12.7 0.1 6 6.6 0.0 2.2 2 0 0 2 2 2 0 F plasmid transfer operon protein SH3_3 PF08239.11 AAFJ01000010_00061 - 6.2e-06 26.4 0.0 1.4e-05 25.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial SH3 domain TraV PF09676.10 AAFJ01000010_00061 - 0.00078 20.4 1.2 0.00078 20.4 1.2 2.5 2 1 0 2 2 2 1 Type IV conjugative transfer system lipoprotein (TraV) DUF3410 PF11890.8 AAFJ01000010_00061 - 0.083 12.7 0.0 0.21 11.4 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3410) SH3_3 PF08239.11 AAFJ01000010_00062 - 0.00054 20.2 0.1 0.00093 19.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial SH3 domain PBP_dimer PF03717.15 AAFJ01000010_00062 - 0.027 14.8 0.7 0.035 14.4 0.7 1.1 1 0 0 1 1 1 0 Penicillin-binding Protein dimerisation domain Closter_coat PF01785.17 AAFJ01000010_00062 - 0.064 12.5 0.2 0.088 12.1 0.2 1.1 1 0 0 1 1 1 0 Closterovirus coat protein TraC_F_IV PF11130.8 AAFJ01000010_00064 - 5.7e-32 111.2 0.0 2.1e-31 109.4 0.0 1.9 2 0 0 2 2 2 1 F pilus assembly Type-IV secretion system for plasmid transfer AAA_10 PF12846.7 AAFJ01000010_00064 - 1.6e-10 40.5 0.2 9.3e-10 38.0 0.2 2.0 1 1 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.9 AAFJ01000010_00064 - 5.1e-08 32.2 0.0 0.0045 15.9 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 AAFJ01000010_00064 - 0.0013 19.1 0.4 2.3 8.5 0.0 3.2 2 1 0 3 3 3 2 AAA domain ResIII PF04851.15 AAFJ01000010_00064 - 0.0024 17.9 2.1 0.057 13.4 0.2 3.2 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit CbiA PF01656.23 AAFJ01000010_00064 - 0.0056 16.7 0.0 0.015 15.3 0.0 1.7 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zot PF05707.12 AAFJ01000010_00064 - 0.014 15.1 0.0 0.039 13.6 0.0 1.7 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) TraG-D_C PF12696.7 AAFJ01000010_00064 - 0.017 15.1 0.0 0.052 13.5 0.0 1.9 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG RsgA_GTPase PF03193.16 AAFJ01000010_00064 - 0.056 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase DUF1639 PF07797.14 AAFJ01000010_00064 - 0.073 13.1 0.1 4.7 7.3 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1639) TrbI_Ftype PF09677.10 AAFJ01000010_00065 - 0.028 14.7 0.0 0.031 14.6 0.0 1.1 1 0 0 1 1 1 0 Type-F conjugative transfer system protein (TrbI_Ftype) Peptidase_S26 PF10502.9 AAFJ01000010_00066 - 1.6e-15 57.1 0.0 2.2e-15 56.6 0.0 1.1 1 0 0 1 1 1 1 Signal peptidase, peptidase S26 TraH PF06122.11 AAFJ01000010_00067 - 5.3e-64 216.8 0.3 5.3e-64 216.8 0.3 1.6 2 0 0 2 2 2 1 Conjugative relaxosome accessory transposon protein SAYSvFN PF10260.9 AAFJ01000010_00068 - 0.046 13.6 0.2 0.12 12.3 0.2 1.7 1 0 0 1 1 1 0 Uncharacterized conserved domain (SAYSvFN) TraN PF06986.11 AAFJ01000010_00069 - 3.3e-26 92.5 26.5 9.2e-25 87.7 20.4 3.0 2 1 0 2 2 2 1 Type-1V conjugative transfer system mating pair stabilisation Lectin_C PF00059.21 AAFJ01000010_00069 - 1.8e-05 25.4 0.0 1.8e-05 25.4 0.0 2.5 2 0 0 2 2 2 1 Lectin C-type domain Xol-1_GHMP-like PF09109.10 AAFJ01000010_00069 - 0.035 14.0 0.0 0.073 12.9 0.0 1.5 1 0 0 1 1 1 0 Switch protein XOL-1, GHMP-like TraF PF13728.6 AAFJ01000010_00070 - 3.2e-18 66.4 7.8 4.7e-18 65.8 7.8 1.3 1 1 0 1 1 1 1 F plasmid transfer operon protein PUA_2 PF14306.6 AAFJ01000010_00070 - 0.015 15.0 0.3 0.028 14.1 0.3 1.6 1 0 0 1 1 1 0 PUA-like domain TraG_N PF07916.11 AAFJ01000010_00071 - 3.7e-55 187.6 16.8 3.7e-55 187.6 16.8 1.9 2 1 0 2 2 2 1 TraG-like protein, N-terminal region Wzy_C PF04932.15 AAFJ01000010_00073 - 0.086 12.5 0.1 0.096 12.3 0.1 1.1 1 0 0 1 1 1 0 O-Antigen ligase PFO_beta_C PF12367.8 AAFJ01000010_00075 - 0.064 13.4 1.6 0.093 12.9 0.2 2.0 2 0 0 2 2 2 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Phage_Treg PF04761.12 AAFJ01000010_00075 - 0.085 13.0 1.7 0.33 11.1 0.0 2.7 3 0 0 3 3 3 0 Lactococcus bacteriophage putative transcription regulator AAA_25 PF13481.6 AAFJ01000010_00076 - 1.7e-18 66.9 0.0 2.2e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain PhoH PF02562.16 AAFJ01000010_00076 - 0.00097 18.6 0.0 0.0017 17.8 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein DnaB_C PF03796.15 AAFJ01000010_00076 - 0.0021 17.5 0.0 0.0027 17.1 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain ATPase PF06745.13 AAFJ01000010_00076 - 0.041 13.2 0.0 0.049 13.0 0.0 1.2 1 0 0 1 1 1 0 KaiC IstB_IS21 PF01695.17 AAFJ01000010_00076 - 0.045 13.5 0.0 0.13 12.0 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein HTH_3 PF01381.22 AAFJ01000010_00077 - 1.2e-06 28.5 0.0 1.9e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 AAFJ01000010_00077 - 1.2e-05 25.2 0.7 1.7e-05 24.8 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain TACC_C PF05010.14 AAFJ01000010_00077 - 0.013 15.2 0.1 0.016 15.0 0.1 1.1 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Toprim_3 PF13362.6 AAFJ01000010_00078 - 5.2e-09 36.3 0.0 8.2e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 AAFJ01000010_00078 - 0.017 15.6 0.1 0.035 14.6 0.1 1.5 1 0 0 1 1 1 0 Toprim domain AAA_25 PF13481.6 AAFJ01000010_00079 - 1e-15 57.8 0.0 2e-15 56.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 AAFJ01000010_00079 - 0.0004 19.8 0.0 0.0041 16.5 0.0 2.1 1 1 1 2 2 2 2 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 AAFJ01000010_00079 - 0.0014 18.3 0.0 0.018 14.7 0.0 2.4 2 0 0 2 2 2 1 IstB-like ATP binding protein ATPase PF06745.13 AAFJ01000010_00079 - 0.013 14.8 0.0 0.049 13.0 0.0 2.1 2 1 0 2 2 2 0 KaiC AAA PF00004.29 AAFJ01000010_00079 - 0.07 13.6 0.1 0.91 10.0 0.0 2.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SseC PF04888.12 AAFJ01000010_00080 - 0.0012 18.6 1.4 0.0012 18.6 1.4 1.8 2 0 0 2 2 2 1 Secretion system effector C (SseC) like family Leu_Phe_trans PF03588.14 AAFJ01000010_00080 - 0.034 13.7 0.1 0.048 13.2 0.1 1.2 1 0 0 1 1 1 0 Leucyl/phenylalanyl-tRNA protein transferase Resolvase PF00239.21 AAFJ01000010_00081 - 9.9e-36 123.0 0.2 1.4e-35 122.5 0.2 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain Mga PF05043.13 AAFJ01000010_00081 - 0.012 16.1 2.2 0.15 12.7 0.6 2.5 2 0 0 2 2 2 0 Mga helix-turn-helix domain TrbC PF04956.13 AAFJ01000010_00082 - 4.8e-15 55.6 8.1 5.6e-15 55.4 8.1 1.0 1 0 0 1 1 1 1 TrbC/VIRB2 family CagE_TrbE_VirB PF03135.14 AAFJ01000010_00083 - 2.5e-43 148.6 0.5 6.2e-43 147.3 0.5 1.7 1 0 0 1 1 1 1 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 AAFJ01000010_00083 - 1.2e-19 70.3 2.0 2.1e-19 69.5 2.0 1.4 1 0 0 1 1 1 1 Type IV secretory pathway, VirB3-like protein Phage_pRha PF09669.10 AAFJ01000010_00084 - 2.7e-29 101.5 0.0 4.5e-29 100.8 0.0 1.4 1 0 0 1 1 1 1 Phage regulatory protein Rha (Phage_pRha) T4SS PF07996.11 AAFJ01000010_00085 - 2.3e-23 83.6 16.9 2.8e-23 83.4 16.9 1.1 1 0 0 1 1 1 1 Type IV secretion system proteins CHASE4 PF05228.13 AAFJ01000010_00085 - 0.05 13.8 5.7 1 9.6 0.2 2.9 2 1 1 3 3 3 0 CHASE4 domain KMP11 PF03037.16 AAFJ01000010_00085 - 0.074 13.8 2.3 0.31 11.8 0.0 2.9 1 1 3 4 4 4 0 Kinetoplastid membrane protein 11 AChE_tetra PF08674.10 AAFJ01000010_00085 - 0.099 12.4 1.2 0.5 10.1 0.1 2.2 2 0 0 2 2 2 0 Acetylcholinesterase tetramerisation domain TrbL PF04610.14 AAFJ01000010_00086 - 5.9e-33 114.4 25.5 8.1e-33 114.0 25.5 1.3 1 0 0 1 1 1 1 TrbL/VirB6 plasmid conjugal transfer protein VirB8 PF04335.13 AAFJ01000010_00089 - 8.4e-50 169.6 0.1 1e-49 169.3 0.1 1.0 1 0 0 1 1 1 1 VirB8 protein CagX PF03524.15 AAFJ01000010_00090 - 2.3e-53 181.1 0.8 4.6e-53 180.1 0.8 1.5 1 1 0 1 1 1 1 Conjugal transfer protein TrbI PF03743.14 AAFJ01000010_00091 - 1.3e-46 158.8 0.1 1.3e-46 158.8 0.1 1.6 2 0 0 2 2 2 1 Bacterial conjugation TrbI-like protein T2SSE PF00437.20 AAFJ01000010_00093 - 5.1e-54 183.2 0.0 6.4e-54 182.8 0.0 1.0 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.6 AAFJ01000010_00093 - 4.9e-05 23.6 0.0 9.4e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 AAFJ01000010_00093 - 0.00012 22.6 0.0 0.00029 21.4 0.0 1.6 1 0 0 1 1 1 1 ABC transporter FtsK_SpoIIIE PF01580.18 AAFJ01000010_00093 - 0.00021 20.7 0.0 0.00034 20.0 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_7 PF12775.7 AAFJ01000010_00093 - 0.00062 19.3 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_23 PF13476.6 AAFJ01000010_00093 - 0.0028 18.2 1.3 0.0028 18.2 1.3 1.9 1 1 1 2 2 2 1 AAA domain TsaE PF02367.17 AAFJ01000010_00093 - 0.003 17.5 0.0 0.0064 16.5 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Pox_A32 PF04665.12 AAFJ01000010_00093 - 0.003 17.0 0.0 0.0048 16.4 0.0 1.3 1 0 0 1 1 1 1 Poxvirus A32 protein AAA_15 PF13175.6 AAFJ01000010_00093 - 0.0035 17.1 2.5 0.0035 17.1 2.5 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_24 PF13479.6 AAFJ01000010_00093 - 0.0041 16.9 0.0 0.0069 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain Septin PF00735.18 AAFJ01000010_00093 - 0.0043 16.4 0.0 0.0072 15.6 0.0 1.3 1 0 0 1 1 1 1 Septin RNA_helicase PF00910.22 AAFJ01000010_00093 - 0.012 16.0 0.0 0.043 14.2 0.0 2.0 2 0 0 2 2 1 0 RNA helicase ATPase_2 PF01637.18 AAFJ01000010_00093 - 0.013 15.4 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 AAFJ01000010_00093 - 0.015 15.2 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_29 PF13555.6 AAFJ01000010_00093 - 0.015 15.0 0.0 0.035 13.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.17 AAFJ01000010_00093 - 0.015 15.4 1.0 0.03 14.4 0.2 1.9 1 1 1 2 2 2 0 Helicase HerA, central domain DUF815 PF05673.13 AAFJ01000010_00093 - 0.021 14.0 0.0 0.031 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DEAD PF00270.29 AAFJ01000010_00093 - 0.021 14.6 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 DEAD/DEAH box helicase Mg_chelatase PF01078.21 AAFJ01000010_00093 - 0.023 14.1 0.0 0.1 11.9 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ATP_bind_1 PF03029.17 AAFJ01000010_00093 - 0.027 14.3 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 AAFJ01000010_00093 - 0.045 13.7 0.0 0.072 13.0 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase TrwB_AAD_bind PF10412.9 AAFJ01000010_00093 - 0.046 12.6 0.0 0.079 11.8 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Dynamin_N PF00350.23 AAFJ01000010_00093 - 0.051 13.6 0.0 0.4 10.7 0.0 2.2 2 0 0 2 2 2 0 Dynamin family ResIII PF04851.15 AAFJ01000010_00093 - 0.055 13.5 0.1 0.12 12.4 0.1 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit SMC_N PF02463.19 AAFJ01000010_00093 - 0.063 12.7 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain PduV-EutP PF10662.9 AAFJ01000010_00093 - 0.07 12.9 0.0 0.7 9.6 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 AAFJ01000010_00093 - 0.073 13.6 0.0 0.14 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 AAFJ01000010_00093 - 0.089 12.5 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MobB PF03205.14 AAFJ01000010_00093 - 0.09 12.7 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.6 AAFJ01000010_00093 - 0.091 12.8 0.3 0.21 11.6 0.0 1.8 2 0 0 2 2 1 0 AAA domain GvpD PF07088.11 AAFJ01000010_00093 - 0.093 11.3 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 GvpD gas vesicle protein YscJ_FliF PF01514.17 AAFJ01000010_00094 - 0.019 14.7 2.6 0.31 10.7 0.1 2.4 2 0 0 2 2 2 0 Secretory protein of YscJ/FliF family Njmu-R1 PF15053.6 AAFJ01000010_00094 - 0.028 13.5 1.6 0.051 12.7 1.6 1.4 1 0 0 1 1 1 0 Mjmu-R1-like protein family T4SS-DNA_transf PF02534.14 AAFJ01000010_00095 - 1.3e-109 367.1 0.0 1.8e-109 366.7 0.0 1.1 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 AAFJ01000010_00095 - 6.2e-27 94.1 0.0 1.1e-26 93.3 0.0 1.4 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 AAFJ01000010_00095 - 1.4e-18 67.0 0.0 3.3e-13 49.3 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain Cag12 PF13117.6 AAFJ01000010_00096 - 1.1e-16 61.2 0.1 1.4e-16 60.7 0.1 1.1 1 0 0 1 1 1 1 Cag pathogenicity island protein Cag12 LPAM_2 PF13627.6 AAFJ01000010_00096 - 0.027 14.3 3.2 0.044 13.6 3.2 1.4 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site TrbM PF07424.11 AAFJ01000010_00097 - 6.3e-39 133.4 1.3 8e-39 133.1 1.3 1.1 1 0 0 1 1 1 1 TrbM Latarcin PF10279.9 AAFJ01000010_00098 - 0.016 15.6 1.6 0.66 10.4 1.6 3.5 1 1 0 1 1 1 0 Latarcin precursor Lipase_GDSL PF00657.22 AAFJ01000010_00098 - 0.033 14.2 1.1 0.067 13.2 0.9 1.6 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase T3SS_basalb_I PF17001.5 AAFJ01000010_00098 - 0.078 13.6 4.2 1.7 9.3 0.5 2.8 2 1 0 2 2 2 0 Type III secretion basal body protein I, YscI, HrpB, PscI Topoisom_bac PF01131.20 AAFJ01000010_00100 - 4.4e-96 322.4 2.6 5.6e-96 322.1 2.6 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 AAFJ01000010_00100 - 8.4e-12 45.2 0.4 3.4e-11 43.3 0.1 2.3 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.19 AAFJ01000010_00100 - 1.2e-07 31.3 19.1 0.00081 19.1 3.8 2.5 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 AAFJ01000010_00100 - 0.00043 20.5 0.2 0.69 10.2 0.0 2.5 2 0 0 2 2 2 2 zinc-ribbon Zn_ribbon_SprT PF17283.2 AAFJ01000010_00100 - 0.014 15.3 1.1 0.11 12.4 0.2 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Toprim_2 PF13155.6 AAFJ01000010_00100 - 0.036 14.5 0.3 0.79 10.2 0.1 2.6 2 0 0 2 2 2 0 Toprim-like HTH_34 PF13601.6 AAFJ01000010_00100 - 0.074 13.2 0.5 0.77 10.0 0.1 2.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain Zn-ribbon_8 PF09723.10 AAFJ01000010_00100 - 0.077 13.1 0.7 11 6.2 0.1 2.6 2 0 0 2 2 2 0 Zinc ribbon domain TetR_C_5 PF08360.11 AAFJ01000010_00102 - 0.012 15.8 4.6 0.013 15.7 4.6 1.0 1 0 0 1 1 1 0 QacR-like protein, C-terminal region YopX PF09643.10 AAFJ01000010_00103 - 2.1e-13 50.5 2.2 3.4e-13 49.8 2.2 1.4 1 0 0 1 1 1 1 YopX protein YopX PF09643.10 AAFJ01000010_00104 - 1.7e-05 24.9 0.1 2e-05 24.7 0.1 1.4 1 0 0 1 1 1 1 YopX protein TAFII28 PF04719.14 AAFJ01000010_00104 - 0.072 13.2 0.0 5.9 7.1 0.0 2.3 1 1 1 2 2 2 0 hTAFII28-like protein conserved region CRISPR_Cas2 PF09827.9 AAFJ01000010_00106 - 0.00069 19.7 1.5 0.0022 18.1 0.0 2.3 1 1 1 2 2 2 1 CRISPR associated protein Cas2 RRM_1 PF00076.22 AAFJ01000010_00106 - 0.0021 17.8 0.5 0.0083 15.9 0.1 2.1 2 0 0 2 2 2 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LPD11 PF18824.1 AAFJ01000010_00106 - 0.086 12.9 1.8 0.17 12.0 0.4 2.2 3 0 0 3 3 3 0 Large polyvalent protein-associated domain 11 AAA_31 PF13614.6 AAFJ01000010_00107 - 1.6e-11 44.5 4.7 1.8e-10 41.1 4.7 2.6 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 AAFJ01000010_00107 - 3e-11 43.1 1.8 3.3e-06 26.6 1.0 3.1 1 1 1 2 2 2 2 ATPase MipZ CbiA PF01656.23 AAFJ01000010_00107 - 4.3e-09 36.5 0.1 6.4e-09 35.9 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 AAFJ01000010_00107 - 0.00013 21.3 0.3 0.00081 18.7 0.0 2.1 2 1 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 AAFJ01000010_00107 - 0.0012 18.2 0.1 0.91 8.8 0.0 2.1 2 0 0 2 2 2 2 VirC1 protein ABC2_membrane_3 PF12698.7 AAFJ01000010_00107 - 0.0018 17.4 0.8 0.002 17.3 0.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein AAA_24 PF13479.6 AAFJ01000010_00107 - 0.0038 17.0 1.2 0.0061 16.3 0.1 1.7 2 1 0 2 2 2 1 AAA domain ParA PF10609.9 AAFJ01000010_00107 - 0.004 16.6 0.0 0.0072 15.8 0.0 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ATP_bind_1 PF03029.17 AAFJ01000010_00107 - 0.019 14.8 0.1 0.066 13.0 0.0 1.9 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein SNF2_N PF00176.23 AAFJ01000010_00109 - 3.6e-15 55.6 0.1 1.1e-14 53.9 0.1 1.7 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.31 AAFJ01000010_00109 - 1.5e-09 38.2 7.1 2.8e-09 37.3 0.0 4.6 4 0 0 4 4 4 1 Helicase conserved C-terminal domain ResIII PF04851.15 AAFJ01000010_00109 - 2.6e-08 34.1 3.3 2.6e-08 34.1 3.3 5.4 5 1 0 6 6 6 1 Type III restriction enzyme, res subunit Eco57I PF07669.11 AAFJ01000010_00109 - 2.1e-06 28.2 1.2 2.6e-05 24.7 0.1 3.7 3 0 0 3 3 3 1 Eco57I restriction-modification methylase DEAD PF00270.29 AAFJ01000010_00109 - 0.00053 19.8 2.9 0.006 16.4 1.4 3.3 3 1 0 3 3 3 1 DEAD/DEAH box helicase MTS PF05175.14 AAFJ01000010_00109 - 0.0033 17.0 0.0 0.015 14.9 0.0 2.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 AAFJ01000010_00109 - 0.056 13.3 0.0 0.25 11.2 0.0 2.2 1 0 0 1 1 1 0 Methyltransferase domain Fic PF02661.18 AAFJ01000010_00112 - 0.025 15.5 0.0 0.055 14.4 0.0 1.6 2 0 0 2 2 2 0 Fic/DOC family Adenyl_cycl_N PF12633.7 AAFJ01000010_00112 - 0.086 12.7 0.1 0.16 11.8 0.1 1.4 1 0 0 1 1 1 0 Adenylate cyclase NT domain CRISPR_Cas2 PF09827.9 AAFJ01000010_00114 - 1e-05 25.6 2.4 1.6e-05 24.9 0.0 2.1 2 0 0 2 2 2 1 CRISPR associated protein Cas2 GIT_CC PF16559.5 AAFJ01000010_00114 - 0.014 15.2 5.0 0.023 14.6 5.0 1.3 1 0 0 1 1 1 0 GIT coiled-coil Rho guanine nucleotide exchange factor ABC_tran_Xtn PF12848.7 AAFJ01000010_00114 - 0.014 15.4 2.7 0.024 14.7 2.7 1.4 1 0 0 1 1 1 0 ABC transporter DUF5595 PF18077.1 AAFJ01000010_00114 - 0.039 14.0 3.6 0.08 13.0 3.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5595) DUF1722 PF08349.11 AAFJ01000010_00114 - 0.047 14.0 2.6 6.2 7.1 2.0 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF1722) DUF2600 PF10776.9 AAFJ01000010_00115 - 0.0034 16.3 0.5 0.0044 15.9 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2600) DUF2070 PF09843.9 AAFJ01000010_00115 - 0.0043 15.4 8.7 0.0049 15.2 8.7 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) COX7a PF02238.15 AAFJ01000010_00115 - 0.0096 16.3 1.7 0.76 10.2 0.1 2.6 2 0 0 2 2 2 1 Cytochrome c oxidase subunit VII HlyIII PF03006.20 AAFJ01000010_00115 - 0.013 15.3 7.6 0.015 15.1 7.6 1.0 1 0 0 1 1 1 0 Haemolysin-III related DUF1129 PF06570.11 AAFJ01000010_00115 - 0.022 14.3 8.0 0.027 13.9 3.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) DUF1772 PF08592.11 AAFJ01000010_00115 - 0.027 14.8 3.3 0.033 14.5 2.3 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) DUF2663 PF10864.8 AAFJ01000010_00115 - 0.076 13.4 14.4 0.53 10.7 5.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2663) DUF898 PF05987.13 AAFJ01000010_00115 - 0.079 12.0 6.5 0.57 9.2 2.6 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF898) Relaxase PF03432.14 AAFJ01000010_00116 - 2e-07 30.9 0.8 2e-07 30.9 0.8 3.0 2 1 1 3 3 3 1 Relaxase/Mobilisation nuclease domain RHH_7 PF16777.5 AAFJ01000010_00117 - 0.085 13.3 6.7 0.32 11.4 2.9 2.5 1 1 1 2 2 2 0 Transcriptional regulator, RHH-like, CopG Fic PF02661.18 AAFJ01000017_00001 - 1.7e-17 64.0 0.1 4.6e-17 62.7 0.0 1.7 2 0 0 2 2 2 1 Fic/DOC family Toprim_3 PF13362.6 AAFJ01000017_00002 - 5.2e-09 36.3 0.0 8.2e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 AAFJ01000017_00002 - 0.017 15.6 0.1 0.035 14.6 0.1 1.5 1 0 0 1 1 1 0 Toprim domain SSB PF00436.25 AAFJ01000017_00005 - 1.4e-29 102.2 0.8 2.1e-29 101.6 0.8 1.2 1 0 0 1 1 1 1 Single-strand binding protein family tRNA_anti-codon PF01336.25 AAFJ01000017_00005 - 0.00012 22.0 0.1 0.00017 21.5 0.1 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF1640 PF07798.11 AAFJ01000017_00008 - 0.0011 19.0 0.7 0.0014 18.7 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1640) Merozoite_SPAM PF07133.11 AAFJ01000017_00008 - 0.0095 16.0 4.1 0.012 15.6 4.1 1.1 1 0 0 1 1 1 1 Merozoite surface protein (SPAM) RecT PF03837.14 AAFJ01000017_00009 - 2.3e-36 125.2 0.1 4e-36 124.4 0.0 1.3 1 1 0 1 1 1 1 RecT family DUF2624 PF11116.8 AAFJ01000017_00015 - 0.041 14.8 0.1 0.084 13.8 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2624) DUF4883 PF16224.5 AAFJ01000017_00015 - 0.075 13.3 2.6 0.094 13.0 2.6 1.1 1 0 0 1 1 1 0 DOmain of unknown function (DUF4883) DUF2031 PF09592.10 AAFJ01000017_00019 - 0.013 15.0 5.3 0.013 15.1 5.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2031) RNA_pol_Rpb2_45 PF10385.9 AAFJ01000017_00019 - 0.1 12.9 0.4 0.13 12.6 0.4 1.3 1 0 0 1 1 1 0 RNA polymerase beta subunit external 1 domain DUF4830 PF16112.5 AAFJ01000017_00020 - 0.0075 16.7 0.1 0.0094 16.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4830) ParE_toxin PF05016.15 AAFJ01000017_00020 - 0.07 13.7 0.0 0.094 13.3 0.0 1.2 1 0 0 1 1 1 0 ParE toxin of type II toxin-antitoxin system, parDE PDDEXK_1 PF12705.7 AAFJ01000017_00022 - 1.5e-05 25.0 0.0 2.8e-05 24.2 0.0 1.5 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 AAFJ01000017_00022 - 4.4e-05 23.6 1.4 4.9e-05 23.5 0.1 1.7 2 0 0 2 2 2 1 Domain of unknown function DUF83 MapZ_C2 PF18708.1 AAFJ01000017_00022 - 0.021 15.1 0.1 0.081 13.2 0.0 2.0 2 0 0 2 2 2 0 MapZ extracellular C-terminal domain 2 NERD PF08378.11 AAFJ01000017_00022 - 0.072 13.6 0.1 0.17 12.4 0.1 1.8 1 1 0 1 1 1 0 Nuclease-related domain G-gamma PF00631.22 AAFJ01000017_00023 - 0.045 13.8 0.6 0.11 12.5 0.6 1.7 1 0 0 1 1 1 0 GGL domain YycI PF09648.10 AAFJ01000017_00024 - 0.011 15.3 0.6 0.011 15.3 0.6 1.1 1 0 0 1 1 1 0 YycH protein Mad3_BUB1_I PF08311.12 AAFJ01000017_00024 - 0.023 14.7 1.0 0.027 14.5 1.0 1.1 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 Rsbr_N PF08678.10 AAFJ01000017_00024 - 0.049 13.7 0.1 1.2 9.2 0.0 2.0 1 1 1 2 2 2 0 Rsbr N terminal DUF4450 PF14614.6 AAFL01000016_00001 - 0.0036 16.9 0.7 0.0056 16.3 0.1 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4450) VanW PF04294.13 AAFL01000016_00001 - 0.013 15.2 0.3 0.045 13.4 0.1 1.8 1 1 0 2 2 2 0 VanW like protein SBDS PF01172.18 AAFL01000016_00001 - 0.089 12.9 4.1 0.17 12.0 2.2 2.3 1 1 1 2 2 2 0 Shwachman-Bodian-Diamond syndrome (SBDS) protein Phage_lysozyme PF00959.19 AAFL01000016_00002 - 1.2e-10 41.7 1.2 2e-10 41.1 0.1 1.9 2 0 0 2 2 2 1 Phage lysozyme SseC PF04888.12 AAFL01000016_00004 - 0.0049 16.5 0.2 0.014 15.1 0.2 1.7 1 0 0 1 1 1 1 Secretion system effector C (SseC) like family ThrE PF06738.12 AAFL01000016_00004 - 0.014 14.8 0.8 0.035 13.5 0.8 1.6 1 0 0 1 1 1 0 Putative threonine/serine exporter Hormone_2 PF00123.20 AAFL01000016_00004 - 0.036 14.0 0.1 0.16 11.9 0.1 2.3 1 0 0 1 1 1 0 Peptide hormone APOBEC_C PF05240.14 AAFL01000016_00004 - 0.061 13.3 0.4 0.31 11.0 0.4 2.3 1 0 0 1 1 1 0 APOBEC-like C-terminal domain UvrA_DNA-bind PF17755.1 AAFL01000016_00005 - 0.012 15.9 0.3 5.1 7.5 0.1 2.5 2 0 0 2 2 2 0 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 AAFL01000016_00007 - 0.0051 17.1 0.3 3.2 8.1 0.0 2.8 3 0 0 3 3 3 2 UvrA DNA-binding domain Glyco_tranf_2_5 PF13712.6 AAFL01000016_00008 - 0.00068 19.4 3.8 0.0013 18.5 3.8 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family TraG_N PF07916.11 AAFL01000016_00009 - 3e-39 135.2 20.8 3e-39 135.2 20.8 3.2 3 1 0 3 3 3 1 TraG-like protein, N-terminal region DUF4131 PF13567.6 AAFL01000016_00010 - 0.0008 19.1 0.1 0.001 18.8 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) DUF981 PF06168.11 AAFL01000016_00010 - 0.015 15.2 3.3 0.019 14.9 3.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF981) Wzy_C PF04932.15 AAFL01000016_00010 - 0.056 13.1 1.3 0.064 12.9 1.3 1.1 1 0 0 1 1 1 0 O-Antigen ligase YafQ_toxin PF15738.5 AAFL01000016_00011 - 8.9e-29 99.7 1.1 9.7e-29 99.5 1.1 1.0 1 0 0 1 1 1 1 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 AAFL01000016_00013 - 1.1e-07 32.4 0.1 1.2e-07 32.3 0.1 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE HicB_lk_antitox PF15919.5 AAFL01000016_00015 - 8.3e-09 35.6 0.3 0.00035 20.7 0.1 2.1 1 1 1 2 2 2 2 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 AAFL01000016_00016 - 1.8e-06 27.9 0.0 3.8e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, DUF5309 PF17236.2 AAFL01000016_00017 - 3e-05 23.5 0.5 3.3e-05 23.4 0.5 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5309) SGT1 PF07093.11 AAFL01000016_00019 - 0.046 12.2 2.7 0.045 12.2 2.7 1.0 1 0 0 1 1 1 0 SGT1 protein PG_binding_4 PF12229.8 AAFL01000016_00019 - 0.057 13.7 1.0 0.065 13.5 1.0 1.2 1 0 0 1 1 1 0 Putative peptidoglycan binding domain DUF2175 PF09943.9 AAFL01000016_00019 - 0.077 13.3 1.2 0.082 13.2 1.2 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) DUF4795 PF16043.5 AAFL01000016_00020 - 0.026 14.1 0.1 0.043 13.4 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) DUF3825 PF12873.7 AAFL01000016_00021 - 1.9e-28 99.6 0.3 3e-28 98.9 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3825) GAGBD PF16828.5 AAFL01000016_00022 - 0.011 15.8 1.4 0.012 15.7 1.4 1.0 1 0 0 1 1 1 0 GAG-binding domain on surface antigen IMS_C PF11799.8 AAFL01000016_00025 - 1.1e-12 48.7 0.0 1.9e-12 48.0 0.0 1.3 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 AAFL01000016_00025 - 0.0002 21.5 0.0 0.00067 19.8 0.1 1.9 2 0 0 2 2 2 1 IMS family HHH motif AAA_25 PF13481.6 AAFL01000016_00026 - 4.9e-30 104.5 0.0 8.9e-30 103.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain Toprim_2 PF13155.6 AAFL01000016_00026 - 6.6e-18 64.9 0.0 2.5e-17 63.1 0.0 2.0 2 0 0 2 2 2 1 Toprim-like DUF3991 PF13154.6 AAFL01000016_00026 - 3.3e-14 53.0 0.0 1.7e-13 50.7 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3991) DnaB_C PF03796.15 AAFL01000016_00026 - 8.6e-09 35.1 0.0 4.9e-05 22.8 0.0 2.3 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain Toprim_3 PF13362.6 AAFL01000016_00026 - 1.8e-08 34.6 0.2 4.4e-07 30.2 0.0 2.5 2 0 0 2 2 2 1 Toprim domain ATPase PF06745.13 AAFL01000016_00026 - 7.2e-06 25.5 0.1 0.0002 20.8 0.0 2.5 1 1 0 1 1 1 1 KaiC AAA_22 PF13401.6 AAFL01000016_00026 - 0.0002 21.6 0.0 0.00058 20.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 AAFL01000016_00026 - 0.0033 17.4 0.0 0.027 14.4 0.0 2.5 2 0 0 2 2 2 1 NACHT domain Toprim_4 PF13662.6 AAFL01000016_00026 - 0.0078 16.7 0.0 0.026 15.0 0.0 1.9 1 0 0 1 1 1 1 Toprim domain AAA_5 PF07728.14 AAFL01000016_00026 - 0.018 15.0 0.0 0.063 13.3 0.0 2.0 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Rad51 PF08423.11 AAFL01000016_00026 - 0.05 12.8 0.0 0.54 9.5 0.0 2.2 1 1 0 1 1 1 0 Rad51 Toprim PF01751.22 AAFL01000016_00026 - 0.051 13.8 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Toprim domain AAA_11 PF13086.6 AAFL01000016_00026 - 0.065 13.0 0.0 1 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain MobA_MobL PF03389.15 AAFL01000016_00027 - 3.7e-79 265.5 0.0 1.4e-78 263.6 0.0 1.9 2 0 0 2 2 2 1 MobA/MobL family Spectrin PF00435.21 AAFL01000016_00027 - 0.015 15.8 2.4 0.18 12.3 0.2 2.9 2 1 0 2 2 2 0 Spectrin repeat Prominin PF05478.11 AAFL01000016_00027 - 0.02 12.9 1.9 0.029 12.4 1.9 1.2 1 0 0 1 1 1 0 Prominin Snapin_Pallidin PF14712.6 AAFL01000016_00027 - 0.021 15.2 2.0 0.059 13.8 0.3 2.4 2 0 0 2 2 2 0 Snapin/Pallidin DUF2408 PF10303.9 AAFL01000016_00027 - 0.032 14.8 2.4 0.06 13.9 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2408) Tup_N PF08581.10 AAFL01000016_00027 - 0.065 13.5 2.3 6.6 7.1 0.3 3.5 4 0 0 4 4 4 0 Tup N-terminal DUF3847 PF12958.7 AAFL01000016_00028 - 1.8e-31 108.1 8.2 2.6e-31 107.6 8.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3847) CENP-Q PF13094.6 AAFL01000016_00028 - 0.034 14.3 11.9 0.044 14.0 11.9 1.4 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit TPR_8 PF13181.6 AAFL01000016_00028 - 0.078 13.2 0.1 0.2 12.0 0.1 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat CPT PF07931.12 AAFL01000016_00029 - 4e-06 26.8 0.0 4.9e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 AAFL01000016_00029 - 9.4e-06 26.2 0.0 1.2e-05 25.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AAFL01000016_00029 - 0.00063 19.9 0.0 0.0008 19.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain MKT1_N PF12247.8 AAFL01000016_00029 - 0.027 14.8 0.0 0.063 13.6 0.0 1.9 1 1 0 1 1 1 0 Temperature dependent protein affecting M2 dsRNA replication Fructosamin_kin PF03881.14 AAFL01000016_00030 - 0.097 11.9 0.0 0.097 11.9 0.0 1.1 1 0 0 1 1 1 0 Fructosamine kinase Ank_3 PF13606.6 AAFL01000019_00001 - 9.9e-11 40.9 0.3 0.002 18.5 0.0 4.7 4 0 0 4 4 4 2 Ankyrin repeat Ank_2 PF12796.7 AAFL01000019_00001 - 1.5e-08 35.1 0.1 1.1e-07 32.3 0.0 2.3 2 1 0 2 2 2 1 Ankyrin repeats (3 copies) Ank_4 PF13637.6 AAFL01000019_00001 - 4.2e-06 27.2 0.1 0.0016 19.0 0.0 3.1 3 0 0 3 3 3 1 Ankyrin repeats (many copies) Ank PF00023.30 AAFL01000019_00001 - 0.00044 20.6 0.0 15 6.2 0.0 3.5 3 0 0 3 3 3 2 Ankyrin repeat Ank_5 PF13857.6 AAFL01000019_00001 - 0.066 13.5 0.0 22 5.5 0.0 3.3 2 1 1 3 3 3 0 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 AAFL01000019_00002 - 2.8e-07 30.8 0.0 2.8e-07 30.8 0.0 3.5 3 1 1 4 4 4 1 Restriction endonuclease fold toxin 7 VRR_NUC PF08774.11 AAFL01000019_00002 - 0.027 14.6 0.0 0.093 12.8 0.0 2.0 1 0 0 1 1 1 0 VRR-NUC domain Ank_3 PF13606.6 AAFL01000019_00003 - 1.4e-10 40.5 0.2 0.0029 18.0 0.0 4.8 4 0 0 4 4 4 2 Ankyrin repeat Ank_2 PF12796.7 AAFL01000019_00003 - 8.2e-09 35.9 0.0 5.5e-08 33.3 0.0 2.2 2 0 0 2 2 2 1 Ankyrin repeats (3 copies) Ank_4 PF13637.6 AAFL01000019_00003 - 1.1e-05 25.9 0.1 0.001 19.6 0.0 3.1 3 0 0 3 3 3 1 Ankyrin repeats (many copies) Ank PF00023.30 AAFL01000019_00003 - 5.2e-05 23.5 0.0 1.7 9.2 0.0 3.6 3 0 0 3 3 3 2 Ankyrin repeat Ank_5 PF13857.6 AAFL01000019_00003 - 0.028 14.8 0.1 1.4 9.4 0.0 3.4 3 1 1 4 4 4 0 Ankyrin repeats (many copies) Phage_GPD PF05954.11 AAFL01000019_00004 - 1.1e-17 64.3 0.0 1.8e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 Phage late control gene D protein (GPD) DUF2345 PF10106.9 AAFL01000019_00004 - 0.01 15.7 1.7 0.029 14.2 1.7 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2345) Gp5_C PF06715.12 AAFL01000019_00004 - 0.013 15.6 4.6 0.19 11.9 0.1 4.1 2 1 2 4 4 4 0 Gp5 C-terminal repeat (3 copies) T6SS_TssG PF06996.11 AAFL01000019_00005 - 1.9e-47 161.9 0.0 2.2e-47 161.8 0.0 1.0 1 0 0 1 1 1 1 Type VI secretion, TssG T6SS_TssF PF05947.12 AAFL01000019_00006 - 2.3e-110 369.9 0.0 2.6e-110 369.8 0.0 1.0 1 0 0 1 1 1 1 Type VI secretion system, TssF GPW_gp25 PF04965.14 AAFL01000019_00007 - 1.2e-09 37.8 0.0 1.5e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Gene 25-like lysozyme Dynactin_p22 PF07426.11 AAFL01000019_00007 - 0.0076 16.1 0.3 0.0097 15.8 0.3 1.2 1 0 0 1 1 1 1 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 AAFL01000019_00007 - 0.051 13.0 0.1 0.12 11.8 0.1 1.7 1 1 1 2 2 2 0 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 AAFL01000019_00008 - 1e-169 564.9 0.0 1.2e-169 564.6 0.0 1.0 1 0 0 1 1 1 1 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 AAFL01000019_00008 - 0.096 12.7 0.8 18 5.4 0.0 3.1 3 0 0 3 3 3 0 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 AAFL01000019_00009 - 1.2e-51 174.6 3.8 1.3e-51 174.4 3.8 1.0 1 0 0 1 1 1 1 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 AAFL01000019_00009 - 0.082 11.5 0.0 0.099 11.2 0.0 1.1 1 0 0 1 1 1 0 Chitin synthase T6SS_VasJ PF16989.5 AAFL01000019_00010 - 1.2e-12 47.9 0.0 1.7e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 AAFL01000019_00010 - 0.00014 22.0 0.2 0.0008 19.5 0.1 2.0 2 0 0 2 2 2 1 ImpA, N-terminal, type VI secretion system PX PF00787.24 AAFL01000019_00010 - 0.074 13.0 14.5 1.1 9.2 2.4 4.2 3 2 0 3 3 3 0 PX domain T6SS-SciN PF12790.7 AAFL01000019_00011 - 1.9e-14 53.4 0.2 2.1e-14 53.3 0.2 1.0 1 0 0 1 1 1 1 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 AAFL01000019_00012 - 1.3e-112 376.6 0.0 1.5e-112 376.4 0.0 1.0 1 0 0 1 1 1 1 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 AAFL01000019_00013 - 3.6e-35 121.5 0.0 4.2e-35 121.4 0.0 1.0 1 0 0 1 1 1 1 Type VI secretion system protein DotU T6SS_HCP PF05638.12 AAFL01000019_00014 - 5.7e-30 104.4 0.1 6.5e-30 104.2 0.1 1.0 1 0 0 1 1 1 1 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 AAFL01000019_00015 - 6.2e-41 140.5 0.0 1.1e-40 139.7 0.0 1.3 1 0 0 1 1 1 1 ImcF-related N-terminal domain IcmF_C PF06744.12 AAFL01000019_00015 - 5.9e-40 137.0 0.5 1.1e-39 136.2 0.5 1.4 1 0 0 1 1 1 1 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 AAFL01000019_00015 - 3.5e-26 92.4 2.0 5.3e-26 91.8 2.0 1.2 1 0 0 1 1 1 1 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 AAFL01000019_00015 - 0.0003 20.7 0.0 0.023 14.6 0.0 2.9 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 AAFL01000019_00015 - 0.0011 19.0 0.1 0.0043 17.1 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase Wzy_C PF04932.15 AAFL01000019_00015 - 0.0036 16.9 5.2 0.037 13.7 0.4 3.5 3 0 0 3 3 3 1 O-Antigen ligase AAA_29 PF13555.6 AAFL01000019_00015 - 0.055 13.2 0.1 0.43 10.4 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain FHA PF00498.26 AAFL01000019_00016 - 4.2e-05 23.8 0.0 0.0001 22.6 0.0 1.7 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 AAFL01000019_00016 - 0.0018 18.5 0.0 0.0046 17.3 0.0 1.7 2 0 0 2 2 2 1 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 AAFL01000019_00016 - 0.066 13.6 2.7 0.66 10.4 0.7 2.7 1 1 1 2 2 2 0 Ferredoxin-fold anticodon binding domain APH PF01636.23 AAFL01000021_00001 - 3.6e-07 30.4 0.0 3.9e-07 30.2 0.0 1.0 1 0 0 1 1 1 1 Phosphotransferase enzyme family Peptidase_C15 PF01470.17 AAFL01000021_00002 - 1.3e-51 175.6 0.1 1.5e-51 175.5 0.1 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase APH PF01636.23 AAFL01000021_00003 - 8.7e-24 84.8 0.0 1.3e-23 84.2 0.