# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- RNA_helicase PF00910.22 107 AAFJ01000010_00093 - 329 1.6e-05 16.0 0.0 1 2 0.43 10 -2.7 0.0 14 43 13 42 11 45 0.69 RNA helicase RNA_helicase PF00910.22 107 AAFJ01000010_00093 - 329 1.6e-05 16.0 0.0 2 2 2.4e-06 5.7e-05 14.2 0.0 1 21 163 183 163 223 0.85 RNA helicase RNA_helicase PF00910.22 107 AAFL01000016_00026 - 623 0.00017 12.7 0.0 1 2 0.16 3.7 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 AAFL01000016_00026 - 623 0.00017 12.7 0.0 2 2 4.1e-05 0.00098 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase MobA_MobL PF03389.15 222 AAFL01000016_00027 - 498 5e-82 265.5 0.0 1 2 8.1e-83 1.9e-81 263.6 0.0 1 222 17 246 17 246 0.99 MobA/MobL family MobA_MobL PF03389.15 222 AAFL01000016_00027 - 498 5e-82 265.5 0.0 2 2 0.095 2.3 -1.5 0.1 7 188 309 339 297 367 0.59 MobA/MobL family RNA_helicase PF00910.22 107 AAFL01000021_00004 - 181 7.3e-05 13.9 0.0 1 1 5.3e-06 0.00013 13.1 0.0 1 35 7 42 7 77 0.71 RNA helicase HTH_24 PF13412.6 48 AAFL01000021_00009 - 44 9.4e-07 19.1 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 AJ489618_00004 - 67 0.00013 12.3 0.3 1 1 7.9e-06 0.00019 11.7 0.3 7 30 9 32 1 32 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 AVFM02000074_00004 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 AVFM02000074_00004 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 AY190287_00001 - 332 4.9e-05 14.4 0.0 1 2 0.37 8.8 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 AY190287_00001 - 332 4.9e-05 14.4 0.0 2 2 5.9e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 AY701528_00008 - 181 0.00011 13.3 0.0 1 1 8.7e-06 0.00021 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase RNA_helicase PF00910.22 107 AY701528_00016 - 252 2.3e-08 25.1 0.4 1 2 0.01 0.24 2.6 0.1 41 97 24 80 4 83 0.71 RNA helicase RNA_helicase PF00910.22 107 AY701528_00016 - 252 2.3e-08 25.1 0.4 2 2 2.6e-08 6.3e-07 20.5 0.0 1 74 103 187 103 206 0.86 RNA helicase RNA_helicase PF00910.22 107 AY701528_00019 - 181 9e-05 13.6 0.0 1 1 6.7e-06 0.00016 12.8 0.0 1 35 7 42 7 77 0.71 RNA helicase RNA_helicase PF00910.22 107 CP013735_00025 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CP013735_00025 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 CP014345_00055 - 44 9.9e-07 19.0 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP017417_00028 - 44 9.9e-07 19.0 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 CP017879_00030 - 337 6.1e-05 14.1 0.0 1 1 6e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 CP018901_00004 - 172 6.3e-05 14.1 0.0 1 1 4.8e-06 0.00012 13.2 0.0 1 35 7 42 7 77 0.71 RNA helicase MobA_MobL PF03389.15 222 CP018901_00010 - 183 4.6e-53 170.8 0.0 1 1 2.2e-54 5.3e-53 170.6 0.0 1 133 17 154 17 178 0.95 MobA/MobL family RNA_helicase PF00910.22 107 CP018901_00011 - 623 0.00017 12.7 0.0 1 2 0.16 3.7 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 CP018901_00011 - 623 0.00017 12.7 0.0 2 2 4.1e-05 0.00098 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase HTH_24 PF13412.6 48 CP018901_00134 - 44 9.4e-07 19.1 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 CP020480_00022 - 329 1.6e-05 16.0 0.0 1 2 0.43 10 -2.7 0.0 14 43 13 42 11 45 0.69 RNA helicase RNA_helicase PF00910.22 107 CP020480_00022 - 329 1.6e-05 16.0 0.0 2 2 2.4e-06 5.7e-05 14.2 0.0 1 21 163 183 163 223 0.85 RNA helicase Rep_2 PF01719.17 182 CP020869_00001 - 198 4.1e-52 167.3 3.7 1 1 2.1e-53 5e-52 167.0 3.7 2 182 9 190 7 190 0.93 Plasmid replication protein # # Program: hmmscan # Version: 3.1b2 (February 2015) # Pipeline mode: SCAN # Query file: total.faa # Target file: /home/depict/plasmidtyping/plasmid_replicons.hmm # Option settings: hmmscan --tblout total_rep_table.txt --domtblout total_rep_domtbl.txt --acc --cpu 16 /home/depict/plasmidtyping/plasmid_replicons.hmm total.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Campylobacter_plasmids_Linda/cleanedup/faa/no-hit # Date: Mon Feb 22 21:53:04 2021 # [ok]