# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- RNA_helicase PF00910.22 AAFJ01000010_00093 - 1.6e-05 16.0 0.0 5.7e-05 14.2 0.0 2.0 2 0 0 2 2 2 1 RNA helicase RNA_helicase PF00910.22 AAFL01000016_00026 - 0.00017 12.7 0.0 0.00098 10.2 0.0 2.2 2 0 0 2 2 2 1 RNA helicase MobA_MobL PF03389.15 AAFL01000016_00027 - 5e-82 265.5 0.0 1.9e-81 263.6 0.0 1.9 2 0 0 2 2 2 1 MobA/MobL family RNA_helicase PF00910.22 AAFL01000021_00004 - 7.3e-05 13.9 0.0 0.00013 13.1 0.0 1.5 1 0 0 1 1 1 1 RNA helicase HTH_24 PF13412.6 AAFL01000021_00009 - 9.4e-07 19.1 0.2 1.2e-06 18.7 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 AJ489618_00004 - 0.00013 12.3 0.3 0.00019 11.7 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 AVFM02000074_00004 - 4.8e-05 14.4 0.0 0.00014 13.0 0.0 1.8 2 0 0 2 2 2 1 RNA helicase RNA_helicase PF00910.22 AY190287_00001 - 4.9e-05 14.4 0.0 0.00014 13.0 0.0 1.8 2 0 0 2 2 2 1 RNA helicase RNA_helicase PF00910.22 AY701528_00008 - 0.00011 13.3 0.0 0.00021 12.4 0.0 1.5 1 0 0 1 1 1 1 RNA helicase RNA_helicase PF00910.22 AY701528_00016 - 2.3e-08 25.1 0.4 6.3e-07 20.5 0.0 2.3 2 0 0 2 2 2 1 RNA helicase RNA_helicase PF00910.22 AY701528_00019 - 9e-05 13.6 0.0 0.00016 12.8 0.0 1.5 1 0 0 1 1 1 1 RNA helicase RNA_helicase PF00910.22 CP013735_00025 - 4.8e-05 14.4 0.0 0.00014 13.0 0.0 1.8 2 0 0 2 2 2 1 RNA helicase HTH_24 PF13412.6 CP014345_00055 - 9.9e-07 19.0 0.2 1.2e-06 18.7 0.2 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 CP017417_00028 - 9.9e-07 19.0 0.2 1.2e-06 18.7 0.2 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 CP017879_00030 - 6.1e-05 14.1 0.0 0.00014 12.9 0.0 1.7 1 0 0 1 1 1 1 RNA helicase RNA_helicase PF00910.22 CP018901_00004 - 6.3e-05 14.1 0.0 0.00012 13.2 0.0 1.5 1 0 0 1 1 1 1 RNA helicase MobA_MobL PF03389.15 CP018901_00010 - 4.6e-53 170.8 0.0 5.3e-53 170.6 0.0 1.0 1 0 0 1 1 1 1 MobA/MobL family RNA_helicase PF00910.22 CP018901_00011 - 0.00017 12.7 0.0 0.00098 10.2 0.0 2.2 2 0 0 2 2 2 1 RNA helicase HTH_24 PF13412.6 CP018901_00134 - 9.4e-07 19.1 0.2 1.2e-06 18.7 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 CP020480_00022 - 1.6e-05 16.0 0.0 5.7e-05 14.2 0.0 2.0 2 0 0 2 2 2 1 RNA helicase Rep_2 PF01719.17 CP020869_00001 - 4.1e-52 167.3 3.7 5e-52 167.0 3.7 1.0 1 0 0 1 1 1 1 Plasmid replication protein # # Program: hmmscan # Version: 3.1b2 (February 2015) # Pipeline mode: SCAN # Query file: total.faa # Target file: /home/depict/plasmidtyping/plasmid_replicons.hmm # Option settings: hmmscan --tblout total_rep_table.txt --domtblout total_rep_domtbl.txt --acc --cpu 16 /home/depict/plasmidtyping/plasmid_replicons.hmm total.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Campylobacter_plasmids_Linda/cleanedup/faa/no-hit # Date: Mon Feb 22 21:53:04 2021 # [ok]