# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Reticulon PF02453.17 157 AAFJ01000010_00004 - 71 0.011 15.7 3.4 1 1 6.2e-07 0.011 15.7 3.4 101 143 3 45 1 63 0.95 Reticulon TK PF00265.18 177 AAFJ01000010_00005 - 167 7e-20 71.6 1.2 1 1 2.7e-23 1.6e-19 70.5 1.2 3 177 2 162 1 162 0.81 Thymidine kinase AAA_14 PF13173.6 131 AAFJ01000010_00005 - 167 0.003 17.6 0.3 1 1 6.7e-07 0.004 17.2 0.3 5 99 3 103 1 117 0.58 AAA domain Terminase_6 PF03237.15 215 AAFJ01000010_00005 - 167 0.0088 15.7 0.4 1 1 5.1e-06 0.03 14.0 0.4 2 57 5 64 4 120 0.78 Terminase-like family FcoT PF10862.8 156 AAFJ01000010_00006 - 86 0.031 13.9 0.1 1 1 5.7e-06 0.034 13.7 0.1 69 125 26 83 13 86 0.83 FcoT-like thioesterase domain ECH_2 PF16113.5 334 AAFJ01000010_00006 - 86 0.044 13.3 0.5 1 1 7.5e-06 0.045 13.3 0.5 166 240 5 80 1 86 0.77 Enoyl-CoA hydratase/isomerase EF-hand_7 PF13499.6 71 AAFJ01000010_00006 - 86 0.068 13.6 0.2 1 1 0.00044 2.6 8.5 0.2 42 70 28 75 6 76 0.55 EF-hand domain pair DUF3973 PF13119.6 40 AAFJ01000010_00007 - 73 0.088 12.9 2.7 1 2 0.018 3.2e+02 1.5 0.0 12 23 15 26 11 38 0.70 Domain of unknown function (DUF3973) DUF3973 PF13119.6 40 AAFJ01000010_00007 - 73 0.088 12.9 2.7 2 2 1.9e-05 0.35 11.0 1.3 1 28 41 66 41 73 0.86 Domain of unknown function (DUF3973) Toprim_2 PF13155.6 90 AAFJ01000010_00010 - 341 2.2e-11 44.0 0.0 1 1 9.5e-15 4.3e-11 43.1 0.0 1 90 238 328 238 328 0.90 Toprim-like Toprim_3 PF13362.6 95 AAFJ01000010_00010 - 341 4.2e-05 23.8 0.0 1 1 1.9e-08 8.4e-05 22.9 0.0 2 90 237 329 236 332 0.76 Toprim domain zf-CHC2 PF01807.20 98 AAFJ01000010_00010 - 341 0.0061 16.4 0.1 1 2 8.3e-06 0.037 13.8 0.1 48 92 3 46 1 51 0.84 CHC2 zinc finger zf-CHC2 PF01807.20 98 AAFJ01000010_00010 - 341 0.0061 16.4 0.1 2 2 0.37 1.6e+03 -1.1 0.0 47 64 276 293 271 300 0.80 CHC2 zinc finger DUF3854 PF12965.7 130 AAFJ01000010_00010 - 341 0.094 12.7 0.0 1 1 6.4e-05 0.29 11.1 0.0 68 126 279 331 267 334 0.85 Domain of unknown function (DUF3854) Peptidase_C39 PF03412.15 133 AAFJ01000010_00015 - 197 2.5e-17 62.9 0.0 1 1 3.7e-21 3.3e-17 62.5 0.0 2 124 33 162 32 176 0.81 Peptidase C39 family Peptidase_C70 PF12385.8 145 AAFJ01000010_00015 - 197 3e-05 24.0 0.0 1 1 4.7e-09 4.2e-05 23.6 0.0 11 131 37 147 20 158 0.79 Papain-like cysteine protease AvrRpt2 Phage_integrase PF00589.22 172 AAFJ01000010_00017 - 314 2.8e-20 72.8 2.1 1 1 1.2e-23 4.4e-20 72.2 2.1 2 170 131 302 130 304 0.85 Phage integrase family Phage_int_SAM_1 PF02899.17 84 AAFJ01000010_00017 - 314 5.5e-05 23.4 2.7 1 3 2.3e-05 0.081 13.2 0.1 3 60 18 75 16 79 0.87 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 AAFJ01000010_00017 - 314 5.5e-05 23.4 2.7 2 3 0.00039 1.4 9.3 0.0 10 37 78 104 76 110 0.88 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 AAFJ01000010_00017 - 314 5.5e-05 23.4 2.7 3 3 2 7.2e+03 -2.6 0.1 37 59 125 147 118 153 0.61 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 AAFJ01000010_00017 - 314 0.00022 21.5 8.0 1 2 6.3e-08 0.00022 21.5 8.0 7 80 17 98 11 105 0.84 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 AAFJ01000010_00017 - 314 0.00022 21.5 8.0 2 2 0.39 1.4e+03 -0.3 0.3 4 17 218 231 210 293 0.72 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 85 AAFJ01000010_00017 - 314 0.0026 18.2 5.5 1 2 7.2e-07 0.0026 18.2 5.5 2 79 16 102 15 108 0.89 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 AAFJ01000010_00017 - 314 0.0026 18.2 5.5 2 2 1.8 6.4e+03 -2.3 0.1 20 44 188 211 172 233 0.57 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.7 149 AAFJ01000010_00017 - 314 0.0035 17.5 0.4 1 1 1.9e-06 0.0067 16.5 0.4 30 148 156 271 120 272 0.76 Integrase HMG-CoA_red PF00368.18 367 AAFJ01000010_00018 - 74 0.083 11.9 0.0 1 1 5.8e-06 0.1 11.6 0.0 166 202 29 65 27 73 0.91 Hydroxymethylglutaryl-coenzyme A reductase WGR PF05406.15 80 AAFJ01000010_00019 - 75 0.00012 22.0 0.3 1 1 2.4e-08 0.00014 21.8 0.3 6 73 7 74 2 75 0.88 WGR domain Latarcin PF10279.9 81 AAFJ01000010_00019 - 75 0.01 16.2 0.1 1 1 2.5e-06 0.015 15.7 0.1 48 70 47 69 45 74 0.84 Latarcin precursor Tantalus PF15386.6 59 AAFJ01000010_00019 - 75 0.047 13.8 0.1 1 2 7.9e-06 0.047 13.8 0.1 15 47 28 60 24 64 0.88 Drosophila Tantalus-like Tantalus PF15386.6 59 AAFJ01000010_00019 - 75 0.047 13.8 0.1 2 2 0.37 2.2e+03 -1.2 0.7 6 14 64 72 61 73 0.74 Drosophila Tantalus-like HD PF01966.22 122 AAFJ01000010_00021 - 539 1.8e-10 41.1 0.9 1 1 4e-14 3.6e-10 40.1 0.9 3 99 227 335 225 395 0.81 HD domain HD_6 PF18019.1 196 AAFJ01000010_00021 - 539 0.029 14.5 0.1 1 1 6.9e-06 0.062 13.4 0.1 45 135 241 324 218 370 0.67 HD domain TrwB_AAD_bind PF10412.9 386 AAFJ01000010_00022 - 459 4e-17 62.2 0.0 1 1 4e-20 6.4e-17 61.5 0.0 10 323 44 387 38 422 0.78 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 469 AAFJ01000010_00022 - 459 2e-15 56.6 0.5 1 1 1.6e-18 2.7e-15 56.2 0.5 40 384 33 387 7 405 0.81 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 AAFJ01000010_00022 - 459 1.3e-10 41.3 0.1 1 1 1.6e-13 2.7e-10 40.3 0.1 3 83 311 390 309 421 0.90 TraM recognition site of TraD and TraG DUF87 PF01935.17 227 AAFJ01000010_00022 - 459 1.2e-05 25.6 0.5 1 2 1.8e-08 2.9e-05 24.3 0.1 12 152 39 205 27 288 0.61 Helicase HerA, central domain DUF87 PF01935.17 227 AAFJ01000010_00022 - 459 1.2e-05 25.6 0.5 2 2 1.3 2.1e+03 -1.5 0.0 184 200 361 377 303 439 0.57 Helicase HerA, central domain AAA_10 PF12846.7 362 AAFJ01000010_00022 - 459 1.3e-05 24.3 0.3 1 2 7.7e-06 0.012 14.5 0.0 20 71 48 98 44 234 0.74 AAA-like domain AAA_10 PF12846.7 362 AAFJ01000010_00022 - 459 1.3e-05 24.3 0.3 2 2 0.0012 1.9 7.3 0.0 263 312 326 382 320 391 0.84 AAA-like domain DUF853 PF05872.12 504 AAFJ01000010_00022 - 459 0.0034 16.0 0.0 1 2 4.6e-06 0.0076 14.9 0.0 14 67 40 95 28 125 0.78 Bacterial protein of unknown function (DUF853) DUF853 PF05872.12 504 AAFJ01000010_00022 - 459 0.0034 16.0 0.0 2 2 2.2 3.6e+03 -3.9 0.0 213 265 262 316 258 320 0.65 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.6 137 AAFJ01000010_00022 - 459 0.007 16.6 0.0 1 1 1.4e-05 0.023 15.0 0.0 4 29 48 73 45 109 0.85 AAA domain AAA_16 PF13191.6 170 AAFJ01000010_00022 - 459 0.016 15.6 0.0 1 3 4.8e-05 0.078 13.4 0.0 23 61 48 88 43 112 0.68 AAA ATPase domain AAA_16 PF13191.6 170 AAFJ01000010_00022 - 459 0.016 15.6 0.0 2 3 4.1 6.7e+03 -2.7 0.0 7 7 189 189 147 223 0.52 AAA ATPase domain AAA_16 PF13191.6 170 AAFJ01000010_00022 - 459 0.016 15.6 0.0 3 3 2.5 4.1e+03 -2.0 0.0 106 129 341 372 275 378 0.65 AAA ATPase domain ATPase_2 PF01637.18 233 AAFJ01000010_00022 - 459 0.018 14.9 0.1 1 1 3.9e-05 0.064 13.2 0.1 21 57 50 86 43 241 0.85 ATPase domain predominantly from Archaea ABC_tran PF00005.27 137 AAFJ01000010_00022 - 459 0.034 14.7 0.1 1 1 6e-05 0.097 13.2 0.1 15 80 53 171 47 350 0.76 ABC transporter Zeta_toxin PF06414.12 199 AAFJ01000010_00022 - 459 0.042 13.1 0.0 1 1 5.3e-05 0.087 12.1 0.0 20 51 53 85 43 98 0.85 Zeta toxin HTH_3 PF01381.22 55 AAFJ01000010_00025 - 86 1.2e-10 41.3 0.0 1 1 3.2e-14 1.9e-10 40.6 0.0 1 55 13 67 13 67 0.97 Helix-turn-helix HTH_19 PF12844.7 65 AAFJ01000010_00025 - 86 1.2e-08 34.8 0.0 1 1 2.5e-12 1.5e-08 34.5 0.0 1 64 10 72 10 73 0.97 Helix-turn-helix domain HTH_31 PF13560.6 64 AAFJ01000010_00025 - 86 4.5e-05 23.7 0.0 1 2 1.7e-08 0.0001 22.5 0.0 2 47 9 53 8 67 0.89 Helix-turn-helix domain HTH_31 PF13560.6 64 AAFJ01000010_00025 - 86 4.5e-05 23.7 0.0 2 2 0.43 2.5e+03 -1.1 0.0 31 47 64 80 61 83 0.70 Helix-turn-helix domain AAA_19 PF13245.6 146 AAFJ01000010_00026 - 487 6.3e-14 52.5 0.2 1 2 2.6e-15 4.6e-12 46.5 0.0 6 146 12 233 6 233 0.79 AAA domain AAA_19 PF13245.6 146 AAFJ01000010_00026 - 487 6.3e-14 52.5 0.2 2 2 0.038 68 3.8 0.1 54 126 309 383 263 391 0.68 AAA domain UvrD-helicase PF00580.21 315 AAFJ01000010_00026 - 487 6.5e-12 45.6 17.8 1 3 1.4e-05 0.026 14.1 0.2 1 33 3 36 3 125 0.77 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 AAFJ01000010_00026 - 487 6.5e-12 45.6 17.8 2 3 4.6e-13 8.3e-10 38.7 1.7 246 311 182 244 129 250 0.72 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 AAFJ01000010_00026 - 487 6.5e-12 45.6 17.8 3 3 1.3 2.3e+03 -2.2 3.8 168 231 318 439 245 485 0.47 UvrD/REP helicase N-terminal domain Viral_helicase1 PF01443.18 234 AAFJ01000010_00026 - 487 6.1e-11 42.5 0.3 1 3 0.002 3.6 7.3 0.0 2 55 20 75 19 82 0.72 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 AAFJ01000010_00026 - 487 6.1e-11 42.5 0.3 2 3 1.6e-08 2.8e-05 24.0 0.1 44 198 175 330 133 332 0.73 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 AAFJ01000010_00026 - 487 6.1e-11 42.5 0.3 3 3 0.0015 2.7 7.7 0.0 186 230 409 464 356 467 0.76 Viral (Superfamily 1) RNA helicase UvrD_C PF13361.6 349 AAFJ01000010_00026 - 487 4.3e-10 39.5 16.6 1 2 0.16 3e+02 0.6 0.1 260 294 41 75 30 76 0.81 UvrD-like helicase C-terminal domain UvrD_C PF13361.6 349 AAFJ01000010_00026 - 487 4.3e-10 39.5 16.6 2 2 2.6e-13 4.7e-10 39.4 12.7 189 345 160 467 101 469 0.68 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 52 AAFJ01000010_00026 - 487 6e-09 35.6 0.0 1 1 2.7e-11 4.8e-08 32.7 0.0 5 50 409 465 406 467 0.88 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 192 AAFJ01000010_00026 - 487 8.1e-06 25.7 0.0 1 2 2.5e-06 0.0045 16.7 0.0 2 79 3 79 2 98 0.71 AAA domain AAA_30 PF13604.6 192 AAFJ01000010_00026 - 487 8.1e-06 25.7 0.0 2 2 0.0029 5.2 6.7 0.0 84 161 187 263 154 287 0.69 AAA domain PhoH PF02562.16 205 AAFJ01000010_00026 - 487 0.00049 19.6 0.2 1 3 0.0022 3.9 6.9 0.0 6 50 4 43 1 63 0.74 PhoH-like protein PhoH PF02562.16 205 AAFJ01000010_00026 - 487 0.00049 19.6 0.2 2 3 0.00026 0.47 9.9 0.0 118 186 191 253 188 268 0.77 PhoH-like protein PhoH PF02562.16 205 AAFJ01000010_00026 - 487 0.00049 19.6 0.2 3 3 2.7 4.8e+03 -3.2 0.0 69 92 368 391 366 409 0.77 PhoH-like protein DUF2075 PF09848.9 363 AAFJ01000010_00026 - 487 0.02 14.2 0.3 1 2 0.0018 3.2 6.9 0.0 3 53 18 64 16 88 0.81 Uncharacterized conserved protein (DUF2075) DUF2075 PF09848.9 363 AAFJ01000010_00026 - 487 0.02 14.2 0.3 2 2 0.0073 13 4.9 0.1 74 183 176 270 138 308 0.75 Uncharacterized conserved protein (DUF2075) Peptidase_M6 PF05547.11 656 AAFJ01000010_00026 - 487 0.025 12.9 0.1 1 1 2e-05 0.037 12.4 0.1 432 493 176 235 152 259 0.82 Immune inhibitor A peptidase M6 Helicase_RecD PF05127.14 177 AAFJ01000010_00026 - 487 0.04 13.8 0.7 1 3 0.052 94 2.8 0.0 2 46 21 65 20 93 0.67 Helicase Helicase_RecD PF05127.14 177 AAFJ01000010_00026 - 487 0.04 13.8 0.7 2 3 0.0011 2 8.2 0.0 77 159 179 258 135 267 0.74 Helicase Helicase_RecD PF05127.14 177 AAFJ01000010_00026 - 487 0.04 13.8 0.7 3 3 1.7 3e+03 -2.1 0.0 55 98 431 474 409 475 0.76 Helicase Thioredoxin_7 PF13899.6 83 AAFJ01000010_00027 - 141 4.1e-05 23.7 0.0 1 1 8.6e-09 5.2e-05 23.4 0.0 8 63 30 85 23 106 0.75 Thioredoxin-like Thioredoxin_2 PF13098.6 109 AAFJ01000010_00027 - 141 0.00038 20.9 0.4 1 1 1.9e-07 0.0011 19.4 0.4 4 50 37 79 34 128 0.82 Thioredoxin-like domain Thioredox_DsbH PF03190.15 163 AAFJ01000010_00027 - 141 0.047 13.6 0.2 1 1 9.1e-06 0.055 13.4 0.2 29 81 31 83 25 133 0.92 Protein of unknown function, DUF255 TrbC_Ftype PF09673.10 112 AAFJ01000010_00028 - 313 2e-16 60.0 0.0 1 1 7.7e-20 3.5e-16 59.3 0.0 1 112 158 289 158 289 0.85 Type-F conjugative transfer system pilin assembly protein DUF1694 PF07997.11 117 AAFJ01000010_00028 - 313 0.0015 18.6 0.5 1 1 1.9e-06 0.0085 16.2 0.5 40 92 134 186 120 192 0.90 Protein of unknown function (DUF1694) DUF3502 PF12010.8 130 AAFJ01000010_00028 - 313 0.028 15.0 2.0 1 2 2.4 1.1e+04 -3.0 4.5 69 69 101 101 19 189 0.60 Domain of unknown function (DUF3502) DUF3502 PF12010.8 130 AAFJ01000010_00028 - 313 0.028 15.0 2.0 2 2 6.3e-06 0.028 15.0 2.0 51 124 236 308 190 310 0.78 Domain of unknown function (DUF3502) Thioredoxin PF00085.20 103 AAFJ01000010_00028 - 313 0.039 14.0 0.3 1 1 2.5e-05 0.11 12.5 0.3 52 94 223 266 212 273 0.82 Thioredoxin TraU PF06834.11 307 AAFJ01000010_00029 - 333 9.6e-97 323.9 0.0 1 1 6.1e-101 1.1e-96 323.8 0.0 1 306 34 332 34 333 0.95 TraU protein RhoGAP PF00620.27 152 AAFJ01000010_00031 - 199 0.0012 18.7 1.6 1 2 6.6e-08 0.0012 18.7 1.6 24 112 47 132 37 134 0.81 RhoGAP domain RhoGAP PF00620.27 152 AAFJ01000010_00031 - 199 0.0012 18.7 1.6 2 2 0.24 4.4e+03 -2.6 0.0 47 55 170 178 135 192 0.49 RhoGAP domain ALP_N PF17989.1 147 AAFJ01000010_00034 - 305 7.7e-13 48.9 0.1 1 1 1.4e-16 1.3e-12 48.1 0.1 1 122 9 125 9 143 0.83 Actin like proteins N terminal domain FtsA PF14450.6 103 AAFJ01000010_00034 - 305 0.00018 21.9 0.2 1 2 0.00094 8.4 6.9 0.0 1 17 8 24 8 37 0.87 Cell division protein FtsA FtsA PF14450.6 103 AAFJ01000010_00034 - 305 0.00018 21.9 0.2 2 2 1.1e-05 0.099 13.1 0.0 1 43 157 201 157 285 0.80 Cell division protein FtsA DUF4879 PF16219.5 124 AAFJ01000010_00035 - 90 0.0012 19.0 0.2 1 1 7.4e-08 0.0013 18.9 0.2 54 105 22 73 4 83 0.87 Domain of unknown function (DUF4879) YopX PF09643.10 131 AAFJ01000010_00036 - 148 3e-12 46.7 2.7 1 2 0.0081 1.5e+02 2.5 0.0 2 15 8 21 7 29 0.87 YopX protein YopX PF09643.10 131 AAFJ01000010_00036 - 148 3e-12 46.7 2.7 2 2 1.3e-15 2.3e-11 43.9 1.0 44 131 32 127 20 127 0.72 YopX protein DUF4600 PF15372.6 128 AAFJ01000010_00037 - 82 0.0093 16.4 0.2 1 1 1.2e-06 0.011 16.2 0.2 37 96 7 67 2 81 0.80 Domain of unknown function (DUF4600) TMF_TATA_bd PF12325.8 115 AAFJ01000010_00037 - 82 0.023 14.9 0.1 1 1 3.9e-06 0.035 14.3 0.1 27 59 22 54 14 78 0.86 TATA element modulatory factor 1 TATA binding YopX PF09643.10 131 AAFJ01000010_00038 - 120 2.8e-08 33.9 0.6 1 1 2.2e-12 4e-08 33.4 0.6 49 131 42 119 4 119 0.75 YopX protein HTH_17 PF12728.7 51 AAFJ01000010_00041 - 169 2.5e-07 30.7 0.0 1 2 0.00089 1.2 9.3 0.0 2 27 29 55 28 65 0.77 Helix-turn-helix domain HTH_17 PF12728.7 51 AAFJ01000010_00041 - 169 2.5e-07 30.7 0.0 2 2 8.2e-07 0.0011 19.1 0.0 5 27 99 121 90 127 0.92 Helix-turn-helix domain HTH_3 PF01381.22 55 AAFJ01000010_00041 - 169 1.6e-05 24.8 0.0 1 2 4.9e-05 0.067 13.3 0.0 2 29 21 48 20 59 0.89 Helix-turn-helix HTH_3 PF01381.22 55 AAFJ01000010_00041 - 169 1.6e-05 24.8 0.0 2 2 0.0012 1.7 8.8 0.0 6 29 92 115 89 125 0.90 Helix-turn-helix HTH_19 PF12844.7 65 AAFJ01000010_00041 - 169 6.8e-05 22.8 0.5 1 2 2.3e-06 0.0032 17.4 0.2 8 64 24 106 17 107 0.88 Helix-turn-helix domain HTH_19 PF12844.7 65 AAFJ01000010_00041 - 169 6.8e-05 22.8 0.5 2 2 0.0017 2.4 8.2 0.0 10 32 93 115 88 144 0.84 Helix-turn-helix domain MerR PF00376.23 38 AAFJ01000010_00041 - 169 0.00015 21.4 0.0 1 2 0.0015 2 8.3 0.0 1 19 30 48 30 56 0.94 MerR family regulatory protein MerR PF00376.23 38 AAFJ01000010_00041 - 169 0.00015 21.4 0.0 2 2 0.0002 0.27 11.0 0.0 4 21 100 117 99 125 0.88 MerR family regulatory protein HTH_26 PF13443.6 63 AAFJ01000010_00041 - 169 0.0011 19.4 0.1 1 2 0.023 31 5.1 0.0 5 31 23 49 12 59 0.85 Cro/C1-type HTH DNA-binding domain HTH_26 PF13443.6 63 AAFJ01000010_00041 - 169 0.0011 19.4 0.1 2 2 0.00019 0.26 11.8 0.1 4 42 89 125 88 129 0.88 Cro/C1-type HTH DNA-binding domain Phage_CI_repr PF07022.13 65 AAFJ01000010_00041 - 169 0.0014 18.7 0.0 1 2 0.97 1.3e+03 -0.5 0.0 16 26 32 42 24 65 0.80 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 AAFJ01000010_00041 - 169 0.0014 18.7 0.0 2 2 5.3e-06 0.0073 16.4 0.0 5 46 89 129 86 136 0.83 Bacteriophage CI repressor helix-turn-helix domain Terminase_5 PF06056.12 58 AAFJ01000010_00041 - 169 0.0024 17.7 0.2 1 3 0.65 9e+02 -0.1 0.0 21 34 36 49 30 53 0.83 Putative ATPase subunit of terminase (gpP-like) Terminase_5 PF06056.12 58 AAFJ01000010_00041 - 169 0.0024 17.7 0.2 2 3 0.77 1.1e+03 -0.4 0.1 29 49 58 78 41 83 0.73 Putative ATPase subunit of terminase (gpP-like) Terminase_5 PF06056.12 58 AAFJ01000010_00041 - 169 0.0024 17.7 0.2 3 3 2.7e-05 0.037 13.9 0.0 17 37 99 119 97 128 0.86 Putative ATPase subunit of terminase (gpP-like) HTH_Crp_2 PF13545.6 68 AAFJ01000010_00041 - 169 0.0028 17.6 0.0 1 3 0.29 4e+02 1.1 0.0 17 38 24 45 9 48 0.77 Crp-like helix-turn-helix domain HTH_Crp_2 PF13545.6 68 AAFJ01000010_00041 - 169 0.0028 17.6 0.0 2 3 3.8e-05 0.053 13.5 0.0 17 38 91 112 67 114 0.79 Crp-like helix-turn-helix domain HTH_Crp_2 PF13545.6 68 AAFJ01000010_00041 - 169 0.0028 17.6 0.0 3 3 2.9 3.9e+03 -2.1 0.0 4 13 139 148 129 169 0.50 Crp-like helix-turn-helix domain HTH_23 PF13384.6 50 AAFJ01000010_00041 - 169 0.0046 16.7 0.0 1 3 0.013 17 5.3 0.0 17 37 28 48 22 52 0.82 Homeodomain-like domain HTH_23 PF13384.6 50 AAFJ01000010_00041 - 169 0.0046 16.7 0.0 2 3 2.8 3.9e+03 -2.2 0.1 34 42 59 67 59 73 0.72 Homeodomain-like domain HTH_23 PF13384.6 50 AAFJ01000010_00041 - 169 0.0046 16.7 0.0 3 3 0.0016 2.2 8.2 0.0 21 37 99 115 89 120 0.91 Homeodomain-like domain MerR_1 PF13411.6 69 AAFJ01000010_00041 - 169 0.0086 16.2 0.0 1 2 0.034 47 4.2 0.0 2 24 30 52 29 67 0.84 MerR HTH family regulatory protein MerR_1 PF13411.6 69 AAFJ01000010_00041 - 169 0.0086 16.2 0.0 2 2 0.00081 1.1 9.4 0.0 5 24 100 119 98 128 0.85 MerR HTH family regulatory protein SL4P PF17618.2 88 AAFJ01000010_00041 - 169 0.026 14.6 1.6 1 2 0.0034 4.7 7.3 0.3 30 45 17 32 9 36 0.87 Uncharacterized Strongylid L4 protein SL4P PF17618.2 88 AAFJ01000010_00041 - 169 0.026 14.6 1.6 2 2 0.01 14 5.8 0.0 40 79 105 143 97 148 0.83 Uncharacterized Strongylid L4 protein Vps4_C PF09336.10 61 AAFJ01000010_00041 - 169 0.036 14.1 0.0 1 2 9e-05 0.12 12.3 0.0 8 42 9 42 4 51 0.83 Vps4 C terminal oligomerisation domain Vps4_C PF09336.10 61 AAFJ01000010_00041 - 169 0.036 14.1 0.0 2 2 3.2 4.5e+03 -2.3 0.0 21 45 135 159 125 163 0.73 Vps4 C terminal oligomerisation domain Phage_terminase PF10668.9 60 AAFJ01000010_00041 - 169 0.054 13.5 0.1 1 2 0.016 23 5.1 0.0 22 44 28 50 8 53 0.84 Phage terminase small subunit Phage_terminase PF10668.9 60 AAFJ01000010_00041 - 169 0.054 13.5 0.1 2 2 0.008 11 6.1 0.0 22 42 95 115 76 121 0.84 Phage terminase small subunit SNase PF00565.17 108 AAFJ01000010_00042 - 197 5.7e-24 84.7 0.4 1 1 1e-27 9.2e-24 84.0 0.4 1 108 90 183 90 183 0.93 Staphylococcal nuclease homologue O-antigen_lig PF13425.6 468 AAFJ01000010_00042 - 197 0.022 13.6 4.2 1 1 3e-06 0.027 13.3 4.2 230 377 6 166 3 180 0.73 O-antigen ligase like membrane protein DUF4065 PF13274.6 114 AAFJ01000010_00043 - 56 0.001 19.9 0.8 1 2 0.64 1.1e+04 -2.8 0.0 64 66 14 16 3 27 0.48 Protein of unknown function (DUF4065) DUF4065 PF13274.6 114 AAFJ01000010_00043 - 56 0.001 19.9 0.8 2 2 7.4e-08 0.0013 19.6 0.5 1 27 30 56 30 56 0.95 Protein of unknown function (DUF4065) N6_N4_Mtase PF01555.18 231 AAFJ01000010_00044 - 788 3.2e-15 56.5 7.5 1 3 3.3e-08 0.00012 21.9 0.0 171 223 20 71 8 76 0.90 DNA methylase N6_N4_Mtase PF01555.18 231 AAFJ01000010_00044 - 788 3.2e-15 56.5 7.5 2 3 0.15 5.3e+02 0.1 0.6 95 116 87 128 81 241 0.62 DNA methylase N6_N4_Mtase PF01555.18 231 AAFJ01000010_00044 - 788 3.2e-15 56.5 7.5 3 3 4.3e-12 1.5e-08 34.6 1.9 1 92 336 449 336 506 0.80 DNA methylase UPF0020 PF01170.18 197 AAFJ01000010_00044 - 788 4.1e-06 26.6 0.0 1 2 0.00011 0.39 10.4 0.0 28 55 39 66 35 154 0.74 Putative RNA methylase family UPF0020 UPF0020 PF01170.18 197 AAFJ01000010_00044 - 788 4.1e-06 26.6 0.0 2 2 1.4e-05 0.051 13.3 0.0 75 132 287 346 254 351 0.80 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 182 AAFJ01000010_00044 - 788 0.0038 16.9 0.0 1 2 0.00014 0.5 10.0 0.0 34 79 28 76 10 145 0.80 Conserved hypothetical protein 95 Cons_hypoth95 PF03602.15 182 AAFJ01000010_00044 - 788 0.0038 16.9 0.0 2 2 0.011 38 3.9 0.0 104 124 326 346 288 356 0.71 Conserved hypothetical protein 95 AviRa PF11599.8 234 AAFJ01000010_00044 - 788 0.021 14.3 0.6 1 3 2.7 9.8e+03 -4.3 0.0 57 65 43 51 37 55 0.82 RRNA methyltransferase AviRa AviRa PF11599.8 234 AAFJ01000010_00044 - 788 0.021 14.3 0.6 2 3 3.4e-05 0.12 11.8 0.0 111 182 284 351 265 355 0.77 RRNA methyltransferase AviRa AviRa PF11599.8 234 AAFJ01000010_00044 - 788 0.021 14.3 0.6 3 3 0.19 6.9e+02 -0.5 0.0 192 218 395 420 385 433 0.71 RRNA methyltransferase AviRa Stork_head PF10264.9 79 AAFJ01000010_00044 - 788 0.049 13.8 0.0 1 1 3.8e-05 0.13 12.4 0.0 9 62 563 616 559 627 0.91 Winged helix Storkhead-box1 domain N6_N4_Mtase PF01555.18 231 AAFJ01000010_00045 - 277 9.5e-26 90.9 0.2 1 2 1.2e-17 2e-14 53.9 0.0 134 230 10 100 1 101 0.82 DNA methylase N6_N4_Mtase PF01555.18 231 AAFJ01000010_00045 - 277 9.5e-26 90.9 0.2 2 2 4.9e-12 8.1e-09 35.5 0.2 1 73 132 238 132 277 0.80 DNA methylase Methyltransf_25 PF13649.6 97 AAFJ01000010_00045 - 277 2.4e-08 34.6 0.0 1 2 1.1e-10 1.7e-07 31.8 0.0 1 77 65 145 65 157 0.84 Methyltransferase domain Methyltransf_25 PF13649.6 97 AAFJ01000010_00045 - 277 2.4e-08 34.6 0.0 2 2 0.79 1.3e+03 0.2 0.0 81 95 191 205 163 206 0.79 Methyltransferase domain Methyltransf_11 PF08241.12 96 AAFJ01000010_00045 - 277 3.1e-08 34.2 0.0 1 2 1.8e-08 2.9e-05 24.6 0.0 1 68 66 138 66 154 0.90 Methyltransferase domain Methyltransf_11 PF08241.12 96 AAFJ01000010_00045 - 277 3.1e-08 34.2 0.0 2 2 0.0033 5.4 7.7 0.0 48 94 162 209 141 211 0.76 Methyltransferase domain Methyltransf_31 PF13847.6 152 AAFJ01000010_00045 - 277 6.3e-08 32.5 0.1 1 1 7.1e-11 1.2e-07 31.7 0.1 2 106 60 208 59 258 0.71 Methyltransferase domain MTS PF05175.14 169 AAFJ01000010_00045 - 277 2.1e-06 27.4 0.0 1 1 2e-09 3.2e-06 26.8 0.0 23 165 54 208 44 212 0.74 Methyltransferase small domain UPF0020 PF01170.18 197 AAFJ01000010_00045 - 277 4.7e-05 23.2 0.1 1 1 1e-06 0.0016 18.1 0.1 32 139 65 149 56 156 0.79 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 165 AAFJ01000010_00045 - 277 0.0002 21.0 0.1 1 2 5.4e-07 0.00089 18.9 0.0 3 81 64 141 62 146 0.90 RNA cap guanine-N2 methyltransferase Methyltransf_15 PF09445.10 165 AAFJ01000010_00045 - 277 0.0002 21.0 0.1 2 2 0.68 1.1e+03 -1.0 0.0 40 69 180 210 172 239 0.75 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 182 AAFJ01000010_00045 - 277 0.0027 17.4 0.0 1 1 3e-06 0.0048 16.6 0.0 42 126 62 144 52 159 0.80 Conserved hypothetical protein 95 N6_Mtase PF02384.16 312 AAFJ01000010_00045 - 277 0.0058 15.9 0.0 1 1 5.9e-06 0.0096 15.2 0.0 36 136 53 142 45 169 0.78 N-6 DNA Methylase Methyltransf_12 PF08242.12 99 AAFJ01000010_00045 - 277 0.024 15.4 0.0 1 2 4.1e-05 0.068 13.9 0.0 1 86 66 152 66 157 0.84 Methyltransferase domain Methyltransf_12 PF08242.12 99 AAFJ01000010_00045 - 277 0.024 15.4 0.0 2 2 3.5 5.7e+03 -1.9 0.0 77 94 187 204 149 206 0.66 Methyltransferase domain Methyltransf_23 PF13489.6 165 AAFJ01000010_00045 - 277 0.027 14.3 0.0 1 1 4.2e-05 0.068 13.0 0.0 12 62 50 120 39 243 0.75 Methyltransferase domain ParE_toxin PF05016.15 90 AAFJ01000010_00047 - 95 3.8e-09 37.0 0.2 1 1 7.8e-13 4.7e-09 36.8 0.2 2 90 6 94 5 94 0.80 ParE toxin of type II toxin-antitoxin system, parDE YafQ_toxin PF15738.5 88 AAFJ01000010_00047 - 95 0.0008 19.7 0.2 1 1 1.7e-07 0.00099 19.4 0.2 1 86 3 93 3 95 0.78 Bacterial toxin of type II toxin-antitoxin system, YafQ IKKbetaNEMObind PF12179.8 37 AAFJ01000010_00047 - 95 0.09 12.8 0.2 1 1 2.7e-05 0.16 12.0 0.2 6 27 22 43 21 46 0.92 I-kappa-kinase-beta NEMO binding domain RHH_5 PF07878.11 43 AAFJ01000010_00048 - 76 0.00016 21.5 0.0 1 1 5.3e-08 0.00024 20.9 0.0 3 35 9 41 7 46 0.93 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 RHH_3 PF12651.7 44 AAFJ01000010_00048 - 76 0.00048 20.0 0.0 1 1 2e-07 0.00088 19.2 0.0 5 39 10 44 8 46 0.92 Ribbon-helix-helix domain HicB_lk_antitox PF15919.5 123 AAFJ01000010_00048 - 76 0.012 15.7 0.0 1 1 4.3e-06 0.019 15.1 0.0 88 122 6 40 2 41 0.94 HicB_like antitoxin of bacterial toxin-antitoxin system CcdA PF07362.12 71 AAFJ01000010_00048 - 76 0.025 15.0 0.1 1 1 7.7e-06 0.034 14.6 0.1 7 60 17 75 12 76 0.81 Post-segregation antitoxin CcdA Bro-N PF02498.17 95 AAFJ01000010_00049 - 281 1.6e-22 80.0 2.7 1 2 5.2e-26 1.9e-22 79.8 0.0 1 95 26 116 26 116 0.85 BRO family, N-terminal domain Bro-N PF02498.17 95 AAFJ01000010_00049 - 281 1.6e-22 80.0 2.7 2 2 0.89 3.2e+03 -1.1 1.4 37 44 179 186 145 237 0.58 BRO family, N-terminal domain HTH_3 PF01381.22 55 AAFJ01000010_00049 - 281 2e-07 31.0 0.1 1 1 1.9e-10 6.7e-07 29.3 0.1 2 55 206 260 205 260 0.97 Helix-turn-helix HTH_19 PF12844.7 65 AAFJ01000010_00049 - 281 4.5e-07 29.8 0.1 1 4 2 7.1e+03 -2.9 0.0 17 33 49 65 42 68 0.69 Helix-turn-helix domain HTH_19 PF12844.7 65 AAFJ01000010_00049 - 281 4.5e-07 29.8 0.1 2 4 0.39 1.4e+03 -0.6 0.0 36 48 97 109 76 131 0.67 Helix-turn-helix domain HTH_19 PF12844.7 65 AAFJ01000010_00049 - 281 4.5e-07 29.8 0.1 3 4 1 3.7e+03 -2.0 0.2 15 27 165 180 154 184 0.55 Helix-turn-helix domain HTH_19 PF12844.7 65 AAFJ01000010_00049 - 281 4.5e-07 29.8 0.1 4 4 1.2e-10 4.5e-07 29.8 0.1 1 64 202 265 202 266 0.94 Helix-turn-helix domain ZapD PF07072.11 210 AAFJ01000010_00049 - 281 0.00027 20.7 3.0 1 2 3.8e-06 0.014 15.2 0.1 17 67 32 82 18 123 0.87 Cell division protein ZapD PF07072.11 210 AAFJ01000010_00049 - 281 0.00027 20.7 3.0 2 2 0.0047 17 5.1 0.6 67 102 144 179 131 184 0.87 Cell division protein HTH_31 PF13560.6 64 AAFJ01000010_00049 - 281 0.0048 17.2 0.0 1 1 2.6e-06 0.0092 16.3 0.0 2 46 201 245 200 260 0.85 Helix-turn-helix domain SLT PF01464.20 117 AAFJ01000010_00050 - 143 3.1e-22 78.4 0.0 1 1 8.1e-26 3.6e-22 78.2 0.0 2 96 18 116 17 134 0.92 Transglycosylase SLT domain Glucosaminidase PF01832.20 87 AAFJ01000010_00050 - 143 0.017 15.6 0.2 1 1 7.8e-06 0.035 14.6 0.2 2 43 17 61 16 136 0.55 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Lys PF00062.20 124 AAFJ01000010_00050 - 143 0.07 13.4 0.1 1 1 3.6e-05 0.16 12.2 0.0 31 62 36 68 27 89 0.82 C-type lysozyme/alpha-lactalbumin family UPF0146 PF03686.13 129 AAFJ01000010_00050 - 143 0.084 12.7 0.0 1 1 2.9e-05 0.13 12.1 0.0 37 73 57 96 45 99 0.79 Uncharacterised protein family (UPF0146) YafQ_toxin PF15738.5 88 AAFJ01000010_00052 - 101 9.3e-26 90.0 0.7 1 1 6e-30 1.1e-25 89.8 0.7 4 88 15 99 12 99 0.97 Bacterial toxin of type II toxin-antitoxin system, YafQ DDE_Tnp_1_7 PF13843.6 350 AAFJ01000010_00053 - 103 0.0083 15.5 1.0 1 1 2e-06 0.009 15.3 1.0 84 128 14 57 12 88 0.89 Transposase IS4 LETM1 PF07766.13 268 AAFJ01000010_00053 - 103 0.009 15.4 4.8 1 1 2.3e-06 0.01 15.2 4.8 91 135 22 73 13 96 0.67 LETM1-like protein Baculo_p24 PF05073.12 182 AAFJ01000010_00053 - 103 0.035 13.9 2.5 1 1 8.5e-06 0.038 13.8 2.5 92 174 13 101 2 103 0.74 Baculovirus P24 capsid protein PIEZO PF15917.5 228 AAFJ01000010_00053 - 103 0.073 12.5 5.7 1 1 1.9e-05 0.084 12.3 5.7 94 151 12 70 8 93 0.70 Piezo Oxidored_q3 PF00499.20 144 AAFJ01000010_00054 - 210 0.0036 17.0 0.2 1 1 8.7e-07 0.0052 16.5 0.2 8 61 132 196 127 210 0.81 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TctA PF01970.16 409 AAFJ01000010_00054 - 210 0.016 14.0 0.6 1 1 3.6e-06 0.022 13.5 0.6 258 376 64 183 42 186 0.73 Tripartite tricarboxylate transporter TctA family Carbpep_Y_N PF05388.11 125 AAFJ01000010_00054 - 210 0.027 15.0 2.7 1 2 4.6e-06 0.027 15.0 0.8 24 106 3 87 1 98 0.76 Carboxypeptidase Y pro-peptide Carbpep_Y_N PF05388.11 125 AAFJ01000010_00054 - 210 0.027 15.0 2.7 2 2 0.26 1.6e+03 -0.4 0.1 43 65 102 124 86 140 0.58 Carboxypeptidase Y pro-peptide Bacillus_PapR PF05968.11 45 AAFJ01000010_00055 - 93 0.022 14.6 0.1 1 1 5.4e-06 0.048 13.5 0.1 1 30 1 34 1 37 0.85 Bacillus PapR protein YtpI PF14007.6 87 AAFJ01000010_00055 - 93 0.024 14.8 9.1 1 3 0.0029 26 5.1 0.3 36 58 5 27 2 28 0.88 YtpI-like protein YtpI PF14007.6 87 AAFJ01000010_00055 - 93 0.024 14.8 9.1 2 3 4.3e-06 0.038 14.1 0.1 49 76 36 63 33 67 0.90 YtpI-like protein YtpI PF14007.6 87 AAFJ01000010_00055 - 93 0.024 14.8 9.1 3 3 0.059 5.3e+02 0.8 0.7 42 52 65 75 61 90 0.52 YtpI-like protein TraL PF07178.11 90 AAFJ01000010_00056 - 101 3.1e-13 50.0 0.5 1 1 2e-17 3.6e-13 49.8 0.5 2 89 10 98 9 99 0.87 TraL protein TraE PF05309.11 182 AAFJ01000010_00057 - 197 1e-32 113.0 0.8 1 1 7.1e-37 1.3e-32 112.7 0.8 1 180 1 180 1 181 0.97 TraE protein TraK PF06586.11 231 AAFJ01000010_00058 - 260 8.9e-23 81.2 0.2 1 1 1.4e-26 2.6e-22 79.7 0.2 5 215 6 230 3 236 0.88 TraK protein TrbI PF03743.14 187 AAFJ01000010_00059 - 436 4.8e-35 121.1 1.5 1 1 1.3e-38 8e-35 120.4 1.5 2 186 213 415 212 416 0.93 Bacterial conjugation TrbI-like protein Cep57_CLD PF14073.6 178 AAFJ01000010_00059 - 436 0.0019 18.2 4.7 1 2 3.2e-07 0.0019 18.2 4.7 40 138 58 157 43 173 0.76 Centrosome localisation domain of Cep57 Cep57_CLD PF14073.6 178 AAFJ01000010_00059 - 436 0.0019 18.2 4.7 2 2 0.72 4.3e+03 -2.4 0.4 39 48 418 427 401 435 0.38 Centrosome localisation domain of Cep57 O-antigen_lig PF13425.6 468 AAFJ01000010_00059 - 436 0.08 11.7 8.5 1 1 2.2e-05 0.13 11.0 8.5 234 351 14 147 6 153 0.71 O-antigen ligase like membrane protein Thioredoxin_2 PF13098.6 109 AAFJ01000010_00060 - 248 1.4e-15 57.6 0.2 1 2 1.8 6.5e+03 -2.4 0.0 92 107 28 43 22 44 0.75 Thioredoxin-like domain Thioredoxin_2 PF13098.6 109 AAFJ01000010_00060 - 248 1.4e-15 57.6 0.2 2 2 9.8e-19 3.5e-15 56.4 0.1 2 99 121 240 120 247 0.95 Thioredoxin-like domain DsbC_N PF10411.9 54 AAFJ01000010_00060 - 248 8.2e-10 38.0 0.1 1 1 4.1e-13 1.5e-09 37.2 0.1 2 50 30 79 29 82 0.94 Disulfide bond isomerase protein N-terminus Thioredoxin_4 PF13462.6 166 AAFJ01000010_00060 - 248 0.0014 18.8 4.8 1 2 0.00011 0.39 10.9 0.3 17 35 128 146 120 157 0.83 Thioredoxin Thioredoxin_4 PF13462.6 166 AAFJ01000010_00060 - 248 0.0014 18.8 4.8 2 2 0.00022 0.8 9.8 0.5 88 164 162 246 148 247 0.60 Thioredoxin Glutaredoxin PF00462.24 60 AAFJ01000010_00060 - 248 0.0033 17.6 0.1 1 2 2.8e-06 0.01 16.1 0.0 2 44 129 173 128 186 0.81 Glutaredoxin Glutaredoxin PF00462.24 60 AAFJ01000010_00060 - 248 0.0033 17.6 0.1 2 2 1.2 4.3e+03 -2.0 0.0 39 55 209 225 191 228 0.63 Glutaredoxin TraF PF13728.6 224 AAFJ01000010_00060 - 248 0.086 12.7 0.1 1 2 0.01 37 4.0 0.0 126 147 121 142 100 148 0.87 F plasmid transfer operon protein TraF PF13728.6 224 AAFJ01000010_00060 - 248 0.086 12.7 0.1 2 2 0.0017 6 6.6 0.0 181 212 208 239 184 247 0.76 F plasmid transfer operon protein SH3_3 PF08239.11 55 AAFJ01000010_00061 - 303 6.2e-06 26.4 0.0 1 1 2.3e-09 1.4e-05 25.3 0.0 3 50 255 296 253 300 0.90 Bacterial SH3 domain TraV PF09676.10 132 AAFJ01000010_00061 - 303 0.00078 20.4 1.2 1 2 1.3e-07 0.00078 20.4 1.2 1 61 27 86 27 107 0.68 Type IV conjugative transfer system lipoprotein (TraV) TraV PF09676.10 132 AAFJ01000010_00061 - 303 0.00078 20.4 1.2 2 2 1.5 9.1e+03 -2.4 9.4 20 61 143 176 116 246 0.61 Type IV conjugative transfer system lipoprotein (TraV) DUF3410 PF11890.8 81 AAFJ01000010_00061 - 303 0.083 12.7 0.0 1 1 3.6e-05 0.21 11.4 0.0 25 45 43 63 30 76 0.82 Domain of unknown function (DUF3410) SH3_3 PF08239.11 55 AAFJ01000010_00062 - 160 0.00054 20.2 0.1 1 1 1.6e-07 0.00093 19.4 0.1 4 39 106 143 103 152 0.84 Bacterial SH3 domain PBP_dimer PF03717.15 180 AAFJ01000010_00062 - 160 0.027 14.8 0.7 1 1 5.9e-06 0.035 14.4 0.7 42 126 34 124 13 143 0.80 Penicillin-binding Protein dimerisation domain Closter_coat PF01785.17 189 AAFJ01000010_00062 - 160 0.064 12.5 0.2 1 1 1.5e-05 0.088 12.1 0.2 12 99 22 113 18 115 0.84 Closterovirus coat protein TraC_F_IV PF11130.8 238 AAFJ01000010_00064 - 837 5.7e-32 111.2 0.0 1 2 1.2e-34 2.1e-31 109.4 0.0 2 223 37 246 36 258 0.94 F pilus assembly Type-IV secretion system for plasmid transfer TraC_F_IV PF11130.8 238 AAFJ01000010_00064 - 837 5.7e-32 111.2 0.0 2 2 1.2 2.2e+03 -2.0 0.0 66 136 744 811 738 832 0.64 F pilus assembly Type-IV secretion system for plasmid transfer AAA_10 PF12846.7 362 AAFJ01000010_00064 - 837 1.6e-10 40.5 0.2 1 1 5.2e-13 9.3e-10 38.0 0.2 19 292 457 722 446 772 0.73 AAA-like domain TrwB_AAD_bind PF10412.9 386 AAFJ01000010_00064 - 837 5.1e-08 32.2 0.0 1 2 2.5e-06 0.0045 15.9 0.0 2 127 446 573 445 605 0.75 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 AAFJ01000010_00064 - 837 5.1e-08 32.2 0.0 2 2 9.7e-06 0.017 14.0 0.0 226 288 652 719 640 796 0.68 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 137 AAFJ01000010_00064 - 837 0.0013 19.1 0.4 1 3 5.9 1.1e+04 -3.4 0.0 110 136 83 107 78 108 0.77 AAA domain AAA_22 PF13401.6 137 AAFJ01000010_00064 - 837 0.0013 19.1 0.4 2 3 0.0032 5.8 7.2 0.0 6 26 460 480 456 586 0.84 AAA domain AAA_22 PF13401.6 137 AAFJ01000010_00064 - 837 0.0013 19.1 0.4 3 3 0.0013 2.3 8.5 0.0 86 128 661 709 593 715 0.80 AAA domain ResIII PF04851.15 171 AAFJ01000010_00064 - 837 0.0024 17.9 2.1 1 2 1.4 2.6e+03 -1.7 0.1 63 85 123 149 121 190 0.62 Type III restriction enzyme, res subunit ResIII PF04851.15 171 AAFJ01000010_00064 - 837 0.0024 17.9 2.1 2 2 3.2e-05 0.057 13.4 0.2 20 151 455 689 442 706 0.57 Type III restriction enzyme, res subunit CbiA PF01656.23 128 AAFJ01000010_00064 - 837 0.0056 16.7 0.0 1 1 8.4e-06 0.015 15.3 0.0 7 104 467 574 464 597 0.77 CobQ/CobB/MinD/ParA nucleotide binding domain Zot PF05707.12 194 AAFJ01000010_00064 - 837 0.014 15.1 0.0 1 2 3.5 6.3e+03 -3.4 0.0 65 99 107 144 78 155 0.65 Zonular occludens toxin (Zot) Zot PF05707.12 194 AAFJ01000010_00064 - 837 0.014 15.1 0.0 2 2 2.2e-05 0.039 13.6 0.0 84 131 673 717 657 745 0.87 Zonular occludens toxin (Zot) TraG-D_C PF12696.7 126 AAFJ01000010_00064 - 837 0.017 15.1 0.0 1 1 2.9e-05 0.052 13.5 0.0 5 69 674 746 670 787 0.77 TraM recognition site of TraD and TraG RsgA_GTPase PF03193.16 167 AAFJ01000010_00064 - 837 0.056 13.3 0.0 1 1 7.2e-05 0.13 12.2 0.0 67 122 427 482 410 491 0.84 RsgA GTPase DUF1639 PF07797.14 50 AAFJ01000010_00064 - 837 0.073 13.1 0.1 1 2 0.0026 4.7 7.3 0.0 11 32 286 306 283 316 0.78 Protein of unknown function (DUF1639) DUF1639 PF07797.14 50 AAFJ01000010_00064 - 837 0.073 13.1 0.1 2 2 0.065 1.2e+02 2.8 0.0 13 36 546 570 543 572 0.78 Protein of unknown function (DUF1639) TrbI_Ftype PF09677.10 106 AAFJ01000010_00065 - 109 0.028 14.7 0.0 1 1 1.7e-06 0.031 14.6 0.0 13 99 15 104 4 109 0.77 Type-F conjugative transfer system protein (TrbI_Ftype) Peptidase_S26 PF10502.9 138 AAFJ01000010_00066 - 168 1.6e-15 57.1 0.0 1 1 1.2e-19 2.2e-15 56.6 0.0 2 133 40 166 39 167 0.96 Signal peptidase, peptidase S26 TraH PF06122.11 361 AAFJ01000010_00067 - 468 5.3e-64 216.8 0.3 1 2 3e-68 5.3e-64 216.8 0.3 2 360 22 384 21 385 0.86 Conjugative relaxosome accessory transposon protein TraH PF06122.11 361 AAFJ01000010_00067 - 468 5.3e-64 216.8 0.3 2 2 0.08 1.4e+03 -1.8 0.4 156 206 391 448 388 460 0.49 Conjugative relaxosome accessory transposon protein SAYSvFN PF10260.9 70 AAFJ01000010_00068 - 394 0.046 13.6 0.2 1 1 6.7e-06 0.12 12.3 0.2 37 60 233 256 226 265 0.78 Uncharacterized conserved domain (SAYSvFN) TraN PF06986.11 240 AAFJ01000010_00069 - 722 3.3e-26 92.5 26.5 1 2 0.25 1.5e+03 -1.3 0.3 64 127 243 310 219 332 0.55 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 AAFJ01000010_00069 - 722 3.3e-26 92.5 26.5 2 2 1.5e-28 9.2e-25 87.7 20.4 56 239 498 669 476 670 0.70 Type-1V conjugative transfer system mating pair stabilisation Lectin_C PF00059.21 108 AAFJ01000010_00069 - 722 1.8e-05 25.4 0.0 1 2 3.1e-09 1.8e-05 25.4 0.0 2 58 59 114 58 146 0.89 Lectin C-type domain Lectin_C PF00059.21 108 AAFJ01000010_00069 - 722 1.8e-05 25.4 0.0 2 2 3 1.8e+04 -4.5 1.9 77 105 604 635 592 637 0.61 Lectin C-type domain Xol-1_GHMP-like PF09109.10 189 AAFJ01000010_00069 - 722 0.035 14.0 0.0 1 1 1.2e-05 0.073 12.9 0.0 91 143 250 310 233 338 0.77 Switch protein XOL-1, GHMP-like TraF PF13728.6 224 AAFJ01000010_00070 - 250 3.2e-18 66.4 7.8 1 1 5.2e-22 4.7e-18 65.8 7.8 1 171 26 193 26 237 0.84 F plasmid transfer operon protein PUA_2 PF14306.6 159 AAFJ01000010_00070 - 250 0.015 15.0 0.3 1 1 3.1e-06 0.028 14.1 0.3 74 139 52 120 29 149 0.79 PUA-like domain TraG_N PF07916.11 467 AAFJ01000010_00071 - 886 3.7e-55 187.6 16.8 1 2 2.1e-59 3.7e-55 187.6 16.8 1 466 24 476 24 477 0.90 TraG-like protein, N-terminal region TraG_N PF07916.11 467 AAFJ01000010_00071 - 886 3.7e-55 187.6 16.8 2 2 0.28 4.9e+03 -4.0 2.6 221 295 666 739 629 770 0.50 TraG-like protein, N-terminal region Wzy_C PF04932.15 155 AAFJ01000010_00073 - 101 0.086 12.5 0.1 1 1 5.4e-06 0.096 12.3 0.1 41 80 9 82 3 100 0.77 O-Antigen ligase PFO_beta_C PF12367.8 66 AAFJ01000010_00075 - 285 0.064 13.4 1.6 1 2 1e-05 0.093 12.9 0.2 9 62 126 184 123 188 0.82 Pyruvate ferredoxin oxidoreductase beta subunit C terminal PFO_beta_C PF12367.8 66 AAFJ01000010_00075 - 285 0.064 13.4 1.6 2 2 0.52 4.6e+03 -2.2 0.1 46 57 253 264 242 269 0.81 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Phage_Treg PF04761.12 57 AAFJ01000010_00075 - 285 0.085 13.0 1.7 1 3 1 9.2e+03 -3.2 0.0 41 54 44 57 42 58 0.68 Lactococcus bacteriophage putative transcription regulator Phage_Treg PF04761.12 57 AAFJ01000010_00075 - 285 0.085 13.0 1.7 2 3 0.17 1.5e+03 -0.7 0.1 18 26 126 134 111 146 0.70 Lactococcus bacteriophage putative transcription regulator Phage_Treg PF04761.12 57 AAFJ01000010_00075 - 285 0.085 13.0 1.7 3 3 3.7e-05 0.33 11.1 0.0 8 48 165 200 160 208 0.77 Lactococcus bacteriophage putative transcription regulator AAA_25 PF13481.6 194 AAFJ01000010_00076 - 237 1.7e-18 66.9 0.0 1 1 6.1e-22 2.2e-18 66.5 0.0 31 193 28 183 9 184 0.86 AAA domain PhoH PF02562.16 205 AAFJ01000010_00076 - 237 0.00097 18.6 0.0 1 1 4.9e-07 0.0017 17.8 0.0 18 52 29 63 12 66 0.86 PhoH-like protein DnaB_C PF03796.15 255 AAFJ01000010_00076 - 237 0.0021 17.5 0.0 1 1 7.6e-07 0.0027 17.1 0.0 15 109 26 116 15 157 0.77 DnaB-like helicase C terminal domain ATPase PF06745.13 231 AAFJ01000010_00076 - 237 0.041 13.2 0.0 1 1 1.4e-05 0.049 13.0 0.0 16 76 27 88 19 215 0.67 KaiC IstB_IS21 PF01695.17 178 AAFJ01000010_00076 - 237 0.045 13.5 0.0 1 2 3.6e-05 0.13 12.0 0.0 30 79 11 64 3 93 0.73 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 AAFJ01000010_00076 - 237 0.045 13.5 0.0 2 2 0.83 3e+03 -2.2 0.0 101 117 125 141 117 169 0.63 IstB-like ATP binding protein HTH_3 PF01381.22 55 AAFJ01000010_00077 - 117 1.2e-06 28.5 0.0 1 1 3.1e-10 1.9e-06 27.8 0.0 1 46 10 55 10 60 0.94 Helix-turn-helix HTH_19 PF12844.7 65 AAFJ01000010_00077 - 117 1.2e-05 25.2 0.7 1 2 2.8e-09 1.7e-05 24.8 0.0 2 63 8 69 7 71 0.90 Helix-turn-helix domain HTH_19 PF12844.7 65 AAFJ01000010_00077 - 117 1.2e-05 25.2 0.7 2 2 2.6 1.5e+04 -3.9 0.1 3 8 107 112 105 113 0.62 Helix-turn-helix domain TACC_C PF05010.14 201 AAFJ01000010_00077 - 117 0.013 15.2 0.1 1 1 2.7e-06 0.016 15.0 0.1 13 104 13 114 4 117 0.73 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Toprim_3 PF13362.6 95 AAFJ01000010_00078 - 376 5.2e-09 36.3 0.0 1 1 9.2e-13 8.2e-09 35.7 0.0 3 94 264 365 262 366 0.83 Toprim domain Toprim_4 PF13662.6 89 AAFJ01000010_00078 - 376 0.017 15.6 0.1 1 1 3.9e-06 0.035 14.6 0.1 2 80 262 336 261 341 0.89 Toprim domain AAA_25 PF13481.6 194 AAFJ01000010_00079 - 597 1e-15 57.8 0.0 1 1 5.7e-19 2e-15 56.9 0.0 30 193 30 175 18 176 0.85 AAA domain DnaB_C PF03796.15 255 AAFJ01000010_00079 - 597 0.0004 19.8 0.0 1 2 1.1e-06 0.0041 16.5 0.0 15 109 29 128 21 136 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 AAFJ01000010_00079 - 597 0.0004 19.8 0.0 2 2 0.0072 26 4.0 0.0 111 183 102 176 90 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 AAFJ01000010_00079 - 597 0.0014 18.3 0.0 1 2 5.1e-06 0.018 14.7 0.0 46 87 32 73 19 86 0.87 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 AAFJ01000010_00079 - 597 0.0014 18.3 0.0 2 2 0.15 5.3e+02 0.2 0.0 97 118 109 130 97 169 0.73 IstB-like ATP binding protein ATPase PF06745.13 231 AAFJ01000010_00079 - 597 0.013 14.8 0.0 1 2 1.4e-05 0.049 13.0 0.0 16 71 30 84 24 214 0.87 KaiC ATPase PF06745.13 231 AAFJ01000010_00079 - 597 0.013 14.8 0.0 2 2 0.85 3e+03 -2.7 0.0 137 160 329 352 322 356 0.83 KaiC AAA PF00004.29 132 AAFJ01000010_00079 - 597 0.07 13.6 0.1 1 2 0.00025 0.91 10.0 0.0 2 105 37 166 36 177 0.64 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 AAFJ01000010_00079 - 597 0.07 13.6 0.1 2 2 0.3 1.1e+03 0.0 0.0 55 74 417 434 380 456 0.77 ATPase family associated with various cellular activities (AAA) SseC PF04888.12 317 AAFJ01000010_00080 - 136 0.0012 18.6 1.4 1 2 1.3e-07 0.0012 18.6 1.4 27 77 8 57 6 60 0.94 Secretion system effector C (SseC) like family SseC PF04888.12 317 AAFJ01000010_00080 - 136 0.0012 18.6 1.4 2 2 0.84 7.5e+03 -3.8 4.1 58 70 95 107 93 110 0.75 Secretion system effector C (SseC) like family Leu_Phe_trans PF03588.14 169 AAFJ01000010_00080 - 136 0.034 13.7 0.1 1 1 5.4e-06 0.048 13.2 0.1 76 120 5 48 1 54 0.91 Leucyl/phenylalanyl-tRNA protein transferase Resolvase PF00239.21 146 AAFJ01000010_00081 - 205 9.9e-36 123.0 0.2 1 1 1.6e-39 1.4e-35 122.5 0.2 2 145 3 144 2 145 0.94 Resolvase, N terminal domain Mga PF05043.13 87 AAFJ01000010_00081 - 205 0.012 16.1 2.2 1 2 1.6e-05 0.15 12.7 0.6 16 65 17 66 6 75 0.86 Mga helix-turn-helix domain Mga PF05043.13 87 AAFJ01000010_00081 - 205 0.012 16.1 2.2 2 2 0.034 3e+02 2.1 0.0 43 83 152 191 150 194 0.82 Mga helix-turn-helix domain TrbC PF04956.13 99 AAFJ01000010_00082 - 87 4.8e-15 55.6 8.1 1 1 3.1e-19 5.6e-15 55.4 8.1 19 99 5 85 2 85 0.95 TrbC/VIRB2 family CagE_TrbE_VirB PF03135.14 206 AAFJ01000010_00083 - 923 2.5e-43 148.6 0.5 1 1 6.9e-47 6.2e-43 147.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 AAFJ01000010_00083 - 923 1.2e-19 70.3 2.0 1 1 2.4e-23 2.1e-19 69.5 2.0 3 83 4 84 2 85 0.95 Type IV secretory pathway, VirB3-like protein Phage_pRha PF09669.10 88 AAFJ01000010_00084 - 206 2.7e-29 101.5 0.0 1 1 2.5e-33 4.5e-29 100.8 0.0 2 88 26 124 25 124 0.89 Phage regulatory protein Rha (Phage_pRha) T4SS PF07996.11 197 AAFJ01000010_00085 - 245 2.3e-23 83.6 16.9 1 1 6.3e-27 2.8e-23 83.4 16.9 1 195 21 225 21 227 0.91 Type IV secretion system proteins CHASE4 PF05228.13 137 AAFJ01000010_00085 - 245 0.05 13.8 5.7 1 3 0.0052 23 5.2 0.6 4 36 36 68 35 71 0.89 CHASE4 domain CHASE4 PF05228.13 137 AAFJ01000010_00085 - 245 0.05 13.8 5.7 2 3 0.00023 1 9.6 0.2 2 58 75 138 74 175 0.79 CHASE4 domain CHASE4 PF05228.13 137 AAFJ01000010_00085 - 245 0.05 13.8 5.7 3 3 0.21 9.4e+02 -0.0 0.0 92 122 147 178 138 192 0.86 CHASE4 domain KMP11 PF03037.16 90 AAFJ01000010_00085 - 245 0.074 13.8 2.3 1 4 7e-05 0.31 11.8 0.0 8 54 18 64 12 92 0.85 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 AAFJ01000010_00085 - 245 0.074 13.8 2.3 2 4 0.42 1.9e+03 -0.3 0.1 24 49 100 123 81 145 0.57 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 AAFJ01000010_00085 - 245 0.074 13.8 2.3 3 4 0.54 2.4e+03 -0.6 0.2 51 51 167 167 115 209 0.59 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 AAFJ01000010_00085 - 245 0.074 13.8 2.3 4 4 0.58 2.6e+03 -0.7 0.2 12 12 201 201 156 238 0.59 Kinetoplastid membrane protein 11 AChE_tetra PF08674.10 37 AAFJ01000010_00085 - 245 0.099 12.4 1.2 1 2 0.00011 0.5 10.1 0.1 6 29 43 66 41 72 0.92 Acetylcholinesterase tetramerisation domain AChE_tetra PF08674.10 37 AAFJ01000010_00085 - 245 0.099 12.4 1.2 2 2 0.11 4.9e+02 0.5 0.1 15 35 123 143 121 145 0.88 Acetylcholinesterase tetramerisation domain TrbL PF04610.14 215 AAFJ01000010_00086 - 331 5.9e-33 114.4 25.5 1 1 4.5e-37 8.1e-33 114.0 25.5 1 212 40 245 40 279 0.91 TrbL/VirB6 plasmid conjugal transfer protein VirB8 PF04335.13 214 AAFJ01000010_00089 - 219 8.4e-50 169.6 0.1 1 1 5.7e-54 1e-49 169.3 0.1 5 214 10 216 7 216 0.92 VirB8 protein CagX PF03524.15 211 AAFJ01000010_00090 - 316 2.3e-53 181.1 0.8 1 1 2.5e-57 4.6e-53 180.1 0.8 2 211 29 270 28 270 0.92 Conjugal transfer protein TrbI PF03743.14 187 AAFJ01000010_00091 - 382 1.3e-46 158.8 0.1 1 2 0.19 3.5e+03 -2.4 0.3 119 154 120 160 111 164 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 AAFJ01000010_00091 - 382 1.3e-46 158.8 0.1 2 2 7.4e-51 1.3e-46 158.8 0.1 1 187 191 372 191 372 0.98 Bacterial conjugation TrbI-like protein T2SSE PF00437.20 273 AAFJ01000010_00093 - 329 5.1e-54 183.2 0.0 1 1 1.1e-56 6.4e-54 182.8 0.0 6 269 14 311 9 314 0.94 Type II/IV secretion system protein AAA_22 PF13401.6 137 AAFJ01000010_00093 - 329 4.9e-05 23.6 0.0 1 1 1.6e-07 9.4e-05 22.7 0.0 7 57 162 222 159 251 0.82 AAA domain ABC_tran PF00005.27 137 AAFJ01000010_00093 - 329 0.00012 22.6 0.0 1 1 5e-07 0.00029 21.4 0.0 8 51 157 201 150 229 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 AAFJ01000010_00093 - 329 0.00021 20.7 0.0 1 1 5.9e-07 0.00034 20.0 0.0 28 60 146 181 125 183 0.79 FtsK/SpoIIIE family AAA_7 PF12775.7 181 AAFJ01000010_00093 - 329 0.00062 19.3 0.0 1 1 1.8e-06 0.0011 18.6 0.0 19 58 146 185 130 196 0.85 P-loop containing dynein motor region AAA_23 PF13476.6 200 AAFJ01000010_00093 - 329 0.0028 18.2 1.3 1 2 3.9 2.3e+03 -1.1 0.2 154 156 124 126 42 151 0.51 AAA domain AAA_23 PF13476.6 200 AAFJ01000010_00093 - 329 0.0028 18.2 1.3 2 2 4.9e-06 0.0028 18.2 1.3 5 38 147 179 145 182 0.84 AAA domain TsaE PF02367.17 125 AAFJ01000010_00093 - 329 0.003 17.5 0.0 1 1 1.1e-05 0.0064 16.5 0.0 11 45 150 186 142 194 0.77 Threonylcarbamoyl adenosine biosynthesis protein TsaE Pox_A32 PF04665.12 242 AAFJ01000010_00093 - 329 0.003 17.0 0.0 1 1 8.4e-06 0.0048 16.4 0.0 15 36 162 183 145 209 0.85 Poxvirus A32 protein AAA_15 PF13175.6 369 AAFJ01000010_00093 - 329 0.0035 17.1 2.5 1 2 0.2 1.1e+02 2.3 1.2 184 217 74 139 2 147 0.50 AAA ATPase domain AAA_15 PF13175.6 369 AAFJ01000010_00093 - 329 0.0035 17.1 2.5 2 2 6.1e-06 0.0035 17.1 2.5 9 54 147 191 145 224 0.78 AAA ATPase domain AAA_24 PF13479.6 197 AAFJ01000010_00093 - 329 0.0041 16.9 0.0 1 1 1.2e-05 0.0069 16.1 0.0 3 32 161 187 160 229 0.74 AAA domain Septin PF00735.18 281 AAFJ01000010_00093 - 329 0.0043 16.4 0.0 1 1 1.2e-05 0.0072 15.6 0.0 5 33 161 189 157 209 0.78 Septin RNA_helicase PF00910.22 107 AAFJ01000010_00093 - 329 0.012 16.0 0.0 1 1 7.4e-05 0.043 14.2 0.0 1 21 163 183 163 223 0.85 RNA helicase ATPase_2 PF01637.18 233 AAFJ01000010_00093 - 329 0.013 15.4 0.0 1 1 3.6e-05 0.021 14.8 0.0 23 82 163 226 150 281 0.86 ATPase domain predominantly from Archaea NACHT PF05729.12 166 AAFJ01000010_00093 - 329 0.015 15.2 0.0 1 1 4.4e-05 0.025 14.5 0.0 3 22 163 182 161 185 0.91 NACHT domain AAA_29 PF13555.6 61 AAFJ01000010_00093 - 329 0.015 15.0 0.0 1 1 6e-05 0.035 13.9 0.0 8 39 148 177 139 183 0.74 P-loop containing region of AAA domain DUF87 PF01935.17 227 AAFJ01000010_00093 - 329 0.015 15.4 1.0 1 2 2.4 1.4e+03 -0.8 0.1 152 187 105 138 37 158 0.65 Helicase HerA, central domain DUF87 PF01935.17 227 AAFJ01000010_00093 - 329 0.015 15.4 1.0 2 2 5.1e-05 0.03 14.4 0.2 24 45 161 182 138 193 0.82 Helicase HerA, central domain DUF815 PF05673.13 250 AAFJ01000010_00093 - 329 0.021 14.0 0.0 1 1 5.4e-05 0.031 13.4 0.0 11 76 117 183 107 209 0.79 Protein of unknown function (DUF815) DEAD PF00270.29 176 AAFJ01000010_00093 - 329 0.021 14.6 0.0 1 1 5.2e-05 0.03 14.1 0.0 11 32 157 177 144 283 0.83 DEAD/DEAH box helicase Mg_chelatase PF01078.21 207 AAFJ01000010_00093 - 329 0.023 14.1 0.0 1 2 1.9 1.1e+03 -1.2 0.0 40 59 84 103 81 125 0.82 Magnesium chelatase, subunit ChlI Mg_chelatase PF01078.21 207 AAFJ01000010_00093 - 329 0.023 14.1 0.0 2 2 0.00018 0.1 11.9 0.0 7 49 145 187 139 227 0.82 Magnesium chelatase, subunit ChlI ATP_bind_1 PF03029.17 241 AAFJ01000010_00093 - 329 0.027 14.3 0.0 1 1 8.5e-05 0.049 13.4 0.0 1 23 165 187 165 193 0.86 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 167 AAFJ01000010_00093 - 329 0.045 13.7 0.0 1 1 0.00012 0.072 13.0 0.0 64 121 127 182 110 199 0.67 RsgA GTPase TrwB_AAD_bind PF10412.9 386 AAFJ01000010_00093 - 329 0.046 12.6 0.0 1 1 0.00014 0.079 11.8 0.0 17 45 162 190 156 221 0.78 Type IV secretion-system coupling protein DNA-binding domain Dynamin_N PF00350.23 168 AAFJ01000010_00093 - 329 0.051 13.6 0.0 1 2 1.1 6.2e+02 0.3 0.0 21 53 84 115 25 156 0.64 Dynamin family Dynamin_N PF00350.23 168 AAFJ01000010_00093 - 329 0.051 13.6 0.0 2 2 0.00068 0.4 10.7 0.0 1 32 163 192 163 221 0.88 Dynamin family ResIII PF04851.15 171 AAFJ01000010_00093 - 329 0.055 13.5 0.1 1 1 0.00021 0.12 12.4 0.1 5 46 142 182 137 224 0.87 Type III restriction enzyme, res subunit SMC_N PF02463.19 220 AAFJ01000010_00093 - 329 0.063 12.7 0.1 1 1 0.0002 0.12 11.8 0.1 7 44 146 180 137 206 0.76 RecF/RecN/SMC N terminal domain PduV-EutP PF10662.9 143 AAFJ01000010_00093 - 329 0.07 12.9 0.0 1 2 0.0012 0.7 9.6 0.0 2 22 161 181 160 204 0.88 Ethanolamine utilisation - propanediol utilisation PduV-EutP PF10662.9 143 AAFJ01000010_00093 - 329 0.07 12.9 0.0 2 2 0.77 4.4e+02 0.5 0.0 76 109 288 321 275 326 0.80 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 130 AAFJ01000010_00093 - 329 0.073 13.6 0.0 1 1 0.00025 0.14 12.7 0.0 1 93 163 278 163 292 0.56 AAA domain PRK PF00485.18 197 AAFJ01000010_00093 - 329 0.089 12.5 0.0 1 1 0.00028 0.16 11.7 0.0 2 37 163 197 162 224 0.68 Phosphoribulokinase / Uridine kinase family MobB PF03205.14 133 AAFJ01000010_00093 - 329 0.09 12.7 0.0 1 1 0.00033 0.19 11.6 0.0 2 22 163 183 162 199 0.88 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.6 131 AAFJ01000010_00093 - 329 0.091 12.8 0.3 1 1 0.00036 0.21 11.6 0.0 3 50 161 208 160 241 0.76 AAA domain GvpD PF07088.11 484 AAFJ01000010_00093 - 329 0.093 11.3 0.0 1 1 0.00021 0.12 11.0 0.0 8 43 158 193 150 260 0.74 GvpD gas vesicle protein YscJ_FliF PF01514.17 194 AAFJ01000010_00094 - 240 0.019 14.7 2.6 1 2 3.4e-05 0.31 10.7 0.1 26 64 47 85 39 109 0.85 Secretory protein of YscJ/FliF family YscJ_FliF PF01514.17 194 AAFJ01000010_00094 - 240 0.019 14.7 2.6 2 2 0.0049 44 3.6 0.3 155 179 203 227 189 235 0.84 Secretory protein of YscJ/FliF family Njmu-R1 PF15053.6 353 AAFJ01000010_00094 - 240 0.028 13.5 1.6 1 1 5.7e-06 0.051 12.7 1.6 121 227 3 109 1 128 0.78 Mjmu-R1-like protein family T4SS-DNA_transf PF02534.14 469 AAFJ01000010_00095 - 606 1.3e-109 367.1 0.0 1 1 2.9e-113 1.8e-109 366.7 0.0 2 461 93 572 82 578 0.86 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 AAFJ01000010_00095 - 606 6.2e-27 94.1 0.0 1 1 1.8e-30 1.1e-26 93.3 0.0 2 125 414 535 413 536 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 AAFJ01000010_00095 - 606 1.4e-18 67.0 0.0 1 2 9.7e-07 0.0058 15.6 0.0 44 127 158 253 132 272 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 AAFJ01000010_00095 - 606 1.4e-18 67.0 0.0 2 2 5.5e-17 3.3e-13 49.3 0.0 158 369 322 538 301 550 0.78 Type IV secretion-system coupling protein DNA-binding domain Cag12 PF13117.6 97 AAFJ01000010_00096 - 136 1.1e-16 61.2 0.1 1 1 1.6e-20 1.4e-16 60.7 0.1 6 94 29 115 25 118 0.92 Cag pathogenicity island protein Cag12 LPAM_2 PF13627.6 23 AAFJ01000010_00096 - 136 0.027 14.3 3.2 1 1 4.9e-06 0.044 13.6 3.2 2 19 7 24 6 24 0.90 Prokaryotic lipoprotein-attachment site TrbM PF07424.11 156 AAFJ01000010_00097 - 197 6.3e-39 133.4 1.3 1 1 4.5e-43 8e-39 133.1 1.3 2 148 23 181 22 190 0.87 TrbM Latarcin PF10279.9 81 AAFJ01000010_00098 - 296 0.016 15.6 1.6 1 1 0.00011 0.66 10.4 1.6 22 76 56 184 14 189 0.78 Latarcin precursor Lipase_GDSL PF00657.22 200 AAFJ01000010_00098 - 296 0.033 14.2 1.1 1 1 1.1e-05 0.067 13.2 0.9 48 131 27 170 15 219 0.75 GDSL-like Lipase/Acylhydrolase T3SS_basalb_I PF17001.5 96 AAFJ01000010_00098 - 296 0.078 13.6 4.2 1 2 0.00029 1.7 9.3 0.5 3 62 20 91 18 107 0.70 Type III secretion basal body protein I, YscI, HrpB, PscI T3SS_basalb_I PF17001.5 96 AAFJ01000010_00098 - 296 0.078 13.6 4.2 2 2 0.0073 44 4.8 0.1 2 43 158 208 157 219 0.55 Type III secretion basal body protein I, YscI, HrpB, PscI Topoisom_bac PF01131.20 413 AAFJ01000010_00100 - 723 4.4e-96 322.4 2.6 1 1 2.5e-99 5.6e-96 322.1 2.6 3 413 154 591 152 591 0.93 DNA topoisomerase Toprim PF01751.22 103 AAFJ01000010_00100 - 723 8.4e-12 45.2 0.4 1 2 1.5e-14 3.4e-11 43.3 0.1 1 101 2 134 2 136 0.86 Toprim domain Toprim PF01751.22 103 AAFJ01000010_00100 - 723 8.4e-12 45.2 0.4 2 2 2.9 6.6e+03 -2.6 0.0 61 77 497 513 465 516 0.67 Toprim domain zf-C4_Topoisom PF01396.19 39 AAFJ01000010_00100 - 723 1.2e-07 31.3 19.1 1 2 3.6e-07 0.00081 19.1 3.8 2 27 619 645 618 656 0.88 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 AAFJ01000010_00100 - 723 1.2e-07 31.3 19.1 2 2 1.1e-06 0.0024 17.6 7.4 3 37 674 713 672 715 0.85 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 AAFJ01000010_00100 - 723 0.00043 20.5 0.2 1 2 0.0017 3.9 7.8 0.0 18 34 615 631 610 632 0.78 zinc-ribbon zinc_ribbon_9 PF14369.6 35 AAFJ01000010_00100 - 723 0.00043 20.5 0.2 2 2 0.00031 0.69 10.2 0.0 20 32 671 683 661 685 0.78 zinc-ribbon Zn_ribbon_SprT PF17283.2 38 AAFJ01000010_00100 - 723 0.014 15.3 1.1 1 2 0.2 4.6e+02 0.8 0.1 7 13 621 627 614 632 0.64 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 AAFJ01000010_00100 - 723 0.014 15.3 1.1 2 2 5e-05 0.11 12.4 0.2 4 27 672 699 669 704 0.93 SprT-like zinc ribbon domain Toprim_2 PF13155.6 90 AAFJ01000010_00100 - 723 0.036 14.5 0.3 1 2 0.00035 0.79 10.2 0.1 37 75 91 131 83 152 0.82 Toprim-like Toprim_2 PF13155.6 90 AAFJ01000010_00100 - 723 0.036 14.5 0.3 2 2 0.2 4.5e+02 1.3 0.0 33 58 488 513 448 516 0.80 Toprim-like HTH_34 PF13601.6 80 AAFJ01000010_00100 - 723 0.074 13.2 0.5 1 2 0.4 8.9e+02 0.2 0.0 44 62 465 481 456 496 0.68 Winged helix DNA-binding domain HTH_34 PF13601.6 80 AAFJ01000010_00100 - 723 0.074 13.2 0.5 2 2 0.00034 0.77 10.0 0.1 32 57 524 549 519 558 0.84 Winged helix DNA-binding domain Zn-ribbon_8 PF09723.10 40 AAFJ01000010_00100 - 723 0.077 13.1 0.7 1 2 0.016 35 4.6 0.0 18 34 609 626 603 632 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 AAFJ01000010_00100 - 723 0.077 13.1 0.7 2 2 0.0051 11 6.2 0.1 5 21 672 688 665 693 0.77 Zinc ribbon domain TetR_C_5 PF08360.11 131 AAFJ01000010_00102 - 85 0.012 15.8 4.6 1 1 7.2e-07 0.013 15.7 4.6 8 85 6 84 1 85 0.75 QacR-like protein, C-terminal region YopX PF09643.10 131 AAFJ01000010_00103 - 196 2.1e-13 50.5 2.2 1 1 1.9e-17 3.4e-13 49.8 2.2 46 130 46 140 12 141 0.76 YopX protein YopX PF09643.10 131 AAFJ01000010_00104 - 141 1.7e-05 24.9 0.1 1 1 2.2e-09 2e-05 24.7 0.1 48 89 54 92 7 126 0.76 YopX protein TAFII28 PF04719.14 86 AAFJ01000010_00104 - 141 0.072 13.2 0.0 1 2 0.0052 47 4.2 0.0 52 66 73 87 68 106 0.77 hTAFII28-like protein conserved region TAFII28 PF04719.14 86 AAFJ01000010_00104 - 141 0.072 13.2 0.0 2 2 0.00065 5.9 7.1 0.0 11 36 110 135 104 141 0.87 hTAFII28-like protein conserved region CRISPR_Cas2 PF09827.9 76 AAFJ01000010_00106 - 140 0.00069 19.7 1.5 1 2 3.7e-07 0.0022 18.1 0.0 5 54 7 67 3 83 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 AAFJ01000010_00106 - 140 0.00069 19.7 1.5 2 2 0.15 8.8e+02 0.2 0.3 41 54 111 124 79 136 0.66 CRISPR associated protein Cas2 RRM_1 PF00076.22 70 AAFJ01000010_00106 - 140 0.0021 