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 AAFL01000021_00003 - 2.9e-06 26.7 0.1 1e-05 24.9 0.1 1.7 1 1 0 1 1 1 1 Fructosamine kinase Choline_kinase PF01633.20 AAFL01000021_00003 - 0.00018 21.2 0.0 0.00027 20.6 0.0 1.3 1 0 0 1 1 1 1 Choline/ethanolamine kinase APH_6_hur PF04655.14 AAFL01000021_00003 - 0.014 14.8 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 AAFL01000021_00003 - 0.044 13.4 0.4 0.072 12.7 0.4 1.3 1 0 0 1 1 1 0 TMEM95 family AAA_18 PF13238.6 AAFL01000021_00004 - 3.4e-14 53.5 0.0 4.5e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain CPT PF07931.12 AAFL01000021_00004 - 5e-10 39.5 0.0 9.9e-10 38.5 0.0 1.5 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 AAFL01000021_00004 - 1.2e-09 38.5 0.0 1.8e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 AAFL01000021_00004 - 1.5e-08 34.1 0.0 3.2e-08 33.1 0.0 1.6 1 1 0 1 1 1 1 Zeta toxin AAA_28 PF13521.6 AAFL01000021_00004 - 2.9e-06 27.6 0.1 1.1e-05 25.7 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 AAFL01000021_00004 - 5.6e-06 26.8 0.0 5.5e-05 23.6 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 AAFL01000021_00004 - 2e-05 24.9 0.0 5.9e-05 23.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 AAFL01000021_00004 - 5.9e-05 23.1 0.0 8.8e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 AAFL01000021_00004 - 0.00012 22.5 0.1 0.00052 20.5 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AAFL01000021_00004 - 0.00031 21.2 0.0 0.00043 20.7 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.9 AAFL01000021_00004 - 0.0012 18.2 0.2 0.0018 17.6 0.1 1.4 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 AAFL01000021_00004 - 0.0017 18.7 0.0 0.0035 17.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 AAFL01000021_00004 - 0.0019 17.7 0.0 0.0038 16.7 0.0 1.5 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_30 PF13604.6 AAFL01000021_00004 - 0.0023 17.7 0.2 0.0039 16.9 0.2 1.4 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 AAFL01000021_00004 - 0.0029 18.1 0.1 0.003 18.1 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AAA_24 PF13479.6 AAFL01000021_00004 - 0.0039 16.9 0.1 0.0042 16.8 0.1 1.5 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.20 AAFL01000021_00004 - 0.004 17.1 0.0 0.049 13.5 0.0 2.1 1 1 1 2 2 2 1 Adenylylsulphate kinase TIP49 PF06068.13 AAFL01000021_00004 - 0.0061 15.8 0.2 0.019 14.2 0.0 1.8 2 0 0 2 2 2 1 TIP49 P-loop domain ATPase PF06745.13 AAFL01000021_00004 - 0.0075 15.6 0.7 0.016 14.6 0.1 1.8 2 0 0 2 2 2 1 KaiC T2SSE PF00437.20 AAFL01000021_00004 - 0.011 14.8 0.0 0.017 14.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein NTPase_1 PF03266.15 AAFL01000021_00004 - 0.012 15.5 0.5 0.034 14.1 0.2 1.8 2 0 0 2 2 2 0 NTPase Viral_helicase1 PF01443.18 AAFL01000021_00004 - 0.017 14.9 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ATPase_2 PF01637.18 AAFL01000021_00004 - 0.018 14.9 0.1 1 9.2 0.0 2.1 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea SRP54 PF00448.22 AAFL01000021_00004 - 0.019 14.6 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_11 PF13086.6 AAFL01000021_00004 - 0.022 14.6 0.0 0.069 12.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain Ploopntkinase1 PF18748.1 AAFL01000021_00004 - 0.022 14.3 0.0 0.46 10.0 0.0 2.1 2 0 0 2 2 2 0 P-loop Nucleotide Kinase1 RuvB_N PF05496.12 AAFL01000021_00004 - 0.023 14.5 0.1 0.08 12.7 0.0 1.8 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain MKT1_N PF12247.8 AAFL01000021_00004 - 0.027 14.8 0.0 0.1 13.0 0.0 2.0 1 1 0 1 1 1 0 Temperature dependent protein affecting M2 dsRNA replication AAA_25 PF13481.6 AAFL01000021_00004 - 0.028 14.0 0.1 0.071 12.7 0.1 1.7 2 0 0 2 2 2 0 AAA domain DnaB_C PF03796.15 AAFL01000021_00004 - 0.039 13.3 0.4 0.084 12.2 0.0 1.6 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain NB-ARC PF00931.22 AAFL01000021_00004 - 0.04 13.1 0.0 0.073 12.3 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Hydin_ADK PF17213.3 AAFL01000021_00004 - 0.041 14.2 1.1 0.054 13.8 0.2 1.6 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain NACHT PF05729.12 AAFL01000021_00004 - 0.042 13.8 0.0 0.07 13.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ArsA_ATPase PF02374.15 AAFL01000021_00004 - 0.047 12.9 0.1 0.099 11.8 0.0 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase Rad17 PF03215.15 AAFL01000021_00004 - 0.051 13.5 0.0 0.16 11.9 0.0 1.7 2 0 0 2 2 2 0 Rad17 P-loop domain RNA_helicase PF00910.22 AAFL01000021_00004 - 0.055 13.9 0.0 0.095 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Sigma54_activat PF00158.26 AAFL01000021_00004 - 0.056 13.2 0.0 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_7 PF12775.7 AAFL01000021_00004 - 0.069 12.7 0.5 0.12 11.9 0.0 1.6 2 1 0 2 2 2 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 AAFL01000021_00004 - 0.076 12.7 0.1 0.17 11.6 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein PhoH PF02562.16 AAFL01000021_00004 - 0.096 12.1 0.1 0.18 11.2 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein TnpV PF14198.6 AAFL01000021_00005 - 3.3e-41 139.8 0.5 3.6e-41 139.6 0.5 1.0 1 0 0 1 1 1 1 Transposon-encoded protein TnpV DUF4368 PF14287.6 AAFL01000021_00006 - 3.6e-23 81.6 2.1 1.2e-22 80.0 2.1 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4368) Recombinase PF07508.13 AAFL01000021_00006 - 3.6e-22 78.7 0.7 1.4e-21 76.9 0.2 2.4 2 0 0 2 2 2 1 Recombinase Resolvase PF00239.21 AAFL01000021_00006 - 5.2e-21 75.3 0.1 5.2e-21 75.3 0.1 3.5 3 1 0 3 3 3 1 Resolvase, N terminal domain Zn_ribbon_recom PF13408.6 AAFL01000021_00006 - 1.4e-12 47.9 2.6 4.3e-12 46.3 2.6 1.9 1 0 0 1 1 1 1 Recombinase zinc beta ribbon domain IMS PF00817.20 AAFL01000021_00007 - 1.1e-06 28.7 0.1 3e-06 27.3 0.1 1.6 1 1 0 1 1 1 1 impB/mucB/samB family HTH_3 PF01381.22 AAFL01000021_00009 - 8.4e-07 29.0 0.0 9.1e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 AAFL01000021_00009 - 0.00022 21.6 0.0 0.00024 21.4 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 AAFL01000021_00009 - 0.0007 19.1 0.2 0.00093 18.7 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_19 PF12844.7 AAFL01000021_00009 - 0.0012 18.8 0.0 0.0013 18.8 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 AAFL01000021_00009 - 0.002 18.0 0.1 0.0023 17.7 0.1 1.1 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 AAFL01000021_00009 - 0.002 17.9 0.0 0.0034 17.1 0.0 1.4 1 1 0 1 1 1 1 Homeodomain-like domain ENT PF03735.14 AAFL01000021_00009 - 0.0035 17.4 0.3 0.0052 16.8 0.3 1.5 1 1 0 1 1 1 1 ENT domain HTH_31 PF13560.6 AAFL01000021_00009 - 0.0089 16.4 0.0 0.011 16.1 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain CENP-B_N PF04218.13 AAFL01000021_00009 - 0.009 15.6 0.2 0.013 15.1 0.2 1.3 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 AAFL01000021_00009 - 0.0098 16.2 0.0 0.012 15.9 0.0 1.1 1 0 0 1 1 1 1 Transposase HTH_Tnp_ISL3 PF13542.6 AAFL01000021_00009 - 0.013 14.9 0.0 0.017 14.5 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 AAFL01000021_00009 - 0.019 14.9 0.1 0.022 14.7 0.1 1.1 1 0 0 1 1 1 0 HTH domain HTH_38 PF13936.6 AAFL01000021_00009 - 0.02 14.7 0.0 0.024 14.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AAFL01000021_00009 - 0.029 14.2 0.0 0.031 14.1 0.0 1.1 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Phage_CI_repr PF07022.13 AAFL01000021_00009 - 0.03 14.4 0.0 0.033 14.3 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4 PF04545.16 AAFL01000021_00009 - 0.034 13.7 0.0 0.041 13.4 0.0 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_17 PF12728.7 AAFL01000021_00009 - 0.081 13.1 0.1 7.6 6.8 0.0 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 AAFL01000021_00009 - 0.085 12.7 0.0 9.3 6.1 0.0 2.1 1 1 1 2 2 2 0 MerR family regulatory protein DUF5601 PF18151.1 AAFL01000021_00011 - 0.038 14.3 0.2 0.063 13.6 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5601) CCDC-167 PF15188.6 AAFL01000021_00013 - 0.002 18.4 0.4 0.0033 17.7 0.4 1.5 1 1 0 1 1 1 1 Coiled-coil domain-containing protein 167 DUF3461 PF11944.8 AAFL01000021_00013 - 0.015 15.4 3.5 0.04 14.0 3.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3461) HSBP1 PF06825.12 AAFL01000021_00013 - 0.033 14.0 0.1 2.2 8.2 0.0 2.1 1 1 1 2 2 2 0 Heat shock factor binding protein 1 Streptin-Immun PF11083.8 AAFL01000021_00013 - 0.052 14.0 0.6 0.2 12.1 0.1 1.9 1 1 1 2 2 2 0 Lantibiotic streptin immunity protein YafQ_toxin PF15738.5 AAFL01000021_00018 - 1.6e-26 92.4 3.7 2.1e-26 92.0 3.7 1.1 1 0 0 1 1 1 1 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 AAFL01000021_00018 - 1.9e-06 28.4 0.6 2.2e-06 28.2 0.6 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE Ribosomal_S2 PF00318.20 AAFL01000021_00018 - 0.0042 16.3 0.9 0.0053 16.0 0.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S2 ParE-like_toxin PF15781.5 AAFL01000021_00018 - 0.017 15.1 1.6 0.035 14.1 1.6 1.6 1 1 0 1 1 1 0 ParE-like toxin of type II bacterial toxin-antitoxin system WGR PF05406.15 AAFL01000021_00023 - 2.4e-07 30.7 0.6 2.7e-07 30.5 0.6 1.1 1 0 0 1 1 1 1 WGR domain Cadherin_pro PF08758.11 AAFL01000021_00023 - 0.017 15.3 0.0 0.021 15.0 0.0 1.3 1 0 0 1 1 1 0 Cadherin prodomain like FlaC_arch PF05377.11 AAFL01000021_00024 - 0.0083 16.5 2.3 0.0083 16.5 2.3 1.7 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) Phage_integrase PF00589.22 AAFL01000021_00025 - 5.1e-24 85.0 0.5 8.3e-24 84.3 0.5 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 AAFL01000021_00025 - 2.3e-05 24.6 3.9 0.00043 20.5 1.9 2.8 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 AAFL01000021_00025 - 0.00011 22.4 4.6 0.00011 22.4 4.6 2.6 3 0 0 3 3 3 1 Phage integrase SAM-like domain Phyto-Amp PF15438.6 AAFL01000021_00025 - 0.0094 15.8 0.3 0.017 14.9 0.3 1.4 1 0 0 1 1 1 1 Antigenic membrane protein of phytoplasma YbjN PF10722.9 AAFL01000021_00025 - 0.011 15.8 0.3 0.51 10.4 0.1 2.5 2 0 0 2 2 2 0 Putative bacterial sensory transduction regulator Phage_int_SAM_3 PF14659.6 AAFL01000021_00025 - 0.028 14.7 3.2 0.11 12.8 3.2 2.1 1 1 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain SprT-like PF10263.9 AAFL01000021_00028 - 0.056 13.3 0.1 0.13 12.1 0.1 1.6 1 0 0 1 1 1 0 SprT-like family Peptidase_M78 PF06114.13 AAFL01000021_00028 - 0.077 12.9 0.1 0.18 11.8 0.1 1.6 1 0 0 1 1 1 0 IrrE N-terminal-like domain DZR PF12773.7 AAFL01000025_00003 - 0.039 14.0 0.3 0.054 13.5 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon DiS_P_DiS PF06750.13 AAFL01000025_00003 - 0.04 14.1 0.4 0.077 13.1 0.4 1.5 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain Myc-LZ PF02344.15 AAFL01000025_00004 - 0.045 13.9 0.4 0.054 13.6 0.4 1.1 1 0 0 1 1 1 0 Myc leucine zipper domain DivIC PF04977.15 AAFL01000025_00005 - 0.0014 18.3 0.2 0.0014 18.3 0.2 4.2 5 0 0 5 5 5 1 Septum formation initiator Prok-TraM PF09228.10 AAFL01000025_00007 - 0.072 13.5 0.0 0.17 12.2 0.0 1.6 1 0 0 1 1 1 0 Prokaryotic Transcriptional repressor TraM Y1_Tnp PF01797.16 AAFL01000026_00001 - 8.8e-37 125.9 2.5 1.2e-36 125.4 2.5 1.2 1 0 0 1 1 1 1 Transposase IS200 like PcfJ PF14284.6 AAFL01000026_00002 - 7.7e-06 25.9 1.5 8.6e-06 25.7 1.5 1.1 1 0 0 1 1 1 1 PcfJ-like protein NmrA PF05368.13 AAFL01000026_00002 - 0.0093 15.5 0.3 0.012 15.2 0.3 1.1 1 0 0 1 1 1 1 NmrA-like family DUF4060 PF13269.6 AAFL01000026_00002 - 0.085 12.9 0.1 5.4 7.2 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4060) GTP_EFTU PF00009.27 AAFL01000026_00004 - 1.8e-58 197.3 0.3 2.5e-58 196.9 0.3 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 AAFL01000026_00004 - 3.5e-23 81.7 0.0 9.7e-23 80.2 0.0 1.8 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_C PF00679.24 AAFL01000026_00004 - 9.3e-17 60.9 0.0 2.4e-16 59.6 0.0 1.7 1 0 0 1 1 1 1 Elongation factor G C-terminus EFG_II PF14492.6 AAFL01000026_00004 - 1.3e-12 47.6 0.1 3e-12 46.5 0.1 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II MMR_HSR1 PF01926.23 AAFL01000026_00004 - 1.9e-06 28.0 0.1 4.6e-06 26.7 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 AAFL01000026_00004 - 0.0003 21.1 0.0 0.00072 19.9 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RF3_C PF16658.5 AAFL01000026_00004 - 0.018 14.8 0.0 0.037 13.8 0.0 1.5 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain Septin PF00735.18 AAFL01000026_00004 - 0.021 14.1 0.1 0.038 13.3 0.1 1.3 1 0 0 1 1 1 0 Septin AIG1 PF04548.16 AAFL01000026_00004 - 0.046 13.0 0.0 0.12 11.7 0.0 1.6 1 0 0 1 1 1 0 AIG1 family DUF5442 PF17514.2 AAFL01000026_00005 - 0.075 13.2 0.4 0.14 12.4 0.0 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF5442) AAA_31 PF13614.6 AAFL01000027_00001 - 0.00011 22.2 0.6 0.0014 18.6 0.1 2.2 1 1 1 2 2 2 1 AAA domain CbiA PF01656.23 AAFL01000027_00001 - 0.0021 18.1 0.8 0.019 15.0 0.8 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 AAFL01000027_00001 - 0.014 14.8 0.0 0.019 14.4 0.0 1.1 1 0 0 1 1 1 0 short chain dehydrogenase Put_DNA-bind_N PF06971.13 AAFL01000027_00003 - 0.034 14.2 0.0 0.058 13.4 0.0 1.3 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus DUF2974 PF11187.8 AAFL01000027_00007 - 0.00072 19.2 0.1 0.0011 18.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2974) DUF676 PF05057.14 AAFL01000027_00007 - 0.044 13.3 0.0 0.086 12.3 0.0 1.5 1 0 0 1 1 1 0 Putative serine esterase (DUF676) DUF2239 PF09998.9 AAFL01000028_00001 - 0.081 12.7 0.7 0.1 12.4 0.7 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2239) Ank_3 PF13606.6 AAFL01000028_00002 - 1.1e-09 37.7 0.3 0.013 16.0 0.0 4.7 4 0 0 4 4 4 2 Ankyrin repeat Ank_2 PF12796.7 AAFL01000028_00002 - 4e-08 33.7 0.1 2.6e-07 31.2 0.0 2.2 2 0 0 2 2 2 1 Ankyrin repeats (3 copies) Ank PF00023.30 AAFL01000028_00002 - 0.00041 20.7 0.0 15 6.2 0.0 3.6 3 0 0 3 3 3 2 Ankyrin repeat Ank_5 PF13857.6 AAFL01000028_00002 - 0.0021 18.3 0.1 0.029 14.7 0.0 2.9 3 0 0 3 3 3 1 Ankyrin repeats (many copies) Ank_4 PF13637.6 AAFL01000028_00002 - 0.0029 18.2 0.1 0.18 12.4 0.1 3.0 3 0 0 3 3 3 1 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 AAFL01000028_00003 - 6.7e-08 32.7 0.0 6.7e-08 32.7 0.0 3.5 3 1 0 3 3 3 1 Restriction endonuclease fold toxin 7 Ank_2 PF12796.7 AAFL01000028_00004 - 4e-12 46.6 0.5 2.9e-07 31.0 0.0 2.4 1 1 1 2 2 2 2 Ankyrin repeats (3 copies) Ank_3 PF13606.6 AAFL01000028_00004 - 1.4e-10 40.4 0.3 0.0017 18.7 0.0 4.7 4 0 0 4 4 4 2 Ankyrin repeat Ank PF00023.30 AAFL01000028_00004 - 1.4e-05 25.3 0.0 0.76 10.3 0.0 3.6 3 0 0 3 3 3 2 Ankyrin repeat Ank_4 PF13637.6 AAFL01000028_00004 - 8.4e-05 23.0 0.2 0.018 15.6 0.1 3.1 3 0 0 3 3 3 1 Ankyrin repeats (many copies) FAM25 PF15825.5 AAFL01000028_00004 - 0.0056 17.0 1.3 2.4 8.6 0.2 2.6 2 0 0 2 2 2 2 FAM25 family Ank_5 PF13857.6 AAFL01000028_00004 - 0.095 13.0 0.1 2.7 8.4 0.0 3.3 3 1 1 4 4 4 0 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 AAFL01000028_00005 - 1.3e-08 35.0 0.4 2.4e-08 34.2 0.1 1.6 2 0 0 2 2 2 1 Restriction endonuclease fold toxin 7 Tn7_Tnp_TnsA_N PF08722.11 AAFL01000028_00005 - 0.0021 18.2 1.0 0.0029 17.8 0.1 1.7 2 0 0 2 2 2 1 TnsA endonuclease N terminal VRR_NUC PF08774.11 AAFL01000028_00005 - 0.041 13.9 0.0 0.13 12.4 0.0 1.8 1 1 1 2 2 2 0 VRR-NUC domain adh_short PF00106.25 AAFL01000029_00001 - 0.0094 15.4 0.0 0.01 15.3 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Mur_ligase_C PF02875.21 AAFL01000029_00001 - 0.086 13.1 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Mur ligase family, glutamate ligase domain RHH_7 PF16777.5 AAFL01000029_00002 - 6.1e-06 26.5 1.0 6.9e-06 26.4 1.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 AAFL01000029_00002 - 0.03 14.7 0.0 0.038 14.4 0.0 1.3 1 0 0 1 1 1 0 UDP-glucuronate decarboxylase N-terminal NYN PF01936.18 AAFL01000029_00005 - 1.2e-09 38.8 0.0 1.4e-09 38.6 0.0 1.2 1 0 0 1 1 1 1 NYN domain Peroxin-22 PF12827.7 AAFL01000029_00005 - 0.014 15.3 0.5 0.028 14.3 0.5 1.6 1 1 0 1 1 1 0 Peroxisomal biogenesis protein family PIN7 PF18475.1 AAFL01000029_00005 - 0.028 15.1 0.0 0.045 14.4 0.0 1.4 1 0 0 1 1 1 0 PIN domain AAA_25 PF13481.6 AAFL01000031_00001 - 4.4e-15 55.8 0.0 1e-14 54.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 AAFL01000031_00001 - 0.00028 20.3 0.0 0.0018 17.6 0.0 2.1 1 1 1 2 2 2 2 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 AAFL01000031_00001 - 0.0021 17.8 0.0 0.014 15.2 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein ATPase PF06745.13 AAFL01000031_00001 - 0.007 15.7 0.0 0.07 12.5 0.0 2.5 2 1 0 2 2 2 1 KaiC AAA PF00004.29 AAFL01000031_00001 - 0.02 15.3 0.3 0.31 11.5 0.0 2.7 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) HicA_toxin PF07927.12 AAFL01000031_00002 - 6.1e-11 42.2 0.3 7.4e-11 41.9 0.3 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, Endomucin PF07010.12 AAFL01000032_00002 - 0.029 14.4 0.5 0.03 14.3 0.5 1.1 1 0 0 1 1 1 0 Endomucin HicA_toxin PF07927.12 AAFL01000032_00003 - 6.2e-11 42.2 0.3 7.4e-11 41.9 0.3 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, N-glycanase_N PF09112.10 AAFL01000033_00001 - 0.016 15.0 0.1 0.021 14.6 0.1 1.2 1 0 0 1 1 1 0 Peptide-N-glycosidase F, N terminal RHH_7 PF16777.5 AAFL01000033_00002 - 6.1e-06 26.5 1.0 6.9e-06 26.4 1.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 AAFL01000033_00002 - 0.03 14.7 0.0 0.038 14.4 0.0 1.3 1 0 0 1 1 1 0 UDP-glucuronate decarboxylase N-terminal adh_short PF00106.25 AAFL01000033_00003 - 0.0094 15.4 0.0 0.01 15.3 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Mur_ligase_C PF02875.21 AAFL01000033_00003 - 0.086 13.1 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Mur ligase family, glutamate ligase domain HicB_lk_antitox PF15919.5 AAFL01000034_00001 - 4.4e-08 33.3 0.0 6.3e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system Toprim_3 PF13362.6 AAFL01000035_00001 - 1.3e-06 28.7 0.1 4.4e-06 27.0 0.0 1.8 2 0 0 2 2 2 1 Toprim domain Retrotrans_gag PF03732.17 AAFL01000035_00001 - 0.0086 16.3 0.1 0.88 9.9 0.0 2.3 2 0 0 2 2 2 2 Retrotransposon gag protein Adenyl_transf PF04439.12 AJ489618_00001 - 6.7e-81 271.5 0.9 7.6e-81 271.3 0.9 1.0 1 0 0 1 1 1 1 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 AJ489618_00002 - 7.8e-21 74.5 0.1 1e-20 74.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 AJ489618_00002 - 1.4e-13 51.1 0.1 2.4e-13 50.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 AJ489618_00002 - 2.6e-12 46.8 0.0 3.6e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 AJ489618_00002 - 3e-10 40.5 1.6 3.6e-10 40.2 1.6 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 AJ489618_00002 - 0.00021 21.4 0.0 0.0004 20.4 0.0 1.6 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 AJ489618_00002 - 0.00052 20.7 0.0 0.00064 20.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 AJ489618_00002 - 0.0019 18.3 0.0 0.0078 16.3 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AJ489618_00002 - 0.015 15.3 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_15 PF17013.5 AJ489618_00002 - 0.035 13.6 0.2 0.11 12.0 0.2 1.8 1 1 0 1 1 1 0 Putative acetyl-transferase Acetyltransf_8 PF13523.6 AJ489618_00002 - 0.042 13.5 0.0 0.64 9.7 0.0 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain PanZ PF12568.8 AJ489618_00002 - 0.08 12.7 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ APH PF01636.23 AJ489618_00003 - 4.5e-26 92.2 0.0 5.2e-26 92.0 0.0 1.0 1 0 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 AJ489618_00003 - 0.0022 17.6 0.0 0.0036 16.9 0.0 1.4 1 1 0 1 1 1 1 Choline/ethanolamine kinase RIO1 PF01163.22 AJ489618_00003 - 0.0099 15.5 0.0 1.8 8.2 0.0 2.2 2 0 0 2 2 2 2 RIO1 family HTH_11 PF08279.12 AJ489618_00004 - 0.00042 20.2 0.1 0.00056 19.8 0.1 1.2 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 AJ489618_00004 - 0.096 12.3 0.3 0.14 11.7 0.3 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Resolvase PF00239.21 AJ490186_00001 - 4.3e-18 65.8 0.3 7.1e-18 65.1 0.3 1.3 1 0 0 1 1 1 1 Resolvase, N terminal domain MerR PF00376.23 AJ490186_00001 - 1.5e-12 47.1 0.0 2.4e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 MerR family regulatory protein MerR_1 PF13411.6 AJ490186_00001 - 6e-11 42.3 0.0 1.7e-10 40.8 0.0 1.8 2 0 0 2 2 2 1 MerR HTH family regulatory protein HTH_17 PF12728.7 AJ490186_00001 - 0.00043 20.4 0.0 0.00082 19.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain NTPase_P4 PF11602.8 AJ490186_00001 - 0.0027 17.0 0.0 0.0034 16.6 0.0 1.1 1 0 0 1 1 1 1 ATPase P4 of dsRNA bacteriophage phi-12 PIN_2 PF10130.9 AJ490186_00001 - 0.063 13.5 1.4 0.083 13.1 0.4 1.6 2 0 0 2 2 2 0 PIN domain HTH_23 PF13384.6 AJ490186_00001 - 0.068 13.0 0.0 0.31 10.9 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain OrfB_Zn_ribbon PF07282.11 AJ490186_00002 - 2.1e-22 78.8 0.9 4.2e-22 77.8 0.9 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 AJ490186_00002 - 2.7e-18 66.4 4.5 2.8e-18 66.3 2.3 2.1 2 1 0 2 2 2 1 Probable transposase HTH_OrfB_IS605 PF12323.8 AJ490186_00002 - 7.7e-15 54.1 0.3 2.2e-14 52.6 0.3 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1595 PF12760.7 AJ490186_00002 - 0.036 14.0 2.2 0.071 13.1 2.2 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain APH PF01636.23 AJ490186_00003 - 5.9e-26 91.8 0.0 6.9e-26 91.6 0.0 1.0 1 0 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 AJ490186_00003 - 0.0018 17.9 0.0 0.0029 17.2 0.0 1.4 1 1 0 1 1 1 1 Choline/ethanolamine kinase RIO1 PF01163.22 AJ490186_00003 - 0.018 14.7 0.0 3 7.4 0.0 2.2 1 1 0 2 2 2 0 RIO1 family PRELI PF04707.14 AVFM02000066_00001 - 0.038 13.8 0.4 0.038 13.8 0.4 1.8 2 0 0 2 2 2 0 PRELI-like family Prismane PF03063.20 AVFM02000066_00001 - 0.089 11.5 0.1 0.12 11.0 0.1 1.2 1 0 0 1 1 1 0 Prismane/CO dehydrogenase family Relaxase PF03432.14 AVFM02000068_00001 - 2.8e-10 40.2 7.9 2.8e-10 40.2 7.9 2.4 2 1 0 2 2 2 2 Relaxase/Mobilisation nuclease domain Helicase_C PF00271.31 AVFM02000069_00001 - 0.0015 18.9 0.0 0.0015 18.9 0.0 3.0 3 1 1 4 4 4 1 Helicase conserved C-terminal domain efb-c PF12199.8 AVFM02000069_00002 - 0.05 13.7 0.3 0.07 13.2 0.3 1.3 1 0 0 1 1 1 0 Extracellular fibrinogen binding protein C terminal Toprim PF01751.22 AVFM02000070_00001 - 3.2e-13 49.8 0.0 4.3e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 Toprim domain Topoisom_bac PF01131.20 AVFM02000070_00001 - 0.008 15.2 0.0 0.012 14.6 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase EF-hand_8 PF13833.6 AVFM02000070_00001 - 0.019 14.8 0.0 0.046 13.6 0.0 1.6 1 0 0 1 1 1 0 EF-hand domain pair SNF2_N PF00176.23 AVFM02000073_00001 - 1.2e-10 40.6 0.2 3.1e-10 39.3 0.2 1.7 1 1 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.15 AVFM02000073_00001 - 6.1e-10 39.4 9.3 1.8e-08 34.5 9.2 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 AVFM02000073_00001 - 5.8e-07 29.4 0.4 0.0003 20.6 0.0 2.4 1 1 1 2 2 2 2 DEAD/DEAH box helicase AAA_11 PF13086.6 AVFM02000073_00001 - 0.0032 17.3 4.6 1 9.1 3.0 2.3 1 1 1 2 2 2 2 AAA domain Tup_N PF08581.10 AVFM02000073_00001 - 0.072 13.4 0.3 0.072 13.4 0.3 4.0 4 1 0 4 4 4 0 Tup N-terminal Eco57I PF07669.11 AVFM02000073_00002 - 1.3e-05 25.6 0.2 5.2e-05 23.7 0.2 2.1 1 0 0 1 1 1 1 Eco57I restriction-modification methylase MTS PF05175.14 AVFM02000073_00002 - 0.0038 16.8 0.0 0.0091 15.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase small domain RHH_7 PF16777.5 AVFM02000073_00003 - 2.1e-07 31.2 1.1 2.4e-07 31.1 1.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 AVFM02000073_00003 - 0.099 12.9 0.0 0.11 12.7 0.0 1.1 1 0 0 1 1 1 0 Butirosin biosynthesis protein H, N-terminal Cag12 PF13117.6 AVFM02000074_00002 - 4.8e-17 62.3 0.3 6e-17 61.9 0.3 1.1 1 0 0 1 1 1 1 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 AVFM02000074_00002 - 0.052 13.7 0.1 0.068 13.4 0.1 1.2 1 0 0 1 1 1 0 ERCC4 domain DUF2689 PF10894.8 AVFM02000074_00002 - 0.08 12.7 0.3 0.22 11.3 0.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2689) T4SS-DNA_transf PF02534.14 AVFM02000074_00003 - 1e-104 351.0 0.1 1.5e-104 350.4 0.1 1.2 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 AVFM02000074_00003 - 9.3e-25 87.0 0.0 2.1e-24 85.9 0.0 1.6 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 AVFM02000074_00003 - 1.9e-14 53.4 0.0 1.3e-10 40.8 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 AVFM02000074_00003 - 0.047 13.8 0.1 0.11 12.6 0.1 1.6 1 0 0 1 1 1 0 Yos9 dimerzation domain T2SSE PF00437.20 AVFM02000074_00004 - 6.3e-54 182.9 0.0 7.3e-54 182.7 0.0 1.0 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 AVFM02000074_00004 - 6e-05 23.6 0.0 0.00012 22.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter FtsK_SpoIIIE PF01580.18 AVFM02000074_00004 - 0.00016 21.2 0.0 0.00025 20.5 0.0 1.2 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_7 PF12775.7 AVFM02000074_00004 - 0.00021 20.8 0.0 0.00037 20.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_22 PF13401.6 AVFM02000074_00004 - 0.0014 18.9 0.0 0.0025 18.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 AVFM02000074_00004 - 0.0026 17.5 0.0 0.0052 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain DEAD PF00270.29 AVFM02000074_00004 - 0.003 17.3 0.0 0.0047 16.7 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase TsaE PF02367.17 AVFM02000074_00004 - 0.0036 17.3 0.0 0.0072 16.3 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 AVFM02000074_00004 - 0.0048 15.9 0.0 0.0071 15.3 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain NACHT PF05729.12 AVFM02000074_00004 - 0.0072 16.3 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Septin PF00735.18 AVFM02000074_00004 - 0.0086 15.4 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 Septin ATPase_2 PF01637.18 AVFM02000074_00004 - 0.0087 16.0 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 AVFM02000074_00004 - 0.018 14.8 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain ResIII PF04851.15 AVFM02000074_00004 - 0.019 15.0 0.0 0.041 13.9 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 AVFM02000074_00004 - 0.021 13.7 0.0 0.033 13.1 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 AVFM02000074_00004 - 0.023 14.8 0.1 0.046 13.8 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_29 PF13555.6 AVFM02000074_00004 - 0.024 14.4 0.0 0.053 13.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 AVFM02000074_00004 - 0.032 14.3 0.1 0.1 12.6 0.0 1.9 2 0 0 2 2 1 0 AAA domain Pox_A32 PF04665.12 AVFM02000074_00004 - 0.035 13.6 0.0 0.056 12.9 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein RNA_helicase PF00910.22 AVFM02000074_00004 - 0.036 14.4 0.0 0.1 13.0 0.0 1.8 2 0 0 2 2 2 0 RNA helicase ATP_bind_1 PF03029.17 AVFM02000074_00004 - 0.037 13.8 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 AVFM02000074_00004 - 0.039 13.2 0.0 0.067 12.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin PRK PF00485.18 AVFM02000074_00004 - 0.051 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 AVFM02000074_00004 - 0.063 11.9 0.0 0.085 11.5 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_16 PF13191.6 AVFM02000074_00004 - 0.064 13.6 0.0 0.099 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Microtub_bd PF16796.5 AVFM02000074_00004 - 0.084 12.8 0.3 0.22 11.4 0.3 1.7 1 1 0 1 1 1 0 Microtubule binding MobB PF03205.14 AVFM02000074_00004 - 0.088 12.7 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TrbI PF03743.14 AVFM02000074_00005 - 1.9e-48 164.8 0.1 3.2e-48 164.1 0.1 1.3 1 0 0 1 1 1 1 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 AVFM02000074_00005 - 0.022 13.8 0.1 0.032 13.3 0.1 1.1 1 0 0 1 1 1 0 HaeIII restriction endonuclease HNOBA PF07701.14 AVFM02000075_00001 - 0.077 12.4 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Heme NO binding associated cEGF PF12662.7 AVFM02000075_00001 - 0.081 12.9 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Complement Clr-like EGF-like Phage_pRha PF09669.10 AVFM02000075_00002 - 1.5e-28 99.2 0.0 2.3e-28 98.6 0.0 1.3 1 0 0 1 1 1 1 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 AVFM02000075_00002 - 0.0018 18.4 0.0 0.0038 17.3 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF3251 PF11622.8 AVFM02000075_00003 - 0.079 12.6 0.1 0.19 11.4 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3251) SSB PF00436.25 AVFM02000075_00004 - 2.6e-25 88.5 0.1 3.5e-25 88.0 0.1 1.2 1 0 0 1 1 1 1 Single-strand binding protein family IF2_N PF04760.15 AVFM02000075_00005 - 0.00029 20.6 7.3 0.00049 19.9 2.0 2.3 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 AVFM02000075_00005 - 0.018 15.6 1.1 0.021 15.3 1.1 1.1 1 0 0 1 1 1 0 FliG N-terminal domain HTH_16 PF12645.7 AVFM02000075_00005 - 0.041 13.9 2.0 0.38 10.8 0.4 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain PSK_trans_fac PF07704.11 AVFM02000075_00005 - 0.088 13.6 0.3 2.2 9.1 0.1 2.1 2 0 0 2 2 2 0 Rv0623-like transcription factor T4SS PF07996.11 AVFM02000075_00006 - 5e-28 98.9 13.9 7.2e-28 98.3 13.9 1.2 1 0 0 1 1 1 1 Type IV secretion system proteins DUF3045 PF11243.8 AVFM02000075_00006 - 0.0042 17.2 1.4 0.016 15.3 0.1 2.5 3 0 0 3 3 3 1 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 AVFM02000075_00006 - 0.007 17.1 5.8 0.007 17.1 5.8 2.4 2 1 0 2 2 2 1 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 AVFM02000075_00006 - 0.092 13.4 3.4 0.078 13.6 1.0 2.1 2 1 0 2 2 2 0 von Willebrand factor type A domain TrbL PF04610.14 AVFM02000075_00007 - 2.7e-29 102.5 30.5 2.7e-29 102.5 30.5 1.5 1 1 0 1 1 1 1 TrbL/VirB6 plasmid conjugal transfer protein Trep_dent_lipo PF09710.10 AVFM02000075_00008 - 0.016 14.1 0.0 0.016 14.1 0.0 1.2 1 0 0 1 1 1 0 Treponema clustered lipoprotein (Trep_dent_lipo) VirB8 PF04335.13 AVFM02000075_00009 - 2e-52 178.1 0.5 2.2e-52 178.0 0.5 1.0 1 0 0 1 1 1 1 VirB8 protein OppC_N PF12911.7 AVFM02000075_00009 - 0.012 15.6 0.7 0.025 14.6 0.7 1.5 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 AVFM02000075_00010 - 3.2e-55 187.1 1.3 5.3e-55 186.4 1.3 1.3 1 1 0 1 1 1 1 Conjugal transfer protein DUF4354 PF14263.6 AVFM02000075_00010 - 0.086 12.7 0.3 0.22 11.