# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- RNA_helicase PF00910.22 107 AAFJ01000010_00093 - 329 1.6e-05 16.0 0.0 1 2 0.43 10 -2.7 0.0 14 43 13 42 11 45 0.69 RNA helicase RNA_helicase PF00910.22 107 AAFJ01000010_00093 - 329 1.6e-05 16.0 0.0 2 2 2.4e-06 5.7e-05 14.2 0.0 1 21 163 183 163 223 0.85 RNA helicase RNA_helicase PF00910.22 107 AAFL01000016_00026 - 623 0.00017 12.7 0.0 1 2 0.16 3.7 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 AAFL01000016_00026 - 623 0.00017 12.7 0.0 2 2 4.1e-05 0.00098 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase MobA_MobL PF03389.15 222 AAFL01000016_00027 - 498 5e-82 265.5 0.0 1 2 8.1e-83 1.9e-81 263.6 0.0 1 222 17 246 17 246 0.99 MobA/MobL family MobA_MobL PF03389.15 222 AAFL01000016_00027 - 498 5e-82 265.5 0.0 2 2 0.095 2.3 -1.5 0.1 7 188 309 339 297 367 0.59 MobA/MobL family RNA_helicase PF00910.22 107 AAFL01000021_00004 - 181 7.3e-05 13.9 0.0 1 1 5.3e-06 0.00013 13.1 0.0 1 35 7 42 7 77 0.71 RNA helicase HTH_24 PF13412.6 48 AAFL01000021_00009 - 44 9.4e-07 19.1 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 AANQ01000006_00029 - 335 6.2e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 AJ489618_00004 - 67 0.00013 12.3 0.3 1 1 7.9e-06 0.00019 11.7 0.3 7 30 9 32 1 32 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 AVFM02000074_00004 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 AVFM02000074_00004 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 AY190287_00001 - 332 4.9e-05 14.4 0.0 1 2 0.37 8.8 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 AY190287_00001 - 332 4.9e-05 14.4 0.0 2 2 5.9e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 AY394560_00041 - 335 6.2e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 AY394561_00043 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 AY394561_00043 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 AY701528_00008 - 181 0.00011 13.3 0.0 1 1 8.7e-06 0.00021 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase RNA_helicase PF00910.22 107 AY701528_00016 - 252 2.3e-08 25.1 0.4 1 2 0.01 0.24 2.6 0.1 41 97 24 80 4 83 0.71 RNA helicase RNA_helicase PF00910.22 107 AY701528_00016 - 252 2.3e-08 25.1 0.4 2 2 2.6e-08 6.3e-07 20.5 0.0 1 74 103 187 103 206 0.86 RNA helicase RNA_helicase PF00910.22 107 AY701528_00019 - 181 9e-05 13.6 0.0 1 1 6.7e-06 0.00016 12.8 0.0 1 35 7 42 7 77 0.71 RNA helicase RNA_helicase PF00910.22 107 AY714214_00031 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 AY714214_00031 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 CM007863_00016 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CM007863_00016 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 CM007865_00012 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CM007865_00012 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 CM007865_00039 - 314 3.2e-06 17.4 0.1 1 2 8.2e-07 2e-05 14.9 0.1 17 35 10 28 9 29 0.93 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CM007865_00039 - 314 3.2e-06 17.4 0.1 2 2 0.055 1.3 -0.6 0.0 26 38 98 110 95 112 0.85 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 CP000549_00039 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CP000549_00039 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 CP004067_00045 - 339 6.1e-05 14.1 0.0 1 1 6e-06 0.00015 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 CP004067_00063 - 181 0.00012 13.2 0.0 1 1 8.7e-06 0.00021 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase HTH_24 PF13412.6 48 CP007180_00014 - 314 9.8e-06 15.8 0.0 1 2 5.5e-06 0.00013 12.2 0.0 17 34 10 27 10 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP007180_00014 - 314 9.8e-06 15.8 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 CP007180_00044 - 335 6.2e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 CP007750_00017 - 314 9.8e-06 15.8 0.0 1 2 5.5e-06 0.00013 12.2 0.0 17 34 10 27 10 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP007750_00017 - 314 9.8e-06 15.8 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 CP007750_00040 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CP007750_00040 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 CP010073_00032 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CP010073_00032 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 CP010073_00054 - 314 1e-05 15.8 0.0 1 2 5.9e-06 0.00014 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP010073_00054 - 314 1e-05 15.8 0.0 2 2 0.021 0.5 0.8 0.0 26 39 98 111 94 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 