17.8 0.5 1 2 1.4e-06 0.0083 15.9 0.1 6 62 7 68 5 70 0.89 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_1 PF00076.22 70 AAFJ01000010_00106 - 140 0.0021 17.8 0.5 2 2 0.22 1.3e+03 -0.7 0.0 4 18 104 118 104 132 0.80 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LPD11 PF18824.1 69 AAFJ01000010_00106 - 140 0.086 12.9 1.8 1 3 0.34 2e+03 -1.1 0.0 28 50 10 32 2 33 0.77 Large polyvalent protein-associated domain 11 LPD11 PF18824.1 69 AAFJ01000010_00106 - 140 0.086 12.9 1.8 2 3 0.84 5e+03 -2.3 0.0 61 67 57 63 48 74 0.54 Large polyvalent protein-associated domain 11 LPD11 PF18824.1 69 AAFJ01000010_00106 - 140 0.086 12.9 1.8 3 3 2.9e-05 0.17 12.0 0.4 25 55 102 132 86 137 0.88 Large polyvalent protein-associated domain 11 AAA_31 PF13614.6 177 AAFJ01000010_00107 - 219 1.6e-11 44.5 4.7 1 1 8.8e-14 1.8e-10 41.1 4.7 2 74 2 85 1 217 0.77 AAA domain MipZ PF09140.11 262 AAFJ01000010_00107 - 219 3e-11 43.1 1.8 1 2 1.7e-09 3.3e-06 26.6 1.0 2 145 3 133 2 164 0.72 ATPase MipZ MipZ PF09140.11 262 AAFJ01000010_00107 - 219 3e-11 43.1 1.8 2 2 0.0032 6.4 6.0 0.0 213 258 174 214 132 217 0.88 ATPase MipZ CbiA PF01656.23 128 AAFJ01000010_00107 - 219 4.3e-09 36.5 0.1 1 1 3.2e-12 6.4e-09 35.9 0.1 5 110 8 171 4 190 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 305 AAFJ01000010_00107 - 219 0.00013 21.3 0.3 1 2 4.1e-07 0.00081 18.7 0.0 8 46 9 47 1 75 0.87 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 AAFJ01000010_00107 - 219 0.00013 21.3 0.3 2 2 0.16 3.1e+02 0.3 0.5 139 181 117 159 109 217 0.58 Anion-transporting ATPase VirC1 PF07015.11 231 AAFJ01000010_00107 - 219 0.0012 18.2 0.1 1 2 0.00087 1.7 7.9 0.0 1 40 1 40 1 58 0.86 VirC1 protein VirC1 PF07015.11 231 AAFJ01000010_00107 - 219 0.0012 18.2 0.1 2 2 0.00046 0.91 8.8 0.0 87 152 83 149 67 213 0.76 VirC1 protein ABC2_membrane_3 PF12698.7 345 AAFJ01000010_00107 - 219 0.0018 17.4 0.8 1 1 1e-06 0.002 17.3 0.8 21 128 19 138 13 211 0.62 ABC-2 family transporter protein AAA_24 PF13479.6 197 AAFJ01000010_00107 - 219 0.0038 17.0 1.2 1 2 3.1e-06 0.0061 16.3 0.1 11 73 11 87 9 91 0.75 AAA domain AAA_24 PF13479.6 197 AAFJ01000010_00107 - 219 0.0038 17.0 1.2 2 2 1.3 2.6e+03 -2.1 0.0 31 58 185 213 158 217 0.59 AAA domain ParA PF10609.9 246 AAFJ01000010_00107 - 219 0.004 16.6 0.0 1 1 3.6e-06 0.0072 15.8 0.0 6 41 4 39 1 58 0.85 NUBPL iron-transfer P-loop NTPase ATP_bind_1 PF03029.17 241 AAFJ01000010_00107 - 219 0.019 14.8 0.1 1 2 3.3e-05 0.066 13.0 0.0 6 34 12 40 10 50 0.91 Conserved hypothetical ATP binding protein ATP_bind_1 PF03029.17 241 AAFJ01000010_00107 - 219 0.019 14.8 0.1 2 2 0.66 1.3e+03 -1.1 0.0 196 196 89 89 40 153 0.53 Conserved hypothetical ATP binding protein SNF2_N PF00176.23 350 AAFJ01000010_00109 - 1969 3.6e-15 55.6 0.1 1 1 4.3e-18 1.1e-14 53.9 0.1 59 244 978 1229 962 1252 0.81 SNF2 family N-terminal domain Helicase_C PF00271.31 111 AAFJ01000010_00109 - 1969 1.5e-09 38.2 7.1 1 4 2.1 5.5e+03 -2.3 0.2 7 68 533 593 528 600 0.68 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 AAFJ01000010_00109 - 1969 1.5e-09 38.2 7.1 2 4 0.19 4.8e+02 1.1 0.0 38 71 1029 1062 995 1065 0.73 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 AAFJ01000010_00109 - 1969 1.5e-09 38.2 7.1 3 4 1.1e-12 2.8e-09 37.3 0.0 21 110 1496 1593 1482 1594 0.80 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 AAFJ01000010_00109 - 1969 1.5e-09 38.2 7.1 4 4 2.9 7.3e+03 -2.7 0.2 44 68 1925 1947 1884 1954 0.61 Helicase conserved C-terminal domain ResIII PF04851.15 171 AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 1 6 1.5 3.8e+03 -2.3 0.0 62 85 264 291 253 344 0.53 Type III restriction enzyme, res subunit ResIII PF04851.15 171 AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 2 6 5.5 1.4e+04 -4.1 0.3 79 119 526 569 493 586 0.60 Type III restriction enzyme, res subunit ResIII PF04851.15 171 AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 3 6 0.82 2.1e+03 -1.5 1.8 50 120 856 930 849 950 0.63 Type III restriction enzyme, res subunit ResIII PF04851.15 171 AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 4 6 1e-11 2.6e-08 34.1 3.3 3 169 959 1198 957 1200 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 5 6 2 5e+03 -2.7 1.2 56 114 1686 1730 1620 1803 0.61 Type III restriction enzyme, res subunit ResIII PF04851.15 171 AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 6 6 2.8 7e+03 -3.2 1.0 64 74 1911 1921 1876 1964 0.46 Type III restriction enzyme, res subunit Eco57I PF07669.11 106 AAFJ01000010_00109 - 1969 2.1e-06 28.2 1.2 1 3 1e-08 2.6e-05 24.7 0.1 2 72 281 348 280 383 0.65 Eco57I restriction-modification methylase Eco57I PF07669.11 106 AAFJ01000010_00109 - 1969 2.1e-06 28.2 1.2 2 3 7 1.8e+04 -4.1 0.0 30 44 761 775 758 777 0.86 Eco57I restriction-modification methylase Eco57I PF07669.11 106 AAFJ01000010_00109 - 1969 2.1e-06 28.2 1.2 3 3 2.3 6e+03 -2.2 0.0 34 72 902 939 884 960 0.65 Eco57I restriction-modification methylase DEAD PF00270.29 176 AAFJ01000010_00109 - 1969 0.00053 19.8 2.9 1 3 1.3 3.4e+03 -2.4 0.0 52 81 261 285 246 311 0.72 DEAD/DEAH box helicase DEAD PF00270.29 176 AAFJ01000010_00109 - 1969 0.00053 19.8 2.9 2 3 2.3e-06 0.006 16.4 1.4 6 150 966 1167 961 1205 0.70 DEAD/DEAH box helicase DEAD PF00270.29 176 AAFJ01000010_00109 - 1969 0.00053 19.8 2.9 3 3 3.5 9.1e+03 -3.8 0.0 80 110 1525 1560 1509 1573 0.59 DEAD/DEAH box helicase MTS PF05175.14 169 AAFJ01000010_00109 - 1969 0.0033 17.0 0.0 1 1 5.8e-06 0.015 14.9 0.0 79 138 261 329 218 339 0.69 Methyltransferase small domain Methyltransf_23 PF13489.6 165 AAFJ01000010_00109 - 1969 0.056 13.3 0.0 1 1 9.8e-05 0.25 11.2 0.0 22 89 221 288 194 345 0.86 Methyltransferase domain Fic PF02661.18 97 AAFJ01000010_00112 - 156 0.025 15.5 0.0 1 2 1.2 1.1e+04 -2.6 0.0 44 58 11 27 6 46 0.60 Fic/DOC family Fic PF02661.18 97 AAFJ01000010_00112 - 156 0.025 15.5 0.0 2 2 6.1e-06 0.055 14.4 0.0 2 31 58 90 57 124 0.76 Fic/DOC family Adenyl_cycl_N PF12633.7 199 AAFJ01000010_00112 - 156 0.086 12.7 0.1 1 1 1.8e-05 0.16 11.8 0.1 105 143 9 47 2 55 0.92 Adenylate cyclase NT domain CRISPR_Cas2 PF09827.9 76 AAFJ01000010_00114 - 151 1e-05 25.6 2.4 1 2 4.6e-09 1.6e-05 24.9 0.0 5 52 12 76 9 91 0.73 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 AAFJ01000010_00114 - 151 1e-05 25.6 2.4 2 2 0.32 1.1e+03 -0.2 0.7 43 57 124 141 113 148 0.58 CRISPR associated protein Cas2 GIT_CC PF16559.5 66 AAFJ01000010_00114 - 151 0.014 15.2 5.0 1 1 6.4e-06 0.023 14.6 5.0 10 59 90 139 84 148 0.92 GIT coiled-coil Rho guanine nucleotide exchange factor ABC_tran_Xtn PF12848.7 85 AAFJ01000010_00114 - 151 0.014 15.4 2.7 1 1 6.7e-06 0.024 14.7 2.7 23 59 109 145 93 151 0.81 ABC transporter DUF5595 PF18077.1 73 AAFJ01000010_00114 - 151 0.039 14.0 3.6 1 1 2.2e-05 0.08 13.0 3.6 26 72 100 145 95 146 0.90 Domain of unknown function (DUF5595) DUF1722 PF08349.11 117 AAFJ01000010_00114 - 151 0.047 14.0 2.6 1 3 0.24 8.6e+02 0.2 0.0 40 71 19 50 16 66 0.70 Protein of unknown function (DUF1722) DUF1722 PF08349.11 117 AAFJ01000010_00114 - 151 0.047 14.0 2.6 2 3 0.0093 33 4.8 0.0 55 106 46 97 37 102 0.88 Protein of unknown function (DUF1722) DUF1722 PF08349.11 117 AAFJ01000010_00114 - 151 0.047 14.0 2.6 3 3 0.0017 6.2 7.1 2.0 35 72 109 146 96 150 0.86 Protein of unknown function (DUF1722) DUF2600 PF10776.9 328 AAFJ01000010_00115 - 151 0.0034 16.3 0.5 1 1 2e-06 0.0044 15.9 0.5 193 244 62 112 33 126 0.87 Protein of unknown function (DUF2600) DUF2070 PF09843.9 564 AAFJ01000010_00115 - 151 0.0043 15.4 8.7 1 1 2.2e-06 0.0049 15.2 8.7 67 171 8 141 1 147 0.74 Predicted membrane protein (DUF2070) COX7a PF02238.15 53 AAFJ01000010_00115 - 151 0.0096 16.3 1.7 1 2 0.00034 0.76 10.2 0.1 14 49 3 38 2 41 0.87 Cytochrome c oxidase subunit VII COX7a PF02238.15 53 AAFJ01000010_00115 - 151 0.0096 16.3 1.7 2 2 0.019 42 4.6 0.1 27 47 117 137 113 141 0.89 Cytochrome c oxidase subunit VII HlyIII PF03006.20 224 AAFJ01000010_00115 - 151 0.013 15.3 7.6 1 1 6.5e-06 0.015 15.1 7.6 39 162 13 143 2 151 0.70 Haemolysin-III related DUF1129 PF06570.11 206 AAFJ01000010_00115 - 151 0.022 14.3 8.0 1 2 0.021 46 3.4 0.1 142 182 4 45 1 52 0.70 Protein of unknown function (DUF1129) DUF1129 PF06570.11 206 AAFJ01000010_00115 - 151 0.022 14.3 8.0 2 2 1.2e-05 0.027 13.9 3.5 87 172 55 139 42 148 0.77 Protein of unknown function (DUF1129) DUF1772 PF08592.11 137 AAFJ01000010_00115 - 151 0.027 14.8 3.3 1 1 1.5e-05 0.033 14.5 2.3 26 80 7 69 2 116 0.80 Domain of unknown function (DUF1772) DUF2663 PF10864.8 127 AAFJ01000010_00115 - 151 0.076 13.4 14.4 1 2 0.00024 0.53 10.7 5.7 9 80 6 78 1 81 0.70 Protein of unknown function (DUF2663) DUF2663 PF10864.8 127 AAFJ01000010_00115 - 151 0.076 13.4 14.4 2 2 0.0013 3 8.3 1.5 26 78 89 146 80 149 0.54 Protein of unknown function (DUF2663) DUF898 PF05987.13 342 AAFJ01000010_00115 - 151 0.079 12.0 6.5 1 2 0.00025 0.57 9.2 2.6 174 241 2 69 1 80 0.76 Bacterial protein of unknown function (DUF898) DUF898 PF05987.13 342 AAFJ01000010_00115 - 151 0.079 12.0 6.5 2 2 0.0045 10 5.1 0.1 196 244 90 138 77 148 0.57 Bacterial protein of unknown function (DUF898) Relaxase PF03432.14 242 AAFJ01000010_00116 - 554 2e-07 30.9 0.8 1 3 0.068 1.2e+03 -1.2 0.6 125 176 57 91 40 128 0.47 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 AAFJ01000010_00116 - 554 2e-07 30.9 0.8 2 3 1.1e-11 2e-07 30.9 0.8 33 157 142 261 128 286 0.80 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 AAFJ01000010_00116 - 554 2e-07 30.9 0.8 3 3 0.022 3.9e+02 0.5 0.9 131 164 415 461 357 481 0.72 Relaxase/Mobilisation nuclease domain RHH_7 PF16777.5 74 AAFJ01000010_00117 - 185 0.085 13.3 6.7 1 2 0.0067 1.2e+02 3.2 0.1 36 59 5 28 2 40 0.86 Transcriptional regulator, RHH-like, CopG RHH_7 PF16777.5 74 AAFJ01000010_00117 - 185 0.085 13.3 6.7 2 2 1.8e-05 0.32 11.4 2.9 24 65 58 100 38 107 0.85 Transcriptional regulator, RHH-like, CopG Fic PF02661.18 97 AAFJ01000017_00001 - 244 1.7e-17 64.0 0.1 1 2 2.6e-21 4.6e-17 62.7 0.0 2 96 80 180 79 181 0.94 Fic/DOC family Fic PF02661.18 97 AAFJ01000017_00001 - 244 1.7e-17 64.0 0.1 2 2 0.4 7.1e+03 -2.0 0.0 38 57 201 220 191 232 0.58 Fic/DOC family Toprim_3 PF13362.6 95 AAFJ01000017_00002 - 376 5.2e-09 36.3 0.0 1 1 9.2e-13 8.2e-09 35.7 0.0 3 94 264 365 262 366 0.83 Toprim domain Toprim_4 PF13662.6 89 AAFJ01000017_00002 - 376 0.017 15.6 0.1 1 1 3.9e-06 0.035 14.6 0.1 2 80 262 336 261 341 0.89 Toprim domain SSB PF00436.25 104 AAFJ01000017_00005 - 142 1.4e-29 102.2 0.8 1 1 2.3e-33 2.1e-29 101.6 0.8 1 104 2 104 2 104 0.97 Single-strand binding protein family tRNA_anti-codon PF01336.25 76 AAFJ01000017_00005 - 142 0.00012 22.0 0.1 1 1 1.9e-08 0.00017 21.5 0.1 12 74 32 102 12 104 0.84 OB-fold nucleic acid binding domain DUF1640 PF07798.11 175 AAFJ01000017_00008 - 112 0.0011 19.0 0.7 1 1 1.6e-07 0.0014 18.7 0.7 99 174 20 111 15 112 0.72 Protein of unknown function (DUF1640) Merozoite_SPAM PF07133.11 182 AAFJ01000017_00008 - 112 0.0095 16.0 4.1 1 1 1.3e-06 0.012 15.6 4.1 25 81 28 85 22 90 0.90 Merozoite surface protein (SPAM) RecT PF03837.14 199 AAFJ01000017_00009 - 268 2.3e-36 125.2 0.1 1 1 2.2e-40 4e-36 124.4 0.0 3 194 13 194 11 199 0.92 RecT family DUF2624 PF11116.8 83 AAFJ01000017_00015 - 135 0.041 14.8 0.1 1 1 9.3e-06 0.084 13.8 0.1 19 63 53 97 49 102 0.87 Protein of unknown function (DUF2624) DUF4883 PF16224.5 119 AAFJ01000017_00015 - 135 0.075 13.3 2.6 1 1 1e-05 0.094 13.0 2.6 22 114 2 95 1 98 0.90 DOmain of unknown function (DUF4883) DUF2031 PF09592.10 227 AAFJ01000017_00019 - 64 0.013 15.0 5.3 1 1 1.4e-06 0.013 15.1 5.3 109 165 2 58 1 64 0.89 Protein of unknown function (DUF2031) RNA_pol_Rpb2_45 PF10385.9 65 AAFJ01000017_00019 - 64 0.1 12.9 0.4 1 1 1.4e-05 0.13 12.6 0.4 19 58 11 52 3 58 0.73 RNA polymerase beta subunit external 1 domain DUF4830 PF16112.5 84 AAFJ01000017_00020 - 97 0.0075 16.7 0.1 1 1 1.1e-06 0.0094 16.4 0.1 21 72 11 75 4 89 0.74 Domain of unknown function (DUF4830) ParE_toxin PF05016.15 90 AAFJ01000017_00020 - 97 0.07 13.7 0.0 1 1 1e-05 0.094 13.3 0.0 7 88 4 82 1 83 0.74 ParE toxin of type II toxin-antitoxin system, parDE PDDEXK_1 PF12705.7 255 AAFJ01000017_00022 - 317 1.5e-05 25.0 0.0 1 2 6.2e-09 2.8e-05 24.2 0.0 125 255 94 213 33 213 0.69 PD-(D/E)XK nuclease superfamily PDDEXK_1 PF12705.7 255 AAFJ01000017_00022 - 317 1.5e-05 25.0 0.0 2 2 1.3 5.8e+03 -3.1 0.0 94 107 251 265 227 303 0.57 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 162 AAFJ01000017_00022 - 317 4.4e-05 23.6 1.4 1 2 1.1e-08 4.9e-05 23.5 0.1 54 160 98 212 74 214 0.82 Domain of unknown function DUF83 Cas_Cas4 PF01930.17 162 AAFJ01000017_00022 - 317 4.4e-05 23.6 1.4 2 2 0.89 4e+03 -2.2 0.1 122 139 239 256 229 271 0.51 Domain of unknown function DUF83 MapZ_C2 PF18708.1 92 AAFJ01000017_00022 - 317 0.021 15.1 0.1 1 2 1.8e-05 0.081 13.2 0.0 58 90 131 164 115 165 0.80 MapZ extracellular C-terminal domain 2 MapZ_C2 PF18708.1 92 AAFJ01000017_00022 - 317 0.021 15.1 0.1 2 2 2.7 1.2e+04 -3.4 0.0 30 38 306 314 292 315 0.66 MapZ extracellular C-terminal domain 2 NERD PF08378.11 108 AAFJ01000017_00022 - 317 0.072 13.6 0.1 1 1 3.7e-05 0.17 12.4 0.1 8 70 72 134 65 193 0.69 Nuclease-related domain G-gamma PF00631.22 68 AAFJ01000017_00023 - 200 0.045 13.8 0.6 1 1 6.2e-06 0.11 12.5 0.6 4 32 8 38 6 46 0.86 GGL domain YycI PF09648.10 230 AAFJ01000017_00024 - 74 0.011 15.3 0.6 1 1 1.9e-06 0.011 15.3 0.6 149 195 17 61 2 72 0.82 YycH protein Mad3_BUB1_I PF08311.12 124 AAFJ01000017_00024 - 74 0.023 14.7 1.0 1 1 4.5e-06 0.027 14.5 1.0 6 75 2 64 1 71 0.91 Mad3/BUB1 homology region 1 Rsbr_N PF08678.10 130 AAFJ01000017_00024 - 74 0.049 13.7 0.1 1 2 0.0072 43 4.2 0.1 97 126 5 34 1 37 0.81 Rsbr N terminal Rsbr_N PF08678.10 130 AAFJ01000017_00024 - 74 0.049 13.7 0.1 2 2 0.0002 1.2 9.2 0.0 51 83 38 70 23 73 0.79 Rsbr N terminal DUF4450 PF14614.6 217 AAFL01000016_00001 - 139 0.0036 16.9 0.7 1 2 0.5 3e+03 -2.4 0.0 182 194 34 45 16 58 0.48 Domain of unknown function (DUF4450) DUF4450 PF14614.6 217 AAFL01000016_00001 - 139 0.0036 16.9 0.7 2 2 9.4e-07 0.0056 16.3 0.1 6 48 74 116 71 125 0.94 Domain of unknown function (DUF4450) VanW PF04294.13 130 AAFL01000016_00001 - 139 0.013 15.2 0.3 1 2 0.22 1.3e+03 -1.0 0.0 93 117 20 45 10 56 0.66 VanW like protein VanW PF04294.13 130 AAFL01000016_00001 - 139 0.013 15.2 0.3 2 2 7.5e-06 0.045 13.4 0.1 26 66 88 129 77 134 0.87 VanW like protein SBDS PF01172.18 88 AAFL01000016_00001 - 139 0.089 12.9 4.1 1 2 0.15 9.2e+02 0.0 0.1 66 76 25 35 13 38 0.82 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS PF01172.18 88 AAFL01000016_00001 - 139 0.089 12.9 4.1 2 2 2.8e-05 0.17 12.0 2.2 9 31 37 59 32 119 0.73 Shwachman-Bodian-Diamond syndrome (SBDS) protein Phage_lysozyme PF00959.19 109 AAFL01000016_00002 - 644 1.2e-10 41.7 1.2 1 2 0.5 8.9e+03 -2.8 0.1 17 37 323 343 307 360 0.73 Phage lysozyme Phage_lysozyme PF00959.19 109 AAFL01000016_00002 - 644 1.2e-10 41.7 1.2 2 2 1.1e-14 2e-10 41.1 0.1 3 108 521 630 519 631 0.86 Phage lysozyme SseC PF04888.12 317 AAFL01000016_00004 - 1310 0.0049 16.5 0.2 1 1 3e-06 0.014 15.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family ThrE PF06738.12 241 AAFL01000016_00004 - 1310 0.014 14.8 0.8 1 1 7.8e-06 0.035 13.5 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter Hormone_2 PF00123.20 28 AAFL01000016_00004 - 1310 0.036 14.0 0.1 1 1 3.5e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone APOBEC_C PF05240.14 78 AAFL01000016_00004 - 1310 0.061 13.3 0.4 1 1 6.9e-05 0.31 11.0 0.4 26 76 766 819 755 821 0.85 APOBEC-like C-terminal domain UvrA_DNA-bind PF17755.1 110 AAFL01000016_00005 - 422 0.012 15.9 0.3 1 2 0.00028 5.1 7.5 0.1 24 61 32 69 19 84 0.84 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 AAFL01000016_00005 - 422 0.012 15.9 0.3 2 2 0.00086 15 5.9 0.0 15 33 92 109 88 126 0.76 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 AAFL01000016_00007 - 426 0.0051 17.1 0.3 1 3 0.00018 3.2 8.1 0.0 24 65 36 77 30 90 0.84 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 AAFL01000016_00007 - 426 0.0051 17.1 0.3 2 3 0.00088 16 5.9 0.0 15 33 96 113 92 129 0.75 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 AAFL01000016_00007 - 426 0.0051 17.1 0.3 3 3 0.29 5.3e+03 -2.2 0.0 77 97 316 336 306 338 0.82 UvrA DNA-binding domain Glyco_tranf_2_5 PF13712.6 210 AAFL01000016_00008 - 267 0.00068 19.4 3.8 1 1 7.1e-08 0.0013 18.5 3.8 4 77 114 190 111 198 0.85 Glycosyltransferase like family TraG_N PF07916.11 467 AAFL01000016_00009 - 900 3e-39 135.2 20.8 1 3 1.7e-43 3e-39 135.2 20.8 38 465 23 446 1 452 0.78 TraG-like protein, N-terminal region TraG_N PF07916.11 467 AAFL01000016_00009 - 900 3e-39 135.2 20.8 2 3 0.1 1.8e+03 -2.6 0.9 267 318 538 590 504 600 0.52 TraG-like protein, N-terminal region TraG_N PF07916.11 467 AAFL01000016_00009 - 900 3e-39 135.2 20.8 3 3 1 1.8e+04 -14.0 16.2 228 265 808 845 652 899 0.59 TraG-like protein, N-terminal region DUF4131 PF13567.6 167 AAFL01000016_00010 - 106 0.0008 19.1 0.1 1 1 1.7e-07 0.001 18.8 0.1 3 83 19 97 17 100 0.70 Domain of unknown function (DUF4131) DUF981 PF06168.11 187 AAFL01000016_00010 - 106 0.015 15.2 3.3 1 1 3.1e-06 0.019 14.9 3.3 119 175 9 66 4 73 0.87 Protein of unknown function (DUF981) Wzy_C PF04932.15 155 AAFL01000016_00010 - 106 0.056 13.1 1.3 1 1 1.1e-05 0.064 12.9 1.3 19 65 24 71 19 96 0.81 O-Antigen ligase YafQ_toxin PF15738.5 88 AAFL01000016_00011 - 91 8.9e-29 99.7 1.1 1 1 5.4e-33 9.7e-29 99.5 1.1 2 88 3 89 2 89 0.98 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 AAFL01000016_00013 - 93 1.1e-07 32.4 0.1 1 1 6.6e-12 1.2e-07 32.3 0.1 4 82 6 85 3 89 0.87 ParE toxin of type II toxin-antitoxin system, parDE HicB_lk_antitox PF15919.5 123 AAFL01000016_00015 - 119 8.3e-09 35.6 0.3 1 2 2.1e-06 0.038 14.1 0.0 1 60 12 74 12 79 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 AAFL01000016_00015 - 119 8.3e-09 35.6 0.3 2 2 2e-08 0.00035 20.7 0.1 88 123 77 108 72 108 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 AAFL01000016_00016 - 86 1.8e-06 27.9 0.0 1 1 2.1e-10 3.8e-06 26.9 0.0 5 55 35 82 31 83 0.88 HicA toxin of bacterial toxin-antitoxin, DUF5309 PF17236.2 280 AAFL01000016_00017 - 81 3e-05 23.5 0.5 1 1 1.8e-09 3.3e-05 23.4 0.5 4 53 24 74 21 81 0.82 Family of unknown function (DUF5309) SGT1 PF07093.11 583 AAFL01000016_00019 - 50 0.046 12.2 2.7 1 1 7.5e-06 0.045 12.2 2.7 511 553 7 49 1 50 0.79 SGT1 protein PG_binding_4 PF12229.8 114 AAFL01000016_00019 - 50 0.057 13.7 1.0 1 1 1.1e-05 0.065 13.5 1.0 42 79 10 48 2 50 0.81 Putative peptidoglycan binding domain DUF2175 PF09943.9 98 AAFL01000016_00019 - 50 0.077 13.3 1.2 1 1 1.4e-05 0.082 13.2 1.2 60 89 9 38 2 47 0.83 Uncharacterized protein conserved in archaea (DUF2175) DUF4795 PF16043.5 204 AAFL01000016_00020 - 201 0.026 14.1 0.1 1 1 2.4e-06 0.043 13.4 0.1 60 124 45 109 31 174 0.86 Domain of unknown function (DUF4795) DUF3825 PF12873.7 239 AAFL01000016_00021 - 335 1.9e-28 99.6 0.3 1 1 1.7e-32 3e-28 98.9 0.3 2 239 107 330 106 330 0.85 Domain of unknown function (DUF3825) GAGBD PF16828.5 152 AAFL01000016_00022 - 80 0.011 15.8 1.4 1 1 6.7e-07 0.012 15.7 1.4 2 69 9 76 8 80 0.90 GAG-binding domain on surface antigen IMS_C PF11799.8 118 AAFL01000016_00025 - 236 1.1e-12 48.7 0.0 1 1 2.1e-16 1.9e-12 48.0 0.0 8 111 94 221 90 226 0.91 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 32 AAFL01000016_00025 - 236 0.0002 21.5 0.0 1 2 7.5e-08 0.00067 19.8 0.1 6 32 19 46 16 46 0.92 IMS family HHH motif IMS_HHH PF11798.8 32 AAFL01000016_00025 - 236 0.0002 21.5 0.0 2 2 1.6 1.4e+04 -3.2 0.0 17 28 79 90 79 92 0.79 IMS family HHH motif AAA_25 PF13481.6 194 AAFL01000016_00026 - 623 4.9e-30 104.5 0.0 1 1 6.5e-33 8.9e-30 103.7 0.0 11 193 306 475 297 476 0.87 AAA domain Toprim_2 PF13155.6 90 AAFL01000016_00026 - 623 6.6e-18 64.9 0.0 1 2 1.8e-20 2.5e-17 63.1 0.0 1 90 189 278 189 278 0.91 Toprim-like Toprim_2 PF13155.6 90 AAFL01000016_00026 - 623 6.6e-18 64.9 0.0 2 2 3.4 4.7e+03 -1.9 0.1 44 77 393 427 381 441 0.75 Toprim-like DUF3991 PF13154.6 76 AAFL01000016_00026 - 623 3.3e-14 53.0 0.0 1 2 1.2e-16 1.7e-13 50.7 0.0 1 74 112 183 112 185 0.93 Protein of unknown function (DUF3991) DUF3991 PF13154.6 76 AAFL01000016_00026 - 623 3.3e-14 53.0 0.0 2 2 2.1 3e+03 -1.3 0.0 6 19 589 602 587 620 0.71 Protein of unknown function (DUF3991) DnaB_C PF03796.15 255 AAFL01000016_00026 - 623 8.6e-09 35.1 0.0 1 2 0.00028 0.39 10.0 0.0 19 45 329 355 326 366 0.87 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 AAFL01000016_00026 - 623 8.6e-09 35.1 0.0 2 2 3.6e-08 4.9e-05 22.8 0.0 90 185 385 478 369 490 0.79 DnaB-like helicase C terminal domain Toprim_3 PF13362.6 95 AAFL01000016_00026 - 623 1.8e-08 34.6 0.2 1 2 3.2e-10 4.4e-07 30.2 0.0 2 92 188 281 187 283 0.86 Toprim domain Toprim_3 PF13362.6 95 AAFL01000016_00026 - 623 1.8e-08 34.6 0.2 2 2 0.35 4.8e+02 1.2 0.6 40 85 393 439 381 446 0.77 Toprim domain ATPase PF06745.13 231 AAFL01000016_00026 - 623 7.2e-06 25.5 0.1 1 1 1.5e-07 0.0002 20.8 0.0 16 171 326 478 324 511 0.73 KaiC AAA_22 PF13401.6 137 AAFL01000016_00026 - 623 0.0002 21.6 0.0 1 1 4.2e-07 0.00058 20.2 0.0 6 130 330 470 329 475 0.76 AAA domain NACHT PF05729.12 166 AAFL01000016_00026 - 623 0.0033 17.4 0.0 1 2 0.83 1.1e+03 -0.7 0.0 43 71 6 33 3 43 0.76 NACHT domain NACHT PF05729.12 166 AAFL01000016_00026 - 623 0.0033 17.4 0.0 2 2 1.9e-05 0.027 14.4 0.0 2 28 331 357 330 429 0.89 NACHT domain Toprim_4 PF13662.6 89 AAFL01000016_00026 - 623 0.0078 16.7 0.0 1 1 1.9e-05 0.026 15.0 0.0 47 88 227 267 212 268 0.81 Toprim domain AAA_5 PF07728.14 138 AAFL01000016_00026 - 623 0.018 15.0 0.0 1 1 4.6e-05 0.063 13.3 0.0 3 26 333 357 332 406 0.82 AAA domain (dynein-related subfamily) Rad51 PF08423.11 255 AAFL01000016_00026 - 623 0.05 12.8 0.0 1 1 0.00039 0.54 9.5 0.0 34 190 326 475 324 494 0.69 Rad51 Toprim PF01751.22 103 AAFL01000016_00026 - 623 0.051 13.8 0.0 1 1 8.3e-05 0.12 12.7 0.0 51 87 222 258 204 269 0.85 Toprim domain AAA_11 PF13086.6 261 AAFL01000016_00026 - 623 0.065 13.0 0.0 1 2 0.19 2.6e+02 1.2 0.0 50 97 230 271 208 294 0.80 AAA domain AAA_11 PF13086.6 261 AAFL01000016_00026 - 623 0.065 13.0 0.0 2 2 0.00073 1 9.1 0.0 18 43 330 355 320 400 0.76 AAA domain MobA_MobL PF03389.15 222 AAFL01000016_00027 - 498 3.7e-79 265.5 0.0 1 2 4.8e-82 1.4e-78 263.6 0.0 1 222 17 246 17 246 0.99 MobA/MobL family MobA_MobL PF03389.15 222 AAFL01000016_00027 - 498 3.7e-79 265.5 0.0 2 2 0.57 1.7e+03 -1.5 0.1 7 188 309 339 297 367 0.59 MobA/MobL family Spectrin PF00435.21 105 AAFL01000016_00027 - 498 0.015 15.8 2.4 1 2 6e-05 0.18 12.3 0.2 6 102 269 365 264 368 0.75 Spectrin repeat Spectrin PF00435.21 105 AAFL01000016_00027 - 498 0.015 15.8 2.4 2 2 0.092 2.7e+02 2.1 0.1 33 90 406 463 396 464 0.78 Spectrin repeat Prominin PF05478.11 800 AAFL01000016_00027 - 498 0.02 12.9 1.9 1 1 9.6e-06 0.029 12.4 1.9 542 695 321 479 298 487 0.84 Prominin Snapin_Pallidin PF14712.6 90 AAFL01000016_00027 - 498 0.021 15.2 2.0 1 2 2e-05 0.059 13.8 0.3 14 69 337 393 335 395 0.95 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 AAFL01000016_00027 - 498 0.021 15.2 2.0 2 2 0.46 1.4e+03 -0.2 0.1 36 69 430 465 427 482 0.67 Snapin/Pallidin DUF2408 PF10303.9 135 AAFL01000016_00027 - 498 0.032 14.8 2.4 1 2 2e-05 0.06 13.9 0.3 39 120 312 394 253 396 0.74 Protein of unknown function (DUF2408) DUF2408 PF10303.9 135 AAFL01000016_00027 - 498 0.032 14.8 2.4 2 2 0.37 1.1e+03 0.1 0.1 43 67 429 454 398 489 0.61 Protein of unknown function (DUF2408) Tup_N PF08581.10 77 AAFL01000016_00027 - 498 0.065 13.5 2.3 1 4 1.8 5.3e+03 -2.2 0.0 45 61 158 174 157 177 0.82 Tup N-terminal Tup_N PF08581.10 77 AAFL01000016_00027 - 498 0.065 13.5 2.3 2 4 2.8 8.4e+03 -2.8 0.0 19 48 244 273 229 276 0.72 Tup N-terminal Tup_N PF08581.10 77 AAFL01000016_00027 - 498 0.065 13.5 2.3 3 4 0.0022 6.6 7.1 0.3 28 64 339 375 318 383 0.90 Tup N-terminal Tup_N PF08581.10 77 AAFL01000016_00027 - 498 0.065 13.5 2.3 4 4 0.023 67 3.9 0.0 12 51 422 461 417 467 0.74 Tup N-terminal DUF3847 PF12958.7 81 AAFL01000016_00028 - 119 1.8e-31 108.1 8.2 1 1 4.3e-35 2.6e-31 107.6 8.2 1 81 6 89 6 89 0.98 Protein of unknown function (DUF3847) CENP-Q PF13094.6 168 AAFL01000016_00028 - 119 0.034 14.3 11.9 1 1 7.3e-06 0.044 14.0 11.9 46 96 5 56 2 115 0.74 CENP-Q, a CENPA-CAD centromere complex subunit TPR_8 PF13181.6 34 AAFL01000016_00028 - 119 0.078 13.2 0.1 1 1 3.3e-05 0.2 12.0 0.1 6 27 20 41 16 48 0.89 Tetratricopeptide repeat CPT PF07931.12 174 AAFL01000016_00029 - 146 4e-06 26.8 0.0 1 1 1.1e-09 4.9e-06 26.5 0.0 59 172 20 137 11 139 0.78 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 130 AAFL01000016_00029 - 146 9.4e-06 26.2 0.0 1 1 2.6e-09 1.2e-05 25.9 0.0 46 122 15 98 1 106 0.77 AAA domain AAA_33 PF13671.6 143 AAFL01000016_00029 - 146 0.00063 19.9 0.0 1 1 1.8e-07 0.0008 19.6 0.0 55 136 30 109 9 112 0.82 AAA domain MKT1_N PF12247.8 90 AAFL01000016_00029 - 146 0.027 14.8 0.0 1 1 1.4e-05 0.063 13.6 0.0 15 52 5 40 3 131 0.90 Temperature dependent protein affecting M2 dsRNA replication Fructosamin_kin PF03881.14 288 AAFL01000016_00030 - 89 0.097 11.9 0.0 1 1 5.4e-06 0.097 11.9 0.0 45 94 35 84 7 89 0.70 Fructosamine kinase Ank_3 PF13606.6 31 AAFL01000019_00001 - 304 9.9e-11 40.9 0.3 1 4 0.015 53 4.9 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000019_00001 - 304 9.9e-11 40.9 0.3 2 4 0.024 85 4.2 0.0 10 29 142 160 132 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000019_00001 - 304 9.9e-11 40.9 0.3 3 4 5.6e-07 0.002 18.5 0.0 2 30 168 195 167 196 0.95 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000019_00001 - 304 9.9e-11 40.9 0.3 4 4 0.0018 6.3 7.7 0.0 1 30 206 235 206 236 0.92 Ankyrin repeat Ank_2 PF12796.7 83 AAFL01000019_00001 - 304 1.5e-08 35.1 0.1 1 2 0.49 1.8e+03 -0.4 0.0 4 18 74 92 70 127 0.58 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 AAFL01000019_00001 - 304 1.5e-08 35.1 0.1 2 2 3.2e-11 1.1e-07 32.3 0.0 5 80 142 235 138 238 0.79 Ankyrin repeats (3 copies) Ank_4 PF13637.6 55 AAFL01000019_00001 - 304 4.2e-06 27.2 0.1 1 3 0.81 2.9e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000019_00001 - 304 4.2e-06 27.2 0.1 2 3 4.4e-07 0.0016 19.0 0.0 13 55 146 188 134 188 0.83 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000019_00001 - 304 4.2e-06 27.2 0.1 3 3 0.018 63 4.3 0.0 3 28 209 235 189 245 0.86 Ankyrin repeats (many copies) Ank PF00023.30 32 AAFL01000019_00001 - 304 0.00044 20.6 0.0 1 3 0.019 69 4.1 0.0 10 25 142 158 132 166 0.80 Ankyrin repeat Ank PF00023.30 32 AAFL01000019_00001 - 304 0.00044 20.6 0.0 2 3 0.0042 15 6.2 0.0 2 31 168 198 167 199 0.87 Ankyrin repeat Ank PF00023.30 32 AAFL01000019_00001 - 304 0.00044 20.6 0.0 3 3 0.0051 18 6.0 0.0 15 28 221 235 206 238 0.69 Ankyrin repeat Ank_5 PF13857.6 56 AAFL01000019_00001 - 304 0.066 13.5 0.0 1 3 0.59 2.1e+03 -0.8 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000019_00001 - 304 0.066 13.5 0.0 2 3 0.025 89 3.6 0.0 23 54 141 173 139 175 0.77 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000019_00001 - 304 0.066 13.5 0.0 3 3 0.0063 22 5.5 0.0 15 43 179 207 173 210 0.81 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 AAFL01000019_00002 - 573 2.8e-07 30.8 0.0 1 4 1.3 1.2e+04 -3.3 0.2 43 74 260 291 257 302 0.68 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 AAFL01000019_00002 - 573 2.8e-07 30.8 0.0 2 4 0.31 2.8e+03 -1.3 1.0 37 64 338 366 335 373 0.73 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 AAFL01000019_00002 - 573 2.8e-07 30.8 0.0 3 4 0.56 5e+03 -2.1 0.2 12 29 378 395 364 399 0.53 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 AAFL01000019_00002 - 573 2.8e-07 30.8 0.0 4 4 3.1e-11 2.8e-07 30.8 0.0 18 84 427 495 403 497 0.76 Restriction endonuclease fold toxin 7 VRR_NUC PF08774.11 108 AAFL01000019_00002 - 573 0.027 14.6 0.0 1 1 1e-05 0.093 12.8 0.0 37 96 421 477 379 484 0.73 VRR-NUC domain Ank_3 PF13606.6 31 AAFL01000019_00003 - 313 1.4e-10 40.5 0.2 1 4 0.015 55 4.8 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000019_00003 - 313 1.4e-10 40.5 0.2 2 4 0.026 92 4.1 0.0 10 29 142 160 134 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000019_00003 - 313 1.4e-10 40.5 0.2 3 4 8e-07 0.0029 18.0 0.0 2 30 168 195 167 196 0.95 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000019_00003 - 313 1.4e-10 40.5 0.2 4 4 0.0017 6.1 7.7 0.0 1 30 206 235 206 236 0.91 Ankyrin repeat Ank_2 PF12796.7 83 AAFL01000019_00003 - 313 8.2e-09 35.9 0.0 1 2 0.54 1.9e+03 -0.5 0.0 4 18 74 92 70 122 0.55 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 AAFL01000019_00003 - 313 8.2e-09 35.9 0.0 2 2 1.5e-11 5.5e-08 33.3 0.0 5 80 142 235 138 238 0.79 Ankyrin repeats (3 copies) Ank_4 PF13637.6 55 AAFL01000019_00003 - 313 1.1e-05 25.9 0.1 1 3 0.84 3e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000019_00003 - 313 1.1e-05 25.9 0.1 2 3 2.9e-07 0.001 19.6 0.0 13 55 146 188 133 188 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000019_00003 - 313 1.1e-05 25.9 0.1 3 3 0.071 2.6e+02 2.4 0.0 3 28 209 235 206 244 0.82 Ankyrin repeats (many copies) Ank PF00023.30 32 AAFL01000019_00003 - 313 5.2e-05 23.5 0.0 1 3 0.022 78 4.0 0.0 10 25 142 158 130 165 0.82 Ankyrin repeat Ank PF00023.30 32 AAFL01000019_00003 - 313 5.2e-05 23.5 0.0 2 3 0.00048 1.7 9.2 0.0 2 31 168 198 167 199 0.87 Ankyrin repeat Ank PF00023.30 32 AAFL01000019_00003 - 313 5.2e-05 23.5 0.0 3 3 0.0049 18 6.0 0.0 15 28 221 235 206 238 0.69 Ankyrin repeat Ank_5 PF13857.6 56 AAFL01000019_00003 - 313 0.028 14.8 0.1 1 4 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000019_00003 - 313 0.028 14.8 0.1 2 4 0.012 42 4.6 0.0 23 54 141 173 139 174 0.87 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000019_00003 - 313 0.028 14.8 0.1 3 4 0.00038 1.4 9.4 0.0 11 46 163 198 153 209 0.81 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000019_00003 - 313 0.028 14.8 0.1 4 4 2.5 9.1e+03 -2.8 0.0 34 53 226 243 222 244 0.56 Ankyrin repeats (many copies) Phage_GPD PF05954.11 304 AAFL01000019_00004 - 882 1.1e-17 64.3 0.0 1 1 3e-21 1.8e-17 63.6 0.0 23 281 74 360 45 376 0.74 Phage late control gene D protein (GPD) DUF2345 PF10106.9 151 AAFL01000019_00004 - 882 0.01 15.7 1.7 1 1 4.8e-06 0.029 14.2 1.7 28 132 775 874 772 878 0.84 Uncharacterized protein conserved in bacteria (DUF2345) Gp5_C PF06715.12 24 AAFL01000019_00004 - 882 0.013 15.6 4.6 1 4 3.2e-05 0.19 11.9 0.1 3 24 657 678 655 686 0.67 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 AAFL01000019_00004 - 882 0.013 15.6 4.6 2 4 0.12 7.2e+02 0.7 0.0 13 24 731 742 730 742 0.89 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 AAFL01000019_00004 - 882 0.013 15.6 4.6 3 4 0.37 2.2e+03 -0.8 0.0 1 18 742 760 742 761 0.83 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 AAFL01000019_00004 - 882 0.013 15.6 4.6 4 4 0.13 7.8e+02 0.6 0.1 2 23 752 773 751 774 0.81 Gp5 C-terminal repeat (3 copies) T6SS_TssG PF06996.11 299 AAFL01000019_00005 - 302 1.9e-47 161.9 0.0 1 1 1.2e-51 2.2e-47 161.8 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG T6SS_TssF PF05947.12 603 AAFL01000019_00006 - 573 2.3e-110 369.9 0.0 1 1 1.5e-114 2.6e-110 369.8 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF GPW_gp25 PF04965.14 95 AAFL01000019_00007 - 130 1.2e-09 37.8 0.0 1 1 2.6e-13 1.5e-09 37.5 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 AAFL01000019_00007 - 130 0.0076 16.1 0.3 1 1 1.6e-06 0.0097 15.8 0.3 93 159 20 87 6 92 0.89 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 AAFL01000019_00007 - 130 0.051 13.0 0.1 1 2 2.1e-05 0.12 11.8 0.1 82 121 5 46 1 64 0.83 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 AAFL01000019_00007 - 130 0.051 13.0 0.1 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 422 AAFL01000019_00008 - 484 1e-169 564.9 0.0 1 1 1.3e-173 1.2e-169 564.6 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 AAFL01000019_00008 - 484 0.096 12.7 0.8 1 3 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 AAFL01000019_00008 - 484 0.096 12.7 0.8 2 3 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 AAFL01000019_00008 - 484 0.096 12.7 0.8 3 3 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 155 AAFL01000019_00009 - 161 1.2e-51 174.6 3.8 1 1 1.5e-55 1.3e-51 174.4 3.8 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 AAFL01000019_00009 - 161 0.082 11.5 0.0 1 1 1.1e-05 0.099 11.2 0.0 171 227 55 111 40 127 0.90 Chitin synthase T6SS_VasJ PF16989.5 255 AAFL01000019_00010 - 415 1.2e-12 47.9 0.0 1 1 2.9e-16 1.7e-12 47.3 0.0 3 153 176 323 174 408 0.84 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 AAFL01000019_00010 - 415 0.00014 22.0 0.2 1 2 1.3e-07 0.0008 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 AAFL01000019_00010 - 415 0.00014 22.0 0.2 2 2 0.24 1.4e+03 -0.6 0.0 47 71 185 209 162 212 0.83 ImpA, N-terminal, type VI secretion system PX PF00787.24 113 AAFL01000019_00010 - 415 0.074 13.0 14.5 1 3 0.00019 1.1 9.2 2.4 31 111 33 130 20 131 0.67 PX domain PX PF00787.24 113 AAFL01000019_00010 - 415 0.074 13.0 14.5 2 3 0.00063 3.8 7.5 0.2 16 112 155 275 132 276 0.68 PX domain PX PF00787.24 113 AAFL01000019_00010 - 415 0.074 13.0 14.5 3 3 0.039 2.3e+02 1.8 0.7 22 97 316 396 296 404 0.70 PX domain T6SS-SciN PF12790.7 120 AAFL01000019_00011 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 428 AAFL01000019_00012 - 465 1.3e-112 376.6 0.0 1 1 8.6e-117 1.5e-112 376.4 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 205 AAFL01000019_00013 - 257 3.6e-35 121.5 0.0 1 1 2.3e-39 4.2e-35 121.4 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_HCP PF05638.12 129 AAFL01000019_00014 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 259 AAFL01000019_00015 - 1175 6.2e-41 140.5 0.0 1 1 4.1e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 AAFL01000019_00015 - 1175 5.9e-40 137.0 0.5 1 1 4.1e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 AAFL01000019_00015 - 1175 3.5e-26 92.4 2.0 1 1 2.1e-29 5.3e-26 91.8 2.0 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 AAFL01000019_00015 - 1175 0.0003 20.7 0.0 1 2 8.9e-06 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 AAFL01000019_00015 - 1175 0.0003 20.7 0.0 2 2 0.047 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 AAFL01000019_00015 - 1175 0.0011 19.0 0.1 1 2 1.7e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 AAFL01000019_00015 - 1175 0.0011 19.0 0.1 2 2 4.1 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 AAFL01000019_00015 - 1175 0.0036 16.9 5.2 1 3 1.4e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 AAFL01000019_00015 - 1175 0.0036 16.9 5.2 2 3 0.078 2e+02 1.5 0.1 41 78 451 488 431 588 0.81 O-Antigen ligase Wzy_C PF04932.15 155 AAFL01000019_00015 - 1175 0.0036 16.9 5.2 3 3 0.076 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 AAFL01000019_00015 - 1175 0.055 13.2 0.1 1 2 0.00017 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 AAFL01000019_00015 - 1175 0.055 13.2 0.1 2 2 0.72 1.8e+03 -1.3 0.0 22 37 841 856 831 873 0.75 P-loop containing region of AAA domain FHA PF00498.26 69 AAFL01000019_00016 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 AAFL01000019_00016 - 299 0.0018 18.5 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 AAFL01000019_00016 - 299 0.0018 18.5 0.0 2 2 2 1.2e+04 -3.3 0.0 31 56 199 224 199 226 0.79 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 AAFL01000019_00016 - 299 0.066 13.6 2.7 1 2 0.047 2.8e+02 2.0 0.1 18 57 107 146 105 149 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 AAFL01000019_00016 - 299 0.066 13.6 2.7 2 2 0.00011 0.66 10.4 0.7 21 80 151 210 146 215 0.91 Ferredoxin-fold anticodon binding domain APH PF01636.23 240 AAFL01000021_00001 - 151 3.6e-07 30.4 0.0 1 1 2.2e-11 3.9e-07 30.2 0.0 99 220 5 123 2 144 0.82 Phosphotransferase enzyme family Peptidase_C15 PF01470.17 202 AAFL01000021_00002 - 139 1.3e-51 175.6 0.1 1 1 8.3e-56 1.5e-51 175.5 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase APH PF01636.23 240 AAFL01000021_00003 - 305 8.7e-24 84.8 0.0 1 1 3.6e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 AAFL01000021_00003 - 305 2.9e-06 26.7 0.1 1 1 2.8e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 AAFL01000021_00003 - 305 0.00018 21.2 0.0 1 1 7.5e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 AAFL01000021_00003 - 305 0.014 14.8 0.0 1 1 5.5e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 AAFL01000021_00003 - 305 0.044 13.4 0.4 1 1 2e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family AAA_18 PF13238.6 130 AAFL01000021_00004 - 181 3.4e-14 53.5 0.0 1 1 1e-16 4.5e-14 53.1 0.0 1 124 7 135 7 141 0.78 AAA domain CPT PF07931.12 174 AAFL01000021_00004 - 181 5e-10 39.5 0.0 1 1 2.2e-12 9.9e-10 38.5 0.0 1 172 4 172 4 174 0.82 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 AAFL01000021_00004 - 181 1.2e-09 38.5 0.0 1 1 4e-12 1.8e-09 37.9 0.0 2 136 7 144 6 146 0.80 AAA domain Zeta_toxin PF06414.12 199 AAFL01000021_00004 - 181 1.5e-08 34.1 0.0 1 1 7.1e-11 3.2e-08 33.1 0.0 18 162 6 140 2 173 0.80 Zeta toxin AAA_28 PF13521.6 163 AAFL01000021_00004 - 181 2.9e-06 27.6 0.1 1 2 2.5e-08 1.1e-05 25.7 0.0 2 65 7 74 6 85 0.72 AAA domain AAA_28 PF13521.6 163 AAFL01000021_00004 - 181 2.9e-06 27.6 0.1 2 2 3.3 1.5e+03 -0.7 0.1 140 140 136 136 96 177 0.51 AAA domain AAA PF00004.29 132 AAFL01000021_00004 - 181 5.6e-06 26.8 0.0 1 2 1.2e-07 5.5e-05 23.6 0.0 2 25 8 31 7 84 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 AAFL01000021_00004 - 181 5.6e-06 26.8 0.0 2 2 1.1 4.8e+02 1.1 0.0 104 131 108 135 92 136 0.83 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 137 AAFL01000021_00004 - 181 2e-05 24.9 0.0 1 2 1.3e-07 5.9e-05 23.4 0.0 4 43 3 42 1 89 0.84 AAA domain AAA_22 PF13401.6 137 AAFL01000021_00004 - 181 2e-05 24.9 0.0 2 2 3.7 1.6e+03 -0.7 0.0 62 82 121 140 90 178 0.65 AAA domain AAA_14 PF13173.6 131 AAFL01000021_00004 - 181 5.9e-05 23.1 0.0 1 1 2e-07 8.8e-05 22.5 0.0 2 127 4 141 3 145 0.74 AAA domain AAA_17 PF13207.6 136 AAFL01000021_00004 - 181 0.00012 22.5 0.1 1 1 1.2e-06 0.00052 20.5 0.1 1 128 10 131 10 139 0.74 AAA domain AAA_16 PF13191.6 170 AAFL01000021_00004 - 181 0.00031 21.2 0.0 1 1 9.6e-07 0.00043 20.7 0.0 22 61 2 42 1 127 0.81 AAA ATPase domain DUF2075 PF09848.9 363 AAFL01000021_00004 - 181 0.0012 18.2 0.2 1 1 3.9e-06 0.0018 17.6 0.1 2 27 5 32 4 68 0.83 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 146 AAFL01000021_00004 - 181 0.0017 18.7 0.0 1 1 7.9e-06 0.0035 17.7 0.0 9 39 3 33 1 49 0.84 AAA domain KTI12 PF08433.10 272 AAFL01000021_00004 - 181 0.0019 17.7 0.0 1 2 8.5e-06 0.0038 16.7 0.0 3 42 6 44 5 87 0.77 Chromatin associated protein KTI12 KTI12 PF08433.10 272 AAFL01000021_00004 - 181 0.0019 17.7 0.0 2 2 4.9 2.2e+03 -2.2 0.0 263 263 137 137 104 174 0.57 Chromatin associated protein KTI12 AAA_30 PF13604.6 192 AAFL01000021_00004 - 181 0.0023 17.7 0.2 1 1 8.7e-06 0.0039 16.9 0.2 17 40 3 26 1 39 0.84 AAA domain ABC_tran PF00005.27 137 AAFL01000021_00004 - 181 0.0029 18.1 0.1 1 1 6.6e-06 0.003 18.1 0.0 9 51 2 43 1 170 0.86 ABC transporter AAA_24 PF13479.6 197 AAFL01000021_00004 - 181 0.0039 16.9 0.1 1 1 9.4e-06 0.0042 16.8 0.1 3 32 5 39 3 163 0.82 AAA domain APS_kinase PF01583.20 158 AAFL01000021_00004 - 181 0.004 17.1 0.0 1 2 0.00011 0.049 13.5 0.0 1 79 3 84 3 124 0.66 Adenylylsulphate kinase APS_kinase PF01583.20 158 AAFL01000021_00004 - 181 0.004 17.1 0.0 2 2 0.38 1.7e+02 2.0 0.0 44 74 118 148 97 155 0.84 Adenylylsulphate kinase TIP49 PF06068.13 351 AAFL01000021_00004 - 181 0.0061 15.8 0.2 1 2 4.3e-05 0.019 14.2 0.0 50 75 4 29 1 46 0.81 TIP49 P-loop domain TIP49 PF06068.13 351 AAFL01000021_00004 - 181 0.0061 15.8 0.2 2 2 1.6 7e+02 -0.8 0.1 148 178 126 156 105 172 0.75 TIP49 P-loop domain ATPase PF06745.13 231 AAFL01000021_00004 - 181 0.0075 15.6 0.7 1 2 3.6e-05 0.016 14.6 0.1 18 38 3 23 1 39 0.87 KaiC ATPase PF06745.13 231 AAFL01000021_00004 - 181 0.0075 15.6 0.7 2 2 2.5 1.1e+03 -1.3 0.1 98 129 123 159 100 175 0.49 KaiC T2SSE PF00437.20 273 AAFL01000021_00004 - 181 0.011 14.8 0.0 1 1 3.7e-05 0.017 14.2 0.0 130 154 5 29 1 71 0.87 Type II/IV secretion system protein NTPase_1 PF03266.15 168 AAFL01000021_00004 - 181 0.012 15.5 0.5 1 2 7.6e-05 0.034 14.1 0.2 2 22 7 27 6 37 0.88 NTPase NTPase_1 PF03266.15 168 AAFL01000021_00004 - 181 0.012 15.5 0.5 2 2 2.4 1.1e+03 -0.6 0.0 117 136 99 118 59 172 0.59 NTPase Viral_helicase1 PF01443.18 234 AAFL01000021_00004 - 181 0.017 14.9 0.0 1 1 6.1e-05 0.028 14.2 0.0 1 60 7 75 7 88 0.65 Viral (Superfamily 1) RNA helicase ATPase_2 PF01637.18 233 AAFL01000021_00004 - 181 0.018 14.9 0.1 1 2 0.0023 1 9.2 0.0 19 54 3 38 1 66 0.80 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 AAFL01000021_00004 - 181 0.018 14.9 0.1 2 2 0.092 41 4.0 0.1 48 97 102 150 92 179 0.53 ATPase domain predominantly from Archaea SRP54 PF00448.22 196 AAFL01000021_00004 - 181 0.019 14.6 0.0 1 1 8.1e-05 0.036 13.7 0.0 3 40 6 42 4 46 0.81 SRP54-type protein, GTPase domain AAA_11 PF13086.6 261 AAFL01000021_00004 - 181 0.022 14.6 0.0 1 2 0.00015 0.069 12.9 0.0 16 41 3 28 1 74 0.83 AAA domain AAA_11 PF13086.6 261 AAFL01000021_00004 - 181 0.022 14.6 0.0 2 2 1.7 7.6e+02 -0.3 0.0 96 122 116 151 81 178 0.53 AAA domain Ploopntkinase1 PF18748.1 196 AAFL01000021_00004 - 181 0.022 14.3 0.0 1 2 0.21 94 2.4 0.0 16 41 3 29 1 41 0.78 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 AAFL01000021_00004 - 181 0.022 14.3 0.0 2 2 0.001 0.46 10.0 0.0 93 164 72 143 56 154 0.81 P-loop Nucleotide Kinase1 RuvB_N PF05496.12 159 AAFL01000021_00004 - 181 0.023 14.5 0.1 1 2 0.00018 0.08 12.7 0.0 36 59 7 30 3 46 0.86 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 AAFL01000021_00004 - 181 0.023 14.5 0.1 2 2 3.3 1.5e+03 -1.2 0.0 96 114 111 129 104 167 0.72 Holliday junction DNA helicase RuvB P-loop domain MKT1_N PF12247.8 90 AAFL01000021_00004 - 181 0.027 14.8 0.0 1 1 0.00022 0.1 13.0 0.0 14 52 39 75 35 149 0.89 Temperature dependent protein affecting M2 dsRNA replication AAA_25 PF13481.6 194 AAFL01000021_00004 - 181 0.028 14.0 0.1 1 2 0.00016 0.071 12.7 0.1 32 54 3 25 1 28 0.88 AAA domain AAA_25 PF13481.6 194 AAFL01000021_00004 - 181 0.028 14.0 0.1 2 2 7.7 3.4e+03 -2.6 0.0 119 174 57 74 31 84 0.49 AAA domain DnaB_C PF03796.15 255 AAFL01000021_00004 - 181 0.039 13.3 0.4 1 2 0.00019 0.084 12.2 0.0 17 47 2 32 1 41 0.84 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 AAFL01000021_00004 - 181 0.039 13.3 0.4 2 2 2.8 1.3e+03 -1.5 0.1 84 91 136 143 98 179 0.39 DnaB-like helicase C terminal domain NB-ARC PF00931.22 252 AAFL01000021_00004 - 181 0.04 13.1 0.0 1 1 0.00016 0.073 12.3 0.0 21 47 5 30 1 46 0.84 NB-ARC domain Hydin_ADK PF17213.3 198 AAFL01000021_00004 - 181 0.041 14.2 1.1 1 2 0.00012 0.054 13.8 0.2 2 22 7 27 6 31 0.92 Hydin Adenylate kinase-like domain Hydin_ADK PF17213.3 198 AAFL01000021_00004 - 181 0.041 14.2 1.1 2 2 9.9 4.4e+03 -2.3 0.0 91 91 147 147 108 177 0.44 Hydin Adenylate kinase-like domain NACHT PF05729.12 166 AAFL01000021_00004 - 181 0.042 13.8 0.0 1 1 0.00016 0.07 13.0 0.0 1 31 5 35 5 74 0.75 NACHT domain ArsA_ATPase PF02374.15 305 AAFL01000021_00004 - 181 0.047 12.9 0.1 1 2 0.00022 0.099 11.8 0.0 2 44 5 46 4 84 0.80 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 AAFL01000021_00004 - 181 0.047 12.9 0.1 2 2 4.4 2e+03 -2.3 0.0 162 172 137 147 110 174 0.48 Anion-transporting ATPase Rad17 PF03215.15 186 AAFL01000021_00004 - 181 0.051 13.5 0.0 1 2 0.00036 0.16 11.9 0.0 45 69 4 28 1 41 0.87 Rad17 P-loop domain Rad17 PF03215.15 186 AAFL01000021_00004 - 181 0.051 13.5 0.0 2 2 3.5 1.5e+03 -1.1 0.0 113 146 110 145 96 169 0.62 Rad17 P-loop domain RNA_helicase PF00910.22 107 AAFL01000021_00004 - 181 0.055 13.9 0.0 1 1 0.00021 0.095 13.1 0.0 1 35 7 42 7 77 0.71 RNA helicase Sigma54_activat PF00158.26 168 AAFL01000021_00004 - 181 0.056 13.2 0.0 1 1 0.00022 0.1 12.3 0.0 25 67 7 56 1 89 0.73 Sigma-54 interaction domain AAA_7 PF12775.7 181 AAFL01000021_00004 - 181 0.069 12.7 0.5 1 2 0.00027 0.12 11.9 0.0 31 64 2 35 1 47 0.83 P-loop containing dynein motor region AAA_7 PF12775.7 181 AAFL01000021_00004 - 181 0.069 12.7 0.5 2 2 9.7 4.3e+03 -3.0 0.0 65 82 156 173 132 176 0.64 P-loop containing dynein motor region IstB_IS21 PF01695.17 178 AAFL01000021_00004 - 181 0.076 12.7 0.1 1 2 0.00038 0.17 11.6 0.0 48 70 5 27 1 47 0.84 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 AAFL01000021_00004 - 181 0.076 12.7 0.1 2 2 7.2 3.2e+03 -2.3 0.0 72 101 100 130 97 137 0.52 IstB-like ATP binding protein PhoH PF02562.16 205 AAFL01000021_00004 - 181 0.096 12.1 0.1 1 1 0.00041 0.18 11.2 0.1 18 43 3 28 1 36 0.81 PhoH-like protein TnpV PF14198.6 112 AAFL01000021_00005 - 114 3.3e-41 139.8 0.5 1 1 2e-45 3.6e-41 139.6 0.5 1 112 4 112 4 112 0.99 Transposon-encoded protein TnpV DUF4368 PF14287.6 67 AAFL01000021_00006 - 628 3.6e-23 81.6 2.1 1 1 2.6e-26 1.2e-22 80.0 2.1 2 66 472 537 471 538 0.92 Domain of unknown function (DUF4368) Recombinase PF07508.13 104 AAFL01000021_00006 - 628 3.6e-22 78.7 0.7 1 2 1.7 7.8e+03 -2.7 0.0 8 32 133 157 132 173 0.80 Recombinase Recombinase PF07508.13 104 AAFL01000021_00006 - 628 3.6e-22 78.7 0.7 2 2 3.1e-25 1.4e-21 76.9 0.2 1 101 183 303 183 305 0.96 Recombinase Resolvase PF00239.21 146 AAFL01000021_00006 - 628 5.2e-21 75.3 0.1 1 3 1.2e-24 5.2e-21 75.3 0.1 2 146 9 161 8 161 0.90 Resolvase, N terminal domain Resolvase PF00239.21 146 AAFL01000021_00006 - 628 5.2e-21 75.3 0.1 2 3 0.12 5.4e+02 0.6 2.3 21 62 380 422 375 521 0.78 Resolvase, N terminal domain Resolvase PF00239.21 146 AAFL01000021_00006 - 628 5.2e-21 75.3 0.1 3 3 0.81 3.6e+03 -2.1 1.6 123 142 579 598 549 602 0.65 Resolvase, N terminal domain Zn_ribbon_recom PF13408.6 58 AAFL01000021_00006 - 628 1.4e-12 47.9 2.6 1 1 9.7e-16 4.3e-12 46.3 2.6 1 58 318 380 318 380 0.84 Recombinase zinc beta ribbon domain IMS PF00817.20 150 AAFL01000021_00007 - 126 1.1e-06 28.7 0.1 1 1 1.7e-10 3e-06 27.3 0.1 1 80 10 122 10 126 0.71 impB/mucB/samB family HTH_3 PF01381.22 55 AAFL01000021_00009 - 44 8.4e-07 29.0 0.0 1 1 9.1e-10 9.1e-07 28.9 0.0 1 33 9 41 9 44 0.95 Helix-turn-helix HTH_26 PF13443.6 63 AAFL01000021_00009 - 44 0.00022 21.6 0.0 1 1 2.5e-07 0.00024 21.4 0.0 2 34 9 41 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 AAFL01000021_00009 - 44 0.0007 19.1 0.2 1 1 9.3e-07 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding HTH_19 PF12844.7 65 AAFL01000021_00009 - 44 0.0012 18.8 0.0 1 1 1.3e-06 0.0013 18.8 0.0 4 37 9 42 7 44 0.91 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 AAFL01000021_00009 - 44 0.002 18.0 0.1 1 1 2.3e-06 0.0023 17.7 0.1 1 32 9 41 9 43 0.84 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 AAFL01000021_00009 - 44 0.002 17.9 0.0 1 1 3.4e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 AAFL01000021_00009 - 44 0.0035 17.4 0.3 1 1 5.2e-06 0.0052 16.8 0.3 25 46 1 22 1 41 0.89 ENT domain HTH_31 PF13560.6 64 AAFL01000021_00009 - 44 0.0089 16.4 0.0 1 1 1.1e-05 0.011 16.1 0.0 12 38 15 41 9 43 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 AAFL01000021_00009 - 44 0.009 15.6 0.2 1 1 1.3e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 AAFL01000021_00009 - 44 0.0098 16.2 0.0 1 1 1.2e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 AAFL01000021_00009 - 44 0.013 14.9 0.0 1 1 1.7e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 AAFL01000021_00009 - 44 0.019 14.9 0.1 1 1 2.2e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 AAFL01000021_00009 - 44 0.02 14.7 0.0 1 1 2.4e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain HTH_AsnC-type PF13404.6 42 AAFL01000021_00009 - 44 0.029 14.2 0.0 1 1 3.1e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain Phage_CI_repr PF07022.13 65 AAFL01000021_00009 - 44 0.03 14.4 0.0 1 1 3.3e-05 0.033 14.3 0.0 3 33 9 38 7 41 0.84 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4 PF04545.16 50 AAFL01000021_00009 - 44 0.034 13.7 0.0 1 1 4.1e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 HTH_17 PF12728.7 51 AAFL01000021_00009 - 44 0.081 13.1 0.1 1 2 0.016 16 5.8 0.0 4 16 9 21 9 26 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 AAFL01000021_00009 - 44 0.081 13.1 0.1 2 2 0.0076 7.6 6.8 0.0 6 26 22 42 19 44 0.78 Helix-turn-helix domain MerR PF00376.23 38 AAFL01000021_00009 - 44 0.085 12.7 0.0 1 2 0.022 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 AAFL01000021_00009 - 44 0.085 12.7 0.0 2 2 0.0094 9.3 6.1 0.0 4 17 22 35 21 41 0.84 MerR family regulatory protein DUF5601 PF18151.1 65 AAFL01000021_00011 - 118 0.038 14.3 0.2 1 1 3.5e-06 0.063 13.6 0.2 14 55 5 47 1 48 0.88 Domain of unknown function (DUF5601) CCDC-167 PF15188.6 84 AAFL01000021_00013 - 137 0.002 18.4 0.4 1 1 7.3e-07 0.0033 17.7 0.4 37 79 77 119 21 121 0.77 Coiled-coil domain-containing protein 167 DUF3461 PF11944.8 125 AAFL01000021_00013 - 137 0.015 15.4 3.5 1 1 8.9e-06 0.04 14.0 3.5 23 124 7 100 2 101 0.83 Protein of unknown function (DUF3461) HSBP1 PF06825.12 51 AAFL01000021_00013 - 137 0.033 14.0 0.1 1 2 0.018 80 3.2 0.0 28 43 61 76 46 78 0.86 Heat shock factor binding protein 1 HSBP1 PF06825.12 51 AAFL01000021_00013 - 137 0.033 14.0 0.1 2 2 0.00049 2.2 8.2 0.0 17 42 79 104 77 109 0.83 Heat shock factor binding protein 1 Streptin-Immun PF11083.8 93 AAFL01000021_00013 - 137 0.052 14.0 0.6 1 2 0.23 1.1e+03 0.2 0.1 63 82 40 59 20 68 0.62 Lantibiotic streptin immunity protein Streptin-Immun PF11083.8 93 AAFL01000021_00013 - 137 0.052 14.0 0.6 2 2 4.5e-05 0.2 12.1 0.1 42 81 68 107 63 115 0.87 Lantibiotic streptin immunity protein YafQ_toxin PF15738.5 88 AAFL01000021_00018 - 106 1.6e-26 92.4 3.7 1 1 4.7e-30 2.1e-26 92.0 3.7 1 87 20 106 20 106 0.95 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 AAFL01000021_00018 - 106 1.9e-06 28.4 0.6 1 1 4.9e-10 2.2e-06 28.2 0.6 6 89 23 105 18 106 0.80 ParE toxin of type II toxin-antitoxin system, parDE Ribosomal_S2 PF00318.20 215 AAFL01000021_00018 - 106 0.0042 16.3 0.9 1 1 1.2e-06 0.0053 16.0 0.9 98 164 27 94 21 99 0.83 Ribosomal protein S2 ParE-like_toxin PF15781.5 87 AAFL01000021_00018 - 106 0.017 15.1 1.6 1 1 7.8e-06 0.035 14.1 1.6 5 82 26 105 22 106 0.79 ParE-like toxin of type II bacterial toxin-antitoxin system WGR PF05406.15 80 AAFL01000021_00023 - 75 2.4e-07 30.7 0.6 1 1 3.1e-11 2.7e-07 30.5 0.6 3 73 4 74 2 75 0.87 WGR domain Cadherin_pro PF08758.11 90 AAFL01000021_00023 - 75 0.017 15.3 0.0 1 1 2.3e-06 0.021 15.0 0.0 15 45 26 56 12 62 0.81 Cadherin prodomain like FlaC_arch PF05377.11 55 AAFL01000021_00024 - 76 0.0083 16.5 2.3 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 AAFL01000021_00024 - 76 0.0083 16.5 2.3 2 2 4.6e-07 0.0083 16.5 2.3 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) Phage_integrase PF00589.22 172 AAFL01000021_00025 - 312 5.1e-24 85.0 0.5 1 1 2.8e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 AAFL01000021_00025 - 312 2.3e-05 24.6 3.9 1 3 1.4e-07 0.00043 20.5 1.9 1 79 16 99 16 99 0.88 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 AAFL01000021_00025 - 312 2.3e-05 24.6 3.9 2 3 0.0015 4.4 7.7 0.0 13 35 80 102 76 109 0.89 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 AAFL01000021_00025 - 312 2.3e-05 24.6 3.9 3 3 3.1 9.3e+03 -3.0 0.0 36 54 123 141 114 151 0.54 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 AAFL01000021_00025 - 312 0.00011 22.4 4.6 1 3 3.8e-08 0.00011 22.4 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 AAFL01000021_00025 - 312 0.00011 22.4 4.6 2 3 0.91 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 AAFL01000021_00025 - 312 0.00011 22.4 4.6 3 3 1.8 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phyto-Amp PF15438.6 195 AAFL01000021_00025 - 312 0.0094 15.8 0.3 1 1 5.8e-06 0.017 14.9 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma YbjN PF10722.9 127 AAFL01000021_00025 - 312 0.011 15.8 0.3 1 2 0.00017 0.51 10.4 0.1 38 77 96 135 93 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 AAFL01000021_00025 - 312 0.011 15.8 0.3 2 2 0.04 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator Phage_int_SAM_3 PF14659.6 58 AAFL01000021_00025 - 312 0.028 14.7 3.2 1 1 3.6e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain SprT-like PF10263.9 113 AAFL01000021_00028 - 424 0.056 13.3 0.1 1 1 1.5e-05 0.13 12.1 0.1 58 93 316 353 294 360 0.81 SprT-like family Peptidase_M78 PF06114.13 123 AAFL01000021_00028 - 424 0.077 12.9 0.1 1 1 2e-05 0.18 11.8 0.1 6 63 288 347 285 365 0.76 IrrE N-terminal-like domain DZR PF12773.7 49 AAFL01000025_00003 - 114 0.039 14.0 0.3 1 1 6.1e-06 0.054 13.5 0.3 13 37 5 38 2 43 0.91 Double zinc ribbon DiS_P_DiS PF06750.13 84 AAFL01000025_00003 - 114 0.04 14.1 0.4 1 1 8.6e-06 0.077 13.1 0.4 29 72 6 49 2 59 0.83 Bacterial Peptidase A24 N-terminal domain Myc-LZ PF02344.15 31 AAFL01000025_00004 - 34 0.045 13.9 0.4 1 1 3e-06 0.054 13.6 0.4 8 18 15 25 14 27 0.94 Myc leucine zipper domain DivIC PF04977.15 80 AAFL01000025_00005 - 635 0.0014 18.3 0.2 1 5 8e-08 0.0014 18.3 0.2 23 78 35 90 31 92 0.94 Septum formation initiator DivIC PF04977.15 80 AAFL01000025_00005 - 635 0.0014 18.3 0.2 2 5 0.19 3.3e+03 -2.1 3.7 24 50 259 285 248 295 0.58 Septum formation initiator DivIC PF04977.15 80 AAFL01000025_00005 - 635 0.0014 18.3 0.2 3 5 0.48 8.6e+03 -3.4 0.3 40 57 376 392 375 393 0.79 Septum formation initiator DivIC PF04977.15 80 AAFL01000025_00005 - 635 0.0014 18.3 0.2 4 5 0.4 7.1e+03 -3.1 2.3 21 41 439 459 431 484 0.61 Septum formation initiator DivIC PF04977.15 80 AAFL01000025_00005 - 635 0.0014 18.3 0.2 5 5 0.17 3.1e+03 -2.0 0.1 16 35 614 633 609 635 0.77 Septum formation initiator Prok-TraM PF09228.10 102 AAFL01000025_00007 - 254 0.072 13.5 0.0 1 1 9.6e-06 0.17 12.2 0.0 30 94 8 72 2 76 0.92 Prokaryotic Transcriptional repressor TraM Y1_Tnp PF01797.16 121 AAFL01000026_00001 - 158 8.8e-37 125.9 2.5 1 1 6.8e-41 1.2e-36 125.4 2.5 2 121 13 133 12 133 0.95 Transposase IS200 like PcfJ PF14284.6 144 AAFL01000026_00002 - 112 7.7e-06 25.9 1.5 1 1 1.4e-09 8.6e-06 25.7 1.5 43 135 4 96 1 105 