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4354) SSB PF00436.25 AVFM02000076_00001 - 1.3e-23 83.0 0.0 1.7e-23 82.7 0.0 1.2 1 0 0 1 1 1 1 Single-strand binding protein family DnaJ-X PF14308.6 AVFM02000076_00001 - 0.0027 17.2 0.1 0.0037 16.7 0.1 1.2 1 0 0 1 1 1 1 X-domain of DnaJ-containing DUF4389 PF14333.6 AVFM02000076_00002 - 0.054 13.4 3.8 0.08 12.9 3.8 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4389) MgtE_N PF03448.17 AVFM02000077_00001 - 4e-05 24.2 0.3 0.039 14.6 0.3 2.1 1 1 1 2 2 2 2 MgtE intracellular N domain Com_YlbF PF06133.11 AVFM02000077_00001 - 0.0099 16.5 1.9 0.0099 16.5 1.9 1.5 2 0 0 2 2 2 1 Control of competence regulator ComK, YlbF/YmcA CpXC PF14353.6 AVFM02000077_00002 - 0.033 14.2 2.2 0.041 13.9 2.2 1.3 1 1 0 1 1 1 0 CpXC protein T4SS PF07996.11 AVFM02000078_00001 - 3.4e-07 30.9 8.7 3.4e-07 30.9 8.7 2.4 1 1 1 2 2 2 1 Type IV secretion system proteins HBM PF16591.5 AVFM02000078_00001 - 0.0086 15.5 15.0 0.015 14.7 0.2 2.3 2 0 0 2 2 2 2 Helical bimodular sensor domain HTH_16 PF12645.7 AVFM02000078_00001 - 0.053 13.6 0.4 0.79 9.8 0.2 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain FIVAR PF07554.13 AVFM02000078_00002 - 0.034 14.9 8.8 0.056 14.2 8.8 1.3 1 1 0 1 1 1 0 FIVAR domain PRD PF00874.20 AVFM02000078_00002 - 0.077 13.3 4.1 0.096 13.0 4.1 1.1 1 0 0 1 1 1 0 PRD domain T4SS-DNA_transf PF02534.14 AVFM02000079_00001 - 3e-58 197.8 2.6 1.2e-57 195.8 2.6 1.7 1 1 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer TrwB_AAD_bind PF10412.9 AVFM02000079_00001 - 4.2e-19 68.7 0.0 2.4e-14 53.1 0.0 2.1 1 1 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 AVFM02000079_00001 - 3e-14 53.1 0.0 2.4e-13 50.2 0.0 2.2 2 0 0 2 2 2 1 TraM recognition site of TraD and TraG DUF418 PF04235.12 AVFM02000079_00001 - 0.057 13.4 1.4 0.091 12.7 1.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF418) VirB8 PF04335.13 AVFM02000080_00001 - 3.6e-29 102.1 0.9 4.2e-29 101.9 0.9 1.0 1 0 0 1 1 1 1 VirB8 protein TrwB_AAD_bind PF10412.9 AVFM02000080_00003 - 6.4e-05 22.0 0.0 7.6e-05 21.8 0.0 1.1 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain CNTF PF01110.17 AVFM02000080_00003 - 0.084 12.2 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Ciliary neurotrophic factor CagX PF03524.15 AVFM02000082_00001 - 9.1e-26 90.9 0.7 1e-25 90.7 0.7 1.0 1 0 0 1 1 1 1 Conjugal transfer protein DUF4905 PF16248.5 AVFM02000082_00001 - 0.055 13.4 0.1 0.2 11.6 0.1 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4905) Phosphodiest PF01663.22 AVFM02000082_00001 - 0.076 12.6 1.3 0.25 10.9 1.1 1.7 1 1 1 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase TrbI PF03743.14 AVFM02000082_00003 - 8.1e-32 110.6 0.7 1.1e-31 110.2 0.7 1.1 1 0 0 1 1 1 1 Bacterial conjugation TrbI-like protein TrbI PF03743.14 AVFM02000082_00004 - 1.8e-06 27.9 0.1 1.9e-06 27.9 0.1 1.1 1 0 0 1 1 1 1 Bacterial conjugation TrbI-like protein TraH_2 PF06871.11 AVFM02000082_00004 - 0.06 13.0 0.2 5.2 6.6 0.0 1.9 1 1 1 2 2 2 0 TraH_2 FOXP-CC PF16159.5 AVFM02000082_00005 - 0.0033 18.0 0.3 0.0038 17.8 0.3 1.2 1 0 0 1 1 1 1 FOXP coiled-coil domain TrbL PF04610.14 AVFM02000084_00002 - 1.5e-31 109.9 22.6 1.5e-31 109.9 22.6 2.2 3 0 0 3 3 3 1 TrbL/VirB6 plasmid conjugal transfer protein Topoisom_bac PF01131.20 AVFM02000084_00003 - 2.2e-13 50.0 0.0 3e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 AVFM02000084_00003 - 4.4e-10 39.7 0.3 9.2e-10 38.7 0.2 1.5 2 0 0 2 2 2 1 Toprim domain Toprim_4 PF13662.6 AVFM02000084_00003 - 0.1 13.1 0.0 0.29 11.6 0.0 1.8 2 1 0 2 2 2 0 Toprim domain DUF2852 PF11014.8 AVFM02000085_00002 - 0.0052 16.9 1.5 0.0052 16.9 1.5 2.6 3 0 0 3 3 3 1 Protein of unknown function (DUF2852) DUF5442 PF17514.2 AVFM02000085_00002 - 0.026 14.7 5.3 0.026 14.7 5.3 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5442) Toprim_2 PF13155.6 AVFM02000085_00004 - 2.6e-13 50.2 0.9 2e-12 47.3 0.1 2.1 2 0 0 2 2 2 1 Toprim-like DUF3991 PF13154.6 AVFM02000085_00004 - 0.00012 22.3 0.1 0.00032 21.0 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3991) Sushi_2 PF09014.10 AVFM02000085_00004 - 0.056 13.3 0.6 0.091 12.7 0.1 1.6 2 0 0 2 2 2 0 Beta-2-glycoprotein-1 fifth domain Toprim_3 PF13362.6 AVFM02000085_00004 - 0.067 13.6 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 Toprim domain Toprim_4 PF13662.6 AVFM02000085_00004 - 0.071 13.6 0.0 0.19 12.2 0.0 1.7 1 1 0 1 1 1 0 Toprim domain Toprim PF01751.22 AVFM02000085_00004 - 0.09 13.0 1.2 0.15 12.3 0.5 1.7 1 1 1 2 2 2 0 Toprim domain Cys_rich_KTR PF14205.6 AVFM020000_00001 - 4.7e-32 109.6 5.1 5.2e-32 109.4 5.1 1.0 1 0 0 1 1 1 1 Cysteine-rich KTR Prim_Zn_Ribbon PF08273.12 AVFM020000_00001 - 0.00057 20.1 1.3 0.0023 18.2 0.0 2.0 2 0 0 2 2 2 1 Zinc-binding domain of primase-helicase zf-ISL3 PF14690.6 AVFM020000_00001 - 0.0029 18.2 0.6 0.78 10.5 0.1 2.1 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.7 AVFM020000_00001 - 0.0033 17.4 1.7 1.1 9.3 0.1 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 AVFM020000_00001 - 0.0038 17.3 1.4 0.87 9.8 0.2 2.2 2 0 0 2 2 2 2 Zinc ribbon domain zf-TFIIB PF13453.6 AVFM020000_00001 - 0.0042 16.4 0.8 0.53 9.7 0.1 2.2 2 0 0 2 2 2 1 Transcription factor zinc-finger DNA_ligase_ZBD PF03119.16 AVFM020000_00001 - 0.0048 16.9 1.8 0.046 13.7 0.1 2.2 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain NOB1_Zn_bind PF08772.11 AVFM020000_00001 - 0.0056 16.8 2.2 0.77 10.0 0.1 2.1 1 1 1 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like Nudix_N_2 PF14803.6 AVFM020000_00001 - 0.01 15.8 1.1 0.51 10.3 0.0 2.6 2 1 1 3 3 3 0 Nudix N-terminal Elf1 PF05129.13 AVFM020000_00001 - 0.013 15.6 0.2 0.017 15.2 0.2 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-NADH-PPase PF09297.11 AVFM020000_00001 - 0.014 15.0 2.0 0.31 10.7 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 AVFM020000_00001 - 0.016 15.2 1.0 0.027 14.5 1.0 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-DNL PF05180.12 AVFM020000_00001 - 0.017 15.1 0.6 0.035 14.0 0.6 1.5 1 1 0 1 1 1 0 DNL zinc finger Zn_ribbon_SprT PF17283.2 AVFM020000_00001 - 0.024 14.6 2.5 0.041 13.8 2.5 1.4 1 1 0 1 1 1 0 SprT-like zinc ribbon domain DpnI PF06044.12 AVFM020000_00001 - 0.033 13.8 0.4 0.042 13.5 0.4 1.1 1 0 0 1 1 1 0 Dam-replacing family zf-C4_Topoisom PF01396.19 AVFM020000_00001 - 0.033 14.0 1.9 3.9 7.3 0.1 2.5 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.6 AVFM020000_00001 - 0.042 13.6 3.5 3.5 7.5 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.9 AVFM020000_00001 - 0.046 14.0 2.6 1.3 9.3 0.2 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 AVFM020000_00001 - 0.07 12.6 3.3 0.68 9.5 3.3 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 AVFM020000_00001 - 0.079 13.0 0.7 0.1 12.6 0.7 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA GTP_EFTU PF00009.27 AVFM020000_00002 - 5.4e-59 199.0 0.3 7.6e-59 198.5 0.3 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 AVFM020000_00002 - 3.5e-23 81.7 0.0 9.7e-23 80.2 0.0 1.8 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_C PF00679.24 AVFM020000_00002 - 1.2e-16 60.5 0.0 3e-16 59.2 0.0 1.7 1 0 0 1 1 1 1 Elongation factor G C-terminus EFG_II PF14492.6 AVFM020000_00002 - 1.3e-12 47.6 0.1 2.9e-12 46.5 0.1 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II MMR_HSR1 PF01926.23 AVFM020000_00002 - 2e-06 27.9 0.1 4.6e-06 26.7 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 AVFM020000_00002 - 0.0011 19.3 0.0 0.0028 18.0 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RF3_C PF16658.5 AVFM020000_00002 - 0.015 15.1 0.0 0.031 14.1 0.0 1.5 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain Septin PF00735.18 AVFM020000_00002 - 0.021 14.1 0.1 0.038 13.3 0.1 1.3 1 0 0 1 1 1 0 Septin AIG1 PF04548.16 AVFM020000_00002 - 0.047 13.0 0.0 0.12 11.7 0.0 1.6 1 0 0 1 1 1 0 AIG1 family TnpV PF14198.6 AVFM020000_00003 - 2.8e-43 146.4 0.5 3.2e-43 146.2 0.5 1.0 1 0 0 1 1 1 1 Transposon-encoded protein TnpV VirB8 PF04335.13 AY190284_00001 - 2e-52 178.1 0.5 2.2e-52 178.0 0.5 1.0 1 0 0 1 1 1 1 VirB8 protein OppC_N PF12911.7 AY190284_00001 - 0.012 15.6 0.7 0.025 14.6 0.7 1.5 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 AY190285_00001 - 2.8e-55 187.3 1.9 4.6e-55 186.6 1.9 1.3 1 1 0 1 1 1 1 Conjugal transfer protein TrbI PF03743.14 AY190286_00001 - 5.8e-30 104.5 0.0 6.6e-30 104.3 0.0 1.0 1 0 0 1 1 1 1 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 AY190286_00001 - 0.0049 16.0 0.1 0.0062 15.7 0.1 1.1 1 0 0 1 1 1 1 HaeIII restriction endonuclease T2SSE PF00437.20 AY190287_00001 - 6.4e-54 182.8 0.0 7.4e-54 182.6 0.0 1.0 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 AY190287_00001 - 6.1e-05 23.6 0.0 0.00012 22.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter FtsK_SpoIIIE PF01580.18 AY190287_00001 - 0.00016 21.1 0.0 0.00025 20.5 0.0 1.2 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_7 PF12775.7 AY190287_00001 - 0.00022 20.8 0.0 0.00038 20.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_22 PF13401.6 AY190287_00001 - 0.0014 18.9 0.0 0.0026 18.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 AY190287_00001 - 0.0026 17.5 0.0 0.0053 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain DEAD PF00270.29 AY190287_00001 - 0.003 17.3 0.0 0.0047 16.7 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase TsaE PF02367.17 AY190287_00001 - 0.0037 17.3 0.0 0.0073 16.3 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 AY190287_00001 - 0.0049 15.9 0.0 0.0072 15.3 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain NACHT PF05729.12 AY190287_00001 - 0.0072 16.3 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Septin PF00735.18 AY190287_00001 - 0.0087 15.4 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 Septin ATPase_2 PF01637.18 AY190287_00001 - 0.0088 16.0 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 AY190287_00001 - 0.018 14.8 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain ResIII PF04851.15 AY190287_00001 - 0.019 15.0 0.0 0.041 13.9 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 AY190287_00001 - 0.022 13.7 0.0 0.034 13.1 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 AY190287_00001 - 0.023 14.8 0.1 0.046 13.8 0.1 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_29 PF13555.6 AY190287_00001 - 0.024 14.4 0.0 0.053 13.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 AY190287_00001 - 0.032 14.3 0.1 0.1 12.6 0.0 1.9 2 0 0 2 2 1 0 AAA domain Pox_A32 PF04665.12 AY190287_00001 - 0.035 13.5 0.0 0.056 12.9 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein RNA_helicase PF00910.22 AY190287_00001 - 0.037 14.4 0.0 0.11 13.0 0.0 1.8 2 0 0 2 2 2 0 RNA helicase ATP_bind_1 PF03029.17 AY190287_00001 - 0.037 13.8 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 AY190287_00001 - 0.039 13.2 0.0 0.069 12.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin PRK PF00485.18 AY190287_00001 - 0.052 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 AY190287_00001 - 0.063 11.9 0.0 0.086 11.4 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_16 PF13191.6 AY190287_00001 - 0.065 13.6 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Microtub_bd PF16796.5 AY190287_00001 - 0.085 12.8 0.4 0.22 11.4 0.3 1.7 1 1 0 1 1 1 0 Microtubule binding MobB PF03205.14 AY190287_00001 - 0.089 12.7 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Phage_pRha PF09669.10 AY190288_00001 - 1.8e-23 82.9 0.1 5.3e-23 81.4 0.1 1.8 1 0 0 1 1 1 1 Phage regulatory protein Rha (Phage_pRha) GTP_EFTU PF00009.27 AY190525_00001 - 9e-59 198.3 0.3 1.2e-58 197.8 0.3 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 AY190525_00001 - 2.6e-23 82.1 0.0 9.7e-23 80.2 0.0 1.9 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_C PF00679.24 AY190525_00001 - 1.1e-16 60.6 0.0 3e-16 59.2 0.0 1.7 1 0 0 1 1 1 1 Elongation factor G C-terminus EFG_II PF14492.6 AY190525_00001 - 1.3e-12 47.6 0.1 2.9e-12 46.5 0.1 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II MMR_HSR1 PF01926.23 AY190525_00001 - 1e-06 28.8 0.1 2.4e-06 27.6 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 AY190525_00001 - 0.0012 19.2 0.0 0.0028 18.0 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RF3_C PF16658.5 AY190525_00001 - 0.015 15.1 0.0 0.031 14.1 0.0 1.5 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain Septin PF00735.18 AY190525_00001 - 0.021 14.1 0.1 0.039 13.2 0.1 1.3 1 0 0 1 1 1 0 Septin AIG1 PF04548.16 AY190525_00001 - 0.043 13.1 0.0 0.11 11.8 0.0 1.6 1 0 0 1 1 1 0 AIG1 family Adenyl_transf PF04439.12 AY701528_00002 - 1.2e-115 385.5 6.3 1.3e-115 385.3 6.3 1.0 1 0 0 1 1 1 1 Streptomycin adenylyltransferase PcfJ PF14284.6 AY701528_00003 - 2.9e-05 24.0 2.2 2.9e-05 24.0 2.2 1.6 2 0 0 2 2 2 1 PcfJ-like protein Intein_splicing PF14890.6 AY701528_00003 - 0.0053 16.7 3.0 0.015 15.3 3.0 1.9 1 1 0 1 1 1 1 Intein splicing domain GTP_EFTU PF00009.27 AY701528_00005 - 8.9e-59 198.3 0.3 1.2e-58 197.8 0.3 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 AY701528_00005 - 2.6e-23 82.1 0.0 9.7e-23 80.2 0.0 1.9 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_C PF00679.24 AY701528_00005 - 8.5e-17 61.0 0.0 2.4e-16 59.6 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus EFG_II PF14492.6 AY701528_00005 - 1.3e-12 47.6 0.1 3e-12 46.5 0.1 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II MMR_HSR1 PF01926.23 AY701528_00005 - 9.7e-07 28.9 0.1 2.4e-06 27.6 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 AY701528_00005 - 0.0003 21.1 0.0 0.00072 19.9 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RF3_C PF16658.5 AY701528_00005 - 0.018 14.9 0.0 0.037 13.8 0.0 1.5 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain Septin PF00735.18 AY701528_00005 - 0.021 14.1 0.1 0.039 13.2 0.1 1.3 1 0 0 1 1 1 0 Septin AIG1 PF04548.16 AY701528_00005 - 0.043 13.1 0.0 0.11 11.8 0.0 1.6 1 0 0 1 1 1 0 AIG1 family DUF4111 PF13427.6 AY701528_00007 - 2.6e-26 91.8 0.0 1.1e-25 89.7 0.0 2.0 3 0 0 3 3 3 1 Domain of unknown function (DUF4111) Polbeta PF18765.1 AY701528_00007 - 1.1e-09 38.2 0.0 5.4e-09 36.0 0.0 2.0 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 AY701528_00007 - 3e-06 27.4 0.0 6.5e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 AY701528_00007 - 0.00019 21.4 0.0 0.0003 20.7 0.0 1.2 1 0 0 1 1 1 1 Adenylate cyclase NT domain AAA_18 PF13238.6 AY701528_00008 - 4.8e-14 53.0 0.0 6.3e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AY701528_00008 - 2.4e-10 40.8 0.0 2.9e-10 40.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain CPT PF07931.12 AY701528_00008 - 7.5e-10 38.9 0.0 1.4e-09 38.0 0.0 1.4 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 AY701528_00008 - 1.5e-07 30.9 0.0 3.6e-07 29.7 0.0 1.7 1 1 0 1 1 1 1 Zeta toxin AAA PF00004.29 AY701528_00008 - 1.1e-05 25.8 0.1 7.7e-05 23.1 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 AY701528_00008 - 2.1e-05 25.0 0.0 3.7e-05 24.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 AY701528_00008 - 0.00017 21.9 0.0 0.0004 20.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 AY701528_00008 - 0.00023 21.4 0.0 0.00099 19.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 AY701528_00008 - 0.0008 19.4 0.0 0.0013 18.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 AY701528_00008 - 0.0023 17.7 0.1 0.0057 16.4 0.0 1.6 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 AY701528_00008 - 0.0023 18.3 0.0 0.0042 17.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 AY701528_00008 - 0.0028 18.1 0.2 0.0032 18.0 0.2 1.5 1 1 0 1 1 1 1 ABC transporter KTI12 PF08433.10 AY701528_00008 - 0.0044 16.5 0.1 0.0092 15.5 0.0 1.5 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_16 PF13191.6 AY701528_00008 - 0.0046 17.4 0.0 0.0056 17.1 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.9 AY701528_00008 - 0.0048 16.2 0.4 0.0056 16.0 0.4 1.5 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) ATPase_2 PF01637.18 AY701528_00008 - 0.0076 16.2 0.4 2.2 8.2 0.0 2.1 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea APS_kinase PF01583.20 AY701528_00008 - 0.0079 16.1 0.0 0.18 11.7 0.0 2.1 2 0 0 2 2 2 1 Adenylylsulphate kinase Rad17 PF03215.15 AY701528_00008 - 0.0086 16.0 0.0 0.039 13.9 0.0 1.9 2 0 0 2 2 2 1 Rad17 P-loop domain T2SSE PF00437.20 AY701528_00008 - 0.0086 15.2 0.0 0.016 14.3 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_30 PF13604.6 AY701528_00008 - 0.0092 15.7 0.1 0.016 15.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 AY701528_00008 - 0.0098 15.3 1.3 0.017 14.5 0.1 1.9 2 0 0 2 2 2 1 KaiC AAA_24 PF13479.6 AY701528_00008 - 0.0099 15.6 0.8 0.014 15.2 0.8 1.7 1 1 0 1 1 1 1 AAA domain Ploopntkinase1 PF18748.1 AY701528_00008 - 0.011 15.3 0.1 0.46 10.0 0.0 2.1 2 0 0 2 2 2 0 P-loop Nucleotide Kinase1 SRP54 PF00448.22 AY701528_00008 - 0.014 15.1 0.2 0.031 13.9 0.1 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DnaB_C PF03796.15 AY701528_00008 - 0.016 14.6 0.6 0.13 11.6 0.0 2.0 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain NTPase_1 PF03266.15 AY701528_00008 - 0.021 14.8 0.6 0.049 13.5 0.3 1.7 2 0 0 2 2 2 0 NTPase TIP49 PF06068.13 AY701528_00008 - 0.034 13.3 0.3 0.11 11.6 0.0 1.8 2 0 0 2 2 2 0 TIP49 P-loop domain Sigma54_activat PF00158.26 AY701528_00008 - 0.038 13.7 0.0 0.066 12.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain dNK PF01712.19 AY701528_00008 - 0.039 13.8 0.2 0.94 9.3 0.0 2.1 2 0 0 2 2 2 0 Deoxynucleoside kinase Cytidylate_kin2 PF13189.6 AY701528_00008 - 0.055 13.6 1.9 2.5 8.2 0.1 2.2 1 1 1 2 2 2 0 Cytidylate kinase-like family PhoH PF02562.16 AY701528_00008 - 0.065 12.7 0.1 0.14 11.5 0.1 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_11 PF13086.6 AY701528_00008 - 0.067 13.0 1.4 0.12 12.1 1.4 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 AY701528_00008 - 0.082 13.3 0.0 0.16 12.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.6 AY701528_00008 - 0.084 12.4 0.2 0.5 9.9 0.1 2.2 3 0 0 3 3 3 0 AAA domain MKT1_N PF12247.8 AY701528_00008 - 0.088 13.2 0.0 0.27 11.6 0.0 1.9 1 1 0 1 1 1 0 Temperature dependent protein affecting M2 dsRNA replication APH PF01636.23 AY701528_00009 - 1.2e-15 58.1 0.0 7.6e-15 55.5 0.0 1.8 1 1 1 2 2 2 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 AY701528_00009 - 1.8e-09 37.5 5.3 3.4e-09 36.6 4.7 1.7 1 1 0 1 1 1 1 Choline/ethanolamine kinase EcKinase PF02958.20 AY701528_00009 - 0.00022 20.7 0.7 0.00022 20.7 0.7 2.1 2 1 1 3 3 3 1 Ecdysteroid kinase Fructosamin_kin PF03881.14 AY701528_00009 - 0.023 13.9 0.6 0.05 12.8 0.3 1.7 2 0 0 2 2 2 0 Fructosamine kinase Ribosomal_S13 PF00416.22 AY701528_00009 - 0.029 14.8 1.8 0.076 13.4 0.1 2.4 2 1 0 3 3 3 0 Ribosomal protein S13/S18 DUF4111 PF13427.6 AY701528_00010 - 1.6e-23 82.9 0.0 5.6e-23 81.1 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4111) NTP_transf_2 PF01909.23 AY701528_00010 - 1.2e-06 28.7 0.6 2.4e-06 27.7 0.5 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 AY701528_00010 - 0.00032 20.7 0.1 0.00088 19.3 0.1 1.7 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Adenyl_cycl_N PF12633.7 AY701528_00010 - 0.022 14.6 0.0 0.035 14.0 0.0 1.2 1 0 0 1 1 1 0 Adenylate cyclase NT domain Acetyltransf_1 PF00583.25 AY701528_00011 - 9e-17 61.4 0.0 1.1e-16 61.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 AY701528_00011 - 1.4e-09 38.0 0.0 1.8e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 AY701528_00011 - 4.8e-08 33.3 0.1 7.8e-08 32.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AY701528_00011 - 0.0013 18.7 0.0 0.002 18.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 AY701528_00011 - 0.0045 17.1 0.0 0.0078 16.3 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 AY701528_00011 - 0.007 17.0 0.0 0.0082 16.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain MOZ_SAS PF01853.18 AY701528_00011 - 0.034 13.8 0.0 0.04 13.6 0.0 1.3 1 1 0 1 1 1 0 MOZ/SAS family APH PF01636.23 AY701528_00012 - 2.3e-23 83.4 0.0 3e-23 83.0 0.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 AY701528_00012 - 0.0019 17.8 1.2 0.0046 16.6 1.2 1.6 1 0 0 1 1 1 1 Choline/ethanolamine kinase HTH_23 PF13384.6 AY701528_00013 - 0.0036 17.1 0.0 0.045 13.6 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_17 PF12728.7 AY701528_00013 - 0.046 13.9 0.7 1.2 9.4 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AY701528_00013 - 0.068 12.9 0.0 0.2 11.4 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.6 AY701528_00013 - 0.097 12.8 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HxlR PF01638.17 AY701528_00014 - 2.7e-22 78.4 0.0 3.2e-22 78.2 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_5 PF01022.20 AY701528_00014 - 0.00012 21.9 0.0 0.00021 21.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 AY701528_00014 - 0.00023 21.1 0.0 0.00036 20.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 AY701528_00014 - 0.00035 20.4 0.0 0.00059 19.7 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 AY701528_00014 - 0.00061 19.6 0.0 0.00099 19.0 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.14 AY701528_00014 - 0.0015 18.5 0.1 0.0024 17.8 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 AY701528_00014 - 0.0064 16.6 0.0 0.0089 16.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Putative_PNPOx PF01243.20 AY701528_00015 - 4.3e-12 46.0 0.0 6.2e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 AY701528_00015 - 3.7e-06 26.6 0.0 4.1e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like Pyridox_ox_2 PF12900.7 AY701528_00015 - 0.063 13.3 0.0 0.072 13.1 0.0 1.3 1 1 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase IstB_IS21 PF01695.17 AY701528_00016 - 1.2e-58 197.8 1.9 3.6e-58 196.2 0.2 1.9 1 1 1 2 2 2 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 AY701528_00016 - 1.3e-08 35.0 0.6 1.3e-08 35.0 0.6 1.6 2 0 0 2 2 2 1 Bacterial dnaA protein RNA_helicase PF00910.22 AY701528_00016 - 1.7e-05 25.1 0.4 0.00047 20.5 0.0 2.3 2 0 0 2 2 2 1 RNA helicase PhoH PF02562.16 AY701528_00016 - 3.5e-05 23.4 0.0 8.2e-05 22.2 0.0 1.6 1 1 0 1 1 1 1 PhoH-like protein AAA_22 PF13401.6 AY701528_00016 - 5.3e-05 23.5 0.2 0.029 14.6 0.1 2.6 1 1 1 2 2 2 1 AAA domain AAA PF00004.29 AY701528_00016 - 6.8e-05 23.3 0.1 0.00012 22.5 0.1 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 AY701528_00016 - 7.7e-05 22.5 0.1 0.0051 16.5 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.6 AY701528_00016 - 8.1e-05 23.1 0.0 0.00015 22.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain CbiA PF01656.23 AY701528_00016 - 0.00047 20.2 0.0 0.00079 19.5 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.6 AY701528_00016 - 0.00062 19.5 0.7 0.0016 18.2 0.7 1.8 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 AY701528_00016 - 0.00073 19.6 0.3 0.00073 19.6 0.3 1.9 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 AY701528_00016 - 0.00099 18.7 0.1 0.0027 17.3 0.0 1.7 2 0 0 2 2 2 1 P-loop containing dynein motor region AFG1_ATPase PF03969.16 AY701528_00016 - 0.0026 16.7 0.1 0.0036 16.2 0.1 1.2 1 0 0 1 1 1 1 AFG1-like ATPase NTPase_1 PF03266.15 AY701528_00016 - 0.0033 17.4 1.3 0.14 12.1 0.1 2.4 1 1 1 2 2 2 1 NTPase NACHT PF05729.12 AY701528_00016 - 0.0033 17.4 0.2 0.014 15.4 0.1 2.1 1 1 0 1 1 1 1 NACHT domain AAA_25 PF13481.6 AY701528_00016 - 0.0075 15.9 0.3 0.077 12.6 0.0 2.5 1 1 2 3 3 3 1 AAA domain AAA_5 PF07728.14 AY701528_00016 - 0.014 15.4 0.1 0.045 13.7 0.1 2.0 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 AY701528_00016 - 0.016 15.1 1.3 0.037 13.9 0.0 2.1 2 1 1 3 3 2 0 RsgA GTPase Roc PF08477.13 AY701528_00016 - 0.032 14.5 0.0 0.088 13.0 0.0 1.8 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_33 PF13671.6 AY701528_00016 - 0.045 13.9 0.0 0.075 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 AY701528_00016 - 0.072 12.8 0.2 0.56 10.0 0.0 2.3 2 0 0 2 2 2 0 P-loop containing region of AAA domain rve PF00665.26 AY701528_00017 - 1.7e-13 50.8 0.0 3.4e-13 49.8 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain Phage_portal PF04860.12 AY701528_00017 - 0.0087 15.3 0.8 0.18 11.0 0.0 2.2 1 1 1 2 2 2 2 Phage portal protein DDE_Tnp_IS1595 PF12762.7 AY701528_00018 - 3.8e-15 56.2 1.0 6.5e-15 55.5 1.0 1.3 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 AY701528_00018 - 1.2e-06 28.4 1.3 3e-06 27.1 1.3 1.7 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 AY701528_00018 - 0.0007 19.3 6.9 0.0007 19.3 6.9 1.9 2 0 0 2 2 2 1 InsA N-terminal domain HTH_30 PF13556.6 AY701528_00018 - 0.013 15.3 0.0 0.025 14.4 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_23 PF13384.6 AY701528_00018 - 0.016 15.0 0.0 0.036 13.9 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain PhnJ PF06007.11 AY701528_00018 - 0.061 12.3 0.1 0.12 11.3 0.1 1.4 1 1 0 1 1 1 0 Phosphonate metabolism protein PhnJ Lar_restr_allev PF14354.6 AY701528_00018 - 0.062 13.7 3.3 0.063 13.7 1.9 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 AY701528_00018 - 0.063 13.4 0.7 3.2 7.9 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.10 AY701528_00018 - 0.069 12.9 8.5 0.54 10.0 0.2 2.7 3 0 0 3 3 3 0 A2L zinc ribbon domain AAA_18 PF13238.6 AY701528_00019 - 1.9e-14 54.3 0.0 2.6e-14 53.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AY701528_00019 - 3.6e-10 40.2 0.0 5.2e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain CPT PF07931.12 AY701528_00019 - 1.6e-09 37.9 0.0 3.1e-09 36.9 0.0 1.5 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 AY701528_00019 - 1.6e-09 37.3 0.1 3.3e-09 36.3 0.1 1.6 1 1 0 1 1 1 1 Zeta toxin AAA_28 PF13521.6 AY701528_00019 - 7.3e-06 26.3 0.3 3.1e-05 24.3 0.0 1.9 1 1 0 2 2 2 1 AAA domain AAA PF00004.29 AY701528_00019 - 1.1e-05 25.9 0.0 4.1e-05 24.0 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 AY701528_00019 - 1.8e-05 25.0 0.0 7.5e-05 23.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 AY701528_00019 - 5.3e-05 23.7 0.1 0.00021 21.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AY701528_00019 - 0.00029 21.3 0.0 0.00035 21.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.9 AY701528_00019 - 0.0011 18.3 0.2 0.0013 18.0 0.2 1.5 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 AY701528_00019 - 0.0014 18.7 0.0 0.0022 18.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 AY701528_00019 - 0.0015 18.9 0.2 0.0032 17.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain KTI12 PF08433.10 AY701528_00019 - 0.0018 17.8 0.1 0.0044 16.5 0.0 1.7 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_30 PF13604.6 AY701528_00019 - 0.0021 17.8 0.1 0.0039 16.9 0.1 1.5 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 AY701528_00019 - 0.0043 17.6 0.0 0.0046 17.5 0.0 1.5 1 1 0 1 1 1 1 ABC transporter TIP49 PF06068.13 AY701528_00019 - 0.0046 16.2 0.3 0.015 14.5 0.0 1.8 2 0 0 2 2 2 1 TIP49 P-loop domain T2SSE PF00437.20 AY701528_00019 - 0.0056 15.8 0.0 0.0086 15.2 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_24 PF13479.6 AY701528_00019 - 0.0071 16.1 0.1 0.0082 15.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 AY701528_00019 - 0.0082 15.5 0.7 0.018 14.4 0.1 1.8 2 0 0 2 2 2 1 KaiC APS_kinase PF01583.20 AY701528_00019 - 0.0099 15.8 0.0 0.073 13.0 0.0 2.0 1 1 1 2 2 2 1 Adenylylsulphate kinase AAA_25 PF13481.6 AY701528_00019 - 0.013 15.1 0.1 0.034 13.7 0.1 1.7 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 AY701528_00019 - 0.014 15.3 1.2 0.027 14.4 0.2 1.8 2 0 0 2 2 2 0 NTPase DnaB_C PF03796.15 AY701528_00019 - 0.017 14.5 0.7 0.055 12.8 0.0 1.9 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain SRP54 PF00448.22 AY701528_00019 - 0.017 14.7 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RuvB_N PF05496.12 AY701528_00019 - 0.023 14.5 0.0 0.066 12.9 0.0 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_11 PF13086.6 AY701528_00019 - 0.024 14.4 1.4 0.066 13.0 1.4 1.8 1 1 0 1 1 1 0 AAA domain Hydin_ADK PF17213.3 AY701528_00019 - 0.025 14.9 0.2 0.025 14.9 0.2 1.7 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain AAA_7 PF12775.7 AY701528_00019 - 0.025 14.1 0.6 0.1 12.1 0.0 2.0 2 1 0 2 2 2 0 P-loop containing dynein motor region Viral_helicase1 PF01443.18 AY701528_00019 - 0.027 14.2 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ArsA_ATPase PF02374.15 AY701528_00019 - 0.035 13.3 0.1 0.088 12.0 0.0 1.8 2 0 0 2 2 2 0 Anion-transporting ATPase NACHT PF05729.12 AY701528_00019 - 0.035 14.0 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Sigma54_activat PF00158.26 AY701528_00019 - 0.041 13.6 0.0 0.077 12.7 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain Rad17 PF03215.15 AY701528_00019 - 0.043 13.7 0.0 0.13 12.2 0.0 1.7 2 0 0 2 2 2 0 Rad17 P-loop domain MKT1_N PF12247.8 AY701528_00019 - 0.044 14.2 0.0 0.099 13.0 0.0 1.8 1 1 0 1 1 1 0 Temperature dependent protein affecting M2 dsRNA replication NB-ARC PF00931.22 AY701528_00019 - 0.047 12.9 0.0 0.087 12.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 AY701528_00019 - 0.059 13.3 0.1 3.8 7.4 0.0 2.1 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 AY701528_00019 - 0.067 13.6 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase PG_binding_3 PF09374.10 AY701528_00019 - 0.071 13.4 0.1 1.1 9.5 0.0 2.4 2 1 1 3 3 2 0 Predicted Peptidoglycan domain IPT PF01745.16 AY701528_00019 - 0.077 12.4 0.2 0.25 10.7 0.1 1.8 2 0 0 2 2 2 0 Isopentenyl transferase PhoH PF02562.16 AY701528_00019 - 0.086 12.3 0.1 0.16 11.4 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.17 AY701528_00019 - 0.088 12.5 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ATP-synt_ab PF00006.25 AY701528_00019 - 0.094 12.4 0.0 0.1 12.2 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain APH PF01636.23 AY701528_00020 - 8.7e-24 84.8 0.0 1.3e-23 84.2 0.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 AY701528_00020 - 2.9e-06 26.7 0.1 1e-05 24.9 0.1 1.7 1 1 0 1 1 1 1 Fructosamine kinase Choline_kinase PF01633.20 AY701528_00020 - 0.00018 21.2 0.0 0.00027 20.6 0.0 1.3 1 0 0 1 1 1 1 Choline/ethanolamine kinase APH_6_hur PF04655.14 AY701528_00020 - 0.014 14.8 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 AY701528_00020 - 0.044 13.4 0.4 0.072 12.7 0.4 1.3 1 0 0 1 1 1 0 TMEM95 family Peptidase_C15 PF01470.17 AY701528_00021 - 4.2e-51 174.0 0.1 4.8e-51 173.8 0.1 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase Adenyl_transf PF04439.12 AY701528_00022 - 4.8e-56 189.9 1.4 5.9e-56 189.6 1.4 1.0 1 0 0 1 1 1 1 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 AY701528_00023 - 5.6e-20 71.7 0.1 7.6e-20 71.