CP011017_00010 - 335 6.2e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 CP013033_00009 - 314 6.2e-06 16.5 0.0 1 2 3.5e-06 8.3e-05 12.9 0.1 17 34 10 27 9 27 0.94 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP013033_00009 - 314 6.2e-06 16.5 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 CP013033_00039 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CP013033_00039 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 CP013035_00039 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CP013035_00039 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 CP013037_00030 - 314 6.2e-06 16.5 0.0 1 2 3.5e-06 8.3e-05 12.9 0.1 17 34 10 27 9 27 0.94 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP013037_00030 - 314 6.2e-06 16.5 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 CP013037_00047 - 330 5.1e-05 14.4 0.0 1 2 0.43 10 -2.7 0.0 43 71 110 139 94 149 0.63 RNA helicase RNA_helicase PF00910.22 107 CP013037_00047 - 330 5.1e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 CP013117_00059 - 63 1.9e-05 14.9 0.0 1 1 1.2e-06 2.9e-05 14.3 0.0 18 37 1 20 1 28 0.89 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 CP013117_00060 - 285 0.00014 13.0 0.2 1 2 0.4 9.6 -2.6 0.1 56 75 53 74 50 92 0.60 RNA helicase RNA_helicase PF00910.22 107 CP013117_00060 - 285 0.00014 13.0 0.2 2 2 2.2e-05 0.00053 11.1 0.0 2 26 96 120 95 174 0.86 RNA helicase HTH_24 PF13412.6 48 CP013117_00064 - 267 0.0002 11.7 0.9 1 2 3.7e-05 0.00088 9.6 0.1 10 34 8 32 7 35 0.86 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP013117_00064 - 267 0.0002 11.7 0.9 2 2 0.058 1.4 -0.7 0.1 27 36 103 112 103 115 0.85 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 CP013117_00094 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CP013117_00094 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 CP013735_00025 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CP013735_00025 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 CP014345_00055 - 44 9.9e-07 19.0 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 CP014743_00056 - 332 4.9e-05 14.4 0.0 1 2 0.37 8.8 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CP014743_00056 - 332 4.9e-05 14.4 0.0 2 2 5.9e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 CP014743_00083 - 314 1e-05 15.7 0.0 1 2 5.9e-06 0.00014 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP014743_00083 - 314 1e-05 15.7 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP014743_00111 - 44 9.9e-07 19.0 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 CP014745_00051 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CP014745_00051 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 CP014745_00078 - 314 1e-05 15.7 0.0 1 2 5.9e-06 0.00014 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP014745_00078 - 314 1e-05 15.7 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP014745_00106 - 44 9.9e-07 19.0 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 CP017026_00004 - 181 6.8e-05 14.0 0.0 1 1 5.3e-06 0.00013 13.1 0.0 1 35 7 42 7 77 0.71 RNA helicase MobA_MobL PF03389.15 222 CP017026_00010 - 498 5e-82 265.5 0.0 1 2 8.1e-83 1.9e-81 263.6 0.0 1 222 17 246 17 246 0.99 MobA/MobL family MobA_MobL PF03389.15 222 CP017026_00010 - 498 5e-82 265.5 0.0 2 2 0.095 2.3 -1.5 0.1 7 188 309 339 297 367 0.59 MobA/MobL family RNA_helicase PF00910.22 107 CP017026_00011 - 623 0.00017 12.7 0.0 1 2 0.16 3.7 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 CP017026_00011 - 623 0.00017 12.7 0.0 2 2 4.1e-05 0.00098 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase RNA_helicase PF00910.22 107 CP017026_00112 - 335 6e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RepL PF05732.11 165 CP017026_00128 - 107 6.9e-20 61.8 0.0 1 1 3.3e-21 8e-20 61.6 0.0 40 135 2 100 1 105 0.89 Firmicute plasmid replication protein (RepL) HTH_24 PF13412.6 48 CP017026_00195 - 44 9.4e-07 19.1 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 CP017230_00045 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CP017230_00045 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 CP017417_00028 - 44 9.9e-07 19.0 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP017418_00004 - 314 1e-05 15.7 0.0 1 2 5.9e-06 0.00014 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP017418_00004 - 314 1e-05 15.7 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 CP017418_00031 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CP017418_00031 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 CP017854_00025 