0.80 PcfJ-like protein NmrA PF05368.13 233 AAFL01000026_00002 - 112 0.0093 15.5 0.3 1 1 1.9e-06 0.012 15.2 0.3 121 224 12 108 7 111 0.77 NmrA-like family DUF4060 PF13269.6 73 AAFL01000026_00002 - 112 0.085 12.9 0.1 1 2 0.0092 55 3.9 0.0 19 38 32 51 14 57 0.88 Protein of unknown function (DUF4060) DUF4060 PF13269.6 73 AAFL01000026_00002 - 112 0.085 12.9 0.1 2 2 0.0009 5.4 7.2 0.0 34 56 61 83 55 89 0.88 Protein of unknown function (DUF4060) GTP_EFTU PF00009.27 194 AAFL01000026_00004 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 AAFL01000026_00004 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 AAFL01000026_00004 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 AAFL01000026_00004 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 AAFL01000026_00004 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 AAFL01000026_00004 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 AAFL01000026_00004 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 AAFL01000026_00004 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 AAFL01000026_00004 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 AAFL01000026_00004 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family DUF5442 PF17514.2 107 AAFL01000026_00005 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 AAFL01000026_00005 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) AAA_31 PF13614.6 177 AAFL01000027_00001 - 185 0.00011 22.2 0.6 1 2 2.3e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 AAFL01000027_00001 - 185 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 AAFL01000027_00001 - 185 0.0021 18.1 0.8 1 1 3.1e-06 0.019 15.0 0.8 1 55 3 89 3 163 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 AAFL01000027_00001 - 185 0.014 14.8 0.0 1 1 3.2e-06 0.019 14.4 0.0 17 109 69 171 61 177 0.77 short chain dehydrogenase Put_DNA-bind_N PF06971.13 49 AAFL01000027_00003 - 141 0.034 14.2 0.0 1 1 3.2e-06 0.058 13.4 0.0 11 34 4 27 3 30 0.94 Putative DNA-binding protein N-terminus DUF2974 PF11187.8 224 AAFL01000027_00007 - 202 0.00072 19.2 0.1 1 1 1.2e-07 0.0011 18.5 0.1 7 94 100 196 95 198 0.73 Protein of unknown function (DUF2974) DUF676 PF05057.14 219 AAFL01000027_00007 - 202 0.044 13.3 0.0 1 1 9.6e-06 0.086 12.3 0.0 63 91 170 198 130 200 0.73 Putative serine esterase (DUF676) DUF2239 PF09998.9 184 AAFL01000028_00001 - 117 0.081 12.7 0.7 1 1 5.7e-06 0.1 12.4 0.7 22 71 45 92 37 104 0.74 Uncharacterized protein conserved in bacteria (DUF2239) Ank_3 PF13606.6 31 AAFL01000028_00002 - 314 1.1e-09 37.7 0.3 1 4 0.018 63 4.6 0.0 8 26 73 93 71 97 0.83 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000028_00002 - 314 1.1e-09 37.7 0.3 2 4 0.043 1.6e+02 3.4 0.0 12 29 145 161 133 163 0.80 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000028_00002 - 314 1.1e-09 37.7 0.3 3 4 3.6e-06 0.013 16.0 0.0 2 30 169 196 168 197 0.94 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000028_00002 - 314 1.1e-09 37.7 0.3 4 4 0.0014 5.1 8.0 0.0 1 30 207 236 207 237 0.92 Ankyrin repeat Ank_2 PF12796.7 83 AAFL01000028_00002 - 314 4e-08 33.7 0.1 1 2 0.54 1.9e+03 -0.5 0.0 4 18 74 92 70 121 0.56 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 AAFL01000028_00002 - 314 4e-08 33.7 0.1 2 2 7.1e-11 2.6e-07 31.2 0.0 7 80 145 236 139 239 0.77 Ankyrin repeats (3 copies) Ank PF00023.30 32 AAFL01000028_00002 - 314 0.00041 20.7 0.0 1 3 0.024 85 3.9 0.0 12 26 145 160 129 166 0.79 Ankyrin repeat Ank PF00023.30 32 AAFL01000028_00002 - 314 0.00041 20.7 0.0 2 3 0.0043 15 6.2 0.0 3 31 170 199 169 200 0.85 Ankyrin repeat Ank PF00023.30 32 AAFL01000028_00002 - 314 0.00041 20.7 0.0 3 3 0.0046 16 6.1 0.0 15 28 222 236 207 239 0.67 Ankyrin repeat Ank_5 PF13857.6 56 AAFL01000028_00002 - 314 0.0021 18.3 0.1 1 3 2.5 8.9e+03 -2.8 0.0 42 52 50 60 48 61 0.76 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000028_00002 - 314 0.0021 18.3 0.1 2 3 0.62 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000028_00002 - 314 0.0021 18.3 0.1 3 3 8.1e-06 0.029 14.7 0.0 1 47 154 200 143 203 0.93 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000028_00002 - 314 0.0029 18.2 0.1 1 3 1.4 5e+03 -1.7 0.0 10 21 76 89 67 98 0.54 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000028_00002 - 314 0.0029 18.2 0.1 2 3 5.2e-05 0.18 12.4 0.1 14 55 148 189 135 189 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000028_00002 - 314 0.0029 18.2 0.1 3 3 0.094 3.4e+02 2.0 0.0 3 28 210 236 208 239 0.82 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 AAFL01000028_00003 - 599 6.7e-08 32.7 0.0 1 3 0.23 4.2e+03 -1.9 2.0 15 43 364 392 356 395 0.65 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 AAFL01000028_00003 - 599 6.7e-08 32.7 0.0 2 3 3.7e-12 6.7e-08 32.7 0.0 13 84 417 490 398 492 0.81 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 AAFL01000028_00003 - 599 6.7e-08 32.7 0.0 3 3 1 1.8e+04 -4.0 0.7 46 58 499 512 497 524 0.52 Restriction endonuclease fold toxin 7 Ank_2 PF12796.7 83 AAFL01000028_00004 - 315 4e-12 46.6 0.5 1 2 9.6e-08 0.00029 21.4 0.1 27 82 132 199 71 200 0.70 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 AAFL01000028_00004 - 315 4e-12 46.6 0.5 2 2 9.7e-11 2.9e-07 31.0 0.0 7 80 145 237 136 240 0.79 Ankyrin repeats (3 copies) Ank_3 PF13606.6 31 AAFL01000028_00004 - 315 1.4e-10 40.4 0.3 1 4 0.021 63 4.6 0.0 8 26 73 93 71 97 0.83 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000028_00004 - 315 1.4e-10 40.4 0.3 2 4 0.05 1.5e+02 3.5 0.0 12 29 145 161 135 163 0.78 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000028_00004 - 315 1.4e-10 40.4 0.3 3 4 5.6e-07 0.0017 18.7 0.0 1 30 169 197 169 198 0.95 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000028_00004 - 315 1.4e-10 40.4 0.3 4 4 0.0017 5.2 8.0 0.0 1 30 208 237 208 238 0.92 Ankyrin repeat Ank PF00023.30 32 AAFL01000028_00004 - 315 1.4e-05 25.3 0.0 1 3 0.015 44 4.8 0.0 11 26 144 160 132 166 0.69 Ankyrin repeat Ank PF00023.30 32 AAFL01000028_00004 - 315 1.4e-05 25.3 0.0 2 3 0.00025 0.76 10.3 0.0 1 31 169 200 169 201 0.87 Ankyrin repeat Ank PF00023.30 32 AAFL01000028_00004 - 315 1.4e-05 25.3 0.0 3 3 0.0061 18 6.0 0.0 12 28 223 237 208 240 0.69 Ankyrin repeat Ank_4 PF13637.6 55 AAFL01000028_00004 - 315 8.4e-05 23.0 0.2 1 3 1.4 4.3e+03 -1.5 0.0 10 21 76 89 67 102 0.57 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000028_00004 - 315 8.4e-05 23.0 0.2 2 3 6e-06 0.018 15.6 0.1 14 55 148 190 132 190 0.79 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000028_00004 - 315 8.4e-05 23.0 0.2 3 3 0.033 99 3.7 0.0 3 28 211 237 193 240 0.87 Ankyrin repeats (many copies) FAM25 PF15825.5 65 AAFL01000028_00004 - 315 0.0056 17.0 1.3 1 2 0.0008 2.4 8.6 0.2 13 35 108 128 104 130 0.91 FAM25 family FAM25 PF15825.5 65 AAFL01000028_00004 - 315 0.0056 17.0 1.3 2 2 0.0032 9.7 6.6 0.1 21 35 301 315 291 315 0.85 FAM25 family Ank_5 PF13857.6 56 AAFL01000028_00004 - 315 0.095 13.0 0.1 1 4 3 8.9e+03 -2.8 0.0 42 52 50 60 48 61 0.76 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000028_00004 - 315 0.095 13.0 0.1 2 4 0.67 2e+03 -0.7 0.0 26 42 79 96 73 99 0.80 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000028_00004 - 315 0.095 13.0 0.1 3 4 0.14 4.3e+02 1.4 0.0 26 53 145 174 143 176 0.70 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000028_00004 - 315 0.095 13.0 0.1 4 4 0.00092 2.7 8.4 0.0 1 46 154 200 154 203 0.84 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 AAFL01000028_00005 - 162 1.3e-08 35.0 0.4 1 2 4e-12 2.4e-08 34.2 0.1 14 84 12 84 4 86 0.84 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 AAFL01000028_00005 - 162 1.3e-08 35.0 0.4 2 2 0.86 5.1e+03 -2.2 0.0 44 57 144 158 107 161 0.62 Restriction endonuclease fold toxin 7 Tn7_Tnp_TnsA_N PF08722.11 88 AAFL01000028_00005 - 162 0.0021 18.2 1.0 1 2 4.8e-07 0.0029 17.8 0.1 30 75 26 68 8 74 0.75 TnsA endonuclease N terminal Tn7_Tnp_TnsA_N PF08722.11 88 AAFL01000028_00005 - 162 0.0021 18.2 1.0 2 2 1.6 9.7e+03 -3.1 0.1 57 64 150 157 135 161 0.55 TnsA endonuclease N terminal VRR_NUC PF08774.11 108 AAFL01000028_00005 - 162 0.041 13.9 0.0 1 2 2.1e-05 0.13 12.4 0.0 47 96 21 66 3 75 0.81 VRR-NUC domain VRR_NUC PF08774.11 108 AAFL01000028_00005 - 162 0.041 13.9 0.0 2 2 0.27 1.6e+03 -0.8 0.0 35 56 85 106 61 121 0.69 VRR-NUC domain adh_short PF00106.25 195 AAFL01000029_00001 - 117 0.0094 15.4 0.0 1 1 1.1e-06 0.01 15.3 0.0 20 109 3 102 1 112 0.79 short chain dehydrogenase Mur_ligase_C PF02875.21 91 AAFL01000029_00001 - 117 0.086 13.1 0.0 1 1 1.3e-05 0.12 12.7 0.0 20 78 14 69 1 79 0.80 Mur ligase family, glutamate ligase domain RHH_7 PF16777.5 74 AAFL01000029_00002 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 AAFL01000029_00002 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal NYN PF01936.18 147 AAFL01000029_00005 - 180 1.2e-09 38.8 0.0 1 1 2.3e-13 1.4e-09 38.6 0.0 57 123 71 146 15 161 0.81 NYN domain Peroxin-22 PF12827.7 113 AAFL01000029_00005 - 180 0.014 15.3 0.5 1 1 4.7e-06 0.028 14.3 0.5 26 105 82 162 46 169 0.78 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 AAFL01000029_00005 - 180 0.028 15.1 0.0 1 1 7.5e-06 0.045 14.4 0.0 57 103 99 142 72 142 0.87 PIN domain AAA_25 PF13481.6 194 AAFL01000031_00001 - 573 4.4e-15 55.8 0.0 1 1 2.9e-18 1e-14 54.5 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 AAFL01000031_00001 - 573 0.00028 20.3 0.0 1 2 5.1e-07 0.0018 17.6 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 AAFL01000031_00001 - 573 0.00028 20.3 0.0 2 2 0.0086 31 3.8 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 AAFL01000031_00001 - 573 0.0021 17.8 0.0 1 2 3.8e-06 0.014 15.2 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 AAFL01000031_00001 - 573 0.0021 17.8 0.0 2 2 0.35 1.3e+03 -1.0 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 AAFL01000031_00001 - 573 0.007 15.7 0.0 1 2 2e-05 0.07 12.5 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 AAFL01000031_00001 - 573 0.007 15.7 0.0 2 2 0.43 1.5e+03 -1.7 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 AAFL01000031_00001 - 573 0.02 15.3 0.3 1 3 8.7e-05 0.31 11.5 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 AAFL01000031_00001 - 573 0.02 15.3 0.3 2 3 0.2 7.3e+02 0.6 0.0 47 74 411 434 377 445 0.70 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 AAFL01000031_00001 - 573 0.02 15.3 0.3 3 3 2.4 8.5e+03 -2.9 0.0 23 49 495 523 475 527 0.69 ATPase family associated with various cellular activities (AAA) HicA_toxin PF07927.12 58 AAFL01000031_00002 - 67 6.1e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, Endomucin PF07010.12 260 AAFL01000032_00002 - 87 0.029 14.4 0.5 1 1 1.7e-06 0.03 14.3 0.5 176 206 51 81 23 86 0.86 Endomucin HicA_toxin PF07927.12 58 AAFL01000032_00003 - 67 6.2e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, N-glycanase_N PF09112.10 173 AAFL01000033_00001 - 175 0.016 15.0 0.1 1 1 1.2e-06 0.021 14.6 0.1 62 156 15 113 14 138 0.74 Peptide-N-glycosidase F, N terminal RHH_7 PF16777.5 74 AAFL01000033_00002 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 AAFL01000033_00002 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal adh_short PF00106.25 195 AAFL01000033_00003 - 117 0.0094 15.4 0.0 1 1 1.1e-06 0.01 15.3 0.0 20 109 3 102 1 112 0.79 short chain dehydrogenase Mur_ligase_C PF02875.21 91 AAFL01000033_00003 - 117 0.086 13.1 0.0 1 1 1.3e-05 0.12 12.7 0.0 20 78 14 69 1 79 0.80 Mur ligase family, glutamate ligase domain HicB_lk_antitox PF15919.5 123 AAFL01000034_00001 - 89 4.4e-08 33.3 0.0 1 1 3.5e-12 6.3e-08 32.8 0.0 3 58 5 59 3 67 0.87 HicB_like antitoxin of bacterial toxin-antitoxin system Toprim_3 PF13362.6 95 AAFL01000035_00001 - 283 1.3e-06 28.7 0.1 1 2 0.37 3.3e+03 -1.5 0.0 55 74 78 101 70 109 0.74 Toprim domain Toprim_3 PF13362.6 95 AAFL01000035_00001 - 283 1.3e-06 28.7 0.1 2 2 4.9e-10 4.4e-06 27.0 0.0 3 74 189 268 187 277 0.89 Toprim domain Retrotrans_gag PF03732.17 96 AAFL01000035_00001 - 283 0.0086 16.3 0.1 1 2 0.0068 61 4.0 0.2 41 60 67 87 37 100 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 AAFL01000035_00001 - 283 0.0086 16.3 0.1 2 2 9.9e-05 0.88 9.9 0.0 14 83 200 277 195 282 0.80 Retrotransposon gag protein Adenyl_transf PF04439.12 279 AJ489618_00001 - 233 6.7e-81 271.5 0.9 1 1 4.2e-85 7.6e-81 271.3 0.9 70 278 1 207 1 208 0.99 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 AJ489618_00002 - 180 7.8e-21 74.5 0.1 1 1 6.3e-24 1e-20 74.1 0.1 14 117 53 153 34 153 0.81 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 AJ489618_00002 - 180 1.4e-13 51.1 0.1 1 1 1.4e-16 2.4e-13 50.3 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 AJ489618_00002 - 180 2.6e-12 46.8 0.0 1 1 2.2e-15 3.6e-12 46.3 0.0 24 107 65 154 46 159 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 AJ489618_00002 - 180 3e-10 40.5 1.6 1 1 2.2e-13 3.6e-10 40.2 1.6 31 152 54 171 26 174 0.83 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 AJ489618_00002 - 180 0.00021 21.4 0.0 1 1 2.5e-07 0.0004 20.4 0.0 6 58 79 130 49 132 0.88 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 138 AJ489618_00002 - 180 0.00052 20.7 0.0 1 1 3.9e-07 0.00064 20.4 0.0 52 138 71 154 28 154 0.73 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 128 AJ489618_00002 - 180 0.0019 18.3 0.0 1 1 4.8e-06 0.0078 16.3 0.0 21 126 50 154 46 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 AJ489618_00002 - 180 0.015 15.3 0.0 1 1 1.4e-05 0.024 14.6 0.0 21 78 96 154 91 164 0.86 FR47-like protein Acetyltransf_15 PF17013.5 210 AJ489618_00002 - 180 0.035 13.6 0.2 1 1 6.5e-05 0.11 12.0 0.2 72 139 96 156 44 174 0.69 Putative acetyl-transferase Acetyltransf_8 PF13523.6 145 AJ489618_00002 - 180 0.042 13.5 0.0 1 2 0.11 1.8e+02 1.8 0.0 15 57 44 85 42 96 0.86 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 145 AJ489618_00002 - 180 0.042 13.5 0.0 2 2 0.0004 0.64 9.7 0.0 89 139 106 155 100 160 0.91 Acetyltransferase (GNAT) domain PanZ PF12568.8 128 AJ489618_00002 - 180 0.08 12.7 0.0 1 1 6.9e-05 0.11 12.2 0.0 43 121 77 154 47 163 0.72 Acetyltransferase (GNAT) domain, PanZ APH PF01636.23 240 AJ489618_00003 - 264 4.5e-26 92.2 0.0 1 1 8.7e-30 5.2e-26 92.0 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 AJ489618_00003 - 264 0.0022 17.6 0.0 1 1 6e-07 0.0036 16.9 0.0 134 198 171 236 99 244 0.77 Choline/ethanolamine kinase RIO1 PF01163.22 188 AJ489618_00003 - 264 0.0099 15.5 0.0 1 2 0.0022 13 5.3 0.0 48 116 50 120 26 127 0.74 RIO1 family RIO1 PF01163.22 188 AJ489618_00003 - 264 0.0099 15.5 0.0 2 2 0.00029 1.8 8.2 0.0 123 153 182 213 157 230 0.77 RIO1 family HTH_11 PF08279.12 55 AJ489618_00004 - 67 0.00042 20.2 0.1 1 1 6.3e-08 0.00056 19.8 0.1 1 28 6 32 6 34 0.95 HTH domain HTH_24 PF13412.6 48 AJ489618_00004 - 67 0.096 12.3 0.3 1 1 1.6e-05 0.14 11.7 0.3 7 30 9 32 1 32 0.93 Winged helix-turn-helix DNA-binding Resolvase PF00239.21 146 AJ490186_00001 - 212 4.3e-18 65.8 0.3 1 1 2.8e-21 7.1e-18 65.1 0.3 2 136 65 195 64 204 0.84 Resolvase, N terminal domain MerR PF00376.23 38 AJ490186_00001 - 212 1.5e-12 47.1 0.0 1 1 9.6e-16 2.4e-12 46.4 0.0 1 38 6 43 6 43 0.99 MerR family regulatory protein MerR_1 PF13411.6 69 AJ490186_00001 - 212 6e-11 42.3 0.0 1 2 6.7e-14 1.7e-10 40.8 0.0 2 47 6 52 5 69 0.92 MerR HTH family regulatory protein MerR_1 PF13411.6 69 AJ490186_00001 - 212 6e-11 42.3 0.0 2 2 2.2 5.7e+03 -2.5 0.0 51 64 89 102 81 106 0.75 MerR HTH family regulatory protein HTH_17 PF12728.7 51 AJ490186_00001 - 212 0.00043 20.4 0.0 1 1 3.2e-07 0.00082 19.5 0.0 1 44 4 49 4 62 0.91 Helix-turn-helix domain NTPase_P4 PF11602.8 320 AJ490186_00001 - 212 0.0027 17.0 0.0 1 1 1.3e-06 0.0034 16.6 0.0 48 141 53 142 30 163 0.82 ATPase P4 of dsRNA bacteriophage phi-12 PIN_2 PF10130.9 133 AJ490186_00001 - 212 0.063 13.5 1.4 1 2 1.8 4.5e+03 -2.2 0.0 78 94 61 77 45 81 0.68 PIN domain PIN_2 PF10130.9 133 AJ490186_00001 - 212 0.063 13.5 1.4 2 2 3.3e-05 0.083 13.1 0.4 7 89 117 201 114 205 0.88 PIN domain HTH_23 PF13384.6 50 AJ490186_00001 - 212 0.068 13.0 0.0 1 2 0.00012 0.31 10.9 0.0 18 37 5 24 2 29 0.89 Homeodomain-like domain HTH_23 PF13384.6 50 AJ490186_00001 - 212 0.068 13.0 0.0 2 2 0.95 2.4e+03 -1.5 0.0 9 25 84 102 77 103 0.71 Homeodomain-like domain OrfB_Zn_ribbon PF07282.11 69 AJ490186_00002 - 427 2.1e-22 78.8 0.9 1 1 9.4e-26 4.2e-22 77.8 0.9 1 68 313 382 313 383 0.97 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 AJ490186_00002 - 427 2.7e-18 66.4 4.5 1 2 6.2e-22 2.8e-18 66.3 2.3 4 117 174 299 171 301 0.85 Probable transposase OrfB_IS605 PF01385.19 120 AJ490186_00002 - 427 2.7e-18 66.4 4.5 2 2 2.7 1.2e+04 -3.5 0.0 22 35 406 419 396 421 0.76 Probable transposase HTH_OrfB_IS605 PF12323.8 47 AJ490186_00002 - 427 7.7e-15 54.1 0.3 1 1 5e-18 2.2e-14 52.6 0.3 5 47 12 54 8 54 0.95 Helix-turn-helix domain Zn_Tnp_IS1595 PF12760.7 46 AJ490186_00002 - 427 0.036 14.0 2.2 1 1 1.6e-05 0.071 13.1 2.2 13 44 336 367 332 369 0.89 Transposase zinc-ribbon domain APH PF01636.23 240 AJ490186_00003 - 264 5.9e-26 91.8 0.0 1 1 1.1e-29 6.9e-26 91.6 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 AJ490186_00003 - 264 0.0018 17.9 0.0 1 1 4.9e-07 0.0029 17.2 0.0 134 198 171 236 104 244 0.77 Choline/ethanolamine kinase RIO1 PF01163.22 188 AJ490186_00003 - 264 0.018 14.7 0.0 1 2 0.0029 17 4.9 0.0 49 116 51 120 29 130 0.66 RIO1 family RIO1 PF01163.22 188 AJ490186_00003 - 264 0.018 14.7 0.0 2 2 0.0005 3 7.4 0.0 128 152 187 212 166 230 0.81 RIO1 family PRELI PF04707.14 157 AVFM02000066_00001 - 265 0.038 13.8 0.4 1 2 0.62 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 AVFM02000066_00001 - 265 0.038 13.8 0.4 2 2 4.2e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 AVFM02000066_00001 - 265 0.089 11.5 0.1 1 1 1.3e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Relaxase PF03432.14 242 AVFM02000068_00001 - 456 2.8e-10 40.2 7.9 1 2 1.6e-14 2.8e-10 40.2 7.9 48 232 119 299 70 307 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 AVFM02000068_00001 - 456 2.8e-10 40.2 7.9 2 2 0.0014 25 4.4 3.1 126 180 345 403 320 418 0.81 Relaxase/Mobilisation nuclease domain Helicase_C PF00271.31 111 AVFM02000069_00001 - 404 0.0015 18.9 0.0 1 4 8.1e-08 0.0015 18.9 0.0 63 111 2 52 1 52 0.85 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 AVFM02000069_00001 - 404 0.0015 18.9 0.0 2 4 0.28 5.1e+03 -2.2 0.1 26 26 187 187 138 236 0.60 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 AVFM02000069_00001 - 404 0.0015 18.9 0.0 3 4 0.1 1.9e+03 -0.8 0.1 14 45 221 254 206 265 0.63 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 AVFM02000069_00001 - 404 0.0015 18.9 0.0 4 4 0.16 2.8e+03 -1.4 0.1 21 66 309 359 289 366 0.51 Helicase conserved C-terminal domain efb-c PF12199.8 65 AVFM02000069_00002 - 49 0.05 13.7 0.3 1 1 3.9e-06 0.07 13.2 0.3 40 62 4 26 1 29 0.93 Extracellular fibrinogen binding protein C terminal Toprim PF01751.22 103 AVFM02000070_00001 - 178 3.2e-13 49.8 0.0 1 1 7.3e-17 4.3e-13 49.4 0.0 2 102 3 133 2 134 0.91 Toprim domain Topoisom_bac PF01131.20 413 AVFM02000070_00001 - 178 0.008 15.2 0.0 1 1 2e-06 0.012 14.6 0.0 5 27 154 176 151 178 0.89 DNA topoisomerase EF-hand_8 PF13833.6 55 AVFM02000070_00001 - 178 0.019 14.8 0.0 1 1 7.6e-06 0.046 13.6 0.0 26 53 94 121 86 123 0.91 EF-hand domain pair SNF2_N PF00176.23 350 AVFM02000073_00001 - 441 1.2e-10 40.6 0.2 1 1 8.7e-14 3.1e-10 39.3 0.2 57 191 223 400 140 409 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 AVFM02000073_00001 - 441 6.1e-10 39.4 9.3 1 1 5.1e-12 1.8e-08 34.5 9.2 2 146 205 400 204 437 0.78 Type III restriction enzyme, res subunit DEAD PF00270.29 176 AVFM02000073_00001 - 441 5.8e-07 29.4 0.4 1 2 8.4e-08 0.0003 20.6 0.0 2 108 209 314 208 318 0.76 DEAD/DEAH box helicase DEAD PF00270.29 176 AVFM02000073_00001 - 441 5.8e-07 29.4 0.4 2 2 0.0018 6.4 6.5 0.3 88 135 350 400 315 412 0.66 DEAD/DEAH box helicase AAA_11 PF13086.6 261 AVFM02000073_00001 - 441 0.0032 17.3 4.6 1 2 0.00078 2.8 7.6 0.1 2 42 207 247 206 292 0.63 AAA domain AAA_11 PF13086.6 261 AVFM02000073_00001 - 441 0.0032 17.3 4.6 2 2 0.00029 1 9.1 3.0 149 226 301 395 275 397 0.79 AAA domain Tup_N PF08581.10 77 AVFM02000073_00001 - 441 0.072 13.4 0.3 1 4 1.9 7e+03 -2.6 0.0 52 75 11 34 9 36 0.71 Tup N-terminal Tup_N PF08581.10 77 AVFM02000073_00001 - 441 0.072 13.4 0.3 2 4 1.4 5e+03 -2.1 0.1 7 14 155 162 151 188 0.59 Tup N-terminal Tup_N PF08581.10 77 AVFM02000073_00001 - 441 0.072 13.4 0.3 3 4 2e-05 0.072 13.4 0.3 25 76 290 342 271 343 0.75 Tup N-terminal Tup_N PF08581.10 77 AVFM02000073_00001 - 441 0.072 13.4 0.3 4 4 0.023 82 3.6 0.2 41 59 360 378 344 380 0.76 Tup N-terminal Eco57I PF07669.11 106 AVFM02000073_00002 - 653 1.3e-05 25.6 0.2 1 1 5.8e-09 5.2e-05 23.7 0.2 3 103 372 472 370 475 0.80 Eco57I restriction-modification methylase MTS PF05175.14 169 AVFM02000073_00002 - 653 0.0038 16.8 0.0 1 1 1e-06 0.0091 15.6 0.0 31 140 309 422 299 442 0.72 Methyltransferase small domain RHH_7 PF16777.5 74 AVFM02000073_00003 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 AVFM02000073_00003 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal Cag12 PF13117.6 97 AVFM02000074_00002 - 145 4.8e-17 62.3 0.3 1 1 1e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 AVFM02000074_00002 - 145 0.052 13.7 0.1 1 1 1.1e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 AVFM02000074_00002 - 145 0.08 12.7 0.3 1 1 3.6e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) T4SS-DNA_transf PF02534.14 469 AVFM02000074_00003 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 AVFM02000074_00003 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 AVFM02000074_00003 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 AVFM02000074_00003 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 AVFM02000074_00003 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 AVFM02000074_00004 - 330 6.3e-54 182.9 0.0 1 1 1.1e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 AVFM02000074_00004 - 330 6e-05 23.6 0.0 1 1 1.8e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 AVFM02000074_00004 - 330 0.00016 21.2 0.0 1 1 3.7e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 AVFM02000074_00004 - 330 0.00021 20.8 0.0 1 1 5.6e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 AVFM02000074_00004 - 330 0.0014 18.9 0.0 1 1 3.8e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 AVFM02000074_00004 - 330 0.0026 17.5 0.0 1 1 7.8e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 AVFM02000074_00004 - 330 0.003 17.3 0.0 1 1 7e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 AVFM02000074_00004 - 330 0.0036 17.3 0.0 1 1 1.1e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 AVFM02000074_00004 - 330 0.0048 15.9 0.0 1 1 1.1e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 AVFM02000074_00004 - 330 0.0072 16.3 0.0 1 1 1.8e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 AVFM02000074_00004 - 330 0.0086 15.4 0.0 1 1 2.1e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 AVFM02000074_00004 - 330 0.0087 16.0 0.0 1 1 1.8e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 AVFM02000074_00004 - 330 0.018 14.8 0.0 1 1 5.4e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 AVFM02000074_00004 - 330 0.019 15.0 0.0 1 1 6.1e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 AVFM02000074_00004 - 330 0.021 13.7 0.0 1 1 5e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 AVFM02000074_00004 - 330 0.023 14.8 0.1 1 1 6.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 AVFM02000074_00004 - 330 0.024 14.4 0.0 1 1 7.9e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 AVFM02000074_00004 - 330 0.032 14.3 0.1 1 1 0.00015 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 AVFM02000074_00004 - 330 0.035 13.6 0.0 1 1 8.4e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 AVFM02000074_00004 - 330 0.036 14.4 0.0 1 2 9.8 6.5e+03 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 AVFM02000074_00004 - 330 0.036 14.4 0.0 2 2 0.00016 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 AVFM02000074_00004 - 330 0.037 13.8 0.0 1 1 9.3e-05 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 AVFM02000074_00004 - 330 0.039 13.2 0.0 1 1 0.0001 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 AVFM02000074_00004 - 330 0.051 13.3 0.0 1 1 0.00016 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 AVFM02000074_00004 - 330 0.063 11.9 0.0 1 1 0.00013 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 AVFM02000074_00004 - 330 0.064 13.6 0.0 1 1 0.00015 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 AVFM02000074_00004 - 330 0.084 12.8 0.3 1 1 0.00033 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 AVFM02000074_00004 - 330 0.088 12.7 0.0 1 1 0.00029 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B TrbI PF03743.14 187 AVFM02000074_00005 - 319 1.9e-48 164.8 0.1 1 1 3.6e-52 3.2e-48 164.1 0.1 1 187 122 303 122 303 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 AVFM02000074_00005 - 319 0.022 13.8 0.1 1 1 3.6e-06 0.032 13.3 0.1 31 81 250 300 233 305 0.89 HaeIII restriction endonuclease HNOBA PF07701.14 221 AVFM02000075_00001 - 167 0.077 12.4 0.0 1 1 1.3e-05 0.12 11.8 0.0 109 153 40 89 14 99 0.75 Heme NO binding associated cEGF PF12662.7 24 AVFM02000075_00001 - 167 0.081 12.9 0.0 1 1 1.5e-05 0.13 12.2 0.0 14 24 4 15 1 15 0.81 Complement Clr-like EGF-like Phage_pRha PF09669.10 88 AVFM02000075_00002 - 185 1.5e-28 99.2 0.0 1 1 2.6e-32 2.3e-28 98.6 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 AVFM02000075_00002 - 185 0.0018 18.4 0.0 1 1 4.2e-07 0.0038 17.3 0.0 23 90 27 94 22 96 0.90 Uncharacterized protein conserved in archaea (DUF2250) DUF3251 PF11622.8 165 AVFM02000075_00003 - 221 0.079 12.6 0.1 1 1 1e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) SSB PF00436.25 104 AVFM02000075_00004 - 140 2.6e-25 88.5 0.1 1 1 1.9e-29 3.5e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 AVFM02000075_00005 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 AVFM02000075_00005 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 AVFM02000075_00005 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 AVFM02000075_00005 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 AVFM02000075_00005 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 AVFM02000075_00005 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 AVFM02000075_00005 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 AVFM02000075_00006 - 328 5e-28 98.9 13.9 1 1 1.6e-31 7.2e-28 98.3 13.9 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 AVFM02000075_00006 - 328 0.0042 17.2 1.4 1 3 0.59 2.6e+03 -1.4 0.0 30 53 134 157 122 164 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 AVFM02000075_00006 - 328 0.0042 17.2 1.4 2 3 3.6e-06 0.016 15.3 0.1 18 82 195 259 188 263 0.92 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 AVFM02000075_00006 - 328 0.0042 17.2 1.4 3 3 0.83 3.7e+03 -1.9 0.0 62 79 302 319 292 327 0.75 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 AVFM02000075_00006 - 328 0.007 17.1 5.8 1 2 0.023 1e+02 3.6 0.5 93 135 105 145 40 182 0.61 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 AVFM02000075_00006 - 328 0.007 17.1 5.8 2 2 1.6e-06 0.007 17.1 5.8 47 125 219 315 203 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 AVFM02000075_00006 - 328 0.092 13.4 3.4 1 2 1.1 5.1e+03 -1.9 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 AVFM02000075_00006 - 328 0.092 13.4 3.4 2 2 1.7e-05 0.078 13.6 1.0 32 84 209 270 202 295 0.83 von Willebrand factor type A domain TrbL PF04610.14 215 AVFM02000075_00007 - 330 2.7e-29 102.5 30.5 1 1 1.5e-33 2.7e-29 102.5 30.5 1 214 38 250 38 251 0.92 TrbL/VirB6 plasmid conjugal transfer protein Trep_dent_lipo PF09710.10 397 AVFM02000075_00008 - 55 0.016 14.1 0.0 1 1 9.1e-07 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) VirB8 PF04335.13 214 AVFM02000075_00009 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 AVFM02000075_00009 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 AVFM02000075_00010 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 AVFM02000075_00010 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 AVFM02000075_00010 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) SSB PF00436.25 104 AVFM02000076_00001 - 153 1.3e-23 83.0 0.0 1 1 1.8e-27 1.7e-23 82.7 0.0 1 103 1 104 1 105 0.98 Single-strand binding protein family DnaJ-X PF14308.6 211 AVFM02000076_00001 - 153 0.0027 17.2 0.1 1 1 4.2e-07 0.0037 16.7 0.1 61 133 61 133 60 149 0.72 X-domain of DnaJ-containing DUF4389 PF14333.6 76 AVFM02000076_00002 - 61 0.054 13.4 3.8 1 1 4.5e-06 0.08 12.9 3.8 15 53 2 40 1 48 0.93 Domain of unknown function (DUF4389) MgtE_N PF03448.17 102 AVFM02000077_00001 - 100 4e-05 24.2 0.3 1 2 0.0004 3.6 8.2 0.0 58 90 20 52 18 57 0.85 MgtE intracellular N domain MgtE_N PF03448.17 102 AVFM02000077_00001 - 100 4e-05 24.2 0.3 2 2 4.4e-06 0.039 14.6 0.3 50 77 55 82 52 85 0.91 MgtE intracellular N domain Com_YlbF PF06133.11 105 AVFM02000077_00001 - 100 0.0099 16.5 1.9 1 2 1 8.9e+03 -2.7 0.0 63 63 40 40 30 53 0.50 Control of competence regulator ComK, YlbF/YmcA Com_YlbF PF06133.11 105 AVFM02000077_00001 - 100 0.0099 16.5 1.9 2 2 1.1e-06 0.0099 16.5 1.9 3 44 57 98 56 100 0.94 Control of competence regulator ComK, YlbF/YmcA CpXC PF14353.6 118 AVFM02000077_00002 - 143 0.033 14.2 2.2 1 1 2.3e-06 0.041 13.9 2.2 2 62 9 75 8 140 0.72 CpXC protein T4SS PF07996.11 197 AVFM02000078_00001 - 318 3.4e-07 30.9 8.7 1 2 5.7e-11 3.4e-07 30.9 8.7 1 145 20 159 20 179 0.56 Type IV secretion system proteins T4SS PF07996.11 197 AVFM02000078_00001 - 318 3.4e-07 30.9 8.7 2 2 0.089 5.3e+02 0.9 13.8 135 181 214 260 160 267 0.64 Type IV secretion system proteins HBM PF16591.5 254 AVFM02000078_00001 - 318 0.0086 15.5 15.0 1 2 2.5e-06 0.015 14.7 0.2 195 240 27 72 18 81 0.90 Helical bimodular sensor domain HBM PF16591.5 254 AVFM02000078_00001 - 318 0.0086 15.5 15.0 2 2 0.0054 32 3.8 9.6 43 137 141 240 117 266 0.72 Helical bimodular sensor domain HTH_16 PF12645.7 65 AVFM02000078_00001 - 318 0.053 13.6 0.4 1 2 0.1 6.2e+02 0.5 0.0 16 28 37 49 30 63 0.86 Helix-turn-helix domain HTH_16 PF12645.7 65 AVFM02000078_00001 - 318 0.053 13.6 0.4 2 2 0.00013 0.79 9.8 0.2 7 50 184 221 182 230 0.79 Helix-turn-helix domain FIVAR PF07554.13 71 AVFM02000078_00002 - 61 0.034 14.9 8.8 1 1 6.2e-06 0.056 14.2 8.8 13 62 6 57 3 57 0.81 FIVAR domain PRD PF00874.20 90 AVFM02000078_00002 - 61 0.077 13.3 4.1 1 1 1.1e-05 0.096 13.0 4.1 34 66 8 40 5 49 0.84 PRD domain T4SS-DNA_transf PF02534.14 469 AVFM02000079_00001 - 493 3e-58 197.8 2.6 1 1 2.7e-61 1.2e-57 195.8 2.6 46 364 137 479 94 487 0.81 Type IV secretory system Conjugative DNA transfer TrwB_AAD_bind PF10412.9 386 AVFM02000079_00001 - 493 4.2e-19 68.7 0.0 1 2 5.3e-06 0.024 13.6 0.0 49 148 167 282 136 290 0.68 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 AVFM02000079_00001 - 493 4.2e-19 68.7 0.0 2 2 5.4e-18 2.4e-14 53.1 0.0 141 308 315 483 297 487 0.83 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 126 AVFM02000079_00001 - 493 3e-14 53.1 0.0 1 2 0.26 1.2e+03 -0.5 0.0 22 38 370 386 357 388 0.83 TraM recognition site of TraD and TraG TraG-D_C PF12696.7 126 AVFM02000079_00001 - 493 3e-14 53.1 0.0 2 2 5.3e-17 2.4e-13 50.2 0.0 3 66 421 484 420 491 0.95 TraM recognition site of TraD and TraG DUF418 PF04235.12 163 AVFM02000079_00001 - 493 0.057 13.4 1.4 1 1 2e-05 0.091 12.7 1.4 13 75 7 70 1 79 0.91 Protein of unknown function (DUF418) VirB8 PF04335.13 214 AVFM02000080_00001 - 225 3.6e-29 102.1 0.9 1 1 2.3e-33 4.2e-29 101.9 0.9 23 213 26 208 13 209 0.88 VirB8 protein TrwB_AAD_bind PF10412.9 386 AVFM02000080_00003 - 197 6.4e-05 22.0 0.0 1 1 8.5e-09 7.6e-05 21.8 0.0 224 333 12 125 5 171 0.69 Type IV secretion-system coupling protein DNA-binding domain CNTF PF01110.17 194 AVFM02000080_00003 - 197 0.084 12.2 0.0 1 1 1.4e-05 0.12 11.7 0.0 34 108 45 124 39 140 0.76 Ciliary neurotrophic factor CagX PF03524.15 211 AVFM02000082_00001 - 208 9.1e-26 90.9 0.7 1 1 1.7e-29 1e-25 90.7 0.7 34 210 11 199 1 200 0.83 Conjugal transfer protein DUF4905 PF16248.5 83 AVFM02000082_00001 - 208 0.055 13.4 0.1 1 1 3.4e-05 0.2 11.6 0.1 34 74 120 160 110 168 0.85 Domain of unknown function (DUF4905) Phosphodiest PF01663.22 357 AVFM02000082_00001 - 208 0.076 12.6 1.3 1 2 4.2e-05 0.25 10.9 1.1 255 316 62 125 42 170 0.72 Type I phosphodiesterase / nucleotide pyrophosphatase Phosphodiest PF01663.22 357 AVFM02000082_00001 - 208 0.076 12.6 1.3 2 2 0.11 6.8e+02 -0.4 0.0 58 86 167 193 165 205 0.77 Type I phosphodiesterase / nucleotide pyrophosphatase TrbI PF03743.14 187 AVFM02000082_00003 - 180 8.1e-32 110.6 0.7 1 1 6e-36 1.1e-31 110.2 0.7 1 131 41 171 41 179 0.91 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 AVFM02000082_00004 - 65 1.8e-06 27.9 0.1 1 1 2.1e-10 1.9e-06 27.9 0.1 146 187 8 49 1 49 0.91 Bacterial conjugation TrbI-like protein TraH_2 PF06871.11 207 AVFM02000082_00004 - 65 0.06 13.0 0.2 1 2 0.00058 5.2 6.6 0.0 18 49 15 45 8 47 0.86 TraH_2 TraH_2 PF06871.11 207 AVFM02000082_00004 - 65 0.06 13.0 0.2 2 2 0.0018 16 5.0 0.0 115 131 48 64 45 65 0.92 TraH_2 FOXP-CC PF16159.5 69 AVFM02000082_00005 - 66 0.0033 18.0 0.3 1 1 2.1e-07 0.0038 17.8 0.3 31 64 22 55 4 58 0.82 FOXP coiled-coil domain TrbL PF04610.14 215 AVFM02000084_00002 - 382 1.5e-31 109.9 22.6 1 3 0.38 6.7e+03 -3.4 0.0 75 89 11 28 4 41 0.57 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 AVFM02000084_00002 - 382 1.5e-31 109.9 22.6 2 3 8.1e-36 1.5e-31 109.9 22.6 1 215 46 280 46 280 0.92 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 AVFM02000084_00002 - 382 1.5e-31 109.9 22.6 3 3 0.046 8.2e+02 -0.4 0.0 42 65 357 380 347 382 0.81 TrbL/VirB6 plasmid conjugal transfer protein Topoisom_bac PF01131.20 413 AVFM02000084_00003 - 133 2.2e-13 50.0 0.0 1 1 5e-17 3e-13 49.6 0.0 3 62 68 126 66 129 0.92 DNA topoisomerase Toprim PF01751.22 103 AVFM02000084_00003 - 133 4.4e-10 39.7 0.3 1 2 1.5e-13 9.2e-10 38.7 0.2 61 103 8 49 3 49 0.92 Toprim domain Toprim PF01751.22 103 AVFM02000084_00003 - 133 4.4e-10 39.7 0.3 2 2 1.1 6.9e+03 -2.7 0.0 40 44 90 94 58 111 0.58 Toprim domain Toprim_4 PF13662.6 89 AVFM02000084_00003 - 133 0.1 13.1 0.0 1 2 4.9e-05 0.29 11.6 0.0 54 76 10 32 2 45 0.76 Toprim domain Toprim_4 PF13662.6 89 AVFM02000084_00003 - 133 0.1 13.1 0.0 2 2 0.67 4e+03 -1.6 0.0 19 32 57 70 55 102 0.73 Toprim domain DUF2852 PF11014.8 122 AVFM02000085_00002 - 246 0.0052 16.9 1.5 1 3 0.12 1.1e+03 -0.2 0.3 98 114 5 22 2 41 0.55 Protein of unknown function (DUF2852) DUF2852 PF11014.8 122 AVFM02000085_00002 - 246 0.0052 16.9 1.5 2 3 5.8e-07 0.0052 16.9 1.5 41 107 88 156 62 159 0.80 Protein of unknown function (DUF2852) DUF2852 PF11014.8 122 AVFM02000085_00002 - 246 0.0052 16.9 1.5 3 3 0.16 1.4e+03 -0.6 0.0 30 63 181 213 177 227 0.73 Protein of unknown function (DUF2852) DUF5442 PF17514.2 107 AVFM02000085_00002 - 246 0.026 14.7 5.3 1 2 0.43 3.9e+03 -1.9 0.2 33 52 10 29 4 47 0.63 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 AVFM02000085_00002 - 246 0.026 14.7 5.3 2 2 2.8e-06 0.026 14.7 5.3 31 98 134 201 120 214 0.85 Family of unknown function (DUF5442) Toprim_2 PF13155.6 90 AVFM02000085_00004 - 202 2.6e-13 50.2 0.9 1 2 0.16 4.8e+02 1.3 0.1 53 83 30 60 29 66 0.78 Toprim-like Toprim_2 PF13155.6 90 AVFM02000085_00004 - 202 2.6e-13 50.2 0.9 2 2 6.8e-16 2e-12 47.3 0.1 1 90 70 161 70 161 0.89 Toprim-like DUF3991 PF13154.6 76 AVFM02000085_00004 - 202 0.00012 22.3 0.1 1 1 1.1e-07 0.00032 21.0 0.1 36 72 21 57 12 62 0.88 Protein of unknown function (DUF3991) Sushi_2 PF09014.10 88 AVFM02000085_00004 - 202 0.056 13.3 0.6 1 2 3.9 1.2e+04 -3.7 0.1 16 26 57 67 53 73 0.69 Beta-2-glycoprotein-1 fifth domain Sushi_2 PF09014.10 88 AVFM02000085_00004 - 202 0.056 13.3 0.6 2 2 3.1e-05 0.091 12.7 0.1 31 80 104 156 95 162 0.80 Beta-2-glycoprotein-1 fifth domain Toprim_3 PF13362.6 95 AVFM02000085_00004 - 202 0.067 13.6 0.0 1 1 4e-05 0.12 12.8 0.0 1 89 68 161 68 164 0.77 Toprim domain Toprim_4 PF13662.6 89 AVFM02000085_00004 - 202 0.071 13.6 0.0 1 1 6.3e-05 0.19 12.2 0.0 2 76 68 140 67 150 0.76 Toprim domain Toprim PF01751.22 103 AVFM02000085_00004 - 202 0.09 13.0 1.2 1 2 5e-05 0.15 12.3 0.5 17 90 66 147 52 159 0.72 Toprim domain Toprim PF01751.22 103 AVFM02000085_00004 - 202 0.09 13.0 1.2 2 2 1.7 5.2e+03 -2.3 0.0 45 59 174 188 149 192 0.68 Toprim domain Cys_rich_KTR PF14205.6 54 AVFM020000_00001 - 57 4.7e-32 109.6 5.1 1 1 5.8e-35 5.2e-32 109.4 5.1 2 54 5 57 4 57 0.99 Cysteine-rich KTR Prim_Zn_Ribbon PF08273.12 38 AVFM020000_00001 - 57 0.00057 20.1 1.3 1 2 2.5e-06 0.0023 18.2 0.0 6 19 9 22 7 25 0.86 Zinc-binding domain of primase-helicase Prim_Zn_Ribbon PF08273.12 38 AVFM020000_00001 - 57 0.00057 20.1 1.3 2 2 0.71 6.4e+02 0.8 0.4 2 9 29 36 28 40 0.72 Zinc-binding domain of primase-helicase zf-ISL3 PF14690.6 47 AVFM020000_00001 - 57 0.0029 18.2 0.6 1 2 0.00087 0.78 10.5 0.1 4 14 8 18 6 26 0.74 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ISL3 PF14690.6 47 AVFM020000_00001 - 57 0.0029 18.2 0.6 2 2 0.014 13 6.6 0.1 5 16 33 46 30 55 0.71 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.7 46 AVFM020000_00001 - 57 0.0033 17.4 1.7 1 2 0.0013 1.1 9.3 0.1 21 34 9 22 5 29 0.84 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 AVFM020000_00001 - 57 0.0033 17.4 1.7 2 2 0.0023 2.1 8.4 0.1 20 32 32 44 22 50 0.79 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 40 AVFM020000_00001 - 57 0.0038 17.3 1.4 1 2 0.00097 0.87 9.8 0.2 28 38 8 18 1 20 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 AVFM020000_00001 - 57 0.0038 17.3 1.4 2 2 0.0063 5.7 7.2 0.1 27 37 31 42 21 44 0.73 Zinc ribbon domain zf-TFIIB PF13453.6 41 AVFM020000_00001 - 57 0.0042 16.4 0.8 1 2 0.01 9.3 5.7 0.1 2 9 9 16 8 28 0.67 Transcription factor zinc-finger zf-TFIIB PF13453.6 41 AVFM020000_00001 - 57 0.0042 16.4 0.8 2 2 0.00059 0.53 9.7 0.1 1 12 32 44 32 51 0.71 Transcription factor zinc-finger DNA_ligase_ZBD PF03119.16 27 AVFM020000_00001 - 57 0.0048 16.9 1.8 1 2 5.2e-05 0.046 13.7 0.1 2 10 9 17 9 25 0.87 NAD-dependent DNA ligase C4 zinc finger domain DNA_ligase_ZBD PF03119.16 27 AVFM020000_00001 - 57 0.0048 16.9 1.8 2 2 0.17 1.6e+02 2.5 0.2 2 6 33 37 32 39 0.79 NAD-dependent DNA ligase C4 zinc finger domain NOB1_Zn_bind PF08772.11 72 AVFM020000_00001 - 57 0.0056 16.8 2.2 1 2 0.0048 4.3 7.6 0.3 25 38 8 21 2 29 0.84 Nin one binding (NOB1) Zn-ribbon like NOB1_Zn_bind PF08772.11 72 AVFM020000_00001 - 57 0.0056 16.8 2.2 2 2 0.00085 0.77 10.0 0.1 24 38 31 45 22 53 0.85 Nin one binding (NOB1) Zn-ribbon like Nudix_N_2 PF14803.6 34 AVFM020000_00001 - 57 0.01 15.8 1.1 1 3 2.5 2.3e+03 -1.4 0.0 27 31 3 7 2 8 0.82 Nudix N-terminal Nudix_N_2 PF14803.6 34 AVFM020000_00001 - 57 0.01 15.8 1.1 2 3 0.00057 0.51 10.3 0.0 3 16 9 22 8 27 0.89 Nudix N-terminal Nudix_N_2 PF14803.6 34 AVFM020000_00001 - 57 0.01 15.8 1.1 3 3 0.063 56 3.8 0.0 2 6 32 36 31 45 0.79 Nudix N-terminal Elf1 PF05129.13 78 AVFM020000_00001 - 57 0.013 15.6 0.2 1 1 1.9e-05 0.017 15.2 0.2 24 63 9 48 5 51 0.91 Transcription elongation factor Elf1 like zf-NADH-PPase PF09297.11 32 AVFM020000_00001 - 57 0.014 15.0 2.0 1 2 0.00035 0.31 10.7 0.1 6 14 9 17 8 21 0.87 NADH pyrophosphatase zinc ribbon domain zf-NADH-PPase PF09297.11 32 AVFM020000_00001 - 57 0.014 15.0 2.0 2 2 0.052 46 3.8 0.2 23 29 32 38 31 39 0.60 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 49 AVFM020000_00001 - 57 0.016 15.2 1.0 1 1 3e-05 0.027 14.5 1.0 12 37 6 39 2 47 0.81 Double zinc ribbon zf-DNL PF05180.12 64 AVFM020000_00001 - 57 0.017 15.1 0.6 1 1 4e-05 0.035 14.0 0.6 6 47 9 50 3 56 0.86 DNL zinc finger Zn_ribbon_SprT PF17283.2 38 AVFM020000_00001 - 57 0.024 14.6 2.5 1 1 4.6e-05 0.041 13.8 2.5 7 34 9 41 8 45 0.78 SprT-like zinc ribbon domain DpnI PF06044.12 182 AVFM020000_00001 - 57 0.033 13.8 0.4 1 1 4.7e-05 0.042 13.5 0.4 32 72 7 49 3 54 0.79 Dam-replacing family zf-C4_Topoisom PF01396.19 39 AVFM020000_00001 - 57 0.033 14.0 1.9 1 2 0.013 11 5.8 0.1 3 10 8 15 7 23 0.79 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 AVFM020000_00001 - 57 0.033 14.0 1.9 2 2 0.0044 3.9 7.3 0.1 3 13 32 43 31 46 0.79 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.6 23 AVFM020000_00001 - 57 0.042 13.6 3.5 1 2 0.005 4.5 7.1 0.3 16 22 9 15 3 21 0.79 zinc-ribbon domain zinc_ribbon_2 PF13240.6 23 AVFM020000_00001 - 57 0.042 13.6 3.5 2 2 0.0039 3.5 7.5 0.3 15 20 32 37 27 40 0.75 zinc-ribbon domain zf-LITAF-like PF10601.9 70 AVFM020000_00001 - 57 0.046 14.0 2.6 1 2 0.02 18 5.7 0.2 5 22 6 23 3 29 0.79 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 AVFM020000_00001 - 57 0.046 14.0 2.6 2 2 0.0015 1.3 9.3 0.2 4 18 29 43 26 53 0.79 LITAF-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 43 AVFM020000_00001 - 57 0.07 12.6 3.3 1 1 0.00076 0.68 9.5 3.3 3 25 9 36 7 48 0.73 TFIIB zinc-binding HypA PF01155.19 112 AVFM020000_00001 - 57 0.079 13.0 0.7 1 1 0.00011 0.1 12.6 0.7 71 107 7 49 3 53 0.70 Hydrogenase/urease nickel incorporation, metallochaperone, hypA GTP_EFTU PF00009.27 194 AVFM020000_00002 - 639 5.4e-59 199.0 0.3 1 1 3.8e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 AVFM020000_00002 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 AVFM020000_00002 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 AVFM020000_00002 - 639 1.2e-16 60.5 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 AVFM020000_00002 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 2.9e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 AVFM020000_00002 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 AVFM020000_00002 - 639 0.0011 19.3 0.0 1 1 1.4e-06 0.0028 18.0 0.0 4 58 266 314 264 318 0.83 Elongation factor Tu domain 2 RF3_C PF16658.5 131 AVFM020000_00002 - 639 0.015 15.1 0.0 1 1 1.6e-05 0.031 14.1 0.0 42 82 377 417 344 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 AVFM020000_00002 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 AVFM020000_00002 - 639 0.047 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family TnpV PF14198.6 112 AVFM020000_00003 - 124 2.8e-43 146.4 0.5 1 1 1.8e-47 3.2e-43 146.2 0.5 1 112 12 122 12 122 0.98 Transposon-encoded protein TnpV VirB8 PF04335.13 214 AY190284_00001 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 AY190284_00001 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 AY190285_00001 - 295 2.8e-55 187.3 1.9 1 1 2.6e-59 4.6e-55 186.6 1.9 2 211 29 270 28 270 0.92 Conjugal transfer protein TrbI PF03743.14 187 AY190286_00001 - 138 5.8e-30 104.5 0.0 1 1 7.3e-34 6.6e-30 104.3 0.0 61 187 2 122 1 122 0.93 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 AY190286_00001 - 138 0.0049 16.0 0.1 1 1 6.9e-07 0.0062 15.7 0.1 31 81 69 119 50 124 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 AY190287_00001 - 332 6.4e-54 182.8 0.0 1 1 1.1e-56 7.4e-54 182.6 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 AY190287_00001 - 332 6.1e-05 23.6 0.0 1 1 1.9e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 AY190287_00001 - 332 0.00016 21.1 0.0 1 1 3.7e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 AY190287_00001 - 332 0.00022 20.8 0.0 1 1 5.7e-07 0.00038 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 AY190287_00001 - 332 0.0014 18.9 0.0 1 1 3.9e-06 0.0026 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 AY190287_00001 - 332 0.0026 17.5 0.0 1 1 7.9e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 AY190287_00001 - 332 0.003 17.3 0.0 1 1 7.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 AY190287_00001 - 332 0.0037 17.3 0.0 1 1 1.1e-05 0.0073 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 AY190287_00001 - 332 0.0049 15.9 0.0 1 1 1.1e-05 0.0072 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 AY190287_00001 - 332 0.0072 16.3 0.0 1 1 1.9e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 AY190287_00001 - 332 0.0087 15.4 0.0 1 1 2.1e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 AY190287_00001 - 332 0.0088 16.0 0.0 1 1 1.8e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 AY190287_00001 - 332 0.018 14.8 0.0 1 1 5.5e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 AY190287_00001 - 332 0.019 15.0 0.0 1 1 6.1e-05 0.041 13.9 0.0 10 50 147 186 130 244 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 AY190287_00001 - 332 0.022 13.7 0.0 1 1 5.1e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 AY190287_00001 - 332 0.023 14.8 0.1 1 1 6.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 AY190287_00001 - 332 0.024 14.4 0.0 1 1 8e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 AY190287_00001 - 332 0.032 14.3 0.1 1 1 0.00016 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 AY190287_00001 - 332 0.035 13.5 0.0 1 1 8.4e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 AY190287_00001 - 332 0.037 14.4 0.0 1 2 9.9 6.6e+03 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 AY190287_00001 - 332 0.037 14.4 0.0 2 2 0.00016 0.11 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 AY190287_00001 - 332 0.037 13.8 0.0 1 1 9.4e-05 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 AY190287_00001 - 332 0.039 13.2 0.0 1 1 0.0001 0.069 12.4 0.0 14 49 158 193 145 207 0.83 Zeta toxin PRK PF00485.18 197 AY190287_00001 - 332 0.052 13.3 0.0 1 1 0.00016 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 AY190287_00001 - 332 0.063 11.9 0.0 1 1 0.00013 0.086 11.4 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 AY190287_00001 - 332 0.065 13.6 0.0 1 1 0.00015 0.1 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 AY190287_00001 - 332 0.085 12.8 0.4 1 1 0.00034 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 AY190287_00001 - 332 0.089 12.7 0.0 1 1 0.0003 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Phage_pRha PF09669.10 88 AY190288_00001 - 230 1.8e-23 82.9 0.1 1 1 3e-27 5.3e-23 81.4 0.1 2 88 38 125 37 125 0.93 Phage regulatory protein Rha (Phage_pRha) GTP_EFTU PF00009.27 194 AY190525_00001 - 639 9e-59 198.3 0.3 1 1 6.3e-62 1.2e-58 197.8 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 AY190525_00001 - 639 2.6e-23 82.1 0.0 1 2 1.4 2.8e+03 -1.9 0.0 81 97 63 79 58 99 0.70 Elongation factor G, domain IV EFG_IV PF03764.18 121 AY190525_00001 - 639 2.6e-23 82.1 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 AY190525_00001 - 639 1.1e-16 60.6 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 AY190525_00001 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 2.9e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 AY190525_00001 - 639 1e-06 28.8 0.1 1 1 1.2e-09 2.4e-06 27.6 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 AY190525_00001 - 639 0.0012 19.2 0.0 1 1 1.4e-06 0.0028 18.0 0.0 4 58 266 314 264 318 0.83 Elongation factor Tu domain 2 RF3_C PF16658.5 131 AY190525_00001 - 639 0.015 15.1 0.0 1 1 1.6e-05 0.031 14.1 0.0 42 82 377 417 344 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 AY190525_00001 - 639 0.021 14.1 0.1 1 1 2e-05 0.039 13.2 0.1 9 76 8 82 3 90 0.72 Septin AIG1 PF04548.16 212 AY190525_00001 - 639 0.043 13.1 0.0 1 1 5.4e-05 0.11 11.8 0.0 32 62 51 81 43 109 0.83 AIG1 family Adenyl_transf PF04439.12 279 AY701528_00002 - 288 1.2e-115 385.5 6.3 1 1 7.3e-120 1.3e-115 385.3 6.3 1 276 1 274 1 277 0.99 Streptomycin adenylyltransferase PcfJ PF14284.6 144 AY701528_00003 - 233 2.9e-05 24.0 2.2 1 2 0.42 3.8e+03 -2.3 0.0 56 65 49 58 14 83 0.63 PcfJ-like protein PcfJ PF14284.6 144 AY701528_00003 - 233 2.9e-05 24.0 2.2 2 2 3.2e-09 2.9e-05 24.0 2.2 3 133 90 216 88 226 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 AY701528_00003 - 233 0.0053 16.7 3.0 1 1 1.6e-06 0.015 15.3 3.0 37 126 71 205 10 215 0.75 Intein splicing domain GTP_EFTU PF00009.27 194 AY701528_00005 - 639 8.9e-59 198.3 0.3 1 1 6.3e-62 1.2e-58 197.8 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 AY701528_00005 - 639 2.6e-23 82.1 0.0 1 2 1.4 2.8e+03 -1.9 0.0 81 97 63 79 58 99 0.70 Elongation factor G, domain IV EFG_IV PF03764.18 121 AY701528_00005 - 639 2.6e-23 82.1 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 AY701528_00005 - 639 8.5e-17 61.0 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 AY701528_00005 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 AY701528_00005 - 639 9.7e-07 28.9 0.1 1 1 1.2e-09 2.4e-06 27.6 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 AY701528_00005 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 AY701528_00005 - 639 0.018 14.9 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 AY701528_00005 - 639 0.021 14.1 0.1 1 1 2e-05 0.039 13.2 0.1 9 76 8 82 3 90 0.72 Septin AIG1 PF04548.16 212 AY701528_00005 - 639 0.043 13.1 0.0 1 1 5.4e-05 0.11 11.8 0.0 32 62 51 81 43 109 0.83 AIG1 family DUF4111 PF13427.6 103 AY701528_00007 - 258 2.6e-26 91.8 0.0 1 3 0.7 3.2e+03 -1.6 0.0 60 80 3 23 2 25 0.81 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 AY701528_00007 - 258 2.6e-26 91.8 0.0 2 3 1.9 8.4e+03 -3.0 0.0 8 22 52 66 50 72 0.73 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 AY701528_00007 - 258 2.6e-26 91.8 0.0 3 3 2.6e-29 1.1e-25 89.7 0.0 1 103 148 250 148 250 0.98 Domain of unknown function (DUF4111) Polbeta PF18765.1 93 AY701528_00007 - 258 1.1e-09 38.2 0.0 1 2 1.2e-12 5.4e-09 36.0 0.0 8 74 22 92 11 97 0.77 Polymerase beta, Nucleotidyltransferase Polbeta PF18765.1 93 AY701528_00007 - 258 1.1e-09 38.2 0.0 2 2 0.45 2e+03 -1.1 0.0 17 42 103 134 98 151 0.71 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 95 AY701528_00007 - 258 3e-06 27.4 0.0 1 1 1.4e-09 6.5e-06 26.4 0.0 14 75 25 88 11 105 0.75 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 199 AY701528_00007 - 258 0.00019 21.4 0.0 1 1 6.7e-08 0.0003 20.7 0.0 88 138 21 71 3 83 0.86 Adenylate cyclase NT domain AAA_18 PF13238.6 130 AY701528_00008 - 181 4.8e-14 53.0 0.0 1 1 1.2e-16 6.3e-14 52.6 0.0 1 122 7 133 7 141 0.86 AAA domain AAA_33 PF13671.6 143 AY701528_00008 - 181 2.4e-10 40.8 0.0 1 1 5.7e-13 2.9e-10 40.4 0.0 2 136 7 144 6 147 0.81 AAA domain CPT PF07931.12 174 AY701528_00008 - 181 7.5e-10 38.9 0.0 1 1 2.8e-12 1.4e-09 38.0 0.0 1 172 4 172 4 174 0.80 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 199 AY701528_00008 - 181 1.5e-07 30.9 0.0 1 1 7e-10 3.6e-07 29.7 0.0 18 160 6 138 2 172 0.74 Zeta toxin AAA PF00004.29 132 AY701528_00008 - 181 1.1e-05 25.8 0.1 1 2 1.5e-07 7.7e-05 23.1 0.0 2 34 8 41 7 84 0.77 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 AY701528_00008 - 181 1.1e-05 25.8 0.1 2 2 2.2 1.1e+03 -0.0 0.0 105 131 109 135 92 136 0.71 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 136 AY701528_00008 - 181 2.1e-05 25.0 0.0 1 1 7.2e-08 3.7e-05 24.2 0.0 1 128 10 131 10 138 0.79 AAA domain AAA_28 PF13521.6 163 AY701528_00008 - 181 0.00017 21.9 0.0 1 2 7.8e-07 0.0004 20.7 0.0 2 62 7 71 6 85 0.62 AAA domain AAA_28 PF13521.6 163 AY701528_00008 - 181 0.00017 21.9 0.0 2 2 6.7 3.4e+03 -1.9 0.0 112 129 108 127 94 157 0.52 AAA domain AAA_22 PF13401.6 137 AY701528_00008 - 181 0.00023 21.4 0.0 1 2 1.9e-06 0.00099 19.4 0.0 4 33 3 32 1 84 0.83 AAA domain AAA_22 PF13401.6 137 AY701528_00008 - 181 0.00023 21.4 0.0 2 2 2 1e+03 -0.1 0.0 61 98 120 156 96 171 0.74 AAA domain AAA_14 PF13173.6 131 AY701528_00008 - 181 0.0008 19.4 0.0 1 1 2.5e-06 0.0013 18.8 0.0 2 123 4 137 3 145 0.70 AAA domain RuvB_N PF05496.12 159 AY701528_00008 - 181 0.0023 17.7 0.1 1 2 1.1e-05 0.0057 16.4 0.0 36 60 7 31 3 49 0.85 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 AY701528_00008 - 181 0.0023 17.7 0.1 2 2 7.1 3.6e+03 -2.5 0.0 98 114 113 129 105 160 0.72 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 146 AY701528_00008 - 181 0.0023 18.3 0.0 1 2 8.3e-06 0.0042 17.4 0.0 9 35 3 29 1 75 0.87 AAA domain AAA_19 PF13245.6 146 AY701528_00008 - 181 0.0023 18.3 0.0 2 2 9 4.6e+03 -2.2 0.0 114 119 128 134 98 171 0.62 AAA domain ABC_tran PF00005.27 137 AY701528_00008 - 181 0.0028 18.1 0.2 1 1 6.3e-06 0.0032 18.0 0.2 9 45 2 37 1 172 0.83 ABC transporter KTI12 PF08433.10 272 AY701528_00008 - 181 0.0044 16.5 0.1 1 2 1.8e-05 0.0092 15.5 0.0 3 42 6 44 5 88 0.73 Chromatin associated protein KTI12 KTI12 PF08433.10 272 AY701528_00008 - 181 0.0044 16.5 0.1 2 2 3.3 1.7e+03 -1.8 0.0 111 122 117 128 97 167 0.56 Chromatin associated protein KTI12 AAA_16 PF13191.6 170 AY701528_00008 - 181 0.0046 17.4 0.0 1 1 1.1e-05 0.0056 17.1 0.0 22 63 2 44 1 147 0.84 AAA ATPase domain DUF2075 PF09848.9 363 AY701528_00008 - 181 0.0048 16.2 0.4 1 1 1.1e-05 0.0056 16.0 0.4 2 29 5 32 4 146 0.90 Uncharacterized conserved protein (DUF2075) ATPase_2 PF01637.18 233 AY701528_00008 - 181 0.0076 16.2 0.4 1 2 0.0042 2.2 8.2 0.0 19 49 3 32 1 50 0.75 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 AY701528_00008 - 181 0.0076 16.2 0.4 2 2 0.015 7.8 6.3 0.2 48 112 102 172 93 180 0.65 ATPase domain predominantly from Archaea APS_kinase PF01583.20 158 AY701528_00008 - 181 0.0079 16.1 0.0 1 2 0.00035 0.18 11.7 0.0 1 46 3 46 3 95 0.64 Adenylylsulphate kinase APS_kinase PF01583.20 158 AY701528_00008 - 181 0.0079 16.1 0.0 2 2 0.2 1e+02 2.7 0.0 45 77 119 151 97 175 0.82 Adenylylsulphate kinase Rad17 PF03215.15 186 AY701528_00008 - 181 0.0086 16.0 0.0 1 2 7.7e-05 0.039 13.9 0.0 45 71 4 30 1 40 0.88 Rad17 P-loop domain Rad17 PF03215.15 186 AY701528_00008 - 181 0.0086 16.0 0.0 2 2 1.7 8.8e+02 -0.3 0.0 113 146 110 145 100 167 0.71 Rad17 P-loop domain T2SSE PF00437.20 273 AY701528_00008 - 181 0.0086 15.2 0.0 1 2 3.2e-05 0.016 14.3 0.0 130 158 5 33 1 75 0.82 Type II/IV secretion system protein T2SSE PF00437.20 273 AY701528_00008 - 181 0.0086 15.2 0.0 2 2 3.2 1.6e+03 -2.1 0.0 25 25 140 140 100 177 0.50 Type II/IV secretion system protein AAA_30 PF13604.6 192 AY701528_00008 - 181 0.0092 15.7 0.1 1 1 3.1e-05 0.016 15.0 0.1 17 40 3 26 1 39 0.82 AAA domain ATPase PF06745.13 231 AY701528_00008 - 181 0.0098 15.3 1.3 1 2 3.4e-05 0.017 14.5 0.1 18 37 3 22 1 35 0.87 KaiC ATPase PF06745.13 231 AY701528_00008 - 181 0.0098 15.3 