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 AY701528_00023 - 1.7e-13 50.8 0.1 2.7e-13 50.1 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 AY701528_00023 - 2.7e-12 46.7 0.0 3.7e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 AY701528_00023 - 2e-09 37.8 1.3 2.4e-09 37.5 1.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 AY701528_00023 - 0.0015 19.2 0.0 0.0019 18.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 AY701528_00023 - 0.0019 18.3 0.0 0.0038 17.3 0.0 1.6 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 AY701528_00023 - 0.011 15.8 0.0 0.044 13.9 0.0 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain PanZ PF12568.8 AY701528_00023 - 0.031 14.0 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ FR47 PF08445.10 AY701528_00023 - 0.038 14.0 0.0 0.064 13.2 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein APH PF01636.23 AY701528_00024 - 2.8e-26 92.9 0.0 3.2e-26 92.7 0.0 1.0 1 0 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 AY701528_00024 - 0.0021 17.7 0.0 0.0032 17.1 0.0 1.4 1 1 0 1 1 1 1 Choline/ethanolamine kinase RIO1 PF01163.22 AY701528_00024 - 0.019 14.5 0.0 2.3 7.8 0.0 2.2 2 0 0 2 2 2 0 RIO1 family Y1_Tnp PF01797.16 AY701528_00025 - 1.5e-37 128.4 1.5 2e-37 128.0 1.5 1.2 1 0 0 1 1 1 1 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 AY701528_00026 - 4.6e-23 80.9 0.3 9.6e-23 79.9 0.3 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 AY701528_00026 - 6.7e-13 48.9 2.3 6.7e-13 48.9 2.3 2.0 2 1 0 2 2 2 1 Probable transposase HTH_OrfB_IS605 PF12323.8 AY701528_00026 - 3.3e-09 36.1 2.5 7.3e-09 35.0 2.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4428 PF14471.6 AY701528_00026 - 0.012 15.6 0.4 0.045 13.7 0.4 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) Prok-RING_1 PF14446.6 AY701528_00026 - 0.018 15.0 0.5 0.032 14.1 0.5 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Methyltr_RsmF_N PF17125.5 AY701528_00026 - 0.051 14.1 2.4 0.098 13.2 0.1 2.4 2 0 0 2 2 2 0 N-terminal domain of 16S rRNA methyltransferase RsmF Rpr2 PF04032.16 AY701528_00026 - 0.064 13.5 4.2 6.7 7.1 0.2 3.3 2 1 1 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain NPA PF16469.5 AY701528_00027 - 0.057 14.0 6.1 0.06 13.9 6.1 1.0 1 0 0 1 1 1 0 Nematode polyprotein allergen ABA-1 DUF1272 PF06906.11 AY701528_00028 - 0.0094 16.0 4.2 0.016 15.3 4.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) Papo_T_antigen PF02380.15 AY701528_00028 - 0.011 15.8 6.4 0.017 15.2 6.4 1.4 1 1 0 1 1 1 0 T-antigen specific domain AAA_31 PF13614.6 AY701528_00029 - 7.9e-05 22.7 0.1 7.9e-05 22.7 0.1 1.0 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 AY701528_00029 - 0.0032 17.5 0.0 0.0033 17.5 0.0 1.0 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 AY701528_00029 - 0.037 13.5 0.1 0.038 13.4 0.1 1.0 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase Cas_DxTHG PF09455.10 AY701528_00030 - 0.045 13.3 3.0 0.075 12.6 1.7 1.8 1 1 1 2 2 2 0 CRISPR-associated (Cas) DxTHG family adh_short PF00106.25 AY701528_00030 - 0.071 12.6 0.0 0.084 12.3 0.0 1.1 1 0 0 1 1 1 0 short chain dehydrogenase Mur_ligase_C PF02875.21 AY701528_00030 - 0.078 13.2 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Mur ligase family, glutamate ligase domain Eco57I PF07669.11 AY701528_00032 - 1.9e-05 25.1 0.2 5.9e-05 23.5 0.2 1.9 1 0 0 1 1 1 1 Eco57I restriction-modification methylase MTS PF05175.14 AY701528_00032 - 0.0027 17.3 0.0 0.0069 16.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase small domain DUF2362 PF10154.9 AY730723_00001 - 0.00027 20.0 30.9 0.00027 20.0 30.9 2.0 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2362) ORC4_C PF14629.6 AY730723_00001 - 0.0033 16.8 1.8 0.0033 16.8 1.8 2.2 3 1 0 3 3 3 1 Origin recognition complex (ORC) subunit 4 C-terminus MAF_flag10 PF01973.18 CM007884_00001 - 1.3e-43 148.6 1.0 2.7e-43 147.6 1.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF115 KASH_CCD PF14662.6 CM007884_00001 - 0.0075 16.1 0.5 0.037 13.9 0.5 2.1 1 1 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH Fib_alpha PF08702.10 CM007884_00001 - 0.072 13.3 4.3 0.33 11.2 2.8 2.3 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family MAF_flag10 PF01973.18 CM007884_00002 - 1.5e-42 145.2 1.3 2.9e-42 144.3 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function DUF115 PspA_IM30 PF04012.12 CM007884_00002 - 0.054 13.1 2.0 0.084 12.4 2.0 1.2 1 0 0 1 1 1 0 PspA/IM30 family FliE PF02049.18 CM007884_00002 - 0.086 13.0 0.1 0.16 12.1 0.1 1.4 1 0 0 1 1 1 0 Flagellar hook-basal body complex protein FliE Mur_ligase_M PF08245.12 CM007885_00002 - 3.6e-20 72.8 0.8 1.9e-19 70.4 0.1 2.4 2 1 0 2 2 2 1 Mur ligase middle domain Mur_ligase_C PF02875.21 CM007885_00002 - 0.0043 17.3 0.0 0.011 16.0 0.0 1.7 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain Abhydrolase_1 PF00561.20 CM007885_00003 - 5.1e-09 36.2 0.0 3.3e-05 23.7 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CM007885_00003 - 6.4e-07 30.2 0.0 2.4e-06 28.3 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 CM007885_00003 - 2.5e-05 23.7 0.0 3.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 FSH1 PF03959.13 CM007885_00003 - 0.0031 17.2 0.1 0.26 10.9 0.0 2.5 2 1 0 2 2 2 1 Serine hydrolase (FSH1) Lipase_3 PF01764.25 CM007885_00003 - 0.018 14.9 0.0 0.051 13.5 0.0 1.7 2 0 0 2 2 2 0 Lipase (class 3) Abhydrolase_4 PF08386.10 CM007885_00003 - 0.053 13.6 0.0 0.083 13.0 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein Rota_VP2 PF05087.12 CM007885_00003 - 0.056 11.6 0.0 0.069 11.3 0.0 1.1 1 0 0 1 1 1 0 Rotavirus VP2 protein PhdYeFM_antitox PF02604.19 CM007885_00004 - 1.2e-08 34.6 0.2 1.4e-08 34.4 0.2 1.2 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system Dala_Dala_lig_C PF07478.13 CM007885_00005 - 2.6e-32 112.1 0.1 3.6e-32 111.6 0.1 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 CM007885_00005 - 1.3e-20 73.8 0.0 1.1e-19 70.8 0.0 2.2 2 1 0 2 2 2 1 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 CM007885_00005 - 1.2e-05 25.0 0.0 0.0089 15.6 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_4 PF13535.6 CM007885_00005 - 0.00023 20.8 0.0 0.00062 19.4 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 CM007885_00005 - 0.0015 18.6 0.1 0.11 12.5 0.1 2.9 1 1 1 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 CM007885_00005 - 0.069 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain HHH_5 PF14520.6 CM007885_00006 - 2.8e-15 56.6 0.0 6.7e-15 55.4 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain RuvA_N PF01330.21 CM007885_00006 - 4.3e-10 39.5 0.1 3.1e-09 36.8 0.1 2.1 2 0 0 2 2 2 1 RuvA N terminal domain RuvA_C PF07499.13 CM007885_00006 - 2.2e-08 34.4 2.0 4.2e-08 33.5 2.0 1.5 1 0 0 1 1 1 1 RuvA, C-terminal domain HHH PF00633.23 CM007885_00006 - 4.7e-07 29.4 0.1 0.0027 17.5 0.2 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 CM007885_00006 - 5.6e-05 23.5 0.1 0.03 14.7 0.0 2.3 1 1 1 2 2 2 2 Ribosomal protein S13/S18 HHH_2 PF12826.7 CM007885_00006 - 0.00086 19.4 0.0 1.8 8.7 0.0 2.6 1 1 1 2 2 2 2 Helix-hairpin-helix motif HHH_3 PF12836.7 CM007885_00006 - 0.00095 19.4 0.0 0.033 14.5 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 CM007885_00006 - 0.0011 19.5 0.7 0.0077 16.8 0.2 2.2 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 CM007885_00006 - 0.0083 16.4 0.0 0.43 10.9 0.0 2.3 2 0 0 2 2 2 1 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 CM007885_00006 - 0.019 15.3 0.1 0.19 12.1 0.1 2.6 2 1 0 2 2 2 0 IMS family HHH motif HHH_8 PF14716.6 CM007885_00006 - 0.022 15.1 0.2 0.45 10.9 0.1 2.4 1 1 1 2 2 2 0 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 CM007885_00006 - 0.032 14.1 0.0 8.3 6.3 0.0 2.3 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda FapA PF03961.13 CM007885_00007 - 3.5e-30 105.0 37.0 5.2e-30 104.5 36.7 1.4 1 1 0 1 1 1 1 Flagellar Assembly Protein A FAM76 PF16046.5 CM007885_00007 - 0.027 13.8 8.1 0.061 12.7 8.1 1.6 1 0 0 1 1 1 0 FAM76 protein MurJ PF03023.14 CM007885_00008 - 1e-91 307.8 60.1 1.7e-91 307.1 60.1 1.3 1 1 0 1 1 1 1 Lipid II flippase MurJ tRNA-synt_1e PF01406.19 CM007885_00009 - 1e-109 366.5 0.6 1.7e-109 365.8 0.6 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 CM007885_00009 - 9e-14 51.0 1.5 3.4e-07 29.3 0.0 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (M) DALR_2 PF09190.11 CM007885_00009 - 1.1e-07 32.2 4.6 7.2e-06 26.4 1.4 2.8 2 0 0 2 2 2 2 DALR domain tRNA-synt_1 PF00133.22 CM007885_00009 - 1.6e-06 26.7 0.0 0.00047 18.5 0.0 2.6 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 CM007885_00009 - 0.0002 20.4 0.2 0.02 13.8 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 CM007885_00009 - 0.0023 18.0 0.0 0.0076 16.3 0.0 1.9 1 0 0 1 1 1 1 Sgs1 RecQ helicase DUF4919 PF16266.5 CM007885_00009 - 0.013 15.4 0.0 0.033 14.1 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4919) ABC_membrane PF00664.23 CM007885_00010 - 4.4e-48 164.3 8.4 5.8e-48 163.9 8.4 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CM007885_00010 - 4.9e-31 108.1 0.1 9e-31 107.2 0.1 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CM007885_00010 - 6e-10 38.9 5.9 1.4e-08 34.5 5.9 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CM007885_00010 - 0.00081 19.3 0.2 0.0019 18.1 0.1 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 CM007885_00010 - 0.0025 18.1 0.4 0.027 14.7 0.4 2.4 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 CM007885_00010 - 0.0056 16.9 0.2 0.046 14.0 0.2 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 CM007885_00010 - 0.0098 15.6 0.1 0.04 13.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain ATP-synt_I PF03899.15 CM007885_00010 - 0.024 15.0 0.3 0.024 15.0 0.3 3.4 3 0 0 3 3 3 0 ATP synthase I chain AAA_16 PF13191.6 CM007885_00010 - 0.035 14.5 0.0 0.094 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 CM007885_00010 - 0.094 12.5 0.7 0.19 11.5 0.1 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain DHO_dh PF01180.21 CM007885_00011 - 2.7e-72 243.5 0.1 3.1e-72 243.3 0.1 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase ThiI PF02568.14 CM007885_00011 - 0.031 13.9 0.0 0.086 12.4 0.0 1.7 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 CM007885_00011 - 0.069 12.6 0.1 1.4 8.3 0.0 2.1 2 0 0 2 2 2 0 PcrB family Peptidase_M16_C PF05193.21 CM007885_00012 - 7.8e-31 107.5 1.1 1.1e-29 103.8 0.3 2.4 3 0 0 3 3 3 1 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 CM007885_00012 - 8.6e-25 87.5 0.0 1.9e-24 86.3 0.0 1.5 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) LuxS PF02664.15 CM007885_00012 - 0.022 14.4 0.0 5.3 6.7 0.0 2.4 2 0 0 2 2 2 0 S-Ribosylhomocysteinase (LuxS) DHDPS PF00701.22 CM007885_00013 - 1.8e-88 296.0 0.2 2.3e-88 295.7 0.2 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family CTK3 PF12243.8 CM007885_00013 - 0.068 13.2 0.0 0.32 11.0 0.0 2.0 2 0 0 2 2 2 0 CTD kinase subunit gamma CTK3 adh_short_C2 PF13561.6 CM007885_00014 - 3.4e-59 200.2 1.1 4.2e-59 200.0 1.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CM007885_00014 - 1.6e-33 115.8 2.4 1.9e-33 115.6 2.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CM007885_00014 - 0.00012 22.1 0.1 0.00025 21.0 0.1 1.5 1 1 0 1 1 1 1 KR domain RRM_3 PF08777.11 CM007885_00014 - 0.016 15.3 0.3 3.1 7.9 0.2 2.3 2 0 0 2 2 2 0 RNA binding motif Lactamase_B PF00753.27 CM007885_00016 - 1.7e-26 93.4 0.0 2.2e-26 93.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 CM007885_00016 - 0.00014 21.5 0.2 0.00018 21.1 0.2 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain NAD_synthase PF02540.17 CM007885_00017 - 3.7e-79 265.2 0.1 4.2e-79 265.1 0.1 1.0 1 0 0 1 1 1 1 NAD synthase RPAP1_N PF08621.10 CM007885_00017 - 6.6e-06 25.8 0.6 0.00013 21.7 0.7 2.3 2 0 0 2 2 2 1 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 CM007885_00017 - 1.2e-05 24.3 0.0 0.00092 18.1 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 CM007885_00017 - 0.00031 20.3 0.0 0.0011 18.5 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 CM007885_00017 - 0.0013 18.5 0.0 0.002 17.8 0.0 1.4 1 1 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 CM007885_00017 - 0.04 13.7 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 PP-loop family LpxK PF02606.14 CM007885_00018 - 1.6e-38 132.6 0.0 5.4e-28 98.0 0.0 2.0 1 1 1 2 2 2 2 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 CM007885_00018 - 0.051 14.0 0.2 0.16 12.4 0.1 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PALP PF00291.25 CM007885_00019 - 1.4e-09 37.8 0.0 2.3e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 CM007885_00019 - 2.1e-07 31.1 0.3 1.2e-06 28.6 0.0 2.4 3 0 0 3 3 3 1 Threonine synthase N terminus CbiA PF01656.23 CM007885_00019 - 0.039 14.0 0.0 0.59 10.2 0.0 2.6 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain CTP_transf_3 PF02348.19 CM007885_00020 - 9.6e-46 156.5 0.3 1.2e-45 156.1 0.3 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 CM007885_00020 - 1.3e-05 25.6 0.0 1.6e-05 25.4 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain HTH_19 PF12844.7 CM007885_00020 - 0.0091 16.0 2.0 0.047 13.7 0.4 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain Mur_ligase_M PF08245.12 CM007886_00002 - 3.6e-20 72.8 0.8 1.9e-19 70.4 0.1 2.4 2 1 0 2 2 2 1 Mur ligase middle domain Mur_ligase_C PF02875.21 CM007886_00002 - 0.0043 17.3 0.0 0.011 16.0 0.0 1.7 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain Abhydrolase_1 PF00561.20 CM007886_00003 - 5.1e-09 36.2 0.0 3.3e-05 23.7 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 CM007886_00003 - 6.4e-07 30.2 0.0 2.4e-06 28.3 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 CM007886_00003 - 2.5e-05 23.7 0.0 3.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 FSH1 PF03959.13 CM007886_00003 - 0.0031 17.2 0.1 0.26 10.9 0.0 2.5 2 1 0 2 2 2 1 Serine hydrolase (FSH1) Lipase_3 PF01764.25 CM007886_00003 - 0.018 14.9 0.0 0.051 13.5 0.0 1.7 2 0 0 2 2 2 0 Lipase (class 3) Abhydrolase_4 PF08386.10 CM007886_00003 - 0.053 13.6 0.0 0.083 13.0 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein Rota_VP2 PF05087.12 CM007886_00003 - 0.056 11.6 0.0 0.069 11.3 0.0 1.1 1 0 0 1 1 1 0 Rotavirus VP2 protein PhdYeFM_antitox PF02604.19 CM007886_00004 - 1.2e-08 34.6 0.2 1.4e-08 34.4 0.2 1.2 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system Dala_Dala_lig_C PF07478.13 CM007886_00005 - 2.6e-32 112.1 0.1 3.6e-32 111.6 0.1 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 CM007886_00005 - 1.3e-20 73.8 0.0 1.1e-19 70.8 0.0 2.2 2 1 0 2 2 2 1 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 CM007886_00005 - 1.2e-05 25.0 0.0 0.0089 15.6 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_4 PF13535.6 CM007886_00005 - 0.00023 20.8 0.0 0.00062 19.4 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 CM007886_00005 - 0.0015 18.6 0.1 0.11 12.5 0.1 2.9 1 1 1 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 CM007886_00005 - 0.069 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain HHH_5 PF14520.6 CM007886_00006 - 2.8e-15 56.6 0.0 6.7e-15 55.4 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain RuvA_N PF01330.21 CM007886_00006 - 4.3e-10 39.5 0.1 3.1e-09 36.8 0.1 2.1 2 0 0 2 2 2 1 RuvA N terminal domain RuvA_C PF07499.13 CM007886_00006 - 2.2e-08 34.4 2.0 4.2e-08 33.5 2.0 1.5 1 0 0 1 1 1 1 RuvA, C-terminal domain HHH PF00633.23 CM007886_00006 - 4.7e-07 29.4 0.1 0.0027 17.5 0.2 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 CM007886_00006 - 5.6e-05 23.5 0.1 0.03 14.7 0.0 2.3 1 1 1 2 2 2 2 Ribosomal protein S13/S18 HHH_2 PF12826.7 CM007886_00006 - 0.00086 19.4 0.0 1.8 8.7 0.0 2.6 1 1 1 2 2 2 2 Helix-hairpin-helix motif HHH_3 PF12836.7 CM007886_00006 - 0.00095 19.4 0.0 0.033 14.5 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 CM007886_00006 - 0.0011 19.5 0.7 0.0077 16.8 0.2 2.2 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 CM007886_00006 - 0.0083 16.4 0.0 0.43 10.9 0.0 2.3 2 0 0 2 2 2 1 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 CM007886_00006 - 0.019 15.3 0.1 0.19 12.1 0.1 2.6 2 1 0 2 2 2 0 IMS family HHH motif HHH_8 PF14716.6 CM007886_00006 - 0.022 15.1 0.2 0.45 10.9 0.1 2.4 1 1 1 2 2 2 0 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 CM007886_00006 - 0.032 14.1 0.0 8.3 6.3 0.0 2.3 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda FapA PF03961.13 CM007886_00007 - 3.5e-30 105.0 37.0 5.2e-30 104.5 36.7 1.4 1 1 0 1 1 1 1 Flagellar Assembly Protein A FAM76 PF16046.5 CM007886_00007 - 0.027 13.8 8.1 0.061 12.7 8.1 1.6 1 0 0 1 1 1 0 FAM76 protein MurJ PF03023.14 CM007886_00008 - 1e-91 307.8 60.1 1.7e-91 307.1 60.1 1.3 1 1 0 1 1 1 1 Lipid II flippase MurJ tRNA-synt_1e PF01406.19 CM007886_00009 - 1e-109 366.5 0.6 1.7e-109 365.8 0.6 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 CM007886_00009 - 9e-14 51.0 1.5 3.4e-07 29.3 0.0 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (M) DALR_2 PF09190.11 CM007886_00009 - 1.1e-07 32.2 4.6 7.2e-06 26.4 1.4 2.8 2 0 0 2 2 2 2 DALR domain tRNA-synt_1 PF00133.22 CM007886_00009 - 1.6e-06 26.7 0.0 0.00047 18.5 0.0 2.6 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 CM007886_00009 - 0.0002 20.4 0.2 0.02 13.8 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 CM007886_00009 - 0.0023 18.0 0.0 0.0076 16.3 0.0 1.9 1 0 0 1 1 1 1 Sgs1 RecQ helicase DUF4919 PF16266.5 CM007886_00009 - 0.013 15.4 0.0 0.033 14.1 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4919) ABC_membrane PF00664.23 CM007886_00010 - 4.4e-48 164.3 8.4 5.8e-48 163.9 8.4 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CM007886_00010 - 4.9e-31 108.1 0.1 9e-31 107.2 0.1 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CM007886_00010 - 6e-10 38.9 5.9 1.4e-08 34.5 5.9 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CM007886_00010 - 0.00081 19.3 0.2 0.0019 18.1 0.1 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 CM007886_00010 - 0.0025 18.1 0.4 0.027 14.7 0.4 2.4 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 CM007886_00010 - 0.0056 16.9 0.2 0.046 14.0 0.2 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 CM007886_00010 - 0.0098 15.6 0.1 0.04 13.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain ATP-synt_I PF03899.15 CM007886_00010 - 0.024 15.0 0.3 0.024 15.0 0.3 3.4 3 0 0 3 3 3 0 ATP synthase I chain AAA_16 PF13191.6 CM007886_00010 - 0.035 14.5 0.0 0.094 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 CM007886_00010 - 0.094 12.5 0.7 0.19 11.5 0.1 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain DHO_dh PF01180.21 CM007886_00011 - 2.7e-72 243.5 0.1 3.1e-72 243.3 0.1 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase ThiI PF02568.14 CM007886_00011 - 0.031 13.9 0.0 0.086 12.4 0.0 1.7 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 CM007886_00011 - 0.069 12.6 0.1 1.4 8.3 0.0 2.1 2 0 0 2 2 2 0 PcrB family Peptidase_M16_C PF05193.21 CM007886_00012 - 7.8e-31 107.5 1.1 1.1e-29 103.8 0.3 2.4 3 0 0 3 3 3 1 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 CM007886_00012 - 8.6e-25 87.5 0.0 1.9e-24 86.3 0.0 1.5 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) LuxS PF02664.15 CM007886_00012 - 0.022 14.4 0.0 5.3 6.7 0.0 2.4 2 0 0 2 2 2 0 S-Ribosylhomocysteinase (LuxS) DHDPS PF00701.22 CM007886_00013 - 1.8e-88 296.0 0.2 2.3e-88 295.7 0.2 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family CTK3 PF12243.8 CM007886_00013 - 0.068 13.2 0.0 0.32 11.0 0.0 2.0 2 0 0 2 2 2 0 CTD kinase subunit gamma CTK3 adh_short_C2 PF13561.6 CM007886_00014 - 3.4e-59 200.2 1.1 4.2e-59 200.0 1.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CM007886_00014 - 1.6e-33 115.8 2.4 1.9e-33 115.6 2.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CM007886_00014 - 0.00012 22.1 0.1 0.00025 21.0 0.1 1.5 1 1 0 1 1 1 1 KR domain RRM_3 PF08777.11 CM007886_00014 - 0.016 15.3 0.3 3.1 7.9 0.2 2.3 2 0 0 2 2 2 0 RNA binding motif Lactamase_B PF00753.27 CM007886_00016 - 1.7e-26 93.4 0.0 2.2e-26 93.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 CM007886_00016 - 0.00014 21.5 0.2 0.00018 21.1 0.2 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain NAD_synthase PF02540.17 CM007886_00017 - 3.7e-79 265.2 0.1 4.2e-79 265.1 0.1 1.0 1 0 0 1 1 1 1 NAD synthase RPAP1_N PF08621.10 CM007886_00017 - 6.6e-06 25.8 0.6 0.00013 21.7 0.7 2.3 2 0 0 2 2 2 1 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 CM007886_00017 - 1.2e-05 24.3 0.0 0.00092 18.1 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 CM007886_00017 - 0.00031 20.3 0.0 0.0011 18.5 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 CM007886_00017 - 0.0013 18.5 0.0 0.002 17.8 0.0 1.4 1 1 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 CM007886_00017 - 0.04 13.7 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 PP-loop family LpxK PF02606.14 CM007886_00018 - 1.6e-38 132.6 0.0 5.4e-28 98.0 0.0 2.0 1 1 1 2 2 2 2 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 CM007886_00018 - 0.051 14.0 0.2 0.16 12.4 0.1 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PALP PF00291.25 CM007886_00019 - 1.4e-09 37.8 0.0 2.3e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 CM007886_00019 - 2.1e-07 31.1 0.3 1.2e-06 28.6 0.0 2.4 3 0 0 3 3 3 1 Threonine synthase N terminus CbiA PF01656.23 CM007886_00019 - 0.039 14.0 0.0 0.59 10.2 0.0 2.6 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain CTP_transf_3 PF02348.19 CM007886_00020 - 9.6e-46 156.5 0.3 1.2e-45 156.1 0.3 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 CM007886_00020 - 1.3e-05 25.6 0.0 1.6e-05 25.4 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain HTH_19 PF12844.7 CM007886_00020 - 0.0091 16.0 2.0 0.047 13.7 0.4 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain MAF_flag10 PF01973.18 CM007887_00001 - 3.7e-42 143.9 0.7 5.4e-42 143.4 0.1 1.6 2 0 0 2 2 2 1 Protein of unknown function DUF115 Med15_fungi PF05397.12 CM007887_00001 - 0.011 16.0 0.7 0.15 12.4 0.2 2.3 2 0 0 2 2 2 0 Mediator complex subunit 15 Mur_ligase_M PF08245.12 CM007888_00001 - 3.6e-20 72.8 0.8 1.9e-19 70.4 0.1 2.4 2 1 0 2 2 2 1 Mur ligase middle domain Mur_ligase_C PF02875.21 CM007888_00001 - 0.0043 17.3 0.0 0.011 16.0 0.0 1.7 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain CTP_transf_3 PF02348.19 CM007888_00003 - 9.6e-46 156.5 0.3 1.2e-45 156.1 0.3 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 CM007888_00003 - 1.3e-05 25.6 0.0 1.6e-05 25.4 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain HTH_19 PF12844.7 CM007888_00003 - 0.0091 16.0 2.0 0.047 13.7 0.4 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain PALP PF00291.25 CM007888_00004 - 1.4e-09 37.8 0.0 2.3e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 CM007888_00004 - 2.1e-07 31.1 0.3 1.2e-06 28.6 0.0 2.4 3 0 0 3 3 3 1 Threonine synthase N terminus CbiA PF01656.23 CM007888_00004 - 0.039 14.0 0.0 0.59 10.2 0.0 2.6 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain LpxK PF02606.14 CM007888_00005 - 1.6e-38 132.6 0.0 5.4e-28 98.0 0.0 2.0 1 1 1 2 2 2 2 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 CM007888_00005 - 0.051 14.0 0.2 0.16 12.4 0.1 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NAD_synthase PF02540.17 CM007888_00006 - 3.7e-79 265.2 0.1 4.2e-79 265.1 0.1 1.0 1 0 0 1 1 1 1 NAD synthase RPAP1_N PF08621.10 CM007888_00006 - 6.6e-06 25.8 0.6 0.00013 21.7 0.7 2.3 2 0 0 2 2 2 1 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 CM007888_00006 - 1.2e-05 24.3 0.0 0.00092 18.1 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 CM007888_00006 - 0.00031 20.3 0.0 0.0011 18.5 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 CM007888_00006 - 0.0013 18.5 0.0 0.002 17.8 0.0 1.4 1 1 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 CM007888_00006 - 0.04 13.7 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 PP-loop family Lactamase_B PF00753.27 CM007888_00007 - 1.7e-26 93.4 0.0 2.2e-26 93.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 CM007888_00007 - 0.00014 21.5 0.2 0.00018 21.1 0.2 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain adh_short_C2 PF13561.6 CM007888_00009 - 3.4e-59 200.2 1.1 4.2e-59 200.0 1.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 CM007888_00009 - 1.6e-33 115.8 2.4 1.9e-33 115.6 2.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 CM007888_00009 - 0.00012 22.1 0.1 0.00025 21.0 0.1 1.5 1 1 0 1 1 1 1 KR domain RRM_3 PF08777.11 CM007888_00009 - 0.016 15.3 0.3 3.1 7.9 0.2 2.3 2 0 0 2 2 2 0 RNA binding motif DHDPS PF00701.22 CM007888_00010 - 1.8e-88 296.0 0.2 2.3e-88 295.7 0.2 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family CTK3 PF12243.8 CM007888_00010 - 0.068 13.2 0.0 0.32 11.0 0.0 2.0 2 0 0 2 2 2 0 CTD kinase subunit gamma CTK3 Peptidase_M16_C PF05193.21 CM007888_00011 - 7.8e-31 107.5 1.1 1.1e-29 103.8 0.3 2.4 3 0 0 3 3 3 1 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 CM007888_00011 - 8.6e-25 87.5 0.0 1.9e-24 86.3 0.0 1.5 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) LuxS PF02664.15 CM007888_00011 - 0.022 14.4 0.0 5.3 6.7 0.0 2.4 2 0 0 2 2 2 0 S-Ribosylhomocysteinase (LuxS) DHO_dh PF01180.21 CM007888_00012 - 2.7e-72 243.5 0.1 3.1e-72 243.3 0.1 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase ThiI PF02568.14 CM007888_00012 - 0.031 13.9 0.0 0.086 12.4 0.0 1.7 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 CM007888_00012 - 0.069 12.6 0.1 1.4 8.3 0.0 2.1 2 0 0 2 2 2 0 PcrB family ABC_membrane PF00664.23 CM007888_00013 - 4.4e-48 164.3 8.4 5.8e-48 163.9 8.4 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 CM007888_00013 - 4.9e-31 108.1 0.1 9e-31 107.2 0.1 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 CM007888_00013 - 6e-10 38.9 5.9 1.4e-08 34.5 5.9 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 CM007888_00013 - 0.00081 19.3 0.2 0.0019 18.1 0.1 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 CM007888_00013 - 0.0025 18.1 0.4 0.027 14.7 0.4 2.4 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 CM007888_00013 - 0.0056 16.9 0.2 0.046 14.0 0.2 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 CM007888_00013 - 0.0098 15.6 0.1 0.04 13.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain ATP-synt_I PF03899.15 CM007888_00013 - 0.024 15.0 0.3 0.024 15.0 0.3 3.4 3 0 0 3 3 3 0 ATP synthase I chain AAA_16 PF13191.6 CM007888_00013 - 0.035 14.5 0.0 0.094 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 CM007888_00013 - 0.094 12.5 0.7 0.19 11.5 0.1 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain tRNA-synt_1e PF01406.19 CM007888_00014 - 1e-109 366.5 0.6 1.7e-109 365.8 0.6 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 CM007888_00014 - 9e-14 51.0 1.5 3.4e-07 29.3 0.0 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (M) DALR_2 PF09190.11 CM007888_00014 - 1.1e-07 32.2 4.6 7.2e-06 26.4 1.4 2.8 2 0 0 2 2 2 2 DALR domain tRNA-synt_1 PF00133.22 CM007888_00014 - 1.6e-06 26.7 0.0 0.00047 18.5 0.0 2.6 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 CM007888_00014 - 0.0002 20.4 0.2 0.02 13.8 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 CM007888_00014 - 0.0023 18.0 0.0 0.0076 16.3 0.0 1.9 1 0 0 1 1 1 1 Sgs1 RecQ helicase DUF4919 PF16266.5 CM007888_00014 - 0.013 15.4 0.0 0.033 14.1 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4919) MurJ PF03023.14 CM007888_00015 - 1e-91 307.8 60.1 1.7e-91 307.1 60.1 1.3 1 1 0 1 1 1 1 Lipid II flippase MurJ FapA PF03961.13 CM007888_00016 - 3.5e-30 105.0 37.0 5.2e-30 104.5 36.7 1.4 1 1 0 1 1 1 1 Flagellar Assembly Protein A FAM76 PF16046.5 CM007888_00016 - 0.027 13.8 8.1 0.061 12.7 8.1 1.6 1 0 0 1 1 1 0 FAM76 protein HHH_5 PF14520.6 CM007888_00017 - 2.8e-15 56.6 0.0 6.7e-15 55.4 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain RuvA_N PF01330.21 CM007888_00017 - 4.3e-10 39.5 0.1 3.1e-09 36.8 0.1 2.1 2 0 0 2 2 2 1 RuvA N terminal domain RuvA_C PF07499.13 CM007888_00017 - 2.2e-08 34.4 2.0 4.2e-08 33.5 2.0 1.5 1 0 0 1 1 1 1 RuvA, C-terminal domain HHH PF00633.23 CM007888_00017 - 4.7e-07 29.4 0.1 0.0027 17.5 0.2 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 CM007888_00017 - 5.6e-05 23.5 0.1 0.03 14.7 0.0 2.3 1 1 1 2 2 2 2 Ribosomal protein S13/S18 HHH_2 PF12826.7 CM007888_00017 - 0.00086 19.4 0.0 1.8 8.7 0.0 2.6 1 1 1 2 2 2 2 Helix-hairpin-helix motif HHH_3 PF12836.7 CM007888_00017 - 0.00095 19.4 0.0 0.033 14.5 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 CM007888_00017 - 0.0011 19.5 0.7 0.0077 16.8 0.2 2.2 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 CM007888_00017 - 0.0083 16.4 0.0 0.43 10.9 0.0 2.3 2 0 0 2 2 2 1 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 CM007888_00017 - 0.019 15.3 0.1 0.19 12.1 0.1 2.6 2 1 0 2 2 2 0 IMS family HHH motif HHH_8 PF14716.6 CM007888_00017 - 0.022 15.1 0.2 0.45 10.9 0.1 2.4 1 1 1 2 2 2 0 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 CM007888_00017 - 0.032 14.1 0.0 8.3 6.3 0.0 2.3 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda Dala_Dala_lig_C PF07478.13 CM007888_00018 - 2.6e-32 112.1 0.1 3.6e-32 111.6 0.1 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 CM007888_00018 - 1.3e-20 73.8 0.0 1.1e-19 70.8 0.0 2.2 2 1 0 2 2 2 1 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 CM007888_00018 - 1.2e-05 25.0 0.0 0.0089 15.6 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_4 PF13535.6 CM007888_00018 - 0.00023 20.8 0.0 0.00062 19.4 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 CM007888_00018 - 0.0015 18.6 0.1 0.11 12.5 0.1 2.9 1 1 1 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 CM007888_00018 - 0.069 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain PhdYeFM_antitox PF02604.19 CM007888_00019 - 1.2e-08 34.6 0.2 1.4e-08 34.4 0.2 1.2 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system TraC_F_IV PF11130.8 CP009044_00001 - 7.6e-30 104.3 0.0 1.4e-29 103.4 0.0 1.4 1 0 0 1 1 1 1 F pilus assembly Type-IV secretion system for plasmid transfer AAA_10 PF12846.7 CP009044_00001 - 3.3e-10 39.4 0.0 1.7e-09 37.1 0.0 2.0 1 1 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.9 CP009044_00001 - 0.00074 18.5 0.0 0.8 8.5 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 CP009044_00001 - 0.0072 16.6 0.1 4.1 7.7 0.0 3.2 3 0 0 3 3 3 1 AAA domain Zot PF05707.12 CP009044_00001 - 0.012 15.2 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) FH2 PF02181.23 CP009044_00001 - 0.016 14.4 1.1 1 8.4 0.0 2.3 2 0 0 2 2 2 0 Formin Homology 2 Domain CbiA PF01656.23 CP009044_00001 - 0.039 14.0 0.0 0.1 12.7 0.0 1.7 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain TrbI_Ftype PF09677.10 CP009044_00002 - 2.1e-05 24.8 1.3 2.5e-05 24.6 1.3 1.4 1 1 0 1 1 1 1 Type-F conjugative transfer system protein (TrbI_Ftype) Peptidase_S26 PF10502.9 CP009044_00003 - 2.2e-13 50.2 0.0 3.4e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 Signal peptidase, peptidase S26 TraH PF06122.11 CP009044_00004 - 5.6e-68 229.8 2.0 7.8e-68 229.4 2.0 1.2 1 0 0 1 1 1 1 Conjugative relaxosome accessory transposon protein TraN PF06986.11 CP009044_00006 - 4.3e-29 101.9 9.8 4.3e-29 101.9 9.8 4.9 2 2 3 5 5 5 2 Type-1V conjugative transfer system mating pair stabilisation Staphylokinase PF02821.16 CP009044_00011 - 0.075 13.5 5.2 2.6 8.5 1.5 2.1 1 1 1 2 2 2 0 Staphylokinase/Streptokinase family HTH_19 PF12844.7 CP009044_00013 - 9.4e-08 32.0 0.6 3.6e-07 30.1 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 CP009044_00013 - 3.1e-06 27.1 0.2 5.9e-06 26.2 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 CP009044_00013 - 0.0061 17.0 0.0 0.0099 16.3 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Phage_CI_repr PF07022.13 CP009044_00013 - 0.012 15.7 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_25 PF13413.6 CP009044_00013 - 0.014 15.2 0.0 0.028 14.3 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain Pup PF05639.11 CP009044_00013 - 0.02 15.8 0.3 0.038 14.9 0.3 1.4 1 0 0 1 1 1 0 Pup-like protein Nbl1_Borealin_N PF10444.9 CP009044_00013 - 0.047 13.3 2.8 0.37 10.5 0.2 2.5 3 0 0 3 3 3 0 Nbl1 / Borealin N terminal zf-ACC PF17848.1 CP009044_00016 - 0.0036 17.3 4.1 0.8 9.8 0.4 2.6 2 0 0 2 2 2 2 Acetyl-coA carboxylase zinc finger domain zf-ribbon_3 PF13248.6 CP009044_00016 - 0.0069 15.8 2.9 1.8 8.1 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 CP009044_00016 - 0.0087 15.6 2.4 0.77 9.3 0.4 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding tRNA-synt_1g PF09334.11 CP009044_00016 - 0.021 13.6 0.7 0.024 13.4 0.7 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (M) zf-ISL3 PF14690.6 CP009044_00016 - 0.023 15.4 1.2 0.26 12.0 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.10 CP009044_00016 - 0.031 14.4 0.3 5.9 7.1 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_5 PF13719.6 CP009044_00016 - 0.032 14.0 1.0 6.4 6.6 0.0 2.5 3 0 0 3 3 3 0 zinc-ribbon domain zf-LITAF-like PF10601.9 CP009044_00016 - 0.064 13.5 1.4 7.3 6.9 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Elf1 PF05129.13 CP009044_00016 - 0.09 12.8 2.1 0.075 13.1 0.9 1.5 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf-C2H2_4 PF13894.6 CP009044_00016 - 0.09 13.7 1.8 19 6.4 0.1 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger Phage_integrase PF00589.22 CP009044_00017 - 4.8e-23 81.8 0.1 8.8e-23 80.9 0.1 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 CP009044_00017 - 0.0021 18.5 8.6 0.2 12.1 0.7 2.9 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 CP009044_00017 - 0.0042 17.4 0.3 0.023 15.0 0.3 2.2 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DUF1566 PF07603.11 CP009044_00018 - 0.0015 18.9 0.0 0.0019 18.