# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- replication_PCLA_3378828 - AAFJ01000010_00030 - 1.1e-96 316.6 8.8 1.3e-96 316.3 8.8 1.0 1 0 0 1 1 1 1 - replication_PCLA_950877 - AAFJ01000010_00034 - 1.1e-14 48.0 6.7 1e-13 44.9 6.7 2.1 1 1 0 1 1 1 1 - replication_PCLA_923851 - AAFJ01000010_00034 - 1.2e-10 34.9 0.3 7.9e-08 25.5 0.1 2.1 2 0 0 2 2 2 2 - replication_PCLA_3456122 - AAFJ01000010_00034 - 2.4e-09 30.8 4.9 4.7e-09 29.8 1.8 2.2 2 1 0 2 2 2 1 - replication_PCLA_3210411 - AAFJ01000010_00034 - 1.9e-08 27.5 4.9 4.9e-08 26.2 4.9 1.8 1 1 0 1 1 1 1 - replication_PCLA_517004 - AAFJ01000010_00034 - 1.2e-06 21.4 0.3 1e-05 18.4 0.1 2.2 2 1 0 2 2 2 1 - replication_PCLA_4905789 - AAFJ01000010_00034 - 4.2e-06 20.1 0.0 0.00027 14.1 0.0 2.0 2 0 0 2 2 2 2 - replication_PCLA_3383983 - AAFJ01000010_00034 - 6.4e-06 19.1 0.0 9.6e-06 18.5 0.0 1.5 1 1 0 1 1 1 1 - replication_PCLA_3234320 - AAFJ01000010_00047 - 0.00023 15.1 0.1 0.00033 14.6 0.1 1.2 1 0 0 1 1 1 1 - replication_PCLA_3408341 - AAFJ01000010_00107 - 4.5e-21 69.2 0.7 5.1e-21 69.0 0.7 1.0 1 0 0 1 1 1 1 - replication_PCLA_3629143 - AAFJ01000010_00107 - 3e-13 43.6 2.7 3.9e-13 43.2 2.7 1.1 1 0 0 1 1 1 1 - replication_PCLA_5502065 - AAFJ01000010_00107 - 3.2e-09 30.3 0.0 5.9e-09 29.4 0.0 1.4 1 1 0 1 1 1 1 - replication_PCLA_865073 - AAFJ01000010_00107 - 3.9e-06 19.7 0.0 1.3e-05 18.0 0.0 1.8 2 0 0 2 2 2 1 - replication_PCLA_648270 - AAFJ01000010_00107 - 0.00019 14.1 0.0 0.00034 13.3 0.0 1.3 1 0 0 1 1 1 1 - replication_PCLA_3503058 - AAFJ01000010_00117 - 2.5e-07 24.5 12.6 2.5e-07 24.5 12.6 1.8 1 1 1 2 2 2 1 - replication_PCLA_2756556 - AAFJ01000010_00117 - 0.00012 16.2 6.9 0.00012 16.2 6.9 1.9 2 0 0 2 2 2 1 - replication_PCLA_3629143 - AAFL01000027_00001 - 1.4e-06 21.8 0.7 0.0024 11.3 0.1 2.2 1 1 1 2 2 2 2 - replication_PCLA_5030731 - AAFL01000029_00002 - 0.00023 15.0 0.0 0.00025 14.9 0.0 1.0 1 0 0 1 1 1 1 - replication_PCLA_3575479 - AAFL01000029_00007 - 0.00023 14.2 0.0 0.00023 14.2 0.0 1.0 1 0 0 1 1 1 1 - replication_PCLA_5030731 - AAFL01000033_00002 - 0.00023 15.0 0.0 0.00025 14.9 0.0 1.0 1 0 0 1 1 1 1 - replication_PCLA_865073 - AJ490186_00001 - 0.00028 13.5 0.0 0.00039 13.1 0.0 1.2 1 0 0 1 1 1 1 - replication_PCLA_989528 - AJ490186_00001 - 0.0012 11.6 0.0 0.0017 11.1 0.0 1.2 1 0 0 1 1 1 1 - replication_PCLA_5030731 - AVFM02000073_00003 - 0.00027 14.7 0.0 0.0003 14.6 0.0 1.0 1 0 0 1 1 1 1 - replication_PCLA_3629143 - AY701528_00029 - 0.00081 12.8 0.1 0.00081 12.8 0.1 1.0 1 0 0 1 1 1 1 - replication_PCLA_865073 - AY701528_00029 - 0.0012 11.5 0.1 0.0012 11.5 0.1 1.0 1 0 0 1 1 1 1 - replication_PCLA_3378828 - CP009044_00078 - 1.2e-89 293.6 8.4 1.5e-89 293.3 8.4 1.0 1 0 0 1 1 1 1 - replication_PCLA_950877 - CP009044_00085 - 8.2e-12 38.6 5.7 2.1e-11 37.3 5.7 1.6 1 1 0 1 1 1 1 - replication_PCLA_923851 - CP009044_00085 - 8.4e-12 38.6 2.0 2.8e-10 33.6 2.0 2.1 1 1 0 1 1 1 1 - replication_PCLA_3210411 - CP009044_00085 - 4.8e-09 29.5 4.1 3.7e-08 26.6 4.1 2.0 1 1 0 1 1 1 1 - replication_PCLA_4905789 - CP009044_00085 - 6.4e-07 22.8 0.0 2.3e-05 17.7 0.0 2.0 2 0 0 2 2 2 1 - replication_PCLA_3456122 - CP009044_00085 - 8.2e-07 22.5 3.8 1.7e-06 21.5 0.5 2.0 2 0 0 2 2 2 1 - replication_PCLA_517004 - CP009044_00085 - 1.2e-06 21.5 0.3 8.8e-06 18.6 0.1 2.2 2 1 0 2 2 2 1 - replication_PCLA_3383983 - CP009044_00085 - 7.1e-06 19.0 0.0 1.3e-05 18.0 0.0 1.5 1 1 0 1 1 1 1 - replication_PCLA_5827592 - CP009044_00093 - 0.00023 14.8 0.1 0.00028 14.5 0.1 1.2 1 0 0 1 1 1 1 - replication_PCLA_3575479 - CP013735_00001 - 4.4e-05 16.6 0.5 0.0001 15.4 0.5 1.6 1 0 0 1 1 1 1 - replication_PCLA_3629143 - CP014345_00016 - 1.4e-06 21.8 0.7 0.0024 11.3 0.1 2.2 1 1 1 2 2 2 2 - replication_PCLA_5030731 - CP014345_00017 - 0.00023 15.0 0.0 0.00025 14.9 0.0 1.0 1 0 0 1 1 1 1 - replication_PCLA_3629143 - CP014345_00025 - 1.4e-06 21.8 0.7 0.0024 11.3 0.1 2.2 1 1 1 2 2 2 2 - replication_PCLA_5030731 - CP014345_00026 - 0.00023 15.0 0.0 0.00025 14.9 0.0 1.0 1 0 0 1 1 1 1 - replication_PCLA_3575479 - CP014345_00030 - 4.6e-05 16.5 0.5 0.0001 15.4 0.5 1.6 1 0 0 1 1 1 1 - replication_PCLA_764866 - CP014345_00057 - 0.00081 12.8 0.1 0.00083 12.8 0.1 1.1 1 0 0 1 1 1 1 - replication_PCLA_5762348 - CP014345_00080 - 0.00033 14.1 0.2 0.0016 11.8 0.0 2.1 3 0 0 3 3 3 1 - replication_PCLA_3629143 - CP017417_00001 - 1.4e-06 21.8 0.7 0.0024 11.3 0.1 2.2 1 1 1 2 2 2 2 - replication_PCLA_764866 - CP017417_00030 - 0.00081 12.8 0.1 0.00083 12.8 0.1 1.1 1 0 0 1 1 1 1 - replication_PCLA_5762348 - CP017417_00048 - 0.00033 14.1 0.2 0.0016 11.8 0.0 2.1 3 0 0 3 3 3 1 - replication_PCLA_3575479 - CP017417_00074 - 4.6e-05 16.5 0.5 0.0001 15.4 0.5 1.6 1 0 0 1 1 1 1 - replication_PCLA_3629143 - CP017879_00049 - 6.2e-06 19.7 0.6 0.008 9.5 0.1 2.2 1 1 1 2 2 2 2 - replication_PCLA_5030731 - CP017879_00050 - 8.3e-05 16.4 0.0 8.9e-05 16.3 0.0 1.0 1 0 0 1 1 1 1 - replication_PCLA_3503058 - CP017879_00054 - 1.4e-06 22.1 5.6 1.5e-06 22.0 5.6 1.1 1 0 0 1 1 1 1 - replication_PCLA_2756556 - CP017879_00054 - 8.9e-05 16.6 1.6 9.7e-05 16.5 1.6 1.2 1 0 0 1 1 1 1 - replication_PCLA_3082051 - CP017879_00054 - 0.00021 15.1 0.1 0.00021 15.1 0.1 1.1 1 0 0 1 1 1 1 - replication_PCLA_5685104 - CP017879_00054 - 0.00021 15.4 1.8 0.00025 15.2 1.8 1.2 1 0 0 1 1 1 1 - replication_PCLA_5610374 - CP017879_00054 - 0.00024 15.0 0.1 0.00024 15.0 0.1 1.1 1 0 0 1 1 1 1 - replication_PCLA_3292546 - CP017879_00054 - 0.00048 13.9 0.8 0.0018 12.0 0.7 1.8 1 1 0 1 1 1 1 - replication_PCLA_3122541 - CP017879_00054 - 0.0012 13.2 4.0 0.0013 13.0 4.0 1.1 1 0 0 1 1 1 1 - replication_PCLA_3575479 - CP018901_00044 - 4.6e-05 16.5 0.5 0.0001 15.4 0.5 1.6 1 0 0 1 1 1 1 - replication_PCLA_5030731 - CP018901_00047 - 0.00023 15.0 0.0 0.00025 14.9 0.0 1.0 1 0 0 1 1 1 1 - replication_PCLA_3629143 - CP018901_00048 - 1e-06 22.3 0.8 0.0027 11.1 0.0 2.2 1 1 1 2 2 2 2 - replication_PCLA_5030731 - CP018901_00057 - 0.00023 15.0 0.0 0.00025 14.9 0.0 1.0 1 0 0 1 1 1 1 - replication_PCLA_3629143 - CP018901_00058 - 1e-06 22.3 0.8 0.0027 11.1 0.0 2.2 1 1 1 2 2 2 2 - replication_PCLA_3503058 - CP020480_00001 - 4e-07 23.9 11.2 4e-07 23.9 11.2 1.8 1 1 1 2 2 2 1 - replication_PCLA_2756556 - CP020480_00001 - 8.7e-05 16.6 6.0 8.7e-05 16.6 6.0 1.9 2 0 0 2 2 2 1 - replication_PCLA_3408341 - CP020480_00008 - 2.6e-21 70.0 0.7 3e-21 69.8 0.7 1.0 1 0 0 1 1 1 1 - replication_PCLA_3629143 - CP020480_00008 - 3.4e-13 43.4 2.9 4.3e-13 43.1 2.9 1.2 1 0 0 1 1 1 1 - replication_PCLA_5502065 - CP020480_00008 - 2.9e-09 30.4 0.0 5.4e-09 29.5 0.0 1.4 1 1 0 1 1 1 1 - replication_PCLA_865073 - CP020480_00008 - 4.1e-06 19.6 0.0 1.3e-05 18.0 0.0 1.8 2 0 0 2 2 2 1 - replication_PCLA_648270 - CP020480_00008 - 0.00019 14.1 0.0 0.00034 13.3 0.0 1.3 1 0 0 1 1 1 1 - replication_PCLA_5755538 - CP020869_00001 - 4.9e-38 124.8 1.3 5.7e-38 124.5 1.3 1.0 1 0 0 1 1 1 1 - replication_PCLA_5763998 - CP020869_00001 - 7.7e-32 104.6 4.0 9.1e-32 104.3 4.0 1.0 1 0 0 1 1 1 1 - replication_PCLA_3000159 - CP020869_00001 - 2.9e-12 40.7 2.6 1.5e-11 38.4 0.4 2.0 1 1 1 2 2 2 1 - replication_PCLA_989528 - CP023447_00033 - 1.7e-08 27.6 0.5 1.4e-05 18.0 0.0 2.2 2 0 0 2 2 2 2 - replication_PCLA_3629143 - CP023447_00033 - 4.7e-08 26.6 3.1 7e-06 19.5 0.1 2.7 2 1 1 3 3 3 2 - replication_PCLA_865073 - CP023447_00033 - 1.9e-07 24.0 0.4 8.2e-07 21.9 0.4 2.0 1 1 0 1 1 1 1 - replication_PCLA_3408341 - CP023447_00033 - 9.1e-06 19.2 0.2 2.1e-05 18.0 0.0 1.7 2 0 0 2 2 2 1 - replication_PCLA_892038 - CP023447_00033 - 0.00015 14.6 0.4 0.0011 11.7 0.0 2.0 2 0 0 2 2 2 1 - replication_PCLA_5502065 - CP023447_00033 - 0.00043 13.5 0.1 0.00095 12.4 0.1 1.6 1 0 0 1 1 1 1 - replication_PCLA_648270 - CP023447_00033 - 0.0013 11.4 0.3 0.016 7.8 0.0 2.1 2 0 0 2 2 2 1 - replication_PCLA_865073 - CP023447_00068 - 3e-35 115.5 0.1 4.1e-35 115.1 0.1 1.1 1 0 0 1 1 1 1 - replication_PCLA_989528 - CP023447_00068 - 2.5e-26 86.3 0.0 3e-26 86.1 0.0 1.0 1 0 0 1 1 1 1 - replication_PCLA_648270 - CP023447_00068 - 2e-20 66.7 0.0 3.2e-20 66.1 0.0 1.3 1 0 0 1 1 1 1 - replication_PCLA_892038 - CP023447_00068 - 2e-17 56.9 0.0 2.7e-17 56.6 0.0 1.2 1 0 0 1 1 1 1 - replication_PCLA_3213457 - CP023447_00068 - 1.5e-13 43.8 0.0 1.8e-13 43.6 0.0 1.1 1 0 0 1 1 1 1 - replication_PCLA_3629143 - CP023447_00068 - 3.9e-09 30.1 2.6 6.1e-07 23.0 0.1 2.3 2 1 0 2 2 2 2 - replication_PCLA_3408341 - CP023447_00068 - 0.00027 14.4 0.4 0.00063 13.2 0.1 1.7 2 0 0 2 2 2 1 - replication_PCLA_903699 - CP023447_00069 - 1.5e-15 51.8 0.7 1.1e-13 45.6 0.7 2.1 1 1 0 1 1 1 1 - replication_PCLA_2342983 - CP023447_00069 - 3.6e-13 42.9 0.3 4.5e-13 42.6 0.3 1.1 1 0 0 1 1 1 1 - replication_PCLA_5778867 - CP023447_00069 - 1.2e-12 41.3 0.7 1.2e-12 41.3 0.7 1.3 1 1 0 1 1 1 1 - replication_PCLA_3502477 - CP023447_00069 - 2.4e-12 40.8 4.0 4.3e-12 39.9 2.2 2.0 1 1 1 2 2 2 1 - replication_PCLA_940583 - CP023447_00069 - 6.2e-12 39.3 0.3 7.3e-12 39.1 0.3 1.2 1 0 0 1 1 1 1 - replication_PCLA_3641143 - CP023447_00069 - 1.4e-11 38.1 1.6 2e-09 31.0 0.8 2.1 2 0 0 2 2 2 1 - replication_PCLA_2464595 - CP023447_00069 - 5.2e-11 36.3 0.5 8.1e-11 35.6 0.5 1.3 1 1 0 1 1 1 1 - replication_PCLA_2982187 - CP023447_00069 - 1.1e-10 35.8 1.0 1.2e-08 29.0 1.0 2.1 1 1 0 1 1 1 1 - replication_PCLA_5519776 - CP023447_00069 - 1.7e-10 34.7 0.2 4e-08 27.0 0.2 2.2 1 1 0 1 1 1 1 - replication_PCLA_898683 - CP023447_00069 - 2.6e-10 33.7 0.9 3.1e-10 33.5 0.9 1.3 1 1 0 1 1 1 1 - replication_PCLA_544555 - CP023447_00069 - 2.5e-09 30.8 1.4 2.8e-09 30.6 0.3 1.6 2 0 0 2 2 2 1 - replication_PCLA_3657890 - CP023447_00069 - 5.1e-09 29.5 0.1 7.2e-09 29.0 0.1 1.2 1 0 0 1 1 1 1 - replication_PCLA_2401106 - CP023447_00069 - 6.5e-09 29.1 0.3 8.9e-09 28.6 0.3 1.2 1 0 0 1 1 1 1 - replication_PCLA_514545 - CP023447_00069 - 7e-09 29.0 0.0 1.1e-08 28.3 0.0 1.3 1 0 0 1 1 1 1 - replication_PCLA_782170 - CP023447_00069 - 8e-09 28.9 0.0 1.2e-08 28.3 0.0 1.2 1 0 0 1 1 1 1 - replication_PCLA_2317425 - CP023447_00069 - 2.3e-08 27.6 0.1 3.6e-08 26.9 0.1 1.3 1 0 0 1 1 1 1 - replication_PCLA_4892644 - CP023447_00069 - 3.1e-08 26.9 0.1 3.5e-08 26.7 0.1 1.1 1 0 0 1 1 1 1 - replication_PCLA_5884962 - CP023447_00069 - 5.6e-08 25.3 0.1 6.7e-08 25.0 0.1 1.1 1 0 0 1 1 1 1 - replication_PCLA_892037 - CP023447_00069 - 5.8e-08 25.7 0.5 8.3e-08 25.2 0.3 1.3 1 1 0 1 1 1 1 - replication_PCLA_808359 - CP023447_00069 - 7.4e-08 25.9 0.2 1.1e-07 25.3 0.2 1.2 1 0 0 1 1 1 1 - replication_PCLA_3370140 - CP023447_00069 - 9.5e-08 25.4 0.2 1.9e-07 24.4 0.1 1.5 2 0 0 2 2 2 1 - replication_PCLA_2982043 - CP023447_00069 - 2.6e-07 24.2 0.3 4.3e-07 23.5 0.3 1.4 1 1 0 1 1 1 1 - replication_PCLA_2343017 - CP023447_00069 - 2.7e-07 23.7 0.2 4.3e-07 23.1 0.2 1.3 1 0 0 1 1 1 1 - replication_PCLA_3489639 - CP023447_00069 - 2.9e-07 23.8 0.1 4.4e-07 23.2 0.1 1.4 1 0 0 1 1 1 1 - replication_PCLA_2317423 - CP023447_00069 - 4.2e-07 23.2 0.1 5.7e-07 22.8 0.1 1.3 1 0 0 1 1 1 1 - replication_PCLA_892053 - CP023447_00069 - 4.5e-07 23.0 0.2 9.6e-07 21.9 0.1 1.6 1 1 0 1 1 1 1 - replication_PCLA_2334676 - CP023447_00069 - 6.8e-07 22.7 0.0 9.9e-07 22.2 0.0 1.2 1 0 0 1 1 1 1 - replication_PCLA_3550012 - CP023447_00069 - 1.1e-06 21.9 0.2 1.6e-06 21.3 0.2 1.3 1 0 0 1 1 1 1 - replication_PCLA_760434 - CP023447_00069 - 2.4e-06 20.6 0.0 3.5e-06 20.1 0.0 1.3 1 0 0 1 1 1 1 - replication_PCLA_3441299 - CP023447_00069 - 7.2e-06 19.1 0.1 1.1e-05 18.5 0.1 1.4 1 0 0 1 1 1 1 - replication_PCLA_5893130 - CP023447_00069 - 1.1e-05 18.6 0.4 1.3e-05 18.4 0.4 1.3 1 0 0 1 1 1 1 - replication_PCLA_2757112 - CP023447_00069 - 2.6e-05 17.5 0.0 3.4e-05 17.1 0.0 1.2 1 0 0 1 1 1 1 - replication_PCLA_5824767 - CP023447_00069 - 6.7e-05 16.3 0.0 9.8e-05 15.8 0.0 1.2 1 0 0 1 1 1 1 - replication_PCLA_3261620 - CP023447_00087 - 0.0016 11.7 0.0 0.0026 11.0 0.0 1.3 1 0 0 1 1 1 1 - # # Program: hmmscan # Version: 3.1b2 (February 2015) # Pipeline mode: SCAN # Query file: total.faa # Target file: /home/depict/plasmidtyping/db/platon_replication # Option settings: hmmscan --tblout platon_rep_table.txt --domtblout platon_rep_domtbl.txt --acc -E 1E-1 --cpu 16 /home/depict/plasmidtyping/db/platon_replication total.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Campylobacter_plasmids_Linda/cleanedup/faa/no-hit # Date: Mon Feb 22 22:07:56 2021 # [ok]