1.3 2 2 1.6 8.2e+02 -0.8 0.1 100 112 129 141 99 176 0.47 KaiC AAA_24 PF13479.6 197 AY701528_00008 - 181 0.0099 15.6 0.8 1 1 2.7e-05 0.014 15.2 0.8 3 23 5 30 3 173 0.84 AAA domain Ploopntkinase1 PF18748.1 196 AY701528_00008 - 181 0.011 15.3 0.1 1 2 0.082 42 3.6 0.0 16 41 3 28 1 41 0.82 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 AY701528_00008 - 181 0.011 15.3 0.1 2 2 0.0009 0.46 10.0 0.0 93 165 72 144 54 168 0.77 P-loop Nucleotide Kinase1 SRP54 PF00448.22 196 AY701528_00008 - 181 0.014 15.1 0.2 1 2 6e-05 0.031 13.9 0.1 3 40 6 42 4 49 0.84 SRP54-type protein, GTPase domain SRP54 PF00448.22 196 AY701528_00008 - 181 0.014 15.1 0.2 2 2 4.9 2.5e+03 -2.1 0.0 71 80 118 127 97 169 0.56 SRP54-type protein, GTPase domain DnaB_C PF03796.15 255 AY701528_00008 - 181 0.016 14.6 0.6 1 2 0.00025 0.13 11.6 0.0 17 47 2 32 1 42 0.83 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 AY701528_00008 - 181 0.016 14.6 0.6 2 2 0.33 1.7e+02 1.4 0.2 48 116 103 164 96 178 0.48 DnaB-like helicase C terminal domain NTPase_1 PF03266.15 168 AY701528_00008 - 181 0.021 14.8 0.6 1 2 9.7e-05 0.049 13.5 0.3 2 22 7 27 6 35 0.85 NTPase NTPase_1 PF03266.15 168 AY701528_00008 - 181 0.021 14.8 0.6 2 2 3 1.5e+03 -1.1 0.0 82 82 116 116 62 168 0.64 NTPase TIP49 PF06068.13 351 AY701528_00008 - 181 0.034 13.3 0.3 1 2 0.00022 0.11 11.6 0.0 50 77 4 31 1 46 0.84 TIP49 P-loop domain TIP49 PF06068.13 351 AY701528_00008 - 181 0.034 13.3 0.3 2 2 1.1 5.9e+02 -0.6 0.2 142 182 120 160 100 174 0.71 TIP49 P-loop domain Sigma54_activat PF00158.26 168 AY701528_00008 - 181 0.038 13.7 0.0 1 1 0.00013 0.066 12.9 0.0 25 68 7 57 1 89 0.76 Sigma-54 interaction domain dNK PF01712.19 204 AY701528_00008 - 181 0.039 13.8 0.2 1 2 0.0018 0.94 9.3 0.0 1 52 7 75 7 77 0.66 Deoxynucleoside kinase dNK PF01712.19 204 AY701528_00008 - 181 0.039 13.8 0.2 2 2 0.21 1.1e+02 2.6 0.2 114 156 98 137 92 173 0.64 Deoxynucleoside kinase Cytidylate_kin2 PF13189.6 179 AY701528_00008 - 181 0.055 13.6 1.9 1 2 0.038 19 5.3 0.2 1 23 6 28 6 34 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 AY701528_00008 - 181 0.055 13.6 1.9 2 2 0.0049 2.5 8.2 0.1 107 147 98 138 30 143 0.82 Cytidylate kinase-like family PhoH PF02562.16 205 AY701528_00008 - 181 0.065 12.7 0.1 1 1 0.00028 0.14 11.5 0.1 18 49 3 34 1 36 0.84 PhoH-like protein AAA_11 PF13086.6 261 AY701528_00008 - 181 0.067 13.0 1.4 1 1 0.00024 0.12 12.1 1.4 16 42 3 29 1 176 0.85 AAA domain RNA_helicase PF00910.22 107 AY701528_00008 - 181 0.082 13.3 0.0 1 1 0.00031 0.16 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase AAA_25 PF13481.6 194 AY701528_00008 - 181 0.084 12.4 0.2 1 3 0.00098 0.5 9.9 0.1 32 51 3 22 1 28 0.86 AAA domain AAA_25 PF13481.6 194 AY701528_00008 - 181 0.084 12.4 0.2 2 3 5.4 2.8e+03 -2.3 0.0 118 174 56 74 30 84 0.49 AAA domain AAA_25 PF13481.6 194 AY701528_00008 - 181 0.084 12.4 0.2 3 3 1.4 7.2e+02 -0.4 0.0 61 90 94 122 90 169 0.69 AAA domain MKT1_N PF12247.8 90 AY701528_00008 - 181 0.088 13.2 0.0 1 1 0.00054 0.27 11.6 0.0 14 51 39 74 37 153 0.89 Temperature dependent protein affecting M2 dsRNA replication APH PF01636.23 240 AY701528_00009 - 265 1.2e-15 58.1 0.0 1 2 2.1e-18 7.6e-15 55.5 0.0 5 211 9 207 5 221 0.84 Phosphotransferase enzyme family APH PF01636.23 240 AY701528_00009 - 265 1.2e-15 58.1 0.0 2 2 0.098 3.5e+02 0.9 0.0 58 98 220 261 209 265 0.83 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 AY701528_00009 - 265 1.8e-09 37.5 5.3 1 1 9.4e-13 3.4e-09 36.6 4.7 45 186 72 205 66 229 0.85 Choline/ethanolamine kinase EcKinase PF02958.20 294 AY701528_00009 - 265 0.00022 20.7 0.7 1 3 0.83 3e+03 -2.8 0.0 90 108 22 40 11 45 0.79 Ecdysteroid kinase EcKinase PF02958.20 294 AY701528_00009 - 265 0.00022 20.7 0.7 2 3 6.1e-08 0.00022 20.7 0.7 148 262 90 207 73 216 0.59 Ecdysteroid kinase EcKinase PF02958.20 294 AY701528_00009 - 265 0.00022 20.7 0.7 3 3 0.3 1.1e+03 -1.3 0.0 264 292 234 261 216 263 0.68 Ecdysteroid kinase Fructosamin_kin PF03881.14 288 AY701528_00009 - 265 0.023 13.9 0.6 1 2 0.43 1.5e+03 -1.9 0.0 52 75 34 57 13 64 0.60 Fructosamine kinase Fructosamin_kin PF03881.14 288 AY701528_00009 - 265 0.023 13.9 0.6 2 2 1.4e-05 0.05 12.8 0.3 189 241 165 220 113 231 0.73 Fructosamine kinase Ribosomal_S13 PF00416.22 128 AY701528_00009 - 265 0.029 14.8 1.8 1 3 0.99 3.6e+03 -1.7 0.0 73 102 32 61 26 65 0.69 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 AY701528_00009 - 265 0.029 14.8 1.8 2 3 2.1e-05 0.076 13.4 0.1 37 91 115 173 82 187 0.81 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 AY701528_00009 - 265 0.029 14.8 1.8 3 3 0.74 2.7e+03 -1.3 0.1 51 76 228 254 215 264 0.54 Ribosomal protein S13/S18 DUF4111 PF13427.6 103 AY701528_00010 - 264 1.6e-23 82.9 0.0 1 2 0.75 3.4e+03 -1.7 0.0 15 30 10 25 7 29 0.79 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 AY701528_00010 - 264 1.6e-23 82.9 0.0 2 2 1.3e-26 5.6e-23 81.1 0.0 1 100 152 249 152 251 0.96 Domain of unknown function (DUF4111) NTP_transf_2 PF01909.23 95 AY701528_00010 - 264 1.2e-06 28.7 0.6 1 1 5.4e-10 2.4e-06 27.7 0.5 4 48 18 99 11 163 0.69 Nucleotidyltransferase domain Polbeta PF18765.1 93 AY701528_00010 - 264 0.00032 20.7 0.1 1 1 2e-07 0.00088 19.3 0.1 3 63 18 80 16 98 0.70 Polymerase beta, Nucleotidyltransferase Adenyl_cycl_N PF12633.7 199 AY701528_00010 - 264 0.022 14.6 0.0 1 1 7.8e-06 0.035 14.0 0.0 89 152 23 87 4 98 0.81 Adenylate cyclase NT domain Acetyltransf_1 PF00583.25 117 AY701528_00011 - 142 9e-17 61.4 0.0 1 1 4.3e-20 1.1e-16 61.1 0.0 19 116 25 123 7 124 0.83 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 127 AY701528_00011 - 142 1.4e-09 38.0 0.0 1 1 6.9e-13 1.8e-09 37.6 0.0 20 105 28 123 7 131 0.86 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 76 AY701528_00011 - 142 4.8e-08 33.3 0.1 1 1 3.1e-11 7.8e-08 32.6 0.1 5 73 41 123 37 123 0.68 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 AY701528_00011 - 142 0.0013 18.7 0.0 1 1 7.7e-07 0.002 18.1 0.0 23 79 69 126 48 133 0.85 FR47-like protein Acetyltransf_CG PF14542.6 80 AY701528_00011 - 142 0.0045 17.1 0.0 1 1 3.1e-06 0.0078 16.3 0.0 19 55 62 98 41 101 0.80 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 138 AY701528_00011 - 142 0.007 17.0 0.0 1 1 3.2e-06 0.0082 16.8 0.0 49 136 35 123 4 125 0.77 Acetyltransferase (GNAT) domain MOZ_SAS PF01853.18 179 AY701528_00011 - 142 0.034 13.8 0.0 1 1 1.6e-05 0.04 13.6 0.0 76 102 66 92 9 115 0.75 MOZ/SAS family APH PF01636.23 240 AY701528_00012 - 297 2.3e-23 83.4 0.0 1 1 3.3e-27 3e-23 83.0 0.0 2 238 18 251 17 253 0.86 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 AY701528_00012 - 297 0.0019 17.8 1.2 1 1 5.1e-07 0.0046 16.6 1.2 68 175 112 211 101 226 0.72 Choline/ethanolamine kinase HTH_23 PF13384.6 50 AY701528_00013 - 167 0.0036 17.1 0.0 1 2 1e-05 0.045 13.6 0.0 21 37 41 57 34 66 0.91 Homeodomain-like domain HTH_23 PF13384.6 50 AY701528_00013 - 167 0.0036 17.1 0.0 2 2 0.086 3.8e+02 1.0 0.0 32 48 96 110 94 112 0.83 Homeodomain-like domain HTH_17 PF12728.7 51 AY701528_00013 - 167 0.046 13.9 0.7 1 2 0.00027 1.2 9.4 0.1 7 35 43 70 40 74 0.81 Helix-turn-helix domain HTH_17 PF12728.7 51 AY701528_00013 - 167 0.046 13.9 0.7 2 2 0.032 1.4e+02 2.7 0.0 15 40 95 121 95 133 0.69 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 AY701528_00013 - 167 0.068 12.9 0.0 1 1 4.4e-05 0.2 11.4 0.0 32 47 43 58 40 59 0.92 Sigma-70, region 4 HTH_28 PF13518.6 52 AY701528_00013 - 167 0.097 12.8 0.0 1 1 4e-05 0.18 12.0 0.0 14 30 39 55 25 58 0.84 Helix-turn-helix domain HxlR PF01638.17 91 AY701528_00014 - 103 2.7e-22 78.4 0.0 1 1 1.3e-25 3.2e-22 78.2 0.0 1 71 30 100 30 103 0.97 HxlR-like helix-turn-helix HTH_5 PF01022.20 47 AY701528_00014 - 103 0.00012 21.9 0.0 1 1 8.1e-08 0.00021 21.1 0.0 7 46 39 79 38 80 0.95 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 61 AY701528_00014 - 103 0.00023 21.1 0.0 1 1 1.4e-07 0.00036 20.5 0.0 15 57 39 81 38 82 0.94 Helix-turn-helix domain MarR PF01047.22 59 AY701528_00014 - 103 0.00035 20.4 0.0 1 1 2.3e-07 0.00059 19.7 0.0 16 51 46 82 41 85 0.92 MarR family MarR_2 PF12802.7 62 AY701528_00014 - 103 0.00061 19.6 0.0 1 1 3.9e-07 0.00099 19.0 0.0 10 54 39 81 38 85 0.89 MarR family PadR PF03551.14 75 AY701528_00014 - 103 0.0015 18.5 0.1 1 1 9.4e-07 0.0024 17.8 0.1 27 71 58 100 48 102 0.85 Transcriptional regulator PadR-like family HTH_34 PF13601.6 80 AY701528_00014 - 103 0.0064 16.6 0.0 1 1 3.5e-06 0.0089 16.2 0.0 12 66 45 99 38 101 0.82 Winged helix DNA-binding domain Putative_PNPOx PF01243.20 88 AY701528_00015 - 133 4.3e-12 46.0 0.0 1 1 1e-15 6.2e-12 45.5 0.0 3 87 5 85 3 86 0.97 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 149 AY701528_00015 - 133 3.7e-06 26.6 0.0 1 1 6.8e-10 4.1e-06 26.5 0.0 2 98 3 95 2 127 0.84 Pyridoxamine 5'-phosphate oxidase like Pyridox_ox_2 PF12900.7 141 AY701528_00015 - 133 0.063 13.3 0.0 1 1 1.2e-05 0.072 13.1 0.0 3 62 5 66 3 108 0.84 Pyridoxamine 5'-phosphate oxidase IstB_IS21 PF01695.17 178 AY701528_00016 - 252 1.2e-58 197.8 1.9 1 2 0.28 2.4e+02 1.3 0.1 80 124 4 48 2 55 0.84 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 AY701528_00016 - 252 1.2e-58 197.8 1.9 2 2 4.2e-61 3.6e-58 196.2 0.2 5 178 58 231 52 231 0.98 IstB-like ATP binding protein Bac_DnaA PF00308.18 219 AY701528_00016 - 252 1.3e-08 35.0 0.6 1 2 3.6 3.1e+03 -2.2 0.1 90 115 25 50 12 67 0.60 Bacterial dnaA protein Bac_DnaA PF00308.18 219 AY701528_00016 - 252 1.3e-08 35.0 0.6 2 2 1.5e-11 1.3e-08 35.0 0.6 37 136 103 200 97 230 0.89 Bacterial dnaA protein RNA_helicase PF00910.22 107 AY701528_00016 - 252 1.7e-05 25.1 0.4 1 2 0.21 1.8e+02 2.6 0.1 41 97 24 80 4 83 0.71 RNA helicase RNA_helicase PF00910.22 107 AY701528_00016 - 252 1.7e-05 25.1 0.4 2 2 5.5e-07 0.00047 20.5 0.0 1 74 103 187 103 206 0.86 RNA helicase PhoH PF02562.16 205 AY701528_00016 - 252 3.5e-05 23.4 0.0 1 1 9.5e-08 8.2e-05 22.2 0.0 12 75 93 155 80 185 0.76 PhoH-like protein AAA_22 PF13401.6 137 AY701528_00016 - 252 5.3e-05 23.5 0.2 1 2 3.4e-05 0.029 14.6 0.1 5 48 100 137 95 143 0.80 AAA domain AAA_22 PF13401.6 137 AY701528_00016 - 252 5.3e-05 23.5 0.2 2 2 0.011 9.4 6.5 0.0 80 115 146 189 129 200 0.67 AAA domain AAA PF00004.29 132 AY701528_00016 - 252 6.8e-05 23.3 0.1 1 1 1.4e-07 0.00012 22.5 0.1 1 74 103 176 103 230 0.70 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 168 AY701528_00016 - 252 7.7e-05 22.5 0.1 1 2 6e-06 0.0051 16.5 0.0 18 66 96 144 84 152 0.85 Sigma-54 interaction domain Sigma54_activat PF00158.26 168 AY701528_00016 - 252 7.7e-05 22.5 0.1 2 2 0.053 45 3.7 0.0 96 122 164 191 155 204 0.76 Sigma-54 interaction domain AAA_16 PF13191.6 170 AY701528_00016 - 252 8.1e-05 23.1 0.0 1 1 1.7e-07 0.00015 22.2 0.0 25 103 101 168 91 224 0.74 AAA ATPase domain CbiA PF01656.23 128 AY701528_00016 - 252 0.00047 20.2 0.0 1 1 9.3e-07 0.00079 19.5 0.0 3 43 104 144 103 250 0.64 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.6 197 AY701528_00016 - 252 0.00062 19.5 0.7 1 1 1.8e-06 0.0016 18.2 0.7 2 76 100 172 99 210 0.76 AAA domain AAA_14 PF13173.6 131 AY701528_00016 - 252 0.00073 19.6 0.3 1 2 3.6 3.1e+03 -1.8 0.1 52 75 23 43 3 65 0.48 AAA domain AAA_14 PF13173.6 131 AY701528_00016 - 252 0.00073 19.6 0.3 2 2 8.6e-07 0.00073 19.6 0.3 3 89 101 189 99 228 0.67 AAA domain AAA_7 PF12775.7 181 AY701528_00016 - 252 0.00099 18.7 0.1 1 2 3.1e-06 0.0027 17.3 0.0 29 91 96 157 85 169 0.86 P-loop containing dynein motor region AAA_7 PF12775.7 181 AY701528_00016 - 252 0.00099 18.7 0.1 2 2 6.3 5.4e+03 -3.3 0.0 23 178 218 233 209 237 0.56 P-loop containing dynein motor region AFG1_ATPase PF03969.16 362 AY701528_00016 - 252 0.0026 16.7 0.1 1 1 4.3e-06 0.0036 16.2 0.1 24 208 64 242 44 248 0.73 AFG1-like ATPase NTPase_1 PF03266.15 168 AY701528_00016 - 252 0.0033 17.4 1.3 1 2 0.028 24 4.8 0.2 1 20 102 121 102 132 0.80 NTPase NTPase_1 PF03266.15 168 AY701528_00016 - 252 0.0033 17.4 1.3 2 2 0.00016 0.14 12.1 0.1 67 129 125 198 116 218 0.77 NTPase NACHT PF05729.12 166 AY701528_00016 - 252 0.0033 17.4 0.2 1 1 1.6e-05 0.014 15.4 0.1 3 38 103 133 101 200 0.76 NACHT domain AAA_25 PF13481.6 194 AY701528_00016 - 252 0.0075 15.9 0.3 1 3 1.2 9.9e+02 -0.8 0.0 126 158 16 50 5 74 0.68 AAA domain AAA_25 PF13481.6 194 AY701528_00016 - 252 0.0075 15.9 0.3 2 3 9e-05 0.077 12.6 0.0 29 60 96 127 67 133 0.89 AAA domain AAA_25 PF13481.6 194 AY701528_00016 - 252 0.0075 15.9 0.3 3 3 0.84 7.1e+02 -0.4 0.0 131 150 150 169 132 179 0.87 AAA domain AAA_5 PF07728.14 138 AY701528_00016 - 252 0.014 15.4 0.1 1 2 3.1 2.7e+03 -1.7 0.0 12 34 34 56 33 59 0.87 AAA domain (dynein-related subfamily) AAA_5 PF07728.14 138 AY701528_00016 - 252 0.014 15.4 0.1 2 2 5.3e-05 0.045 13.7 0.1 1 30 102 132 102 192 0.78 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 167 AY701528_00016 - 252 0.016 15.1 1.3 1 2 1.8 1.5e+03 -1.1 0.0 33 63 5 37 2 75 0.56 RsgA GTPase RsgA_GTPase PF03193.16 167 AY701528_00016 - 252 0.016 15.1 1.3 2 2 4.3e-05 0.037 13.9 0.0 82 119 83 120 68 137 0.78 RsgA GTPase Roc PF08477.13 120 AY701528_00016 - 252 0.032 14.5 0.0 1 1 0.0001 0.088 13.0 0.0 2 21 103 122 102 158 0.72 Ras of Complex, Roc, domain of DAPkinase AAA_33 PF13671.6 143 AY701528_00016 - 252 0.045 13.9 0.0 1 1 8.8e-05 0.075 13.2 0.0 2 93 103 217 103 230 0.71 AAA domain AAA_29 PF13555.6 61 AY701528_00016 - 252 0.072 12.8 0.2 1 2 1.1 9.7e+02 -0.4 0.0 37 57 36 57 34 60 0.74 P-loop containing region of AAA domain AAA_29 PF13555.6 61 AY701528_00016 - 252 0.072 12.8 0.2 2 2 0.00066 0.56 10.0 0.0 8 38 84 116 82 124 0.79 P-loop containing region of AAA domain rve PF00665.26 119 AY701528_00017 - 269 1.7e-13 50.8 0.0 1 1 3.8e-17 3.4e-13 49.8 0.0 29 115 1 97 1 99 0.97 Integrase core domain Phage_portal PF04860.12 314 AY701528_00017 - 269 0.0087 15.3 0.8 1 2 2e-05 0.18 11.0 0.0 188 235 94 143 80 162 0.83 Phage portal protein Phage_portal PF04860.12 314 AY701528_00017 - 269 0.0087 15.3 0.8 2 2 0.0057 51 2.9 0.2 36 89 172 227 153 264 0.69 Phage portal protein DDE_Tnp_IS1595 PF12762.7 153 AY701528_00018 - 345 3.8e-15 56.2 1.0 1 1 3.3e-18 6.5e-15 55.5 1.0 2 145 147 299 146 301 0.81 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 46 AY701528_00018 - 345 1.2e-06 28.4 1.3 1 1 1.5e-09 3e-06 27.1 1.3 7 45 38 80 36 81 0.91 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 35 AY701528_00018 - 345 0.0007 19.3 6.9 1 2 3.5e-07 0.0007 19.3 6.9 8 34 52 78 51 79 0.98 InsA N-terminal domain Zn_Tnp_IS1 PF03811.13 35 AY701528_00018 - 345 0.0007 19.3 6.9 2 2 2.5 5e+03 -2.7 0.1 15 23 200 208 196 210 0.70 InsA N-terminal domain HTH_30 PF13556.6 59 AY701528_00018 - 345 0.013 15.3 0.0 1 1 1.3e-05 0.025 14.4 0.0 10 29 108 127 102 139 0.91 PucR C-terminal helix-turn-helix domain HTH_23 PF13384.6 50 AY701528_00018 - 345 0.016 15.0 0.0 1 1 1.8e-05 0.036 13.9 0.0 16 40 109 133 102 139 0.87 Homeodomain-like domain PhnJ PF06007.11 275 AY701528_00018 - 345 0.061 12.3 0.1 1 1 6.1e-05 0.12 11.3 0.1 218 266 32 78 25 88 0.91 Phosphonate metabolism protein PhnJ Lar_restr_allev PF14354.6 62 AY701528_00018 - 345 0.062 13.7 3.3 1 1 3.2e-05 0.063 13.7 1.9 6 36 52 80 49 103 0.84 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 40 AY701528_00018 - 345 0.063 13.4 0.7 1 2 0.062 1.2e+02 2.9 0.2 27 38 50 62 38 63 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 AY701528_00018 - 345 0.063 13.4 0.7 2 2 0.0016 3.2 7.9 0.0 6 16 73 83 72 93 0.86 Zinc ribbon domain A2L_zn_ribbon PF08792.10 33 AY701528_00018 - 345 0.069 12.9 8.5 1 3 0.00027 0.54 10.0 0.2 20 32 48 60 47 61 0.86 A2L zinc ribbon domain A2L_zn_ribbon PF08792.10 33 AY701528_00018 - 345 0.069 12.9 8.5 2 3 0.0012 2.4 8.0 0.1 22 32 73 83 71 84 0.87 A2L zinc ribbon domain A2L_zn_ribbon PF08792.10 33 AY701528_00018 - 345 0.069 12.9 8.5 3 3 6.7 1.3e+04 -4.0 0.4 1 7 191 197 191 199 0.66 A2L zinc ribbon domain AAA_18 PF13238.6 130 AY701528_00019 - 181 1.9e-14 54.3 0.0 1 1 6e-17 2.6e-14 53.9 0.0 1 122 7 133 7 141 0.78 AAA domain AAA_33 PF13671.6 143 AY701528_00019 - 181 3.6e-10 40.2 0.0 1 1 1.2e-12 5.2e-10 39.6 0.0 2 135 7 143 6 146 0.79 AAA domain CPT PF07931.12 174 AY701528_00019 - 181 1.6e-09 37.9 0.0 1 1 7.2e-12 3.1e-09 36.9 0.0 1 172 4 172 4 174 0.81 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 199 AY701528_00019 - 181 1.6e-09 37.3 0.1 1 1 7.6e-12 3.3e-09 36.3 0.1 18 161 6 139 2 174 0.80 Zeta toxin AAA_28 PF13521.6 163 AY701528_00019 - 181 7.3e-06 26.3 0.3 1 2 7.3e-08 3.1e-05 24.3 0.0 2 65 7 74 6 85 0.72 AAA domain AAA_28 PF13521.6 163 AY701528_00019 - 181 7.3e-06 26.3 0.3 2 2 2 8.5e+02 0.1 0.1 70 88 139 160 88 178 0.45 AAA domain AAA PF00004.29 132 AY701528_00019 - 181 1.1e-05 25.9 0.0 1 2 9.7e-08 4.1e-05 24.0 0.0 1 25 7 31 7 83 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 AY701528_00019 - 181 1.1e-05 25.9 0.0 2 2 3 1.3e+03 -0.2 0.0 109 131 113 135 96 172 0.72 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 137 AY701528_00019 - 181 1.8e-05 25.0 0.0 1 2 1.8e-07 7.5e-05 23.0 0.0 4 43 3 42 1 87 0.83 AAA domain AAA_22 PF13401.6 137 AY701528_00019 - 181 1.8e-05 25.0 0.0 2 2 2.3 9.9e+02 -0.0 0.0 62 85 121 143 91 180 0.53 AAA domain AAA_17 PF13207.6 136 AY701528_00019 - 181 5.3e-05 23.7 0.1 1 1 5e-07 0.00021 21.7 0.1 1 128 10 131 10 139 0.75 AAA domain AAA_16 PF13191.6 170 AY701528_00019 - 181 0.00029 21.3 0.0 1 1 8.1e-07 0.00035 21.0 0.0 22 62 2 43 1 147 0.78 AAA ATPase domain DUF2075 PF09848.9 363 AY701528_00019 - 181 0.0011 18.3 0.2 1 1 3.1e-06 0.0013 18.0 0.2 2 27 5 32 4 132 0.90 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 131 AY701528_00019 - 181 0.0014 18.7 0.0 1 1 5.2e-06 0.0022 18.0 0.0 2 123 4 137 3 145 0.59 AAA domain AAA_19 PF13245.6 146 AY701528_00019 - 181 0.0015 18.9 0.2 1 2 7.5e-06 0.0032 17.8 0.0 9 39 3 33 1 51 0.84 AAA domain AAA_19 PF13245.6 146 AY701528_00019 - 181 0.0015 18.9 0.2 2 2 9.4 4e+03 -2.0 0.0 116 116 131 131 97 172 0.60 AAA domain KTI12 PF08433.10 272 AY701528_00019 - 181 0.0018 17.8 0.1 1 2 1e-05 0.0044 16.5 0.0 3 42 6 44 5 87 0.77 Chromatin associated protein KTI12 KTI12 PF08433.10 272 AY701528_00019 - 181 0.0018 17.8 0.1 2 2 3.1 1.3e+03 -1.5 0.0 65 65 129 129 98 174 0.60 Chromatin associated protein KTI12 AAA_30 PF13604.6 192 AY701528_00019 - 181 0.0021 17.8 0.1 1 1 9.1e-06 0.0039 16.9 0.1 17 40 3 26 1 39 0.84 AAA domain ABC_tran PF00005.27 137 AY701528_00019 - 181 0.0043 17.6 0.0 1 1 1.1e-05 0.0046 17.5 0.0 9 51 2 43 1 172 0.81 ABC transporter TIP49 PF06068.13 351 AY701528_00019 - 181 0.0046 16.2 0.3 1 2 3.6e-05 0.015 14.5 0.0 50 75 4 29 1 46 0.81 TIP49 P-loop domain TIP49 PF06068.13 351 AY701528_00019 - 181 0.0046 16.2 0.3 2 2 1.4 5.9e+02 -0.6 0.2 141 178 119 156 102 172 0.73 TIP49 P-loop domain T2SSE PF00437.20 273 AY701528_00019 - 181 0.0056 15.8 0.0 1 1 2e-05 0.0086 15.2 0.0 130 154 5 29 1 70 0.87 Type II/IV secretion system protein AAA_24 PF13479.6 197 AY701528_00019 - 181 0.0071 16.1 0.1 1 1 1.9e-05 0.0082 15.9 0.1 4 32 6 39 3 159 0.81 AAA domain ATPase PF06745.13 231 AY701528_00019 - 181 0.0082 15.5 0.7 1 2 4.1e-05 0.018 14.4 0.1 18 38 3 23 1 39 0.87 KaiC ATPase PF06745.13 231 AY701528_00019 - 181 0.0082 15.5 0.7 2 2 2.3 1e+03 -1.1 0.1 99 129 128 159 98 175 0.51 KaiC APS_kinase PF01583.20 158 AY701528_00019 - 181 0.0099 15.8 0.0 1 2 0.00017 0.073 13.0 0.0 1 47 3 47 3 110 0.67 Adenylylsulphate kinase APS_kinase PF01583.20 158 AY701528_00019 - 181 0.0099 15.8 0.0 2 2 0.82 3.5e+02 1.0 0.0 44 74 118 148 97 158 0.73 Adenylylsulphate kinase AAA_25 PF13481.6 194 AY701528_00019 - 181 0.013 15.1 0.1 1 2 7.9e-05 0.034 13.7 0.1 32 54 3 25 1 28 0.88 AAA domain AAA_25 PF13481.6 194 AY701528_00019 - 181 0.013 15.1 0.1 2 2 7 3e+03 -2.4 0.0 118 174 56 74 30 85 0.48 AAA domain NTPase_1 PF03266.15 168 AY701528_00019 - 181 0.014 15.3 1.2 1 2 6.4e-05 0.027 14.4 0.2 2 22 7 27 6 36 0.88 NTPase NTPase_1 PF03266.15 168 AY701528_00019 - 181 0.014 15.3 1.2 2 2 3.5 1.5e+03 -1.0 0.0 26 82 102 158 96 173 0.59 NTPase DnaB_C PF03796.15 255 AY701528_00019 - 181 0.017 14.5 0.7 1 2 0.00013 0.055 12.8 0.0 17 47 2 32 1 41 0.84 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 AY701528_00019 - 181 0.017 14.5 0.7 2 2 1.1 4.8e+02 -0.1 0.2 48 116 103 172 96 180 0.46 DnaB-like helicase C terminal domain SRP54 PF00448.22 196 AY701528_00019 - 181 0.017 14.7 0.0 1 1 8.7e-05 0.037 13.7 0.0 3 40 6 42 4 46 0.81 SRP54-type protein, GTPase domain RuvB_N PF05496.12 159 AY701528_00019 - 181 0.023 14.5 0.0 1 2 0.00016 0.066 12.9 0.0 36 59 7 30 3 46 0.86 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 AY701528_00019 - 181 0.023 14.5 0.0 2 2 7.7 3.3e+03 -2.3 0.0 108 127 101 120 98 134 0.59 Holliday junction DNA helicase RuvB P-loop domain AAA_11 PF13086.6 261 AY701528_00019 - 181 0.024 14.4 1.4 1 1 0.00016 0.066 13.0 1.4 16 42 3 29 1 179 0.78 AAA domain Hydin_ADK PF17213.3 198 AY701528_00019 - 181 0.025 14.9 0.2 1 2 5.7e-05 0.025 14.9 0.2 2 22 7 27 6 31 0.93 Hydin Adenylate kinase-like domain Hydin_ADK PF17213.3 198 AY701528_00019 - 181 0.025 14.9 0.2 2 2 5.9 2.5e+03 -1.5 0.1 82 82 138 138 101 178 0.43 Hydin Adenylate kinase-like domain AAA_7 PF12775.7 181 AY701528_00019 - 181 0.025 14.1 0.6 1 2 0.00023 0.1 12.1 0.0 31 64 2 35 1 47 0.83 P-loop containing dynein motor region AAA_7 PF12775.7 181 AY701528_00019 - 181 0.025 14.1 0.6 2 2 1.4 6e+02 -0.2 0.1 56 91 98 133 95 169 0.82 P-loop containing dynein motor region Viral_helicase1 PF01443.18 234 AY701528_00019 - 181 0.027 14.2 0.0 1 1 0.0001 0.044 13.5 0.0 1 60 7 75 7 88 0.65 Viral (Superfamily 1) RNA helicase ArsA_ATPase PF02374.15 305 AY701528_00019 - 181 0.035 13.3 0.1 1 2 0.00021 0.088 12.0 0.0 2 44 5 46 4 84 0.80 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 AY701528_00019 - 181 0.035 13.3 0.1 2 2 2.4 1e+03 -1.4 0.1 161 172 136 147 98 175 0.49 Anion-transporting ATPase NACHT PF05729.12 166 AY701528_00019 - 181 0.035 14.0 0.0 1 1 0.00013 0.056 13.4 0.0 1 31 5 35 5 73 0.75 NACHT domain Sigma54_activat PF00158.26 168 AY701528_00019 - 181 0.041 13.6 0.0 1 1 0.00018 0.077 12.7 0.0 25 67 7 56 1 95 0.75 Sigma-54 interaction domain Rad17 PF03215.15 186 AY701528_00019 - 181 0.043 13.7 0.0 1 2 0.0003 0.13 12.2 0.0 45 69 4 28 1 41 0.87 Rad17 P-loop domain Rad17 PF03215.15 186 AY701528_00019 - 181 0.043 13.7 0.0 2 2 4 1.7e+03 -1.3 0.0 113 146 110 145 97 169 0.63 Rad17 P-loop domain MKT1_N PF12247.8 90 AY701528_00019 - 181 0.044 14.2 0.0 1 1 0.00023 0.099 13.0 0.0 14 52 39 75 35 148 0.89 Temperature dependent protein affecting M2 dsRNA replication NB-ARC PF00931.22 252 AY701528_00019 - 181 0.047 12.9 0.0 1 1 0.0002 0.087 12.0 0.0 21 47 5 30 1 45 0.84 NB-ARC domain ATPase_2 PF01637.18 233 AY701528_00019 - 181 0.059 13.3 0.1 1 2 0.0089 3.8 7.4 0.0 19 54 3 38 1 65 0.80 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 AY701528_00019 - 181 0.059 13.3 0.1 2 2 0.082 35 4.2 0.1 47 83 101 146 91 179 0.49 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 107 AY701528_00019 - 181 0.067 13.6 0.0 1 1 0.00028 0.12 12.8 0.0 1 35 7 42 7 77 0.71 RNA helicase PG_binding_3 PF09374.10 76 AY701528_00019 - 181 0.071 13.4 0.1 1 2 0.75 3.2e+02 1.7 0.0 26 63 17 57 11 78 0.69 Predicted Peptidoglycan domain PG_binding_3 PF09374.10 76 AY701528_00019 - 181 0.071 13.4 0.1 2 2 0.0026 1.1 9.5 0.0 13 39 78 104 69 138 0.73 Predicted Peptidoglycan domain IPT PF01745.16 233 AY701528_00019 - 181 0.077 12.4 0.2 1 2 0.00058 0.25 10.7 0.1 3 25 6 28 4 41 0.90 Isopentenyl transferase IPT PF01745.16 233 AY701528_00019 - 181 0.077 12.4 0.2 2 2 1.9 8.3e+02 -0.8 0.0 193 214 126 147 83 164 0.72 Isopentenyl transferase PhoH PF02562.16 205 AY701528_00019 - 181 0.086 12.3 0.1 1 1 0.00038 0.16 11.4 0.1 18 43 3 28 1 36 0.81 PhoH-like protein IstB_IS21 PF01695.17 178 AY701528_00019 - 181 0.088 12.5 0.0 1 1 0.00041 0.18 11.6 0.0 48 70 5 27 1 47 0.84 IstB-like ATP binding protein ATP-synt_ab PF00006.25 213 AY701528_00019 - 181 0.094 12.4 0.0 1 1 0.00025 0.1 12.2 0.0 13 49 3 99 1 176 0.70 ATP synthase alpha/beta family, nucleotide-binding domain APH PF01636.23 240 AY701528_00020 - 305 8.7e-24 84.8 0.0 1 1 3.6e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 AY701528_00020 - 305 2.9e-06 26.7 0.1 1 1 2.8e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 AY701528_00020 - 305 0.00018 21.2 0.0 1 1 7.5e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 AY701528_00020 - 305 0.014 14.8 0.0 1 1 5.5e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 AY701528_00020 - 305 0.044 13.4 0.4 1 1 2e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family Peptidase_C15 PF01470.17 202 AY701528_00021 - 139 4.2e-51 174.0 0.1 1 1 2.7e-55 4.8e-51 173.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase Adenyl_transf PF04439.12 279 AY701528_00022 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 AY701528_00023 - 180 5.6e-20 71.7 0.1 1 1 3.8e-23 7.6e-20 71.3 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 AY701528_00023 - 180 1.7e-13 50.8 0.1 1 1 1.4e-16 2.7e-13 50.1 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 AY701528_00023 - 180 2.7e-12 46.7 0.0 1 1 1.9e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 AY701528_00023 - 180 2e-09 37.8 1.3 1 1 1.2e-12 2.4e-09 37.5 1.3 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 AY701528_00023 - 180 0.0015 19.2 0.0 1 1 9.5e-07 0.0019 18.9 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 AY701528_00023 - 180 0.0019 18.3 0.0 1 1 1.9e-06 0.0038 17.3 0.0 8 58 80 130 50 132 0.86 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 AY701528_00023 - 180 0.011 15.8 0.0 1 1 2.2e-05 0.044 13.9 0.0 21 126 50 154 43 156 0.73 Acetyltransferase (GNAT) domain PanZ PF12568.8 128 AY701528_00023 - 180 0.031 14.0 0.0 1 1 2.2e-05 0.044 13.5 0.0 29 121 63 154 46 163 0.72 Acetyltransferase (GNAT) domain, PanZ FR47 PF08445.10 86 AY701528_00023 - 180 0.038 14.0 0.0 1 1 3.2e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein APH PF01636.23 240 AY701528_00024 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 AY701528_00024 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 AY701528_00024 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 AY701528_00024 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family Y1_Tnp PF01797.16 121 AY701528_00025 - 157 1.5e-37 128.4 1.5 1 1 1.1e-41 2e-37 128.0 1.5 2 121 13 133 12 133 0.94 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 69 AY701528_00026 - 412 4.6e-23 80.9 0.3 1 1 3.8e-26 9.6e-23 79.9 0.3 1 69 321 390 321 390 0.98 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 AY701528_00026 - 412 6.7e-13 48.9 2.3 1 2 1.2 3.1e+03 -1.7 0.8 52 87 37 69 23 95 0.68 Probable transposase OrfB_IS605 PF01385.19 120 AY701528_00026 - 412 6.7e-13 48.9 2.3 2 2 2.6e-16 6.7e-13 48.9 2.3 10 118 184 299 169 301 0.83 Probable transposase HTH_OrfB_IS605 PF12323.8 47 AY701528_00026 - 412 3.3e-09 36.1 2.5 1 1 2.8e-12 7.3e-09 35.0 2.5 1 43 1 44 1 48 0.94 Helix-turn-helix domain DUF4428 PF14471.6 51 AY701528_00026 - 412 0.012 15.6 0.4 1 1 1.8e-05 0.045 13.7 0.4 8 33 353 381 351 391 0.82 Domain of unknown function (DUF4428) Prok-RING_1 PF14446.6 54 AY701528_00026 - 412 0.018 15.0 0.5 1 1 1.3e-05 0.032 14.1 0.5 2 33 346 380 345 384 0.81 Prokaryotic RING finger family 1 Methyltr_RsmF_N PF17125.5 90 AY701528_00026 - 412 0.051 14.1 2.4 1 2 3.8e-05 0.098 13.2 0.1 7 78 64 135 60 138 0.78 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltr_RsmF_N PF17125.5 90 AY701528_00026 - 412 0.051 14.1 2.4 2 2 0.68 1.7e+03 -0.5 0.2 11 40 215 246 208 265 0.65 N-terminal domain of 16S rRNA methyltransferase RsmF Rpr2 PF04032.16 90 AY701528_00026 - 412 0.064 13.5 4.2 1 3 1.7 4.3e+03 -1.9 0.1 13 34 269 290 258 316 0.57 RNAse P Rpr2/Rpp21/SNM1 subunit domain Rpr2 PF04032.16 90 AY701528_00026 - 412 0.064 13.5 4.2 2 3 0.0026 6.7 7.1 0.2 37 54 340 357 326 360 0.87 RNAse P Rpr2/Rpp21/SNM1 subunit domain Rpr2 PF04032.16 90 AY701528_00026 - 412 0.064 13.5 4.2 3 3 0.0041 11 6.4 0.1 42 67 366 389 357 397 0.79 RNAse P Rpr2/Rpp21/SNM1 subunit domain NPA PF16469.5 123 AY701528_00027 - 91 0.057 14.0 6.1 1 1 3.3e-06 0.06 13.9 6.1 17 103 3 89 1 91 0.87 Nematode polyprotein allergen ABA-1 DUF1272 PF06906.11 57 AY701528_00028 - 75 0.0094 16.0 4.2 1 1 1.8e-06 0.016 15.3 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) Papo_T_antigen PF02380.15 93 AY701528_00028 - 75 0.011 15.8 6.4 1 1 1.9e-06 0.017 15.2 6.4 51 73 44 65 28 69 0.86 T-antigen specific domain AAA_31 PF13614.6 177 AY701528_00029 - 31 7.9e-05 22.7 0.1 1 1 1.3e-08 7.9e-05 22.7 0.1 3 24 2 23 1 30 0.92 AAA domain CbiA PF01656.23 128 AY701528_00029 - 31 0.0032 17.5 0.0 1 1 5.6e-07 0.0033 17.5 0.0 1 21 3 23 3 26 0.92 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 246 AY701528_00029 - 31 0.037 13.5 0.1 1 1 6.4e-06 0.038 13.4 0.1 5 25 2 22 1 25 0.91 NUBPL iron-transfer P-loop NTPase Cas_DxTHG PF09455.10 359 AY701528_00030 - 153 0.045 13.3 3.0 1 2 0.056 3.3e+02 0.6 0.1 81 121 29 74 5 79 0.60 CRISPR-associated (Cas) DxTHG family Cas_DxTHG PF09455.10 359 AY701528_00030 - 153 0.045 13.3 3.0 2 2 1.3e-05 0.075 12.6 1.7 34 101 80 151 52 153 0.72 CRISPR-associated (Cas) DxTHG family adh_short PF00106.25 195 AY701528_00030 - 153 0.071 12.6 0.0 1 1 1.4e-05 0.084 12.3 0.0 17 81 57 124 49 151 0.88 short chain dehydrogenase Mur_ligase_C PF02875.21 91 AY701528_00030 - 153 0.078 13.2 0.0 1 1 2.2e-05 0.13 12.5 0.0 21 78 72 126 58 135 0.81 Mur ligase family, glutamate ligase domain Eco57I PF07669.11 106 AY701528_00032 - 556 1.9e-05 25.1 0.2 1 1 6.6e-09 5.9e-05 23.5 0.2 3 103 372 472 370 475 0.78 Eco57I restriction-modification methylase MTS PF05175.14 169 AY701528_00032 - 556 0.0027 17.3 0.0 1 1 7.7e-07 0.0069 16.0 0.0 31 144 309 427 299 442 0.72 Methyltransferase small domain DUF2362 PF10154.9 501 AY730723_00001 - 369 0.00027 20.0 30.9 1 2 2 1.8e+04 -8.8 16.2 105 234 2 133 1 139 0.48 Uncharacterized conserved protein (DUF2362) DUF2362 PF10154.9 501 AY730723_00001 - 369 0.00027 20.0 30.9 2 2 3e-08 0.00027 20.0 30.9 22 221 139 361 136 368 0.77 Uncharacterized conserved protein (DUF2362) ORC4_C PF14629.6 219 AY730723_00001 - 369 0.0033 16.8 1.8 1 3 0.39 3.5e+03 -2.9 0.7 23 49 13 42 2 67 0.57 Origin recognition complex (ORC) subunit 4 C-terminus ORC4_C PF14629.6 219 AY730723_00001 - 369 0.0033 16.8 1.8 2 3 0.32 2.9e+03 -2.6 0.0 44 130 83 102 69 113 0.62 Origin recognition complex (ORC) subunit 4 C-terminus ORC4_C PF14629.6 219 AY730723_00001 - 369 0.0033 16.8 1.8 3 3 3.7e-07 0.0033 16.8 1.8 22 62 187 238 160 276 0.81 Origin recognition complex (ORC) subunit 4 C-terminus MAF_flag10 PF01973.18 171 CM007884_00001 - 430 1.3e-43 148.6 1.0 1 1 4.5e-47 2.7e-43 147.6 1.0 11 170 3 167 1 168 0.92 Protein of unknown function DUF115 KASH_CCD PF14662.6 191 CM007884_00001 - 430 0.0075 16.1 0.5 1 1 6.2e-06 0.037 13.9 0.5 12 81 270 339 267 347 0.91 Coiled-coil region of CCDC155 or KASH Fib_alpha PF08702.10 143 CM007884_00001 - 430 0.072 13.3 4.3 1 2 0.075 4.5e+02 1.0 0.0 84 132 212 232 174 236 0.66 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CM007884_00001 - 430 0.072 13.3 4.3 2 2 5.4e-05 0.33 11.2 2.8 26 120 271 364 269 376 0.88 Fibrinogen alpha/beta chain family MAF_flag10 PF01973.18 171 CM007884_00002 - 626 1.5e-42 145.2 1.3 1 2 0.43 2.6e+03 -2.0 0.2 83 110 122 148 92 186 0.63 Protein of unknown function DUF115 MAF_flag10 PF01973.18 171 CM007884_00002 - 626 1.5e-42 145.2 1.3 2 2 4.8e-46 2.9e-42 144.3 0.1 1 170 209 384 209 385 0.91 Protein of unknown function DUF115 PspA_IM30 PF04012.12 221 CM007884_00002 - 626 0.054 13.1 2.0 1 1 1.4e-05 0.084 12.4 2.0 82 138 486 543 467 551 0.86 PspA/IM30 family FliE PF02049.18 89 CM007884_00002 - 626 0.086 13.0 0.1 1 1 2.7e-05 0.16 12.1 0.1 24 84 490 550 472 555 0.86 Flagellar hook-basal body complex protein FliE Mur_ligase_M PF08245.12 192 CM007885_00002 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 CM007885_00002 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 CM007885_00002 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain Abhydrolase_1 PF00561.20 257 CM007885_00003 - 239 5.1e-09 36.2 0.0 1 2 1.3e-08 3.3e-05 23.7 0.0 3 95 28 112 26 120 0.87 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 257 CM007885_00003 - 239 5.1e-09 36.2 0.0 2 2 0.00011 0.27 10.8 0.0 207 254 180 226 119 228 0.78 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 220 CM007885_00003 - 239 6.4e-07 30.2 0.0 1 1 9.3e-10 2.4e-06 28.3 0.0 1 97 28 121 28 234 0.65 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 239 CM007885_00003 - 239 2.5e-05 23.7 0.0 1 1 1.5e-08 3.9e-05 23.0 0.0 7 116 28 126 25 164 0.74 Serine aminopeptidase, S33 FSH1 PF03959.13 212 CM007885_00003 - 239 0.0031 17.2 0.1 1 2 0.016 42 3.7 0.0 5 26 26 47 23 61 0.81 Serine hydrolase (FSH1) FSH1 PF03959.13 212 CM007885_00003 - 239 0.0031 17.2 0.1 2 2 0.0001 0.26 10.9 0.0 151 201 176 223 85 225 0.74 Serine hydrolase (FSH1) Lipase_3 PF01764.25 142 CM007885_00003 - 239 0.018 14.9 0.0 1 2 2e-05 0.051 13.5 0.0 44 83 57 108 17 113 0.74 Lipase (class 3) Lipase_3 PF01764.25 142 CM007885_00003 - 239 0.018 14.9 0.0 2 2 1 2.7e+03 -1.9 0.0 46 71 167 192 141 194 0.65 Lipase (class 3) Abhydrolase_4 PF08386.10 103 CM007885_00003 - 239 0.053 13.6 0.0 1 1 3.2e-05 0.083 13.0 0.0 32 65 182 215 169 238 0.78 TAP-like protein Rota_VP2 PF05087.12 884 CM007885_00003 - 239 0.056 11.6 0.0 1 1 2.7e-05 0.069 11.3 0.0 724 781 52 109 43 136 0.81 Rotavirus VP2 protein PhdYeFM_antitox PF02604.19 75 CM007885_00004 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system Dala_Dala_lig_C PF07478.13 204 CM007885_00005 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 CM007885_00005 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 CM007885_00005 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 CM007885_00005 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 CM007885_00005 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 CM007885_00005 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 CM007885_00005 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 CM007885_00005 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 CM007885_00005 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain HHH_5 PF14520.6 57 CM007885_00006 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 CM007885_00006 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 CM007885_00006 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 CM007885_00006 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 CM007885_00006 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 CM007885_00006 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 CM007885_00006 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 CM007885_00006 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 CM007885_00006 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 CM007885_00006 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 CM007885_00006 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 CM007885_00006 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 CM007885_00006 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CM007885_00006 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 CM007885_00006 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 CM007885_00006 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 CM007885_00006 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 CM007885_00006 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 CM007885_00006 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 CM007885_00006 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 CM007885_00006 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 CM007885_00006 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda FapA PF03961.13 454 CM007885_00007 - 619 3.5e-30 105.0 37.0 1 1 5.8e-34 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 CM007885_00007 - 619 0.027 13.8 8.1 1 1 6.8e-06 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein MurJ PF03023.14 452 CM007885_00008 - 483 1e-91 307.8 60.1 1 1 9.5e-96 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ tRNA-synt_1e PF01406.19 301 CM007885_00009 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 CM007885_00009 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 CM007885_00009 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 CM007885_00009 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 CM007885_00009 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 CM007885_00009 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 CM007885_00009 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 CM007885_00009 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 CM007885_00009 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 CM007885_00009 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 CM007885_00009 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 CM007885_00009 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) ABC_membrane PF00664.23 274 CM007885_00010 - 580 4.4e-48 164.3 8.4 1 1 3.2e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 CM007885_00010 - 580 4.9e-31 108.1 0.1 1 1 5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 CM007885_00010 - 580 6e-10 38.9 5.9 1 1 7.7e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 CM007885_00010 - 580 0.00081 19.3 0.2 1 2 4.1 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 CM007885_00010 - 580 0.00081 19.3 0.2 2 2 1.1e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 CM007885_00010 - 580 0.0025 18.1 0.4 1 1 1.5e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 CM007885_00010 - 580 0.0056 16.9 0.2 1 1 2.6e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 CM007885_00010 - 580 0.0098 15.6 0.1 1 1 2.3e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 CM007885_00010 - 580 0.024 15.0 0.3 1 3 0.91 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 CM007885_00010 - 580 0.024 15.0 0.3 2 3 1.3e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 CM007885_00010 - 580 0.024 15.0 0.3 3 3 0.83 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 CM007885_00010 - 580 0.035 14.5 0.0 1 1 5.2e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 CM007885_00010 - 580 0.094 12.5 0.7 1 2 4.1 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 CM007885_00010 - 580 0.094 12.5 0.7 2 2 0.00011 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain DHO_dh PF01180.21 295 CM007885_00011 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 CM007885_00011 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 CM007885_00011 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 CM007885_00011 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 CM007885_00011 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family Peptidase_M16_C PF05193.21 183 CM007885_00012 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 CM007885_00012 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 CM007885_00012 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 CM007885_00012 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 CM007885_00012 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 CM007885_00012 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHDPS PF00701.22 289 CM007885_00013 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 CM007885_00013 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 CM007885_00013 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 adh_short_C2 PF13561.6 234 CM007885_00014 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 CM007885_00014 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 CM007885_00014 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 CM007885_00014 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 CM007885_00014 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif Lactamase_B PF00753.27 197 CM007885_00016 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 CM007885_00016 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain NAD_synthase PF02540.17 242 CM007885_00017 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 CM007885_00017 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 CM007885_00017 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 CM007885_00017 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 CM007885_00017 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 CM007885_00017 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 CM007885_00017 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 CM007885_00017 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 CM007885_00017 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family LpxK PF02606.14 327 CM007885_00018 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 CM007885_00018 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 CM007885_00018 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CM007885_00018 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) PALP PF00291.25 294 CM007885_00019 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 CM007885_00019 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 CM007885_00019 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 CM007885_00019 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 CM007885_00019 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 CM007885_00019 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain CTP_transf_3 PF02348.19 221 CM007885_00020 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 CM007885_00020 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 CM007885_00020 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 CM007885_00020 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 CM007885_00020 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain Mur_ligase_M PF08245.12 192 CM007886_00002 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 CM007886_00002 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 CM007886_00002 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain Abhydrolase_1 PF00561.20 257 CM007886_00003 - 239 5.1e-09 36.2 0.0 1 2 1.3e-08 3.3e-05 23.7 0.0 3 95 28 112 26 120 0.87 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 257 CM007886_00003 - 239 5.1e-09 36.2 0.0 2 2 0.00011 0.27 10.8 0.0 207 254 180 226 119 228 0.78 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 220 CM007886_00003 - 239 6.4e-07 30.2 0.0 1 1 9.3e-10 2.4e-06 28.3 0.0 1 97 28 121 28 234 0.65 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 239 CM007886_00003 - 239 2.5e-05 23.7 0.0 1 1 1.5e-08 3.9e-05 23.0 0.0 7 116 28 126 25 164 0.74 Serine aminopeptidase, S33 FSH1 PF03959.13 212 CM007886_00003 - 239 0.0031 17.2 0.1 1 2 0.016 42 3.7 0.0 5 26 26 47 23 61 0.81 Serine hydrolase (FSH1) FSH1 PF03959.13 212 CM007886_00003 - 239 0.0031 17.2 0.1 2 2 0.0001 0.26 10.9 0.0 151 201 176 223 85 225 0.74 Serine hydrolase (FSH1) Lipase_3 PF01764.25 142 CM007886_00003 - 239 0.018 14.9 0.0 1 2 2e-05 0.051 13.5 0.0 44 83 57 108 17 113 0.74 Lipase (class 3) Lipase_3 PF01764.25 142 CM007886_00003 - 239 0.018 14.9 0.0 2 2 1 2.7e+03 -1.9 0.0 46 71 167 192 141 194 0.65 Lipase (class 3) Abhydrolase_4 PF08386.10 103 CM007886_00003 - 239 0.053 13.6 0.0 1 1 3.2e-05 0.083 13.0 0.0 32 65 182 215 169 238 0.78 TAP-like protein Rota_VP2 PF05087.12 884 CM007886_00003 - 239 0.056 11.6 0.0 1 1 2.7e-05 0.069 11.3 0.0 724 781 52 109 43 136 0.81 Rotavirus VP2 protein PhdYeFM_antitox PF02604.19 75 CM007886_00004 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system Dala_Dala_lig_C PF07478.13 204 CM007886_00005 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 CM007886_00005 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 CM007886_00005 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 CM007886_00005 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 CM007886_00005 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 CM007886_00005 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 CM007886_00005 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 CM007886_00005 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 CM007886_00005 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain HHH_5 PF14520.6 57 CM007886_00006 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 CM007886_00006 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 CM007886_00006 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 CM007886_00006 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 CM007886_00006 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 CM007886_00006 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 CM007886_00006 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 CM007886_00006 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 CM007886_00006 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 CM007886_00006 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 CM007886_00006 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 CM007886_00006 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 CM007886_00006 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CM007886_00006 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 CM007886_00006 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 CM007886_00006 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 CM007886_00006 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 CM007886_00006 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 CM007886_00006 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 CM007886_00006 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 CM007886_00006 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 CM007886_00006 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda FapA PF03961.13 454 CM007886_00007 - 619 3.5e-30 105.0 37.0 1 1 5.8e-34 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 CM007886_00007 - 619 0.027 13.8 8.1 1 1 6.8e-06 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein MurJ PF03023.14 452 CM007886_00008 - 483 1e-91 307.8 60.1 1 1 9.5e-96 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ tRNA-synt_1e PF01406.19 301 CM007886_00009 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 CM007886_00009 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 CM007886_00009 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 CM007886_00009 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 CM007886_00009 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 CM007886_00009 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 CM007886_00009 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 CM007886_00009 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 CM007886_00009 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 CM007886_00009 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 CM007886_00009 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 CM007886_00009 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) ABC_membrane PF00664.23 274 CM007886_00010 - 580 4.4e-48 164.3 8.4 1 1 3.2e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 CM007886_00010 - 580 4.9e-31 108.1 0.1 1 1 5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 CM007886_00010 - 580 6e-10 38.9 5.9 1 1 7.7e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 CM007886_00010 - 580 0.00081 19.3 0.2 1 2 4.1 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 CM007886_00010 - 580 0.00081 19.3 0.2 2 2 1.1e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 CM007886_00010 - 580 0.0025 18.1 0.4 1 1 1.5e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 CM007886_00010 - 580 0.0056 16.9 0.2 1 1 2.6e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 CM007886_00010 - 580 0.0098 15.6 0.1 1 1 2.3e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 CM007886_00010 - 580 0.024 15.0 0.3 1 3 0.91 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 CM007886_00010 - 580 0.024 15.0 0.3 2 3 1.3e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 CM007886_00010 - 580 0.024 15.0 0.3 3 3 0.83 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 CM007886_00010 - 580 0.035 14.5 0.0 1 1 5.2e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 CM007886_00010 - 580 0.094 12.5 0.7 1 2 4.1 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 CM007886_00010 - 580 0.094 12.5 0.7 2 2 0.00011 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain DHO_dh PF01180.21 295 CM007886_00011 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 CM007886_00011 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 CM007886_00011 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 CM007886_00011 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 CM007886_00011 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family Peptidase_M16_C PF05193.21 183 CM007886_00012 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 CM007886_00012 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 CM007886_00012 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 CM007886_00012 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 CM007886_00012 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 CM007886_00012 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHDPS PF00701.22 289 CM007886_00013 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 CM007886_00013 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 CM007886_00013 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 adh_short_C2 PF13561.6 234 CM007886_00014 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 CM007886_00014 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 CM007886_00014 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 CM007886_00014 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 CM007886_00014 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif Lactamase_B PF00753.27 197 CM007886_00016 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 CM007886_00016 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain NAD_synthase PF02540.17 242 CM007886_00017 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 CM007886_00017 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 CM007886_00017 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 CM007886_00017 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 CM007886_00017 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 CM007886_00017 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 CM007886_00017 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 CM007886_00017 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 CM007886_00017 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family LpxK PF02606.14 327 CM007886_00018 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 CM007886_00018 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 CM007886_00018 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CM007886_00018 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) PALP PF00291.25 294 CM007886_00019 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 CM007886_00019 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 CM007886_00019 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 CM007886_00019 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 CM007886_00019 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 CM007886_00019 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain CTP_transf_3 PF02348.19 221 CM007886_00020 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 CM007886_00020 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 CM007886_00020 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 CM007886_00020 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 CM007886_00020 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain MAF_flag10 PF01973.18 171 CM007887_00001 - 462 3.7e-42 143.9 0.7 1 2 6.1e-46 5.4e-42 143.4 0.1 2 170 59 226 58 227 0.91 Protein of unknown function DUF115 MAF_flag10 PF01973.18 171 CM007887_00001 - 462 3.7e-42 143.9 0.7 2 2 0.84 7.5e+03 -3.5 0.0 60 91 359 390 358 395 0.70 Protein of unknown function DUF115 Med15_fungi PF05397.12 112 CM007887_00001 - 462 0.011 16.0 0.7 1 2 0.041 3.7e+02 1.4 0.0 78 108 260 290 243 292 0.83 Mediator complex subunit 15 Med15_fungi PF05397.12 112 CM007887_00001 - 462 0.011 16.0 0.7 2 2 1.6e-05 0.15 12.4 0.2 56 105 339 388 325 394 0.85 Mediator complex subunit 15 Mur_ligase_M PF08245.12 192 CM007888_00001 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 CM007888_00001 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 CM007888_00001 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain CTP_transf_3 PF02348.19 221 CM007888_00003 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 CM007888_00003 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 CM007888_00003 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 CM007888_00003 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 CM007888_00003 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain PALP PF00291.25 294 CM007888_00004 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 CM007888_00004 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 CM007888_00004 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 CM007888_00004 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 CM007888_00004 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 CM007888_00004 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain LpxK PF02606.14 327 CM007888_00005 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 CM007888_00005 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 CM007888_00005 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CM007888_00005 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) NAD_synthase PF02540.17 242 CM007888_00006 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 CM007888_00006 