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1566) DUF433 PF04255.14 CP009044_00019 - 0.047 13.5 0.0 0.069 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF433) Toxin_YhaV PF11663.8 CP009044_00019 - 0.079 13.0 0.0 0.17 11.9 0.0 1.5 2 0 0 2 2 2 0 Toxin with endonuclease activity, of toxin-antitoxin system WGR PF05406.15 CP009044_00023 - 6.7e-07 29.3 0.3 8.8e-07 28.9 0.3 1.2 1 0 0 1 1 1 1 WGR domain DUF3951 PF13131.6 CP009044_00027 - 0.048 13.9 0.2 0.048 13.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3951) HD_2 PF12917.7 CP009044_00029 - 0.00032 20.5 0.1 0.00069 19.4 0.1 1.6 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme CDT1 PF08839.11 CP009044_00031 - 0.089 13.1 0.0 0.12 12.7 0.0 1.1 1 0 0 1 1 1 0 DNA replication factor CDT1 like DUF1351 PF07083.11 CP009044_00032 - 3.8e-24 85.6 8.0 3.8e-24 85.6 8.0 2.1 1 1 0 2 2 2 1 Protein of unknown function (DUF1351) LBR_tudor PF09465.10 CP009044_00033 - 0.036 13.9 0.2 0.058 13.2 0.2 1.4 1 0 0 1 1 1 0 Lamin-B receptor of TUDOR domain zf-B_box PF00643.24 CP009044_00034 - 0.006 16.7 13.5 0.0062 16.7 7.5 2.3 2 0 0 2 2 2 1 B-box zinc finger FYVE PF01363.21 CP009044_00034 - 0.026 14.6 6.7 0.067 13.3 6.9 1.6 1 1 0 1 1 1 0 FYVE zinc finger DUF4428 PF14471.6 CP009044_00034 - 0.069 13.1 0.1 0.069 13.1 0.1 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4428) zf-ACC PF17848.1 CP009044_00037 - 0.098 12.8 3.8 8 6.6 0.5 3.0 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Toprim_2 PF13155.6 CP009044_00039 - 1e-14 54.7 0.0 2.7e-14 53.3 0.0 1.7 2 0 0 2 2 2 1 Toprim-like Toprim_3 PF13362.6 CP009044_00039 - 1.6e-08 34.8 0.0 3e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Toprim domain zf-CHC2 PF01807.20 CP009044_00039 - 4.3e-07 29.7 0.3 9.7e-07 28.5 0.3 1.6 1 0 0 1 1 1 1 CHC2 zinc finger Toprim_4 PF13662.6 CP009044_00039 - 0.0096 16.4 0.0 0.024 15.1 0.0 1.7 1 0 0 1 1 1 1 Toprim domain DUF3854 PF12965.7 CP009044_00039 - 0.023 14.7 0.2 0.29 11.1 0.2 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3854) N6_N4_Mtase PF01555.18 CP009044_00040 - 2.4e-05 24.2 0.4 0.042 13.5 0.2 2.1 2 0 0 2 2 2 2 DNA methylase DpnI_C PF17726.1 CP009044_00040 - 0.00013 22.0 0.3 0.00036 20.6 0.3 1.7 1 0 0 1 1 1 1 Dam-replacing HTH domain zf-BED PF02892.15 CP009044_00041 - 0.042 13.9 0.0 0.097 12.7 0.0 1.6 1 0 0 1 1 1 0 BED zinc finger DUF4258 PF14076.6 CP009044_00045 - 0.069 13.5 0.3 0.81 10.1 0.3 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4258) MPTase-PolyVal PF18818.1 CP009044_00046 - 8.2e-48 161.6 0.0 1.2e-47 161.0 0.0 1.3 1 0 0 1 1 1 1 Metallopeptidase superfamily domain DUF1738 PF08401.11 CP009044_00046 - 1.1e-33 116.1 0.1 1.9e-33 115.3 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1738) EpmC PF04315.12 CP009044_00046 - 0.00047 19.9 0.0 0.00087 19.0 0.0 1.4 1 0 0 1 1 1 1 Elongation factor P hydroxylase Tox-MPTase3 PF15639.6 CP009044_00046 - 0.0042 16.9 0.1 0.0092 15.8 0.1 1.5 1 0 0 1 1 1 1 Metallopeptidase toxin 3 DUF4127 PF13552.6 CP009044_00046 - 0.021 13.5 0.1 0.028 13.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4127) GP88 PF17338.2 CP009044_00046 - 0.022 14.2 0.1 0.059 12.8 0.0 1.7 2 0 0 2 2 2 0 Gene product 88 Fucose_iso_N2 PF07882.12 CP009044_00047 - 0.0057 16.2 0.8 0.01 15.5 0.3 1.6 1 1 1 2 2 2 1 L-fucose isomerase, second N-terminal domain RNA_pol_Rpb8 PF03870.15 CP009044_00047 - 0.056 13.6 0.1 0.076 13.2 0.1 1.2 1 0 0 1 1 1 0 RNA polymerase Rpb8 s48_45 PF07422.13 CP009044_00047 - 0.082 13.5 0.8 0.28 11.8 0.1 1.8 1 1 0 2 2 2 0 Sexual stage antigen s48/45 domain RecT PF03837.14 CP009044_00048 - 1.2e-36 126.1 0.3 4.5e-36 124.2 0.0 1.8 1 1 1 2 2 2 1 RecT family Cas_Cas4 PF01930.17 CP009044_00051 - 1.6e-06 28.3 0.2 1.6e-06 28.3 0.2 2.1 3 0 0 3 3 3 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 CP009044_00051 - 8.1e-05 22.7 1.2 0.00013 22.0 0.2 1.9 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Nsp1_C PF05064.13 CP009044_00051 - 0.0026 17.5 0.5 0.0026 17.5 0.5 1.9 2 0 0 2 2 2 1 Nsp1-like C-terminal region GrpE PF01025.19 CP009044_00051 - 0.011 15.4 1.7 0.011 15.4 1.7 2.3 2 0 0 2 2 2 0 GrpE CENP-F_leu_zip PF10473.9 CP009044_00051 - 0.035 14.1 9.6 0.043 13.8 3.0 2.6 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4407 PF14362.6 CP009044_00051 - 0.058 12.7 1.6 0.1 11.9 1.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) SSB PF00436.25 CP009044_00053 - 1.8e-29 101.9 0.2 3.2e-29 101.0 0.2 1.4 1 0 0 1 1 1 1 Single-strand binding protein family Toxin-JAB1 PF15659.6 CP009044_00054 - 0.088 13.2 0.0 0.11 12.9 0.0 1.1 1 0 0 1 1 1 0 JAB-like toxin 1 Dus PF01207.17 CP009044_00058 - 0.03 13.4 0.1 0.04 13.0 0.1 1.2 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) SLT PF01464.20 CP009044_00059 - 4.6e-19 68.2 0.0 6.1e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 Transglycosylase SLT domain Lys PF00062.20 CP009044_00059 - 0.012 15.8 0.0 0.019 15.2 0.0 1.3 1 0 0 1 1 1 0 C-type lysozyme/alpha-lactalbumin family DUF480 PF04337.12 CP009044_00060 - 0.0017 18.4 0.1 0.0019 18.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF480 RdRP_1 PF00680.20 CP009044_00060 - 0.027 13.0 0.1 0.03 12.8 0.1 1.0 1 0 0 1 1 1 0 RNA dependent RNA polymerase DUF3267 PF11667.8 CP009044_00061 - 0.042 14.1 8.6 0.053 13.8 5.1 2.6 1 1 1 2 2 2 0 Putative zincin peptidase GGDEF PF00990.21 CP009044_00062 - 5e-34 117.4 0.6 1.1e-33 116.2 0.6 1.6 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain HD PF01966.22 CP009044_00062 - 2.7e-05 24.4 0.4 2.7e-05 24.4 0.4 3.0 4 0 0 4 4 4 1 HD domain SporV_AA PF12164.8 CP009044_00062 - 0.039 14.3 4.1 0.057 13.8 0.2 3.1 3 0 0 3 3 3 0 Stage V sporulation protein AA STAR_dimer PF16544.5 CP009044_00062 - 0.044 13.4 0.3 0.14 11.7 0.1 1.9 2 0 0 2 2 2 0 Homodimerisation region of STAR domain protein Toxin-deaminase PF14424.6 CP009044_00062 - 0.045 13.9 0.6 0.045 13.9 0.6 3.2 3 0 0 3 3 3 0 The BURPS668_1122 family of deaminases Stealth_CR4 PF17103.5 CP009044_00062 - 0.081 12.8 0.1 6.1 6.8 0.0 2.8 2 0 0 2 2 2 0 Stealth protein CR4, conserved region 4 TrwB_AAD_bind PF10412.9 CP009044_00063 - 5.1e-16 58.6 0.0 1.7e-07 30.5 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 CP009044_00063 - 2e-11 43.4 0.6 2.8e-11 42.9 0.6 1.1 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 CP009044_00063 - 4.3e-10 39.7 0.0 8.3e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG DUF87 PF01935.17 CP009044_00063 - 0.0005 20.2 0.3 0.0045 17.1 0.3 2.3 1 1 0 1 1 1 1 Helicase HerA, central domain Zeta_toxin PF06414.12 CP009044_00063 - 0.0014 17.9 0.0 0.0035 16.6 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 CP009044_00063 - 0.0017 18.8 0.0 0.0043 17.5 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 CP009044_00063 - 0.0022 18.0 0.0 0.01 15.8 0.0 2.1 2 2 0 2 2 2 1 ATPase domain predominantly from Archaea DUF853 PF05872.12 CP009044_00063 - 0.0045 15.6 0.0 0.0082 14.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 CP009044_00063 - 0.0054 15.7 0.1 0.12 11.2 0.0 2.4 3 0 0 3 3 3 1 AAA-like domain AAA_22 PF13401.6 CP009044_00063 - 0.011 16.1 0.0 0.036 14.3 0.0 1.9 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 CP009044_00063 - 0.095 12.0 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family HD_5 PF13487.6 CP009044_00064 - 4.6e-06 26.8 0.0 8.2e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 HD domain GA-like PF17573.2 CP009044_00067 - 0.035 14.0 0.4 0.19 11.6 0.1 2.1 2 0 0 2 2 2 0 GA-like domain HTH_3 PF01381.22 CP009044_00068 - 2.7e-14 52.9 0.0 3.3e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 CP009044_00068 - 7.9e-13 48.2 0.0 8.8e-13 48.1 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 CP009044_00068 - 8.3e-08 32.5 0.0 8.8e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 CP009044_00068 - 0.0011 18.8 0.0 0.0015 18.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_CI_repr PF07022.13 CP009044_00068 - 0.0028 17.7 0.0 0.0043 17.1 0.0 1.3 1 1 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain Pou PF00157.17 CP009044_00068 - 0.026 14.5 0.1 0.037 14.0 0.1 1.3 1 0 0 1 1 1 0 Pou domain - N-terminal to homeobox domain HTH_37 PF13744.6 CP009044_00068 - 0.047 13.7 0.0 0.052 13.5 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain MqsA_antitoxin PF15731.5 CP009044_00068 - 0.055 13.6 0.0 0.064 13.4 0.0 1.1 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_23 PF13384.6 CP009044_00068 - 0.064 13.1 0.0 0.14 12.0 0.0 1.6 2 0 0 2 2 2 0 Homeodomain-like domain WYL_3 PF18488.1 CP009044_00068 - 0.081 13.3 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 WYL domain SNase PF00565.17 CP009044_00069 - 4.4e-17 62.5 0.1 5.5e-17 62.2 0.1 1.1 1 0 0 1 1 1 1 Staphylococcal nuclease homologue AAA_25 PF13481.6 CP009044_00072 - 5.9e-17 61.9 0.0 9.6e-17 61.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain DnaB PF00772.21 CP009044_00072 - 1.3e-06 28.4 0.3 2.9e-06 27.3 0.3 1.6 1 0 0 1 1 1 1 DnaB-like helicase N terminal domain Thioredoxin_2 PF13098.6 CP009044_00073 - 2.7e-05 24.6 0.2 0.00022 21.6 0.2 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.6 CP009044_00073 - 3.2e-05 24.0 0.0 4.3e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredox_DsbH PF03190.15 CP009044_00073 - 0.00012 22.1 0.1 0.0003 20.8 0.1 1.6 1 1 0 1 1 1 1 Protein of unknown function, DUF255 VSG_B PF13206.6 CP009044_00074 - 0.018 14.3 0.9 0.018 14.3 0.9 1.0 1 0 0 1 1 1 0 Trypanosomal VSG domain HSCB_C PF07743.13 CP009044_00074 - 0.019 15.5 2.0 0.021 15.3 2.0 1.1 1 0 0 1 1 1 0 HSCB C-terminal oligomerisation domain YtxH PF12732.7 CP009044_00074 - 0.034 14.7 0.1 0.045 14.3 0.1 1.2 1 0 0 1 1 1 0 YtxH-like protein TrbC_Ftype PF09673.10 CP009044_00075 - 9.3e-17 61.1 0.0 2.2e-16 59.9 0.0 1.6 1 0 0 1 1 1 1 Type-F conjugative transfer system pilin assembly protein DUF3388 PF11868.8 CP009044_00075 - 0.035 13.4 0.2 0.27 10.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3388) EAL PF00563.20 CP009044_00076 - 3.4e-28 98.8 0.0 4.6e-28 98.4 0.0 1.2 1 0 0 1 1 1 1 EAL domain TraU PF06834.11 CP009044_00077 - 8.2e-100 334.0 0.4 9.4e-100 333.8 0.4 1.0 1 0 0 1 1 1 1 TraU protein TraF PF13728.6 CP009044_00079 - 3e-30 105.7 10.7 3.5e-30 105.5 10.7 1.0 1 0 0 1 1 1 1 F plasmid transfer operon protein KaiB PF07689.12 CP009044_00079 - 0.055 13.2 0.2 1.5 8.6 0.0 2.3 2 0 0 2 2 2 0 KaiB domain TraG_N PF07916.11 CP009044_00080 - 1.7e-51 175.6 17.8 1.7e-51 175.6 17.8 2.8 3 0 0 3 3 3 2 TraG-like protein, N-terminal region YfhO PF09586.10 CP009044_00081 - 0.016 13.5 2.6 0.018 13.3 2.6 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO DUF1189 PF06691.11 CP009044_00081 - 0.017 14.7 2.0 0.02 14.5 2.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1189) Herpes_LMP1 PF05297.11 CP009044_00081 - 0.068 12.4 3.2 0.083 12.1 3.2 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) RHH_3 PF12651.7 CP009044_00082 - 0.0013 18.6 1.3 0.0028 17.6 0.8 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix domain DUF5123 PF17161.4 CP009044_00082 - 0.058 14.5 0.9 0.068 14.2 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5123) UvrB_inter PF17757.1 CP009044_00083 - 0.052 13.7 0.2 0.14 12.4 0.2 1.7 1 0 0 1 1 1 0 UvrB interaction domain ALP_N PF17989.1 CP009044_00085 - 5.9e-15 55.7 0.1 1.1e-14 54.8 0.1 1.5 1 0 0 1 1 1 1 Actin like proteins N terminal domain FtsA PF14450.6 CP009044_00085 - 0.00012 22.5 0.1 0.031 14.7 0.0 2.4 2 0 0 2 2 2 2 Cell division protein FtsA DBR1 PF05011.13 CP009044_00086 - 0.0072 16.8 1.1 0.0081 16.6 1.1 1.1 1 0 0 1 1 1 1 Lariat debranching enzyme, C-terminal domain Acetyltransf_9 PF13527.7 CP009044_00088 - 0.099 12.7 0.0 0.16 12.0 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain SSXT PF05030.12 CP009044_00090 - 0.022 14.4 0.0 0.037 13.6 0.0 1.6 1 0 0 1 1 1 0 SSXT protein (N-terminal region) NMT PF01233.19 CP009044_00090 - 0.092 12.6 0.6 0.11 12.3 0.6 1.5 1 1 0 1 1 1 0 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain AbiH PF14253.6 CP009044_00092 - 0.023 14.6 1.3 0.03 14.2 1.3 1.2 1 0 0 1 1 1 0 Bacteriophage abortive infection AbiH ANT PF03374.14 CP009044_00093 - 0.041 14.2 0.0 0.045 14.1 0.0 1.1 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain PhetRS_B1 PF18262.1 CP009044_00093 - 0.062 13.5 0.2 0.076 13.2 0.2 1.1 1 0 0 1 1 1 0 Phe-tRNA synthetase beta subunit B1 domain AAA_19 PF13245.6 CP009044_00095 - 2.8e-13 50.4 0.0 7.5e-13 49.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain UvrD-helicase PF00580.21 CP009044_00095 - 4.2e-13 49.5 7.9 3.8e-08 33.2 2.3 3.7 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 CP009044_00095 - 3.2e-12 46.5 2.8 1.2e-11 44.7 1.9 2.0 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 CP009044_00095 - 5.1e-09 35.8 0.0 2.9e-08 33.4 0.0 2.2 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 CP009044_00095 - 1.1e-08 35.1 0.7 0.0055 16.5 0.0 3.5 2 1 1 4 4 4 3 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 CP009044_00095 - 0.00014 21.6 0.1 0.0023 17.7 0.0 2.6 3 0 0 3 3 3 1 AAA domain PhoH PF02562.16 CP009044_00095 - 0.00093 18.7 0.0 0.18 11.2 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein ResIII PF04851.15 CP009044_00095 - 0.011 15.7 5.8 0.027 14.5 1.5 2.9 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_11 PF13086.6 CP009044_00095 - 0.017 15.0 0.3 6.1 6.6 0.0 2.9 3 0 0 3 3 3 0 AAA domain RNase_T PF00929.24 CP009044_00097 - 0.036 14.6 0.1 0.04 14.4 0.1 1.1 1 0 0 1 1 1 0 Exonuclease MrpF_PhaF PF04066.13 CP009044_00106 - 0.01 16.2 1.3 0.01 16.2 1.3 2.5 2 1 0 2 2 2 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) UPF0242 PF06785.11 CP009044_00106 - 0.026 14.6 1.1 0.028 14.5 1.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus UPF0016 PF01169.19 CP009044_00106 - 0.039 14.3 7.1 0.089 13.1 0.8 2.1 1 1 1 2 2 2 0 Uncharacterized protein family UPF0016 TraL PF07178.11 CP009044_00107 - 2.4e-12 47.2 1.0 2.7e-12 47.0 1.0 1.1 1 0 0 1 1 1 1 TraL protein ThrE PF06738.12 CP009044_00107 - 0.024 14.0 0.3 0.026 13.9 0.3 1.0 1 0 0 1 1 1 0 Putative threonine/serine exporter TraE PF05309.11 CP009044_00108 - 2e-34 118.5 1.7 2.5e-34 118.3 1.7 1.0 1 0 0 1 1 1 1 TraE protein MadM PF03818.13 CP009044_00108 - 0.047 13.6 0.2 0.12 12.2 0.2 1.7 1 0 0 1 1 1 0 Malonate/sodium symporter MadM subunit TraK PF06586.11 CP009044_00109 - 9.5e-24 84.4 3.7 3.6e-23 82.5 3.7 1.7 1 1 0 1 1 1 1 TraK protein TrbI PF03743.14 CP009044_00110 - 3.5e-33 115.0 1.1 4.8e-33 114.6 1.1 1.2 1 0 0 1 1 1 1 Bacterial conjugation TrbI-like protein Bap31_Bap29_C PF18035.1 CP009044_00110 - 0.0036 17.3 1.3 0.011 15.7 1.3 1.8 1 0 0 1 1 1 1 Bap31/Bap29 cytoplasmic coiled-coil domain HALZ PF02183.18 CP009044_00110 - 0.0052 17.0 2.6 0.01 16.0 2.6 1.4 1 0 0 1 1 1 1 Homeobox associated leucine zipper bZIP_1 PF00170.21 CP009044_00110 - 0.0093 16.1 2.9 0.027 14.6 2.9 1.8 1 0 0 1 1 1 1 bZIP transcription factor UPF0242 PF06785.11 CP009044_00110 - 0.046 13.8 1.5 0.083 13.0 1.5 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DivIC PF04977.15 CP009044_00110 - 0.094 12.5 3.1 0.23 11.2 3.1 1.6 1 0 0 1 1 1 0 Septum formation initiator Thioredoxin_2 PF13098.6 CP009044_00111 - 3.3e-16 59.7 0.1 6.6e-16 58.7 0.1 1.5 1 0 0 1 1 1 1 Thioredoxin-like domain DsbC_N PF10411.9 CP009044_00111 - 1.3e-07 30.9 0.1 3e-07 29.8 0.1 1.6 1 0 0 1 1 1 1 Disulfide bond isomerase protein N-terminus Thioredoxin_4 PF13462.6 CP009044_00111 - 1.3e-06 28.7 2.0 0.0038 17.4 0.3 3.2 1 1 1 2 2 2 2 Thioredoxin DSBA PF01323.20 CP009044_00111 - 1.3e-06 28.3 0.3 0.01 15.6 0.1 2.4 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Glutaredoxin PF00462.24 CP009044_00111 - 0.0039 17.4 0.3 0.038 14.2 0.1 2.4 2 0 0 2 2 2 1 Glutaredoxin ATPgrasp_YheCD PF14398.6 CP009044_00111 - 0.0088 15.3 0.1 0.014 14.7 0.1 1.2 1 0 0 1 1 1 1 YheC/D like ATP-grasp TraF PF13728.6 CP009044_00111 - 0.013 15.3 0.1 6.2 6.6 0.0 2.4 2 1 0 2 2 2 0 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 CP009044_00111 - 0.021 14.9 1.1 9.8 6.3 0.4 2.8 2 1 1 3 3 3 0 Thioredoxin domain Thioredoxin_8 PF13905.6 CP009044_00111 - 0.04 14.2 0.4 0.18 12.1 0.4 2.1 1 1 0 1 1 1 0 Thioredoxin-like Thioredoxin_5 PF13743.6 CP009044_00111 - 0.071 12.8 0.4 6.9 6.3 0.4 2.3 1 1 1 2 2 2 0 Thioredoxin TraV PF09676.10 CP009044_00112 - 0.0043 18.0 5.3 0.0097 16.9 5.2 1.8 1 1 0 1 1 1 1 Type IV conjugative transfer system lipoprotein (TraV) SH3_4 PF06347.13 CP009044_00112 - 0.0063 16.3 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial SH3 domain SH3_3 PF08239.11 CP009044_00112 - 0.013 15.7 0.1 0.032 14.5 0.1 1.6 1 0 0 1 1 1 0 Bacterial SH3 domain Transketolase_N PF00456.21 CP009044_00112 - 0.049 12.6 0.3 0.085 11.8 0.3 1.5 1 1 0 1 1 1 0 Transketolase, thiamine diphosphate binding domain Herpes_glycop_D PF01537.17 CP009044_00112 - 0.052 13.7 0.0 0.089 13.0 0.0 1.4 1 0 0 1 1 1 0 Herpesvirus glycoprotein D/GG/GX domain SH3_3 PF08239.11 CP009044_00113 - 5.6e-05 23.3 0.1 0.00012 22.3 0.1 1.5 1 0 0 1 1 1 1 Bacterial SH3 domain ADIP PF11559.8 CP009044_00113 - 0.0013 18.8 3.7 0.0023 18.0 3.7 1.4 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding Sec34 PF04136.15 CP009044_00113 - 0.0038 17.1 1.5 0.0054 16.6 1.5 1.3 1 0 0 1 1 1 1 Sec34-like family CLZ PF16526.5 CP009044_00113 - 0.0068 16.7 4.4 1.8 9.0 0.0 2.4 1 1 1 2 2 2 2 C-terminal leucine zipper domain of cyclic nucleotide-gated channels SMC_ScpB PF04079.16 CP009044_00113 - 0.0085 15.7 1.4 0.013 15.2 1.4 1.3 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB V_ATPase_I PF01496.19 CP009044_00113 - 0.022 12.7 3.4 0.025 12.5 3.4 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family HrpB7 PF09486.10 CP009044_00113 - 0.03 14.7 0.6 0.045 14.1 0.6 1.2 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) Cob_adeno_trans PF01923.18 CP009044_00113 - 0.041 14.0 1.6 0.067 13.3 1.6 1.4 1 1 0 1 1 1 0 Cobalamin adenosyltransferase Spectrin PF00435.21 CP009044_00113 - 0.046 14.2 2.7 0.11 13.0 2.7 1.6 1 0 0 1 1 1 0 Spectrin repeat M PF02370.16 CP009044_00113 - 0.072 13.7 6.6 0.31 11.7 6.6 2.2 1 0 0 1 1 1 0 M protein repeat Toprim_3 PF13362.6 CP013735_00001 - 2.4e-08 34.2 0.1 6.4e-08 32.8 0.0 1.7 2 0 0 2 2 2 1 Toprim domain Retrotrans_gag PF03732.17 CP013735_00001 - 0.016 15.5 0.1 1.2 9.4 0.0 2.6 2 0 0 2 2 2 0 Retrotransposon gag protein DUF2315 PF10231.9 CP013735_00001 - 0.055 13.6 8.2 1.3 9.2 0.0 2.8 2 1 1 3 3 3 0 Apoptogenic protein 1 DUF4223 PF13978.6 CP013735_00002 - 0.0072 16.3 0.2 0.012 15.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF4223) TOPRIM_C PF16898.5 CP013735_00003 - 0.029 14.7 1.5 0.031 14.6 1.5 1.0 1 0 0 1 1 1 0 C-terminal associated domain of TOPRIM Pkinase PF00069.25 CP013735_00004 - 2.6e-30 105.7 7.7 4.2e-30 105.0 7.7 1.3 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 CP013735_00004 - 1.6e-26 93.2 0.7 2.2e-26 92.7 0.7 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Pkinase_fungal PF17667.1 CP013735_00004 - 4.7e-06 25.6 0.7 7e-06 25.1 0.7 1.2 1 0 0 1 1 1 1 Fungal protein kinase DUF2841 PF11001.8 CP013735_00004 - 0.0036 17.4 0.7 0.012 15.7 0.7 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2841) ORC6 PF05460.13 CP013735_00004 - 0.011 15.0 0.2 0.016 14.5 0.2 1.2 1 0 0 1 1 1 0 Origin recognition complex subunit 6 (ORC6) HicB_lk_antitox PF15919.5 CP013735_00006 - 3.6e-09 36.8 0.0 3.8e-09 36.7 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 CP013735_00006 - 0.065 12.6 0.0 0.071 12.5 0.0 1.1 1 0 0 1 1 1 0 IRSp53/MIM homology domain AAA_25 PF13481.6 CP013735_00007 - 1.8e-15 57.0 0.0 3.3e-15 56.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 CP013735_00007 - 0.00087 18.7 0.0 0.0041 16.5 0.0 2.0 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 CP013735_00007 - 0.0012 18.6 0.0 0.024 14.4 0.0 2.5 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_24 PF13479.6 CP013735_00007 - 0.0035 17.1 0.0 0.0073 16.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 CP013735_00007 - 0.011 15.1 0.1 0.064 12.6 0.0 2.4 2 1 0 2 2 2 0 KaiC GBR_NSP5 PF17580.2 CP013735_00008 - 0.011 15.6 0.4 0.022 14.6 0.4 1.5 1 0 0 1 1 1 0 Group B Rotavirus Non-structural protein 5 Resolvase PF00239.21 CP013735_00010 - 1.6e-33 115.9 0.7 2.1e-33 115.5 0.7 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_38 PF13936.6 CP013735_00010 - 0.024 14.4 0.8 2.6 7.9 0.1 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Mga PF08280.11 CP013735_00010 - 0.028 14.5 4.9 0.26 11.4 0.7 2.8 3 0 0 3 3 3 0 M protein trans-acting positive regulator (MGA) HTH domain CRISPR_Cas2 PF09827.9 CP013735_00011 - 0.00034 20.7 0.1 0.00085 19.5 0.0 1.8 1 1 1 2 2 2 1 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 CP013735_00011 - 0.046 12.9 0.5 0.057 12.6 0.5 1.0 1 0 0 1 1 1 0 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 CP013735_00013 - 4.9e-14 52.3 5.8 5.6e-14 52.2 5.8 1.0 1 0 0 1 1 1 1 TrbC/VIRB2 family CagE_TrbE_VirB PF03135.14 CP013735_00014 - 7.6e-52 176.4 0.8 1.9e-51 175.1 0.8 1.7 1 0 0 1 1 1 1 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 CP013735_00014 - 7.3e-21 74.2 1.2 1.3e-20 73.4 1.2 1.4 1 0 0 1 1 1 1 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 CP013735_00014 - 3.8e-07 29.3 0.8 9.3e-07 28.1 0.8 1.5 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.17 CP013735_00014 - 0.038 14.1 5.5 1.8 8.6 0.0 4.0 4 2 1 5 5 5 0 Helicase HerA, central domain Phage_pRha PF09669.10 CP013735_00015 - 6.7e-29 100.3 0.0 1.1e-28 99.7 0.0 1.3 1 0 0 1 1 1 1 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 CP013735_00015 - 0.0015 18.6 0.0 0.0031 17.6 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 CP013735_00015 - 0.026 14.1 0.3 0.3 10.7 0.0 2.1 2 0 0 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 CP013735_00015 - 0.081 12.9 0.1 0.22 11.5 0.0 1.7 1 1 0 1 1 1 0 Family of unknown function (DUF5512) DUF3895 PF13034.6 CP013735_00016 - 0.047 13.7 0.5 0.19 11.7 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3895) SSB PF00436.25 CP013735_00017 - 7e-25 87.1 0.1 8.8e-25 86.8 0.1 1.1 1 0 0 1 1 1 1 Single-strand binding protein family IF2_N PF04760.15 CP013735_00018 - 0.00029 20.6 7.3 0.00049 19.9 2.0 2.3 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 CP013735_00018 - 0.018 15.6 1.1 0.021 15.3 1.1 1.1 1 0 0 1 1 1 0 FliG N-terminal domain HTH_16 PF12645.7 CP013735_00018 - 0.041 13.9 2.0 0.38 10.8 0.4 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain PSK_trans_fac PF07704.11 CP013735_00018 - 0.088 13.6 0.3 2.2 9.1 0.1 2.1 2 0 0 2 2 2 0 Rv0623-like transcription factor T4SS PF07996.11 CP013735_00019 - 4.7e-28 98.9 14.1 6.1e-28 98.6 14.1 1.1 1 0 0 1 1 1 1 Type IV secretion system proteins DUF3045 PF11243.8 CP013735_00019 - 0.0059 16.7 0.7 0.02 15.0 0.2 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 CP013735_00019 - 0.011 16.4 5.4 0.011 16.4 5.4 2.4 2 1 1 3 3 3 0 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 CP013735_00019 - 0.066 12.7 0.2 7.2 6.2 0.1 2.6 2 0 0 2 2 2 0 KNOX2 domain VWA_2 PF13519.6 CP013735_00019 - 0.069 13.8 0.9 0.069 13.8 0.9 2.0 2 1 0 2 2 2 0 von Willebrand factor type A domain TrbL PF04610.14 CP013735_00020 - 2.8e-30 105.7 31.4 2.8e-30 105.7 31.4 1.7 2 0 0 2 2 2 1 TrbL/VirB6 plasmid conjugal transfer protein Trep_dent_lipo PF09710.10 CP013735_00021 - 0.016 14.1 0.0 0.016 14.1 0.0 1.2 1 0 0 1 1 1 0 Treponema clustered lipoprotein (Trep_dent_lipo) VirB8 PF04335.13 CP013735_00022 - 2e-52 178.1 0.5 2.2e-52 178.0 0.5 1.0 1 0 0 1 1 1 1 VirB8 protein OppC_N PF12911.7 CP013735_00022 - 0.012 15.6 0.7 0.025 14.6 0.7 1.5 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 CP013735_00023 - 2e-54 184.5 1.5 3.3e-54 183.8 1.5 1.3 1 1 0 1 1 1 1 Conjugal transfer protein DUF4354 PF14263.6 CP013735_00023 - 0.072 12.9 0.5 0.16 11.8 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4354) TrbI PF03743.14 CP013735_00024 - 3.3e-48 164.0 0.1 5.4e-48 163.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 CP013735_00024 - 0.028 13.5 0.1 0.044 12.9 0.1 1.2 1 0 0 1 1 1 0 HaeIII restriction endonuclease T2SSE PF00437.20 CP013735_00025 - 6.3e-54 182.9 0.0 7.3e-54 182.7 0.0 1.0 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 CP013735_00025 - 6e-05 23.6 0.0 0.00012 22.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter FtsK_SpoIIIE PF01580.18 CP013735_00025 - 0.00016 21.2 0.0 0.00025 20.5 0.0 1.2 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_7 PF12775.7 CP013735_00025 - 0.00021 20.8 0.0 0.00037 20.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_22 PF13401.6 CP013735_00025 - 0.0014 18.9 0.0 0.0025 18.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 CP013735_00025 - 0.0026 17.5 0.0 0.0052 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain DEAD PF00270.29 CP013735_00025 - 0.003 17.3 0.0 0.0047 16.7 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase TsaE PF02367.17 CP013735_00025 - 0.0036 17.3 0.0 0.0072 16.3 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 CP013735_00025 - 0.0048 15.9 0.0 0.0071 15.3 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain NACHT PF05729.12 CP013735_00025 - 0.0072 16.3 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Septin PF00735.18 CP013735_00025 - 0.0086 15.4 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 Septin ATPase_2 PF01637.18 CP013735_00025 - 0.0087 16.0 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 CP013735_00025 - 0.018 14.8 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain ResIII PF04851.15 CP013735_00025 - 0.019 15.0 0.0 0.041 13.9 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 CP013735_00025 - 0.021 13.7 0.0 0.033 13.1 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 CP013735_00025 - 0.023 14.8 0.1 0.046 13.8 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_29 PF13555.6 CP013735_00025 - 0.024 14.4 0.0 0.053 13.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 CP013735_00025 - 0.032 14.3 0.1 0.1 12.6 0.0 1.9 2 0 0 2 2 1 0 AAA domain Pox_A32 PF04665.12 CP013735_00025 - 0.035 13.6 0.0 0.056 12.9 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein RNA_helicase PF00910.22 CP013735_00025 - 0.036 14.4 0.0 0.1 13.0 0.0 1.8 2 0 0 2 2 2 0 RNA helicase ATP_bind_1 PF03029.17 CP013735_00025 - 0.037 13.8 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 CP013735_00025 - 0.039 13.2 0.0 0.067 12.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin PRK PF00485.18 CP013735_00025 - 0.051 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 CP013735_00025 - 0.063 11.9 0.0 0.085 11.5 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_16 PF13191.6 CP013735_00025 - 0.064 13.6 0.0 0.099 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Microtub_bd PF16796.5 CP013735_00025 - 0.084 12.8 0.3 0.22 11.4 0.3 1.7 1 1 0 1 1 1 0 Microtubule binding MobB PF03205.14 CP013735_00025 - 0.088 12.7 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T4SS-DNA_transf PF02534.14 CP013735_00026 - 1e-104 351.0 0.1 1.5e-104 350.4 0.1 1.2 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 CP013735_00026 - 9.3e-25 87.0 0.0 2.1e-24 85.9 0.0 1.6 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 CP013735_00026 - 1.9e-14 53.4 0.0 1.3e-10 40.8 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 CP013735_00026 - 0.047 13.8 0.1 0.11 12.6 0.1 1.6 1 0 0 1 1 1 0 Yos9 dimerzation domain Cag12 PF13117.6 CP013735_00027 - 5.5e-17 62.1 0.4 6.9e-17 61.8 0.4 1.1 1 0 0 1 1 1 1 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 CP013735_00027 - 0.068 13.0 0.2 0.19 11.5 0.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2689) TrbM PF07424.11 CP013735_00028 - 8.4e-36 123.3 1.7 1.1e-35 122.9 1.7 1.1 1 0 0 1 1 1 1 TrbM PRELI PF04707.14 CP013735_00029 - 0.038 13.8 0.4 0.038 13.8 0.4 1.8 2 0 0 2 2 2 0 PRELI-like family Redoxin PF08534.10 CP013735_00031 - 0.054 13.2 0.9 0.34 10.6 0.1 2.3 2 0 0 2 2 2 0 Redoxin Topoisom_bac PF01131.20 CP013735_00032 - 1.1e-97 327.7 8.1 1.6e-97 327.2 8.1 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 CP013735_00032 - 4.4e-12 46.1 2.6 6.4e-12 45.6 0.1 2.7 2 1 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.19 CP013735_00032 - 5.6e-08 32.4 15.3 1.7e-05 24.5 5.5 2.8 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 CP013735_00032 - 1e-05 25.7 2.3 0.043 14.1 0.0 2.7 3 0 0 3 3 3 2 zinc-ribbon Zn-ribbon_8 PF09723.10 CP013735_00032 - 0.012 15.7 1.3 5 7.3 0.1 2.6 2 0 0 2 2 2 0 Zinc ribbon domain zf-H2C2_2 PF13465.6 CP013735_00032 - 0.028 14.9 8.1 1.2 9.7 0.2 2.9 3 0 0 3 3 3 0 Zinc-finger double domain FLYWCH PF04500.16 CP013735_00032 - 0.039 14.1 3.0 1.3 9.2 1.0 2.6 2 0 0 2 2 2 0 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 CP013735_00032 - 0.056 14.3 2.8 7.9 7.6 0.2 2.7 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ribbon_3 PF13248.6 CP013735_00032 - 0.087 12.3 2.7 3.4 7.2 0.2 2.6 2 0 0 2 2 2 0 zinc-ribbon domain EF-hand_8 PF13833.6 CP013735_00032 - 0.094 12.6 0.0 0.3 11.0 0.0 1.9 1 0 0 1 1 1 0 EF-hand domain pair zf-LITAF-like PF10601.9 CP013735_00032 - 0.095 13.0 4.5 1 9.6 3.7 2.4 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain PcfJ PF14284.6 CP013735_00033 - 0.00012 22.0 2.7 0.00031 20.6 2.7 1.7 1 0 0 1 1 1 1 PcfJ-like protein Intein_splicing PF14890.6 CP013735_00033 - 0.035 14.0 4.6 0.25 11.3 4.6 2.5 1 1 0 1 1 1 0 Intein splicing domain Ribonuc_2-5A PF06479.12 CP013735_00034 - 0.022 14.9 1.5 0.03 14.5 1.5 1.5 1 1 0 1 1 1 0 Ribonuclease 2-5A DUF5311 PF17238.2 CP013735_00034 - 0.053 13.4 0.0 0.062 13.2 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5311) Phage_portal PF04860.12 CP014569_00001 - 3.7e-29 101.9 0.1 4.8e-29 101.5 0.1 1.1 1 0 0 1 1 1 1 Phage portal protein DUF3770 PF12603.8 CP014569_00001 - 0.036 13.6 0.1 0.061 12.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3770) Terminase_6 PF03237.15 CP014569_00002 - 8.4e-17 61.6 0.0 1.6e-16 60.6 0.0 1.5 1 0 0 1 1 1 1 Terminase-like family Terminase_6C PF17289.2 CP014569_00002 - 1.9e-07 31.3 0.0 4.6e-07 30.1 0.0 1.7 1 0 0 1 1 1 1 Terminase RNaseH-like domain HTH_Tnp_1 PF01527.20 CP014569_00002 - 1.4e-06 28.5 0.2 4.1e-06 27.0 0.2 1.8 1 0 0 1 1 1 1 Transposase HTH_3 PF01381.22 CP014569_00002 - 0.00044 20.2 0.0 0.034 14.2 0.0 3.5 3 1 1 4 4 4 1 Helix-turn-helix HTH_28 PF13518.6 CP014569_00002 - 0.0027 17.8 0.0 0.0064 16.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 CP014569_00002 - 0.0043 17.0 0.0 0.011 15.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_7 PF02796.15 CP014569_00002 - 0.035 14.2 0.0 0.086 12.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 CP014569_00002 - 0.061 13.1 0.0 0.22 11.4 0.0 2.0 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 CP014569_00002 - 0.081 12.3 0.0 0.19 11.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 YajC PF02699.15 CP014569_00004 - 0.044 13.7 0.0 0.045 13.6 0.0 1.0 1 0 0 1 1 1 0 Preprotein translocase subunit FeoB_associated PF12669.7 CP014569_00004 - 0.057 13.8 0.0 0.068 13.6 0.0 1.1 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein Phage_Mu_F PF04233.14 CP014569_00007 - 1.2e-05 26.0 0.0 3.5e-05 24.5 0.0 1.9 1 1 0 1 1 1 1 Phage Mu protein F like protein SieB PF14163.6 CP014569_00007 - 0.065 12.7 5.5 0.023 14.2 2.0 1.9 2 0 0 2 2 2 0 Super-infection exclusion protein B Zn_Tnp_IS1595 PF12760.7 CP014569_00008 - 0.0013 18.7 1.5 0.0017 18.3 1.5 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Elf1 PF05129.13 CP014569_00008 - 0.0049 16.9 0.3 0.0058 16.7 0.3 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Cys_rich_KTR PF14205.6 CP014569_00008 - 0.097 12.5 5.1 0.16 11.8 5.1 1.5 1 1 0 1 1 1 0 Cysteine-rich KTR DUF1018 PF06252.12 CP014569_00009 - 0.02 15.8 0.1 0.036 15.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1018) OrfB_IS605 PF01385.19 CP014569_00012 - 1.2e-24 86.8 0.2 1.2e-24 86.8 0.2 2.3 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 CP014569_00012 - 3.3e-18 65.4 1.3 3.3e-18 65.4 1.3 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain VPS28 PF03997.12 CP014569_00012 - 0.051 13.3 0.4 0.051 13.3 0.4 2.4 2 1 1 3 3 3 0 VPS28 protein HTH_OrfB_IS605 PF12323.8 CP014569_00012 - 0.072 12.6 0.2 0.2 11.2 0.2 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Y1_Tnp PF01797.16 CP014569_00013 - 1.5e-38 131.6 0.0 2.3e-38 131.0 0.0 1.3 1 0 0 1 1 1 1 Transposase IS200 like DUF1353 PF07087.11 CP014569_00014 - 1.3e-18 66.4 0.0 1.6e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1353) ExsD PF16806.5 CP014569_00015 - 0.0064 16.4 1.8 0.0096 15.9 1.8 1.2 1 0 0 1 1 1 1 Antiactivator protein ExsD CBM_X2 PF03442.14 CP014569_00015 - 0.032 14.3 1.5 0.47 10.6 0.3 2.5 2 0 0 2 2 2 0 Carbohydrate binding domain X2 YlqD PF11068.8 CP014569_00015 - 0.052 13.9 4.1 0.084 13.2 4.1 1.4 1 0 0 1 1 1 0 YlqD protein HSBP1 PF06825.12 CP014569_00015 - 0.065 13.1 0.4 1.3 8.9 0.1 2.6 2 1 0 2 2 2 0 Heat shock factor binding protein 1 Spc7 PF08317.11 CP014569_00015 - 0.098 11.5 10.1 0.14 11.0 10.1 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Phage_holin_3_3 PF16083.5 CP014569_00018 - 1.2e-10 41.3 4.9 1.6e-10 40.9 4.9 1.1 1 0 0 1 1 1 1 LydA holin phage, holin superfamily III PG_binding_3 PF09374.10 CP014569_00019 - 2.5e-11 43.7 0.0 3.9e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 Predicted Peptidoglycan domain Glyco_hydro_108 PF05838.12 CP014569_00019 - 5e-08 33.3 0.1 9.4e-08 32.4 0.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase 108 MethyltransfD12 PF02086.15 CP014569_00020 - 1.3e-28 100.4 4.0 2.2e-28 99.7 4.0 1.4 1 1 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Zea_mays_MuDR PF05928.11 CP014569_00020 - 0.055 13.1 0.1 0.086 12.5 0.1 1.3 1 0 0 1 1 1 0 Zea mays MURB-like protein (MuDR) HTH_26 PF13443.6 CP014569_00021 - 0.0001 22.7 0.1 0.66 10.4 0.0 3.1 2 1 1 3 3 3 2 Cro/C1-type HTH DNA-binding domain HTH_28 PF13518.6 CP014569_00021 - 0.0042 17.2 0.0 1.5 9.0 0.0 3.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_3 PF01381.22 CP014569_00021 - 0.013 15.6 1.7 6.7 6.8 0.0 3.5 3 1 1 4 4 4 0 Helix-turn-helix Phage_terminase PF10668.9 CP014569_00021 - 0.015 15.3 0.5 16 5.6 0.0 3.0 3 0 0 3 3 3 0 Phage terminase small subunit DUF4004 PF13171.6 CP014569_00021 - 0.021 15.1 3.4 9.3 6.4 0.0 3.1 2 1 0 3 3 3 0 Protein of unknown function (DUF4004) DUF2862 PF11061.8 CP014569_00021 - 0.053 13.4 0.1 9.8 6.1 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2862) HTH_23 PF13384.6 CP014569_00021 - 0.062 13.1 0.0 24 4.9 0.0 3.3 3 1 0 3 3 3 0 Homeodomain-like domain DUF2569 PF10754.9 CP014569_00024 - 0.026 15.0 0.4 0.042 14.3 0.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2569) PMT_4TMC PF16192.5 CP014569_00024 - 0.06 12.9 0.3 0.083 12.5 0.3 1.2 1 0 0 1 1 1 0 C-terminal four TMM region of protein-O-mannosyltransferase SHE3 PF17078.5 CP014569_00025 - 0.0065 16.2 10.7 0.0078 16.0 10.7 1.0 1 0 0 1 1 1 1 SWI5-dependent HO expression protein 3 F420_oxidored PF03807.17 CP014569_00025 - 0.009 16.6 0.5 0.011 16.3 0.5 1.2 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent SKIP_SNW PF02731.15 CP014569_00025 - 0.031 13.9 2.1 0.042 13.5 2.1 1.1 1 0 0 1 1 1 0 SKIP/SNW domain EutB PF06751.11 CP014569_00025 - 0.037 12.8 0.6 0.039 12.8 0.6 1.0 1 0 0 1 1 1 0 Ethanolamine ammonia lyase large subunit (EutB) FB_lectin PF07367.11 CP014569_00025 - 0.072 13.0 0.3 0.094 12.7 0.3 1.1 1 0 0 1 1 1 0 Fungal fruit body lectin COX8 PF02285.15 CP014569_00027 - 0.016 15.1 0.0 0.036 13.9 0.0 1.6 1 0 0 1 1 1 0 Cytochrome oxidase c subunit VIII O-antigen_lig PF13425.6 CP014569_00028 - 0.0041 16.0 3.8 0.0059 15.4 3.8 1.2 1 0 0 1 1 1 1 O-antigen ligase like membrane protein Insulin_TMD PF17870.1 CP014569_00028 - 0.035 14.2 1.3 0.035 14.2 1.3 1.7 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment TMEM51 PF15345.6 CP014569_00028 - 0.079 12.8 0.1 0.13 12.1 0.1 1.3 1 1 0 1 1 1 0 Transmembrane protein 51 RRXRR PF14239.6 CP014569_00031 - 1.5e-55 187.8 5.1 2e-55 187.3 5.1 1.2 1 0 0 1 1 1 1 RRXRR protein HNH_5 PF14279.6 CP014569_00031 - 4e-12 45.8 1.5 7.1e-12 45.0 1.5 1.4 1 0 0 1 1 1 1 HNH endonuclease HNH PF01844.23 CP014569_00031 - 4.7e-09 36.3 3.1 9e-09 35.4 3.1 1.4 1 0 0 1 1 1 1 HNH endonuclease HNH_4 PF13395.6 CP014569_00031 - 8.2e-09 35.2 0.1 2.4e-08 33.8 0.1 1.8 1 0 0 1 1 1 1 HNH endonuclease HdeA PF06411.11 CP014569_00035 - 0.057 13.6 0.2 0.087 13.0 0.2 1.3 1 0 0 1 1 1 0 HdeA/HdeB family Chlorosome_CsmC PF11098.8 CP014569_00038 - 0.0041 17.1 0.0 0.0052 16.8 0.0 1.3 1 0 0 1 1 1 1 Chlorosome envelope protein C Tup_N PF08581.10 CP014569_00038 - 0.017 15.4 1.7 0.017 15.4 1.7 3.1 1 1 1 2 2 2 0 Tup N-terminal CBP_BcsR PF10945.8 CP014569_00038 - 0.031 13.7 0.3 0.067 12.7 0.3 1.5 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsR Spectrin_like PF18373.1 CP014569_00038 - 0.033 14.3 3.6 0.23 11.6 0.3 3.0 1 1 2 3 3 3 0 Spectrin like domain APG6_N PF17675.1 CP014569_00038 - 0.042 14.4 6.1 0.28 11.7 0.6 2.1 1 1 1 2 2 2 0 Apg6 coiled-coil region TMPIT PF07851.13 CP014569_00038 - 0.059 12.6 6.3 0.097 11.9 2.1 2.0 1 1 1 2 2 2 0 TMPIT-like protein DUF948 PF06103.11 CP014569_00038 - 0.099 12.9 2.4 0.25 11.6 0.5 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) SLT PF01464.20 CP014569_00040 - 8.9e-12 44.7 0.0 1.4e-11 44.0 0.0 1.3 1 1 0 1 1 1 1 Transglycosylase SLT domain Leukocidin PF07968.12 CP014569_00040 - 0.00012 22.1 0.2 0.0002 21.3 0.2 1.4 1 0 0 1 1 1 1 Leukocidin/Hemolysin toxin family DUF226 PF02890.14 CP014569_00042 - 0.017 15.1 0.9 0.017 15.1 0.9 3.2 3 1 0 3 3 3 0 Borrelia family of unknown function DUF226 Y1_Tnp PF01797.16 CP014569_00043 - 1.5e-38 131.6 0.0 2.3e-38 131.0 0.0 1.3 1 0 0 1 1 1 1 Transposase IS200 like OrfB_IS605 PF01385.19 CP014569_00044 - 1.2e-24 86.8 0.2 1.2e-24 86.8 0.2 2.3 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 CP014569_00044 - 3.3e-18 65.4 1.3 3.3e-18 65.4 1.3 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain VPS28 PF03997.12 CP014569_00044 - 0.051 13.3 0.4 0.051 13.3 0.4 2.4 2 1 1 3 3 3 0 VPS28 protein HTH_OrfB_IS605 PF12323.8 CP014569_00044 - 0.073 12.6 0.2 0.2 11.2 0.2 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain CshA_NR2 PF18651.1 CP014569_00046 - 0.099 11.8 0.2 0.24 10.5 0.0 1.6 2 0 0 2 2 2 0 Surface adhesin CshA non-repetitive domain 2 DUF2357 PF09823.9 CP014569_00049 - 0.098 11.9 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2357) DUF4214 PF13946.6 CP014569_00051 - 0.0004 20.4 4.0 0.00042 20.3 0.1 3.2 4 0 0 4 4 4 1 Domain of unknown function (DUF4214) DUF3784 PF12650.7 CP014569_00052 - 0.0045 17.2 0.7 0.0048 17.1 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) TMCCDC2 PF15844.5 CP014569_00052 - 0.021 14.7 0.7 0.021 14.7 0.7 1.1 1 0 0 1 1 1 0 Transmembrane and coiled-coil domain-containing protein 2 DUF1240 PF06836.12 CP014569_00052 - 0.052 14.1 1.8 0.13 12.8 1.8 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1240) DUF2321 PF10083.9 CP014569_00053 - 0.05 13.2 0.1 0.053 13.2 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) Phage_cap_P2 PF05125.12 CP014569_00058 - 9.9e-08 31.3 2.5 2e-06 27.0 2.5 2.1 1 1 0 1 1 1 1 Phage major capsid protein, P2 family Tctex-1 PF03645.13 CP014569_00058 - 0.014 15.7 1.3 0.14 12.4 0.0 2.9 2 2 0 2 2 2 0 Tctex-1 family Peptidase_S78_2 PF14550.6 CP014569_00059 - 7.4e-34 116.4 0.1 1.2e-33 115.8 0.1 1.3 1 0 0 1 1 1 1 Putative phage serine protease XkdF Holin_BhlA PF10960.8 CP014569_00059 - 0.026 14.5 1.7 0.061 13.3 1.7 1.6 1 0 0 1 1 1 0 BhlA holin family Abi_C PF14355.6 CP014569_00059 - 0.059 13.5 0.7 13 6.0 0.0 3.2 2 1 1 3 3 3 0 Abortive infection C-terminus Relaxase PF03432.14 CP020480_00002 - 4.2e-07 29.8 1.0 4.2e-07 29.8 1.0 2.8 2 1 1 3 3 3 1 Relaxase/Mobilisation nuclease domain DUF1673 PF07895.11 CP020480_00003 - 0.0051 16.5 3.4 0.0051 16.5 3.4 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1673) DUF782 PF05614.11 CP020480_00003 - 0.0068 16.8 0.1 0.011 16.1 0.1 1.4 1 0 0 1 1 1 1 Circovirus protein of unknown function (DUF782) MCU PF04678.13 CP020480_00003 - 0.047 13.8 0.3 0.07 13.2 0.3 1.3 1 0 0 1 1 1 0 Mitochondrial calcium uniporter Acyl_transf_3 PF01757.22 CP020480_00003 - 0.074 12.1 5.8 0.16 11.0 6.0 1.4 1 1 0 1 1 1 0 Acyltransferase family Adeno_terminal PF02459.15 CP020480_00003 - 0.097 11.0 0.5 0.11 10.9 0.5 1.1 1 0 0 1 1 1 0 Adenoviral DNA terminal protein AAA_31 PF13614.6 CP020480_00008 - 1.9e-11 44.2 4.9 6.7e-11 42.4 2.8 2.6 1 1 1 2 2 2 1 AAA domain MipZ PF09140.11 CP020480_00008 - 2.6e-11 43.3 1.7 3.3e-06 26.6 1.0 3.1 1 1 1 2 2 2 2 ATPase MipZ CbiA PF01656.23 CP020480_00008 - 4.3e-09 36.5 0.1 6.4e-09 35.9 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 CP020480_00008 - 0.00014 21.2 0.4 0.00081 18.7 0.0 2.1 2 1 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 CP020480_00008 - 0.0011 18.3 0.1 0.85 8.9 0.0 2.1 2 0 0 2 2 2 2 VirC1 protein ABC2_membrane_3 PF12698.7 CP020480_00008 - 0.0019 17.4 0.9 0.0021 17.2 0.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein AAA_24 PF13479.6 CP020480_00008 - 0.0035 17.1 1.2 0.0061 16.3 0.1 1.8 2 1 0 2 2 2 1 AAA domain ParA PF10609.9 CP020480_00008 - 0.004 16.7 0.0 0.0072 15.8 0.0 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ATP_bind_1 PF03029.17 CP020480_00008 - 0.019 14.8 0.1 0.068 13.0 0.0 1.9 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein Fic PF02661.18 CP020480_00009 - 3.2e-15 56.8 0.1 7.3e-15 55.6 0.1 1.6 1 0 0 1 1 1 1 Fic/DOC family IL22 PF14565.6 CP020480_00009 - 0.018 15.3 0.9 1.5 9.1 0.0 2.8 2 1 1 3 3 3 0 Interleukin 22 IL-10-related T-cell-derived-inducible factor CRISPR_Cas2 PF09827.9 CP020480_00011 - 0.00069 19.8 1.5 0.0022 18.1 0.0 2.3 1 1 1 2 2 2 1 CRISPR associated protein Cas2 RRM_1 PF00076.22 CP020480_00011 - 0.0021 17.8 0.5 0.0083 15.9 0.1 2.1 2 0 0 2 2 2 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LPD11 PF18824.1 CP020480_00011 - 0.085 12.9 1.8 0.17 12.0 0.4 2.2 3 0 0 3 3 3 0 Large polyvalent protein-associated domain 11 YopX PF09643.10 CP020480_00013 - 1.4e-08 34.8 0.5 1.4e-08 34.8 0.5 2.2 1 1 1 2 2 2 1 YopX protein Topoisom_bac PF01131.20 CP020480_00014 - 3.8e-97 325.9 2.9 4.8e-97 325.6 2.9 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 CP020480_00014 - 6.8e-12 45.5 0.3 3.4e-11 43.3 0.1 2.4 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.19 CP020480_00014 - 2.3e-07 30.5 20.4 0.001 18.8 4.6 2.5 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 CP020480_00014 - 0.00043 20.5 0.2 0.69 10.2 0.0 2.4 2 0 0 2 2 2 2 zinc-ribbon Zn_ribbon_SprT PF17283.2 CP020480_00014 - 0.014 15.2 1.1 0.11 12.4 0.2 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Toprim_2 PF13155.6 CP020480_00014 - 0.034 14.6 0.2 0.68 10.4 0.1 2.6 2 0 0 2 2 2 0 Toprim-like Zn-ribbon_8 PF09723.10 CP020480_00014 - 0.082 13.0 0.7 11 6.2 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Latarcin PF10279.9 CP020480_00016 - 0.016 15.6 1.6 0.66 10.4 1.6 3.5 1 1 0 1 1 1 0 Latarcin precursor Lipase_GDSL PF00657.22 CP020480_00016 - 0.033 14.2 1.1 0.067 13.2 0.9 1.6 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase T3SS_basalb_I PF17001.5 CP020480_00016 - 0.078 13.6 4.2 1.7 9.3 0.5 2.8 2 1 0 2 2 2 0 Type III secretion basal body protein I, YscI, HrpB, PscI TrbM PF07424.11 CP020480_00017 - 3.4e-39 134.3 1.4 4.3e-39 133.9 1.4 1.1 1 0 0 1 1 1 1 TrbM Cag12 PF13117.6 CP020480_00018 - 1.1e-16 61.2 0.1 1.4e-16 60.7 0.1 1.1 1 0 0 1 1 1 1 Cag pathogenicity island protein Cag12 LPAM_2 PF13627.6 CP020480_00018 - 0.027 14.3 3.2 0.044 13.6 3.2 1.4 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site T4SS-DNA_transf PF02534.14 CP020480_00019 - 1.1e-109 367.3 0.1 1.5e-109 366.9 0.1 1.1 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 CP020480_00019 - 6.2e-27 94.1 0.0 1.1e-26 93.3 0.0 1.4 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 CP020480_00019 - 1.4e-18 67.0 0.0 3.3e-13 49.3 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain Njmu-R1 PF15053.6 CP020480_00021 - 0.0055 15.9 1.7 0.0081 15.3 1.7 1.3 1 0 0 1 1 1 1 Mjmu-R1-like protein family T2SSE PF00437.20 CP020480_00022 - 5.1e-54 183.2 0.0 6.4e-54 182.8 0.0 1.0 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.6 CP020480_00022 - 4.9e-05 23.6 0.0 9.4e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 CP020480_00022 - 0.00012 22.6 0.0 0.00029 21.4 0.0 1.6 1 0 0 1 1 1 1 ABC transporter FtsK_SpoIIIE PF01580.18 CP020480_00022 - 0.00021 20.7 0.0 0.00034 20.0 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_7 PF12775.7 CP020480_00022 - 0.00062 19.3 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_23 PF13476.6 CP020480_00022 - 0.0028 18.2 1.3 0.0028 18.2 1.3 1.9 1 1 1 2 2 2 1 AAA domain TsaE PF02367.17 CP020480_00022 - 0.003 17.5 0.0 0.0064 16.5 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Pox_A32 PF04665.12 CP020480_00022 - 0.003 17.0 0.0 0.0048 16.4 0.0 1.3 1 0 0 1 1 1 1 Poxvirus A32 protein AAA_15 PF13175.6 CP020480_00022 - 0.0035 17.1 2.5 0.0035 17.1 2.5 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_24 PF13479.6 CP020480_00022 - 0.0041 16.9 0.0 0.0069 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain Septin PF00735.18 CP020480_00022 - 0.0043 16.4 0.0 0.0072 15.6 0.0 1.3 1 0 0 1 1 1 1 Septin RNA_helicase PF00910.22 CP020480_00022 - 0.012 16.0 0.0 0.043 14.2 0.0 2.0 2 0 0 2 2 1 0 RNA helicase ATPase_2 PF01637.18 CP020480_00022 - 0.013 15.4 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 CP020480_00022 - 0.015 15.2 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_29 PF13555.6 CP020480_00022 - 0.015 15.0 0.0 0.035 13.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.17 CP020480_00022 - 0.015 15.4 1.0 0.03 14.4 0.2 1.9 1 1 1 2 2 2 0 Helicase HerA, central domain DUF815 PF05673.13 CP020480_00022 - 0.021 14.0 0.0 0.031 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DEAD PF00270.29 CP020480_00022 - 0.021 14.6 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 DEAD/DEAH box helicase Mg_chelatase PF01078.21 CP020480_00022 - 0.023 14.1 0.0 0.1 11.9 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ATP_bind_1 PF03029.17 CP020480_00022 - 0.027 14.3 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 CP020480_00022 - 0.045 13.7 0.0 0.072 13.0 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase TrwB_AAD_bind PF10412.9 CP020480_00022 - 0.046 12.6 0.0 0.079 11.8 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Dynamin_N PF00350.23 CP020480_00022 - 0.051 13.6 0.0 0.4 10.7 0.0 2.2 2 0 0 2 2 2 0 Dynamin family ResIII PF04851.15 CP020480_00022 - 0.055 13.5 0.1 0.12 12.4 0.1 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit SMC_N PF02463.19 CP020480_00022 - 0.063 12.7 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain PduV-EutP PF10662.9 CP020480_00022 - 0.07 12.9 0.0 0.7 9.6 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 CP020480_00022 - 0.073 13.6 0.0 0.14 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 CP020480_00022 - 0.089 12.5 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MobB PF03205.14 CP020480_00022 - 0.09 12.7 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.6 CP020480_00022 - 0.091 12.8 0.3 0.21 11.6 0.0 1.8 2 0 0 2 2 1 0 AAA domain GvpD PF07088.11 CP020480_00022 - 0.093 11.3 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 GvpD gas vesicle protein TrbI PF03743.14 CP020480_00024 - 2.2e-47 161.4 0.1 2.5e-47 161.2 0.1 1.0 1 0 0 1 1 1 1 Bacterial conjugation TrbI-like protein DUF5345 PF17280.2 CP020480_00025 - 0.01 15.8 0.1 0.018 15.0 0.1 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5345) DUF3671 PF12420.8 CP020480_00025 - 0.029 14.4 0.2 0.036 14.1 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function Cyt_bd_oxida_I PF01654.17 CP020480_00025 - 0.074 11.7 0.0 0.079 11.6 0.0 1.0 1 0 0 1 1 1 0 Cytochrome bd terminal oxidase subunit I CagX PF03524.15 CP020480_00026 - 7.1e-54 182.7 0.7 1.4e-53 181.7 0.7 1.5 1 1 0 1 1 1 1 Conjugal transfer protein VirB8 PF04335.13 CP020480_00027 - 8.4e-50 169.6 0.1 1e-49 169.3 0.1 1.0 1 0 0 1 1 1 1 VirB8 protein VASP_tetra PF08776.11 CP020480_00028 - 0.063 12.9 6.4 0.16 11.5 6.4 1.7 1 0 0 1 1 1 0 VASP tetramerisation domain TrbL PF04610.14 CP020480_00030 - 1.2e-32 113.5 25.3 1.6e-32 113.0 25.3 1.3 1 0 0 1 1 1 1 TrbL/VirB6 plasmid conjugal transfer protein T4SS PF07996.11 CP020480_00031 - 2e-23 83.9 15.9 2.4e-23 83.6 15.9 1.1 1 0 0 1 1 1 1 Type IV secretion system proteins CHASE4 PF05228.13 CP020480_00031 - 0.051 13.8 5.7 1 9.6 0.2 2.8 2 1 1 3 3 3 0 CHASE4 domain AChE_tetra PF08674.10 CP020480_00031 - 0.096 12.4 1.2 0.5 10.1 0.1 2.3 2 0 0 2 2 2 0 Acetylcholinesterase tetramerisation domain Phage_pRha PF09669.10 CP020480_00032 - 1.4e-29 102.4 0.0 2.4e-29 101.7 0.0 1.4 1 0 0 1 1 1 1 Phage regulatory protein Rha (Phage_pRha) CagE_TrbE_VirB PF03135.14 CP020480_00033 - 2.5e-43 148.6 0.5 6.2e-43 147.3 0.5 1.7 1 0 0 1 1 1 1 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 CP020480_00033 - 1.2e-19 70.3 2.0 2.1e-19 69.5 2.0 1.4 1 0 0 1 1 1 1 Type IV secretory pathway, VirB3-like protein TrbC PF04956.13 CP020480_00034 - 2.3e-16 59.8 8.3 2.5e-16 59.7 8.3 1.0 1 0 0 1 1 1 1 TrbC/VIRB2 family ThrE PF06738.12 CP020480_00034 - 0.025 14.0 2.1 0.029 13.8 2.1 1.1 1 0 0 1 1 1 0 Putative threonine/serine exporter CRISPR_Cas2 PF09827.9 CP020480_00036 - 0.0005 20.2 1.3 0.00061 19.9 0.1 1.7 2 0 0 2 2 2 1 CRISPR associated protein Cas2 Resolvase PF00239.21 CP020480_00037 - 1e-32 113.2 0.6 1.3e-32 112.9 0.6 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_38 PF13936.6 CP020480_00037 - 0.0011 18.6 1.4 0.12 12.1 0.1 2.9 3 0 0 3 3 3 2 Helix-turn-helix domain SseC PF04888.12 CP020480_00038 - 0.0012 18.6 1.4 0.0012 18.6 1.4 1.8 2 0 0 2 2 2 1 Secretion system effector C (SseC) like family Leu_Phe_trans PF03588.14 CP020480_00038 - 0.034 13.7 0.1 0.048 13.2 0.1 1.2 1 0 0 1 1 1 0 Leucyl/phenylalanyl-tRNA protein transferase AAA_25 PF13481.6 CP020480_00039 - 6.7e-16 58.4 0.0 1.3e-15 57.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 CP020480_00039 - 0.00036 20.0 0.0 0.0021 17.4 0.0 2.1 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 CP020480_00039 - 0.0014 18.4 0.0 0.017 14.8 0.0 2.4 2 0 0 2 2 2 1 IstB-like ATP binding protein ATPase PF06745.13 CP020480_00039 - 0.012 15.0 0.0 0.044 13.1 0.0 2.1 2 1 0 2 2 2 0 KaiC AAA PF00004.29 CP020480_00039 - 0.076 13.4 0.3 0.89 10.0 0.0 2.6 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Toprim_3 PF13362.6 CP020480_00040 - 4.6e-09 36.5 0.0 7.5e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 CP020480_00040 - 0.001 19.5 0.1 0.0023 18.4 0.1 1.5 1 0 0 1 1 1 1 Toprim domain Fic PF02661.18 CP020480_00041 - 3.3e-17 63.2 0.1 9.2e-17 61.7 0.0 1.7 2 0 0 2 2 2 1 Fic/DOC family ANAPC4 PF12896.7 CP020480_00043 - 0.027 14.0 0.1 0.034 13.6 0.1 1.1 1 0 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 4 MSG PF02349.15 CP020480_00043 - 0.071 13.3 4.6 0.094 12.9 4.6 1.2 1 0 0 1 1 1 0 Major surface glycoprotein PDDEXK_4 PF14281.6 CP023447_00001 - 3e-38 131.8 13.1 3e-38 131.8 13.1 2.8 3 0 0 3 3 3 2 PD-(D/E)XK nuclease superfamily Eco57I PF07669.11 CP023447_00002 - 2.1e-19 70.0 0.1 1.2e-18 67.5 0.1 2.4 1 0 0 1 1 1 1 Eco57I restriction-modification methylase TaqI_C PF12950.7 CP023447_00002 - 1.8e-12 47.4 1.7 1.8e-12 47.4 1.7 3.9 4 1 0 4 4 4 1 TaqI-like C-terminal specificity domain Mrr_cat PF04471.12 CP023447_00002 - 0.018 15.1 0.0 0.11 12.5 0.0 2.4 2 0 0 2 2 2 0 Restriction endonuclease ACP_PD PF04336.12 CP023447_00002 - 0.019 15.4 0.2 1.2 9.6 0.1 3.6 1 1 1 2 2 2 0 Acyl carrier protein phosphodiesterase Pentapeptide_3 PF13576.6 CP023447_00003 - 6.7e-11 42.2 11.9 4.9e-09 36.2 2.3 5.6 4 2 1 5 5 5 3 Pentapeptide repeats (9 copies) SIMPL PF04402.14 CP023447_00004 - 3.7e-14 53.7 0.6 4.5e-14 53.4 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) DUF4116 PF13475.6 CP023447_00004 - 0.036 13.8 1.6 0.036 13.8 1.6 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4116) ATR13 PF16829.5 CP023447_00004 - 0.081 13.3 0.5 0.88 10.0 0.0 2.5 2 1 0 2 2 2 0 Avirulence protein ATR13, RxLR effector MFS_1 PF07690.16 CP023447_00005 - 1.1e-42 146.2 39.9 1.1e-42 146.2 39.9 1.7 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 CP023447_00005 - 3.9e-10 39.2 8.9 3.9e-10 39.2 8.9 3.0 1 1 2 3 3 3 1 Sugar (and other) transporter MFS_3 PF05977.13 CP023447_00005 - 2.5e-06 26.2 18.2 3e-06 25.9 18.2 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.6 CP023447_00005 - 1.2e-05 24.0 43.0 0.00059 18.5 22.9 2.7 1 1 2 3 3 3 2 MFS/sugar transport protein DUF2130 PF09903.9 CP023447_00006 - 1.7e-46 158.6 15.9 1.7e-46 158.6 15.9 3.8 1 1 3 4 4 4 1 Uncharacterized protein conserved in bacteria (DUF2130) Cytochrom_C PF00034.21 CP023447_00007 - 3.7e-14 53.6 0.0 1.8e-10 41.8 0.0 3.1 2 1 0 2 2 2 2 Cytochrome c Cytochrome_CBB3 PF13442.6 CP023447_00007 - 5.7e-11 42.6 0.0 2.8e-07 30.7 0.0 2.6 2 0 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III Cytochrome_C7 PF14522.6 CP023447_00007 - 0.016 15.2 0.0 3.1 7.9 0.0 2.2 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c Cytochrom_C550 PF14495.6 CP023447_00007 - 0.022 14.5 0.7 0.11 12.3 0.0 2.3 3 0 0 3 3 3 0 Cytochrome c-550 domain Paired_CXXCH_1 PF09699.10 CP023447_00007 - 0.042 13.6 0.3 7.4 6.4 0.1 2.4 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_c3_2 PF14537.6 CP023447_00007 - 0.094 13.2 0.1 20 5.7 0.0 2.2 2 0 0 2 2 2 0 Cytochrome c3 Peptidase_S49_N PF08496.10 CP023447_00008 - 0.034 14.2 0.3 0.068 13.2 0.3 1.6 1 0 0 1 1 1 0 Peptidase family S49 N-terminal GTP_EFTU PF00009.27 CP023447_00009 - 2.2e-54 184.0 0.4 3.5e-54 183.3 0.4 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 CP023447_00009 - 2.8e-22 78.6 0.0 7.1e-22 77.2 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 CP023447_00009 - 9.2e-11 42.0 1.5 2.4e-10 40.7 1.5 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 CP023447_00009 - 8.2e-07 29.1 0.4 1.6e-06 28.2 0.4 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Septin PF00735.18 CP023447_00009 - 0.00062 19.1 0.2 0.0011 18.3 0.2 1.3 1 0 0 1 1 1 1 Septin Dynamin_N PF00350.23 CP023447_00009 - 0.0046 17.0 0.1 0.05 13.7 0.1 2.2 1 1 0 1 1 1 1 Dynamin family FeoB_N PF02421.18 CP023447_00009 - 0.011 15.3 0.9 0.2 11.2 0.2 3.2 3 1 0 3 3 3 0 Ferrous iron transport protein B SRPRB PF09439.10 CP023447_00009 - 0.049 13.1 1.0 0.12 11.8 0.1 2.1 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit AIG1 PF04548.16 CP023447_00009 - 0.058 12.7 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 AIG1 family EFG_II PF14492.6 CP023447_00009 - 0.085 13.0 0.1 0.21 11.7 0.1 1.7 1 0 0 1 1 1 0 Elongation Factor G, domain II PTS_EIIA_2 PF00359.22 CP023447_00010 - 0.00096 19.1 2.8 0.0016 18.4 2.7 1.5 1 1 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FANCI_S2 PF14676.6 CP023447_00010 - 0.028 14.7 0.9 0.04 14.2 0.9 1.3 1 1 0 1 1 1 0 FANCI solenoid 2 Rotamase PF00639.21 CP023447_00010 - 0.087 13.8 0.1 0.11 13.4 0.1 1.1 1 0 0 1 1 1 0 PPIC-type PPIASE domain Flg_hook PF02120.16 CP023447_00011 - 2.2e-14 53.1 1.0 1.2e-13 50.7 0.3 2.6 2 0 0 2 2 2 1 Flagellar hook-length control protein FliK FlgD_ig PF13860.6 CP023447_00012 - 1.8e-18 66.1 0.1 5.2e-18 64.7 0.1 1.8 1 0 0 1 1 1 1 FlgD Ig-like domain FlgD PF03963.14 CP023447_00012 - 1.1e-16 60.9 11.6 1.1e-16 60.9 11.6 2.3 2 0 0 2 2 2 1 Flagellar hook capping protein - N-terminal region FLgD_tudor PF13861.6 CP023447_00012 - 1.8e-05 24.9 0.0 3.6e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 FlgD Tudor-like domain Flg_bbr_C PF06429.13 CP023447_00013 - 1.2e-19 70.1 4.4 3.4e-19 68.7 1.8 2.9 2 0 0 2 2 2 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 CP023447_00013 - 7.3e-08 32.2 1.9 2.7e-07 30.4 1.9 2.1 2 0 0 2 2 2 1 Flagella basal body rod protein VWA_N PF08399.11 CP023447_00013 - 0.046 14.2 0.0 0.15 12.5 0.0 1.9 1 0 0 1 1 1 0 VWA N-terminal FapA PF03961.13 CP023447_00014 - 4.3e-54 183.8 24.2 4.3e-54 183.8 24.2 1.3 1 1 0 1 1 1 1 Flagellar Assembly Protein A Ribosomal_L1 PF00687.21 CP023447_00015 - 0.013 15.2 0.1 0.015 15.0 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L1p/L10e family Rep_4 PF05797.11 CP023447_00015 - 0.021 14.0 0.5 0.037 13.1 0.3 1.3 1 1 0 1 1 1 0 Yeast trans-acting factor (REP1/REP2) Hemerythrin PF01814.23 CP023447_00016 - 5.9e-08 33.4 3.1 5.9e-08 33.4 3.1 1.6 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain CC2D2AN-C2 PF15625.6 CP023447_00016 - 0.09 12.5 0.1 0.88 9.3 0.0 2.0 2 0 0 2 2 2 0 CC2D2A N-terminal C2 domain Na_sulph_symp PF00939.19 CP023447_00017 - 3.4e-25 89.0 0.1 3.9e-25 88.8 0.1 1.1 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 CP023447_00017 - 0.014 14.6 0.0 0.015 14.5 0.0 1.1 1 0 0 1 1 1 0 Citrate transporter Na_sulph_symp PF00939.19 CP023447_00018 - 4e-09 36.0 1.0 6.8e-09 35.3 1.0 1.4 1 1 0 1 1 1 1 Sodium:sulfate symporter transmembrane region ETRAMP PF09716.10 CP023447_00018 - 0.026 14.6 0.0 0.029 14.4 0.0 1.1 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) Na_sulph_symp PF00939.19 CP023447_00019 - 1.9e-14 53.6 4.1 1.9e-14 53.6 4.1 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 CP023447_00019 - 0.0066 15.7 4.0 0.0085 15.3 4.0 1.3 1 0 0 1 1 1 1 Citrate transporter AGTRAP PF06396.11 CP023447_00019 - 0.095 12.5 1.3 0.1 12.4 1.3 1.0 1 0 0 1 1 1 0 Angiotensin II, type I receptor-associated protein (AGTRAP) Na_sulph_symp PF00939.19 CP023447_00020 - 1.9e-14 53.6 11.4 1.9e-14 53.6 11.4 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region tRNA_Me_trans PF03054.16 CP023447_00021 - 1.2e-108 363.1 1.7 1.4e-108 362.9 1.7 1.0 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.20 CP023447_00021 - 5.6e-07 29.5 0.0 1.4e-06 28.2 0.0 1.6 1 1 0 1 1 1 1 PP-loop family ThiI PF02568.14 CP023447_00021 - 1.4e-06 28.1 0.0 3.5e-05 23.5 0.0 2.3 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 CP023447_00021 - 2.5e-06 27.2 0.1 8.4e-06 25.4 0.1 1.9 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 CP023447_00021 - 3.5e-05 23.0 0.0 0.00049 19.3 0.0 2.2 2 0 0 2 2 2 1 NAD synthase Arginosuc_synth PF00764.19 CP023447_00021 - 0.00027 20.3 0.0 0.00042 19.7 0.0 1.2 1 0 0 1 1 1 1 Arginosuccinate synthase PAPS_reduct PF01507.19 CP023447_00021 - 0.031 14.3 0.0 0.052 13.