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 CM007888_00006 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 CM007888_00006 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 CM007888_00006 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 CM007888_00006 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 CM007888_00006 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 CM007888_00006 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 CM007888_00006 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family Lactamase_B PF00753.27 197 CM007888_00007 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 CM007888_00007 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain adh_short_C2 PF13561.6 234 CM007888_00009 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 CM007888_00009 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 CM007888_00009 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 CM007888_00009 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 CM007888_00009 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif DHDPS PF00701.22 289 CM007888_00010 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 CM007888_00010 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 CM007888_00010 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 Peptidase_M16_C PF05193.21 183 CM007888_00011 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 CM007888_00011 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 CM007888_00011 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 CM007888_00011 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 CM007888_00011 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 CM007888_00011 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHO_dh PF01180.21 295 CM007888_00012 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 CM007888_00012 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 CM007888_00012 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 CM007888_00012 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 CM007888_00012 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family ABC_membrane PF00664.23 274 CM007888_00013 - 580 4.4e-48 164.3 8.4 1 1 3.2e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 CM007888_00013 - 580 4.9e-31 108.1 0.1 1 1 5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 CM007888_00013 - 580 6e-10 38.9 5.9 1 1 7.7e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 CM007888_00013 - 580 0.00081 19.3 0.2 1 2 4.1 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 CM007888_00013 - 580 0.00081 19.3 0.2 2 2 1.1e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 CM007888_00013 - 580 0.0025 18.1 0.4 1 1 1.5e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 CM007888_00013 - 580 0.0056 16.9 0.2 1 1 2.6e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 CM007888_00013 - 580 0.0098 15.6 0.1 1 1 2.3e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 CM007888_00013 - 580 0.024 15.0 0.3 1 3 0.91 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 CM007888_00013 - 580 0.024 15.0 0.3 2 3 1.3e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 CM007888_00013 - 580 0.024 15.0 0.3 3 3 0.83 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 CM007888_00013 - 580 0.035 14.5 0.0 1 1 5.2e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 CM007888_00013 - 580 0.094 12.5 0.7 1 2 4.1 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 CM007888_00013 - 580 0.094 12.5 0.7 2 2 0.00011 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain tRNA-synt_1e PF01406.19 301 CM007888_00014 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 CM007888_00014 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 CM007888_00014 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 CM007888_00014 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 CM007888_00014 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 CM007888_00014 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 CM007888_00014 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 CM007888_00014 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 CM007888_00014 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 CM007888_00014 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 CM007888_00014 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 CM007888_00014 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) MurJ PF03023.14 452 CM007888_00015 - 483 1e-91 307.8 60.1 1 1 9.5e-96 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ FapA PF03961.13 454 CM007888_00016 - 619 3.5e-30 105.0 37.0 1 1 5.8e-34 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 CM007888_00016 - 619 0.027 13.8 8.1 1 1 6.8e-06 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein HHH_5 PF14520.6 57 CM007888_00017 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 CM007888_00017 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 CM007888_00017 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 CM007888_00017 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 CM007888_00017 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 CM007888_00017 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 CM007888_00017 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 CM007888_00017 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 CM007888_00017 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 CM007888_00017 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 CM007888_00017 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 CM007888_00017 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 CM007888_00017 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CM007888_00017 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 CM007888_00017 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 CM007888_00017 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 CM007888_00017 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 CM007888_00017 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 CM007888_00017 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 CM007888_00017 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 CM007888_00017 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 CM007888_00017 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda Dala_Dala_lig_C PF07478.13 204 CM007888_00018 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 CM007888_00018 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 CM007888_00018 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 CM007888_00018 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 CM007888_00018 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 CM007888_00018 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 CM007888_00018 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 CM007888_00018 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 CM007888_00018 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain PhdYeFM_antitox PF02604.19 75 CM007888_00019 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system TraC_F_IV PF11130.8 238 CP009044_00001 - 830 7.6e-30 104.3 0.0 1 1 5.5e-33 1.4e-29 103.4 0.0 2 237 29 251 28 252 0.92 F pilus assembly Type-IV secretion system for plasmid transfer AAA_10 PF12846.7 362 CP009044_00001 - 830 3.3e-10 39.4 0.0 1 1 6.5e-13 1.7e-09 37.1 0.0 23 292 455 716 450 741 0.78 AAA-like domain TrwB_AAD_bind PF10412.9 386 CP009044_00001 - 830 0.00074 18.5 0.0 1 2 0.00063 1.6 7.5 0.0 19 85 457 522 442 547 0.75 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP009044_00001 - 830 0.00074 18.5 0.0 2 2 0.00031 0.8 8.5 0.0 225 286 645 711 620 740 0.79 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 137 CP009044_00001 - 830 0.0072 16.6 0.1 1 3 0.85 2.2e+03 -1.2 0.0 106 135 74 98 64 100 0.77 AAA domain AAA_22 PF13401.6 137 CP009044_00001 - 830 0.0072 16.6 0.1 2 3 0.014 36 4.6 0.0 9 25 457 473 455 491 0.90 AAA domain AAA_22 PF13401.6 137 CP009044_00001 - 830 0.0072 16.6 0.1 3 3 0.0016 4.1 7.7 0.0 84 128 653 703 644 709 0.72 AAA domain Zot PF05707.12 194 CP009044_00001 - 830 0.012 15.2 0.0 1 1 1e-05 0.026 14.1 0.0 84 131 667 711 652 721 0.86 Zonular occludens toxin (Zot) FH2 PF02181.23 372 CP009044_00001 - 830 0.016 14.4 1.1 1 2 0.0074 19 4.2 0.3 310 368 94 152 73 156 0.93 Formin Homology 2 Domain FH2 PF02181.23 372 CP009044_00001 - 830 0.016 14.4 1.1 2 2 0.0004 1 8.4 0.0 64 113 543 594 518 608 0.86 Formin Homology 2 Domain CbiA PF01656.23 128 CP009044_00001 - 830 0.039 14.0 0.0 1 1 4e-05 0.1 12.7 0.0 7 55 461 561 458 715 0.75 CobQ/CobB/MinD/ParA nucleotide binding domain TrbI_Ftype PF09677.10 106 CP009044_00002 - 122 2.1e-05 24.8 1.3 1 1 1.4e-09 2.5e-05 24.6 1.3 56 100 65 110 6 116 0.87 Type-F conjugative transfer system protein (TrbI_Ftype) Peptidase_S26 PF10502.9 138 CP009044_00003 - 165 2.2e-13 50.2 0.0 1 1 1.9e-17 3.4e-13 49.6 0.0 19 133 55 161 36 164 0.88 Signal peptidase, peptidase S26 TraH PF06122.11 361 CP009044_00004 - 478 5.6e-68 229.8 2.0 1 1 4.4e-72 7.8e-68 229.4 2.0 6 354 32 386 26 393 0.79 Conjugative relaxosome accessory transposon protein TraN PF06986.11 240 CP009044_00006 - 718 4.3e-29 101.9 9.8 1 5 1 1.8e+04 -7.1 9.8 9 87 252 326 245 344 0.66 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 CP009044_00006 - 718 4.3e-29 101.9 9.8 2 5 0.24 4.3e+03 -2.9 0.1 61 76 362 377 350 395 0.81 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 CP009044_00006 - 718 4.3e-29 101.9 9.8 3 5 1 1.8e+04 -5.3 5.4 29 73 407 446 376 485 0.55 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 CP009044_00006 - 718 4.3e-29 101.9 9.8 4 5 0.0013 23 4.6 6.9 42 77 480 517 469 541 0.81 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 CP009044_00006 - 718 4.3e-29 101.9 9.8 5 5 2.4e-33 4.3e-29 101.9 9.8 131 240 550 667 523 667 0.82 Type-1V conjugative transfer system mating pair stabilisation Staphylokinase PF02821.16 126 CP009044_00011 - 121 0.075 13.5 5.2 1 2 0.00014 2.6 8.5 1.5 33 62 10 37 2 46 0.80 Staphylokinase/Streptokinase family Staphylokinase PF02821.16 126 CP009044_00011 - 121 0.075 13.5 5.2 2 2 0.00047 8.4 6.9 0.1 40 77 48 83 44 104 0.82 Staphylokinase/Streptokinase family HTH_19 PF12844.7 65 CP009044_00013 - 123 9.4e-08 32.0 0.6 1 2 1.4e-10 3.6e-07 30.1 0.2 3 60 20 77 19 78 0.97 Helix-turn-helix domain HTH_19 PF12844.7 65 CP009044_00013 - 123 9.4e-08 32.0 0.6 2 2 0.49 1.3e+03 -0.5 0.0 26 35 98 107 80 119 0.68 Helix-turn-helix domain HTH_3 PF01381.22 55 CP009044_00013 - 123 3.1e-06 27.1 0.2 1 1 2.3e-09 5.9e-06 26.2 0.2 1 55 21 76 21 76 0.93 Helix-turn-helix HTH_26 PF13443.6 63 CP009044_00013 - 123 0.0061 17.0 0.0 1 1 3.9e-06 0.0099 16.3 0.0 11 55 30 74 20 79 0.90 Cro/C1-type HTH DNA-binding domain Phage_CI_repr PF07022.13 65 CP009044_00013 - 123 0.012 15.7 0.0 1 1 7.1e-06 0.018 15.1 0.0 11 63 28 82 21 84 0.87 Bacteriophage CI repressor helix-turn-helix domain HTH_25 PF13413.6 62 CP009044_00013 - 123 0.014 15.2 0.0 1 1 1.1e-05 0.028 14.3 0.0 5 42 24 61 20 75 0.84 Helix-turn-helix domain Pup PF05639.11 68 CP009044_00013 - 123 0.02 15.8 0.3 1 1 1.5e-05 0.038 14.9 0.3 18 51 86 119 80 121 0.80 Pup-like protein Nbl1_Borealin_N PF10444.9 57 CP009044_00013 - 123 0.047 13.3 2.8 1 3 0.035 90 2.8 0.1 10 39 13 43 8 46 0.80 Nbl1 / Borealin N terminal Nbl1_Borealin_N PF10444.9 57 CP009044_00013 - 123 0.047 13.3 2.8 2 3 2.2 5.8e+03 -3.0 0.0 28 37 62 71 60 74 0.53 Nbl1 / Borealin N terminal Nbl1_Borealin_N PF10444.9 57 CP009044_00013 - 123 0.047 13.3 2.8 3 3 0.00014 0.37 10.5 0.2 13 38 97 122 86 123 0.89 Nbl1 / Borealin N terminal zf-ACC PF17848.1 26 CP009044_00016 - 81 0.0036 17.3 4.1 1 2 0.0013 2.4 8.3 0.3 2 9 11 18 11 28 0.75 Acetyl-coA carboxylase zinc finger domain zf-ACC PF17848.1 26 CP009044_00016 - 81 0.0036 17.3 4.1 2 2 0.00045 0.8 9.8 0.4 2 12 41 50 41 55 0.76 Acetyl-coA carboxylase zinc finger domain zf-ribbon_3 PF13248.6 26 CP009044_00016 - 81 0.0069 15.8 2.9 1 2 0.001 1.8 8.1 0.2 17 25 11 19 6 19 0.82 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP009044_00016 - 81 0.0069 15.8 2.9 2 2 0.001 1.9 8.0 0.2 3 11 41 49 39 52 0.74 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 43 CP009044_00016 - 81 0.0087 15.6 2.4 1 2 0.00043 0.77 9.3 0.4 2 18 12 28 11 31 0.84 TFIIB zinc-binding TF_Zn_Ribbon PF08271.12 43 CP009044_00016 - 81 0.0087 15.6 2.4 2 2 0.0036 6.4 6.4 0.1 21 28 42 49 37 59 0.78 TFIIB zinc-binding tRNA-synt_1g PF09334.11 391 CP009044_00016 - 81 0.021 13.6 0.7 1 1 1.3e-05 0.024 13.4 0.7 136 175 10 49 2 59 0.87 tRNA synthetases class I (M) zf-ISL3 PF14690.6 47 CP009044_00016 - 81 0.023 15.4 1.2 1 2 0.00014 0.26 12.0 0.1 4 28 12 35 9 38 0.80 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ISL3 PF14690.6 47 CP009044_00016 - 81 0.023 15.4 1.2 2 2 0.12 2.1e+02 2.7 0.1 3 12 41 51 39 69 0.79 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.10 40 CP009044_00016 - 81 0.031 14.4 0.3 1 2 0.0033 5.9 7.1 0.1 21 34 4 18 1 22 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP009044_00016 - 81 0.031 14.4 0.3 2 2 0.01 18 5.5 0.0 7 15 42 50 34 59 0.77 Zinc ribbon domain zinc_ribbon_5 PF13719.6 37 CP009044_00016 - 81 0.032 14.0 1.0 1 3 0.006 11 5.9 0.0 4 11 12 19 10 31 0.85 zinc-ribbon domain zinc_ribbon_5 PF13719.6 37 CP009044_00016 - 81 0.032 14.0 1.0 2 3 0.0036 6.4 6.6 0.0 27 37 42 52 37 52 0.87 zinc-ribbon domain zinc_ribbon_5 PF13719.6 37 CP009044_00016 - 81 0.032 14.0 1.0 3 3 3.1 5.5e+03 -2.8 0.0 13 18 71 76 68 80 0.61 zinc-ribbon domain zf-LITAF-like PF10601.9 70 CP009044_00016 - 81 0.064 13.5 1.4 1 2 0.0081 15 6.0 0.3 54 64 8 18 4 23 0.65 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP009044_00016 - 81 0.064 13.5 1.4 2 2 0.0041 7.3 6.9 0.0 3 26 38 61 36 71 0.83 LITAF-like zinc ribbon domain Elf1 PF05129.13 78 CP009044_00016 - 81 0.09 12.8 2.1 1 2 4.2e-05 0.075 13.1 0.9 20 63 9 58 2 60 0.81 Transcription elongation factor Elf1 like Elf1 PF05129.13 78 CP009044_00016 - 81 0.09 12.8 2.1 2 2 5.4 9.8e+03 -3.3 0.0 21 26 66 71 65 75 0.72 Transcription elongation factor Elf1 like zf-C2H2_4 PF13894.6 24 CP009044_00016 - 81 0.09 13.7 1.8 1 2 0.011 19 6.4 0.2 2 10 12 21 11 26 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP009044_00016 - 81 0.09 13.7 1.8 2 2 0.01 19 6.4 0.1 2 11 42 51 41 58 0.82 C2H2-type zinc finger Phage_integrase PF00589.22 172 CP009044_00017 - 328 4.8e-23 81.8 0.1 1 1 1.5e-26 8.8e-23 80.9 0.1 2 170 138 312 137 313 0.86 Phage integrase family Phage_int_SAM_4 PF13495.6 85 CP009044_00017 - 328 0.0021 18.5 8.6 1 3 7e-05 0.42 11.1 0.3 2 50 16 68 15 84 0.72 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 CP009044_00017 - 328 0.0021 18.5 8.6 2 3 3.4e-05 0.2 12.1 0.7 12 37 86 110 80 170 0.81 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 CP009044_00017 - 328 0.0021 18.5 8.6 3 3 1.5 9e+03 -2.8 0.1 9 21 297 309 293 312 0.79 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 CP009044_00017 - 328 0.0042 17.4 0.3 1 1 3.9e-06 0.023 15.0 0.3 11 79 25 106 17 111 0.80 Phage integrase, N-terminal SAM-like domain DUF1566 PF07603.11 115 CP009044_00018 - 117 0.0015 18.9 0.0 1 1 1.1e-07 0.0019 18.5 0.0 18 115 27 111 8 111 0.79 Protein of unknown function (DUF1566) DUF433 PF04255.14 56 CP009044_00019 - 68 0.047 13.5 0.0 1 1 7.7e-06 0.069 13.0 0.0 24 53 14 43 5 44 0.88 Protein of unknown function (DUF433) Toxin_YhaV PF11663.8 138 CP009044_00019 - 68 0.079 13.0 0.0 1 2 1.9e-05 0.17 11.9 0.0 112 136 9 33 2 35 0.85 Toxin with endonuclease activity, of toxin-antitoxin system Toxin_YhaV PF11663.8 138 CP009044_00019 - 68 0.079 13.0 0.0 2 2 0.33 3e+03 -1.8 0.0 20 23 52 55 38 66 0.42 Toxin with endonuclease activity, of toxin-antitoxin system WGR PF05406.15 80 CP009044_00023 - 82 6.7e-07 29.3 0.3 1 1 4.9e-11 8.8e-07 28.9 0.3 8 76 12 79 4 82 0.84 WGR domain DUF3951 PF13131.6 52 CP009044_00027 - 37 0.048 13.9 0.2 1 1 2.7e-06 0.048 13.8 0.2 1 20 1 20 1 30 0.89 Protein of unknown function (DUF3951) HD_2 PF12917.7 182 CP009044_00029 - 182 0.00032 20.5 0.1 1 1 3.8e-08 0.00069 19.4 0.1 55 98 64 104 47 136 0.74 HD containing hydrolase-like enzyme CDT1 PF08839.11 175 CP009044_00031 - 109 0.089 13.1 0.0 1 1 6.5e-06 0.12 12.7 0.0 118 168 10 60 2 64 0.91 DNA replication factor CDT1 like DUF1351 PF07083.11 210 CP009044_00032 - 350 3.8e-24 85.6 8.0 1 2 2.1e-28 3.8e-24 85.6 8.0 2 180 18 200 17 211 0.91 Protein of unknown function (DUF1351) DUF1351 PF07083.11 210 CP009044_00032 - 350 3.8e-24 85.6 8.0 2 2 0.062 1.1e+03 -0.8 3.6 78 116 222 260 215 293 0.75 Protein of unknown function (DUF1351) LBR_tudor PF09465.10 55 CP009044_00033 - 90 0.036 13.9 0.2 1 1 3.2e-06 0.058 13.2 0.2 21 46 49 74 39 78 0.93 Lamin-B receptor of TUDOR domain zf-B_box PF00643.24 42 CP009044_00034 - 166 0.006 16.7 13.5 1 2 1e-06 0.0062 16.7 7.5 4 37 3 38 1 43 0.85 B-box zinc finger zf-B_box PF00643.24 42 CP009044_00034 - 166 0.006 16.7 13.5 2 2 0.015 89 3.4 0.3 24 30 66 72 57 75 0.63 B-box zinc finger FYVE PF01363.21 68 CP009044_00034 - 166 0.026 14.6 6.7 1 1 1.1e-05 0.067 13.3 6.9 12 66 2 75 1 77 0.82 FYVE zinc finger DUF4428 PF14471.6 51 CP009044_00034 - 166 0.069 13.1 0.1 1 2 0.2 1.2e+03 -0.5 2.8 16 26 9 20 2 37 0.76 Domain of unknown function (DUF4428) DUF4428 PF14471.6 51 CP009044_00034 - 166 0.069 13.1 0.1 2 2 1.2e-05 0.069 13.1 0.1 20 41 65 87 49 92 0.76 Domain of unknown function (DUF4428) zf-ACC PF17848.1 26 CP009044_00037 - 363 0.098 12.8 3.8 1 2 0.00044 8 6.6 0.5 19 26 85 92 83 92 0.86 Acetyl-coA carboxylase zinc finger domain zf-ACC PF17848.1 26 CP009044_00037 - 363 0.098 12.8 3.8 2 2 0.00082 15 5.8 0.2 4 11 107 114 104 115 0.78 Acetyl-coA carboxylase zinc finger domain Toprim_2 PF13155.6 90 CP009044_00039 - 381 1e-14 54.7 0.0 1 2 4.8 1.7e+04 -3.7 0.0 42 55 113 126 98 127 0.62 Toprim-like Toprim_2 PF13155.6 90 CP009044_00039 - 381 1e-14 54.7 0.0 2 2 7.6e-18 2.7e-14 53.3 0.0 1 90 285 370 285 370 0.94 Toprim-like Toprim_3 PF13362.6 95 CP009044_00039 - 381 1.6e-08 34.8 0.0 1 1 8.3e-12 3e-08 33.9 0.0 2 90 284 371 283 374 0.79 Toprim domain zf-CHC2 PF01807.20 98 CP009044_00039 - 381 4.3e-07 29.7 0.3 1 1 2.7e-10 9.7e-07 28.5 0.3 11 91 10 94 2 100 0.79 CHC2 zinc finger Toprim_4 PF13662.6 89 CP009044_00039 - 381 0.0096 16.4 0.0 1 1 6.6e-06 0.024 15.1 0.0 50 84 318 352 284 356 0.83 Toprim domain DUF3854 PF12965.7 130 CP009044_00039 - 381 0.023 14.7 0.2 1 1 8.2e-05 0.29 11.1 0.2 68 125 321 372 276 376 0.89 Domain of unknown function (DUF3854) N6_N4_Mtase PF01555.18 231 CP009044_00040 - 291 2.4e-05 24.2 0.4 1 2 0.00012 1.1 8.9 0.0 197 223 41 67 30 69 0.87 DNA methylase N6_N4_Mtase PF01555.18 231 CP009044_00040 - 291 2.4e-05 24.2 0.4 2 2 4.7e-06 0.042 13.5 0.2 3 116 86 228 84 287 0.64 DNA methylase DpnI_C PF17726.1 70 CP009044_00040 - 291 0.00013 22.0 0.3 1 1 4e-08 0.00036 20.6 0.3 5 53 231 279 228 281 0.78 Dam-replacing HTH domain zf-BED PF02892.15 44 CP009044_00041 - 113 0.042 13.9 0.0 1 1 5.4e-06 0.097 12.7 0.0 6 25 54 73 50 80 0.89 BED zinc finger DUF4258 PF14076.6 63 CP009044_00045 - 77 0.069 13.5 0.3 1 1 4.5e-05 0.81 10.1 0.3 2 60 9 65 9 67 0.65 Domain of unknown function (DUF4258) MPTase-PolyVal PF18818.1 126 CP009044_00046 - 341 8.2e-48 161.6 0.0 1 1 4.1e-51 1.2e-47 161.0 0.0 2 126 160 284 159 284 0.99 Metallopeptidase superfamily domain DUF1738 PF08401.11 128 CP009044_00046 - 341 1.1e-33 116.1 0.1 1 1 6.4e-37 1.9e-33 115.3 0.1 3 128 17 135 15 135 0.91 Domain of unknown function (DUF1738) EpmC PF04315.12 163 CP009044_00046 - 341 0.00047 19.9 0.0 1 1 2.9e-07 0.00087 19.0 0.0 5 53 163 214 159 229 0.83 Elongation factor P hydroxylase Tox-MPTase3 PF15639.6 137 CP009044_00046 - 341 0.0042 16.9 0.1 1 1 3.1e-06 0.0092 15.8 0.1 100 135 202 239 184 240 0.75 Metallopeptidase toxin 3 DUF4127 PF13552.6 490 CP009044_00046 - 341 0.021 13.5 0.1 1 1 9.5e-06 0.028 13.0 0.1 123 242 199 338 189 341 0.85 Protein of unknown function (DUF4127) GP88 PF17338.2 231 CP009044_00046 - 341 0.022 14.2 0.1 1 2 0.92 2.7e+03 -2.5 0.0 61 95 8 40 4 69 0.71 Gene product 88 GP88 PF17338.2 231 CP009044_00046 - 341 0.022 14.2 0.1 2 2 2e-05 0.059 12.8 0.0 103 159 262 319 234 330 0.86 Gene product 88 Fucose_iso_N2 PF07882.12 180 CP009044_00047 - 133 0.0057 16.2 0.8 1 2 0.2 1.2e+03 -1.1 0.0 144 163 16 35 10 44 0.76 L-fucose isomerase, second N-terminal domain Fucose_iso_N2 PF07882.12 180 CP009044_00047 - 133 0.0057 16.2 0.8 2 2 1.7e-06 0.01 15.5 0.3 26 97 47 121 34 129 0.82 L-fucose isomerase, second N-terminal domain RNA_pol_Rpb8 PF03870.15 139 CP009044_00047 - 133 0.056 13.6 0.1 1 1 1.3e-05 0.076 13.2 0.1 31 71 58 98 46 119 0.75 RNA polymerase Rpb8 s48_45 PF07422.13 108 CP009044_00047 - 133 0.082 13.5 0.8 1 2 0.2 1.2e+03 0.1 0.0 33 44 2 13 1 21 0.77 Sexual stage antigen s48/45 domain s48_45 PF07422.13 108 CP009044_00047 - 133 0.082 13.5 0.8 2 2 4.7e-05 0.28 11.8 0.1 25 87 46 118 22 130 0.72 Sexual stage antigen s48/45 domain RecT PF03837.14 199 CP009044_00048 - 281 1.2e-36 126.1 0.3 1 2 2.5e-40 4.5e-36 124.2 0.0 11 192 31 202 23 210 0.91 RecT family RecT PF03837.14 199 CP009044_00048 - 281 1.2e-36 126.1 0.3 2 2 0.037 6.6e+02 -0.4 0.1 109 156 232 278 207 280 0.58 RecT family Cas_Cas4 PF01930.17 162 CP009044_00051 - 359 1.6e-06 28.3 0.2 1 3 3.4 1e+04 -3.6 0.7 109 141 20 52 16 61 0.50 Domain of unknown function DUF83 Cas_Cas4 PF01930.17 162 CP009044_00051 - 359 1.6e-06 28.3 0.2 2 3 5.3e-10 1.6e-06 28.3 0.2 47 160 131 250 79 251 0.77 Domain of unknown function DUF83 Cas_Cas4 PF01930.17 162 CP009044_00051 - 359 1.6e-06 28.3 0.2 3 3 0.99 3e+03 -1.8 0.1 120 145 279 304 256 312 0.62 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 255 CP009044_00051 - 359 8.1e-05 22.7 1.2 1 2 4.4e-08 0.00013 22.0 0.2 101 255 111 251 14 251 0.69 PD-(D/E)XK nuclease superfamily PDDEXK_1 PF12705.7 255 CP009044_00051 - 359 8.1e-05 22.7 1.2 2 2 0.5 1.5e+03 -1.2 0.1 85 114 284 312 258 331 0.45 PD-(D/E)XK nuclease superfamily Nsp1_C PF05064.13 116 CP009044_00051 - 359 0.0026 17.5 0.5 1 2 1.7 5.1e+03 -2.7 0.1 11 26 35 50 24 58 0.54 Nsp1-like C-terminal region Nsp1_C PF05064.13 116 CP009044_00051 - 359 0.0026 17.5 0.5 2 2 8.8e-07 0.0026 17.5 0.5 62 112 253 303 250 308 0.91 Nsp1-like C-terminal region GrpE PF01025.19 166 CP009044_00051 - 359 0.011 15.4 1.7 1 2 0.17 5.1e+02 0.2 0.7 32 70 15 53 11 63 0.75 GrpE GrpE PF01025.19 166 CP009044_00051 - 359 0.011 15.4 1.7 2 2 3.8e-06 0.011 15.4 1.7 12 65 262 315 254 324 0.90 GrpE CENP-F_leu_zip PF10473.9 140 CP009044_00051 - 359 0.035 14.1 9.6 1 2 0.024 73 3.4 0.5 34 59 16 41 12 53 0.74 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CENP-F_leu_zip PF10473.9 140 CP009044_00051 - 359 0.035 14.1 9.6 2 2 1.5e-05 0.043 13.8 3.0 38 99 234 295 220 302 0.89 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4407 PF14362.6 298 CP009044_00051 - 359 0.058 12.7 1.6 1 1 3.5e-05 0.1 11.9 1.6 102 168 202 297 200 320 0.85 Domain of unknown function (DUF4407) SSB PF00436.25 104 CP009044_00053 - 175 1.8e-29 101.9 0.2 1 1 1.8e-33 3.2e-29 101.0 0.2 2 104 3 105 2 105 0.99 Single-strand binding protein family Toxin-JAB1 PF15659.6 86 CP009044_00054 - 79 0.088 13.2 0.0 1 1 5.9e-06 0.11 12.9 0.0 32 83 14 66 4 69 0.79 JAB-like toxin 1 Dus PF01207.17 310 CP009044_00058 - 158 0.03 13.4 0.1 1 1 2.2e-06 0.04 13.0 0.1 93 155 53 115 33 116 0.92 Dihydrouridine synthase (Dus) SLT PF01464.20 117 CP009044_00059 - 142 4.6e-19 68.2 0.0 1 1 6.8e-23 6.1e-19 67.8 0.0 2 96 21 117 20 123 0.95 Transglycosylase SLT domain Lys PF00062.20 124 CP009044_00059 - 142 0.012 15.8 0.0 1 1 2.1e-06 0.019 15.2 0.0 30 61 38 69 24 83 0.88 C-type lysozyme/alpha-lactalbumin family DUF480 PF04337.12 149 CP009044_00060 - 103 0.0017 18.4 0.1 1 1 2.1e-07 0.0019 18.3 0.1 68 148 3 83 1 84 0.90 Protein of unknown function, DUF480 RdRP_1 PF00680.20 482 CP009044_00060 - 103 0.027 13.0 0.1 1 1 3.4e-06 0.03 12.8 0.1 48 121 11 85 2 98 0.84 RNA dependent RNA polymerase DUF3267 PF11667.8 108 CP009044_00061 - 186 0.042 14.1 8.6 1 2 0.23 4.1e+03 -1.9 0.0 62 84 11 39 5 44 0.51 Putative zincin peptidase DUF3267 PF11667.8 108 CP009044_00061 - 186 0.042 14.1 8.6 2 2 3e-06 0.053 13.8 5.1 6 98 43 154 38 159 0.78 Putative zincin peptidase GGDEF PF00990.21 161 CP009044_00062 - 800 5e-34 117.4 0.6 1 1 3.8e-37 1.1e-33 116.2 0.6 12 161 420 567 417 567 0.89 Diguanylate cyclase, GGDEF domain HD PF01966.22 122 CP009044_00062 - 800 2.7e-05 24.4 0.4 1 4 3.3 9.9e+03 -3.3 0.0 77 98 97 125 81 148 0.62 HD domain HD PF01966.22 122 CP009044_00062 - 800 2.7e-05 24.4 0.4 2 4 9.2e-09 2.7e-05 24.4 0.4 2 95 226 322 225 383 0.71 HD domain HD PF01966.22 122 CP009044_00062 - 800 2.7e-05 24.4 0.4 3 4 1.1 3.2e+03 -1.7 0.1 57 113 530 592 507 596 0.60 HD domain HD PF01966.22 122 CP009044_00062 - 800 2.7e-05 24.4 0.4 4 4 1.7 4.9e+03 -2.3 0.0 64 95 689 722 647 736 0.74 HD domain SporV_AA PF12164.8 89 CP009044_00062 - 800 0.039 14.3 4.1 1 3 1.9e-05 0.057 13.8 0.2 8 48 92 132 91 153 0.85 Stage V sporulation protein AA SporV_AA PF12164.8 89 CP009044_00062 - 800 0.039 14.3 4.1 2 3 0.94 2.8e+03 -1.3 0.1 16 45 391 420 383 430 0.84 Stage V sporulation protein AA SporV_AA PF12164.8 89 CP009044_00062 - 800 0.039 14.3 4.1 3 3 0.87 2.6e+03 -1.1 0.0 33 56 548 570 539 572 0.72 Stage V sporulation protein AA STAR_dimer PF16544.5 53 CP009044_00062 - 800 0.044 13.4 0.3 1 2 4.8e-05 0.14 11.7 0.1 16 37 150 172 146 173 0.78 Homodimerisation region of STAR domain protein STAR_dimer PF16544.5 53 CP009044_00062 - 800 0.044 13.4 0.3 2 2 3.9 1.2e+04 -4.0 0.0 12 26 408 422 407 423 0.81 Homodimerisation region of STAR domain protein Toxin-deaminase PF14424.6 142 CP009044_00062 - 800 0.045 13.9 0.6 1 3 1.5e-05 0.045 13.9 0.6 11 116 91 200 86 209 0.88 The BURPS668_1122 family of deaminases Toxin-deaminase PF14424.6 142 CP009044_00062 - 800 0.045 13.9 0.6 2 3 1.4 4e+03 -2.2 0.2 33 57 376 398 349 444 0.60 The BURPS668_1122 family of deaminases Toxin-deaminase PF14424.6 142 CP009044_00062 - 800 0.045 13.9 0.6 3 3 0.0086 26 4.9 3.4 40 106 613 683 575 692 0.76 The BURPS668_1122 family of deaminases Stealth_CR4 PF17103.5 55 CP009044_00062 - 800 0.081 12.8 0.1 1 2 0.002 6.1 6.8 0.0 3 31 355 387 353 388 0.73 Stealth protein CR4, conserved region 4 Stealth_CR4 PF17103.5 55 CP009044_00062 - 800 0.081 12.8 0.1 2 2 0.035 1e+02 2.9 0.0 9 34 451 477 448 479 0.79 Stealth protein CR4, conserved region 4 TrwB_AAD_bind PF10412.9 386 CP009044_00063 - 458 5.1e-16 58.6 0.0 1 2 1.9e-09 3.1e-06 26.3 0.0 15 55 49 89 40 210 0.88 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP009044_00063 - 458 5.1e-16 58.6 0.0 2 2 1e-10 1.7e-07 30.5 0.0 213 324 278 388 213 402 0.84 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 469 CP009044_00063 - 458 2e-11 43.4 0.6 1 1 1.7e-14 2.8e-11 42.9 0.6 44 385 35 388 5 421 0.79 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP009044_00063 - 458 4.3e-10 39.7 0.0 1 1 5.1e-13 8.3e-10 38.7 0.0 1 83 309 390 309 421 0.93 TraM recognition site of TraD and TraG DUF87 PF01935.17 227 CP009044_00063 - 458 0.0005 20.2 0.3 1 1 2.7e-06 0.0045 17.1 0.3 24 206 50 268 43 292 0.48 Helicase HerA, central domain Zeta_toxin PF06414.12 199 CP009044_00063 - 458 0.0014 17.9 0.0 1 1 2.2e-06 0.0035 16.6 0.0 9 51 43 85 35 87 0.82 Zeta toxin AAA_16 PF13191.6 170 CP009044_00063 - 458 0.0017 18.8 0.0 1 1 2.6e-06 0.0043 17.5 0.0 16 50 41 76 32 108 0.75 AAA ATPase domain ATPase_2 PF01637.18 233 CP009044_00063 - 458 0.0022 18.0 0.0 1 2 6.3e-06 0.01 15.8 0.0 15 58 44 87 35 132 0.83 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 CP009044_00063 - 458 0.0022 18.0 0.0 2 2 2.1 3.5e+03 -2.3 0.0 93 93 283 283 187 332 0.59 ATPase domain predominantly from Archaea DUF853 PF05872.12 504 CP009044_00063 - 458 0.0045 15.6 0.0 1 1 5e-06 0.0082 14.8 0.0 18 71 44 99 29 119 0.77 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 362 CP009044_00063 - 458 0.0054 15.7 0.1 1 3 7.6e-05 0.12 11.2 0.0 20 67 48 95 36 133 0.79 AAA-like domain AAA_10 PF12846.7 362 CP009044_00063 - 458 0.0054 15.7 0.1 2 3 2.4 3.9e+03 -3.6 0.0 130 167 197 239 188 254 0.40 AAA-like domain AAA_10 PF12846.7 362 CP009044_00063 - 458 0.0054 15.7 0.1 3 3 0.057 93 1.8 0.0 264 306 327 376 324 387 0.71 AAA-like domain AAA_22 PF13401.6 137 CP009044_00063 - 458 0.011 16.1 0.0 1 1 2.2e-05 0.036 14.3 0.0 5 29 49 73 45 108 0.80 AAA domain FtsK_SpoIIIE PF01580.18 243 CP009044_00063 - 458 0.095 12.0 0.0 1 1 0.00012 0.2 11.0 0.0 38 60 48 70 22 101 0.82 FtsK/SpoIIIE family HD_5 PF13487.6 64 CP009044_00064 - 193 4.6e-06 26.8 0.0 1 1 4.6e-10 8.2e-06 26.0 0.0 1 50 78 125 78 127 0.95 HD domain GA-like PF17573.2 50 CP009044_00067 - 74 0.035 14.0 0.4 1 2 1.1e-05 0.19 11.6 0.1 15 32 5 22 1 28 0.90 GA-like domain GA-like PF17573.2 50 CP009044_00067 - 74 0.035 14.0 0.4 2 2 0.033 5.9e+02 0.5 0.0 16 24 44 52 40 59 0.72 GA-like domain HTH_3 PF01381.22 55 CP009044_00068 - 76 2.7e-14 52.9 0.0 1 1 1.9e-17 3.3e-14 52.7 0.0 1 55 14 68 14 68 0.99 Helix-turn-helix HTH_19 PF12844.7 65 CP009044_00068 - 76 7.9e-13 48.2 0.0 1 1 4.9e-16 8.8e-13 48.1 0.0 1 64 11 73 11 74 0.95 Helix-turn-helix domain HTH_31 PF13560.6 64 CP009044_00068 - 76 8.3e-08 32.5 0.0 1 1 4.9e-11 8.8e-08 32.4 0.0 1 40 9 48 9 66 0.89 Helix-turn-helix domain HTH_25 PF13413.6 62 CP009044_00068 - 76 0.0011 18.8 0.0 1 1 8.3e-07 0.0015 18.4 0.0 2 34 14 46 13 51 0.94 Helix-turn-helix domain Phage_CI_repr PF07022.13 65 CP009044_00068 - 76 0.0028 17.7 0.0 1 1 2.4e-06 0.0043 17.1 0.0 2 64 13 75 12 76 0.92 Bacteriophage CI repressor helix-turn-helix domain Pou PF00157.17 72 CP009044_00068 - 76 0.026 14.5 0.1 1 1 2.1e-05 0.037 14.0 0.1 3 34 4 35 2 44 0.86 Pou domain - N-terminal to homeobox domain HTH_37 PF13744.6 80 CP009044_00068 - 76 0.047 13.7 0.0 1 1 2.9e-05 0.052 13.5 0.0 21 54 12 45 2 57 0.86 Helix-turn-helix domain MqsA_antitoxin PF15731.5 131 CP009044_00068 - 76 0.055 13.6 0.0 1 1 3.6e-05 0.064 13.4 0.0 71 117 11 57 3 67 0.89 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_23 PF13384.6 50 CP009044_00068 - 76 0.064 13.1 0.0 1 2 8e-05 0.14 12.0 0.0 10 37 14 42 12 50 0.84 Homeodomain-like domain HTH_23 PF13384.6 50 CP009044_00068 - 76 0.064 13.1 0.0 2 2 2.5 4.5e+03 -2.3 0.0 25 33 59 67 56 68 0.77 Homeodomain-like domain WYL_3 PF18488.1 63 CP009044_00068 - 76 0.081 13.3 0.0 1 1 6.9e-05 0.12 12.7 0.0 8 41 14 49 10 51 0.79 WYL domain SNase PF00565.17 108 CP009044_00069 - 172 4.4e-17 62.5 0.1 1 1 3.1e-21 5.5e-17 62.2 0.1 2 107 43 161 42 162 0.91 Staphylococcal nuclease homologue AAA_25 PF13481.6 194 CP009044_00072 - 389 5.9e-17 61.9 0.0 1 1 1.1e-20 9.6e-17 61.2 0.0 20 193 154 319 144 320 0.83 AAA domain DnaB PF00772.21 103 CP009044_00072 - 389 1.3e-06 28.4 0.3 1 1 3.2e-10 2.9e-06 27.3 0.3 4 101 7 95 4 97 0.85 DnaB-like helicase N terminal domain Thioredoxin_2 PF13098.6 109 CP009044_00073 - 139 2.7e-05 24.6 0.2 1 1 3.7e-08 0.00022 21.6 0.2 1 109 33 126 33 126 0.75 Thioredoxin-like domain Thioredoxin_7 PF13899.6 83 CP009044_00073 - 139 3.2e-05 24.0 0.0 1 1 7.1e-09 4.3e-05 23.6 0.0 8 83 28 104 22 104 0.80 Thioredoxin-like Thioredox_DsbH PF03190.15 163 CP009044_00073 - 139 0.00012 22.1 0.1 1 1 5.1e-08 0.0003 20.8 0.1 28 79 28 79 23 111 0.90 Protein of unknown function, DUF255 VSG_B PF13206.6 356 CP009044_00074 - 61 0.018 14.3 0.9 1 1 3e-06 0.018 14.3 0.9 124 177 4 57 1 61 0.86 Trypanosomal VSG domain HSCB_C PF07743.13 76 CP009044_00074 - 61 0.019 15.5 2.0 1 1 3.4e-06 0.021 15.3 2.0 10 57 1 50 1 58 0.83 HSCB C-terminal oligomerisation domain YtxH PF12732.7 75 CP009044_00074 - 61 0.034 14.7 0.1 1 1 7.6e-06 0.045 14.3 0.1 30 71 3 44 1 46 0.89 YtxH-like protein TrbC_Ftype PF09673.10 112 CP009044_00075 - 313 9.3e-17 61.1 0.0 1 1 2.4e-20 2.2e-16 59.9 0.0 1 112 159 288 159 288 0.87 Type-F conjugative transfer system pilin assembly protein DUF3388 PF11868.8 190 CP009044_00075 - 313 0.035 13.4 0.2 1 2 0.051 4.6e+02 0.0 0.1 92 134 93 136 87 141 0.82 Protein of unknown function (DUF3388) DUF3388 PF11868.8 190 CP009044_00075 - 313 0.035 13.4 0.2 2 2 3e-05 0.27 10.5 0.0 79 132 155 209 152 213 0.82 Protein of unknown function (DUF3388) EAL PF00563.20 238 CP009044_00076 - 262 3.4e-28 98.8 0.0 1 1 2.5e-32 4.6e-28 98.4 0.0 3 238 32 253 30 253 0.84 EAL domain TraU PF06834.11 307 CP009044_00077 - 331 8.2e-100 334.0 0.4 1 1 5.2e-104 9.4e-100 333.8 0.4 2 306 34 330 33 331 0.95 TraU protein TraF PF13728.6 224 CP009044_00079 - 255 3e-30 105.7 10.7 1 1 3.9e-34 3.5e-30 105.5 10.7 1 222 29 241 29 243 0.88 F plasmid transfer operon protein KaiB PF07689.12 82 CP009044_00079 - 255 0.055 13.2 0.2 1 2 0.017 1.5e+02 2.2 0.1 6 43 86 123 82 127 0.87 KaiB domain KaiB PF07689.12 82 CP009044_00079 - 255 0.055 13.2 0.2 2 2 0.00017 1.5 8.6 0.0 26 53 183 210 164 211 0.79 KaiB domain TraG_N PF07916.11 467 CP009044_00080 - 1166 1.7e-51 175.6 17.8 1 3 9.4e-56 1.7e-51 175.6 17.8 2 466 23 474 22 475 0.85 TraG-like protein, N-terminal region TraG_N PF07916.11 467 CP009044_00080 - 1166 1.7e-51 175.6 17.8 2 3 0.009 1.6e+02 0.9 6.0 215 337 504 625 495 628 0.60 TraG-like protein, N-terminal region TraG_N PF07916.11 467 CP009044_00080 - 1166 1.7e-51 175.6 17.8 3 3 0.4 7.2e+03 -4.5 1.4 252 299 684 730 670 749 0.43 TraG-like protein, N-terminal region YfhO PF09586.10 839 CP009044_00081 - 100 0.016 13.5 2.6 1 1 3.1e-06 0.018 13.3 2.6 185 264 18 94 10 97 0.84 Bacterial membrane protein YfhO DUF1189 PF06691.11 244 CP009044_00081 - 100 0.017 14.7 2.0 1 1 3.4e-06 0.02 14.5 2.0 20 62 12 57 2 99 0.69 Protein of unknown function (DUF1189) Herpes_LMP1 PF05297.11 386 CP009044_00081 - 100 0.068 12.4 3.2 1 1 1.4e-05 0.083 12.1 3.2 24 75 17 72 11 78 0.79 Herpesvirus latent membrane protein 1 (LMP1) RHH_3 PF12651.7 44 CP009044_00082 - 100 0.0013 18.6 1.3 1 2 0.9 8e+03 -3.1 0.0 9 17 22 30 19 32 0.59 Ribbon-helix-helix domain RHH_3 PF12651.7 44 CP009044_00082 - 100 0.0013 18.6 1.3 2 2 3.1e-07 0.0028 17.6 0.8 3 37 43 77 41 78 0.92 Ribbon-helix-helix domain DUF5123 PF17161.4 115 CP009044_00082 - 100 0.058 14.5 0.9 1 1 7.6e-06 0.068 14.2 0.9 22 79 12 70 3 89 0.74 Domain of unknown function (DUF5123) UvrB_inter PF17757.1 91 CP009044_00083 - 198 0.052 13.7 0.2 1 1 7.7e-06 0.14 12.4 0.2 2 73 6 75 5 90 0.84 UvrB interaction domain ALP_N PF17989.1 147 CP009044_00085 - 305 5.9e-15 55.7 0.1 1 1 1.3e-18 1.1e-14 54.8 0.1 1 147 11 144 11 144 0.78 Actin like proteins N terminal domain FtsA PF14450.6 103 CP009044_00085 - 305 0.00012 22.5 0.1 1 2 0.0021 19 5.8 0.0 1 17 10 26 10 41 0.87 Cell division protein FtsA FtsA PF14450.6 103 CP009044_00085 - 305 0.00012 22.5 0.1 2 2 3.5e-06 0.031 14.7 0.0 1 52 159 214 159 293 0.75 Cell division protein FtsA DBR1 PF05011.13 139 CP009044_00086 - 97 0.0072 16.8 1.1 1 1 4.5e-07 0.0081 16.6 1.1 67 128 32 93 6 95 0.78 Lariat debranching enzyme, C-terminal domain Acetyltransf_9 PF13527.7 128 CP009044_00088 - 90 0.099 12.7 0.0 1 1 9.1e-06 0.16 12.0 0.0 78 112 4 38 1 73 0.90 Acetyltransferase (GNAT) domain SSXT PF05030.12 62 CP009044_00090 - 121 0.022 14.4 0.0 1 1 4.2e-06 0.037 13.6 0.0 4 26 27 49 24 77 0.89 SSXT protein (N-terminal region) NMT PF01233.19 160 CP009044_00090 - 121 0.092 12.6 0.6 1 1 1.3e-05 0.11 12.3 0.6 11 45 5 39 1 109 0.88 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain AbiH PF14253.6 267 CP009044_00092 - 141 0.023 14.6 1.3 1 1 1.6e-06 0.03 14.2 1.3 105 182 25 123 2 140 0.57 Bacteriophage abortive infection AbiH ANT PF03374.14 108 CP009044_00093 - 70 0.041 14.2 0.0 1 1 5e-06 0.045 14.1 0.0 24 83 11 68 6 70 0.91 Phage antirepressor protein KilAC domain PhetRS_B1 PF18262.1 83 CP009044_00093 - 70 0.062 13.5 0.2 1 1 8.5e-06 0.076 13.2 0.2 4 48 20 64 18 70 0.85 Phe-tRNA synthetase beta subunit B1 domain AAA_19 PF13245.6 146 CP009044_00095 - 484 2.8e-13 50.4 0.0 1 1 3.8e-16 7.5e-13 49.0 0.0 1 146 7 233 7 233 0.86 AAA domain UvrD-helicase PF00580.21 315 CP009044_00095 - 484 4.2e-13 49.5 7.9 1 2 1.9e-11 3.8e-08 33.2 2.3 254 303 190 236 3 240 0.66 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 CP009044_00095 - 484 4.2e-13 49.5 7.9 2 2 0.44 8.8e+02 -0.8 0.3 172 199 375 402 287 479 0.64 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 349 CP009044_00095 - 484 3.2e-12 46.5 2.8 1 2 0.41 8.1e+02 -0.9 0.0 264 294 45 76 31 77 0.80 UvrD-like helicase C-terminal domain UvrD_C PF13361.6 349 CP009044_00095 - 484 3.2e-12 46.5 2.8 2 2 5.8e-15 1.2e-11 44.7 1.9 236 344 347 463 292 465 0.75 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 52 CP009044_00095 - 484 5.1e-09 35.8 0.0 1 2 1 2e+03 -1.3 0.0 14 28 14 28 13 48 0.80 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 52 CP009044_00095 - 484 5.1e-09 35.8 0.0 2 2 1.4e-11 2.9e-08 33.4 0.0 5 51 408 463 405 463 0.84 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 234 CP009044_00095 - 484 1.1e-08 35.1 0.7 1 4 0.0083 17 5.1 0.0 2 23 20 44 19 82 0.70 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 CP009044_00095 - 484 1.1e-08 35.1 0.7 2 4 3.1 6.1e+03 -3.3 0.0 121 145 108 131 101 154 0.67 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 CP009044_00095 - 484 1.1e-08 35.1 0.7 3 4 2.7e-06 0.0055 16.5 0.0 45 141 176 265 156 313 0.76 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 CP009044_00095 - 484 1.1e-08 35.1 0.7 4 4 0.00023 0.47 10.2 0.0 183 231 395 462 309 464 0.74 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 192 CP009044_00095 - 484 0.00014 21.6 0.1 1 3 1.1e-06 0.0023 17.7 0.0 2 68 3 64 2 97 0.74 AAA domain AAA_30 PF13604.6 192 CP009044_00095 - 484 0.00014 21.6 0.1 2 3 0.5 9.9e+02 -0.7 0.0 90 127 194 227 166 260 0.73 AAA domain AAA_30 PF13604.6 192 CP009044_00095 - 484 0.00014 21.6 0.1 3 3 0.38 7.6e+02 -0.3 0.0 148 175 371 398 359 410 0.83 AAA domain PhoH PF02562.16 205 CP009044_00095 - 484 0.00093 18.7 0.0 1 2 0.0078 16 4.9 0.0 6 34 4 31 1 54 0.81 PhoH-like protein PhoH PF02562.16 205 CP009044_00095 - 484 0.00093 18.7 0.0 2 2 9.2e-05 0.18 11.2 0.0 122 181 195 248 190 267 0.74 PhoH-like protein ResIII PF04851.15 171 CP009044_00095 - 484 0.011 15.7 5.8 1 2 1.4e-05 0.027 14.5 1.5 25 141 17 201 1 236 0.68 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP009044_00095 - 484 0.011 15.7 5.8 2 2 0.16 3.3e+02 1.2 0.2 97 140 363 409 323 431 0.59 Type III restriction enzyme, res subunit AAA_11 PF13086.6 261 CP009044_00095 - 484 0.017 15.0 0.3 1 3 0.003 6.1 6.6 0.0 18 56 17 63 3 68 0.65 AAA domain AAA_11 PF13086.6 261 CP009044_00095 - 484 0.017 15.0 0.3 2 3 0.016 31 4.2 0.0 210 253 185 227 179 227 0.84 AAA domain AAA_11 PF13086.6 261 CP009044_00095 - 484 0.017 15.0 0.3 3 3 0.27 5.4e+02 0.2 0.1 124 182 380 435 331 452 0.55 AAA domain RNase_T PF00929.24 165 CP009044_00097 - 100 0.036 14.6 0.1 1 1 2.3e-06 0.04 14.4 0.1 58 116 12 69 2 89 0.79 Exonuclease MrpF_PhaF PF04066.13 53 CP009044_00106 - 93 0.01 16.2 1.3 1 2 1.7e-06 0.01 16.2 1.3 33 49 4 20 1 22 0.94 Multiple resistance and pH regulation protein F (MrpF / PhaF) MrpF_PhaF PF04066.13 53 CP009044_00106 - 93 0.01 16.2 1.3 2 2 0.78 4.6e+03 -1.9 2.4 45 45 56 56 38 78 0.61 Multiple resistance and pH regulation protein F (MrpF / PhaF) UPF0242 PF06785.11 193 CP009044_00106 - 93 0.026 14.6 1.1 1 1 4.6e-06 0.028 14.5 1.1 25 62 24 79 3 91 0.82 Uncharacterised protein family (UPF0242) N-terminus UPF0016 PF01169.19 75 CP009044_00106 - 93 0.039 14.3 7.1 1 2 1.5e-05 0.089 13.1 0.8 35 75 5 56 3 56 0.92 Uncharacterized protein family UPF0016 UPF0016 PF01169.19 75 CP009044_00106 - 93 0.039 14.3 7.1 2 2 0.0078 47 4.4 1.5 29 51 57 79 56 92 0.79 Uncharacterized protein family UPF0016 TraL PF07178.11 90 CP009044_00107 - 100 2.4e-12 47.2 1.0 1 1 3.1e-16 2.7e-12 47.0 1.0 2 90 9 98 8 98 0.86 TraL protein ThrE PF06738.12 241 CP009044_00107 - 100 0.024 14.0 0.3 1 1 2.9e-06 0.026 13.9 0.3 99 163 14 78 4 83 0.87 Putative threonine/serine exporter TraE PF05309.11 182 CP009044_00108 - 187 2e-34 118.5 1.7 1 1 2.8e-38 2.5e-34 118.3 1.7 2 180 2 180 1 181 0.96 TraE protein MadM PF03818.13 59 CP009044_00108 - 187 0.047 13.6 0.2 1 1 1.4e-05 0.12 12.2 0.2 13 38 22 47 17 49 0.93 Malonate/sodium symporter MadM subunit TraK PF06586.11 231 CP009044_00109 - 257 9.5e-24 84.4 3.7 1 1 2e-27 3.6e-23 82.5 3.7 6 206 5 218 3 233 0.88 TraK protein TrbI PF03743.14 187 CP009044_00110 - 427 3.5e-33 115.0 1.1 1 1 1.6e-36 4.8e-33 114.6 1.1 2 186 207 408 206 409 0.94 Bacterial conjugation TrbI-like protein Bap31_Bap29_C PF18035.1 50 CP009044_00110 - 427 0.0036 17.3 1.3 1 1 3.6e-06 0.011 15.7 1.3 16 42 78 111 62 120 0.79 Bap31/Bap29 cytoplasmic coiled-coil domain HALZ PF02183.18 43 CP009044_00110 - 427 0.0052 17.0 2.6 1 1 3.5e-06 0.01 16.0 2.6 19 41 84 106 83 107 0.91 Homeobox associated leucine zipper bZIP_1 PF00170.21 64 CP009044_00110 - 427 0.0093 16.1 2.9 1 1 8.9e-06 0.027 14.6 2.9 33 62 84 113 80 115 0.93 bZIP transcription factor UPF0242 PF06785.11 193 CP009044_00110 - 427 0.046 13.8 1.5 1 1 2.8e-05 0.083 13.0 1.5 36 134 29 131 17 134 0.65 Uncharacterised protein family (UPF0242) N-terminus DivIC PF04977.15 80 CP009044_00110 - 427 0.094 12.5 3.1 1 1 7.8e-05 0.23 11.2 3.1 18 54 78 114 74 120 0.80 Septum formation initiator Thioredoxin_2 PF13098.6 109 CP009044_00111 - 271 3.3e-16 59.7 0.1 1 1 3.7e-19 6.6e-16 58.7 0.1 3 100 135 254 133 263 0.92 Thioredoxin-like domain DsbC_N PF10411.9 54 CP009044_00111 - 271 1.3e-07 30.9 0.1 1 1 1.7e-10 3e-07 29.8 0.1 4 51 45 93 42 96 0.93 Disulfide bond isomerase protein N-terminus Thioredoxin_4 PF13462.6 166 CP009044_00111 - 271 1.3e-06 28.7 2.0 1 2 2.1e-06 0.0038 17.4 0.3 7 68 131 188 125 190 0.71 Thioredoxin Thioredoxin_4 PF13462.6 166 CP009044_00111 - 271 1.3e-06 28.7 2.0 2 2 0.00047 0.85 9.8 0.1 93 149 180 241 175 258 0.64 Thioredoxin DSBA PF01323.20 193 CP009044_00111 - 271 1.3e-06 28.3 0.3 1 2 5.7e-06 0.01 15.6 0.1 3 79 142 213 140 215 0.86 DSBA-like thioredoxin domain DSBA PF01323.20 193 CP009044_00111 - 271 1.3e-06 28.3 0.3 2 2 4.4e-05 0.079 12.7 0.0 146 181 211 248 208 263 0.77 DSBA-like thioredoxin domain Glutaredoxin PF00462.24 60 CP009044_00111 - 271 0.0039 17.4 0.3 1 2 2.1e-05 0.038 14.2 0.1 2 22 142 162 141 173 0.84 Glutaredoxin Glutaredoxin PF00462.24 60 CP009044_00111 - 271 0.0039 17.4 0.3 2 2 0.41 7.4e+02 0.5 0.0 36 55 213 238 189 242 0.64 Glutaredoxin ATPgrasp_YheCD PF14398.6 256 CP009044_00111 - 271 0.0088 15.3 0.1 1 1 7.5e-06 0.014 14.7 0.1 159 229 177 246 174 263 0.86 YheC/D like ATP-grasp TraF PF13728.6 224 CP009044_00111 - 271 0.013 15.3 0.1 1 2 0.0035 6.2 6.6 0.0 128 150 136 158 120 165 0.87 F plasmid transfer operon protein TraF PF13728.6 224 CP009044_00111 - 271 0.013 15.3 0.1 2 2 0.0041 7.4 6.3 0.0 185 211 225 251 206 254 0.80 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 76 CP009044_00111 - 271 0.021 14.9 1.1 1 3 0.0066 12 6.0 0.0 5 22 143 161 139 166 0.80 Thioredoxin domain Thioredoxin_3 PF13192.6 76 CP009044_00111 - 271 0.021 14.9 1.1 2 3 0.29 5.2e+02 0.8 0.0 33 53 192 214 177 227 0.69 Thioredoxin domain Thioredoxin_3 PF13192.6 76 CP009044_00111 - 271 0.021 14.9 1.1 3 3 0.0055 9.8 6.3 0.4 17 72 196 256 190 260 0.68 Thioredoxin domain Thioredoxin_8 PF13905.6 95 CP009044_00111 - 271 0.04 14.2 0.4 1 1 0.0001 0.18 12.1 0.4 2 94 138 244 137 246 0.68 Thioredoxin-like Thioredoxin_5 PF13743.6 186 CP009044_00111 - 271 0.071 12.8 0.4 1 2 0.0038 6.9 6.3 0.4 2 24 143 165 142 201 0.80 Thioredoxin Thioredoxin_5 PF13743.6 186 CP009044_00111 - 271 0.071 12.8 0.4 2 2 0.015 27 4.4 0.0 137 170 212 245 175 259 0.70 Thioredoxin TraV PF09676.10 132 CP009044_00112 - 240 0.0043 18.0 5.3 1 1 2.7e-06 0.0097 16.9 5.2 1 51 27 76 27 182 0.79 Type IV conjugative transfer system lipoprotein (TraV) SH3_4 PF06347.13 56 CP009044_00112 - 240 0.0063 16.3 0.0 1 1 3.9e-06 0.014 15.2 0.0 4 52 192 235 190 238 0.91 Bacterial SH3 domain SH3_3 PF08239.11 55 CP009044_00112 - 240 0.013 15.7 0.1 1 1 9e-06 0.032 14.5 0.1 2 45 192 231 191 235 0.91 Bacterial SH3 domain Transketolase_N PF00456.21 334 CP009044_00112 - 240 0.049 12.6 0.3 1 1 2.4e-05 0.085 11.8 0.3 213 292 91 170 65 213 0.80 Transketolase, thiamine diphosphate binding domain Herpes_glycop_D PF01537.17 124 CP009044_00112 - 240 0.052 13.7 0.0 1 1 2.5e-05 0.089 13.0 0.0 35 77 6 48 1 61 0.87 Herpesvirus glycoprotein D/GG/GX domain SH3_3 PF08239.11 55 CP009044_00113 - 191 5.6e-05 23.3 0.1 1 1 6.6e-08 0.00012 22.3 0.1 6 54 136 183 133 184 0.82 Bacterial SH3 domain ADIP PF11559.8 152 CP009044_00113 - 191 0.0013 18.8 3.7 1 1 1.3e-06 0.0023 18.0 3.7 64 123 32 91 22 98 0.86 Afadin- and alpha -actinin-Binding Sec34 PF04136.15 149 CP009044_00113 - 191 0.0038 17.1 1.5 1 1 3e-06 0.0054 16.6 1.5 4 64 36 96 33 126 0.89 Sec34-like family CLZ PF16526.5 71 CP009044_00113 - 191 0.0068 16.7 4.4 1 2 0.00098 1.8 9.0 0.0 34 61 31 58 24 60 0.91 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CLZ PF16526.5 71 CP009044_00113 - 191 0.0068 16.7 4.4 2 2 0.0027 4.8 7.6 2.2 30 57 62 89 59 92 0.75 C-terminal leucine zipper domain of cyclic nucleotide-gated channels SMC_ScpB PF04079.16 160 CP009044_00113 - 191 0.0085 15.7 1.4 1 1 7e-06 0.013 15.2 1.4 23 93 33 103 7 115 0.86 Segregation and condensation complex subunit ScpB V_ATPase_I PF01496.19 813 CP009044_00113 - 191 0.022 12.7 3.4 1 1 1.4e-05 0.025 12.5 3.4 44 147 31 137 20 180 0.53 V-type ATPase 116kDa subunit family HrpB7 PF09486.10 157 CP009044_00113 - 191 0.03 14.7 0.6 1 1 2.5e-05 0.045 14.1 0.6 65 142 16 91 5 98 0.89 Bacterial type III secretion protein (HrpB7) Cob_adeno_trans PF01923.18 164 CP009044_00113 - 191 0.041 14.0 1.6 1 1 3.8e-05 0.067 13.3 1.6 22 73 41 95 23 146 0.62 Cobalamin adenosyltransferase Spectrin PF00435.21 105 CP009044_00113 - 191 0.046 14.2 2.7 1 1 6e-05 0.11 13.0 2.7 6 68 29 90 25 97 0.86 Spectrin repeat M PF02370.16 21 CP009044_00113 - 191 0.072 13.7 6.6 1 1 0.00017 0.31 11.7 6.6 1 20 63 82 63 83 0.92 M protein repeat Toprim_3 PF13362.6 95 CP013735_00001 - 410 2.4e-08 34.2 0.1 1 2 1.1 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 CP013735_00001 - 410 2.4e-08 34.2 0.1 2 2 1.1e-11 6.4e-08 32.8 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 CP013735_00001 - 410 0.016 15.5 0.1 1 2 0.018 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 CP013735_00001 - 410 0.016 15.5 0.1 2 2 0.00021 1.2 9.4 0.0 15 83 283 359 277 378 0.81 Retrotransposon gag protein DUF2315 PF10231.9 123 CP013735_00001 - 410 0.055 13.6 8.2 1 3 0.00021 1.3 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP013735_00001 - 410 0.055 13.6 8.2 2 3 0.0012 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP013735_00001 - 410 0.055 13.6 8.2 3 3 0.7 4.2e+03 -2.2 0.0 80 91 363 374 339 402 0.61 Apoptogenic protein 1 DUF4223 PF13978.6 54 CP013735_00002 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 CP013735_00002 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) TOPRIM_C PF16898.5 128 CP013735_00003 - 69 0.029 14.7 1.5 1 1 1.7e-06 0.031 14.6 1.5 63 124 8 68 2 69 0.88 C-terminal associated domain of TOPRIM Pkinase PF00069.25 264 CP013735_00004 - 390 2.6e-30 105.7 7.7 1 1 1.2e-33 4.2e-30 105.0 7.7 5 202 156 356 153 390 0.81 Protein kinase domain Pkinase_Tyr PF07714.17 259 CP013735_00004 - 390 1.6e-26 93.2 0.7 1 1 6.2e-30 2.2e-26 92.7 0.7 6 163 157 308 154 380 0.85 Protein tyrosine kinase Pkinase_fungal PF17667.1 408 CP013735_00004 - 390 4.7e-06 25.6 0.7 1 1 2e-09 7e-06 25.1 0.7 314 364 254 301 240 319 0.77 Fungal protein kinase DUF2841 PF11001.8 124 CP013735_00004 - 390 0.0036 17.4 0.7 1 2 2.2 7.8e+03 -3.1 0.0 10 56 22 69 17 74 0.59 Protein of unknown function (DUF2841) DUF2841 PF11001.8 124 CP013735_00004 - 390 0.0036 17.4 0.7 2 2 3.3e-06 0.012 15.7 0.7 15 88 179 263 162 323 0.71 Protein of unknown function (DUF2841) ORC6 PF05460.13 357 CP013735_00004 - 390 0.011 15.0 0.2 1 1 4.6e-06 0.016 14.5 0.2 192 282 163 254 117 268 0.79 Origin recognition complex subunit 6 (ORC6) HicB_lk_antitox PF15919.5 123 CP013735_00006 - 72 3.6e-09 36.8 0.0 1 1 4.2e-13 3.8e-09 36.7 0.0 3 60 5 61 3 71 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 CP013735_00006 - 72 0.065 12.6 0.0 1 1 7.9e-06 0.071 12.5 0.0 12 60 21 69 15 72 0.92 IRSp53/MIM homology domain AAA_25 PF13481.6 194 CP013735_00007 - 597 1.8e-15 57.0 0.0 1 1 9.2e-19 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 CP013735_00007 - 597 0.00087 18.7 0.0 1 2 1.1e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP013735_00007 - 597 0.00087 18.7 0.0 2 2 0.018 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP013735_00007 - 597 0.0012 18.6 0.0 1 2 6.7e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP013735_00007 - 597 0.0012 18.6 0.0 2 2 0.095 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 CP013735_00007 - 597 0.0035 17.1 0.0 1 1 2e-06 0.0073 16.0 0.0 5 122 36 172 32 207 0.72 AAA domain ATPase PF06745.13 231 CP013735_00007 - 597 0.011 15.1 0.1 1 2 1.8e-05 0.064 12.6 0.0 16 70 30 83 26 214 0.87 KaiC ATPase PF06745.13 231 CP013735_00007 - 597 0.011 15.1 0.1 2 2 0.42 1.5e+03 -1.7 0.0 137 160 329 352 321 358 0.83 KaiC GBR_NSP5 PF17580.2 176 CP013735_00008 - 150 0.011 15.6 0.4 1 1 1.3e-06 0.022 14.6 0.4 17 64 43 90 25 98 0.78 Group B Rotavirus Non-structural protein 5 Resolvase PF00239.21 146 CP013735_00010 - 204 1.6e-33 115.9 0.7 1 1 3.5e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP013735_00010 - 204 0.024 14.4 0.8 1 3 0.88 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP013735_00010 - 204 0.024 14.4 0.8 2 3 0.00044 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 CP013735_00010 - 204 0.024 14.4 0.8 3 3 0.0078 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP013735_00010 - 204 0.028 14.5 4.9 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP013735_00010 - 204 0.028 14.5 4.9 2 3 0.96 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP013735_00010 - 204 0.028 14.5 4.9 3 3 0.0097 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain CRISPR_Cas2 PF09827.9 76 CP013735_00011 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP013735_00011 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 CP013735_00011 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 CP013735_00013 - 87 4.9e-14 52.3 5.8 1 1 3.1e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family CagE_TrbE_VirB PF03135.14 206 CP013735_00014 - 922 7.6e-52 176.4 0.8 1 1 4.1e-55 1.9e-51 175.1 0.8 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP013735_00014 - 922 7.3e-21 74.2 1.2 1 1 2.8e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 CP013735_00014 - 922 3.8e-07 29.3 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 CP013735_00014 - 922 0.038 14.1 5.5 1 5 0.46 2.1e+03 -1.4 0.1 96 202 139 253 124 278 0.55 Helicase HerA, central domain DUF87 PF01935.17 227 CP013735_00014 - 922 0.038 14.1 5.5 2 5 0.36 1.6e+03 -1.0 0.1 88 126 264 300 242 418 0.70 Helicase HerA, central domain DUF87 PF01935.17 227 CP013735_00014 - 922 0.038 14.1 5.5 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 CP013735_00014 - 922 0.038 14.1 5.5 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 CP013735_00014 - 922 0.038 14.1 5.5 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain Phage_pRha PF09669.10 88 CP013735_00015 - 185 6.7e-29 100.3 0.0 1 1 2.4e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 CP013735_00015 - 185 0.0015 18.6 0.0 1 1 6.9e-07 0.0031 17.6 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 CP013735_00015 - 185 0.026 14.1 0.3 1 2 0.04 1.8e+02 1.6 0.1 80 118 33 71 5 80 0.74 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 CP013735_00015 - 185 0.026 14.1 0.3 2 2 6.7e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 CP013735_00015 - 185 0.081 12.9 0.1 1 1 4.9e-05 0.22 11.5 0.0 77 131 80 130 69 134 0.85 Family of unknown function (DUF5512) DUF3895 PF13034.6 76 CP013735_00016 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 CP013735_00016 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) SSB PF00436.25 104 CP013735_00017 - 141 7e-25 87.1 0.1 1 1 4.9e-29 8.8e-25 86.8 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 CP013735_00018 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP013735_00018 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP013735_00018 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP013735_00018 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP013735_00018 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP013735_00018 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP013735_00018 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 CP013735_00019 - 323 4.7e-28 98.9 14.1 1 1 1.7e-31 6.1e-28 98.6 14.1 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 CP013735_00019 - 323 0.0059 16.7 0.7 1 2 0.71 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP013735_00019 - 323 0.0059 16.7 0.7 2 2 5.7e-06 0.02 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CP013735_00019 - 323 0.011 16.4 5.4 1 3 0.042 1.5e+02 3.0 0.3 92 135 104 145 41 149 0.59 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP013735_00019 - 323 0.011 16.4 5.4 2 3 0.074 2.6e+02 2.2 0.5 52 135 111 145 93 185 0.58 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP013735_00019 - 323 0.011 16.4 5.4 3 3 3.2e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 CP013735_00019 - 323 0.066 12.7 0.2 1 2 0.011 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 CP013735_00019 - 323 0.066 12.7 0.2 2 2 0.002 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 CP013735_00019 - 323 0.069 13.8 0.9 1 2 1.4 4.9e+03 -1.8 0.0 55 72 124 141 101 172 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP013735_00019 - 323 0.069 13.8 0.9 2 2 1.9e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain TrbL PF04610.14 215 CP013735_00020 - 332 2.8e-30 105.7 31.4 1 2 1.6e-34 2.8e-30 105.7 31.4 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP013735_00020 - 332 2.8e-30 105.7 31.4 2 2 0.079 1.4e+03 -1.2 0.1 61 91 293 329 260 332 0.58 TrbL/VirB6 plasmid conjugal transfer protein Trep_dent_lipo PF09710.10 397 CP013735_00021 - 55 0.016 14.1 0.0 1 1 9.1e-07 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) VirB8 PF04335.13 214 CP013735_00022 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CP013735_00022 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 CP013735_00023 - 295 2e-54 184.5 1.5 1 1 3.7e-58 3.3e-54 183.8 1.5 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CP013735_00023 - 295 0.072 12.9 0.5 1 2 1.8e-05 0.16 11.8 0.0 1 51 1 51 1 66 0.92 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CP013735_00023 - 295 0.072 12.9 0.5 2 2 1.1 9.7e+03 -3.7 0.1 50 62 130 142 124 149 0.68 Domain of unknown function (DUF4354) TrbI PF03743.14 187 CP013735_00024 - 391 3.3e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP013735_00024 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 CP013735_00025 - 330 6.3e-54 182.9 0.0 1 1 1.1e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP013735_00025 - 330 6e-05 23.6 0.0 1 1 1.8e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP013735_00025 - 330 0.00016 21.2 0.0 1 1 3.7e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP013735_00025 - 330 0.00021 20.8 0.0 1 1 5.6e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP013735_00025 - 330 0.0014 18.9 0.0 1 1 3.8e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CP013735_00025 - 330 0.0026 17.5 0.0 1 1 7.8e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CP013735_00025 - 330 0.003 17.3 0.0 1 1 7e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CP013735_00025 - 330 0.0036 17.3 0.0 1 1 1.1e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP013735_00025 - 330 0.0048 15.9 0.0 1 1 1.1e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CP013735_00025 - 330 0.0072 16.3 0.0 1 1 1.8e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP013735_00025 - 330 0.0086 15.4 0.0 1 1 2.1e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP013735_00025 - 330 0.0087 16.0 0.0 1 1 1.8e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CP013735_00025 - 330 0.018 14.8 0.0 1 1 5.4e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CP013735_00025 - 330 0.019 15.0 0.0 1 1 6.1e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CP013735_00025 - 330 0.021 13.7 0.0 1 1 5e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP013735_00025 - 330 0.023 14.8 0.1 1 1 6.