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Lysine_decarbox PF03641.14 CP023447_00022 - 2.8e-25 88.9 0.0 2.9e-25 88.9 0.0 1.0 1 0 0 1 1 1 1 Possible lysine decarboxylase LDcluster4 PF18306.1 CP023447_00022 - 0.09 12.4 0.0 0.098 12.2 0.0 1.2 1 0 0 1 1 1 0 SLOG cluster4 family LDcluster4 PF18306.1 CP023447_00023 - 7.8e-06 25.6 0.1 9.3e-06 25.3 0.1 1.1 1 0 0 1 1 1 1 SLOG cluster4 family DNA_processg_A PF02481.15 CP023447_00023 - 0.00045 19.5 0.0 0.00046 19.5 0.0 1.1 1 0 0 1 1 1 1 DNA recombination-mediator protein A SKI PF01202.22 CP023447_00023 - 0.029 14.5 0.0 0.031 14.4 0.0 1.1 1 0 0 1 1 1 0 Shikimate kinase Peptidase_C39 PF03412.15 CP023447_00028 - 2e-16 60.0 0.0 2.6e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase C39 family Peptidase_C70 PF12385.8 CP023447_00028 - 0.00052 20.0 0.0 0.00072 19.6 0.0 1.1 1 0 0 1 1 1 1 Papain-like cysteine protease AvrRpt2 AHJR-like PF18743.1 CP023447_00028 - 0.068 12.7 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 REase_AHJR-like FliMN_C PF01052.20 CP023447_00029 - 4.6e-21 74.6 1.5 7.2e-21 74.0 1.5 1.3 1 0 0 1 1 1 1 Type III flagellar switch regulator (C-ring) FliN C-term FliM PF02154.15 CP023447_00030 - 4.8e-75 251.7 1.4 6.9e-75 251.2 1.4 1.2 1 0 0 1 1 1 1 Flagellar motor switch protein FliM FliMN_C PF01052.20 CP023447_00030 - 8e-14 51.4 0.3 1.3e-13 50.7 0.3 1.4 1 0 0 1 1 1 1 Type III flagellar switch regulator (C-ring) FliN C-term DUF3567 PF12091.8 CP023447_00030 - 0.029 14.5 1.3 0.15 12.2 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3567) 7TM_GPCR_Sri PF10327.9 CP023447_00030 - 0.045 12.9 0.1 0.068 12.3 0.1 1.2 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Sri Pertactin PF03212.14 CP023447_00030 - 0.085 12.8 0.0 7.9 6.4 0.0 2.3 2 0 0 2 2 2 0 Pertactin Sigma70_r4 PF04545.16 CP023447_00031 - 2.9e-18 65.1 2.8 8.2e-18 63.7 2.8 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 CP023447_00031 - 1.7e-10 40.5 0.0 2.9e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 CP023447_00031 - 1.6e-08 34.1 2.3 1.6e-08 34.1 2.3 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r3 PF04539.16 CP023447_00031 - 0.00075 19.6 5.5 0.0019 18.3 0.2 3.1 3 1 0 3 3 3 1 Sigma-70 region 3 HTH_23 PF13384.6 CP023447_00031 - 0.0017 18.1 0.1 0.0037 17.0 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain UPF0122 PF04297.14 CP023447_00031 - 0.0018 18.5 4.1 0.0018 18.5 4.1 2.5 3 1 0 3 3 2 1 Putative helix-turn-helix protein, YlxM / p13 like MarR_2 PF12802.7 CP023447_00031 - 0.0027 17.5 0.0 0.0058 16.5 0.0 1.5 1 1 0 1 1 1 1 MarR family HTH_37 PF13744.6 CP023447_00031 - 0.016 15.1 0.5 0.043 13.8 0.5 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Sds3 PF08598.11 CP023447_00031 - 0.028 14.4 9.2 0.051 13.6 9.2 1.4 1 0 0 1 1 1 0 Sds3-like HTH_5 PF01022.20 CP023447_00031 - 0.036 13.9 0.2 0.093 12.6 0.2 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR PF01047.22 CP023447_00031 - 0.04 13.9 2.5 0.042 13.8 0.4 2.1 2 0 0 2 2 2 0 MarR family GerE PF00196.19 CP023447_00031 - 0.041 13.4 0.1 0.075 12.6 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family IF-2B PF01008.17 CP023447_00031 - 0.095 11.9 4.0 1.2 8.3 4.0 2.0 1 1 0 1 1 1 0 Initiation factor 2 subunit family Hema_stalk PF08720.10 CP023447_00032 - 0.002 17.8 0.1 0.0026 17.5 0.1 1.2 1 0 0 1 1 1 1 Influenza C hemagglutinin stalk DUF5531 PF17671.1 CP023447_00032 - 0.04 13.8 2.6 0.056 13.3 2.1 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF5531) ParA PF10609.9 CP023447_00033 - 3.1e-26 92.3 1.4 1.2e-25 90.4 1.4 1.8 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 CP023447_00033 - 2e-19 70.2 0.5 3.7e-19 69.3 0.5 1.4 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 CP023447_00033 - 2.8e-18 66.2 0.0 5.9e-18 65.1 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 CP023447_00033 - 7.6e-12 45.2 1.2 1.9e-06 27.5 0.0 2.0 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 CP023447_00033 - 4.9e-07 29.3 0.0 8.8e-07 28.5 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 CP023447_00033 - 6e-07 29.2 0.0 8.6e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 CP023447_00033 - 2.7e-06 26.8 3.4 6.4e-06 25.6 0.3 2.3 1 1 0 2 2 2 1 Anion-transporting ATPase MeaB PF03308.16 CP023447_00033 - 3.6e-05 22.9 0.3 0.0019 17.2 0.0 2.2 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 CP023447_00033 - 3.9e-05 23.5 0.2 0.00012 21.9 0.2 1.8 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop VirC1 PF07015.11 CP023447_00033 - 0.0003 20.1 0.1 0.0007 19.0 0.1 1.6 1 0 0 1 1 1 1 VirC1 protein AAA_24 PF13479.6 CP023447_00033 - 0.00049 19.9 0.2 0.0011 18.7 0.1 1.7 1 1 1 2 2 2 1 AAA domain AAA_26 PF13500.6 CP023447_00033 - 0.00067 19.5 0.7 0.5 10.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 CP023447_00033 - 0.0024 17.1 0.4 0.13 11.4 0.1 2.2 2 0 0 2 2 2 1 NB-ARC domain NTPase_1 PF03266.15 CP023447_00033 - 0.0048 16.8 0.2 0.027 14.4 0.0 2.1 2 0 0 2 2 2 1 NTPase SRP54 PF00448.22 CP023447_00033 - 0.0073 16.0 1.4 0.015 14.9 0.1 2.0 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain Helicase_RecD PF05127.14 CP023447_00033 - 0.06 13.2 0.8 6.1 6.7 0.3 2.7 1 1 1 2 2 2 0 Helicase AAA_18 PF13238.6 CP023447_00033 - 0.062 13.8 0.4 0.18 12.4 0.4 1.9 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.20 CP023447_00033 - 0.083 12.8 0.1 0.14 12.0 0.1 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase SRP54 PF00448.22 CP023447_00034 - 1.1e-42 145.9 0.1 1.8e-42 145.2 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_22 PF13401.6 CP023447_00034 - 0.00053 20.3 0.0 0.0015 18.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 CP023447_00034 - 0.00098 19.2 0.1 0.0037 17.3 0.1 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase ResIII PF04851.15 CP023447_00034 - 0.0015 18.6 0.0 0.0015 18.6 0.0 2.7 1 1 1 3 3 3 1 Type III restriction enzyme, res subunit AAA_24 PF13479.6 CP023447_00034 - 0.0015 18.3 0.8 0.0044 16.8 0.2 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 CP023447_00034 - 0.0021 17.7 0.1 0.0079 15.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 CP023447_00034 - 0.0022 18.5 0.0 0.0022 18.5 0.0 2.6 2 1 0 2 2 1 1 ABC transporter cobW PF02492.19 CP023447_00034 - 0.0028 17.3 1.4 0.035 13.7 1.4 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Rad17 PF03215.15 CP023447_00034 - 0.0031 17.5 0.9 0.023 14.6 0.0 2.6 2 2 0 2 2 2 1 Rad17 P-loop domain AAA_7 PF12775.7 CP023447_00034 - 0.0031 17.0 0.0 0.0079 15.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region CbiA PF01656.23 CP023447_00034 - 0.007 16.4 3.3 0.07 13.2 0.9 3.0 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.6 CP023447_00034 - 0.0072 16.8 0.9 0.032 14.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 CP023447_00034 - 0.011 15.5 0.9 0.13 11.9 0.3 2.7 2 1 0 2 2 1 0 IstB-like ATP binding protein T2SSE PF00437.20 CP023447_00034 - 0.011 14.8 0.0 0.02 14.0 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_5 PF07728.14 CP023447_00034 - 0.011 15.7 0.3 0.058 13.4 0.3 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 CP023447_00034 - 0.012 15.5 0.7 0.038 13.9 0.1 2.2 2 1 1 3 3 3 0 RsgA GTPase AAA_16 PF13191.6 CP023447_00034 - 0.021 15.2 0.0 0.056 13.8 0.0 1.7 2 0 0 2 2 1 0 AAA ATPase domain NB-ARC PF00931.22 CP023447_00034 - 0.021 14.0 0.0 0.052 12.7 0.0 1.7 1 1 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.6 CP023447_00034 - 0.026 15.0 13.2 0.42 11.1 0.3 2.6 2 1 0 2 2 2 0 AAA domain ParA PF10609.9 CP023447_00034 - 0.038 13.4 0.1 0.16 11.4 0.0 2.0 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase PhoH PF02562.16 CP023447_00034 - 0.045 13.2 0.0 0.097 12.1 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein Roc PF08477.13 CP023447_00034 - 0.045 14.0 0.6 1 9.6 0.0 2.7 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_14 PF13173.6 CP023447_00034 - 0.047 13.7 0.2 0.047 13.7 0.2 2.6 2 1 0 2 2 2 0 AAA domain VirE PF05272.11 CP023447_00034 - 0.049 13.4 0.1 0.22 11.2 0.0 2.2 3 0 0 3 3 2 0 Virulence-associated protein E NACHT PF05729.12 CP023447_00034 - 0.056 13.4 0.1 0.13 12.2 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 CP023447_00034 - 0.061 13.8 0.5 0.16 12.4 0.5 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 CP023447_00034 - 0.062 13.0 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 CP023447_00034 - 0.08 13.3 0.2 0.23 11.8 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 CP023447_00034 - 0.097 13.2 0.1 0.38 11.3 0.1 2.1 1 1 0 1 1 1 0 AAA domain HPPK PF01288.20 CP023447_00035 - 2e-20 73.4 0.0 2.3e-20 73.2 0.0 1.1 1 0 0 1 1 1 1 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DHquinase_II PF01220.19 CP023447_00036 - 1e-57 193.7 0.3 1.2e-57 193.4 0.3 1.1 1 0 0 1 1 1 1 Dehydroquinase class II Enoyl_reductase PF12241.8 CP023447_00036 - 0.016 14.5 0.0 0.022 14.1 0.0 1.2 1 0 0 1 1 1 0 Trans-2-enoyl-CoA reductase catalytic region PCuAC PF04314.13 CP023447_00036 - 0.035 13.9 0.1 2.5 7.9 0.0 2.2 2 0 0 2 2 2 0 Copper chaperone PCu(A)C Amidohydro_1 PF01979.20 CP023447_00037 - 5.3e-61 206.8 0.0 6.2e-61 206.6 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 CP023447_00037 - 1.3e-07 31.5 0.0 0.016 14.7 0.0 3.3 2 2 0 3 3 3 3 Amidohydrolase family Peptidase_S49 PF01343.18 CP023447_00038 - 6.8e-53 178.8 0.2 8.7e-53 178.4 0.2 1.1 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 CP023447_00038 - 5.5e-06 26.4 0.3 7e-05 22.8 0.3 2.2 1 1 0 1 1 1 1 Clp protease SDH_sah PF01972.16 CP023447_00038 - 0.00055 19.0 0.3 0.0009 18.3 0.1 1.5 1 1 0 1 1 1 1 Serine dehydrogenase proteinase GSH-S_ATP PF02955.16 CP023447_00039 - 0.056 12.8 0.0 0.24 10.8 0.0 1.8 2 0 0 2 2 2 0 Prokaryotic glutathione synthetase, ATP-grasp domain DUF4821 PF16092.5 CP023447_00039 - 0.084 12.5 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4821) Zn_ribbon_SprT PF17283.2 CP023447_00040 - 0.0036 17.2 1.1 0.0064 16.4 1.1 1.4 1 0 0 1 1 1 1 SprT-like zinc ribbon domain Hemerythrin PF01814.23 CP023447_00041 - 4.9e-06 27.2 1.4 6.3e-06 26.8 1.4 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain LANC_like PF05147.13 CP023447_00041 - 0.022 13.3 0.1 0.028 13.0 0.1 1.1 1 0 0 1 1 1 0 Lanthionine synthetase C-like protein RHH_7 PF16777.5 CP023447_00041 - 0.046 14.1 0.1 0.085 13.3 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator, RHH-like, CopG LUD_dom PF02589.15 CP023447_00042 - 1.3e-29 103.3 0.2 1.7e-29 102.9 0.2 1.2 1 0 0 1 1 1 1 LUD domain AAA_5 PF07728.14 CP023447_00042 - 0.068 13.2 0.1 0.19 11.7 0.1 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) LUD_dom PF02589.15 CP023447_00043 - 7.8e-52 175.8 0.2 1.3e-51 175.1 0.0 1.4 2 0 0 2 2 2 1 LUD domain DUF3390 PF11870.8 CP023447_00043 - 9.3e-17 61.2 0.0 1.9e-16 60.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3390) Fer4_8 PF13183.6 CP023447_00043 - 1.1e-11 44.9 1.5 3.1e-11 43.6 1.5 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 CP023447_00043 - 4.6e-09 36.7 2.0 1.1e-08 35.5 2.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 CP023447_00043 - 1e-08 35.1 8.1 4.4e-08 33.1 7.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 CP023447_00043 - 1.8e-08 33.9 11.7 0.00027 20.6 2.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 CP023447_00043 - 5.7e-08 33.2 4.6 1.4e-07 32.0 4.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 CP023447_00043 - 1e-06 28.5 11.3 0.00029 20.8 1.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 CP023447_00043 - 4.8e-06 26.6 5.7 6e-05 23.1 6.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 CP023447_00043 - 1.8e-05 24.6 11.2 0.018 15.1 1.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 CP023447_00043 - 4.7e-05 23.4 4.6 0.051 13.7 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 CP023447_00043 - 0.00016 21.4 2.9 0.06 13.1 0.1 2.5 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.7 CP023447_00043 - 0.00031 21.0 11.3 0.00053 20.3 1.3 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.6 CP023447_00043 - 0.0012 19.7 11.6 0.05 14.5 11.9 2.7 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 CP023447_00043 - 0.0022 18.8 5.7 1.1 10.1 1.0 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 CP023447_00043 - 0.0029 18.4 16.2 0.23 12.5 3.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 CP023447_00043 - 0.026 14.7 5.7 2 8.6 0.1 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Ribosomal_L5_C PF00673.21 CP023447_00043 - 0.043 14.0 0.0 0.096 12.9 0.0 1.6 1 0 0 1 1 1 0 ribosomal L5P family C-terminus CCG PF02754.16 CP023447_00044 - 8.5e-31 106.0 0.4 2.7e-16 59.5 0.1 2.1 2 0 0 2 2 2 2 Cysteine-rich domain HTH_11 PF08279.12 CP023447_00044 - 0.029 14.3 0.1 7.3 6.6 0.0 2.7 2 0 0 2 2 2 0 HTH domain Lactate_perm PF02652.14 CP023447_00045 - 1.2e-205 684.2 48.6 1.4e-205 683.9 48.6 1.0 1 0 0 1 1 1 1 L-lactate permease CDtoxinA PF03498.14 CP023447_00046 - 1.1e-49 167.9 0.0 1.2e-49 167.7 0.0 1.0 1 0 0 1 1 1 1 Cytolethal distending toxin A/C domain DUF2141 PF09912.9 CP023447_00046 - 0.069 13.1 0.0 0.092 12.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2141) Exo_endo_phos PF03372.23 CP023447_00047 - 3.4e-18 66.0 0.2 4.9e-18 65.5 0.2 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family CDtoxinA PF03498.14 CP023447_00048 - 1e-45 155.0 0.1 1.4e-45 154.5 0.1 1.2 1 0 0 1 1 1 1 Cytolethal distending toxin A/C domain RicinB_lectin_2 PF14200.6 CP023447_00048 - 1.4e-06 28.9 0.5 3.7e-06 27.6 0.1 1.9 2 0 0 2 2 2 1 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.22 CP023447_00048 - 1.6e-05 25.1 0.4 6.9e-05 23.1 0.4 1.7 1 1 0 1 1 1 1 Ricin-type beta-trefoil lectin domain DUF4492 PF14899.6 CP023447_00049 - 1.7e-25 88.7 8.4 1.7e-25 88.7 8.4 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4492) Cyt_bd_oxida_I PF01654.17 CP023447_00050 - 1.6e-171 570.5 23.0 2.1e-171 570.2 23.0 1.1 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I Cyt_bd_oxida_II PF02322.15 CP023447_00051 - 4.4e-74 249.6 31.0 5e-74 249.4 31.0 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II TrbL PF04610.14 CP023447_00051 - 0.002 17.9 11.8 0.002 17.9 11.8 3.9 2 2 2 4 4 4 1 TrbL/VirB6 plasmid conjugal transfer protein DUF334 PF03904.13 CP023447_00051 - 0.055 13.0 0.9 0.17 11.4 0.9 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF334) Asp_Glu_race PF01177.22 CP023447_00053 - 2e-56 191.4 2.4 2.3e-56 191.2 2.4 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Pantoate_transf PF02548.15 CP023447_00053 - 0.00035 20.0 0.4 0.0032 16.9 0.1 2.1 2 0 0 2 2 2 1 Ketopantoate hydroxymethyltransferase PA PF02225.22 CP023447_00053 - 0.022 14.7 0.0 6.6 6.8 0.0 2.3 2 0 0 2 2 2 0 PA domain AAA_33 PF13671.6 CP023447_00053 - 0.083 13.1 0.1 0.14 12.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain UDG PF03167.19 CP023447_00054 - 1.1e-20 74.2 0.1 1.5e-20 73.7 0.1 1.2 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Lyase_1 PF00206.20 CP023447_00055 - 8.3e-102 340.8 0.0 1e-101 340.5 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 CP023447_00055 - 4.3e-24 84.7 0.1 1.3e-23 83.1 0.1 1.9 1 0 0 1 1 1 1 Fumarase C C-terminus SH3_17 PF18350.1 CP023447_00055 - 0.088 12.7 0.0 0.28 11.1 0.0 1.9 1 0 0 1 1 1 0 Restriction endonuclease SH3 domain DcuA_DcuB PF03605.14 CP023447_00056 - 3.1e-134 447.5 28.5 3.9e-134 447.2 28.5 1.1 1 0 0 1 1 1 1 Anaerobic c4-dicarboxylate membrane transporter TPR_2 PF07719.17 CP023447_00057 - 0.0002 21.2 7.6 0.21 11.8 0.3 4.3 3 1 1 4 4 4 2 Tetratricopeptide repeat HZS_alpha PF18582.1 CP023447_00057 - 0.0024 18.3 0.0 0.016 15.7 0.0 2.2 2 0 0 2 2 2 1 Hydrazine synthase alpha subunit middle domain DUF1425 PF07233.12 CP023447_00058 - 7.2e-08 32.2 0.0 8.8e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1425) LpoB PF13036.6 CP023447_00059 - 6.4e-45 152.7 0.1 8e-45 152.4 0.1 1.1 1 0 0 1 1 1 1 Peptidoglycan-synthase activator LpoB CTP_synth_N PF06418.14 CP023447_00060 - 0.0094 15.3 1.9 0.4 10.0 0.3 2.3 2 0 0 2 2 2 2 CTP synthase N-terminus CsgG PF03783.14 CP023447_00061 - 1.9e-06 27.3 3.0 2.2e-06 27.1 1.0 2.0 2 0 0 2 2 2 1 Curli production assembly/transport component CsgG LPP20 PF02169.16 CP023447_00061 - 0.0011 19.3 6.6 0.0011 19.3 6.6 2.7 2 0 0 2 2 2 1 LPP20 lipoprotein AAA_assoc_2 PF16193.5 CP023447_00061 - 0.0058 16.9 0.2 0.26 11.6 0.1 2.7 2 0 0 2 2 2 1 AAA C-terminal domain Ribosomal_L21p PF00829.21 CP023447_00062 - 1.1e-31 109.0 5.4 1.2e-31 108.9 5.4 1.0 1 0 0 1 1 1 1 Ribosomal prokaryotic L21 protein DUF5599 PF18141.1 CP023447_00062 - 0.028 14.6 0.1 0.043 14.1 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF5599) Ribosomal_L27 PF01016.19 CP023447_00063 - 3.7e-38 129.4 5.0 4.1e-38 129.3 5.0 1.0 1 0 0 1 1 1 1 Ribosomal L27 protein GTP1_OBG PF01018.22 CP023447_00064 - 1.1e-54 184.2 7.9 1.5e-54 183.8 7.9 1.1 1 0 0 1 1 1 1 GTP1/OBG MMR_HSR1 PF01926.23 CP023447_00064 - 1.3e-21 76.8 0.0 2.1e-21 76.2 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 CP023447_00064 - 2.5e-09 36.9 0.0 5.1e-09 35.8 0.0 1.5 2 0 0 2 2 2 1 Ferrous iron transport protein B MeaB PF03308.16 CP023447_00064 - 0.049 12.6 0.0 0.3 10.0 0.0 2.0 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AA_kinase PF00696.28 CP023447_00065 - 5.3e-37 127.7 0.6 6.1e-37 127.5 0.6 1.0 1 0 0 1 1 1 1 Amino acid kinase family Formyl_trans_N PF00551.19 CP023447_00066 - 3e-35 121.6 0.0 4.7e-35 121.0 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase Formyl_trans_C PF02911.18 CP023447_00066 - 5.1e-20 71.6 0.0 9.1e-20 70.8 0.0 1.4 1 0 0 1 1 1 1 Formyl transferase, C-terminal domain BPL_LplA_LipB PF03099.19 CP023447_00067 - 3.8e-13 49.5 0.0 5.1e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Ubiquitin_4 PF18036.1 CP023447_00067 - 0.034 14.2 0.0 0.072 13.1 0.0 1.5 1 0 0 1 1 1 0 Ubiquitin-like domain AAA_31 PF13614.6 CP023447_00068 - 1.3e-65 220.7 3.2 1.3e-65 220.7 3.2 1.5 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 CP023447_00068 - 3.7e-26 91.7 0.2 5.2e-26 91.2 0.2 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 CP023447_00068 - 2.2e-14 53.4 0.9 3.6e-13 49.4 0.5 2.3 1 1 0 1 1 1 1 ATPase MipZ ParA PF10609.9 CP023447_00068 - 1.6e-12 47.5 0.2 2e-08 34.0 0.0 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 CP023447_00068 - 2e-10 40.6 0.0 3.4e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 CP023447_00068 - 3.8e-09 36.4 0.5 2.8e-07 30.2 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 CP023447_00068 - 3.8e-08 32.9 0.3 1.2e-06 27.9 0.0 2.3 2 1 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 CP023447_00068 - 6.2e-05 22.4 0.2 0.00018 20.9 0.1 1.7 1 1 0 1 1 1 1 VirC1 protein SRP54 PF00448.22 CP023447_00068 - 0.0032 17.1 1.2 0.018 14.7 0.2 2.1 1 1 1 2 2 2 1 SRP54-type protein, GTPase domain DUF1027 PF06265.11 CP023447_00068 - 0.028 14.4 0.1 2.7 8.0 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1027) DUF1906 PF08924.11 CP023447_00068 - 0.051 13.7 0.0 1.5 9.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1906) AAA_24 PF13479.6 CP023447_00068 - 0.063 13.0 0.1 0.13 12.0 0.1 1.5 1 1 0 1 1 1 0 AAA domain CLP1_P PF16575.5 CP023447_00068 - 0.069 12.9 0.1 0.17 11.6 0.0 1.7 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 CP023447_00068 - 0.088 12.4 0.1 0.39 10.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 CP023447_00068 - 0.088 11.8 0.1 0.14 11.1 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ParBc PF02195.18 CP023447_00069 - 5.4e-26 90.7 0.6 3.6e-25 88.1 0.1 2.4 2 0 0 2 2 2 1 ParB-like nuclease domain HTH_ParB PF17762.1 CP023447_00069 - 1.1e-14 54.0 0.6 1.1e-14 54.0 0.6 2.9 3 0 0 3 3 3 1 HTH domain found in ParB protein ATP-synt_B PF00430.18 CP023447_00070 - 2.3e-10 40.7 10.5 3.1e-10 40.3 10.5 1.2 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) PMT2_N PF17987.1 CP023447_00070 - 0.034 14.3 0.7 0.046 13.9 0.7 1.3 1 0 0 1 1 1 0 Phosphoethanolamine N-methyltransferase 2 N-terminal DUF948 PF06103.11 CP023447_00070 - 0.041 14.1 1.5 0.095 13.0 0.8 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) PAGK PF15284.6 CP023447_00070 - 0.053 13.4 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Phage-encoded virulence factor DUF5119 PF17145.4 CP023447_00070 - 0.067 13.1 0.1 0.08 12.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5119) ATP-synt_B PF00430.18 CP023447_00071 - 0.008 16.3 0.2 0.008 16.3 0.2 1.3 2 0 0 2 2 2 1 ATP synthase B/B' CF(0) V-ATPase_G_2 PF16999.5 CP023447_00072 - 0.00022 21.6 2.8 0.00022 21.6 2.8 1.2 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit Plasmid_parti PF01672.16 CP023447_00072 - 0.0019 18.8 0.8 0.0027 18.3 0.8 1.3 1 0 0 1 1 1 1 Putative plasmid partition protein ATP-synt_B PF00430.18 CP023447_00072 - 0.0036 17.4 3.6 0.0042 17.2 3.6 1.2 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) DUF4954 PF16314.5 CP023447_00072 - 0.011 14.0 1.3 0.011 13.9 1.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) OSCP PF00213.18 CP023447_00073 - 3.3e-22 79.4 3.0 4.5e-22 79.0 3.0 1.2 1 0 0 1 1 1 1 ATP synthase delta (OSCP) subunit ATP-synt_ab PF00006.25 CP023447_00074 - 1.4e-76 256.9 0.1 2.1e-76 256.3 0.1 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.27 CP023447_00074 - 6.3e-51 172.0 0.6 1e-50 171.2 0.6 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.23 CP023447_00074 - 3e-17 62.9 1.7 9.3e-17 61.3 1.7 1.9 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain ATPase PF06745.13 CP023447_00074 - 2.2e-05 23.9 1.4 0.00013 21.4 0.3 2.6 2 0 0 2 2 2 1 KaiC Arginosuc_synth PF00764.19 CP023447_00074 - 0.046 13.0 0.2 0.082 12.2 0.2 1.3 1 0 0 1 1 1 0 Arginosuccinate synthase HAS-barrel PF09378.10 CP023447_00074 - 0.061 13.5 0.1 0.25 11.5 0.1 2.1 2 1 0 2 2 2 0 HAS barrel domain Fe_dep_repress PF01325.19 CP023447_00074 - 0.074 13.3 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain ATP-synt PF00231.19 CP023447_00075 - 4.2e-83 279.3 12.2 4.7e-83 279.1 12.2 1.0 1 0 0 1 1 1 1 ATP synthase ATP-synt_ab PF00006.25 CP023447_00076 - 6.6e-65 218.7 0.0 9.7e-65 218.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 CP023447_00076 - 1.2e-18 67.3 0.1 3.4e-18 65.9 0.1 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain T3SS_ATPase_C PF18269.1 CP023447_00076 - 0.014 15.2 0.8 0.26 11.2 0.2 2.9 2 1 0 2 2 2 0 T3SS EscN ATPase C-terminal domain RsgA_GTPase PF03193.16 CP023447_00076 - 0.047 13.6 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase ATP-synt_DE_N PF02823.16 CP023447_00077 - 2.7e-24 84.9 0.2 3.3e-24 84.6 0.2 1.1 1 0 0 1 1 1 1 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MotA_ExbB PF01618.16 CP023447_00078 - 3.1e-25 88.4 0.1 4e-25 88.0 0.1 1.2 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family ExbD PF02472.16 CP023447_00079 - 2.8e-28 98.7 2.3 3.2e-28 98.5 2.3 1.0 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR TonB_2 PF13103.6 CP023447_00080 - 1.5e-12 47.6 0.1 2.7e-12 46.7 0.1 1.4 1 0 0 1 1 1 1 TonB C terminal SHE3 PF17078.5 CP023447_00080 - 0.0069 16.1 2.0 0.011 15.5 2.0 1.4 1 0 0 1 1 1 1 SWI5-dependent HO expression protein 3 Pectate_lyase22 PF14583.6 CP023447_00081 - 1.9e-08 33.4 2.3 3.5e-07 29.2 0.3 2.7 1 1 2 3 3 3 1 Oligogalacturonate lyase PD40 PF07676.12 CP023447_00081 - 2.7e-06 27.1 1.2 0.3 11.1 0.2 3.8 3 1 0 3 3 3 2 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 CP023447_00081 - 0.00048 19.0 1.1 0.96 8.1 0.1 2.9 1 1 2 3 3 3 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region TolB_N PF04052.13 CP023447_00081 - 0.014 15.5 0.1 0.05 13.8 0.1 1.9 2 0 0 2 2 2 0 TolB amino-terminal domain MNE1 PF13762.6 CP023447_00081 - 0.017 15.1 0.6 0.15 12.0 0.3 2.3 2 0 0 2 2 2 0 Mitochondrial splicing apparatus component OmpA PF00691.20 CP023447_00082 - 7.2e-21 74.4 0.0 1.1e-20 73.8 0.0 1.3 1 0 0 1 1 1 1 OmpA family ApbE PF02424.15 CP023447_00082 - 0.028 14.0 0.0 0.036 13.6 0.0 1.1 1 0 0 1 1 1 0 ApbE family Pilus_CpaD PF09476.10 CP023447_00082 - 0.051 13.3 0.3 1.8 8.2 0.0 2.1 2 0 0 2 2 2 0 Pilus biogenesis CpaD protein (pilus_cpaD) TPR_6 PF13174.6 CP023447_00083 - 5.6e-07 29.8 0.1 0.0029 18.1 0.0 2.8 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.17 CP023447_00083 - 1.5e-05 24.8 0.1 0.00062 19.7 0.1 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 CP023447_00083 - 0.00032 20.7 0.5 0.0013 18.8 0.5 2.1 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_1 PF00515.28 CP023447_00083 - 0.00034 20.3 0.7 0.0013 18.4 0.6 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.6 CP023447_00083 - 0.0017 19.0 0.0 0.044 14.4 0.0 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat Jnk-SapK_ap_N PF09744.9 CP023447_00083 - 0.0051 17.0 9.1 0.0051 17.0 9.1 2.2 1 1 2 3 3 3 1 JNK_SAPK-associated protein-1 BLOC1_2 PF10046.9 CP023447_00083 - 0.0088 16.3 8.4 0.0088 16.3 8.4 2.7 1 1 2 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 CorA PF01544.18 CP023447_00083 - 0.043 13.1 3.5 0.074 12.4 3.5 1.4 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein TPR_19 PF14559.6 CP023447_00083 - 0.043 14.3 0.1 0.22 12.1 0.0 2.3 3 0 0 3 3 2 0 Tetratricopeptide repeat ANAPC3 PF12895.7 CP023447_00083 - 0.067 13.4 0.4 0.21 11.8 0.3 1.9 1 1 1 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 CP023447_00083 - 0.071 13.4 0.0 0.17 12.2 0.0 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat DUF1664 PF07889.12 CP023447_00083 - 0.08 13.0 11.4 0.21 11.7 2.1 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) FKBP_C PF00254.28 CP023447_00084 - 2.6e-06 27.7 0.1 5.3e-06 26.7 0.1 1.5 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Acyl_transf_1 PF00698.21 CP023447_00085 - 6.3e-21 75.2 0.0 7.5e-21 75.0 0.0 1.0 1 0 0 1 1 1 1 Acyl transferase domain SAT PF16073.5 CP023447_00085 - 0.032 14.0 0.0 0.096 12.4 0.0 1.7 1 1 0 1 1 1 0 Starter unit:ACP transacylase in aflatoxin biosynthesis PNP_UDP_1 PF01048.20 CP023447_00086 - 4.3e-43 147.2 0.0 5e-43 147.0 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily ATP_bind_3 PF01171.20 CP023447_00087 - 5.8e-22 78.3 0.0 8.3e-22 77.8 0.0 1.2 1 0 0 1 1 1 1 PP-loop family NAD_synthase PF02540.17 CP023447_00087 - 0.0011 18.1 0.0 0.0015 17.7 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 CP023447_00087 - 0.029 14.0 0.1 0.041 13.6 0.1 1.3 1 0 0 1 1 1 0 Asparagine synthase Isochorismatase PF00857.20 CP023447_00088 - 9.1e-14 52.0 0.0 1e-13 51.9 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family RecO_N_2 PF13114.6 CP023447_00089 - 2e-32 110.7 0.1 5.6e-32 109.3 0.0 1.8 2 0 0 2 2 2 1 RecO N terminal Mad3_BUB1_I PF08311.12 CP023447_00089 - 0.021 14.8 0.1 0.036 14.0 0.1 1.4 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 RecO_N PF11967.8 CP023447_00089 - 0.022 14.7 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 Recombination protein O N terminal UPF0054 PF02130.17 CP023447_00090 - 2.7e-34 117.8 1.0 3.1e-34 117.5 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein family UPF0054 PIG-S PF10510.9 CP023447_00090 - 0.036 12.9 0.0 0.036 12.9 0.0 1.2 1 0 0 1 1 1 0 Phosphatidylinositol-glycan biosynthesis class S protein DUF573 PF04504.14 CP023447_00091 - 0.021 15.5 8.4 0.051 14.2 4.7 2.9 1 1 1 3 3 3 0 Protein of unknown function, DUF573 Dus PF01207.17 CP023447_00092 - 6.2e-76 255.5 0.0 7.6e-76 255.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) TIM PF00121.18 CP023447_00092 - 0.00027 20.4 0.1 0.00047 19.6 0.1 1.4 1 0 0 1 1 1 1 Triosephosphate isomerase TMP-TENI PF02581.17 CP023447_00092 - 0.0067 15.8 0.1 0.014 14.7 0.1 1.6 1 1 0 1 1 1 1 Thiamine monophosphate synthase PdxJ PF03740.13 CP023447_00092 - 0.0093 15.1 0.4 0.52 9.4 0.0 2.5 2 1 1 3 3 3 1 Pyridoxal phosphate biosynthesis protein PdxJ BtpA PF03437.15 CP023447_00092 - 0.056 12.9 0.0 0.091 12.2 0.0 1.3 1 0 0 1 1 1 0 BtpA family DUF910 PF06014.11 CP023447_00093 - 0.0037 17.3 2.3 1.9 8.5 0.1 2.8 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF910) Utp13 PF08625.11 CP023447_00093 - 0.012 15.6 4.3 0.016 15.1 0.4 2.3 2 0 0 2 2 2 0 Utp13 specific WD40 associated domain DUF325 PF03804.13 CP023447_00093 - 0.076 13.0 0.1 0.21 11.6 0.1 1.7 1 0 0 1 1 1 0 Viral proteins of unknown function zf-dskA_traR PF01258.17 CP023447_00094 - 1.3e-11 44.2 2.3 2.1e-11 43.6 2.3 1.3 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger SPOUT_MTase PF02590.17 CP023447_00095 - 7.4e-40 136.4 0.5 8.3e-40 136.3 0.5 1.0 1 0 0 1 1 1 1 Predicted SPOUT methyltransferase BBP1_C PF15272.6 CP023447_00095 - 0.001 19.0 1.1 0.0016 18.3 1.1 1.3 1 0 0 1 1 1 1 Spindle pole body component BBP1, C-terminal Carboxyl_trans PF01039.22 CP023447_00096 - 1.4e-21 76.8 0.2 3.2e-21 75.5 0.2 1.5 1 1 0 1 1 1 1 Carboxyl transferase domain zf-ACC PF17848.1 CP023447_00096 - 1.1e-07 31.7 9.0 1.9e-07 31.0 9.0 1.4 1 0 0 1 1 1 1 Acetyl-coA carboxylase zinc finger domain RNA_POL_M_15KD PF02150.16 CP023447_00096 - 0.071 13.0 1.7 0.45 10.4 1.8 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Inositol_P PF00459.25 CP023447_00097 - 1.3e-14 54.4 0.0 1.9e-14 53.9 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 CP023447_00097 - 0.015 14.8 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase, N-terminal domain Bac_surface_Ag PF01103.23 CP023447_00098 - 4.4e-68 230.2 10.5 7.3e-68 229.4 10.5 1.4 1 0 0 1 1 1 1 Surface antigen POTRA PF07244.15 CP023447_00098 - 2e-39 134.0 36.8 8e-13 48.8 3.4 5.7 6 0 0 6 6 6 5 Surface antigen variable number repeat POTRA_2 PF08479.11 CP023447_00098 - 9e-06 25.4 2.6 0.61 10.0 0.1 5.3 5 0 0 5 5 5 2 POTRA domain, ShlB-type POTRA_1 PF08478.10 CP023447_00098 - 3.7e-05 23.9 4.5 0.59 10.5 0.1 4.4 4 0 0 4 4 4 2 POTRA domain, FtsQ-type ShlB PF03865.13 CP023447_00098 - 0.00035 20.1 1.4 0.00057 19.4 0.2 1.9 2 0 0 2 2 2 1 Haemolysin secretion/activation protein ShlB/FhaC/HecB PDH PF02153.17 CP023447_00099 - 2.6e-69 233.1 0.2 2.9e-69 233.0 0.2 1.0 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 CP023447_00099 - 0.00016 22.2 0.2 0.00063 20.3 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 CP023447_00099 - 0.00044 20.5 0.0 0.00076 19.7 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IPT PF01745.16 CP023447_00099 - 0.03 13.7 0.2 0.05 13.0 0.2 1.3 1 0 0 1 1 1 0 Isopentenyl transferase FNIP PF05725.12 CP023447_00099 - 0.048 13.8 0.6 0.11 12.6 0.6 1.6 1 0 0 1 1 1 0 FNIP Repeat IlvN PF07991.12 CP023447_00099 - 0.072 12.7 0.0 0.36 10.4 0.0 1.9 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Peptidase_M23 PF01551.22 CP023447_00100 - 1.3e-17 63.7 2.8 1.7e-17 63.4 0.3 2.3 3 0 0 3 3 3 1 Peptidase family M23 Sigma_reg_N PF13800.6 CP023447_00100 - 0.089 13.1 0.9 0.78 10.1 0.7 2.3 2 0 0 2 2 2 0 Sigma factor regulator N-terminal LpxC PF03331.13 CP023447_00101 - 2.8e-101 338.6 0.0 3.2e-101 338.4 0.0 1.0 1 0 0 1 1 1 1 UDP-3-O-acyl N-acetylglycosamine deacetylase Peptidase_M22 PF00814.25 CP023447_00102 - 0.00024 20.9 0.0 0.0003 20.6 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family GHMP_kinases_N PF00288.26 CP023447_00103 - 7.8e-10 38.9 0.0 2.6e-09 37.2 0.0 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 CP023447_00103 - 0.00048 20.4 0.0 0.0018 18.6 0.0 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal zf-FPG_IleRS PF06827.14 CP023447_00104 - 0.045 13.6 0.1 0.079 12.8 0.1 1.4 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS IF-2 PF11987.8 CP023447_00105 - 3.2e-37 126.8 1.1 3.2e-37 126.8 1.1 2.6 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU PF00009.27 CP023447_00105 - 1.7e-33 115.8 2.5 1.7e-33 115.8 2.5 2.9 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF2_N PF04760.15 CP023447_00105 - 6.6e-32 109.1 6.2 3.2e-15 55.7 0.3 3.4 3 0 0 3 3 3 2 Translation initiation factor IF-2, N-terminal region MMR_HSR1 PF01926.23 CP023447_00105 - 1.6e-11 44.3 0.2 1.6e-11 44.3 0.2 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 CP023447_00105 - 1.2e-09 38.4 10.1 1.7e-06 28.3 1.4 3.5 2 0 0 2 2 2 2 Elongation factor Tu domain 2 Ras PF00071.22 CP023447_00105 - 1.5e-06 27.9 0.0 1.5e-06 27.9 0.0 2.5 3 0 0 3 3 3 1 Ras family Arf PF00025.21 CP023447_00105 - 4.8e-06 26.1 1.7 1.8e-05 24.3 0.0 2.5 3 0 0 3 3 3 1 ADP-ribosylation factor family FeoB_N PF02421.18 CP023447_00105 - 0.00017 21.2 0.2 0.00096 18.7 0.2 2.2 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 CP023447_00105 - 0.00028 20.9 7.5 0.0023 17.8 0.0 3.6 3 1 1 4 4 4 2 RsgA GTPase Roc PF08477.13 CP023447_00105 - 0.0016 18.6 0.0 0.0044 17.2 0.0 1.8 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1_Xtn PF16897.5 CP023447_00105 - 0.056 13.5 1.6 0.87 9.6 0.0 3.4 3 0 0 3 3 3 0 C-terminal region of MMR_HSR1 domain RBFA PF02033.18 CP023447_00106 - 1.7e-13 50.9 0.0 1.9e-13 50.7 0.0 1.0 1 0 0 1 1 1 1 Ribosome-binding factor A CAAP1 PF15335.6 CP023447_00106 - 0.027 15.0 0.5 0.13 12.9 0.3 2.2 1 1 1 2 2 2 0 Caspase activity and apoptosis inhibitor 1 PRANC PF09372.10 CP023447_00106 - 0.079 13.3 0.5 0.89 9.9 0.0 2.2 1 1 0 2 2 2 0 PRANC domain DUF150 PF02576.17 CP023447_00107 - 3.4e-25 88.2 0.4 1.7e-24 86.0 0.1 1.9 2 0 0 2 2 2 1 RimP N-terminal domain DUF150_C PF17384.2 CP023447_00107 - 2.4e-18 66.0 2.9 3.5e-18 65.5 2.9 1.3 1 0 0 1 1 1 1 RimP C-terminal SH3 domain LolA_like PF17131.4 CP023447_00107 - 0.02 14.6 0.6 0.034 13.9 0.6 1.2 1 0 0 1 1 1 0 Outer membrane lipoprotein-sorting protein LSM14 PF12701.7 CP023447_00107 - 0.036 14.2 0.1 0.058 13.5 0.1 1.4 1 0 0 1 1 1 0 Scd6-like Sm domain AAA_5 PF07728.14 CP023447_00108 - 3.8e-12 46.4 0.0 5.9e-10 39.3 0.0 2.