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CP013735_00025 - 330 0.024 14.4 0.0 1 1 7.9e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CP013735_00025 - 330 0.032 14.3 0.1 1 1 0.00015 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CP013735_00025 - 330 0.035 13.6 0.0 1 1 8.4e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CP013735_00025 - 330 0.036 14.4 0.0 1 2 9.8 6.5e+03 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CP013735_00025 - 330 0.036 14.4 0.0 2 2 0.00016 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CP013735_00025 - 330 0.037 13.8 0.0 1 1 9.3e-05 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP013735_00025 - 330 0.039 13.2 0.0 1 1 0.0001 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CP013735_00025 - 330 0.051 13.3 0.0 1 1 0.00016 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP013735_00025 - 330 0.063 11.9 0.0 1 1 0.00013 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP013735_00025 - 330 0.064 13.6 0.0 1 1 0.00015 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CP013735_00025 - 330 0.084 12.8 0.3 1 1 0.00033 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CP013735_00025 - 330 0.088 12.7 0.0 1 1 0.00029 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B T4SS-DNA_transf PF02534.14 469 CP013735_00026 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP013735_00026 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP013735_00026 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP013735_00026 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CP013735_00026 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 CP013735_00027 - 145 5.5e-17 62.1 0.4 1 1 7.7e-21 6.9e-17 61.8 0.4 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 CP013735_00027 - 145 0.068 13.0 0.2 1 1 2.2e-05 0.19 11.5 0.2 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) TrbM PF07424.11 156 CP013735_00028 - 216 8.4e-36 123.3 1.7 1 1 6e-40 1.1e-35 122.9 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 CP013735_00029 - 265 0.038 13.8 0.4 1 2 0.3 5.4e+03 -2.9 0.1 129 153 22 46 15 49 0.68 PRELI-like family PRELI PF04707.14 157 CP013735_00029 - 265 0.038 13.8 0.4 2 2 2.1e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Redoxin PF08534.10 147 CP013735_00031 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP013735_00031 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 CP013735_00032 - 730 1.1e-97 327.7 8.1 1 1 9.6e-101 1.6e-97 327.2 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP013735_00032 - 730 4.4e-12 46.1 2.6 1 2 3.9e-15 6.4e-12 45.6 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP013735_00032 - 730 4.4e-12 46.1 2.6 2 2 2.5 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 CP013735_00032 - 730 5.6e-08 32.4 15.3 1 2 1e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP013735_00032 - 730 5.6e-08 32.4 15.3 2 2 5.2e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP013735_00032 - 730 1e-05 25.7 2.3 1 3 5.7 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP013735_00032 - 730 1e-05 25.7 2.3 2 3 0.00025 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP013735_00032 - 730 1e-05 25.7 2.3 3 3 2.6e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CP013735_00032 - 730 0.012 15.7 1.3 1 2 0.0053 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP013735_00032 - 730 0.012 15.7 1.3 2 2 0.0031 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CP013735_00032 - 730 0.028 14.9 8.1 1 3 7.9 1.3e+04 -3.1 0.2 7 15 476 484 475 485 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP013735_00032 - 730 0.028 14.9 8.1 2 3 0.00073 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP013735_00032 - 730 0.028 14.9 8.1 3 3 0.00079 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 CP013735_00032 - 730 0.039 14.1 3.0 1 2 0.033 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 CP013735_00032 - 730 0.039 14.1 3.0 2 2 0.00081 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 CP013735_00032 - 730 0.056 14.3 2.8 1 2 0.0048 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP013735_00032 - 730 0.056 14.3 2.8 2 2 0.014 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CP013735_00032 - 730 0.087 12.3 2.7 1 2 0.0021 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP013735_00032 - 730 0.087 12.3 2.7 2 2 0.013 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 CP013735_00032 - 730 0.094 12.6 0.0 1 1 0.00019 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 CP013735_00032 - 730 0.095 13.0 4.5 1 2 0.00064 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP013735_00032 - 730 0.095 13.0 4.5 2 2 0.0016 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain PcfJ PF14284.6 144 CP013735_00033 - 462 0.00012 22.0 2.7 1 1 3.5e-08 0.00031 20.6 2.7 4 133 331 456 328 461 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP013735_00033 - 462 0.035 14.0 4.6 1 1 2.8e-05 0.25 11.3 4.6 37 125 311 444 210 452 0.79 Intein splicing domain Ribonuc_2-5A PF06479.12 127 CP013735_00034 - 105 0.022 14.9 1.5 1 1 3.3e-06 0.03 14.5 1.5 46 91 18 66 2 89 0.78 Ribonuclease 2-5A DUF5311 PF17238.2 194 CP013735_00034 - 105 0.053 13.4 0.0 1 1 6.9e-06 0.062 13.2 0.0 89 122 26 61 10 77 0.80 Family of unknown function (DUF5311) Phage_portal PF04860.12 314 CP014569_00001 - 353 3.7e-29 101.9 0.1 1 1 5.4e-33 4.8e-29 101.5 0.1 27 314 60 348 45 348 0.85 Phage portal protein DUF3770 PF12603.8 235 CP014569_00001 - 353 0.036 13.6 0.1 1 1 6.8e-06 0.061 12.8 0.1 70 141 148 219 135 238 0.83 Protein of unknown function (DUF3770) Terminase_6 PF03237.15 215 CP014569_00002 - 577 8.4e-17 61.6 0.0 1 1 8.1e-20 1.6e-16 60.6 0.0 2 213 181 375 180 377 0.92 Terminase-like family Terminase_6C PF17289.2 155 CP014569_00002 - 577 1.9e-07 31.3 0.0 1 1 2.3e-10 4.6e-07 30.1 0.0 25 154 431 562 396 563 0.85 Terminase RNaseH-like domain HTH_Tnp_1 PF01527.20 75 CP014569_00002 - 577 1.4e-06 28.5 0.2 1 1 2.1e-09 4.1e-06 27.0 0.2 6 70 19 80 13 85 0.78 Transposase HTH_3 PF01381.22 55 CP014569_00002 - 577 0.00044 20.2 0.0 1 4 1.7e-05 0.034 14.2 0.0 7 44 33 72 30 75 0.88 Helix-turn-helix HTH_3 PF01381.22 55 CP014569_00002 - 577 0.00044 20.2 0.0 2 4 0.86 1.7e+03 -0.9 0.0 12 23 77 88 73 90 0.82 Helix-turn-helix HTH_3 PF01381.22 55 CP014569_00002 - 577 0.00044 20.2 0.0 3 4 0.22 4.4e+02 1.0 0.0 24 37 121 135 120 138 0.76 Helix-turn-helix HTH_3 PF01381.22 55 CP014569_00002 - 577 0.00044 20.2 0.0 4 4 4.5 9e+03 -3.2 0.0 40 52 223 235 221 236 0.81 Helix-turn-helix HTH_28 PF13518.6 52 CP014569_00002 - 577 0.0027 17.8 0.0 1 1 3.2e-06 0.0064 16.6 0.0 1 34 24 57 24 64 0.94 Helix-turn-helix domain HTH_29 PF13551.6 63 CP014569_00002 - 577 0.0043 17.0 0.0 1 1 5.6e-06 0.011 15.7 0.0 4 40 28 63 27 69 0.89 Winged helix-turn helix HTH_7 PF02796.15 45 CP014569_00002 - 577 0.035 14.2 0.0 1 1 4.3e-05 0.086 12.9 0.0 12 38 26 52 19 55 0.88 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 50 CP014569_00002 - 577 0.061 13.1 0.0 1 1 0.00011 0.22 11.4 0.0 12 43 30 61 25 65 0.83 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 52 CP014569_00002 - 577 0.081 12.3 0.0 1 1 9.7e-05 0.19 11.1 0.0 12 48 20 56 19 60 0.89 Helix-turn-helix domain of transposase family ISL3 YajC PF02699.15 80 CP014569_00004 - 36 0.044 13.7 0.0 1 1 5e-06 0.045 13.6 0.0 5 31 7 33 2 36 0.77 Preprotein translocase subunit FeoB_associated PF12669.7 44 CP014569_00004 - 36 0.057 13.8 0.0 1 1 7.5e-06 0.068 13.6 0.0 2 27 5 30 4 32 0.89 FeoB-associated Cys-rich membrane protein Phage_Mu_F PF04233.14 112 CP014569_00007 - 408 1.2e-05 26.0 0.0 1 1 3.9e-09 3.5e-05 24.5 0.0 44 111 181 277 124 278 0.71 Phage Mu protein F like protein SieB PF14163.6 147 CP014569_00007 - 408 0.065 12.7 5.5 1 2 2.6e-06 0.023 14.2 2.0 55 132 8 86 5 98 0.87 Super-infection exclusion protein B SieB PF14163.6 147 CP014569_00007 - 408 0.065 12.7 5.5 2 2 0.18 1.6e+03 -1.5 0.1 58 79 319 340 310 358 0.76 Super-infection exclusion protein B Zn_Tnp_IS1595 PF12760.7 46 CP014569_00008 - 61 0.0013 18.7 1.5 1 1 2.9e-07 0.0017 18.3 1.5 20 46 2 34 1 34 0.85 Transposase zinc-ribbon domain Elf1 PF05129.13 78 CP014569_00008 - 61 0.0049 16.9 0.3 1 1 9.6e-07 0.0058 16.7 0.3 24 67 3 47 1 51 0.90 Transcription elongation factor Elf1 like Cys_rich_KTR PF14205.6 54 CP014569_00008 - 61 0.097 12.5 5.1 1 1 2.7e-05 0.16 11.8 5.1 5 36 2 34 1 55 0.68 Cysteine-rich KTR DUF1018 PF06252.12 119 CP014569_00009 - 145 0.02 15.8 0.1 1 1 2e-06 0.036 15.0 0.1 4 116 29 139 27 141 0.78 Protein of unknown function (DUF1018) OrfB_IS605 PF01385.19 120 CP014569_00012 - 366 1.2e-24 86.8 0.2 1 2 0.18 8.1e+02 0.2 2.7 57 96 53 91 27 107 0.73 Probable transposase OrfB_IS605 PF01385.19 120 CP014569_00012 - 366 1.2e-24 86.8 0.2 2 2 2.7e-28 1.2e-24 86.8 0.2 2 119 160 275 159 276 0.95 Probable transposase OrfB_Zn_ribbon PF07282.11 69 CP014569_00012 - 366 3.3e-18 65.4 1.3 1 2 3.3 1.5e+04 -4.0 0.1 3 11 99 107 99 108 0.84 Putative transposase DNA-binding domain OrfB_Zn_ribbon PF07282.11 69 CP014569_00012 - 366 3.3e-18 65.4 1.3 2 2 7.4e-22 3.3e-18 65.4 1.3 1 68 285 349 285 350 0.92 Putative transposase DNA-binding domain VPS28 PF03997.12 189 CP014569_00012 - 366 0.051 13.3 0.4 1 3 1.1e-05 0.051 13.3 0.4 144 187 46 92 12 93 0.77 VPS28 protein VPS28 PF03997.12 189 CP014569_00012 - 366 0.051 13.3 0.4 2 3 0.24 1.1e+03 -0.9 0.2 144 160 227 243 166 268 0.62 VPS28 protein VPS28 PF03997.12 189 CP014569_00012 - 366 0.051 13.3 0.4 3 3 0.064 2.9e+02 1.0 0.2 113 167 238 290 233 310 0.75 VPS28 protein HTH_OrfB_IS605 PF12323.8 47 CP014569_00012 - 366 0.072 12.6 0.2 1 1 4.5e-05 0.2 11.2 0.2 1 44 1 42 1 45 0.90 Helix-turn-helix domain Y1_Tnp PF01797.16 121 CP014569_00013 - 151 1.5e-38 131.6 0.0 1 1 1.3e-42 2.3e-38 131.0 0.0 1 121 13 130 13 130 0.98 Transposase IS200 like DUF1353 PF07087.11 91 CP014569_00014 - 117 1.3e-18 66.4 0.0 1 1 8.9e-23 1.6e-18 66.2 0.0 4 91 21 107 18 107 0.91 Protein of unknown function (DUF1353) ExsD PF16806.5 238 CP014569_00015 - 356 0.0064 16.4 1.8 1 1 2.7e-06 0.0096 15.9 1.8 93 192 48 146 27 166 0.82 Antiactivator protein ExsD CBM_X2 PF03442.14 83 CP014569_00015 - 356 0.032 14.3 1.5 1 2 0.00013 0.47 10.6 0.3 14 61 113 160 108 166 0.91 Carbohydrate binding domain X2 CBM_X2 PF03442.14 83 CP014569_00015 - 356 0.032 14.3 1.5 2 2 0.064 2.3e+02 2.0 0.0 32 54 226 248 213 260 0.79 Carbohydrate binding domain X2 YlqD PF11068.8 131 CP014569_00015 - 356 0.052 13.9 4.1 1 1 2.4e-05 0.084 13.2 4.1 17 83 43 117 27 140 0.82 YlqD protein HSBP1 PF06825.12 51 CP014569_00015 - 356 0.065 13.1 0.4 1 2 0.00037 1.3 8.9 0.1 13 42 56 88 55 92 0.83 Heat shock factor binding protein 1 HSBP1 PF06825.12 51 CP014569_00015 - 356 0.065 13.1 0.4 2 2 0.097 3.5e+02 1.2 0.0 28 40 127 139 104 142 0.78 Heat shock factor binding protein 1 Spc7 PF08317.11 310 CP014569_00015 - 356 0.098 11.5 10.1 1 1 3.9e-05 0.14 11.0 10.1 140 239 39 138 31 160 0.79 Spc7 kinetochore protein Phage_holin_3_3 PF16083.5 78 CP014569_00018 - 116 1.2e-10 41.3 4.9 1 1 9.1e-15 1.6e-10 40.9 4.9 3 74 18 93 17 97 0.93 LydA holin phage, holin superfamily III PG_binding_3 PF09374.10 76 CP014569_00019 - 184 2.5e-11 43.7 0.0 1 1 4.3e-15 3.9e-11 43.1 0.0 4 75 118 181 115 182 0.94 Predicted Peptidoglycan domain Glyco_hydro_108 PF05838.12 85 CP014569_00019 - 184 5e-08 33.3 0.1 1 1 1e-11 9.4e-08 32.4 0.1 20 85 31 112 22 112 0.90 Glycosyl hydrolase 108 MethyltransfD12 PF02086.15 260 CP014569_00020 - 253 1.3e-28 100.4 4.0 1 1 2.5e-32 2.2e-28 99.7 4.0 1 259 12 236 12 237 0.80 D12 class N6 adenine-specific DNA methyltransferase Zea_mays_MuDR PF05928.11 207 CP014569_00020 - 253 0.055 13.1 0.1 1 1 9.6e-06 0.086 12.5 0.1 163 196 212 245 204 252 0.89 Zea mays MURB-like protein (MuDR) HTH_26 PF13443.6 63 CP014569_00021 - 156 0.0001 22.7 0.1 1 3 0.15 3.9e+02 1.6 0.0 10 31 4 25 2 31 0.86 Cro/C1-type HTH DNA-binding domain HTH_26 PF13443.6 63 CP014569_00021 - 156 0.0001 22.7 0.1 2 3 0.00026 0.66 10.4 0.0 15 40 63 88 61 105 0.86 Cro/C1-type HTH DNA-binding domain HTH_26 PF13443.6 63 CP014569_00021 - 156 0.0001 22.7 0.1 3 3 0.0029 7.4 7.1 0.1 3 46 102 142 100 147 0.78 Cro/C1-type HTH DNA-binding domain HTH_28 PF13518.6 52 CP014569_00021 - 156 0.0042 17.2 0.0 1 3 0.11 2.7e+02 1.8 0.0 18 34 10 26 3 27 0.85 Helix-turn-helix domain HTH_28 PF13518.6 52 CP014569_00021 - 156 0.0042 17.2 0.0 2 3 0.0006 1.5 9.0 0.0 18 34 64 80 62 81 0.82 Helix-turn-helix domain HTH_28 PF13518.6 52 CP014569_00021 - 156 0.0042 17.2 0.0 3 3 0.074 1.9e+02 2.3 0.0 16 34 112 132 98 137 0.75 Helix-turn-helix domain HTH_3 PF01381.22 55 CP014569_00021 - 156 0.013 15.6 1.7 1 4 0.017 43 4.3 0.0 8 31 3 26 3 32 0.89 Helix-turn-helix HTH_3 PF01381.22 55 CP014569_00021 - 156 0.013 15.6 1.7 2 4 0.0026 6.7 6.8 0.0 18 34 67 83 62 86 0.90 Helix-turn-helix HTH_3 PF01381.22 55 CP014569_00021 - 156 0.013 15.6 1.7 3 4 0.13 3.3e+02 1.4 0.0 13 29 114 130 105 146 0.79 Helix-turn-helix HTH_3 PF01381.22 55 CP014569_00021 - 156 0.013 15.6 1.7 4 4 1.5 3.9e+03 -2.0 0.0 8 16 144 152 139 153 0.72 Helix-turn-helix Phage_terminase PF10668.9 60 CP014569_00021 - 156 0.015 15.3 0.5 1 3 0.0062 16 5.6 0.0 23 48 5 30 2 37 0.84 Phage terminase small subunit Phage_terminase PF10668.9 60 CP014569_00021 - 156 0.015 15.3 0.5 2 3 0.21 5.4e+02 0.7 0.0 26 43 62 79 58 88 0.84 Phage terminase small subunit Phage_terminase PF10668.9 60 CP014569_00021 - 156 0.015 15.3 0.5 3 3 0.0073 19 5.4 0.2 22 44 110 132 97 141 0.85 Phage terminase small subunit DUF4004 PF13171.6 197 CP014569_00021 - 156 0.021 15.1 3.4 1 3 0.0039 10 6.3 0.2 5 25 7 27 3 32 0.90 Protein of unknown function (DUF4004) DUF4004 PF13171.6 197 CP014569_00021 - 156 0.021 15.1 3.4 2 3 0.0036 9.3 6.4 0.0 6 24 62 80 59 90 0.87 Protein of unknown function (DUF4004) DUF4004 PF13171.6 197 CP014569_00021 - 156 0.021 15.1 3.4 3 3 0.12 3.1e+02 1.4 0.2 3 24 111 132 109 135 0.89 Protein of unknown function (DUF4004) DUF2862 PF11061.8 61 CP014569_00021 - 156 0.053 13.4 0.1 1 2 0.0038 9.8 6.1 0.0 14 39 5 30 2 45 0.83 Protein of unknown function (DUF2862) DUF2862 PF11061.8 61 CP014569_00021 - 156 0.053 13.4 0.1 2 2 0.01 27 4.7 0.0 9 34 106 131 100 138 0.90 Protein of unknown function (DUF2862) HTH_23 PF13384.6 50 CP014569_00021 - 156 0.062 13.1 0.0 1 3 0.066 1.7e+02 2.2 0.0 17 39 4 26 1 29 0.88 Homeodomain-like domain HTH_23 PF13384.6 50 CP014569_00021 - 156 0.062 13.1 0.0 2 3 0.0094 24 4.9 0.0 21 39 62 80 59 84 0.87 Homeodomain-like domain HTH_23 PF13384.6 50 CP014569_00021 - 156 0.062 13.1 0.0 3 3 0.078 2e+02 2.0 0.0 19 39 112 132 99 138 0.83 Homeodomain-like domain DUF2569 PF10754.9 143 CP014569_00024 - 128 0.026 15.0 0.4 1 1 4.6e-06 0.042 14.3 0.4 11 98 7 95 5 121 0.70 Protein of unknown function (DUF2569) PMT_4TMC PF16192.5 199 CP014569_00024 - 128 0.06 12.9 0.3 1 1 9.2e-06 0.083 12.5 0.3 128 181 50 103 46 119 0.87 C-terminal four TMM region of protein-O-mannosyltransferase SHE3 PF17078.5 228 CP014569_00025 - 108 0.0065 16.2 10.7 1 1 2.2e-06 0.0078 16.0 10.7 153 221 35 103 26 107 0.88 SWI5-dependent HO expression protein 3 F420_oxidored PF03807.17 97 CP014569_00025 - 108 0.009 16.6 0.5 1 1 3e-06 0.011 16.3 0.5 16 82 40 105 27 108 0.84 NADP oxidoreductase coenzyme F420-dependent SKIP_SNW PF02731.15 160 CP014569_00025 - 108 0.031 13.9 2.1 1 1 1.2e-05 0.042 13.5 2.1 81 151 15 84 13 88 0.93 SKIP/SNW domain EutB PF06751.11 435 CP014569_00025 - 108 0.037 12.8 0.6 1 1 1.1e-05 0.039 12.8 0.6 70 137 34 101 9 107 0.82 Ethanolamine ammonia lyase large subunit (EutB) FB_lectin PF07367.11 140 CP014569_00025 - 108 0.072 13.0 0.3 1 1 2.6e-05 0.094 12.7 0.3 73 136 19 82 9 85 0.83 Fungal fruit body lectin COX8 PF02285.15 43 CP014569_00027 - 246 0.016 15.1 0.0 1 1 2e-06 0.036 13.9 0.0 4 39 85 120 82 120 0.91 Cytochrome oxidase c subunit VIII O-antigen_lig PF13425.6 468 CP014569_00028 - 195 0.0041 16.0 3.8 1 1 1e-06 0.0059 15.4 3.8 240 346 10 157 3 168 0.65 O-antigen ligase like membrane protein Insulin_TMD PF17870.1 47 CP014569_00028 - 195 0.035 14.2 1.3 1 2 5.9e-06 0.035 14.2 1.3 9 31 12 34 6 37 0.83 Insulin receptor trans-membrane segment Insulin_TMD PF17870.1 47 CP014569_00028 - 195 0.035 14.2 1.3 2 2 1.5 9.1e+03 -3.2 0.0 9 18 114 123 111 123 0.79 Insulin receptor trans-membrane segment TMEM51 PF15345.6 238 CP014569_00028 - 195 0.079 12.8 0.1 1 1 2.1e-05 0.13 12.1 0.1 62 127 17 81 5 130 0.73 Transmembrane protein 51 RRXRR PF14239.6 174 CP014569_00031 - 439 1.5e-55 187.8 5.1 1 1 4.5e-59 2e-55 187.3 5.1 1 174 2 177 2 177 0.98 RRXRR protein HNH_5 PF14279.6 56 CP014569_00031 - 439 4e-12 45.8 1.5 1 1 1.6e-15 7.1e-12 45.0 1.5 1 44 196 235 196 245 0.89 HNH endonuclease HNH PF01844.23 47 CP014569_00031 - 439 4.7e-09 36.3 3.1 1 1 2e-12 9e-09 35.4 3.1 1 44 196 234 196 236 0.93 HNH endonuclease HNH_4 PF13395.6 55 CP014569_00031 - 439 8.2e-09 35.2 0.1 1 1 5.3e-12 2.4e-08 33.8 0.1 16 50 201 235 186 238 0.82 HNH endonuclease HdeA PF06411.11 92 CP014569_00035 - 143 0.057 13.6 0.2 1 1 4.8e-06 0.087 13.0 0.2 13 75 24 86 20 92 0.78 HdeA/HdeB family Chlorosome_CsmC PF11098.8 139 CP014569_00038 - 161 0.0041 17.1 0.0 1 1 2e-06 0.0052 16.8 0.0 70 118 34 82 25 118 0.91 Chlorosome envelope protein C Tup_N PF08581.10 77 CP014569_00038 - 161 0.017 15.4 1.7 1 2 6.5e-06 0.017 15.4 1.7 28 61 22 55 11 66 0.89 Tup N-terminal Tup_N PF08581.10 77 CP014569_00038 - 161 0.017 15.4 1.7 2 2 0.46 1.2e+03 -0.1 4.6 27 67 90 98 58 124 0.47 Tup N-terminal CBP_BcsR PF10945.8 42 CP014569_00038 - 161 0.031 13.7 0.3 1 1 2.6e-05 0.067 12.7 0.3 2 27 32 57 31 58 0.93 Cellulose biosynthesis protein BcsR Spectrin_like PF18373.1 78 CP014569_00038 - 161 0.033 14.3 3.6 1 3 0.12 3.1e+02 1.5 0.0 25 42 13 30 10 37 0.82 Spectrin like domain Spectrin_like PF18373.1 78 CP014569_00038 - 161 0.033 14.3 3.6 2 3 8.9e-05 0.23 11.6 0.3 31 49 40 58 36 84 0.86 Spectrin like domain Spectrin_like PF18373.1 78 CP014569_00038 - 161 0.033 14.3 3.6 3 3 0.29 7.4e+02 0.3 0.1 26 36 90 100 61 115 0.69 Spectrin like domain APG6_N PF17675.1 133 CP014569_00038 - 161 0.042 14.4 6.1 1 2 0.00011 0.28 11.7 0.6 52 115 3 66 1 84 0.90 Apg6 coiled-coil region APG6_N PF17675.1 133 CP014569_00038 - 161 0.042 14.4 6.1 2 2 0.0073 19 5.8 0.7 19 59 84 119 78 124 0.83 Apg6 coiled-coil region TMPIT PF07851.13 324 CP014569_00038 - 161 0.059 12.6 6.3 1 2 3.8e-05 0.097 11.9 2.1 27 88 16 77 1 86 0.83 TMPIT-like protein TMPIT PF07851.13 324 CP014569_00038 - 161 0.059 12.6 6.3 2 2 0.016 41 3.3 0.2 49 102 93 143 77 153 0.68 TMPIT-like protein DUF948 PF06103.11 89 CP014569_00038 - 161 0.099 12.9 2.4 1 2 9.8e-05 0.25 11.6 0.5 18 79 18 76 15 85 0.85 Bacterial protein of unknown function (DUF948) DUF948 PF06103.11 89 CP014569_00038 - 161 0.099 12.9 2.4 2 2 0.012 30 4.9 0.3 21 75 64 117 63 125 0.84 Bacterial protein of unknown function (DUF948) SLT PF01464.20 117 CP014569_00040 - 184 8.9e-12 44.7 0.0 1 1 1.6e-15 1.4e-11 44.0 0.0 2 101 26 166 25 178 0.92 Transglycosylase SLT domain Leukocidin PF07968.12 255 CP014569_00040 - 184 0.00012 22.1 0.2 1 1 2.2e-08 0.0002 21.3 0.2 165 232 26 89 16 111 0.77 Leukocidin/Hemolysin toxin family DUF226 PF02890.14 139 CP014569_00042 - 620 0.017 15.1 0.9 1 3 0.16 2.9e+03 -1.8 0.1 81 106 13 38 5 48 0.63 Borrelia family of unknown function DUF226 DUF226 PF02890.14 139 CP014569_00042 - 620 0.017 15.1 0.9 2 3 9.4e-07 0.017 15.1 0.9 13 126 62 180 56 188 0.76 Borrelia family of unknown function DUF226 DUF226 PF02890.14 139 CP014569_00042 - 620 0.017 15.1 0.9 3 3 0.15 2.6e+03 -1.7 0.6 16 39 249 272 237 314 0.60 Borrelia family of unknown function DUF226 Y1_Tnp PF01797.16 121 CP014569_00043 - 151 1.5e-38 131.6 0.0 1 1 1.3e-42 2.3e-38 131.0 0.0 1 121 13 130 13 130 0.98 Transposase IS200 like OrfB_IS605 PF01385.19 120 CP014569_00044 - 366 1.2e-24 86.8 0.2 1 2 0.18 8.1e+02 0.2 2.7 57 96 53 91 27 107 0.73 Probable transposase OrfB_IS605 PF01385.19 120 CP014569_00044 - 366 1.2e-24 86.8 0.2 2 2 2.7e-28 1.2e-24 86.8 0.2 2 119 160 275 159 276 0.95 Probable transposase OrfB_Zn_ribbon PF07282.11 69 CP014569_00044 - 366 3.3e-18 65.4 1.3 1 2 3.3 1.5e+04 -4.0 0.1 3 11 99 107 99 108 0.84 Putative transposase DNA-binding domain OrfB_Zn_ribbon PF07282.11 69 CP014569_00044 - 366 3.3e-18 65.4 1.3 2 2 7.4e-22 3.3e-18 65.4 1.3 1 68 285 349 285 350 0.92 Putative transposase DNA-binding domain VPS28 PF03997.12 189 CP014569_00044 - 366 0.051 13.3 0.4 1 3 1.1e-05 0.051 13.3 0.4 144 187 46 92 12 93 0.77 VPS28 protein VPS28 PF03997.12 189 CP014569_00044 - 366 0.051 13.3 0.4 2 3 0.24 1.1e+03 -0.9 0.2 144 160 227 243 166 268 0.62 VPS28 protein VPS28 PF03997.12 189 CP014569_00044 - 366 0.051 13.3 0.4 3 3 0.064 2.9e+02 1.0 0.2 113 167 238 290 233 310 0.75 VPS28 protein HTH_OrfB_IS605 PF12323.8 47 CP014569_00044 - 366 0.073 12.6 0.2 1 1 4.5e-05 0.2 11.2 0.2 1 44 1 42 1 45 0.90 Helix-turn-helix domain CshA_NR2 PF18651.1 330 CP014569_00046 - 297 0.099 11.8 0.2 1 2 0.094 1.7e+03 -2.1 0.1 43 87 39 81 35 111 0.60 Surface adhesin CshA non-repetitive domain 2 CshA_NR2 PF18651.1 330 CP014569_00046 - 297 0.099 11.8 0.2 2 2 1.4e-05 0.24 10.5 0.0 235 284 174 226 162 233 0.82 Surface adhesin CshA non-repetitive domain 2 DUF2357 PF09823.9 251 CP014569_00049 - 251 0.098 11.9 0.0 1 1 6.9e-06 0.12 11.6 0.0 113 186 45 117 9 153 0.73 Domain of unknown function (DUF2357) DUF4214 PF13946.6 72 CP014569_00051 - 1765 0.0004 20.4 4.0 1 4 0.29 5.1e+03 -2.4 0.0 7 22 705 719 701 725 0.78 Domain of unknown function (DUF4214) DUF4214 PF13946.6 72 CP014569_00051 - 1765 0.0004 20.4 4.0 2 4 0.61 1.1e+04 -3.4 0.0 20 31 1268 1279 1257 1281 0.59 Domain of unknown function (DUF4214) DUF4214 PF13946.6 72 CP014569_00051 - 1765 0.0004 20.4 4.0 3 4 2.4e-08 0.00042 20.3 0.1 24 57 1611 1644 1592 1651 0.86 Domain of unknown function (DUF4214) DUF4214 PF13946.6 72 CP014569_00051 - 1765 0.0004 20.4 4.0 4 4 0.36 6.5e+03 -2.7 0.1 46 64 1721 1739 1720 1744 0.84 Domain of unknown function (DUF4214) DUF3784 PF12650.7 94 CP014569_00052 - 64 0.0045 17.2 0.7 1 1 8.1e-07 0.0048 17.1 0.7 45 89 10 54 3 59 0.90 Domain of unknown function (DUF3784) TMCCDC2 PF15844.5 171 CP014569_00052 - 64 0.021 14.7 0.7 1 1 3.6e-06 0.021 14.7 0.7 44 85 12 54 4 64 0.78 Transmembrane and coiled-coil domain-containing protein 2 DUF1240 PF06836.12 95 CP014569_00052 - 64 0.052 14.1 1.8 1 2 0.099 5.9e+02 1.1 0.2 44 64 16 36 3 38 0.46 Protein of unknown function (DUF1240) DUF1240 PF06836.12 95 CP014569_00052 - 64 0.052 14.1 1.8 2 2 2.2e-05 0.13 12.8 1.8 47 74 34 61 11 63 0.86 Protein of unknown function (DUF1240) DUF2321 PF10083.9 156 CP014569_00053 - 71 0.05 13.2 0.1 1 1 2.9e-06 0.053 13.2 0.1 64 94 40 70 24 71 0.83 Uncharacterized protein conserved in bacteria (DUF2321) Phage_cap_P2 PF05125.12 326 CP014569_00058 - 311 9.9e-08 31.3 2.5 1 1 2.2e-10 2e-06 27.0 2.5 15 210 15 198 4 290 0.69 Phage major capsid protein, P2 family Tctex-1 PF03645.13 103 CP014569_00058 - 311 0.014 15.7 1.3 1 2 1.5e-05 0.14 12.4 0.0 31 100 64 131 11 133 0.80 Tctex-1 family Tctex-1 PF03645.13 103 CP014569_00058 - 311 0.014 15.7 1.3 2 2 0.079 7e+02 0.5 0.2 21 43 165 187 144 206 0.76 Tctex-1 family Peptidase_S78_2 PF14550.6 120 CP014569_00059 - 245 7.4e-34 116.4 0.1 1 1 2e-37 1.2e-33 115.8 0.1 3 119 40 156 38 157 0.92 Putative phage serine protease XkdF Holin_BhlA PF10960.8 70 CP014569_00059 - 245 0.026 14.5 1.7 1 1 1e-05 0.061 13.3 1.7 33 70 183 223 172 223 0.82 BhlA holin family Abi_C PF14355.6 83 CP014569_00059 - 245 0.059 13.5 0.7 1 3 0.34 2e+03 -1.0 0.0 13 43 57 86 54 87 0.78 Abortive infection C-terminus Abi_C PF14355.6 83 CP014569_00059 - 245 0.059 13.5 0.7 2 3 0.0021 13 6.0 0.0 9 43 145 177 138 181 0.81 Abortive infection C-terminus Abi_C PF14355.6 83 CP014569_00059 - 245 0.059 13.5 0.7 3 3 0.0084 50 4.1 0.1 22 45 188 211 178 224 0.86 Abortive infection C-terminus Relaxase PF03432.14 242 CP020480_00002 - 554 4.2e-07 29.8 1.0 1 3 0.07 1.3e+03 -1.2 0.8 125 176 57 91 37 129 0.48 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP020480_00002 - 554 4.2e-07 29.8 1.0 2 3 2.4e-11 4.2e-07 29.8 1.0 32 170 141 269 108 286 0.79 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP020480_00002 - 554 4.2e-07 29.8 1.0 3 3 0.03 5.4e+02 0.0 0.9 131 164 415 452 360 487 0.73 Relaxase/Mobilisation nuclease domain DUF1673 PF07895.11 230 CP020480_00003 - 151 0.0051 16.5 3.4 1 2 1.4e-06 0.0051 16.5 3.4 152 227 18 93 1 94 0.74 Protein of unknown function (DUF1673) DUF1673 PF07895.11 230 CP020480_00003 - 151 0.0051 16.5 3.4 2 2 0.014 49 3.5 2.4 156 212 92 147 88 149 0.58 Protein of unknown function (DUF1673) DUF782 PF05614.11 104 CP020480_00003 - 151 0.0068 16.8 0.1 1 1 3.1e-06 0.011 16.1 0.1 8 38 16 46 13 83 0.77 Circovirus protein of unknown function (DUF782) MCU PF04678.13 176 CP020480_00003 - 151 0.047 13.8 0.3 1 1 2e-05 0.07 13.2 0.3 86 145 47 107 37 124 0.83 Mitochondrial calcium uniporter Acyl_transf_3 PF01757.22 340 CP020480_00003 - 151 0.074 12.1 5.8 1 1 4.5e-05 0.16 11.0 6.0 209 329 6 133 4 142 0.70 Acyltransferase family Adeno_terminal PF02459.15 557 CP020480_00003 - 151 0.097 11.0 0.5 1 1 3e-05 0.11 10.9 0.5 164 229 68 134 44 148 0.84 Adenoviral DNA terminal protein AAA_31 PF13614.6 177 CP020480_00008 - 219 1.9e-11 44.2 4.9 1 2 3.4e-14 6.7e-11 42.4 2.8 2 74 2 85 1 158 0.71 AAA domain AAA_31 PF13614.6 177 CP020480_00008 - 219 1.9e-11 44.2 4.9 2 2 0.28 5.5e+02 0.3 0.6 107 121 143 157 114 217 0.60 AAA domain MipZ PF09140.11 262 CP020480_00008 - 219 2.6e-11 43.3 1.7 1 2 1.6e-09 3.3e-06 26.6 1.0 2 145 3 133 2 164 0.72 ATPase MipZ MipZ PF09140.11 262 CP020480_00008 - 219 2.6e-11 43.3 1.7 2 2 0.0029 5.8 6.1 0.0 213 258 174 214 132 217 0.88 ATPase MipZ CbiA PF01656.23 128 CP020480_00008 - 219 4.3e-09 36.5 0.1 1 1 3.2e-12 6.4e-09 35.9 0.1 5 110 8 171 4 190 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 305 CP020480_00008 - 219 0.00014 21.2 0.4 1 2 4.1e-07 0.00081 18.7 0.0 8 46 9 47 1 75 0.87 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 CP020480_00008 - 219 0.00014 21.2 0.4 2 2 0.19 3.8e+02 0.0 0.5 139 180 117 158 110 214 0.61 Anion-transporting ATPase VirC1 PF07015.11 231 CP020480_00008 - 219 0.0011 18.3 0.1 1 2 0.00087 1.7 7.9 0.0 1 40 1 40 1 58 0.86 VirC1 protein VirC1 PF07015.11 231 CP020480_00008 - 219 0.0011 18.3 0.1 2 2 0.00043 0.85 8.9 0.0 87 152 83 149 67 214 0.75 VirC1 protein ABC2_membrane_3 PF12698.7 345 CP020480_00008 - 219 0.0019 17.4 0.9 1 1 1.1e-06 0.0021 17.2 0.9 21 128 19 138 13 213 0.62 ABC-2 family transporter protein AAA_24 PF13479.6 197 CP020480_00008 - 219 0.0035 17.1 1.2 1 2 3.1e-06 0.0061 16.3 0.1 11 73 11 87 9 91 0.75 AAA domain AAA_24 PF13479.6 197 CP020480_00008 - 219 0.0035 17.1 1.2 2 2 1.1 2.2e+03 -1.9 0.1 31 58 185 213 158 217 0.62 AAA domain ParA PF10609.9 246 CP020480_00008 - 219 0.004 16.7 0.0 1 1 3.6e-06 0.0072 15.8 0.0 6 41 4 39 1 58 0.85 NUBPL iron-transfer P-loop NTPase ATP_bind_1 PF03029.17 241 CP020480_00008 - 219 0.019 14.8 0.1 1 2 3.4e-05 0.068 13.0 0.0 6 34 12 40 10 49 0.91 Conserved hypothetical ATP binding protein ATP_bind_1 PF03029.17 241 CP020480_00008 - 219 0.019 14.8 0.1 2 2 0.68 1.4e+03 -1.1 0.0 197 197 90 90 41 153 0.53 Conserved hypothetical ATP binding protein Fic PF02661.18 97 CP020480_00009 - 234 3.2e-15 56.8 0.1 1 1 8.1e-19 7.3e-15 55.6 0.1 2 96 53 157 52 158 0.78 Fic/DOC family IL22 PF14565.6 139 CP020480_00009 - 234 0.018 15.3 0.9 1 3 0.0073 66 3.8 0.0 9 72 5 77 2 93 0.70 Interleukin 22 IL-10-related T-cell-derived-inducible factor IL22 PF14565.6 139 CP020480_00009 - 234 0.018 15.3 0.9 2 3 0.00017 1.5 9.1 0.0 54 103 104 153 100 174 0.90 Interleukin 22 IL-10-related T-cell-derived-inducible factor IL22 PF14565.6 139 CP020480_00009 - 234 0.018 15.3 0.9 3 3 0.13 1.2e+03 -0.3 0.1 100 115 203 218 150 232 0.59 Interleukin 22 IL-10-related T-cell-derived-inducible factor CRISPR_Cas2 PF09827.9 76 CP020480_00011 - 140 0.00069 19.8 1.5 1 2 3.7e-07 0.0022 18.1 0.0 5 54 7 67 3 83 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP020480_00011 - 140 0.00069 19.8 1.5 2 2 0.15 8.8e+02 0.2 0.3 41 54 111 124 79 136 0.66 CRISPR associated protein Cas2 RRM_1 PF00076.22 70 CP020480_00011 - 140 0.0021 17.8 0.5 1 2 1.4e-06 0.0083 15.9 0.1 6 62 7 68 5 70 0.89 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_1 PF00076.22 70 CP020480_00011 - 140 0.0021 17.8 0.5 2 2 0.22 1.3e+03 -0.7 0.0 4 18 104 118 104 132 0.80 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LPD11 PF18824.1 69 CP020480_00011 - 140 0.085 12.9 1.8 1 3 0.34 2e+03 -1.1 0.0 28 50 10 32 2 33 0.77 Large polyvalent protein-associated domain 11 LPD11 PF18824.1 69 CP020480_00011 - 140 0.085 12.9 1.8 2 3 0.84 5e+03 -2.3 0.0 61 67 57 63 48 74 0.54 Large polyvalent protein-associated domain 11 LPD11 PF18824.1 69 CP020480_00011 - 140 0.085 12.9 1.8 3 3 2.9e-05 0.17 12.0 0.4 25 55 102 132 86 137 0.88 Large polyvalent protein-associated domain 11 YopX PF09643.10 131 CP020480_00013 - 281 1.4e-08 34.8 0.5 1 2 0.056 1e+03 -0.3 0.2 20 77 57 120 39 142 0.58 YopX protein YopX PF09643.10 131 CP020480_00013 - 281 1.4e-08 34.8 0.5 2 2 8e-13 1.4e-08 34.8 0.5 47 130 159 235 116 236 0.79 YopX protein Topoisom_bac PF01131.20 413 CP020480_00014 - 723 3.8e-97 325.9 2.9 1 1 1.9e-100 4.8e-97 325.6 2.9 3 413 154 591 152 591 0.93 DNA topoisomerase Toprim PF01751.22 103 CP020480_00014 - 723 6.8e-12 45.5 0.3 1 2 1.3e-14 3.4e-11 43.3 0.1 1 101 2 134 2 136 0.86 Toprim domain Toprim PF01751.22 103 CP020480_00014 - 723 6.8e-12 45.5 0.3 2 2 2.1 5.4e+03 -2.3 0.0 61 77 497 513 457 516 0.65 Toprim domain zf-C4_Topoisom PF01396.19 39 CP020480_00014 - 723 2.3e-07 30.5 20.4 1 2 3.9e-07 0.001 18.8 4.6 2 32 619 651 618 657 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP020480_00014 - 723 2.3e-07 30.5 20.4 2 2 1.3e-06 0.0034 17.1 7.9 3 37 674 713 672 715 0.85 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP020480_00014 - 723 0.00043 20.5 0.2 1 2 0.0015 3.9 7.8 0.0 18 34 615 631 610 632 0.78 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP020480_00014 - 723 0.00043 20.5 0.2 2 2 0.00027 0.69 10.2 0.0 20 32 671 683 661 685 0.78 zinc-ribbon Zn_ribbon_SprT PF17283.2 38 CP020480_00014 - 723 0.014 15.2 1.1 1 2 0.18 4.6e+02 0.8 0.1 7 13 621 627 614 632 0.64 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 CP020480_00014 - 723 0.014 15.2 1.1 2 2 4.4e-05 0.11 12.4 0.2 4 27 672 699 669 704 0.93 SprT-like zinc ribbon domain Toprim_2 PF13155.6 90 CP020480_00014 - 723 0.034 14.6 0.2 1 2 0.00027 0.68 10.4 0.1 37 75 91 131 83 154 0.80 Toprim-like Toprim_2 PF13155.6 90 CP020480_00014 - 723 0.034 14.6 0.2 2 2 0.2 5.1e+02 1.2 0.0 33 58 488 513 465 516 0.78 Toprim-like Zn-ribbon_8 PF09723.10 40 CP020480_00014 - 723 0.082 13.0 0.7 1 2 0.014 35 4.6 0.0 18 34 609 626 603 632 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP020480_00014 - 723 0.082 13.0 0.7 2 2 0.0045 11 6.2 0.1 5 21 672 688 665 693 0.77 Zinc ribbon domain Latarcin PF10279.9 81 CP020480_00016 - 296 0.016 15.6 1.6 1 1 0.00011 0.66 10.4 1.6 22 76 56 184 14 189 0.78 Latarcin precursor Lipase_GDSL PF00657.22 200 CP020480_00016 - 296 0.033 14.2 1.1 1 1 1.1e-05 0.067 13.2 0.9 48 131 27 170 15 219 0.75 GDSL-like Lipase/Acylhydrolase T3SS_basalb_I PF17001.5 96 CP020480_00016 - 296 0.078 13.6 4.2 1 2 0.00029 1.7 9.3 0.5 3 62 20 91 18 107 0.70 Type III secretion basal body protein I, YscI, HrpB, PscI T3SS_basalb_I PF17001.5 96 CP020480_00016 - 296 0.078 13.6 4.2 2 2 0.0073 44 4.8 0.1 2 43 158 208 157 219 0.55 Type III secretion basal body protein I, YscI, HrpB, PscI TrbM PF07424.11 156 CP020480_00017 - 197 3.4e-39 134.3 1.4 1 1 2.4e-43 4.3e-39 133.9 1.4 2 148 23 181 22 190 0.87 TrbM Cag12 PF13117.6 97 CP020480_00018 - 136 1.1e-16 61.2 0.1 1 1 1.6e-20 1.4e-16 60.7 0.1 6 94 29 115 25 118 0.92 Cag pathogenicity island protein Cag12 LPAM_2 PF13627.6 23 CP020480_00018 - 136 0.027 14.3 3.2 1 1 4.9e-06 0.044 13.6 3.2 2 19 7 24 6 24 0.90 Prokaryotic lipoprotein-attachment site T4SS-DNA_transf PF02534.14 469 CP020480_00019 - 606 1.1e-109 367.3 0.1 1 1 2.6e-113 1.5e-109 366.9 0.1 2 461 93 572 82 578 0.86 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP020480_00019 - 606 6.2e-27 94.1 0.0 1 1 1.8e-30 1.1e-26 93.3 0.0 2 125 414 535 413 536 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP020480_00019 - 606 1.4e-18 67.0 0.0 1 2 1e-06 0.0061 15.5 0.0 44 127 158 253 136 272 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP020480_00019 - 606 1.4e-18 67.0 0.0 2 2 5.5e-17 3.3e-13 49.3 0.0 158 369 322 538 301 550 0.78 Type IV secretion-system coupling protein DNA-binding domain Njmu-R1 PF15053.6 353 CP020480_00021 - 234 0.0055 15.9 1.7 1 1 4.5e-07 0.0081 15.3 1.7 121 227 3 109 1 140 0.77 Mjmu-R1-like protein family T2SSE PF00437.20 273 CP020480_00022 - 329 5.1e-54 183.2 0.0 1 1 1.1e-56 6.4e-54 182.8 0.0 6 269 14 311 9 314 0.94 Type II/IV secretion system protein AAA_22 PF13401.6 137 CP020480_00022 - 329 4.9e-05 23.6 0.0 1 1 1.6e-07 9.4e-05 22.7 0.0 7 57 162 222 159 251 0.82 AAA domain ABC_tran PF00005.27 137 CP020480_00022 - 329 0.00012 22.6 0.0 1 1 5e-07 0.00029 21.4 0.0 8 51 157 201 150 229 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP020480_00022 - 329 0.00021 20.7 0.0 1 1 5.9e-07 0.00034 20.0 0.0 28 60 146 181 125 183 0.79 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP020480_00022 - 329 0.00062 19.3 0.0 1 1 1.8e-06 0.0011 18.6 0.0 19 58 146 185 130 196 0.85 P-loop containing dynein motor region AAA_23 PF13476.6 200 CP020480_00022 - 329 0.0028 18.2 1.3 1 2 3.9 2.3e+03 -1.1 0.2 154 156 124 126 42 151 0.51 AAA domain AAA_23 PF13476.6 200 CP020480_00022 - 329 0.0028 18.2 1.3 2 2 4.9e-06 0.0028 18.2 1.3 5 38 147 179 145 182 0.84 AAA domain TsaE PF02367.17 125 CP020480_00022 - 329 0.003 17.5 0.0 1 1 1.1e-05 0.0064 16.5 0.0 11 45 150 186 142 194 0.77 Threonylcarbamoyl adenosine biosynthesis protein TsaE Pox_A32 PF04665.12 242 CP020480_00022 - 329 0.003 17.0 0.0 1 1 8.4e-06 0.0048 16.4 0.0 15 36 162 183 145 209 0.85 Poxvirus A32 protein AAA_15 PF13175.6 369 CP020480_00022 - 329 0.0035 17.1 2.5 1 2 0.2 1.1e+02 2.3 1.2 184 217 74 139 2 147 0.50 AAA ATPase domain AAA_15 PF13175.6 369 CP020480_00022 - 329 0.0035 17.1 2.5 2 2 6.1e-06 0.0035 17.1 2.5 9 54 147 191 145 224 0.78 AAA ATPase domain AAA_24 PF13479.6 197 CP020480_00022 - 329 0.0041 16.9 0.0 1 1 1.2e-05 0.0069 16.1 0.0 3 32 161 187 160 229 0.74 AAA domain Septin PF00735.18 281 CP020480_00022 - 329 0.0043 16.4 0.0 1 1 1.2e-05 0.0072 15.6 0.0 5 33 161 189 157 209 0.78 Septin RNA_helicase PF00910.22 107 CP020480_00022 - 329 0.012 16.0 0.0 1 1 7.4e-05 0.043 14.2 0.0 1 21 163 183 163 223 0.85 RNA helicase ATPase_2 PF01637.18 233 CP020480_00022 - 329 0.013 15.4 0.0 1 1 3.6e-05 0.021 14.8 0.0 23 82 163 226 150 281 0.86 ATPase domain predominantly from Archaea NACHT PF05729.12 166 CP020480_00022 - 329 0.015 15.2 0.0 1 1 4.4e-05 0.025 14.5 0.0 3 22 163 182 161 185 0.91 NACHT domain AAA_29 PF13555.6 61 CP020480_00022 - 329 0.015 15.0 0.0 1 1 6e-05 0.035 13.9 0.0 8 39 148 177 139 183 0.74 P-loop containing region of AAA domain DUF87 PF01935.17 227 CP020480_00022 - 329 0.015 15.4 1.0 1 2 2.4 1.4e+03 -0.8 0.1 152 187 105 138 37 158 0.65 Helicase HerA, central domain DUF87 PF01935.17 227 CP020480_00022 - 329 0.015 15.4 1.0 2 2 5.1e-05 0.03 14.4 0.2 24 45 161 182 138 193 0.82 Helicase HerA, central domain DUF815 PF05673.13 250 CP020480_00022 - 329 0.021 14.0 0.0 1 1 5.4e-05 0.031 13.4 0.0 11 76 117 183 107 209 0.79 Protein of unknown function (DUF815) DEAD PF00270.29 176 CP020480_00022 - 329 0.021 14.6 0.0 1 1 5.2e-05 0.03 14.1 0.0 11 32 157 177 144 283 0.83 DEAD/DEAH box helicase Mg_chelatase PF01078.21 207 CP020480_00022 - 329 0.023 14.1 0.0 1 2 1.9 1.1e+03 -1.2 0.0 40 59 84 103 81 125 0.82 Magnesium chelatase, subunit ChlI Mg_chelatase PF01078.21 207 CP020480_00022 - 329 0.023 14.1 0.0 2 2 0.00018 0.1 11.9 0.0 7 49 145 187 139 227 0.82 Magnesium chelatase, subunit ChlI ATP_bind_1 PF03029.17 241 CP020480_00022 - 329 0.027 14.3 0.0 1 1 8.5e-05 0.049 13.4 0.0 1 23 165 187 165 193 0.86 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 167 CP020480_00022 - 329 0.045 13.7 0.0 1 1 0.00012 0.072 13.0 0.0 64 121 127 182 110 199 0.67 RsgA GTPase TrwB_AAD_bind PF10412.9 386 CP020480_00022 - 329 0.046 12.6 0.0 1 1 0.00014 0.079 11.8 0.0 17 45 162 190 156 221 0.78 Type IV secretion-system coupling protein DNA-binding domain Dynamin_N PF00350.23 168 CP020480_00022 - 329 0.051 13.6 0.0 1 2 1.1 6.2e+02 0.3 0.0 21 53 84 115 25 156 0.64 Dynamin family Dynamin_N PF00350.23 168 CP020480_00022 - 329 0.051 13.6 0.0 2 2 0.00068 0.4 10.7 0.0 1 32 163 192 163 221 0.88 Dynamin family ResIII PF04851.15 171 CP020480_00022 - 329 0.055 13.5 0.1 1 1 0.00021 0.12 12.4 0.1 5 46 142 182 137 224 0.87 Type III restriction enzyme, res subunit SMC_N PF02463.19 220 CP020480_00022 - 329 0.063 12.7 0.1 1 1 0.0002 0.12 11.8 0.1 7 44 146 180 137 206 0.76 RecF/RecN/SMC N terminal domain PduV-EutP PF10662.9 143 CP020480_00022 - 329 0.07 12.9 0.0 1 2 0.0012 0.7 9.6 0.0 2 22 161 181 160 204 0.88 Ethanolamine utilisation - propanediol utilisation PduV-EutP PF10662.9 143 CP020480_00022 - 329 0.07 12.9 0.0 2 2 0.77 4.4e+02 0.5 0.0 76 109 288 321 275 326 0.80 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 130 CP020480_00022 - 329 0.073 13.6 0.0 1 1 0.00025 0.14 12.7 0.0 1 93 163 278 163 292 0.56 AAA domain PRK PF00485.18 197 CP020480_00022 - 329 0.089 12.5 0.0 1 1 0.00028 0.16 11.7 0.0 2 37 163 197 162 224 0.68 Phosphoribulokinase / Uridine kinase family MobB PF03205.14 133 CP020480_00022 - 329 0.09 12.7 0.0 1 1 0.00033 0.19 11.6 0.0 2 22 163 183 162 199 0.88 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.6 131 CP020480_00022 - 329 0.091 12.8 0.3 1 1 0.00036 0.21 11.6 0.0 3 50 161 208 160 241 0.76 AAA domain GvpD PF07088.11 484 CP020480_00022 - 329 0.093 11.3 0.0 1 1 0.00021 0.12 11.0 0.0 8 43 158 193 150 260 0.74 GvpD gas vesicle protein TrbI PF03743.14 187 CP020480_00024 - 216 2.2e-47 161.4 0.1 1 1 1.4e-51 2.5e-47 161.2 0.1 1 187 25 206 25 206 0.98 Bacterial conjugation TrbI-like protein DUF5345 PF17280.2 77 CP020480_00025 - 73 0.01 15.8 0.1 1 1 3e-06 0.018 15.0 0.1 31 61 12 42 4 44 0.90 Family of unknown function (DUF5345) DUF3671 PF12420.8 115 CP020480_00025 - 73 0.029 14.4 0.2 1 1 6e-06 0.036 14.1 0.2 31 86 6 62 2 67 0.78 Protein of unknown function Cyt_bd_oxida_I PF01654.17 418 CP020480_00025 - 73 0.074 11.7 0.0 1 1 1.3e-05 0.079 11.6 0.0 182 208 21 51 12 62 0.76 Cytochrome bd terminal oxidase subunit I CagX PF03524.15 211 CP020480_00026 - 316 7.1e-54 182.7 0.7 1 1 8e-58 1.4e-53 181.7 0.7 2 211 29 270 28 270 0.92 Conjugal transfer protein VirB8 PF04335.13 214 CP020480_00027 - 219 8.4e-50 169.6 0.1 1 1 5.7e-54 1e-49 169.3 0.1 5 214 10 216 7 216 0.92 VirB8 protein VASP_tetra PF08776.11 37 CP020480_00028 - 69 0.063 12.9 6.4 1 1 9.1e-06 0.16 11.5 6.4 6 35 35 63 35 65 0.92 VASP tetramerisation domain TrbL PF04610.14 215 CP020480_00030 - 331 1.2e-32 113.5 25.3 1 1 8.9e-37 1.6e-32 113.0 25.3 1 212 40 245 40 279 0.91 TrbL/VirB6 plasmid conjugal transfer protein T4SS PF07996.11 197 CP020480_00031 - 245 2e-23 83.9 15.9 1 1 4e-27 2.4e-23 83.6 15.9 1 195 21 225 21 227 0.91 Type IV secretion system proteins CHASE4 PF05228.13 137 CP020480_00031 - 245 0.051 13.8 5.7 1 3 0.0039 23 5.2 0.6 4 36 36 68 35 71 0.89 CHASE4 domain CHASE4 PF05228.13 137 CP020480_00031 - 245 0.051 13.8 5.7 2 3 0.00017 1 9.6 0.2 2 58 75 138 74 175 0.79 CHASE4 domain CHASE4 PF05228.13 137 CP020480_00031 - 245 0.051 13.8 5.7 3 3 0.16 9.4e+02 -0.0 0.0 92 122 147 178 138 192 0.86 CHASE4 domain AChE_tetra PF08674.10 37 CP020480_00031 - 245 0.096 12.4 1.2 1 2 8.4e-05 0.5 10.1 0.1 6 29 43 66 41 72 0.92 Acetylcholinesterase tetramerisation domain AChE_tetra PF08674.10 37 CP020480_00031 - 245 0.096 12.4 1.2 2 2 0.082 4.9e+02 0.5 0.1 15 35 123 143 121 145 0.88 Acetylcholinesterase tetramerisation domain Phage_pRha PF09669.10 88 CP020480_00032 - 206 1.4e-29 102.4 0.0 1 1 1.3e-33 2.4e-29 101.7 0.0 2 88 26 124 25 124 0.90 Phage regulatory protein Rha (Phage_pRha) CagE_TrbE_VirB PF03135.14 206 CP020480_00033 - 923 2.5e-43 148.6 0.5 1 1 6.9e-47 6.2e-43 147.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP020480_00033 - 923 1.2e-19 70.3 2.0 1 1 2.4e-23 2.1e-19 69.5 2.0 3 83 4 84 2 85 0.95 Type IV secretory pathway, VirB3-like protein TrbC PF04956.13 99 CP020480_00034 - 85 2.3e-16 59.8 8.3 1 1 2.8e-20 2.5e-16 59.7 8.3 21 99 5 83 1 83 0.95 TrbC/VIRB2 family ThrE PF06738.12 241 CP020480_00034 - 85 0.025 14.0 2.1 1 1 3.2e-06 0.029 13.8 2.1 90 149 21 79 13 83 0.84 Putative threonine/serine exporter CRISPR_Cas2 PF09827.9 76 CP020480_00036 - 128 0.0005 20.2 1.3 1 2 3.4e-08 0.00061 19.9 0.1 5 55 10 71 7 87 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP020480_00036 - 128 0.0005 20.2 1.3 2 2 0.16 2.8e+03 -1.4 0.1 50 63 103 115 89 125 0.60 CRISPR associated protein Cas2 Resolvase PF00239.21 146 CP020480_00037 - 202 1e-32 113.2 0.6 1 1 1.5e-36 1.3e-32 112.9 0.6 2 145 3 144 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP020480_00037 - 202 0.0011 18.6 1.4 1 3 0.55 4.9e+03 -2.6 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP020480_00037 - 202 0.0011 18.6 1.4 2 3 1.4e-05 0.12 12.1 0.1 2 36 117 152 117 154 0.91 Helix-turn-helix domain HTH_38 PF13936.6 44 CP020480_00037 - 202 0.0011 18.6 1.4 3 3 0.0035 31 4.4 0.0 9 26 160 177 158 181 0.88 Helix-turn-helix domain SseC PF04888.12 317 CP020480_00038 - 136 0.0012 18.6 1.4 1 2 1.3e-07 0.0012 18.6 1.4 27 77 8 57 6 60 0.94 Secretion system effector C (SseC) like family SseC PF04888.12 317 CP020480_00038 - 136 0.0012 18.6 1.4 2 2 0.84 7.5e+03 -3.8 4.1 58 70 95 107 93 110 0.75 Secretion system effector C (SseC) like family Leu_Phe_trans PF03588.14 169 CP020480_00038 - 136 0.034 13.7 0.1 1 1 5.4e-06 0.048 13.2 0.1 76 120 5 48 1 54 0.91 Leucyl/phenylalanyl-tRNA protein transferase AAA_25 PF13481.6 194 CP020480_00039 - 597 6.7e-16 58.4 0.0 1 1 3.7e-19 1.3e-15 57.5 0.0 30 193 30 175 15 176 0.84 AAA domain DnaB_C PF03796.15 255 CP020480_00039 - 597 0.00036 20.0 0.0 1 1 5.8e-07 0.0021 17.4 0.0 14 111 28 130 19 179 0.82 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP020480_00039 - 597 0.0014 18.4 0.0 1 2 4.8e-06 0.017 14.8 0.0 45 87 31 73 16 86 0.87 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP020480_00039 - 597 0.0014 18.4 0.0 2 2 0.15 5.3e+02 0.2 0.0 97 118 109 130 97 169 0.73 IstB-like ATP binding protein ATPase PF06745.13 231 CP020480_00039 - 597 0.012 15.0 0.0 1 2 1.2e-05 0.044 13.1 0.0 16 71 30 84 24 214 0.87 KaiC ATPase PF06745.13 231 CP020480_00039 - 597 0.012 15.0 0.0 2 2 0.85 3e+03 -2.7 0.0 137 160 329 352 322 356 0.83 KaiC AAA PF00004.29 132 CP020480_00039 - 597 0.076 13.4 0.3 1 3 0.00025 0.89 10.0 0.0 2 105 37 166 36 177 0.64 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP020480_00039 - 597 0.076 13.4 0.3 2 3 0.3 1.1e+03 0.0 0.0 55 74 417 434 380 456 0.77 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP020480_00039 - 597 0.076 13.4 0.3 3 3 4 1.4e+04 -3.6 0.0 23 46 495 520 475 526 0.66 ATPase family associated with various cellular activities (AAA) Toprim_3 PF13362.6 95 CP020480_00040 - 376 4.6e-09 36.5 0.0 1 1 8.4e-13 7.5e-09 35.8 0.0 3 94 264 365 262 366 0.83 Toprim domain Toprim_4 PF13662.6 89 CP020480_00040 - 376 0.001 19.5 0.1 1 1 2.5e-07 0.0023 18.4 0.1 2 83 262 337 261 341 0.89 Toprim domain Fic PF02661.18 97 CP020480_00041 - 244 3.3e-17 63.2 0.1 1 2 5.1e-21 9.2e-17 61.7 0.0 2 96 80 180 79 181 0.93 Fic/DOC family Fic PF02661.18 97 CP020480_00041 - 244 3.3e-17 63.2 0.1 2 2 0.34 6.1e+03 -1.8 0.0 37 57 200 220 190 232 0.60 Fic/DOC family ANAPC4 PF12896.7 204 CP020480_00043 - 101 0.027 14.0 0.1 1 1 3.8e-06 0.034 13.6 0.1 45 88 28 70 22 81 0.92 Anaphase-promoting complex, cyclosome, subunit 4 MSG PF02349.15 75 CP020480_00043 - 101 0.071 13.3 4.6 1 1 1e-05 0.094 12.9 4.6 18 65 29 79 21 84 0.80 Major surface glycoprotein PDDEXK_4 PF14281.6 180 CP023447_00001 - 472 3e-38 131.8 13.1 1 3 1.7e-42 3e-38 131.8 13.1 2 176 27 218 26 220 0.94 PD-(D/E)XK nuclease superfamily PDDEXK_4 PF14281.6 180 CP023447_00001 - 472 3e-38 131.8 13.1 2 3 0.0036 65 3.6 0.5 116 170 360 412 327 422 0.83 PD-(D/E)XK nuclease superfamily PDDEXK_4 PF14281.6 180 CP023447_00001 - 472 3e-38 131.8 13.1 3 3 0.18 3.2e+03 -1.9 0.0 18 32 431 445 430 462 0.75 PD-(D/E)XK nuclease superfamily Eco57I PF07669.11 106 CP023447_00002 - 1246 2.1e-19 70.0 0.1 1 1 2.7e-22 1.2e-18 67.5 0.1 3 105 808 917 805 918 0.95 Eco57I restriction-modification methylase TaqI_C PF12950.7 120 CP023447_00002 - 1246 1.8e-12 47.4 1.7 1 4 0.89 4e+03 -2.1 0.3 91 115 263 290 211 322 0.63 TaqI-like C-terminal specificity domain TaqI_C PF12950.7 120 CP023447_00002 - 1246 1.8e-12 47.4 1.7 2 4 0.9 4e+03 -2.2 0.0 75 93 356 374 343 383 0.77 TaqI-like C-terminal specificity domain TaqI_C PF12950.7 120 CP023447_00002 - 1246 1.8e-12 47.4 1.7 3 4 0.94 4.2e+03 -2.2 0.1 5 35 605 637 602 720 0.58 TaqI-like C-terminal specificity domain TaqI_C PF12950.7 120 CP023447_00002 - 1246 1.8e-12 47.4 1.7 4 4 4.1e-16 1.8e-12 47.4 1.7 2 120 1028 1185 1027 1185 0.84 TaqI-like C-terminal specificity domain Mrr_cat PF04471.12 115 CP023447_00002 - 1246 0.018 15.1 0.0 1 2 2.5e-05 0.11 12.5 0.0 16 67 59 118 49 139 0.80 Restriction endonuclease Mrr_cat PF04471.12 115 CP023447_00002 - 1246 0.018 15.1 0.0 2 2 2.1 9.4e+03 -3.4 0.0 79 100 996 1020 989 1037 0.60 Restriction endonuclease ACP_PD PF04336.12 105 CP023447_00002 - 1246 0.019 15.4 0.2 1 2 0.1 4.6e+02 1.3 0.0 1 40 937 980 937 1002 0.68 Acyl carrier protein phosphodiesterase ACP_PD PF04336.12 105 CP023447_00002 - 1246 0.019 15.4 0.2 2 2 0.00027 1.2 9.6 0.1 37 104 1020 1085 1001 1086 0.70 Acyl carrier protein phosphodiesterase Pentapeptide_3 PF13576.6 48 CP023447_00003 - 663 6.7e-11 42.2 11.9 1 5 0.037 6.6e+02 0.6 0.1 11 19 135 143 120 147 0.69 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 48 CP023447_00003 - 663 6.7e-11 42.2 11.9 2 5 0.0037 66 3.8 2.1 1 33 182 204 158 207 0.60 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 48 CP023447_00003 - 663 6.7e-11 42.2 11.9 3 5 0.08 1.4e+03 -0.5 0.0 27 37 239 250 218 253 0.51 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 48 CP023447_00003 - 663 6.7e-11 42.2 11.9 4 5 3.7e-08 0.00066 19.8 2.3 21 47 260 289 257 290 0.84 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 48 CP023447_00003 - 663 6.7e-11 42.2 11.9 5 5 2.7e-13 4.9e-09 36.2 2.3 1 43 275 318 275 323 0.95 Pentapeptide repeats (9 copies) SIMPL PF04402.14 200 CP023447_00004 - 233 3.7e-14 53.7 0.6 1 1 7.6e-18 4.5e-14 53.4 0.6 1 160 37 205 37 227 0.71 Protein of unknown function (DUF541) DUF4116 PF13475.6 49 CP023447_00004 - 233 0.036 13.8 1.6 1 2 6e-06 0.036 13.8 1.6 11 43 60 95 56 108 0.77 Domain of unknown function (DUF4116) DUF4116 PF13475.6 49 CP023447_00004 - 233 0.036 13.8 1.6 2 2 0.95 5.7e+03 -2.9 0.0 10 23 152 165 150 167 0.71 Domain of unknown function (DUF4116) ATR13 PF16829.5 101 CP023447_00004 - 233 0.081 13.3 0.5 1 2 0.00015 0.88 10.0 0.0 15 82 23 86 12 106 0.82 Avirulence protein ATR13, RxLR effector ATR13 PF16829.5 101 CP023447_00004 - 233 0.081 13.3 0.5 2 2 0.092 5.5e+02 1.0 0.1 28 80 177 228 146 232 0.69 Avirulence protein ATR13, RxLR effector MFS_1 PF07690.16 353 CP023447_00005 - 400 1.1e-42 146.2 39.9 1 2 2.5e-46 1.1e-42 146.2 39.9 2 351 20 361 19 363 0.91 Major Facilitator Superfamily MFS_1 PF07690.16 353 CP023447_00005 - 400 1.1e-42 146.2 39.9 2 2 0.072 3.2e+02 -0.0 0.9 135 172 360 394 354 400 0.51 Major Facilitator Superfamily Sugar_tr PF00083.24 452 CP023447_00005 - 400 3.9e-10 39.2 8.9 1 3 8.6e-14 3.9e-10 39.2 8.9 17 212 20 211 16 221 0.93 Sugar (and other) transporter Sugar_tr PF00083.24 452 CP023447_00005 - 400 3.9e-10 39.2 8.9 2 3 0.081 3.6e+02 -0.3 3.0 317 361 254 300 198 334 0.65 Sugar (and other) transporter Sugar_tr PF00083.24 452 CP023447_00005 - 400 3.9e-10 39.2 8.9 3 3 4 1.8e+04 -11.9 16.1 385 433 344 392 231 400 0.55 Sugar (and other) transporter MFS_3 PF05977.13 522 CP023447_00005 - 400 2.5e-06 26.2 18.2 1 1 6.6e-10 3e-06 25.9 18.2 60 397 64 398 13 400 0.82 Transmembrane secretion effector MFS_2 PF13347.6 427 CP023447_00005 - 400 1.2e-05 24.0 43.0 1 3 3.3e-06 0.015 13.9 9.7 226 383 16 164 7 166 0.87 MFS/sugar transport protein MFS_2 PF13347.6 427 CP023447_00005 - 400 1.2e-05 24.0 43.0 2 3 1.3e-07 0.00059 18.5 22.9 148 371 144 367 133 370 0.73 MFS/sugar transport protein MFS_2 PF13347.6 427 CP023447_00005 - 400 1.2e-05 24.0 43.0 3 3 0.099 4.4e+02 -0.8 2.0 151 189 356 393 338 399 0.48 MFS/sugar transport protein DUF2130 PF09903.9 257 CP023447_00006 - 449 1.7e-46 158.6 15.9 1 4 0.024 4.3e+02 -0.0 2.8 220 255 30 68 15 74 0.52 Uncharacterized protein conserved in bacteria (DUF2130) DUF2130 PF09903.9 257 CP023447_00006 - 449 1.7e-46 158.6 15.9 2 4 1 1.8e+04 -9.4 20.8 171 229 76 131 57 151 0.53 Uncharacterized protein conserved in bacteria (DUF2130) DUF2130 PF09903.9 257 CP023447_00006 - 449 1.7e-46 158.6 15.9 3 4 1 1.8e+04 -5.7 8.1 166 213 144 191 139 194 0.65 Uncharacterized protein conserved in bacteria (DUF2130) DUF2130 PF09903.9 257 CP023447_00006 - 449 1.7e-46 158.6 15.9 4 4 9.5e-51 1.7e-46 158.6 15.9 3 243 193 421 191 443 0.92 Uncharacterized protein conserved in bacteria (DUF2130) Cytochrom_C PF00034.21 92 CP023447_00007 - 347 3.7e-14 53.6 0.0 1 2 0.0028 8.4 7.6 0.2 10 90 96 171 87 173 0.41 Cytochrome c Cytochrom_C PF00034.21 92 CP023447_00007 - 347 3.7e-14 53.6 0.0 2 2 5.9e-14 1.8e-10 41.8 0.0 3 90 203 287 201 288 0.88 Cytochrome c Cytochrome_CBB3 PF13442.6 67 CP023447_00007 - 347 5.7e-11 42.6 0.0 1 2 0.00045 1.3 9.4 0.0 11 25 94 119 85 168 0.57 Cytochrome C oxidase, cbb3-type, subunit III Cytochrome_CBB3 PF13442.6 67 CP023447_00007 - 347 5.7e-11 42.6 0.0 2 2 9.5e-11 2.8e-07 30.7 0.0 2 67 200 285 199 285 0.73 Cytochrome C oxidase, cbb3-type, subunit III Cytochrome_C7 PF14522.6 73 CP023447_00007 - 347 0.016 15.2 0.0 1 2 0.001 3.1 7.9 0.0 42 59 89 107 74 126 0.77 Cytochrome c7 and related cytochrome c Cytochrome_C7 PF14522.6 73 CP023447_00007 - 347 0.016 15.2 0.0 2 2 0.008 24 5.0 0.0 14 22 210 218 191 234 0.67 Cytochrome c7 and related cytochrome c Cytochrom_C550 PF14495.6 136 CP023447_00007 - 347 0.022 14.5 0.7 1 3 0.54 1.6e+03 -1.3 0.0 34 43 95 104 79 114 0.79 Cytochrome c-550 domain Cytochrom_C550 PF14495.6 136 CP023447_00007 - 347 0.022 14.5 0.7 2 3 3.5e-05 0.11 12.3 0.0 27 43 202 218 193 235 0.77 Cytochrome c-550 domain Cytochrom_C550 PF14495.6 136 CP023447_00007 - 347 0.022 14.5 0.7 3 3 1.3 3.9e+03 -2.5 0.0 107 119 273 285 271 287 0.90 Cytochrome c-550 domain Paired_CXXCH_1 PF09699.10 42 CP023447_00007 - 347 0.042 13.6 0.3 1 2 0.0025 7.4 6.4 0.1 24 40 89 105 79 107 0.75 Doubled CXXCH motif (Paired_CXXCH_1) Paired_CXXCH_1 PF09699.10 42 CP023447_00007 - 347 0.042 13.6 0.3 2 2 0.0075 22 4.9 0.0 7 15 210 218 201 233 0.76 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_c3_2 PF14537.6 80 CP023447_00007 - 347 0.094 13.2 0.1 1 2 0.0068 20 5.7 0.0 54 66 91 103 73 112 0.64 Cytochrome c3 Cytochrom_c3_2 PF14537.6 80 CP023447_00007 - 347 0.094 13.2 0.1 2 2 0.0099 30 5.2 0.0 22 36 205 219 197 235 0.72 Cytochrome c3 Peptidase_S49_N PF08496.10 153 CP023447_00008 - 215 0.034 14.2 0.3 1 1 3.8e-06 0.068 13.2 0.3 8 69 37 99 29 135 0.71 Peptidase family S49 N-terminal GTP_EFTU PF00009.27 194 CP023447_00009 - 602 2.2e-54 184.0 0.4 1 1 2e-57 3.5e-54 183.3 0.4 1 193 2 194 2 195 0.91 Elongation factor Tu GTP binding domain EFG_C PF00679.24 89 CP023447_00009 - 602 2.8e-22 78.6 0.0 1 1 4e-25 7.1e-22 77.2 0.0 3 86 395 478 393 481 