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 CP023447_00108 - 3e-05 24.4 0.0 0.11 13.0 0.1 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 CP023447_00108 - 0.049 14.0 0.1 0.71 10.2 0.1 2.5 1 1 0 1 1 1 0 AAA domain CHASE5 PF17149.4 CP023447_00108 - 0.076 12.9 0.7 1.9 8.4 0.1 2.9 2 0 0 2 2 2 0 Periplasmic sensor domain found in signal transduction proteins McrBC PF10117.9 CP023447_00109 - 1.9e-108 362.4 13.0 2.4e-108 362.1 13.0 1.1 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component ABC-3 PF00950.17 CP023447_00110 - 6.2e-72 242.2 35.7 7e-72 242.0 35.7 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 CP023447_00110 - 4.2e-10 39.1 35.4 7.4e-10 38.3 35.4 1.4 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 CP023447_00111 - 1.3e-28 100.2 0.1 3.5e-28 98.8 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 CP023447_00111 - 3.4e-09 37.0 0.7 0.00028 20.8 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 CP023447_00111 - 4.9e-07 29.4 1.0 0.002 17.6 0.0 2.4 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 CP023447_00111 - 0.00018 21.2 0.0 0.00034 20.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 CP023447_00111 - 0.00034 20.9 0.1 0.0014 18.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 CP023447_00111 - 0.00057 19.9 1.5 0.0057 16.6 1.5 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_15 PF13175.6 CP023447_00111 - 0.0027 17.5 14.7 0.0081 15.9 14.7 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 CP023447_00111 - 0.0049 16.5 0.0 0.0098 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 CP023447_00111 - 0.0056 16.9 0.1 0.13 12.6 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 CP023447_00111 - 0.011 15.5 0.0 0.099 12.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 CP023447_00111 - 0.013 16.0 6.6 0.076 13.5 6.6 2.3 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 CP023447_00111 - 0.027 14.4 0.0 0.07 13.0 0.0 1.7 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 CP023447_00111 - 0.027 14.8 0.0 0.043 14.2 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 CP023447_00111 - 0.033 14.6 0.3 0.13 12.7 0.3 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 CP023447_00111 - 0.043 13.7 0.0 0.093 12.6 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_14 PF13173.6 CP023447_00111 - 0.044 13.8 0.2 0.2 11.7 0.1 2.4 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 CP023447_00111 - 0.062 13.0 0.0 11 5.7 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.12 CP023447_00111 - 0.084 12.8 0.1 0.28 11.1 0.0 1.9 2 0 0 2 2 2 0 NACHT domain ZnuA PF01297.17 CP023447_00112 - 1.5e-55 188.4 3.1 1.8e-55 188.1 3.1 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic Relaxase PF03432.14 KC907204_00001 - 2.1e-09 37.3 4.9 2.1e-09 37.3 4.9 2.9 2 1 1 3 3 3 1 Relaxase/Mobilisation nuclease domain B3 PF02362.21 KC907204_00001 - 0.00093 19.0 0.2 0.01 15.7 0.1 2.6 2 0 0 2 2 2 1 B3 DNA binding domain Ig_GlcNase PF18368.1 KC907204_00001 - 0.039 14.1 0.2 0.17 12.0 0.0 2.1 3 0 0 3 3 3 0 Exo-beta-D-glucosaminidase Ig-fold domain DUF2884 PF11101.8 KC907204_00001 - 0.045 13.3 0.1 0.11 12.0 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) APH PF01636.23 KX931103_00001 - 1.9e-24 86.9 0.0 2.6e-24 86.5 0.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 KX931103_00001 - 0.0013 18.3 1.5 0.0013 18.3 1.5 1.7 2 0 0 2 2 2 1 Choline/ethanolamine kinase APH PF01636.23 KX931104_00001 - 1.9e-24 86.9 0.0 2.6e-24 86.5 0.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 KX931104_00001 - 0.0013 18.3 1.5 0.0013 18.3 1.5 1.7 2 0 0 2 2 2 1 Choline/ethanolamine kinase Mur_ligase_M PF08245.12 NAAE01000001_00001 - 3.6e-20 72.8 0.8 1.9e-19 70.4 0.1 2.4 2 1 0 2 2 2 1 Mur ligase middle domain Mur_ligase_C PF02875.21 NAAE01000001_00001 - 0.0043 17.3 0.0 0.011 16.0 0.0 1.7 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain CTP_transf_3 PF02348.19 NAAE01000001_00003 - 9.6e-46 156.5 0.3 1.2e-45 156.1 0.3 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 NAAE01000001_00003 - 1.3e-05 25.6 0.0 1.6e-05 25.4 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain HTH_19 PF12844.7 NAAE01000001_00003 - 0.0091 16.0 2.0 0.047 13.7 0.4 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain PALP PF00291.25 NAAE01000001_00004 - 1.4e-09 37.8 0.0 2.3e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 NAAE01000001_00004 - 2.1e-07 31.1 0.3 1.2e-06 28.6 0.0 2.4 3 0 0 3 3 3 1 Threonine synthase N terminus CbiA PF01656.23 NAAE01000001_00004 - 0.039 14.0 0.0 0.59 10.2 0.0 2.6 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain LpxK PF02606.14 NAAE01000001_00005 - 1.6e-38 132.6 0.0 5.4e-28 98.0 0.0 2.0 1 1 1 2 2 2 2 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 NAAE01000001_00005 - 0.051 14.0 0.2 0.16 12.4 0.1 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NAD_synthase PF02540.17 NAAE01000001_00006 - 3.7e-79 265.2 0.1 4.2e-79 265.1 0.1 1.0 1 0 0 1 1 1 1 NAD synthase RPAP1_N PF08621.10 NAAE01000001_00006 - 6.6e-06 25.8 0.6 0.00013 21.7 0.7 2.3 2 0 0 2 2 2 1 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 NAAE01000001_00006 - 1.2e-05 24.3 0.0 0.00092 18.1 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 NAAE01000001_00006 - 0.00031 20.3 0.0 0.0011 18.5 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 NAAE01000001_00006 - 0.0013 18.5 0.0 0.002 17.8 0.0 1.4 1 1 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 NAAE01000001_00006 - 0.04 13.7 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 PP-loop family Lactamase_B PF00753.27 NAAE01000001_00007 - 1.7e-26 93.4 0.0 2.2e-26 93.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 NAAE01000001_00007 - 0.00014 21.5 0.2 0.00018 21.1 0.2 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain adh_short_C2 PF13561.6 NAAE01000001_00009 - 3.4e-59 200.2 1.1 4.2e-59 200.0 1.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 NAAE01000001_00009 - 1.6e-33 115.8 2.4 1.9e-33 115.6 2.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 NAAE01000001_00009 - 0.00012 22.1 0.1 0.00025 21.0 0.1 1.5 1 1 0 1 1 1 1 KR domain RRM_3 PF08777.11 NAAE01000001_00009 - 0.016 15.3 0.3 3.1 7.9 0.2 2.3 2 0 0 2 2 2 0 RNA binding motif DHDPS PF00701.22 NAAE01000001_00010 - 1.8e-88 296.0 0.2 2.3e-88 295.7 0.2 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family CTK3 PF12243.8 NAAE01000001_00010 - 0.068 13.2 0.0 0.32 11.0 0.0 2.0 2 0 0 2 2 2 0 CTD kinase subunit gamma CTK3 Peptidase_M16_C PF05193.21 NAAE01000001_00011 - 7.8e-31 107.5 1.1 1.1e-29 103.8 0.3 2.4 3 0 0 3 3 3 1 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 NAAE01000001_00011 - 8.6e-25 87.5 0.0 1.9e-24 86.3 0.0 1.5 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) LuxS PF02664.15 NAAE01000001_00011 - 0.022 14.4 0.0 5.3 6.7 0.0 2.4 2 0 0 2 2 2 0 S-Ribosylhomocysteinase (LuxS) DHO_dh PF01180.21 NAAE01000001_00012 - 2.7e-72 243.5 0.1 3.1e-72 243.3 0.1 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase ThiI PF02568.14 NAAE01000001_00012 - 0.031 13.9 0.0 0.086 12.4 0.0 1.7 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 NAAE01000001_00012 - 0.069 12.6 0.1 1.4 8.3 0.0 2.1 2 0 0 2 2 2 0 PcrB family ABC_membrane PF00664.23 NAAE01000001_00013 - 4.4e-48 164.3 8.4 5.8e-48 163.9 8.4 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 NAAE01000001_00013 - 4.9e-31 108.1 0.1 9e-31 107.2 0.1 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 NAAE01000001_00013 - 6e-10 38.9 5.9 1.4e-08 34.5 5.9 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 NAAE01000001_00013 - 0.00081 19.3 0.2 0.0019 18.1 0.1 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 NAAE01000001_00013 - 0.0025 18.1 0.4 0.027 14.7 0.4 2.4 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 NAAE01000001_00013 - 0.0056 16.9 0.2 0.046 14.0 0.2 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 NAAE01000001_00013 - 0.0098 15.6 0.1 0.04 13.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain ATP-synt_I PF03899.15 NAAE01000001_00013 - 0.024 15.0 0.3 0.024 15.0 0.3 3.4 3 0 0 3 3 3 0 ATP synthase I chain AAA_16 PF13191.6 NAAE01000001_00013 - 0.035 14.5 0.0 0.094 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 NAAE01000001_00013 - 0.094 12.5 0.7 0.19 11.5 0.1 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain tRNA-synt_1e PF01406.19 NAAE01000001_00014 - 1e-109 366.5 0.6 1.7e-109 365.8 0.6 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 NAAE01000001_00014 - 9e-14 51.0 1.5 3.4e-07 29.3 0.0 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (M) DALR_2 PF09190.11 NAAE01000001_00014 - 1.1e-07 32.2 4.6 7.2e-06 26.4 1.4 2.8 2 0 0 2 2 2 2 DALR domain tRNA-synt_1 PF00133.22 NAAE01000001_00014 - 1.6e-06 26.7 0.0 0.00047 18.5 0.0 2.6 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 NAAE01000001_00014 - 0.0002 20.4 0.2 0.02 13.8 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 NAAE01000001_00014 - 0.0023 18.0 0.0 0.0076 16.3 0.0 1.9 1 0 0 1 1 1 1 Sgs1 RecQ helicase DUF4919 PF16266.5 NAAE01000001_00014 - 0.013 15.4 0.0 0.033 14.1 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4919) MurJ PF03023.14 NAAE01000001_00015 - 1e-91 307.8 60.1 1.7e-91 307.1 60.1 1.3 1 1 0 1 1 1 1 Lipid II flippase MurJ FapA PF03961.13 NAAE01000001_00016 - 3.5e-30 105.0 37.0 5.2e-30 104.5 36.7 1.4 1 1 0 1 1 1 1 Flagellar Assembly Protein A FAM76 PF16046.5 NAAE01000001_00016 - 0.027 13.8 8.1 0.061 12.7 8.1 1.6 1 0 0 1 1 1 0 FAM76 protein HHH_5 PF14520.6 NAAE01000001_00017 - 2.8e-15 56.6 0.0 6.7e-15 55.4 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain RuvA_N PF01330.21 NAAE01000001_00017 - 4.3e-10 39.5 0.1 3.1e-09 36.8 0.1 2.1 2 0 0 2 2 2 1 RuvA N terminal domain RuvA_C PF07499.13 NAAE01000001_00017 - 2.2e-08 34.4 2.0 4.2e-08 33.5 2.0 1.5 1 0 0 1 1 1 1 RuvA, C-terminal domain HHH PF00633.23 NAAE01000001_00017 - 4.7e-07 29.4 0.1 0.0027 17.5 0.2 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 NAAE01000001_00017 - 5.6e-05 23.5 0.1 0.03 14.7 0.0 2.3 1 1 1 2 2 2 2 Ribosomal protein S13/S18 HHH_2 PF12826.7 NAAE01000001_00017 - 0.00086 19.4 0.0 1.8 8.7 0.0 2.6 1 1 1 2 2 2 2 Helix-hairpin-helix motif HHH_3 PF12836.7 NAAE01000001_00017 - 0.00095 19.4 0.0 0.033 14.5 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 NAAE01000001_00017 - 0.0011 19.5 0.7 0.0077 16.8 0.2 2.2 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 NAAE01000001_00017 - 0.0083 16.4 0.0 0.43 10.9 0.0 2.3 2 0 0 2 2 2 1 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 NAAE01000001_00017 - 0.019 15.3 0.1 0.19 12.1 0.1 2.6 2 1 0 2 2 2 0 IMS family HHH motif HHH_8 PF14716.6 NAAE01000001_00017 - 0.022 15.1 0.2 0.45 10.9 0.1 2.4 1 1 1 2 2 2 0 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 NAAE01000001_00017 - 0.032 14.1 0.0 8.3 6.3 0.0 2.3 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda Dala_Dala_lig_C PF07478.13 NAAE01000001_00018 - 2.6e-32 112.1 0.1 3.6e-32 111.6 0.1 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 NAAE01000001_00018 - 1.3e-20 73.8 0.0 1.1e-19 70.8 0.0 2.2 2 1 0 2 2 2 1 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 NAAE01000001_00018 - 1.2e-05 25.0 0.0 0.0089 15.6 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_4 PF13535.6 NAAE01000001_00018 - 0.00023 20.8 0.0 0.00062 19.4 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 NAAE01000001_00018 - 0.0015 18.6 0.1 0.11 12.5 0.1 2.9 1 1 1 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 NAAE01000001_00018 - 0.069 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain PhdYeFM_antitox PF02604.19 NAAE01000001_00019 - 1.2e-08 34.6 0.2 1.4e-08 34.4 0.2 1.2 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system Mur_ligase_M PF08245.12 NAAG01000003_00002 - 3.6e-20 72.8 0.8 1.9e-19 70.4 0.1 2.4 2 1 0 2 2 2 1 Mur ligase middle domain Mur_ligase_C PF02875.21 NAAG01000003_00002 - 0.0043 17.3 0.0 0.011 16.0 0.0 1.7 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain Abhydrolase_1 PF00561.20 NAAG01000003_00003 - 5.1e-09 36.2 0.0 3.3e-05 23.7 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 NAAG01000003_00003 - 6.4e-07 30.2 0.0 2.4e-06 28.3 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 NAAG01000003_00003 - 2.5e-05 23.7 0.0 3.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 FSH1 PF03959.13 NAAG01000003_00003 - 0.0031 17.2 0.1 0.26 10.9 0.0 2.5 2 1 0 2 2 2 1 Serine hydrolase (FSH1) Lipase_3 PF01764.25 NAAG01000003_00003 - 0.018 14.9 0.0 0.051 13.5 0.0 1.7 2 0 0 2 2 2 0 Lipase (class 3) Abhydrolase_4 PF08386.10 NAAG01000003_00003 - 0.053 13.6 0.0 0.083 13.0 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein Rota_VP2 PF05087.12 NAAG01000003_00003 - 0.056 11.6 0.0 0.069 11.3 0.0 1.1 1 0 0 1 1 1 0 Rotavirus VP2 protein PhdYeFM_antitox PF02604.19 NAAG01000003_00004 - 1.2e-08 34.6 0.2 1.4e-08 34.4 0.2 1.2 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system Dala_Dala_lig_C PF07478.13 NAAG01000003_00005 - 2.6e-32 112.1 0.1 3.6e-32 111.6 0.1 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 NAAG01000003_00005 - 1.3e-20 73.8 0.0 1.1e-19 70.8 0.0 2.2 2 1 0 2 2 2 1 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 NAAG01000003_00005 - 1.2e-05 25.0 0.0 0.0089 15.6 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_4 PF13535.6 NAAG01000003_00005 - 0.00023 20.8 0.0 0.00062 19.4 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 NAAG01000003_00005 - 0.0015 18.6 0.1 0.11 12.5 0.1 2.9 1 1 1 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 NAAG01000003_00005 - 0.069 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain HHH_5 PF14520.6 NAAG01000003_00006 - 2.8e-15 56.6 0.0 6.7e-15 55.4 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain RuvA_N PF01330.21 NAAG01000003_00006 - 4.3e-10 39.5 0.1 3.1e-09 36.8 0.1 2.1 2 0 0 2 2 2 1 RuvA N terminal domain RuvA_C PF07499.13 NAAG01000003_00006 - 2.2e-08 34.4 2.0 4.2e-08 33.5 2.0 1.5 1 0 0 1 1 1 1 RuvA, C-terminal domain HHH PF00633.23 NAAG01000003_00006 - 4.7e-07 29.4 0.1 0.0027 17.5 0.2 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 NAAG01000003_00006 - 5.6e-05 23.5 0.1 0.03 14.7 0.0 2.3 1 1 1 2 2 2 2 Ribosomal protein S13/S18 HHH_2 PF12826.7 NAAG01000003_00006 - 0.00086 19.4 0.0 1.8 8.7 0.0 2.6 1 1 1 2 2 2 2 Helix-hairpin-helix motif HHH_3 PF12836.7 NAAG01000003_00006 - 0.00095 19.4 0.0 0.033 14.5 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 NAAG01000003_00006 - 0.0011 19.5 0.7 0.0077 16.8 0.2 2.2 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 NAAG01000003_00006 - 0.0083 16.4 0.0 0.43 10.9 0.0 2.3 2 0 0 2 2 2 1 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 NAAG01000003_00006 - 0.019 15.3 0.1 0.19 12.1 0.1 2.6 2 1 0 2 2 2 0 IMS family HHH motif HHH_8 PF14716.6 NAAG01000003_00006 - 0.022 15.1 0.2 0.45 10.9 0.1 2.4 1 1 1 2 2 2 0 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 NAAG01000003_00006 - 0.032 14.1 0.0 8.3 6.3 0.0 2.3 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda FapA PF03961.13 NAAG01000003_00007 - 3.5e-30 105.0 37.0 5.2e-30 104.5 36.7 1.4 1 1 0 1 1 1 1 Flagellar Assembly Protein A FAM76 PF16046.5 NAAG01000003_00007 - 0.027 13.8 8.1 0.061 12.7 8.1 1.6 1 0 0 1 1 1 0 FAM76 protein MurJ PF03023.14 NAAG01000003_00008 - 1e-91 307.8 60.1 1.7e-91 307.1 60.1 1.3 1 1 0 1 1 1 1 Lipid II flippase MurJ tRNA-synt_1e PF01406.19 NAAG01000003_00009 - 1e-109 366.5 0.6 1.7e-109 365.8 0.6 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 NAAG01000003_00009 - 9e-14 51.0 1.5 3.4e-07 29.3 0.0 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (M) DALR_2 PF09190.11 NAAG01000003_00009 - 1.1e-07 32.2 4.6 7.2e-06 26.4 1.4 2.8 2 0 0 2 2 2 2 DALR domain tRNA-synt_1 PF00133.22 NAAG01000003_00009 - 1.6e-06 26.7 0.0 0.00047 18.5 0.0 2.6 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 NAAG01000003_00009 - 0.0002 20.4 0.2 0.02 13.8 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 NAAG01000003_00009 - 0.0023 18.0 0.0 0.0076 16.3 0.0 1.9 1 0 0 1 1 1 1 Sgs1 RecQ helicase DUF4919 PF16266.5 NAAG01000003_00009 - 0.013 15.4 0.0 0.033 14.1 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4919) ABC_membrane PF00664.23 NAAG01000003_00010 - 4.4e-48 164.3 8.4 5.8e-48 163.9 8.4 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 NAAG01000003_00010 - 4.9e-31 108.1 0.1 9e-31 107.2 0.1 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 NAAG01000003_00010 - 6e-10 38.9 5.9 1.4e-08 34.5 5.9 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 NAAG01000003_00010 - 0.00081 19.3 0.2 0.0019 18.1 0.1 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 NAAG01000003_00010 - 0.0025 18.1 0.4 0.027 14.7 0.4 2.4 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 NAAG01000003_00010 - 0.0056 16.9 0.2 0.046 14.0 0.2 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 NAAG01000003_00010 - 0.0098 15.6 0.1 0.04 13.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain ATP-synt_I PF03899.15 NAAG01000003_00010 - 0.024 15.0 0.3 0.024 15.0 0.3 3.4 3 0 0 3 3 3 0 ATP synthase I chain AAA_16 PF13191.6 NAAG01000003_00010 - 0.035 14.5 0.0 0.094 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 NAAG01000003_00010 - 0.094 12.5 0.7 0.19 11.5 0.1 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain DHO_dh PF01180.21 NAAG01000003_00011 - 2.7e-72 243.5 0.1 3.1e-72 243.3 0.1 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase ThiI PF02568.14 NAAG01000003_00011 - 0.031 13.9 0.0 0.086 12.4 0.0 1.7 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 NAAG01000003_00011 - 0.069 12.6 0.1 1.4 8.3 0.0 2.1 2 0 0 2 2 2 0 PcrB family Peptidase_M16_C PF05193.21 NAAG01000003_00012 - 7.8e-31 107.5 1.1 1.1e-29 103.8 0.3 2.4 3 0 0 3 3 3 1 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 NAAG01000003_00012 - 8.6e-25 87.5 0.0 1.9e-24 86.3 0.0 1.5 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) LuxS PF02664.15 NAAG01000003_00012 - 0.022 14.4 0.0 5.3 6.7 0.0 2.4 2 0 0 2 2 2 0 S-Ribosylhomocysteinase (LuxS) DHDPS PF00701.22 NAAG01000003_00013 - 1.8e-88 296.0 0.2 2.3e-88 295.7 0.2 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family CTK3 PF12243.8 NAAG01000003_00013 - 0.068 13.2 0.0 0.32 11.0 0.0 2.0 2 0 0 2 2 2 0 CTD kinase subunit gamma CTK3 adh_short_C2 PF13561.6 NAAG01000003_00014 - 3.4e-59 200.2 1.1 4.2e-59 200.0 1.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 NAAG01000003_00014 - 1.6e-33 115.8 2.4 1.9e-33 115.6 2.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 NAAG01000003_00014 - 0.00012 22.1 0.1 0.00025 21.0 0.1 1.5 1 1 0 1 1 1 1 KR domain RRM_3 PF08777.11 NAAG01000003_00014 - 0.016 15.3 0.3 3.1 7.9 0.2 2.3 2 0 0 2 2 2 0 RNA binding motif Lactamase_B PF00753.27 NAAG01000003_00016 - 1.7e-26 93.4 0.0 2.2e-26 93.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 NAAG01000003_00016 - 0.00014 21.5 0.2 0.00018 21.1 0.2 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain NAD_synthase PF02540.17 NAAG01000003_00017 - 3.7e-79 265.2 0.1 4.2e-79 265.1 0.1 1.0 1 0 0 1 1 1 1 NAD synthase RPAP1_N PF08621.10 NAAG01000003_00017 - 6.6e-06 25.8 0.6 0.00013 21.7 0.7 2.3 2 0 0 2 2 2 1 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 NAAG01000003_00017 - 1.2e-05 24.3 0.0 0.00092 18.1 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 NAAG01000003_00017 - 0.00031 20.3 0.0 0.0011 18.5 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 NAAG01000003_00017 - 0.0013 18.5 0.0 0.002 17.8 0.0 1.4 1 1 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 NAAG01000003_00017 - 0.04 13.7 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 PP-loop family LpxK PF02606.14 NAAG01000003_00018 - 1.6e-38 132.6 0.0 5.4e-28 98.0 0.0 2.0 1 1 1 2 2 2 2 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 NAAG01000003_00018 - 0.051 14.0 0.2 0.16 12.4 0.1 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PALP PF00291.25 NAAG01000003_00019 - 1.4e-09 37.8 0.0 2.3e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 NAAG01000003_00019 - 2.1e-07 31.1 0.3 1.2e-06 28.6 0.0 2.4 3 0 0 3 3 3 1 Threonine synthase N terminus CbiA PF01656.23 NAAG01000003_00019 - 0.039 14.0 0.0 0.59 10.2 0.0 2.6 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain CTP_transf_3 PF02348.19 NAAG01000003_00020 - 9.6e-46 156.5 0.3 1.2e-45 156.1 0.3 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 NAAG01000003_00020 - 1.3e-05 25.6 0.0 1.6e-05 25.4 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain HTH_19 PF12844.7 NAAG01000003_00020 - 0.0091 16.0 2.0 0.047 13.7 0.4 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain Mur_ligase_M PF08245.12 NAAH01000003_00002 - 3.6e-20 72.8 0.8 1.9e-19 70.4 0.1 2.4 2 1 0 2 2 2 1 Mur ligase middle domain Mur_ligase_C PF02875.21 NAAH01000003_00002 - 0.0043 17.3 0.0 0.011 16.0 0.0 1.7 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain Abhydrolase_1 PF00561.20 NAAH01000003_00003 - 5.1e-09 36.2 0.0 3.3e-05 23.7 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 NAAH01000003_00003 - 6.4e-07 30.2 0.0 2.4e-06 28.3 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 NAAH01000003_00003 - 2.5e-05 23.7 0.0 3.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 FSH1 PF03959.13 NAAH01000003_00003 - 0.0031 17.2 0.1 0.26 10.9 0.0 2.5 2 1 0 2 2 2 1 Serine hydrolase (FSH1) Lipase_3 PF01764.25 NAAH01000003_00003 - 0.018 14.9 0.0 0.051 13.5 0.0 1.7 2 0 0 2 2 2 0 Lipase (class 3) Abhydrolase_4 PF08386.10 NAAH01000003_00003 - 0.053 13.6 0.0 0.083 13.0 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein Rota_VP2 PF05087.12 NAAH01000003_00003 - 0.056 11.6 0.0 0.069 11.3 0.0 1.1 1 0 0 1 1 1 0 Rotavirus VP2 protein PhdYeFM_antitox PF02604.19 NAAH01000003_00004 - 1.2e-08 34.6 0.2 1.4e-08 34.4 0.2 1.2 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system Dala_Dala_lig_C PF07478.13 NAAH01000003_00005 - 2.6e-32 112.1 0.1 3.6e-32 111.6 0.1 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 NAAH01000003_00005 - 1.3e-20 73.8 0.0 1.1e-19 70.8 0.0 2.2 2 1 0 2 2 2 1 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 NAAH01000003_00005 - 1.2e-05 25.0 0.0 0.0089 15.6 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_4 PF13535.6 NAAH01000003_00005 - 0.00023 20.8 0.0 0.00062 19.4 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 NAAH01000003_00005 - 0.0015 18.6 0.1 0.11 12.5 0.1 2.9 1 1 1 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 NAAH01000003_00005 - 0.069 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain HHH_5 PF14520.6 NAAH01000003_00006 - 2.8e-15 56.6 0.0 6.7e-15 55.4 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain RuvA_N PF01330.21 NAAH01000003_00006 - 4.3e-10 39.5 0.1 3.1e-09 36.8 0.1 2.1 2 0 0 2 2 2 1 RuvA N terminal domain RuvA_C PF07499.13 NAAH01000003_00006 - 2.2e-08 34.4 2.0 4.2e-08 33.5 2.0 1.5 1 0 0 1 1 1 1 RuvA, C-terminal domain HHH PF00633.23 NAAH01000003_00006 - 4.7e-07 29.4 0.1 0.0027 17.5 0.2 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 NAAH01000003_00006 - 5.6e-05 23.5 0.1 0.03 14.7 0.0 2.3 1 1 1 2 2 2 2 Ribosomal protein S13/S18 HHH_2 PF12826.7 NAAH01000003_00006 - 0.00086 19.4 0.0 1.8 8.7 0.0 2.6 1 1 1 2 2 2 2 Helix-hairpin-helix motif HHH_3 PF12836.7 NAAH01000003_00006 - 0.00095 19.4 0.0 0.033 14.5 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 NAAH01000003_00006 - 0.0011 19.5 0.7 0.0077 16.8 0.2 2.2 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 NAAH01000003_00006 - 0.0083 16.4 0.0 0.43 10.9 0.0 2.3 2 0 0 2 2 2 1 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 NAAH01000003_00006 - 0.019 15.3 0.1 0.19 12.1 0.1 2.6 2 1 0 2 2 2 0 IMS family HHH motif HHH_8 PF14716.6 NAAH01000003_00006 - 0.022 15.1 0.2 0.45 10.9 0.1 2.4 1 1 1 2 2 2 0 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 NAAH01000003_00006 - 0.032 14.1 0.0 8.3 6.3 0.0 2.3 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda FapA PF03961.13 NAAH01000003_00007 - 3.5e-30 105.0 37.0 5.2e-30 104.5 36.7 1.4 1 1 0 1 1 1 1 Flagellar Assembly Protein A FAM76 PF16046.5 NAAH01000003_00007 - 0.027 13.8 8.1 0.061 12.7 8.1 1.6 1 0 0 1 1 1 0 FAM76 protein MurJ PF03023.14 NAAH01000003_00008 - 1e-91 307.8 60.1 1.7e-91 307.1 60.1 1.3 1 1 0 1 1 1 1 Lipid II flippase MurJ tRNA-synt_1e PF01406.19 NAAH01000003_00009 - 1e-109 366.5 0.6 1.7e-109 365.8 0.6 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 NAAH01000003_00009 - 9e-14 51.0 1.5 3.4e-07 29.3 0.0 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (M) DALR_2 PF09190.11 NAAH01000003_00009 - 1.1e-07 32.2 4.6 7.2e-06 26.4 1.4 2.8 2 0 0 2 2 2 2 DALR domain tRNA-synt_1 PF00133.22 NAAH01000003_00009 - 1.6e-06 26.7 0.0 0.00047 18.5 0.0 2.6 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 NAAH01000003_00009 - 0.0002 20.4 0.2 0.02 13.8 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 NAAH01000003_00009 - 0.0023 18.0 0.0 0.0076 16.3 0.0 1.9 1 0 0 1 1 1 1 Sgs1 RecQ helicase DUF4919 PF16266.5 NAAH01000003_00009 - 0.013 15.4 0.0 0.033 14.1 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4919) ABC_membrane PF00664.23 NAAH01000003_00010 - 4.4e-48 164.3 8.4 5.8e-48 163.9 8.4 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 NAAH01000003_00010 - 4.9e-31 108.1 0.1 9e-31 107.2 0.1 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 NAAH01000003_00010 - 6e-10 38.9 5.9 1.4e-08 34.5 5.9 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 NAAH01000003_00010 - 0.00081 19.3 0.2 0.0019 18.1 0.1 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 NAAH01000003_00010 - 0.0025 18.1 0.4 0.027 14.7 0.4 2.4 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 NAAH01000003_00010 - 0.0056 16.9 0.2 0.046 14.0 0.2 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 NAAH01000003_00010 - 0.0098 15.6 0.1 0.04 13.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain ATP-synt_I PF03899.15 NAAH01000003_00010 - 0.024 15.0 0.3 0.024 15.0 0.3 3.4 3 0 0 3 3 3 0 ATP synthase I chain AAA_16 PF13191.6 NAAH01000003_00010 - 0.035 14.5 0.0 0.094 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 NAAH01000003_00010 - 0.094 12.5 0.7 0.19 11.5 0.1 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain DHO_dh PF01180.21 NAAH01000003_00011 - 2.7e-72 243.5 0.1 3.1e-72 243.3 0.1 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase ThiI PF02568.14 NAAH01000003_00011 - 0.031 13.9 0.0 0.086 12.4 0.0 1.7 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 NAAH01000003_00011 - 0.069 12.6 0.1 1.4 8.3 0.0 2.1 2 0 0 2 2 2 0 PcrB family Peptidase_M16_C PF05193.21 NAAH01000003_00012 - 7.8e-31 107.5 1.1 1.1e-29 103.8 0.3 2.4 3 0 0 3 3 3 1 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 NAAH01000003_00012 - 8.6e-25 87.5 0.0 1.9e-24 86.3 0.0 1.5 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) LuxS PF02664.15 NAAH01000003_00012 - 0.022 14.4 0.0 5.3 6.7 0.0 2.4 2 0 0 2 2 2 0 S-Ribosylhomocysteinase (LuxS) DHDPS PF00701.22 NAAH01000003_00013 - 1.8e-88 296.0 0.2 2.3e-88 295.7 0.2 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family CTK3 PF12243.8 NAAH01000003_00013 - 0.068 13.2 0.0 0.32 11.0 0.0 2.0 2 0 0 2 2 2 0 CTD kinase subunit gamma CTK3 adh_short_C2 PF13561.6 NAAH01000003_00014 - 3.4e-59 200.2 1.1 4.2e-59 200.0 1.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 NAAH01000003_00014 - 1.6e-33 115.8 2.4 1.9e-33 115.6 2.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 NAAH01000003_00014 - 0.00012 22.1 0.1 0.00025 21.0 0.1 1.5 1 1 0 1 1 1 1 KR domain RRM_3 PF08777.11 NAAH01000003_00014 - 0.016 15.3 0.3 3.1 7.9 0.2 2.3 2 0 0 2 2 2 0 RNA binding motif Lactamase_B PF00753.27 NAAH01000003_00016 - 1.7e-26 93.4 0.0 2.2e-26 93.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 NAAH01000003_00016 - 0.00014 21.5 0.2 0.00018 21.1 0.2 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain NAD_synthase PF02540.17 NAAH01000003_00017 - 3.7e-79 265.2 0.1 4.2e-79 265.1 0.1 1.0 1 0 0 1 1 1 1 NAD synthase RPAP1_N PF08621.10 NAAH01000003_00017 - 6.6e-06 25.8 0.6 0.00013 21.7 0.7 2.3 2 0 0 2 2 2 1 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 NAAH01000003_00017 - 1.2e-05 24.3 0.0 0.00092 18.1 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 NAAH01000003_00017 - 0.00031 20.3 0.0 0.0011 18.5 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 NAAH01000003_00017 - 0.0013 18.5 0.0 0.002 17.8 0.0 1.4 1 1 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 NAAH01000003_00017 - 0.04 13.7 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 PP-loop family LpxK PF02606.14 NAAH01000003_00018 - 1.6e-38 132.6 0.0 5.4e-28 98.0 0.0 2.0 1 1 1 2 2 2 2 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 NAAH01000003_00018 - 0.051 14.0 0.2 0.16 12.4 0.1 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PALP PF00291.25 NAAH01000003_00019 - 1.4e-09 37.8 0.0 2.3e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 NAAH01000003_00019 - 2.1e-07 31.1 0.3 1.2e-06 28.6 0.0 2.4 3 0 0 3 3 3 1 Threonine synthase N terminus CbiA PF01656.23 NAAH01000003_00019 - 0.039 14.0 0.0 0.59 10.2 0.0 2.6 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain CTP_transf_3 PF02348.19 NAAH01000003_00020 - 9.6e-46 156.5 0.3 1.2e-45 156.1 0.3 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 NAAH01000003_00020 - 1.3e-05 25.6 0.0 1.6e-05 25.4 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain HTH_19 PF12844.7 NAAH01000003_00020 - 0.0091 16.0 2.0 0.047 13.7 0.4 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain MAF_flag10 PF01973.18 NAAH01000019_00001 - 3.7e-42 143.9 0.7 5.4e-42 143.4 0.1 1.6 2 0 0 2 2 2 1 Protein of unknown function DUF115 Med15_fungi PF05397.12 NAAH01000019_00001 - 0.011 16.0 0.7 0.15 12.4 0.2 2.3 2 0 0 2 2 2 0 Mediator complex subunit 15 # # Program: hmmscan # Version: 3.1b2 (February 2015) # Pipeline mode: SCAN # Query file: total.faa # Target file: /mnt/DGK_KLIF/data/db/pfam/Pfam-A.hmm # Option settings: hmmscan --tblout pfam_table.txt --domtblout pfam_domtbl.txt -E 1E-1 --cpu 16 /mnt/DGK_KLIF/data/db/pfam/Pfam-A.hmm total.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Campylobacter_plasmids_Linda/cleanedup/nohit # Date: Mon Sep 27 11:34:03 2021 # [ok]