0.96 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 74 CP023447_00009 - 602 9.2e-11 42.0 1.5 1 1 1.3e-13 2.4e-10 40.7 1.5 1 72 218 286 218 288 0.92 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 114 CP023447_00009 - 602 8.2e-07 29.1 0.4 1 1 9e-10 1.6e-06 28.2 0.4 2 114 7 128 6 128 0.78 50S ribosome-binding GTPase Septin PF00735.18 281 CP023447_00009 - 602 0.00062 19.1 0.2 1 1 6e-07 0.0011 18.3 0.2 6 75 6 80 4 98 0.76 Septin Dynamin_N PF00350.23 168 CP023447_00009 - 602 0.0046 17.0 0.1 1 1 2.8e-05 0.05 13.7 0.1 62 168 31 129 11 129 0.69 Dynamin family FeoB_N PF02421.18 156 CP023447_00009 - 602 0.011 15.3 0.9 1 3 0.83 1.5e+03 -1.4 0.0 2 22 6 26 5 32 0.83 Ferrous iron transport protein B FeoB_N PF02421.18 156 CP023447_00009 - 602 0.011 15.3 0.9 2 3 0.00011 0.2 11.2 0.2 32 117 52 131 44 171 0.81 Ferrous iron transport protein B FeoB_N PF02421.18 156 CP023447_00009 - 602 0.011 15.3 0.9 3 3 0.4 7.2e+02 -0.4 0.0 101 146 301 346 222 353 0.74 Ferrous iron transport protein B SRPRB PF09439.10 181 CP023447_00009 - 602 0.049 13.1 1.0 1 2 6.8e-05 0.12 11.8 0.1 5 83 6 98 2 102 0.64 Signal recognition particle receptor beta subunit SRPRB PF09439.10 181 CP023447_00009 - 602 0.049 13.1 1.0 2 2 3.4 6.2e+03 -3.6 0.1 131 148 328 345 326 357 0.73 Signal recognition particle receptor beta subunit AIG1 PF04548.16 212 CP023447_00009 - 602 0.058 12.7 0.0 1 1 6.5e-05 0.12 11.7 0.0 32 78 50 96 32 105 0.81 AIG1 family EFG_II PF14492.6 75 CP023447_00009 - 602 0.085 13.0 0.1 1 1 0.00012 0.21 11.7 0.1 18 66 327 374 320 382 0.82 Elongation Factor G, domain II PTS_EIIA_2 PF00359.22 144 CP023447_00010 - 107 0.00096 19.1 2.8 1 1 2.6e-07 0.0016 18.4 2.7 103 142 39 77 11 79 0.86 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FANCI_S2 PF14676.6 164 CP023447_00010 - 107 0.028 14.7 0.9 1 1 6.8e-06 0.04 14.2 0.9 57 115 3 61 1 84 0.85 FANCI solenoid 2 Rotamase PF00639.21 97 CP023447_00010 - 107 0.087 13.8 0.1 1 1 1.9e-05 0.11 13.4 0.1 2 85 9 89 9 93 0.90 PPIC-type PPIASE domain Flg_hook PF02120.16 85 CP023447_00011 - 596 2.2e-14 53.1 1.0 1 2 0.17 3e+03 -1.8 0.0 55 76 146 167 145 169 0.88 Flagellar hook-length control protein FliK Flg_hook PF02120.16 85 CP023447_00011 - 596 2.2e-14 53.1 1.0 2 2 6.7e-18 1.2e-13 50.7 0.3 6 84 483 560 479 562 0.93 Flagellar hook-length control protein FliK FlgD_ig PF13860.6 79 CP023447_00012 - 294 1.8e-18 66.1 0.1 1 1 8.7e-22 5.2e-18 64.7 0.1 2 78 128 209 127 210 0.93 FlgD Ig-like domain FlgD PF03963.14 75 CP023447_00012 - 294 1.1e-16 60.9 11.6 1 2 1.8e-20 1.1e-16 60.9 11.6 4 74 24 94 8 95 0.80 Flagellar hook capping protein - N-terminal region FlgD PF03963.14 75 CP023447_00012 - 294 1.1e-16 60.9 11.6 2 2 1.1 6.9e+03 -2.5 0.1 63 74 97 108 96 109 0.84 Flagellar hook capping protein - N-terminal region FLgD_tudor PF13861.6 58 CP023447_00012 - 294 1.8e-05 24.9 0.0 1 1 6e-09 3.6e-05 23.9 0.0 2 58 111 248 110 248 0.97 FlgD Tudor-like domain Flg_bbr_C PF06429.13 74 CP023447_00013 - 545 1.2e-19 70.1 4.4 1 2 0.18 1.1e+03 -0.1 0.0 21 44 417 439 401 445 0.72 Flagellar basal body rod FlgEFG protein C-terminal Flg_bbr_C PF06429.13 74 CP023447_00013 - 545 1.2e-19 70.1 4.4 2 2 5.7e-23 3.4e-19 68.7 1.8 1 74 463 543 463 543 0.91 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 31 CP023447_00013 - 545 7.3e-08 32.2 1.9 1 2 4.5e-11 2.7e-07 30.4 1.9 1 31 5 35 5 35 0.90 Flagella basal body rod protein Flg_bb_rod PF00460.20 31 CP023447_00013 - 545 7.3e-08 32.2 1.9 2 2 1.9 1.1e+04 -3.6 0.0 7 17 284 294 284 295 0.84 Flagella basal body rod protein VWA_N PF08399.11 123 CP023447_00013 - 545 0.046 14.2 0.0 1 1 2.6e-05 0.15 12.5 0.0 46 91 162 205 142 212 0.88 VWA N-terminal FapA PF03961.13 454 CP023447_00014 - 495 4.3e-54 183.8 24.2 1 1 2.4e-58 4.3e-54 183.8 24.2 46 433 17 424 2 466 0.93 Flagellar Assembly Protein A Ribosomal_L1 PF00687.21 204 CP023447_00015 - 138 0.013 15.2 0.1 1 1 1.7e-06 0.015 15.0 0.1 70 140 31 106 12 126 0.79 Ribosomal protein L1p/L10e family Rep_4 PF05797.11 344 CP023447_00015 - 138 0.021 14.0 0.5 1 1 4.1e-06 0.037 13.1 0.3 20 65 89 134 82 137 0.87 Yeast trans-acting factor (REP1/REP2) Hemerythrin PF01814.23 131 CP023447_00016 - 239 5.9e-08 33.4 3.1 1 2 6.6e-12 5.9e-08 33.4 3.1 6 124 16 125 14 130 0.88 Hemerythrin HHE cation binding domain Hemerythrin PF01814.23 131 CP023447_00016 - 239 5.9e-08 33.4 3.1 2 2 1.3 1.2e+04 -3.2 0.1 38 52 214 228 202 229 0.66 Hemerythrin HHE cation binding domain CC2D2AN-C2 PF15625.6 173 CP023447_00016 - 239 0.09 12.5 0.1 1 2 0.03 2.7e+02 1.2 0.1 62 122 15 76 2 101 0.72 CC2D2A N-terminal C2 domain CC2D2AN-C2 PF15625.6 173 CP023447_00016 - 239 0.09 12.5 0.1 2 2 9.8e-05 0.88 9.3 0.0 69 125 170 233 151 239 0.73 CC2D2A N-terminal C2 domain Na_sulph_symp PF00939.19 472 CP023447_00017 - 114 3.4e-25 89.0 0.1 1 1 4.4e-29 3.9e-25 88.8 0.1 95 182 1 88 1 98 0.96 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 300 CP023447_00017 - 114 0.014 14.6 0.0 1 1 1.7e-06 0.015 14.5 0.0 47 111 1 68 1 84 0.90 Citrate transporter Na_sulph_symp PF00939.19 472 CP023447_00018 - 71 4e-09 36.0 1.0 1 1 7.6e-13 6.8e-09 35.3 1.0 234 284 10 60 1 65 0.95 Sodium:sulfate symporter transmembrane region ETRAMP PF09716.10 83 CP023447_00018 - 71 0.026 14.6 0.0 1 1 3.3e-06 0.029 14.4 0.0 31 75 23 65 5 69 0.77 Malarial early transcribed membrane protein (ETRAMP) Na_sulph_symp PF00939.19 472 CP023447_00019 - 79 1.9e-14 53.6 4.1 1 1 3.3e-18 1.9e-14 53.6 4.1 280 349 9 78 1 79 0.92 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 300 CP023447_00019 - 79 0.0066 15.7 4.0 1 1 1.4e-06 0.0085 15.3 4.0 207 240 31 78 7 79 0.75 Citrate transporter AGTRAP PF06396.11 148 CP023447_00019 - 79 0.095 12.5 1.3 1 1 1.7e-05 0.1 12.4 1.3 29 92 4 67 1 77 0.84 Angiotensin II, type I receptor-associated protein (AGTRAP) Na_sulph_symp PF00939.19 472 CP023447_00020 - 83 1.9e-14 53.6 11.4 1 1 1.1e-18 1.9e-14 53.6 11.4 395 470 6 81 1 83 0.90 Sodium:sulfate symporter transmembrane region tRNA_Me_trans PF03054.16 356 CP023447_00021 - 338 1.2e-108 363.1 1.7 1 1 5.4e-112 1.4e-108 362.9 1.7 1 356 1 337 1 337 0.96 tRNA methyl transferase ATP_bind_3 PF01171.20 182 CP023447_00021 - 338 5.6e-07 29.5 0.0 1 1 5.6e-10 1.4e-06 28.2 0.0 1 158 2 169 2 174 0.83 PP-loop family ThiI PF02568.14 197 CP023447_00021 - 338 1.4e-06 28.1 0.0 1 2 1.4e-08 3.5e-05 23.5 0.0 5 57 2 56 1 121 0.73 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 CP023447_00021 - 338 1.4e-06 28.1 0.0 2 2 0.044 1.1e+02 2.2 0.0 138 169 150 181 140 192 0.71 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 210 CP023447_00021 - 338 2.5e-06 27.2 0.1 1 1 3.3e-09 8.4e-06 25.4 0.1 1 174 2 171 2 194 0.70 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 242 CP023447_00021 - 338 3.5e-05 23.0 0.0 1 2 1.9e-07 0.00049 19.3 0.0 20 85 2 68 1 117 0.85 NAD synthase NAD_synthase PF02540.17 242 CP023447_00021 - 338 3.5e-05 23.0 0.0 2 2 0.057 1.5e+02 1.4 0.0 148 181 152 185 145 212 0.82 NAD synthase Arginosuc_synth PF00764.19 388 CP023447_00021 - 338 0.00027 20.3 0.0 1 1 1.6e-07 0.00042 19.7 0.0 2 112 5 116 4 125 0.80 Arginosuccinate synthase PAPS_reduct PF01507.19 174 CP023447_00021 - 338 0.031 14.3 0.0 1 1 2e-05 0.052 13.6 0.0 2 150 3 169 2 174 0.81 Phosphoadenosine phosphosulfate reductase family Lysine_decarbox PF03641.14 132 CP023447_00022 - 122 2.8e-25 88.9 0.0 1 1 3.3e-29 2.9e-25 88.9 0.0 16 126 4 113 1 119 0.89 Possible lysine decarboxylase LDcluster4 PF18306.1 157 CP023447_00022 - 122 0.09 12.4 0.0 1 1 1.1e-05 0.098 12.2 0.0 67 116 11 59 2 105 0.70 SLOG cluster4 family LDcluster4 PF18306.1 157 CP023447_00023 - 75 7.8e-06 25.6 0.1 1 1 1.6e-09 9.3e-06 25.3 0.1 4 54 22 72 19 74 0.85 SLOG cluster4 family DNA_processg_A PF02481.15 210 CP023447_00023 - 75 0.00045 19.5 0.0 1 1 7.6e-08 0.00046 19.5 0.0 59 95 38 74 14 75 0.81 DNA recombination-mediator protein A SKI PF01202.22 158 CP023447_00023 - 75 0.029 14.5 0.0 1 1 5.1e-06 0.031 14.4 0.0 43 83 31 72 17 75 0.85 Shikimate kinase Peptidase_C39 PF03412.15 133 CP023447_00028 - 198 2e-16 60.0 0.0 1 1 4.3e-20 2.6e-16 59.7 0.0 3 131 34 174 32 176 0.84 Peptidase C39 family Peptidase_C70 PF12385.8 145 CP023447_00028 - 198 0.00052 20.0 0.0 1 1 1.2e-07 0.00072 19.6 0.0 11 131 37 147 21 159 0.79 Papain-like cysteine protease AvrRpt2 AHJR-like PF18743.1 123 CP023447_00028 - 198 0.068 12.7 0.0 1 1 2.7e-05 0.16 11.5 0.0 11 42 153 184 145 188 0.89 REase_AHJR-like FliMN_C PF01052.20 73 CP023447_00029 - 280 4.6e-21 74.6 1.5 1 1 4e-25 7.2e-21 74.0 1.5 2 71 200 269 199 271 0.98 Type III flagellar switch regulator (C-ring) FliN C-term FliM PF02154.15 192 CP023447_00030 - 359 4.8e-75 251.7 1.4 1 1 1.9e-78 6.9e-75 251.2 1.4 1 192 41 231 41 231 0.99 Flagellar motor switch protein FliM FliMN_C PF01052.20 73 CP023447_00030 - 359 8e-14 51.4 0.3 1 1 3.7e-17 1.3e-13 50.7 0.3 3 72 255 324 253 325 0.96 Type III flagellar switch regulator (C-ring) FliN C-term DUF3567 PF12091.8 89 CP023447_00030 - 359 0.029 14.5 1.3 1 2 0.35 1.3e+03 -0.4 0.1 67 86 6 25 2 27 0.82 Protein of unknown function (DUF3567) DUF3567 PF12091.8 89 CP023447_00030 - 359 0.029 14.5 1.3 2 2 4.2e-05 0.15 12.2 0.2 41 80 301 340 291 348 0.91 Protein of unknown function (DUF3567) 7TM_GPCR_Sri PF10327.9 303 CP023447_00030 - 359 0.045 12.9 0.1 1 1 1.9e-05 0.068 12.3 0.1 157 224 165 232 156 249 0.91 Serpentine type 7TM GPCR chemoreceptor Sri Pertactin PF03212.14 121 CP023447_00030 - 359 0.085 12.8 0.0 1 2 0.013 46 4.0 0.0 16 50 100 140 87 151 0.72 Pertactin Pertactin PF03212.14 121 CP023447_00030 - 359 0.085 12.8 0.0 2 2 0.0022 7.9 6.4 0.0 29 68 263 302 231 307 0.86 Pertactin Sigma70_r4 PF04545.16 50 CP023447_00031 - 238 2.9e-18 65.1 2.8 1 1 6e-21 8.2e-18 63.7 2.8 1 50 186 235 186 235 0.98 Sigma-70, region 4 Sigma70_r2 PF04542.14 71 CP023447_00031 - 238 1.7e-10 40.5 0.0 1 1 2.1e-13 2.9e-10 39.8 0.0 1 67 28 97 28 100 0.97 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 54 CP023447_00031 - 238 1.6e-08 34.1 2.3 1 2 4.4 6e+03 -3.0 0.2 8 22 30 44 27 47 0.75 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 54 CP023447_00031 - 238 1.6e-08 34.1 2.3 2 2 1.1e-11 1.6e-08 34.1 2.3 2 54 181 233 180 233 0.92 Sigma-70, region 4 Sigma70_r3 PF04539.16 78 CP023447_00031 - 238 0.00075 19.6 5.5 1 3 2.1 2.9e+03 -1.5 0.1 29 51 9 31 8 33 0.78 Sigma-70 region 3 Sigma70_r3 PF04539.16 78 CP023447_00031 - 238 0.00075 19.6 5.5 2 3 1.4e-06 0.0019 18.3 0.2 5 61 111 167 108 181 0.79 Sigma-70 region 3 Sigma70_r3 PF04539.16 78 CP023447_00031 - 238 0.00075 19.6 5.5 3 3 0.11 1.5e+02 2.5 0.1 24 40 209 225 205 229 0.69 Sigma-70 region 3 HTH_23 PF13384.6 50 CP023447_00031 - 238 0.0017 18.1 0.1 1 1 2.7e-06 0.0037 17.0 0.1 9 41 196 229 189 235 0.82 Homeodomain-like domain UPF0122 PF04297.14 101 CP023447_00031 - 238 0.0018 18.5 4.1 1 2 2.3 3.2e+03 -1.6 0.0 55 84 85 112 84 126 0.62 Putative helix-turn-helix protein, YlxM / p13 like UPF0122 PF04297.14 101 CP023447_00031 - 238 0.0018 18.5 4.1 2 2 1.3e-06 0.0018 18.5 4.1 18 61 190 233 171 237 0.76 Putative helix-turn-helix protein, YlxM / p13 like MarR_2 PF12802.7 62 CP023447_00031 - 238 0.0027 17.5 0.0 1 1 4.2e-06 0.0058 16.5 0.0 10 47 196 231 183 232 0.83 MarR family HTH_37 PF13744.6 80 CP023447_00031 - 238 0.016 15.1 0.5 1 1 3.1e-05 0.043 13.8 0.5 19 58 196 232 169 237 0.80 Helix-turn-helix domain Sds3 PF08598.11 218 CP023447_00031 - 238 0.028 14.4 9.2 1 1 3.7e-05 0.051 13.6 9.2 26 98 163 238 159 238 0.90 Sds3-like HTH_5 PF01022.20 47 CP023447_00031 - 238 0.036 13.9 0.2 1 1 6.7e-05 0.093 12.6 0.2 14 34 204 224 195 235 0.84 Bacterial regulatory protein, arsR family MarR PF01047.22 59 CP023447_00031 - 238 0.04 13.9 2.5 1 2 1.5 2.1e+03 -1.2 0.1 37 51 170 184 169 188 0.79 MarR family MarR PF01047.22 59 CP023447_00031 - 238 0.04 13.9 2.5 2 2 3.1e-05 0.042 13.8 0.4 9 44 197 232 195 232 0.94 MarR family GerE PF00196.19 57 CP023447_00031 - 238 0.041 13.4 0.1 1 1 5.4e-05 0.075 12.6 0.1 15 46 203 234 188 236 0.82 Bacterial regulatory proteins, luxR family IF-2B PF01008.17 282 CP023447_00031 - 238 0.095 11.9 4.0 1 1 0.00084 1.2 8.3 4.0 30 119 131 222 14 237 0.78 Initiation factor 2 subunit family Hema_stalk PF08720.10 175 CP023447_00032 - 118 0.002 17.8 0.1 1 1 3e-07 0.0026 17.5 0.1 8 69 38 98 29 112 0.88 Influenza C hemagglutinin stalk DUF5531 PF17671.1 152 CP023447_00032 - 118 0.04 13.8 2.6 1 1 6.2e-06 0.056 13.3 2.1 101 136 81 116 76 118 0.91 Family of unknown function (DUF5531) ParA PF10609.9 246 CP023447_00033 - 288 3.1e-26 92.3 1.4 1 1 1.2e-28 1.2e-25 90.4 1.4 3 245 23 260 21 261 0.84 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 177 CP023447_00033 - 288 2e-19 70.2 0.5 1 1 3.7e-22 3.7e-19 69.3 0.5 2 171 24 186 23 194 0.85 AAA domain CbiA PF01656.23 128 CP023447_00033 - 288 2.8e-18 66.2 0.0 1 1 6e-21 5.9e-18 65.1 0.0 1 124 26 238 26 242 0.91 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 271 CP023447_00033 - 288 7.6e-12 45.2 1.2 1 2 1.9e-09 1.9e-06 27.5 0.0 6 70 30 94 24 97 0.92 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_NifH PF00142.18 271 CP023447_00033 - 288 7.6e-12 45.2 1.2 2 2 3.8e-06 0.0038 16.7 0.2 106 264 123 280 118 286 0.79 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 262 CP023447_00033 - 288 4.9e-07 29.3 0.0 1 1 8.8e-10 8.8e-07 28.5 0.0 1 126 24 159 24 199 0.72 ATPase MipZ CBP_BcsQ PF06564.12 234 CP023447_00033 - 288 6e-07 29.2 0.0 1 1 8.6e-10 8.6e-07 28.7 0.0 3 151 25 168 23 206 0.80 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 305 CP023447_00033 - 288 2.7e-06 26.8 3.4 1 2 6.4e-09 6.4e-06 25.6 0.3 5 38 28 61 23 119 0.84 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 CP023447_00033 - 288 2.7e-06 26.8 3.4 2 2 0.13 1.3e+02 1.5 0.2 28 65 154 189 149 234 0.68 Anion-transporting ATPase MeaB PF03308.16 267 CP023447_00033 - 288 3.6e-05 22.9 0.3 1 2 1.9e-06 0.0019 17.2 0.0 14 66 7 61 1 66 0.81 Methylmalonyl Co-A mutase-associated GTPase MeaB MeaB PF03308.16 267 CP023447_00033 - 288 3.6e-05 22.9 0.3 2 2 0.022 22 3.9 0.1 123 153 134 165 124 199 0.87 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 188 CP023447_00033 - 288 3.9e-05 23.5 0.2 1 1 1.2e-07 0.00012 21.9 0.2 1 35 31 65 31 69 0.91 mRNA cleavage and polyadenylation factor CLP1 P-loop VirC1 PF07015.11 231 CP023447_00033 - 288 0.0003 20.1 0.1 1 1 7e-07 0.0007 19.0 0.1 3 39 25 61 23 65 0.95 VirC1 protein AAA_24 PF13479.6 197 CP023447_00033 - 288 0.00049 19.9 0.2 1 2 1.2e-06 0.0011 18.7 0.1 9 73 31 140 26 159 0.93 AAA domain AAA_24 PF13479.6 197 CP023447_00033 - 288 0.00049 19.9 0.2 2 2 2.5 2.5e+03 -2.0 0.0 161 161 187 187 146 249 0.60 AAA domain AAA_26 PF13500.6 198 CP023447_00033 - 288 0.00067 19.5 0.7 1 2 0.00051 0.5 10.1 0.0 3 35 26 58 24 59 0.92 AAA domain AAA_26 PF13500.6 198 CP023447_00033 - 288 0.00067 19.5 0.7 2 2 0.0025 2.4 7.9 0.1 130 192 157 230 112 235 0.71 AAA domain NB-ARC PF00931.22 252 CP023447_00033 - 288 0.0024 17.1 0.4 1 2 0.00013 0.13 11.4 0.1 16 42 21 46 4 61 0.75 NB-ARC domain NB-ARC PF00931.22 252 CP023447_00033 - 288 0.0024 17.1 0.4 2 2 0.027 27 3.8 0.0 151 221 173 240 162 266 0.69 NB-ARC domain NTPase_1 PF03266.15 168 CP023447_00033 - 288 0.0048 16.8 0.2 1 2 2.7e-05 0.027 14.4 0.0 5 31 30 56 25 61 0.88 NTPase NTPase_1 PF03266.15 168 CP023447_00033 - 288 0.0048 16.8 0.2 2 2 1 1e+03 -0.5 0.0 120 159 150 196 142 214 0.57 NTPase SRP54 PF00448.22 196 CP023447_00033 - 288 0.0073 16.0 1.4 1 2 1.6e-05 0.015 14.9 0.1 5 39 28 62 24 65 0.90 SRP54-type protein, GTPase domain SRP54 PF00448.22 196 CP023447_00033 - 288 0.0073 16.0 1.4 2 2 0.75 7.4e+02 -0.4 0.1 82 93 131 143 113 210 0.68 SRP54-type protein, GTPase domain Helicase_RecD PF05127.14 177 CP023447_00033 - 288 0.06 13.2 0.8 1 2 0.031 31 4.4 0.0 69 118 114 159 27 165 0.55 Helicase Helicase_RecD PF05127.14 177 CP023447_00033 - 288 0.06 13.2 0.8 2 2 0.0061 6.1 6.7 0.3 21 98 168 245 160 264 0.75 Helicase AAA_18 PF13238.6 130 CP023447_00033 - 288 0.062 13.8 0.4 1 1 0.00018 0.18 12.4 0.4 4 25 30 80 26 169 0.63 AAA domain APS_kinase PF01583.20 158 CP023447_00033 - 288 0.083 12.8 0.1 1 1 0.00014 0.14 12.0 0.1 6 39 28 61 23 75 0.88 Adenylylsulphate kinase SRP54 PF00448.22 196 CP023447_00034 - 480 1.1e-42 145.9 0.1 1 1 3e-45 1.8e-42 145.2 0.1 2 195 279 470 278 471 0.91 SRP54-type protein, GTPase domain AAA_22 PF13401.6 137 CP023447_00034 - 480 0.00053 20.3 0.0 1 1 2.5e-06 0.0015 18.8 0.0 3 28 276 301 272 333 0.88 AAA domain MMR_HSR1 PF01926.23 114 CP023447_00034 - 480 0.00098 19.2 0.1 1 1 5.9e-06 0.0037 17.3 0.1 3 92 282 403 280 423 0.62 50S ribosome-binding GTPase ResIII PF04851.15 171 CP023447_00034 - 480 0.0015 18.6 0.0 1 3 8 5e+03 -2.7 0.0 101 101 44 44 7 106 0.51 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP023447_00034 - 480 0.0015 18.6 0.0 2 3 0.61 3.8e+02 1.0 1.6 61 94 115 155 101 195 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP023447_00034 - 480 0.0015 18.6 0.0 3 3 2.4e-06 0.0015 18.6 0.0 21 49 261 303 228 317 0.75 Type III restriction enzyme, res subunit AAA_24 PF13479.6 197 CP023447_00034 - 480 0.0015 18.3 0.8 1 2 4.9 3e+03 -2.3 0.0 123 123 162 162 118 209 0.57 AAA domain AAA_24 PF13479.6 197 CP023447_00034 - 480 0.0015 18.3 0.8 2 2 7.1e-06 0.0044 16.8 0.2 3 76 279 367 277 380 0.68 AAA domain AAA_25 PF13481.6 194 CP023447_00034 - 480 0.0021 17.7 0.1 1 2 1.3e-05 0.0079 15.8 0.0 28 61 273 306 267 316 0.87 AAA domain AAA_25 PF13481.6 194 CP023447_00034 - 480 0.0021 17.7 0.1 2 2 3.5 2.2e+03 -2.0 0.0 132 151 346 365 326 368 0.81 AAA domain ABC_tran PF00005.27 137 CP023447_00034 - 480 0.0022 18.5 0.0 1 1 3.6e-06 0.0022 18.5 0.0 4 46 271 318 269 414 0.85 ABC transporter cobW PF02492.19 177 CP023447_00034 - 480 0.0028 17.3 1.4 1 1 5.6e-05 0.035 13.7 1.4 2 152 280 426 279 432 0.70 CobW/HypB/UreG, nucleotide-binding domain Rad17 PF03215.15 186 CP023447_00034 - 480 0.0031 17.5 0.9 1 2 3.7e-05 0.023 14.6 0.0 43 71 276 304 254 319 0.82 Rad17 P-loop domain Rad17 PF03215.15 186 CP023447_00034 - 480 0.0031 17.5 0.9 2 2 1.2 7.4e+02 -0.1 0.1 96 119 364 387 324 449 0.66 Rad17 P-loop domain AAA_7 PF12775.7 181 CP023447_00034 - 480 0.0031 17.0 0.0 1 1 1.3e-05 0.0079 15.7 0.0 30 54 275 299 269 325 0.75 P-loop containing dynein motor region CbiA PF01656.23 128 CP023447_00034 - 480 0.007 16.4 3.3 1 2 2.1 1.3e+03 -0.6 0.1 87 117 171 203 76 213 0.62 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 CP023447_00034 - 480 0.007 16.4 3.3 2 2 0.00011 0.07 13.2 0.9 5 101 284 441 280 464 0.54 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.6 136 CP023447_00034 - 480 0.0072 16.8 0.9 1 2 3.1 1.9e+03 -0.8 0.2 31 52 220 242 174 257 0.60 AAA domain AAA_17 PF13207.6 136 CP023447_00034 - 480 0.0072 16.8 0.9 2 2 5.2e-05 0.032 14.6 0.0 1 115 284 404 284 409 0.68 AAA domain IstB_IS21 PF01695.17 178 CP023447_00034 - 480 0.011 15.5 0.9 1 1 0.00022 0.13 11.9 0.3 42 126 273 374 236 411 0.64 IstB-like ATP binding protein T2SSE PF00437.20 273 CP023447_00034 - 480 0.011 14.8 0.0 1 1 3.2e-05 0.02 14.0 0.0 123 148 272 297 233 315 0.82 Type II/IV secretion system protein AAA_5 PF07728.14 138 CP023447_00034 - 480 0.011 15.7 0.3 1 1 9.3e-05 0.058 13.4 0.3 2 34 281 316 280 412 0.75 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 167 CP023447_00034 - 480 0.012 15.5 0.7 1 3 8.8 5.5e+03 -2.9 0.0 55 87 191 222 188 243 0.64 RsgA GTPase RsgA_GTPase PF03193.16 167 CP023447_00034 - 480 0.012 15.5 0.7 2 3 6.2e-05 0.038 13.9 0.1 93 120 271 299 231 320 0.85 RsgA GTPase RsgA_GTPase PF03193.16 167 CP023447_00034 - 480 0.012 15.5 0.7 3 3 6 3.7e+03 -2.3 0.0 12 26 385 399 355 423 0.57 RsgA GTPase AAA_16 PF13191.6 170 CP023447_00034 - 480 0.021 15.2 0.0 1 1 9e-05 0.056 13.8 0.0 24 48 276 303 260 379 0.77 AAA ATPase domain NB-ARC PF00931.22 252 CP023447_00034 - 480 0.021 14.0 0.0 1 1 8.4e-05 0.052 12.7 0.0 18 58 276 335 263 436 0.63 NB-ARC domain AAA_23 PF13476.6 200 CP023447_00034 - 480 0.026 15.0 13.2 1 2 0.012 7.6 7.0 7.5 89 175 92 198 11 240 0.60 AAA domain AAA_23 PF13476.6 200 CP023447_00034 - 480 0.026 15.0 13.2 2 2 0.00067 0.42 11.1 0.3 19 41 278 300 263 415 0.85 AAA domain ParA PF10609.9 246 CP023447_00034 - 480 0.038 13.4 0.1 1 2 2.6 1.6e+03 -1.7 0.0 152 190 221 260 210 264 0.69 NUBPL iron-transfer P-loop NTPase ParA PF10609.9 246 CP023447_00034 - 480 0.038 13.4 0.1 2 2 0.00026 0.16 11.4 0.0 3 43 277 319 275 355 0.85 NUBPL iron-transfer P-loop NTPase PhoH PF02562.16 205 CP023447_00034 - 480 0.045 13.2 0.0 1 1 0.00016 0.097 12.1 0.0 15 60 274 320 269 368 0.74 PhoH-like protein Roc PF08477.13 120 CP023447_00034 - 480 0.045 14.0 0.6 1 2 0.47 2.9e+02 1.7 0.1 17 46 126 155 121 166 0.78 Ras of Complex, Roc, domain of DAPkinase Roc PF08477.13 120 CP023447_00034 - 480 0.045 14.0 0.6 2 2 0.0017 1 9.6 0.0 2 27 281 306 279 341 0.66 Ras of Complex, Roc, domain of DAPkinase AAA_14 PF13173.6 131 CP023447_00034 - 480 0.047 13.7 0.2 1 2 1.9 1.2e+03 -0.5 0.7 22 75 87 148 81 194 0.50 AAA domain AAA_14 PF13173.6 131 CP023447_00034 - 480 0.047 13.7 0.2 2 2 7.7e-05 0.047 13.7 0.2 2 47 278 325 277 398 0.68 AAA domain VirE PF05272.11 198 CP023447_00034 - 480 0.049 13.4 0.1 1 2 0.00036 0.22 11.2 0.0 46 79 272 306 231 320 0.78 Virulence-associated protein E VirE PF05272.11 198 CP023447_00034 - 480 0.049 13.4 0.1 2 2 3.6 2.2e+03 -1.9 0.0 140 181 358 399 341 409 0.70 Virulence-associated protein E NACHT PF05729.12 166 CP023447_00034 - 480 0.056 13.4 0.1 1 1 0.00021 0.13 12.2 0.1 2 28 280 306 279 313 0.87 NACHT domain AAA PF00004.29 132 CP023447_00034 - 480 0.061 13.8 0.5 1 1 0.00025 0.16 12.4 0.5 1 22 281 302 281 384 0.70 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 192 CP023447_00034 - 480 0.062 13.0 0.1 1 1 0.00017 0.11 12.2 0.1 17 39 277 299 271 318 0.81 AAA domain AAA_19 PF13245.6 146 CP023447_00034 - 480 0.08 13.3 0.2 1 1 0.00037 0.23 11.8 0.2 9 68 277 337 271 402 0.66 AAA domain AAA_18 PF13238.6 130 CP023447_00034 - 480 0.097 13.2 0.1 1 1 0.00061 0.38 11.3 0.1 2 84 282 367 281 395 0.60 AAA domain HPPK PF01288.20 112 CP023447_00035 - 157 2e-20 73.4 0.0 1 1 1.3e-24 2.3e-20 73.2 0.0 2 108 32 155 31 157 0.91 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DHquinase_II PF01220.19 138 CP023447_00036 - 159 1e-57 193.7 0.3 1 1 2e-61 1.2e-57 193.4 0.3 1 135 2 136 2 139 0.98 Dehydroquinase class II Enoyl_reductase PF12241.8 236 CP023447_00036 - 159 0.016 14.5 0.0 1 1 3.7e-06 0.022 14.1 0.0 6 65 20 81 16 114 0.78 Trans-2-enoyl-CoA reductase catalytic region PCuAC PF04314.13 109 CP023447_00036 - 159 0.035 13.9 0.1 1 2 0.0064 38 4.1 0.2 50 70 21 41 2 47 0.77 Copper chaperone PCu(A)C PCuAC PF04314.13 109 CP023447_00036 - 159 0.035 13.9 0.1 2 2 0.00042 2.5 7.9 0.0 40 86 93 139 71 153 0.76 Copper chaperone PCu(A)C Amidohydro_1 PF01979.20 344 CP023447_00037 - 409 5.3e-61 206.8 0.0 1 1 6.9e-65 6.2e-61 206.6 0.0 1 343 56 406 56 407 0.94 Amidohydrolase family Amidohydro_3 PF07969.11 473 CP023447_00037 - 409 1.3e-07 31.5 0.0 1 3 0.0011 10 5.5 0.1 7 21 54 68 53 81 0.83 Amidohydrolase family Amidohydro_3 PF07969.11 473 CP023447_00037 - 409 1.3e-07 31.5 0.0 2 3 0.00036 3.2 7.1 0.0 154 216 97 169 85 203 0.79 Amidohydrolase family Amidohydro_3 PF07969.11 473 CP023447_00037 - 409 1.3e-07 31.5 0.0 3 3 1.8e-06 0.016 14.7 0.0 411 447 344 379 291 391 0.69 Amidohydrolase family Peptidase_S49 PF01343.18 154 CP023447_00038 - 298 6.8e-53 178.8 0.2 1 1 1.5e-56 8.7e-53 178.4 0.2 2 153 102 253 101 254 0.99 Peptidase family S49 CLP_protease PF00574.23 182 CP023447_00038 - 298 5.5e-06 26.4 0.3 1 1 1.2e-08 7e-05 22.8 0.3 10 99 42 130 38 241 0.82 Clp protease SDH_sah PF01972.16 286 CP023447_00038 - 298 0.00055 19.0 0.3 1 1 1.5e-07 0.0009 18.3 0.1 75 156 57 143 51 235 0.80 Serine dehydrogenase proteinase GSH-S_ATP PF02955.16 175 CP023447_00039 - 343 0.056 12.8 0.0 1 2 0.11 1e+03 -1.0 0.0 31 52 140 161 121 170 0.80 Prokaryotic glutathione synthetase, ATP-grasp domain GSH-S_ATP PF02955.16 175 CP023447_00039 - 343 0.056 12.8 0.0 2 2 2.6e-05 0.24 10.8 0.0 62 107 199 243 185 262 0.78 Prokaryotic glutathione synthetase, ATP-grasp domain DUF4821 PF16092.5 263 CP023447_00039 - 343 0.084 12.5 0.0 1 1 1.5e-05 0.13 11.9 0.0 179 238 256 322 248 329 0.83 Domain of unknown function (DUF4821) Zn_ribbon_SprT PF17283.2 38 CP023447_00040 - 116 0.0036 17.2 1.1 1 1 3.6e-07 0.0064 16.4 1.1 2 36 68 108 67 109 0.93 SprT-like zinc ribbon domain Hemerythrin PF01814.23 131 CP023447_00041 - 98 4.9e-06 27.2 1.4 1 1 1.1e-09 6.3e-06 26.8 1.4 4 64 19 79 16 87 0.86 Hemerythrin HHE cation binding domain LANC_like PF05147.13 352 CP023447_00041 - 98 0.022 13.3 0.1 1 1 4.7e-06 0.028 13.0 0.1 177 214 38 74 35 85 0.83 Lanthionine synthetase C-like protein RHH_7 PF16777.5 74 CP023447_00041 - 98 0.046 14.1 0.1 1 1 1.4e-05 0.085 13.3 0.1 40 70 22 52 9 55 0.90 Transcriptional regulator, RHH-like, CopG LUD_dom PF02589.15 189 CP023447_00042 - 218 1.3e-29 103.3 0.2 1 1 1.9e-33 1.7e-29 102.9 0.2 2 188 48 217 47 218 0.94 LUD domain AAA_5 PF07728.14 138 CP023447_00042 - 218 0.068 13.2 0.1 1 1 2.1e-05 0.19 11.7 0.1 31 109 63 145 6 176 0.67 AAA domain (dynein-related subfamily) LUD_dom PF02589.15 189 CP023447_00043 - 479 7.8e-52 175.8 0.2 1 2 9.1 9.1e+03 -3.8 0.1 52 83 25 54 15 57 0.57 LUD domain LUD_dom PF02589.15 189 CP023447_00043 - 479 7.8e-52 175.8 0.2 2 2 1.3e-54 1.3e-51 175.1 0.0 3 188 70 292 68 293 0.99 LUD domain DUF3390 PF11870.8 88 CP023447_00043 - 479 9.3e-17 61.2 0.0 1 1 1.9e-19 1.9e-16 60.2 0.0 1 87 384 475 384 476 0.97 Domain of unknown function (DUF3390) Fer4_8 PF13183.6 65 CP023447_00043 - 479 1.1e-11 44.9 1.5 1 1 3.1e-14 3.1e-11 43.6 1.5 2 65 309 376 308 376 0.80 4Fe-4S dicluster domain Fer4_17 PF13534.6 61 CP023447_00043 - 479 4.6e-09 36.7 2.0 1 1 1.1e-11 1.1e-08 35.5 2.0 1 60 311 376 311 377 0.81 4Fe-4S dicluster domain Fer4_10 PF13237.6 56 CP023447_00043 - 479 1e-08 35.1 8.1 1 2 4.4e-11 4.4e-08 33.1 7.6 4 56 307 373 304 373 0.96 4Fe-4S dicluster domain Fer4_10 PF13237.6 56 CP023447_00043 - 479 1e-08 35.1 8.1 2 2 2.2e-05 0.022 14.9 2.1 7 24 360 382 354 408 0.74 4Fe-4S dicluster domain Fer4 PF00037.27 24 CP023447_00043 - 479 1.8e-08 33.9 11.7 1 2 2.7e-07 0.00027 20.6 2.3 7 20 311 324 306 325 0.90 4Fe-4S binding domain Fer4 PF00037.27 24 CP023447_00043 - 479 1.8e-08 33.9 11.7 2 2 2.1e-06 0.0021 17.8 2.2 7 21 361 375 358 377 0.88 4Fe-4S binding domain Fer4_7 PF12838.7 52 CP023447_00043 - 479 5.7e-08 33.2 4.6 1 1 1.4e-10 1.4e-07 32.0 4.6 1 52 311 376 311 376 0.69 4Fe-4S dicluster domain Fer4_2 PF12797.7 22 CP023447_00043 - 479 1e-06 28.5 11.3 1 2 2.9e-07 0.00029 20.8 1.8 4 21 306 323 302 324 0.89 4Fe-4S binding domain Fer4_2 PF12797.7 22 CP023447_00043 - 479 1e-06 28.5 11.3 2 2 0.00015 0.15 12.2 2.3 8 21 360 373 357 374 0.89 4Fe-4S binding domain Fer4_9 PF13187.6 51 CP023447_00043 - 479 4.8e-06 26.6 5.7 1 2 4.6e-05 0.045 13.9 1.8 34 48 310 324 291 328 0.71 4Fe-4S dicluster domain Fer4_9 PF13187.6 51 CP023447_00043 - 479 4.8e-06 26.6 5.7 2 2 6e-08 6e-05 23.1 6.7 1 49 311 375 311 377 0.87 4Fe-4S dicluster domain Fer4_6 PF12837.7 24 CP023447_00043 - 479 1.8e-05 24.6 11.2 1 2 4.8e-05 0.048 13.8 2.1 8 21 311 324 307 329 0.89 4Fe-4S binding domain Fer4_6 PF12837.7 24 CP023447_00043 - 479 1.8e-05 24.6 11.2 2 2 1.8e-05 0.018 15.1 1.9 9 23 362 376 359 377 0.91 4Fe-4S binding domain Fer4_21 PF14697.6 59 CP023447_00043 - 479 4.7e-05 23.4 4.6 1 2 5.1e-05 0.051 13.7 0.1 39 57 310 328 287 335 0.76 4Fe-4S dicluster domain Fer4_21 PF14697.6 59 CP023447_00043 - 479 4.7e-05 23.4 4.6 2 2 0.00048 0.48 10.6 1.0 40 54 361 375 347 379 0.88 4Fe-4S dicluster domain Fer4_20 PF14691.6 113 CP023447_00043 - 479 0.00016 21.4 2.9 1 2 6e-05 0.06 13.1 0.1 10 44 298 330 290 337 0.80 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_20 PF14691.6 113 CP023447_00043 - 479 0.00016 21.4 2.9 2 2 0.0024 2.4 7.9 0.5 24 55 362 391 359 405 0.85 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.7 17 CP023447_00043 - 479 0.00031 21.0 11.3 1 2 5.4e-07 0.00053 20.3 1.3 3 16 311 324 309 333 0.93 4Fe-4S binding domain Fer4_4 PF12800.7 17 CP023447_00043 - 479 0.00031 21.0 11.3 2 2 0.047 47 4.8 3.0 4 17 362 375 359 375 0.91 4Fe-4S binding domain Fer4_16 PF13484.6 67 CP023447_00043 - 479 0.0012 19.7 11.6 1 3 0.00071 0.71 10.9 2.4 1 14 311 324 271 325 0.71 4Fe-4S double cluster binding domain Fer4_16 PF13484.6 67 CP023447_00043 - 479 0.0012 19.7 11.6 2 3 5e-05 0.05 14.5 11.9 1 66 311 374 311 375 0.85 4Fe-4S double cluster binding domain Fer4_16 PF13484.6 67 CP023447_00043 - 479 0.0012 19.7 11.6 3 3 0.00066 0.65 11.0 3.2 1 16 361 376 361 393 0.87 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 96 CP023447_00043 - 479 0.0022 18.8 5.7 1 2 0.0012 1.2 10.1 0.2 69 94 299 324 292 326 0.74 4Fe-4S dicluster domain Fer4_22 PF17179.4 96 CP023447_00043 - 479 0.0022 18.8 5.7 2 2 0.0011 1.1 10.1 1.0 80 96 360 376 352 376 0.88 4Fe-4S dicluster domain Fer4_3 PF12798.7 15 CP023447_00043 - 479 0.0029 18.4 16.2 1 2 0.00023 0.23 12.5 3.8 1 13 312 324 312 326 0.94 4Fe-4S binding domain Fer4_3 PF12798.7 15 CP023447_00043 - 479 0.0029 18.4 16.2 2 2 0.00053 0.53 11.3 4.6 1 13 362 374 362 376 0.93 4Fe-4S binding domain Fer4_18 PF13746.6 114 CP023447_00043 - 479 0.026 14.7 5.7 1 2 0.002 2 8.6 0.1 56 74 307 325 289 334 0.76 4Fe-4S dicluster domain Fer4_18 PF13746.6 114 CP023447_00043 - 479 0.026 14.7 5.7 2 2 0.0059 5.8 7.1 1.3 60 79 361 380 353 392 0.81 4Fe-4S dicluster domain Ribosomal_L5_C PF00673.21 94 CP023447_00043 - 479 0.043 14.0 0.0 1 1 9.7e-05 0.096 12.9 0.0 12 72 27 83 12 113 0.79 ribosomal L5P family C-terminus CCG PF02754.16 85 CP023447_00044 - 246 8.5e-31 106.0 0.4 1 2 1.1e-15 9.7e-12 44.9 0.0 1 84 5 85 5 86 0.94 Cysteine-rich domain CCG PF02754.16 85 CP023447_00044 - 246 8.5e-31 106.0 0.4 2 2 3.1e-20 2.7e-16 59.5 0.1 1 85 133 218 133 218 0.97 Cysteine-rich domain HTH_11 PF08279.12 55 CP023447_00044 - 246 0.029 14.3 0.1 1 2 0.0028 25 4.9 0.0 30 51 19 40 18 42 0.86 HTH domain HTH_11 PF08279.12 55 CP023447_00044 - 246 0.029 14.3 0.1 2 2 0.00081 7.3 6.6 0.0 26 48 185 209 182 225 0.83 HTH domain Lactate_perm PF02652.14 522 CP023447_00045 - 560 1.2e-205 684.2 48.6 1 1 8.1e-210 1.4e-205 683.9 48.6 1 521 19 545 19 546 0.98 L-lactate permease CDtoxinA PF03498.14 150 CP023447_00046 - 189 1.1e-49 167.9 0.0 1 1 1.4e-53 1.2e-49 167.7 0.0 1 150 29 187 29 187 0.99 Cytolethal distending toxin A/C domain DUF2141 PF09912.9 112 CP023447_00046 - 189 0.069 13.1 0.0 1 1 1e-05 0.092 12.7 0.0 39 79 85 125 30 131 0.84 Uncharacterized protein conserved in bacteria (DUF2141) Exo_endo_phos PF03372.23 233 CP023447_00047 - 265 3.4e-18 66.0 0.2 1 1 2.7e-22 4.9e-18 65.5 0.2 1 233 24 257 24 257 0.78 Endonuclease/Exonuclease/phosphatase family CDtoxinA PF03498.14 150 CP023447_00048 - 268 1e-45 155.0 0.1 1 1 2.4e-49 1.4e-45 154.5 0.1 2 150 116 260 115 260 0.98 Cytolethal distending toxin A/C domain RicinB_lectin_2 PF14200.6 89 CP023447_00048 - 268 1.4e-06 28.9 0.5 1 2 6.2e-10 3.7e-06 27.6 0.1 4 74 153 218 150 223 0.85 Ricin-type beta-trefoil lectin domain-like RicinB_lectin_2 PF14200.6 89 CP023447_00048 - 268 1.4e-06 28.9 0.5 2 2 1.1 6.4e+03 -2.0 0.0 46 55 243 252 236 255 0.69 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.22 127 CP023447_00048 - 268 1.6e-05 25.1 0.4 1 1 1.2e-08 6.9e-05 23.1 0.4 4 85 165 251 162 255 0.65 Ricin-type beta-trefoil lectin domain DUF4492 PF14899.6 63 CP023447_00049 - 89 1.7e-25 88.7 8.4 1 2 0.41 7.3e+03 -3.0 0.2 32 40 4 12 2 18 0.65 Domain of unknown function (DUF4492) DUF4492 PF14899.6 63 CP023447_00049 - 89 1.7e-25 88.7 8.4 2 2 9.4e-30 1.7e-25 88.7 8.4 2 63 24 85 23 85 0.98 Domain of unknown function (DUF4492) Cyt_bd_oxida_I PF01654.17 418 CP023447_00050 - 520 1.6e-171 570.5 23.0 1 1 1.2e-175 2.1e-171 570.2 23.0 1 417 9 504 9 505 0.98 Cytochrome bd terminal oxidase subunit I Cyt_bd_oxida_II PF02322.15 303 CP023447_00051 - 374 4.4e-74 249.6 31.0 1 1 8.4e-78 5e-74 249.4 31.0 1 303 10 357 10 357 0.87 Cytochrome bd terminal oxidase subunit II TrbL PF04610.14 215 CP023447_00051 - 374 0.002 17.9 11.8 1 4 2.2 1.3e+04 -4.4 4.0 95 119 55 79 17 104 0.57 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP023447_00051 - 374 0.002 17.9 11.8 2 4 0.092 5.5e+02 0.1 0.1 85 116 107 144 100 151 0.65 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP023447_00051 - 374 0.002 17.9 11.8 3 4 0.48 2.9e+03 -2.2 2.3 134 153 215 234 207 246 0.83 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP023447_00051 - 374 0.002 17.9 11.8 4 4 3.3e-07 0.002 17.9 11.8 118 206 247 341 236 354 0.79 TrbL/VirB6 plasmid conjugal transfer protein DUF334 PF03904.13 230 CP023447_00051 - 374 0.055 13.0 0.9 1 1 2.8e-05 0.17 11.4 0.9 148 219 283 354 276 360 0.76 Domain of unknown function (DUF334) Asp_Glu_race PF01177.22 224 CP023447_00053 - 231 2e-56 191.4 2.4 1 1 5.1e-60 2.3e-56 191.2 2.4 1 220 7 220 7 224 0.97 Asp/Glu/Hydantoin racemase Pantoate_transf PF02548.15 259 CP023447_00053 - 231 0.00035 20.0 0.4 1 2 7.2e-07 0.0032 16.9 0.1 145 205 46 107 35 145 0.80 Ketopantoate hydroxymethyltransferase Pantoate_transf PF02548.15 259 CP023447_00053 - 231 0.00035 20.0 0.4 2 2 0.045 2e+02 1.2 0.0 156 184 170 198 162 205 0.84 Ketopantoate hydroxymethyltransferase PA PF02225.22 89 CP023447_00053 - 231 0.022 14.7 0.0 1 2 0.0015 6.6 6.8 0.0 40 89 69 112 26 112 0.77 PA domain PA PF02225.22 89 CP023447_00053 - 231 0.022 14.7 0.0 2 2 0.0026 12 6.0 0.0 39 54 181 206 141 227 0.79 PA domain AAA_33 PF13671.6 143 CP023447_00053 - 231 0.083 13.1 0.1 1 1 3.1e-05 0.14 12.3 0.1 47 116 52 118 15 128 0.77 AAA domain UDG PF03167.19 155 CP023447_00054 - 231 1.1e-20 74.2 0.1 1 1 8.5e-25 1.5e-20 73.7 0.1 6 151 64 217 59 221 0.87 Uracil DNA glycosylase superfamily Lyase_1 PF00206.20 312 CP023447_00055 - 468 8.3e-102 340.8 0.0 1 1 1.7e-105 1e-101 340.5 0.0 2 312 12 342 11 342 0.98 Lyase FumaraseC_C PF10415.9 54 CP023447_00055 - 468 4.3e-24 84.7 0.1 1 1 2.3e-27 1.3e-23 83.1 0.1 1 53 408 460 408 461 0.98 Fumarase C C-terminus SH3_17 PF18350.1 53 CP023447_00055 - 468 0.088 12.7 0.0 1 1 4.7e-05 0.28 11.1 0.0 10 28 394 413 386 422 0.80 Restriction endonuclease SH3 domain DcuA_DcuB PF03605.14 368 CP023447_00056 - 445 3.1e-134 447.5 28.5 1 1 2.2e-138 3.9e-134 447.2 28.5 1 367 8 370 8 371 0.96 Anaerobic c4-dicarboxylate membrane transporter TPR_2 PF07719.17 34 CP023447_00057 - 453 0.0002 21.2 7.6 1 4 0.27 2.4e+03 -0.9 0.0 6 24 63 81 62 87 0.81 Tetratricopeptide repeat TPR_2 PF07719.17 34 CP023447_00057 - 453 0.0002 21.2 7.6 2 4 2.3e-05 0.21 11.8 0.3 4 29 128 153 126 155 0.91 Tetratricopeptide repeat TPR_2 PF07719.17 34 CP023447_00057 - 453 0.0002 21.2 7.6 3 4 0.07 6.3e+02 0.9 0.3 18 31 156 169 154 172 0.82 Tetratricopeptide repeat TPR_2 PF07719.17 34 CP023447_00057 - 453 0.0002 21.2 7.6 4 4 0.00014 1.2 9.4 0.1 11 34 223 246 213 246 0.86 Tetratricopeptide repeat HZS_alpha PF18582.1 99 CP023447_00057 - 453 0.0024 18.3 0.0 1 2 0.26 2.3e+03 -0.9 0.0 33 72 99 138 74 146 0.73 Hydrazine synthase alpha subunit middle domain HZS_alpha PF18582.1 99 CP023447_00057 - 453 0.0024 18.3 0.0 2 2 1.7e-06 0.016 15.7 0.0 42 90 399 447 355 450 0.79 Hydrazine synthase alpha subunit middle domain DUF1425 PF07233.12 92 CP023447_00058 - 131 7.2e-08 32.2 0.0 1 1 4.9e-12 8.8e-08 31.9 0.0 20 91 48 118 29 119 0.84 Protein of unknown function (DUF1425) LpoB PF13036.6 147 CP023447_00059 - 207 6.4e-45 152.7 0.1 1 1 4.4e-49 8e-45 152.4 0.1 1 147 47 196 47 196 0.97 Peptidoglycan-synthase activator LpoB CTP_synth_N PF06418.14 265 CP023447_00060 - 445 0.0094 15.3 1.9 1 2 0.0011 20 4.4 0.1 76 125 187 236 184 251 0.86 CTP synthase N-terminus CTP_synth_N PF06418.14 265 CP023447_00060 - 445 0.0094 15.3 1.9 2 2 2.2e-05 0.4 10.0 0.3 76 128 319 373 300 383 0.86 CTP synthase N-terminus CsgG PF03783.14 210 CP023447_00061 - 400 1.9e-06 27.3 3.0 1 2 0.15 9e+02 -1.0 0.0 183 201 40 59 16 68 0.62 Curli production assembly/transport component CsgG CsgG PF03783.14 210 CP023447_00061 - 400 1.9e-06 27.3 3.0 2 2 3.6e-10 2.2e-06 27.1 1.0 30 165 146 274 102 298 0.81 Curli production assembly/transport component CsgG LPP20 PF02169.16 97 CP023447_00061 - 400 0.0011 19.3 6.6 1 2 1.8e-07 0.0011 19.3 6.6 9 95 24 115 19 116 0.90 LPP20 lipoprotein LPP20 PF02169.16 97 CP023447_00061 - 400 0.0011 19.3 6.6 2 2 0.094 5.6e+02 1.0 0.2 26 67 269 306 252 315 0.69 LPP20 lipoprotein AAA_assoc_2 PF16193.5 81 CP023447_00061 - 400 0.0058 16.9 0.2 1 2 4.4e-05 0.26 11.6 0.1 21 79 132 190 124 190 0.86 AAA C-terminal domain AAA_assoc_2 PF16193.5 81 CP023447_00061 - 400 0.0058 16.9 0.2 2 2 0.036 2.1e+02 2.3 0.0 4 40 267 303 264 337 0.77 AAA C-terminal domain Ribosomal_L21p PF00829.21 101 CP023447_00062 - 102 1.1e-31 109.0 5.4 1 1 1.4e-35 1.2e-31 108.9 5.4 1 101 1 100 1 100 0.97 Ribosomal prokaryotic L21 protein DUF5599 PF18141.1 93 CP023447_00062 - 102 0.028 14.6 0.1 1 1 4.7e-06 0.043 14.1 0.1 25 64 5 44 1 72 0.84 Domain of unknown function (DUF5599) Ribosomal_L27 PF01016.19 79 CP023447_00063 - 84 3.7e-38 129.4 5.0 1 1 2.3e-42 4.1e-38 129.3 5.0 1 79 2 81 2 81 0.98 Ribosomal L27 protein GTP1_OBG PF01018.22 155 CP023447_00064 - 345 1.1e-54 184.2 7.9 1 1 3.3e-58 1.5e-54 183.8 7.9 1 155 3 157 3 157 0.99 GTP1/OBG MMR_HSR1 PF01926.23 114 CP023447_00064 - 345 1.3e-21 76.8 0.0 1 1 4.6e-25 2.1e-21 76.2 0.0 1 101 160 267 160 316 0.88 50S ribosome-binding GTPase FeoB_N PF02421.18 156 CP023447_00064 - 345 2.5e-09 36.9 0.0 1 2 1.1e-12 5.1e-09 35.8 0.0 3 57 161 216 159 262 0.90 Ferrous iron transport protein B FeoB_N PF02421.18 156 CP023447_00064 - 345 2.5e-09 36.9 0.0 2 2 1 4.5e+03 -3.0 0.0 137 152 315 330 287 332 0.56 Ferrous iron transport protein B MeaB PF03308.16 267 CP023447_00064 - 345 0.049 12.6 0.0 1 2 6.6e-05 0.3 10.0 0.0 32 49 161 178 156 184 0.89 Methylmalonyl Co-A mutase-associated GTPase MeaB MeaB PF03308.16 267 CP023447_00064 - 345 0.049 12.6 0.0 2 2 0.1 4.5e+02 -0.4 0.0 200 232 309 341 275 344 0.59 Methylmalonyl Co-A mutase-associated GTPase MeaB AA_kinase PF00696.28 241 CP023447_00065 - 251 5.3e-37 127.7 0.6 1 1 3.4e-41 6.1e-37 127.5 0.6 1 239 2 226 2 228 0.93 Amino acid kinase family Formyl_trans_N PF00551.19 181 CP023447_00066 - 305 3e-35 121.6 0.0 1 1 5.2e-39 4.7e-35 121.0 0.0 1 164 2 165 2 181 0.94 Formyl transferase Formyl_trans_C PF02911.18 100 CP023447_00066 - 305 5.1e-20 71.6 0.0 1 1 1e-23 9.1e-20 70.8 0.0 1 99 202 296 202 297 0.97 Formyl transferase, C-terminal domain BPL_LplA_LipB PF03099.19 131 CP023447_00067 - 217 3.8e-13 49.5 0.0 1 1 5.7e-17 5.1e-13 49.1 0.0 3 117 13 123 11 136 0.86 Biotin/lipoate A/B protein ligase family Ubiquitin_4 PF18036.1 89 CP023447_00067 - 217 0.034 14.2 0.0 1 1 8e-06 0.072 13.1 0.0 18 64 138 182 131 191 0.87 Ubiquitin-like domain AAA_31 PF13614.6 177 CP023447_00068 - 261 1.3e-65 220.7 3.2 1 2 1.1e-68 1.3e-65 220.7 3.2 2 177 3 180 2 180 0.97 AAA domain AAA_31 PF13614.6 177 CP023447_00068 - 261 1.3e-65 220.7 3.2 2 2 3.3 4e+03 -2.4 0.0 52 74 203 213 187 232 0.38 AAA domain CbiA PF01656.23 128 CP023447_00068 - 261 3.7e-26 91.7 0.2 1 1 4.4e-29 5.2e-26 91.2 0.2 1 128 5 239 5 239 0.96 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 262 CP023447_00068 - 261 2.2e-14 53.4 0.9 1 1 3e-16 3.6e-13 49.4 0.5 2 153 4 173 3 182 0.72 ATPase MipZ ParA PF10609.9 246 CP023447_00068 - 261 1.6e-12 47.5 0.2 1 2 1.7e-11 2e-08 34.0 0.0 3 41 2 40 1 62 0.93 NUBPL iron-transfer P-loop NTPase ParA PF10609.9 246 CP023447_00068 - 261 1.6e-12 47.5 0.2 2 2 9.9e-05 0.12 11.8 0.1 101 244 111 258 88 260 0.69 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 234 CP023447_00068 - 261 2e-10 40.6 0.0 1 1 2.8e-13 3.4e-10 39.8 0.0 3 146 4 151 1 161 0.88 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 271 CP023447_00068 - 261 3.8e-09 36.4 0.5 1 2 2.4e-10 2.8e-07 30.2 0.0 7 44 10 47 4 77 0.86 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_NifH PF00142.18 271 CP023447_00068 - 261 3.8e-09 36.4 0.5 2 2 0.014 17 4.7 0.1 112 244 117 259 101 261 0.65 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 305 CP023447_00068 - 261 3.8e-08 32.9 0.3 1 2 1e-09 1.2e-06 27.9 0.0 8 42 10 44 3 59 0.90 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 CP023447_00068 - 261 3.8e-08 32.9 0.3 2 2 0.036 44 3.1 0.1 122 137 118 133 90 246 0.82 Anion-transporting ATPase VirC1 PF07015.11 231 CP023447_00068 - 261 6.2e-05 22.4 0.2 1 1 1.5e-07 0.00018 20.9 0.1 2 41 3 42 2 128 0.86 VirC1 protein SRP54 PF00448.22 196 CP023447_00068 - 261 0.0032 17.1 1.2 1 2 1.5e-05 0.018 14.7 0.2 11 40 13 42 4 81 0.85 SRP54-type protein, GTPase domain SRP54 PF00448.22 196 CP023447_00068 - 261 0.0032 17.1 1.2 2 2 0.2 2.4e+02 1.2 0.1 62 91 100 128 72 131 0.73 SRP54-type protein, GTPase domain DUF1027 PF06265.11 85 CP023447_00068 - 261 0.028 14.4 0.1 1 2 0.0023 2.7 8.0 0.0 18 39 106 127 94 145 0.84 Protein of unknown function (DUF1027) DUF1027 PF06265.11 85 CP023447_00068 - 261 0.028 14.4 0.1 2 2 0.043 52 3.9 0.0 42 59 175 192 168 213 0.67 Protein of unknown function (DUF1027) DUF1906 PF08924.11 198 CP023447_00068 - 261 0.051 13.7 0.0 1 2 0.1 1.2e+02 2.7 0.0 63 100 10 45 5 49 0.86 Domain of unknown function (DUF1906) DUF1906 PF08924.11 198 CP023447_00068 - 261 0.051 13.7 0.0 2 2 0.0012 1.5 9.0 0.0 94 150 152 214 138 232 0.73 Domain of unknown function (DUF1906) AAA_24 PF13479.6 197 CP023447_00068 - 261 0.063 13.0 0.1 1 1 0.00011 0.13 12.0 0.1 11 82 12 137 10 154 0.75 AAA domain CLP1_P PF16575.5 188 CP023447_00068 - 261 0.069 12.9 0.1 1 2 0.00014 0.17 11.6 0.0 4 35 13 44 11 50 0.91 mRNA cleavage and polyadenylation factor CLP1 P-loop CLP1_P PF16575.5 188 CP023447_00068 - 261 0.069 12.9 0.1 2 2 4.8 5.7e+03 -3.1 0.0 77 99 192 214 186 223 0.59 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 194 CP023447_00068 - 261 0.088 12.4 0.1 1 2 0.00033 0.39 10.2 0.0 41 59 11 30 4 55 0.80 AAA domain AAA_25 PF13481.6 194 CP023447_00068 - 261 0.088 12.4 0.1 2 2 0.66 7.9e+02 -0.5 0.0 131 150 112 128 85 150 0.73 AAA domain MeaB PF03308.16 267 CP023447_00068 - 261 0.088 11.8 0.1 1 1 0.00012 0.14 11.1 0.1 39 74 13 48 4 51 0.93 Methylmalonyl Co-A mutase-associated GTPase MeaB ParBc PF02195.18 90 CP023447_00069 - 278 5.4e-26 90.7 0.6 1 2 4e-29 3.6e-25 88.1 0.1 1 90 32 121 32 121 0.99 ParB-like nuclease domain ParBc PF02195.18 90 CP023447_00069 - 278 5.4e-26 90.7 0.6 2 2 0.14 1.3e+03 -0.2 0.0 5 31 219 245 215 251 0.76 ParB-like nuclease domain HTH_ParB PF17762.1 52 CP023447_00069 - 278 1.1e-14 54.0 0.6 1 3 0.059 5.3e+02 0.5 0.0 28 42 112 127 103 128 0.78 HTH domain found in ParB protein HTH_ParB PF17762.1 52 CP023447_00069 - 278 1.1e-14 54.0 0.6 2 3 1.2 1.1e+04 -3.7 0.1 34 41 142 149 138 153 0.62 HTH domain found in ParB protein HTH_ParB PF17762.1 52 CP023447_00069 - 278 1.1e-14 54.0 0.6 3 3 1.2e-18 1.1e-14 54.0 0.6 3 52 173 221 172 221 0.96 HTH domain found in ParB protein ATP-synt_B PF00430.18 132 CP023447_00070 - 141 2.3e-10 40.7 10.5 1 1 8.6e-14 3.1e-10 40.3 10.5 3 115 11 123 9 137 0.95 ATP synthase B/B' CF(0) PMT2_N PF17987.1 125 CP023447_00070 - 141 0.034 14.3 0.7 1 1 1.3e-05 0.046 13.9 0.7 16 80 50 112 35 133 0.78 Phosphoethanolamine N-methyltransferase 2 N-terminal DUF948 PF06103.11 89 CP023447_00070 - 141 0.041 14.1 1.5 1 2 2.7e-05 0.095 13.0 0.8 5 73 13 81 9 108 0.86 Bacterial protein of unknown function (DUF948) DUF948 PF06103.11 89 CP023447_00070 - 141 0.041 14.1 1.5 2 2 0.7 2.5e+03 -1.2 0.0 32 55 113 136 90 139 0.67 Bacterial protein of unknown function (DUF948) PAGK PF15284.6 64 CP023447_00070 - 141 0.053 13.4 0.0 1 1 2.9e-05 0.1 12.5 0.0 6 26 15 35 10 53 0.79 Phage-encoded virulence factor DUF5119 PF17145.4 196 CP023447_00070 - 141 0.067 13.1 0.1 1 1 2.2e-05 0.08 12.9 0.1 51 105 40 96 34 122 0.78 Domain of unknown function (DUF5119) ATP-synt_B PF00430.18 132 CP023447_00071 - 62 0.008 16.3 0.2 1 2 0.69 1.2e+04 -3.8 0.4 10 18 5 13 3 17 0.44 ATP synthase B/B' CF(0) ATP-synt_B PF00430.18 132 CP023447_00071 - 62 0.008 16.3 0.2 2 2 4.4e-07 0.008 16.3 0.2 5 31 30 56 27 59 0.91 ATP synthase B/B' CF(0) V-ATPase_G_2 PF16999.5 104 CP023447_00072 - 89 0.00022 21.6 2.8 1 1 4.9e-08 0.00022 21.6 2.8 19 75 2 62 1 88 0.85 Vacuolar (H+)-ATPase G subunit Plasmid_parti PF01672.16 85 CP023447_00072 - 89 0.0019 18.8 0.8 1 1 6.1e-07 0.0027 18.3 0.8 38 82 26 70 4 72 0.90 Putative plasmid partition protein ATP-synt_B PF00430.18 132 CP023447_00072 - 89 0.0036 17.4 3.6 1 1 9.3e-07 0.0042 17.2 3.6 58 102 2 46 1 64 0.88 ATP synthase B/B' CF(0) DUF4954 PF16314.5 655 CP023447_00072 - 89 0.011 14.0 1.3 1 1 2.4e-06 0.011 13.9 1.3 508 579 13 85 2 89 0.90 Domain of unknown function (DUF4954) OSCP PF00213.18 172 CP023447_00073 - 173 3.3e-22 79.4 3.0 1 1 2.5e-26 4.5e-22 79.0 3.0 1 142 5 139 5 154 0.95 ATP synthase delta (OSCP) subunit ATP-synt_ab PF00006.25 213 CP023447_00074 - 501 1.4e-76 256.9 0.1 1 1 8.2e-80 2.1e-76 256.3 0.1 1 213 149 364 149 364 0.98 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.27 126 CP023447_00074 - 501 6.3e-51 172.0 0.6 1 1 4.1e-54 1e-50 171.2 0.6 1 126 371 496 371 496 1.00 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.23 69 CP023447_00074 - 501 3e-17 62.9 1.7 1 1 3.6e-20 9.3e-17 61.3 1.7 3 68 26 91 24 92 0.97 ATP synthase alpha/beta family, beta-barrel domain ATPase PF06745.13 231 CP023447_00074 - 501 2.2e-05 23.9 1.4 1 2 5.3e-08 0.00013 21.4 0.3 2 70 147 212 146 220 0.90 KaiC ATPase PF06745.13 231 CP023447_00074 - 501 2.2e-05 23.9 1.4 2 2 0.16 4.1e+02 0.1 0.0 85 122 463 500 453 501 0.73 KaiC Arginosuc_synth PF00764.19 388 CP023447_00074 - 501 0.046 13.0 0.2 1 1 3.2e-05 0.082 12.2 0.2 10 57 176 223 173 232 0.93 Arginosuccinate synthase HAS-barrel PF09378.10 92 CP023447_00074 - 501 0.061 13.5 0.1 1 2 9.9e-05 0.25 11.5 0.1 5 66 28 94 25 116 0.71 HAS barrel domain HAS-barrel PF09378.10 92 CP023447_00074 - 501 0.061 13.5 0.1 2 2 3 7.8e+03 -2.9 0.0 52 73 201 222 184 228 0.67 HAS barrel domain Fe_dep_repress PF01325.19 60 CP023447_00074 - 501 0.074 13.3 0.0 1 1 7.4e-05 0.19 11.9 0.0 32 54 198 220 194 222 0.91 Iron dependent repressor, N-terminal DNA binding domain ATP-synt PF00231.19 279 CP023447_00075 - 294 4.2e-83 279.3 12.2 1 1 2.6e-87 4.7e-83 279.1 12.2 1 278 3 292 3 293 0.91 ATP synthase ATP-synt_ab PF00006.25 213 CP023447_00076 - 465 6.6e-65 218.7 0.0 1 1 2.2e-68 9.7e-65 218.2 0.0 1 213 132 345 132 345 0.97 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 69 CP023447_00076 - 465 1.2e-18 67.3 0.1 1 1 7.7e-22 3.4e-18 65.9 0.1 1 69 5 75 5 75 0.93 ATP synthase alpha/beta family, beta-barrel domain T3SS_ATPase_C PF18269.1 72 CP023447_00076 - 465 0.014 15.2 0.8 1 2 5.9e-05 0.26 11.2 0.2 3 28 355 380 353 412 0.71 T3SS EscN ATPase C-terminal domain T3SS_ATPase_C PF18269.1 72 CP023447_00076 - 465 0.014 15.2 0.8 2 2 0.17 7.6e+02 0.1 0.0 38 50 452 464 451 465 0.87 T3SS EscN ATPase C-terminal domain RsgA_GTPase PF03193.16 167 CP023447_00076 - 465 0.047 13.6 0.0 1 1 2.3e-05 0.1 12.5 0.0 90 157 136 203 118 204 0.88 RsgA GTPase ATP-synt_DE_N PF02823.16 80 CP023447_00077 - 129 2.7e-24 84.9 0.2 1 1 1.8e-28 3.3e-24 84.6 0.2 2 80 6 84 5 84 0.97 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MotA_ExbB PF01618.16 127 CP023447_00078 - 184 3.1e-25 88.4 0.1 1 1 2.2e-29 4e-25 88.0 0.1 22 123 72 171 48 175 0.88 MotA/TolQ/ExbB proton channel family ExbD PF02472.16 130 CP023447_00079 - 129 2.8e-28 98.7 2.3 1 1 1.8e-32 3.2e-28 98.5 2.3 3 128 5 129 4 129 0.96 Biopolymer transport protein ExbD/TolR TonB_2 PF13103.6 85 CP023447_00080 - 259 1.5e-12 47.6 0.1 1 1 3e-16 2.7e-12 46.7 0.1 1 81 167 248 167 251 0.84 TonB C terminal SHE3 PF17078.5 228 CP023447_00080 - 259 0.0069 16.1 2.0 1 1 1.2e-06 0.011 15.5 2.0 148 205 77 151 63 198 0.70 SWI5-dependent HO expression protein 3 Pectate_lyase22 PF14583.6 386 CP023447_00081 - 402 1.9e-08 33.4 2.3 1 3 0.21 7.5e+02 -1.5 0.0 46 75 183 213 159 223 0.69 Oligogalacturonate lyase Pectate_lyase22 PF14583.6 386 CP023447_00081 - 402 1.9e-08 33.4 2.3 2 3 9.9e-11 3.5e-07 29.2 0.3 44 117 226 299 221 323 0.83 Oligogalacturonate lyase Pectate_lyase22 PF14583.6 386 CP023447_00081 - 402 1.9e-08 33.4 2.3 3 3 0.01 37 2.8 0.0 57 99 329 369 319 385 0.83 Oligogalacturonate lyase PD40 PF07676.12 38 CP023447_00081 - 402 2.7e-06 27.1 1.2 1 3 8.4e-05 0.3 11.1 0.2 2 38 255 291 254 291 0.76 WD40-like Beta Propeller Repeat PD40 PF07676.12 38 CP023447_00081 - 402 2.7e-06 27.1 1.2 2 3 0.013 47 4.1 0.0 23 37 319 335 317 336 0.93 WD40-like Beta Propeller Repeat PD40 PF07676.12 38 CP023447_00081 - 402 2.7e-06 27.1 1.2 3 3 0.00056 2 8.4 0.0 11 26 353 368 345 376 0.85 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 354 CP023447_00081 - 402 0.00048 19.0 1.1 1 3 0.00027 0.96 8.1 0.1 244 325 182 258 133 262 0.63 Dipeptidyl peptidase IV (DPP IV) N-terminal region DPPIV_N PF00930.21 354 CP023447_00081 - 402 0.00048 19.0 1.1 2 3 0.00034 1.2 7.8 0.3 24 93 243 318 239 323 0.85 Dipeptidyl peptidase IV (DPP IV) N-terminal region DPPIV_N PF00930.21 354 CP023447_00081 - 402 0.00048 19.0 1.1 3 3 0.022 77 1.9 0.0 25 60 334 368 321 371 0.85 Dipeptidyl peptidase IV (DPP IV) N-terminal region TolB_N PF04052.13 106 CP023447_00081 - 402 0.014 15.5 0.1 1 2 1.4e-05 0.05 13.8 0.1 3 56 22 74 20 85 0.84 TolB amino-terminal domain TolB_N PF04052.13 106 CP023447_00081 - 402 0.014 15.5 0.1 2 2 1.2 4.4e+03 -2.1 0.0 58 82 149 173 139 178 0.73 TolB amino-terminal domain MNE1 PF13762.6 150 CP023447_00081 - 402 0.017 15.1 0.6 1 2 4.2e-05 0.15 12.0 0.3 28 77 39 86 30 121 0.88 Mitochondrial splicing apparatus component MNE1 PF13762.6 150 CP023447_00081 - 402 0.017 15.1 0.6 2 2 0.17 6.1e+02 0.3 0.0 69 90 244 265 228 278 0.80 Mitochondrial splicing apparatus component OmpA PF00691.20 95 CP023447_00082 - 165 7.2e-21 74.4 0.0 1 1 1.9e-24 1.1e-20 73.8 0.0 1 95 61 157 61 157 0.95 OmpA family ApbE PF02424.15 258 CP023447_00082 - 165 0.028 14.0 0.0 1 1 6e-06 0.036 13.6 0.0 30 110 44 135 38 161 0.75 ApbE family Pilus_CpaD PF09476.10 201 CP023447_00082 - 165 0.051 13.3 0.3 1 2 0.0095 57 3.4 0.1 2 20 10 28 9 38 0.70 Pilus biogenesis CpaD protein (pilus_cpaD) Pilus_CpaD PF09476.10 201 CP023447_00082 - 165 0.051 13.3 0.3 2 2 0.0003 1.8 8.2 0.0 86 121 108 143 93 156 0.85 Pilus biogenesis CpaD protein (pilus_cpaD) TPR_6 PF13174.6 33 CP023447_00083 - 315 5.6e-07 29.8 0.1 1 2 0.0018 2.8 8.8 0.0 3 25 238 260 236 260 0.91 Tetratricopeptide repeat TPR_6 PF13174.6 33 CP023447_00083 - 315 5.6e-07 29.8 0.1 2 2 1.9e-06 0.0029 18.1 0.0 3 33 275 305 273 305 0.97 Tetratricopeptide repeat TPR_2 PF07719.17 34 CP023447_00083 - 315 1.5e-05 24.8 0.1 1 2 4.2e-07 0.00062 19.7 0.1 1 27 235 261 235 266 0.91 Tetratricopeptide repeat TPR_2 PF07719.17 34 CP023447_00083 - 315 1.5e-05 24.8 0.1 2 2 0.16 2.3e+02 2.3 0.0 2 33 273 304 272 305 0.83 Tetratricopeptide repeat TPR_8 PF13181.6 34 CP023447_00083 - 315 0.00032 20.7 0.5 1 1 8.5e-07 0.0013 18.8 0.5 1 31 235 265 235 267 0.94 Tetratricopeptide repeat TPR_1 PF00515.28 34 CP023447_00083 - 315 0.00034 20.3 0.7 1 2 8.9e-07 0.0013 18.4 0.6 1 27 235 261 235 264 0.90 Tetratricopeptide repeat TPR_1 PF00515.28 34 CP023447_00083 - 315 0.00034 20.3 0.7 2 2 5.6 8.3e+03 -3.1 0.0 24 32 276 284 275 285 0.82 Tetratricopeptide repeat TPR_16 PF13432.6 68 CP023447_00083 - 315 0.0017 19.0 0.0 1 2 3e-05 0.044 14.4 0.0 8 58 212 259 205 261 0.87 Tetratricopeptide repeat TPR_16 PF13432.6 68 CP023447_00083 - 315 0.0017 19.0 0.0 2 2 0.2 3.1e+02 2.1 0.0 36 68 274 306 267 306 0.91 Tetratricopeptide repeat Jnk-SapK_ap_N PF09744.9 156 CP023447_00083 - 315 0.0051 17.0 9.1 1 3 3.4e-06 0.0051 17.0 9.1 36 118 44 125 43 135 0.89 JNK_SAPK-associated protein-1 Jnk-SapK_ap_N PF09744.9 156 CP023447_00083 - 315 0.0051 17.0 9.1 2 3 1.5 2.3e+03 -1.3 1.9 71 91 180 200 124 215 0.70 JNK_SAPK-associated protein-1 Jnk-SapK_ap_N PF09744.9 156 CP023447_00083 - 315 0.0051 17.0 9.1 3 3 0.77 1.2e+03 -0.3 0.8 72 92 181 201 167 231 0.64 JNK_SAPK-associated protein-1 BLOC1_2 PF10046.9 96 CP023447_00083 - 315 0.0088 16.3 8.4 1 3 5.9e-06 0.0088 16.3 8.4 11 89 35 114 26 115 0.87 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP023447_00083 - 315 0.0088 16.3 8.4 2 3 0.22 3.3e+02 1.7 0.8 14 51 108 146 102 161 0.68 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP023447_00083 - 315 0.0088 16.3 8.4 3 3 3 4.5e+03 -2.0 1.4 57 57 182 182 124 215 0.62 Biogenesis of lysosome-related organelles complex-1 subunit 2 CorA PF01544.18 292 CP023447_00083 - 315 0.043 13.1 3.5 1 1 4.9e-05 0.074 12.4 3.5 106 225 36 158 24 170 0.83 CorA-like Mg2+ transporter protein TPR_19 PF14559.6 68 CP023447_00083 - 315 0.043 14.3 0.1 1 2 9.6 1.4e+04 -3.4 0.0 54 68 122 134 118 134 0.53 Tetratricopeptide repeat TPR_19 PF14559.6 68 CP023447_00083 - 315 0.043 14.3 0.1 2 2 0.00014 0.22 12.1 0.0 2 62 246 309 245 311 0.92 Tetratricopeptide repeat ANAPC3 PF12895.7 82 CP023447_00083 - 315 0.067 13.4 0.4 1 2 0.00014 0.21 11.8 0.3 22 71 234 284 223 291 0.82 Anaphase-promoting complex, cyclosome, subunit 3 ANAPC3 PF12895.7 82 CP023447_00083 - 315 0.067 13.4 0.4 2 2 0.0016 2.4 8.4 0.3 2 53 248 303 247 308 0.78 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 77 CP023447_00083 - 315 0.071 13.4 0.0 1 1 0.00011 0.17 12.2 0.0 6 35 238 267 234 297 0.70 Tetratricopeptide repeat DUF1664 PF07889.12 124 CP023447_00083 - 315 0.08 13.0 11.4 1 2 0.00062 0.92 9.5 1.7 57 122 35 100 29 101 0.79 Protein of unknown function (DUF1664) DUF1664 PF07889.12 124 CP023447_00083 - 315 0.08 13.0 11.4 2 2 0.00014 0.21 11.7 2.1 48 99 86 137 81 147 0.89 Protein of unknown function (DUF1664) FKBP_C PF00254.28 94 CP023447_00084 - 189 2.6e-06 27.7 0.1 1 1 3e-10 5.3e-06 26.7 0.1 5 84 3 82 1 111 0.88 FKBP-type peptidyl-prolyl cis-trans isomerase Acyl_transf_1 PF00698.21 319 CP023447_00085 - 306 6.3e-21 75.2 0.0 1 1 8.3e-25 7.5e-21 75.0 0.0 2 264 5 272 4 296 0.77 Acyl transferase domain SAT PF16073.5 240 CP023447_00085 - 306 0.032 14.0 0.0 1 1 1.1e-05 0.096 12.4 0.0 73 189 57 154 33 190 0.80 Starter unit:ACP transacylase in aflatoxin biosynthesis PNP_UDP_1 PF01048.20 234 CP023447_00086 - 228 4.3e-43 147.2 0.0 1 1 2.8e-47 5e-43 147.0 0.0 1 225 2 217 2 227 0.86 Phosphorylase superfamily ATP_bind_3 PF01171.20 182 CP023447_00087 - 251 5.8e-22 78.3 0.0 1 1 1.4e-25 8.3e-22 77.8 0.0 2 162 28 190 27 195 0.86 PP-loop family NAD_synthase PF02540.17 242 CP023447_00087 - 251 0.0011 18.1 0.0 1 1 2.6e-07 0.0015 17.7 0.0 19 120 26 125 6 160 0.83 NAD synthase Asn_synthase PF00733.21 355 CP023447_00087 - 251 0.029 14.0 0.1 1 1 6.8e-06 0.041 13.6 0.1 21 85 29 96 22 137 0.81 Asparagine synthase Isochorismatase PF00857.20 175 CP023447_00088 - 173 9.1e-14 52.0 0.0 1 1 5.7e-18 1e-13 51.9 0.0 2 170 4 172 3 173 0.91 Isochorismatase family RecO_N_2 PF13114.6 71 CP023447_00089 - 204 2e-32 110.7 0.1 1 2 9.3e-36 5.6e-32 109.3 0.0 1 71 1 71 1 71 0.99 RecO N terminal RecO_N_2 PF13114.6 71 CP023447_00089 - 204 2e-32 110.7 0.1 2 2 1.2 7.3e+03 -3.2 0.0 59 69 90 100 88 101 0.80 RecO N terminal Mad3_BUB1_I PF08311.12 124 CP023447_00089 - 204 0.021 14.8 0.1 1 1 6e-06 0.036 14.0 0.1 17 58 74 116 65 156 0.80 Mad3/BUB1 homology region 1 RecO_N PF11967.8 80 CP023447_00089 - 204 0.022 14.7 0.0 1 1 6.2e-06 0.037 14.0 0.0 7 30 2 25 1 43 0.85 Recombination protein O N terminal UPF0054 PF02130.17 128 CP023447_00090 - 135 2.7e-34 117.8 1.0 1 1 3.5e-38 3.1e-34 117.5 1.0 22 127 18 121 4 122 0.91 Uncharacterized protein family UPF0054 PIG-S PF10510.9 512 CP023447_00090 - 135 0.036 12.9 0.0 1 1 4e-06 0.036 12.9 0.0 321 388 64 124 19 135 0.77 Phosphatidylinositol-glycan biosynthesis class S protein DUF573 PF04504.14 95 CP023447_00091 - 229 0.021 15.5 8.4 1 3 0.046 8.3e+02 0.7 0.1 35 65 61 92 30 121 0.55 Protein of unknown function, DUF573 DUF573 PF04504.14 95 CP023447_00091 - 229 0.021 15.5 8.4 2 3 2.8e-06 0.051 14.2 4.7 14 88 86 161 58 165 0.76 Protein of unknown function, DUF573 DUF573 PF04504.14 95 CP023447_00091 - 229 0.021 15.5 8.4 3 3 0.032 5.8e+02 1.2 0.0 5 27 190 212 186 227 0.74 Protein of unknown function, DUF573 Dus PF01207.17 310 CP023447_00092 - 308 6.2e-76 255.5 0.0 1 1 2.1e-79 7.6e-76 255.2 0.0 2 302 11 302 10 307 0.94 Dihydrouridine synthase (Dus) TIM PF00121.18 243 CP023447_00092 - 308 0.00027 20.4 0.1 1 1 1.3e-07 0.00047 19.6 0.1 195 234 185 224 175 233 0.89 Triosephosphate isomerase TMP-TENI PF02581.17 181 CP023447_00092 - 308 0.0067 15.8 0.1 1 1 4e-06 0.014 14.7 0.1 109 175 152 217 129 222 0.72 Thiamine monophosphate synthase PdxJ PF03740.13 234 CP023447_00092 - 308 0.0093 15.1 0.4 1 3 0.01 36 3.4 0.0 22 44 147 169 137 177 0.85 Pyridoxal phosphate biosynthesis protein PdxJ PdxJ PF03740.13 234 CP023447_00092 - 308 0.0093 15.1 0.4 2 3 0.00014 0.52 9.4 0.0 170 215 179 224 168 230 0.88 Pyridoxal phosphate biosynthesis protein PdxJ PdxJ PF03740.13 234 CP023447_00092 - 308 0.0093 15.1 0.4 3 3 0.9 3.2e+03 -3.0 0.1 39 61 249 271 241 297 0.62 Pyridoxal phosphate biosynthesis protein PdxJ BtpA PF03437.15 254 CP023447_00092 - 308 0.056 12.9 0.0 1 1 2.5e-05 0.091 12.2 0.0 185 228 176 221 148 244 0.88 BtpA family DUF910 PF06014.11 61 CP023447_00093 - 328 0.0037 17.3 2.3 1 2 0.00074 4.4 7.4 0.3 18 53 169 204 166 205 0.92 Bacterial protein of unknown function (DUF910) DUF910 PF06014.11 61 CP023447_00093 - 328 0.0037 17.3 2.3 2 2 0.00032 1.9 8.5 0.1 23 52 222 251 213 255 0.92 Bacterial protein of unknown function (DUF910) Utp13 PF08625.11 142 CP023447_00093 - 328 0.012 15.6 4.3 1 2 0.037 2.2e+02 1.7 0.3 6 68 84 144 79 154 0.68 Utp13 specific WD40 associated domain Utp13 PF08625.11 142 CP023447_00093 - 328 0.012 15.6 4.3 2 2 2.7e-06 0.016 15.1 0.4 5 43 239 283 237 326 0.78 Utp13 specific WD40 associated domain DUF325 PF03804.13 73 CP023447_00093 - 328 0.076 13.0 0.1 1 1 3.5e-05 0.21 11.6 0.1 14 37 118 141 108 156 0.81 Viral proteins of unknown function zf-dskA_traR PF01258.17 36 CP023447_00094 - 120 1.3e-11 44.2 2.3 1 1 1.2e-15 2.1e-11 43.6 2.3 1 36 79 114 79 114 0.96 Prokaryotic dksA/traR C4-type zinc finger SPOUT_MTase PF02590.17 154 CP023447_00095 - 149 7.4e-40 136.4 0.5 1 1 9.2e-44 8.3e-40 136.3 0.5 1 154 1 148 1 148 0.85 Predicted SPOUT methyltransferase BBP1_C PF15272.6 192 CP023447_00095 - 149 0.001 19.0 1.1 1 1 1.8e-07 0.0016 18.3 1.1 55 95 10 52 2 61 0.86 Spindle pole body component BBP1, C-terminal Carboxyl_trans PF01039.22 494 CP023447_00096 - 280 1.4e-21 76.8 0.2 1 1 5.3e-25 3.2e-21 75.5 0.2 12 179 59 238 54 249 0.85 Carboxyl transferase domain zf-ACC PF17848.1 26 CP023447_00096 - 280 1.1e-07 31.7 9.0 1 1 3.2e-11 1.9e-07 31.0 9.0 1 26 24 49 24 49 1.00 Acetyl-coA carboxylase zinc finger domain RNA_POL_M_15KD PF02150.16 36 CP023447_00096 - 280 0.071 13.0 1.7 1 1 7.5e-05 0.45 10.4 1.8 4 31 27 53 27 58 0.86 RNA polymerases M/15 Kd subunit Inositol_P PF00459.25 272 CP023447_00097 - 240 1.3e-14 54.4 0.0 1 1 2.1e-18 1.9e-14 53.9 0.0 66 228 60 208 40 211 0.83 Inositol monophosphatase family FBPase PF00316.20 189 CP023447_00097 - 240 0.015 14.8 0.0 1 1 2.8e-06 0.025 14.1 0.0 61 136 40 108 27 120 0.74 Fructose-1-6-bisphosphatase, N-terminal domain Bac_surface_Ag PF01103.23 324 CP023447_00098 - 739 4.4e-68 230.2 10.5 1 1 2e-71 7.3e-68 229.4 10.5 1 324 442 739 442 739 0.94 Surface antigen POTRA PF07244.15 80 CP023447_00098 - 739 2e-39 134.0 36.8 1 6 1.1e-08 3.9e-05 24.1 0.7 2 79 19 84 18 85 0.90 Surface antigen variable number repeat POTRA PF07244.15 80 CP023447_00098 - 739 2e-39 134.0 36.8 2 6 5.2e-11 1.9e-07 31.6 1.0 1 78 86 162 86 164 0.79 Surface antigen variable number repeat POTRA PF07244.15 80 CP023447_00098 - 739 2e-39 134.0 36.8 3 6 1.2e-09 4.4e-06 27.2 0.1 2 80 168 257 167 257 0.86 Surface antigen variable number repeat POTRA PF07244.15 80 CP023447_00098 - 739 2e-39 134.0 36.8 4 6 5.8e-09 2.1e-05 25.0 1.8 1 77 260 337 260 339 0.84 Surface antigen variable number repeat POTRA PF07244.15 80 CP023447_00098 - 739 2e-39 134.0 36.8 5 6 2.2e-16 8e-13 48.8 3.4 1 79 343 414 343 415 0.95 Surface antigen variable number repeat POTRA PF07244.15 80 CP023447_00098 - 739 2e-39 134.0 36.8 6 6 4 1.4e+04 -3.3 0.2 46 77 492 520 491 522 0.62 Surface antigen variable number repeat POTRA_2 PF08479.11 76 CP023447_00098 - 739 9e-06 25.4 2.6 1 5 0.031 1.1e+02 2.7 0.1 2 43 19 60 18 68 0.90 POTRA domain, ShlB-type POTRA_2 PF08479.11 76 CP023447_00098 - 739 9e-06 25.4 2.6 2 5 0.00017 0.61 10.0 0.1 2 66 87 151 87 158 0.93 POTRA domain, ShlB-type POTRA_2 PF08479.11 76 CP023447_00098 - 739 9e-06 25.4 2.6 3 5 0.11 3.8e+02 1.0 0.0 2 23 168 189 167 198 0.85 POTRA domain, ShlB-type POTRA_2 PF08479.11 76 CP023447_00098 - 739 9e-06 25.4 2.6 4 5 0.06 2.2e+02 1.8 0.0 32 56 209 233 203 238 0.80 POTRA domain, ShlB-type POTRA_2 PF08479.11 76 CP023447_00098 - 739 9e-06 25.4 2.6 5 5 0.009 32 4.4 0.0 12 62 270 323 260 339 0.71 POTRA domain, ShlB-type POTRA_1 PF08478.10 69 CP023447_00098 - 739 3.7e-05 23.9 4.5 1 4 0.019 69 3.8 0.1 2 31 19 48 18 72 0.86 POTRA domain, FtsQ-type POTRA_1 PF08478.10 69 CP023447_00098 - 739 3.7e-05 23.9 4.5 2 4 0.00099 3.5 8.0 0.1 3 46 88 131 87 137 0.91 POTRA domain, FtsQ-type POTRA_1 PF08478.10 69 CP023447_00098 - 739 3.7e-05 23.9 4.5 3 4 1 3.6e+03 -1.7 0.0 3 23 169 189 169 198 0.79 POTRA domain, FtsQ-type POTRA_1 PF08478.10 69 CP023447_00098 - 739 3.7e-05 23.9 4.5 4 4 0.00016 0.59 10.5 0.1 3 55 345 397 343 409 0.91 POTRA domain, FtsQ-type ShlB PF03865.13 312 CP023447_00098 - 739 0.00035 20.1 1.4 1 2 0.6 2.1e+03 -2.2 0.0 128 164 376 412 347 435 0.73 Haemolysin secretion/activation protein ShlB/FhaC/HecB ShlB PF03865.13 312 CP023447_00098 - 739 0.00035 20.1 1.4 2 2 1.6e-07 0.00057 19.4 0.2 199 299 587 693 557 705 0.71 Haemolysin secretion/activation protein ShlB/FhaC/HecB PDH PF02153.17 258 CP023447_00099 - 275 2.6e-69 233.1 0.2 1 1 9.6e-73 2.9e-69 233.0 0.2 2 258 16 267 15 267 0.97 Prephenate dehydrogenase F420_oxidored PF03807.17 97 CP023447_00099 - 275 0.00016 22.2 0.2 1 2 2.1e-07 0.00063 20.3 0.0 1 93 2 89 2 92 0.76 NADP oxidoreductase coenzyme F420-dependent F420_oxidored PF03807.17 97 CP023447_00099 - 275 0.00016 22.2 0.2 2 2 1.3 3.7e+03 -1.4 0.0 35 67 148 178 140 203 0.55 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 158 CP023447_00099 - 275 0.00044 20.5 0.0 1 1 2.5e-07 0.00076 19.7 0.0 1 106 2 107 2 128 0.69 NAD binding domain of 6-phosphogluconate dehydrogenase IPT PF01745.16 233 CP023447_00099 - 275 0.03 13.7 0.2 1 1 1.7e-05 0.05 13.0 0.2 80 148 189 258 182 273 0.82 Isopentenyl transferase FNIP PF05725.12 44 CP023447_00099 - 275 0.048 13.8 0.6 1 1 3.8e-05 0.11 12.6 0.6 9 37 80 106 76 108 0.78 FNIP Repeat IlvN PF07991.12 165 CP023447_00099 - 275 0.072 12.7 0.0 1 2 0.00012 0.36 10.4 0.0 6 75 2 73 1 83 0.78 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvN PF07991.12 165 CP023447_00099 - 275 0.072 12.7 0.0 2 2 0.26 7.6e+02 -0.4 0.0 77 108 139 172 131 179 0.76 Acetohydroxy acid isomeroreductase, NADPH-binding domain Peptidase_M23 PF01551.22 96 CP023447_00100 - 457 1.3e-17 63.7 2.8 1 3 0.83 7.5e+03 -2.8 0.0 30 50 60 80 53 88 0.66 Peptidase family M23 Peptidase_M23 PF01551.22 96 CP023447_00100 - 457 1.3e-17 63.7 2.8 2 3 0.2 1.8e+03 -0.8 0.0 30 66 156 193 144 201 0.71 Peptidase family M23 Peptidase_M23 PF01551.22 96 CP023447_00100 - 457 1.3e-17 63.7 2.8 3 3 1.9e-21 1.7e-17 63.4 0.3 2 94 335 427 334 429 0.95 Peptidase family M23 Sigma_reg_N PF13800.6 90 CP023447_00100 - 457 0.089 13.1 0.9 1 2 8.7e-05 0.78 10.1 0.7 5 34 2 31 1 37 0.86 Sigma factor regulator N-terminal Sigma_reg_N PF13800.6 90 CP023447_00100 - 457 0.089 13.1 0.9 2 2 0.12 1.1e+03 -0.0 0.0 42 68 127 153 124 165 0.86 Sigma factor regulator N-terminal LpxC PF03331.13 270 CP023447_00101 - 294 2.8e-101 338.6 0.0 1 1 1.8e-105 3.2e-101 338.4 0.0 1 269 3 270 3 271 0.99 UDP-3-O-acyl N-acetylglycosamine deacetylase Peptidase_M22 PF00814.25 271 CP023447_00102 - 133 0.00024 20.9 0.0 1 1 1.7e-08 0.0003 20.6 0.0 30 97 21 83 14 93 0.82 Glycoprotease family GHMP_kinases_N PF00288.26 66 CP023447_00103 - 292 7.8e-10 38.9 0.0 1 2 2.9e-13 2.6e-09 37.2 0.0 3 66 78 137 76 137 0.79 GHMP kinases N terminal domain GHMP_kinases_N PF00288.26 66 CP023447_00103 - 292 7.8e-10 38.9 0.0 2 2 1 9.2e+03 -3.0 0.0 41 60 170 188 151 191 0.56 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 85 CP023447_00103 - 292 0.00048 20.4 0.0 1 2 0.64 5.7e+03 -2.2 0.0 58 79 135 155 133 159 0.77 GHMP kinases C terminal GHMP_kinases_C PF08544.13 85 CP023447_00103 - 292 0.00048 20.4 0.0 2 2 2e-07 0.0018 18.6 0.0 30 84 224 275 211 276 0.84 GHMP kinases C terminal zf-FPG_IleRS PF06827.14 30 CP023447_00104 - 65 0.045 13.6 0.1 1 1 4.4e-06 0.079 12.8 0.1 16 29 17 30 11 31 0.83 Zinc finger found in FPG and IleRS IF-2 PF11987.8 105 CP023447_00105 - 861 3.2e-37 126.8 1.1 1 2 5.1 8.3e+03 -3.0 0.2 50 71 445 467 424 480 0.65 Translation-initiation factor 2 IF-2 PF11987.8 105 CP023447_00105 - 861 3.2e-37 126.8 1.1 2 2 2e-40 3.2e-37 126.8 1.1 3 105 647 751 645 751 0.94 Translation-initiation factor 2 GTP_EFTU PF00009.27 194 CP023447_00105 - 861 1.7e-33 115.8 2.5 1 2 3.8 6.2e+03 -3.5 0.4 40 64 152 176 128 200 0.54 Elongation factor Tu GTP binding domain GTP_EFTU PF00009.27 194 CP023447_00105 - 861 1.7e-33 115.8 2.5 2 2 1e-36 1.7e-33 115.8 2.5 5 189 364 520 360 524 0.90 Elongation factor Tu GTP binding domain IF2_N PF04760.15 54 CP023447_00105 - 861 6.6e-32 109.1 6.2 1 3 2e-18 3.2e-15 55.7 0.3 1 52 1 51 1 53 0.96 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP023447_00105 - 861 6.6e-32 109.1 6.2 2 3 3.2e-18 5.3e-15 55.0 0.5 2 54 283 333 282 333 0.97 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP023447_00105 - 861 6.6e-32 109.1 6.2 3 3 3 4.9e+03 -2.6 0.0 19 36 725 741 722 741 0.78 Translation initiation factor IF-2, N-terminal region MMR_HSR1 PF01926.23 114 CP023447_00105 - 861 1.6e-11 44.3 0.2 1 2 4.2 6.8e+03 -2.9 0.2 90 98 142 150 106 191 0.52 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 CP023447_00105 - 861 1.6e-11 44.3 0.2 2 2 9.6e-15 1.6e-11 44.3 0.2 2 114 365 470 364 470 0.88 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP023447_00105 - 861 1.2e-09 38.4 10.1 1 2 6.4e-05 0.1 13.0 1.8 1 66 550 608 550 613 0.88 Elongation factor Tu domain 2 GTP_EFTU_D2 PF03144.25 74 CP023447_00105 - 861 1.2e-09 38.4 10.1 2 2 1.1e-09 1.7e-06 28.3 1.4 1 72 782 848 782 850 0.91 Elongation factor Tu domain 2 Ras PF00071.22 162 CP023447_00105 - 861 1.5e-06 27.9 0.0 1 3 2 3.2e+03 -2.4 0.4 107 129 130 151 119 191 0.64 Ras family Ras PF00071.22 162 CP023447_00105 - 861 1.5e-06 27.9 0.0 2 3 9.3e-10 1.5e-06 27.9 0.0 3 157 366 520 364 524 0.78 Ras family Ras PF00071.22 162 CP023447_00105 - 861 1.5e-06 27.9 0.0 3 3 2 3.2e+03 -2.4 0.1 108 147 611 654 602 665 0.73 Ras family Arf PF00025.21 175 CP023447_00105 - 861 4.8e-06 26.1 1.7 1 3 4.3 7e+03 -3.7 0.1 118 138 130 151 116 172 0.58 ADP-ribosylation factor family Arf PF00025.21 175 CP023447_00105 - 861 4.8e-06 26.1 1.7 2 3 1.1e-08 1.8e-05 24.3 0.0 17 171 365 519 354 523 0.86 ADP-ribosylation factor family Arf PF00025.21 175 CP023447_00105 - 861 4.8e-06 26.1 1.7 3 3 0.33 5.4e+02 -0.1 0.1 109 169 601 661 589 666 0.84 ADP-ribosylation factor family FeoB_N PF02421.18 156 CP023447_00105 - 861 0.00017 21.2 0.2 1 1 5.9e-07 0.00096 18.7 0.2 3 153 365 516 363 519 0.71 Ferrous iron transport protein B RsgA_GTPase PF03193.16 167 CP023447_00105 - 861 0.00028 20.9 7.5 1 4 3.9 6.3e+03 -3.1 0.8 37 63 128 154 71 185 0.61 RsgA GTPase RsgA_GTPase PF03193.16 167 CP023447_00105 - 861 0.00028 20.9 7.5 2 4 0.0069 11 5.9 0.0 88 163 351 421 293 425 0.58 RsgA GTPase RsgA_GTPase PF03193.16 167 CP023447_00105 - 861 0.00028 20.9 7.5 3 4 1.4e-06 0.0023 17.8 0.0 10 96 426 518 419 527 0.78 RsgA GTPase RsgA_GTPase PF03193.16 167 CP023447_00105 - 861 0.00028 20.9 7.5 4 4 1 1.6e+03 -1.2 0.1 43 84 653 694 635 717 0.63 RsgA GTPase Roc PF08477.13 120 CP023447_00105 - 861 0.0016 18.6 0.0 1 1 2.7e-06 0.0044 17.2 0.0 2 120 365 473 364 473 0.72 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1_Xtn PF16897.5 106 CP023447_00105 - 861 0.056 13.5 1.6 1 3 1.3 2.2e+03 -1.3 0.1 33 49 278 294 253 348 0.57 C-terminal region of MMR_HSR1 domain MMR_HSR1_Xtn PF16897.5 106 CP023447_00105 - 861 0.056 13.5 1.6 2 3 0.00053 0.87 9.6 0.0 56 99 462 518 439 524 0.75 C-terminal region of MMR_HSR1 domain MMR_HSR1_Xtn PF16897.5 106 CP023447_00105 - 861 0.056 13.5 1.6 3 3 0.48 7.8e+02 0.1 0.1 60 100 612 652 609 656 0.86 C-terminal region of MMR_HSR1 domain RBFA PF02033.18 105 CP023447_00106 - 120 1.7e-13 50.9 0.0 1 1 3.2e-17 1.9e-13 50.7 0.0 2 105 8 110 7 110 0.91 Ribosome-binding factor A CAAP1 PF15335.6 63 CP023447_00106 - 120 0.027 15.0 0.5 1 2 0.32 1.9e+03 -0.5 0.0 30 43 1 14 1 16 0.71 Caspase activity and apoptosis inhibitor 1 CAAP1 PF15335.6 63 CP023447_00106 - 120 0.027 15.0 0.5 2 2 2.1e-05 0.13 12.9 0.3 24 52 12 40 8 43 0.89 Caspase activity and apoptosis inhibitor 1 PRANC PF09372.10 97 CP023447_00106 - 120 0.079 13.3 0.5 1 2 0.072 4.3e+02 1.3 0.1 83 96 22 35 12 36 0.84 PRANC domain PRANC PF09372.10 97 CP023447_00106 - 120 0.079 13.3 0.5 2 2 0.00015 0.89 9.9 0.0 36 77 50 91 37 92 0.86 PRANC domain DUF150 PF02576.17 73 CP023447_00107 - 140 3.4e-25 88.2 0.4 1 2 3.7e-28 1.7e-24 86.0 0.1 2 73 3 74 2 74 0.98 RimP N-terminal domain DUF150 PF02576.17 73 CP023447_00107 - 140 3.4e-25 88.2 0.4 2 2 0.19 8.3e+02 0.5 0.1 12 43 89 119 79 127 0.65 RimP N-terminal domain DUF150_C PF17384.2 70 CP023447_00107 - 140 2.4e-18 66.0 2.9 1 1 7.7e-22 3.5e-18 65.5 2.9 1 70 77 140 77 140 0.95 RimP C-terminal SH3 domain LolA_like PF17131.4 183 CP023447_00107 - 140 0.02 14.6 0.6 1 1 7.5e-06 0.034 13.9 0.6 116 166 79 132 75 138 0.83 Outer membrane lipoprotein-sorting protein LSM14 PF12701.7 75 CP023447_00107 - 140 0.036 14.2 0.1 1 1 1.3e-05 0.058 13.5 0.1 2 36 86 118 85 136 0.90 Scd6-like Sm domain AAA_5 PF07728.14 138 CP023447_00108 - 773 3.8e-12 46.4 0.0 1 2 0.01 45 4.0 0.0 3 14 328 339 326 393 0.82 AAA domain (dynein-related subfamily) AAA_5 PF07728.14 138 CP023447_00108 - 773 3.8e-12 46.4 0.0 2 2 1.3e-13 5.9e-10 39.3 0.0 59 138 558 642 538 642 0.82 AAA domain (dynein-related subfamily) AAA PF00004.29 132 CP023447_00108 - 773 3e-05 24.4 0.0 1 2 0.00051 2.3 8.7 0.0 2 13 328 339 327 386 0.82 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP023447_00108 - 773 3e-05 24.4 0.0 2 2 2.4e-05 0.11 13.0 0.1 41 127 547 645 503 650 0.82 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 146 CP023447_00108 - 773 0.049 14.0 0.1 1 1 0.00016 0.71 10.2 0.1 14 47 328 357 317 596 0.55 AAA domain CHASE5 PF17149.4 108 CP023447_00108 - 773 0.076 12.9 0.7 1 2 0.00042 1.9 8.4 0.1 28 52 1 25 1 46 0.83 Periplasmic sensor domain found in signal transduction proteins CHASE5 PF17149.4 108 CP023447_00108 - 773 0.076 12.9 0.7 2 2 0.059 2.6e+02 1.5 0.1 6 43 234 271 230 317 0.80 Periplasmic sensor domain found in signal transduction proteins McrBC PF10117.9 320 CP023447_00109 - 445 1.9e-108 362.4 13.0 1 1 1.3e-112 2.4e-108 362.1 13.0 1 320 54 399 54 399 0.96 McrBC 5-methylcytosine restriction system component ABC-3 PF00950.17 258 CP023447_00110 - 267 6.2e-72 242.2 35.7 1 1 7.8e-76 7e-72 242.0 35.7 2 256 7 261 6 263 0.99 ABC 3 transport family FecCD PF01032.18 312 CP023447_00110 - 267 4.2e-10 39.1 35.4 1 1 8.3e-14 7.4e-10 38.3 35.4 67 291 32 245 7 263 0.79 FecCD transport family ABC_tran PF00005.27 137 CP023447_00111 - 284 1.3e-28 100.2 0.1 1 2 3.6e-31 3.5e-28 98.8 0.0 1 137 19 159 19 159 0.92 ABC transporter ABC_tran PF00005.27 137 CP023447_00111 - 284 1.3e-28 100.2 0.1 2 2 3 2.9e+03 -1.3 0.0 24 28 218 222 169 273 0.58 ABC transporter AAA_21 PF13304.6 303 CP023447_00111 - 284 3.4e-09 37.0 0.7 1 2 2.8e-07 0.00028 20.8 0.1 3 29 33 58 31 82 0.74 AAA domain, putative AbiEii toxin, Type IV TA system AAA_21 PF13304.6 303 CP023447_00111 - 284 3.4e-09 37.0 0.7 2 2 2.1e-05 0.021 14.6 0.0 234 301 128 192 125 195 0.92 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 220 CP023447_00111 - 284 4.9e-07 29.4 1.0 1 2 2e-06 0.002 17.6 0.0 24 62 29 67 17 86 0.80 RecF/RecN/SMC N terminal domain SMC_N PF02463.19 220 CP023447_00111 - 284 4.9e-07 29.4 1.0 2 2 0.00036 0.36 10.2 0.1 134 202 128 193 104 208 0.78 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 61 CP023447_00111 - 284 0.00018 21.2 0.0 1 1 3.4e-07 0.00034 20.3 0.0 16 54 23 61 12 64 0.82 P-loop containing region of AAA domain AAA_22 PF13401.6 137 CP023447_00111 - 284 0.00034 20.9 0.1 1 1 1.4e-06 0.0014 18.9 0.1 4 127 28 185 25 204 0.56 AAA domain ATPase_2 PF01637.18 233 CP023447_00111 - 284 0.00057 19.9 1.5 1 1 5.7e-06 0.0057 16.6 1.5 17 83 26 142 14 223 0.57 ATPase domain predominantly from Archaea AAA_15 PF13175.6 369 CP023447_00111 - 284 0.0027 17.5 14.7 1 1 8.1e-06 0.0081 15.9 14.7 15 167 20 274 15 282 0.75 AAA ATPase domain AAA_27 PF13514.6 207 CP023447_00111 - 284 0.0049 16.5 0.0 1 1 9.9e-06 0.0098 15.5 0.0 18 50 21 53 15 59 0.89 AAA domain SbcCD_C PF13558.6 90 CP023447_00111 - 284 0.0056 16.9 0.1 1 1 0.00013 0.13 12.6 0.1 21 88 119 173 102 175 0.75 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 CP023447_00111 - 284 0.011 15.5 0.0 1 1 0.0001 0.099 12.3 0.0 19 121 30 185 22 189 0.57 AAA domain AAA_23 PF13476.6 200 CP023447_00111 - 284 0.013 16.0 6.6 1 1 7.6e-05 0.076 13.5 6.6 14 40 21 50 5 283 0.90 AAA domain RsgA_GTPase PF03193.16 167 CP023447_00111 - 284 0.027 14.4 0.0 1 1 7e-05 0.07 13.0 0.0 98 123 27 53 6 70 0.77 RsgA GTPase AAA_16 PF13191.6 170 CP023447_00111 - 284 0.027 14.8 0.0 1 1 4.3e-05 0.043 14.2 0.0 27 57 32 65 23 176 0.84 AAA ATPase domain AAA PF00004.29 132 CP023447_00111 - 284 0.033 14.6 0.3 1 1 0.00013 0.13 12.7 0.3 3 26 34 86 32 187 0.65 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 168 CP023447_00111 - 284 0.043 13.7 0.0 1 1 9.3e-05 0.093 12.6 0.0 4 27 34 57 31 62 0.91 NTPase AAA_14 PF13173.6 131 CP023447_00111 - 284 0.044 13.8 0.2 1 1 0.00021 0.2 11.7 0.1 3 43 30 69 28 232 0.86 AAA domain IstB_IS21 PF01695.17 178 CP023447_00111 - 284 0.062 13.0 0.0 1 2 0.011 11 5.7 0.0 45 64 27 46 11 64 0.84 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP023447_00111 - 284 0.062 13.0 0.0 2 2 0.017 17 5.1 0.0 107 141 147 180 126 190 0.80 IstB-like ATP binding protein NACHT PF05729.12 166 CP023447_00111 - 284 0.084 12.8 0.1 1 2 0.00028 0.28 11.1 0.0 3 31 32 60 30 94 0.80 NACHT domain NACHT PF05729.12 166 CP023447_00111 - 284 0.084 12.8 0.1 2 2 2 2e+03 -1.4 0.0 86 115 153 179 128 192 0.59 NACHT domain ZnuA PF01297.17 256 CP023447_00112 - 296 1.5e-55 188.4 3.1 1 1 1e-59 1.8e-55 188.1 3.1 1 229 34 276 34 291 0.86 Zinc-uptake complex component A periplasmic Relaxase PF03432.14 242 KC907204_00001 - 416 2.1e-09 37.3 4.9 1 3 0.039 1.7e+02 1.6 2.4 127 195 13 80 2 112 0.51 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 KC907204_00001 - 416 2.1e-09 37.3 4.9 2 3 4.8e-13 2.1e-09 37.3 4.9 52 126 124 202 73 264 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 KC907204_00001 - 416 2.1e-09 37.3 4.9 3 3 1 4.7e+03 -3.1 0.5 40 52 378 390 338 412 0.53 Relaxase/Mobilisation nuclease domain B3 PF02362.21 101 KC907204_00001 - 416 0.00093 19.0 0.2 1 2 0.2 9.1e+02 -0.2 0.0 25 48 174 197 153 202 0.78 B3 DNA binding domain B3 PF02362.21 101 KC907204_00001 - 416 0.00093 19.0 0.2 2 2 2.3e-06 0.01 15.7 0.1 42 100 274 330 255 331 0.79 B3 DNA binding domain Ig_GlcNase PF18368.1 105 KC907204_00001 - 416 0.039 14.1 0.2 1 3 3.2 1.4e+04 -3.8 0.0 31 44 57 70 49 87 0.51 Exo-beta-D-glucosaminidase Ig-fold domain Ig_GlcNase PF18368.1 105 KC907204_00001 - 416 0.039 14.1 0.2 2 3 3.8e-05 0.17 12.0 0.0 13 71 147 205 137 233 0.79 Exo-beta-D-glucosaminidase Ig-fold domain Ig_GlcNase PF18368.1 105 KC907204_00001 - 416 0.039 14.1 0.2 3 3 1.2 5.3e+03 -2.4 0.0 31 44 340 354 322 361 0.72 Exo-beta-D-glucosaminidase Ig-fold domain DUF2884 PF11101.8 228 KC907204_00001 - 416 0.045 13.3 0.1 1 1 2.5e-05 0.11 12.0 0.1 82 144 60 121 55 129 0.89 Protein of unknown function (DUF2884) APH PF01636.23 240 KX931103_00001 - 297 1.9e-24 86.9 0.0 1 1 2.9e-28 2.6e-24 86.5 0.0 5 239 21 252 18 253 0.88 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 KX931103_00001 - 297 0.0013 18.3 1.5 1 2 1.5e-07 0.0013 18.3 1.5 67 175 111 211 89 225 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 KX931103_00001 - 297 0.0013 18.3 1.5 2 2 0.46 4.1e+03 -2.9 0.0 24 24 256 256 238 296 0.47 Choline/ethanolamine kinase APH PF01636.23 240 KX931104_00001 - 297 1.9e-24 86.9 0.0 1 1 2.9e-28 2.6e-24 86.5 0.0 5 239 21 252 18 253 0.88 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 KX931104_00001 - 297 0.0013 18.3 1.5 1 2 1.5e-07 0.0013 18.3 1.5 67 175 111 211 89 225 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 KX931104_00001 - 297 0.0013 18.3 1.5 2 2 0.46 4.1e+03 -2.9 0.0 24 24 256 256 238 296 0.47 Choline/ethanolamine kinase Mur_ligase_M PF08245.12 192 NAAE01000001_00001 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 NAAE01000001_00001 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 NAAE01000001_00001 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain CTP_transf_3 PF02348.19 221 NAAE01000001_00003 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 NAAE01000001_00003 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 NAAE01000001_00003 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 NAAE01000001_00003 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 NAAE01000001_00003 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain PALP PF00291.25 294 NAAE01000001_00004 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 NAAE01000001_00004 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 NAAE01000001_00004 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 NAAE01000001_00004 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 NAAE01000001_00004 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 NAAE01000001_00004 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain LpxK PF02606.14 327 NAAE01000001_00005 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 NAAE01000001_00005 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 NAAE01000001_00005 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 NAAE01000001_00005 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) NAD_synthase PF02540.17 242 NAAE01000001_00006 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 NAAE01000001_00006 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 NAAE01000001_00006 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 NAAE01000001_00006 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 NAAE01000001_00006 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 NAAE01000001_00006 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 NAAE01000001_00006 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 NAAE01000001_00006 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 NAAE01000001_00006 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family Lactamase_B PF00753.27 197 NAAE01000001_00007 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 NAAE01000001_00007 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain adh_short_C2 PF13561.6 234 NAAE01000001_00009 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 NAAE01000001_00009 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 NAAE01000001_00009 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 NAAE01000001_00009 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 NAAE01000001_00009 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif DHDPS PF00701.22 289 NAAE01000001_00010 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 NAAE01000001_00010 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 NAAE01000001_00010 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 Peptidase_M16_C PF05193.21 183 NAAE01000001_00011 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 NAAE01000001_00011 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 NAAE01000001_00011 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 NAAE01000001_00011 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 NAAE01000001_00011 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 NAAE01000001_00011 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHO_dh PF01180.21 295 NAAE01000001_00012 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 NAAE01000001_00012 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 NAAE01000001_00012 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 NAAE01000001_00012 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 NAAE01000001_00012 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family ABC_membrane PF00664.23 274 NAAE01000001_00013 - 580 4.4e-48 164.3 8.4 1 1 3.2e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 NAAE01000001_00013 - 580 4.9e-31 108.1 0.1 1 1 5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 NAAE01000001_00013 - 580 6e-10 38.9 5.9 1 1 7.7e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 NAAE01000001_00013 - 580 0.00081 19.3 0.2 1 2 4.1 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 NAAE01000001_00013 - 580 0.00081 19.3 0.2 2 2 1.1e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 NAAE01000001_00013 - 580 0.0025 18.1 0.4 1 1 1.5e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 NAAE01000001_00013 - 580 0.0056 16.9 0.2 1 1 2.6e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 NAAE01000001_00013 - 580 0.0098 15.6 0.1 1 1 2.3e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 NAAE01000001_00013 - 580 0.024 15.0 0.3 1 3 0.91 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 NAAE01000001_00013 - 580 0.024 15.0 0.3 2 3 1.3e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 NAAE01000001_00013 - 580 0.024 15.0 0.3 3 3 0.83 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 NAAE01000001_00013 - 580 0.035 14.5 0.0 1 1 5.2e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 NAAE01000001_00013 - 580 0.094 12.5 0.7 1 2 4.1 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 NAAE01000001_00013 - 580 0.094 12.5 0.7 2 2 0.00011 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain tRNA-synt_1e PF01406.19 301 NAAE01000001_00014 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 NAAE01000001_00014 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 NAAE01000001_00014 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 NAAE01000001_00014 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 NAAE01000001_00014 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 NAAE01000001_00014 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 NAAE01000001_00014 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 NAAE01000001_00014 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 NAAE01000001_00014 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 NAAE01000001_00014 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 NAAE01000001_00014 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 NAAE01000001_00014 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) MurJ PF03023.14 452 NAAE01000001_00015 - 483 1e-91 307.8 60.1 1 1 9.5e-96 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ FapA PF03961.13 454 NAAE01000001_00016 - 619 3.5e-30 105.0 37.0 1 1 5.8e-34 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 NAAE01000001_00016 - 619 0.027 13.8 8.1 1 1 6.8e-06 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein HHH_5 PF14520.6 57 NAAE01000001_00017 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 NAAE01000001_00017 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 NAAE01000001_00017 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 NAAE01000001_00017 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 NAAE01000001_00017 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 NAAE01000001_00017 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 NAAE01000001_00017 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 NAAE01000001_00017 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 NAAE01000001_00017 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 NAAE01000001_00017 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 NAAE01000001_00017 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 NAAE01000001_00017 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 NAAE01000001_00017 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 NAAE01000001_00017 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 NAAE01000001_00017 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 NAAE01000001_00017 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 NAAE01000001_00017 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 NAAE01000001_00017 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 NAAE01000001_00017 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 NAAE01000001_00017 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 NAAE01000001_00017 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 NAAE01000001_00017 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda Dala_Dala_lig_C PF07478.13 204 NAAE01000001_00018 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 NAAE01000001_00018 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 NAAE01000001_00018 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 NAAE01000001_00018 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 NAAE01000001_00018 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 NAAE01000001_00018 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 NAAE01000001_00018 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 NAAE01000001_00018 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 NAAE01000001_00018 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain PhdYeFM_antitox PF02604.19 75 NAAE01000001_00019 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system Mur_ligase_M PF08245.12 192 NAAG01000003_00002 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 NAAG01000003_00002 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 NAAG01000003_00002 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain Abhydrolase_1 PF00561.20 257 NAAG01000003_00003 - 239 5.1e-09 36.2 0.0 1 2 1.3e-08 3.3e-05 23.7 0.0 3 95 28 112 26 120 0.87 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 257 NAAG01000003_00003 - 239 5.1e-09 36.2 0.0 2 2 0.00011 0.27 10.8 0.0 207 254 180 226 119 228 0.78 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 220 NAAG01000003_00003 - 239 6.4e-07 30.2 0.0 1 1 9.3e-10 2.4e-06 28.3 0.0 1 97 28 121 28 234 0.65 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 239 NAAG01000003_00003 - 239 2.5e-05 23.7 0.0 1 1 1.5e-08 3.9e-05 23.0 0.0 7 116 28 126 25 164 0.74 Serine aminopeptidase, S33 FSH1 PF03959.13 212 NAAG01000003_00003 - 239 0.0031 17.2 0.1 1 2 0.016 42 3.7 0.0 5 26 26 47 23 61 0.81 Serine hydrolase (FSH1) FSH1 PF03959.13 212 NAAG01000003_00003 - 239 0.0031 17.2 0.1 2 2 0.0001 0.26 10.9 0.0 151 201 176 223 85 225 0.74 Serine hydrolase (FSH1) Lipase_3 PF01764.25 142 NAAG01000003_00003 - 239 0.018 14.9 0.0 1 2 2e-05 0.051 13.5 0.0 44 83 57 108 17 113 0.74 Lipase (class 3) Lipase_3 PF01764.25 142 NAAG01000003_00003 - 239 0.018 14.9 0.0 2 2 1 2.7e+03 -1.9 0.0 46 71 167 192 141 194 0.65 Lipase (class 3) Abhydrolase_4 PF08386.10 103 NAAG01000003_00003 - 239 0.053 13.6 0.0 1 1 3.2e-05 0.083 13.0 0.0 32 65 182 215 169 238 0.78 TAP-like protein Rota_VP2 PF05087.12 884 NAAG01000003_00003 - 239 0.056 11.6 0.0 1 1 2.7e-05 0.069 11.3 0.0 724 781 52 109 43 136 0.81 Rotavirus VP2 protein PhdYeFM_antitox PF02604.19 75 NAAG01000003_00004 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system Dala_Dala_lig_C PF07478.13 204 NAAG01000003_00005 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 NAAG01000003_00005 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 NAAG01000003_00005 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 NAAG01000003_00005 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 NAAG01000003_00005 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 NAAG01000003_00005 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 NAAG01000003_00005 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 NAAG01000003_00005 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 NAAG01000003_00005 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain HHH_5 PF14520.6 57 NAAG01000003_00006 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 NAAG01000003_00006 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 NAAG01000003_00006 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 NAAG01000003_00006 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 NAAG01000003_00006 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 NAAG01000003_00006 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 NAAG01000003_00006 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 NAAG01000003_00006 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 NAAG01000003_00006 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 NAAG01000003_00006 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 NAAG01000003_00006 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 NAAG01000003_00006 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 NAAG01000003_00006 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 NAAG01000003_00006 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 NAAG01000003_00006 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 NAAG01000003_00006 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 NAAG01000003_00006 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 NAAG01000003_00006 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 NAAG01000003_00006 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 NAAG01000003_00006 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 NAAG01000003_00006 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 NAAG01000003_00006 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda FapA PF03961.13 454 NAAG01000003_00007 - 619 3.5e-30 105.0 37.0 1 1 5.8e-34 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 NAAG01000003_00007 - 619 0.027 13.8 8.1 1 1 6.8e-06 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein MurJ PF03023.14 452 NAAG01000003_00008 - 483 1e-91 307.8 60.1 1 1 9.5e-96 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ tRNA-synt_1e PF01406.19 301 NAAG01000003_00009 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 NAAG01000003_00009 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 NAAG01000003_00009 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 NAAG01000003_00009 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 NAAG01000003_00009 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 NAAG01000003_00009 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 NAAG01000003_00009 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 NAAG01000003_00009 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 NAAG01000003_00009 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 NAAG01000003_00009 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 NAAG01000003_00009 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 NAAG01000003_00009 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) ABC_membrane PF00664.23 274 NAAG01000003_00010 - 580 4.4e-48 164.3 8.4 1 1 3.2e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 NAAG01000003_00010 - 580 4.9e-31 108.1 0.1 1 1 5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 NAAG01000003_00010 - 580 6e-10 38.9 5.9 1 1 7.7e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 NAAG01000003_00010 - 580 0.00081 19.3 0.2 1 2 4.1 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 NAAG01000003_00010 - 580 0.00081 19.3 0.2 2 2 1.1e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 NAAG01000003_00010 - 580 0.0025 18.1 0.4 1 1 1.5e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 NAAG01000003_00010 - 580 0.0056 16.9 0.2 1 1 2.6e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 NAAG01000003_00010 - 580 0.0098 15.6 0.1 1 1 2.3e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 NAAG01000003_00010 - 580 0.024 15.0 0.3 1 3 0.91 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 NAAG01000003_00010 - 580 0.024 15.0 0.3 2 3 1.3e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 NAAG01000003_00010 - 580 0.024 15.0 0.3 3 3 0.83 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 NAAG01000003_00010 - 580 0.035 14.5 0.0 1 1 5.2e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 NAAG01000003_00010 - 580 0.094 12.5 0.7 1 2 4.1 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 NAAG01000003_00010 - 580 0.094 12.5 0.7 2 2 0.00011 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain DHO_dh PF01180.21 295 NAAG01000003_00011 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 NAAG01000003_00011 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 NAAG01000003_00011 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 NAAG01000003_00011 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 NAAG01000003_00011 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family Peptidase_M16_C PF05193.21 183 NAAG01000003_00012 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 NAAG01000003_00012 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 NAAG01000003_00012 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 NAAG01000003_00012 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 NAAG01000003_00012 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 NAAG01000003_00012 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHDPS PF00701.22 289 NAAG01000003_00013 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 NAAG01000003_00013 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 NAAG01000003_00013 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 adh_short_C2 PF13561.6 234 NAAG01000003_00014 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 NAAG01000003_00014 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 NAAG01000003_00014 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 NAAG01000003_00014 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 NAAG01000003_00014 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif Lactamase_B PF00753.27 197 NAAG01000003_00016 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 NAAG01000003_00016 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain NAD_synthase PF02540.17 242 NAAG01000003_00017 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 NAAG01000003_00017 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 NAAG01000003_00017 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 NAAG01000003_00017 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 NAAG01000003_00017 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 NAAG01000003_00017 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 NAAG01000003_00017 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 NAAG01000003_00017 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 NAAG01000003_00017 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family LpxK PF02606.14 327 NAAG01000003_00018 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 NAAG01000003_00018 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 NAAG01000003_00018 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 NAAG01000003_00018 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) PALP PF00291.25 294 NAAG01000003_00019 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 NAAG01000003_00019 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 NAAG01000003_00019 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 NAAG01000003_00019 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 NAAG01000003_00019 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 NAAG01000003_00019 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain CTP_transf_3 PF02348.19 221 NAAG01000003_00020 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 NAAG01000003_00020 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 NAAG01000003_00020 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 NAAG01000003_00020 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 NAAG01000003_00020 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain Mur_ligase_M PF08245.12 192 NAAH01000003_00002 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 NAAH01000003_00002 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 NAAH01000003_00002 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain Abhydrolase_1 PF00561.20 257 NAAH01000003_00003 - 239 5.1e-09 36.2 0.0 1 2 1.3e-08 3.3e-05 23.7 0.0 3 95 28 112 26 120 0.87 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 257 NAAH01000003_00003 - 239 5.1e-09 36.2 0.0 2 2 0.00011 0.27 10.8 0.0 207 254 180 226 119 228 0.78 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 220 NAAH01000003_00003 - 239 6.4e-07 30.2 0.0 1 1 9.3e-10 2.4e-06 28.3 0.0 1 97 28 121 28 234 0.65 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 239 NAAH01000003_00003 - 239 2.5e-05 23.7 0.0 1 1 1.5e-08 3.9e-05 23.0 0.0 7 116 28 126 25 164 0.74 Serine aminopeptidase, S33 FSH1 PF03959.13 212 NAAH01000003_00003 - 239 0.0031 17.2 0.1 1 2 0.016 42 3.7 0.0 5 26 26 47 23 61 0.81 Serine hydrolase (FSH1) FSH1 PF03959.13 212 NAAH01000003_00003 - 239 0.0031 17.2 0.1 2 2 0.0001 0.26 10.9 0.0 151 201 176 223 85 225 0.74 Serine hydrolase (FSH1) Lipase_3 PF01764.25 142 NAAH01000003_00003 - 239 0.018 14.9 0.0 1 2 2e-05 0.051 13.5 0.0 44 83 57 108 17 113 0.74 Lipase (class 3) Lipase_3 PF01764.25 142 NAAH01000003_00003 - 239 0.018 14.9 0.0 2 2 1 2.7e+03 -1.9 0.0 46 71 167 192 141 194 0.65 Lipase (class 3) Abhydrolase_4 PF08386.10 103 NAAH01000003_00003 - 239 0.053 13.6 0.0 1 1 3.2e-05 0.083 13.0 0.0 32 65 182 215 169 238 0.78 TAP-like protein Rota_VP2 PF05087.12 884 NAAH01000003_00003 - 239 0.056 11.6 0.0 1 1 2.7e-05 0.069 11.3 0.0 724 781 52 109 43 136 0.81 Rotavirus VP2 protein PhdYeFM_antitox PF02604.19 75 NAAH01000003_00004 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system Dala_Dala_lig_C PF07478.13 204 NAAH01000003_00005 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 NAAH01000003_00005 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 NAAH01000003_00005 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 NAAH01000003_00005 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 NAAH01000003_00005 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 NAAH01000003_00005 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 NAAH01000003_00005 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 NAAH01000003_00005 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 NAAH01000003_00005 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain HHH_5 PF14520.6 57 NAAH01000003_00006 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 NAAH01000003_00006 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 NAAH01000003_00006 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 NAAH01000003_00006 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 NAAH01000003_00006 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 NAAH01000003_00006 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 NAAH01000003_00006 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 NAAH01000003_00006 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 NAAH01000003_00006 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 NAAH01000003_00006 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 NAAH01000003_00006 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 NAAH01000003_00006 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 NAAH01000003_00006 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 NAAH01000003_00006 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 NAAH01000003_00006 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 NAAH01000003_00006 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 NAAH01000003_00006 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 NAAH01000003_00006 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 NAAH01000003_00006 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 NAAH01000003_00006 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 NAAH01000003_00006 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 NAAH01000003_00006 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda FapA PF03961.13 454 NAAH01000003_00007 - 619 3.5e-30 105.0 37.0 1 1 5.8e-34 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 NAAH01000003_00007 - 619 0.027 13.8 8.1 1 1 6.8e-06 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein MurJ PF03023.14 452 NAAH01000003_00008 - 483 1e-91 307.8 60.1 1 1 9.5e-96 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ tRNA-synt_1e PF01406.19 301 NAAH01000003_00009 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 NAAH01000003_00009 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 NAAH01000003_00009 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 NAAH01000003_00009 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 NAAH01000003_00009 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 NAAH01000003_00009 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 NAAH01000003_00009 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 NAAH01000003_00009 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 NAAH01000003_00009 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 NAAH01000003_00009 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 NAAH01000003_00009 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 NAAH01000003_00009 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) ABC_membrane PF00664.23 274 NAAH01000003_00010 - 580 4.4e-48 164.3 8.4 1 1 3.2e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 NAAH01000003_00010 - 580 4.9e-31 108.1 0.1 1 1 5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 NAAH01000003_00010 - 580 6e-10 38.9 5.9 1 1 7.7e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 NAAH01000003_00010 - 580 0.00081 19.3 0.2 1 2 4.1 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 NAAH01000003_00010 - 580 0.00081 19.3 0.2 2 2 1.1e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 NAAH01000003_00010 - 580 0.0025 18.1 0.4 1 1 1.5e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 NAAH01000003_00010 - 580 0.0056 16.9 0.2 1 1 2.6e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 NAAH01000003_00010 - 580 0.0098 15.6 0.1 1 1 2.3e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 NAAH01000003_00010 - 580 0.024 15.0 0.3 1 3 0.91 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 NAAH01000003_00010 - 580 0.024 15.0 0.3 2 3 1.3e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 NAAH01000003_00010 - 580 0.024 15.0 0.3 3 3 0.83 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 NAAH01000003_00010 - 580 0.035 14.5 0.0 1 1 5.2e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 NAAH01000003_00010 - 580 0.094 12.5 0.7 1 2 4.1 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 NAAH01000003_00010 - 580 0.094 12.5 0.7 2 2 0.00011 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain DHO_dh PF01180.21 295 NAAH01000003_00011 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 NAAH01000003_00011 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 NAAH01000003_00011 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 NAAH01000003_00011 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 NAAH01000003_00011 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family Peptidase_M16_C PF05193.21 183 NAAH01000003_00012 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 NAAH01000003_00012 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 NAAH01000003_00012 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 NAAH01000003_00012 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 NAAH01000003_00012 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 NAAH01000003_00012 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHDPS PF00701.22 289 NAAH01000003_00013 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 NAAH01000003_00013 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 NAAH01000003_00013 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 adh_short_C2 PF13561.6 234 NAAH01000003_00014 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 NAAH01000003_00014 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 NAAH01000003_00014 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 NAAH01000003_00014 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 NAAH01000003_00014 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif Lactamase_B PF00753.27 197 NAAH01000003_00016 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 NAAH01000003_00016 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain NAD_synthase PF02540.17 242 NAAH01000003_00017 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 NAAH01000003_00017 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 NAAH01000003_00017 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 NAAH01000003_00017 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 NAAH01000003_00017 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 NAAH01000003_00017 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 NAAH01000003_00017 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 NAAH01000003_00017 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 NAAH01000003_00017 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family LpxK PF02606.14 327 NAAH01000003_00018 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 NAAH01000003_00018 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 NAAH01000003_00018 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 NAAH01000003_00018 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) PALP PF00291.25 294 NAAH01000003_00019 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 NAAH01000003_00019 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 NAAH01000003_00019 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 NAAH01000003_00019 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 NAAH01000003_00019 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 NAAH01000003_00019 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain CTP_transf_3 PF02348.19 221 NAAH01000003_00020 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 NAAH01000003_00020 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 NAAH01000003_00020 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 NAAH01000003_00020 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 NAAH01000003_00020 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain MAF_flag10 PF01973.18 171 NAAH01000019_00001 - 462 3.7e-42 143.9 0.7 1 2 6.1e-46 5.4e-42 143.4 0.1 2 170 59 226 58 227 0.91 Protein of unknown function DUF115 MAF_flag10 PF01973.18 171 NAAH01000019_00001 - 462 3.7e-42 143.9 0.7 2 2 0.84 7.5e+03 -3.5 0.0 60 91 359 390 358 395 0.70 Protein of unknown function DUF115 Med15_fungi PF05397.12 112 NAAH01000019_00001 - 462 0.011 16.0 0.7 1 2 0.041 3.7e+02 1.4 0.0 78 108 260 290 243 292 0.83 Mediator complex subunit 15 Med15_fungi PF05397.12 112 NAAH01000019_00001 - 462 0.011 16.0 0.7 2 2 1.6e-05 0.15 12.4 0.2 56 105 339 388 325 394 0.85 Mediator complex subunit 15 # # Program: hmmscan # Version: 3.1b2 (February 2015) # Pipeline mode: SCAN # Query file: total.faa # Target file: /mnt/DGK_KLIF/data/db/pfam/Pfam-A.hmm # Option settings: hmmscan --tblout pfam_table.txt --domtblout pfam_domtbl.txt -E 1E-1 --cpu 16 /mnt/DGK_KLIF/data/db/pfam/Pfam-A.hmm total.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Campylobacter_plasmids_Linda/cleanedup/nohit # Date: Mon Sep 27 11:34:03 2021 # [ok]