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CP017854_00025 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 CP017857_00040 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CP017857_00040 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 CP018901_00004 - 172 6.3e-05 14.1 0.0 1 1 4.8e-06 0.00012 13.2 0.0 1 35 7 42 7 77 0.71 RNA helicase MobA_MobL PF03389.15 222 CP018901_00010 - 183 4.6e-53 170.8 0.0 1 1 2.2e-54 5.3e-53 170.6 0.0 1 133 17 154 17 178 0.95 MobA/MobL family RNA_helicase PF00910.22 107 CP018901_00011 - 623 0.00017 12.7 0.0 1 2 0.16 3.7 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 CP018901_00011 - 623 0.00017 12.7 0.0 2 2 4.1e-05 0.00098 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase HTH_24 PF13412.6 48 CP018901_00134 - 44 9.4e-07 19.1 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 CP020480_00022 - 329 1.6e-05 16.0 0.0 1 2 0.43 10 -2.7 0.0 14 43 13 42 11 45 0.69 RNA helicase RNA_helicase PF00910.22 107 CP020480_00022 - 329 1.6e-05 16.0 0.0 2 2 2.4e-06 5.7e-05 14.2 0.0 1 21 163 183 163 223 0.85 RNA helicase RNA_helicase PF00910.22 107 CP020775_00040 - 335 6e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 CP022078_00021 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CP022078_00021 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 CP022471_00039 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 CP022471_00039 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 CP023544_00040 - 339 6.1e-05 14.1 0.0 1 1 6e-06 0.00015 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 CP023544_00059 - 181 0.00012 13.2 0.0 1 1 8.7e-06 0.00021 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase RNA_helicase PF00910.22 107 CP023546_00033 - 181 0.00012 13.2 0.0 1 1 8.7e-06 0.00021 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase RNA_helicase PF00910.22 107 CP023546_00051 - 339 6.1e-05 14.1 0.0 1 1 6e-06 0.00015 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 KX686749_00010 - 314 1e-05 15.7 0.0 1 2 5.9e-06 0.00014 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 KX686749_00010 - 314 1e-05 15.7 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 KX686749_00037 - 335 6e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 KX686749_00051 - 137 2.6e-05 15.3 0.0 1 1 1.8e-06 4.2e-05 14.6 0.0 1 36 7 43 7 74 0.67 RNA helicase RNA_helicase PF00910.22 107 MLDY01000008_00016 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 MLDY01000008_00016 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 MLDZ01000009_00012 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 MLDZ01000009_00012 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 MLDZ01000009_00039 - 314 3.2e-06 17.4 0.1 1 2 8.2e-07 2e-05 14.9 0.1 17 35 10 28 9 29 0.93 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 MLDZ01000009_00039 - 314 3.2e-06 17.4 0.1 2 2 0.055 1.3 -0.6 0.0 26 38 98 110 95 112 0.85 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 MUJW01000047_00040 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 MUJW01000047_00040 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 NC_006134_00041 - 335 6.2e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 NC_006135_00043 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 NC_006135_00043 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 NC_007141_00031 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 NC_007141_00031 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 NC_008790_00039 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 NC_008790_00039 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 NC_022355_00045 - 339 6.1e-05 14.1 0.0 1 1 6e-06 0.00015 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 NC_022355_00063 - 181 0.00012 13.2 0.0 1 1 8.7e-06 0.00021 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase RNA_helicase PF00910.22 107 pAAFJ01000010_00093 - 329 1.6e-05 16.0 0.0 1 2 0.43 10 -2.7 0.0 14 43 13 42 11 45 0.69 RNA helicase RNA_helicase PF00910.22 107 pAAFJ01000010_00093 - 329 1.6e-05 16.0 0.0 2 2 2.4e-06 5.7e-05 14.2 0.0 1 21 163 183 163 223 0.85 RNA helicase RNA_helicase PF00910.22 107 pAAFL01000016_00026 - 623 0.00017 12.7 0.0 1 2 0.16 3.7 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 pAAFL01000016_00026 - 623 0.00017 12.7 0.0 2 2 4.1e-05 0.00098 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase MobA_MobL PF03389.15 222 pAAFL01000016_00027 - 498 5e-82 265.5 0.0 1 2 8.1e-83 1.9e-81 263.6 0.0 1 222 17 246 17 246 0.99 MobA/MobL family MobA_MobL PF03389.15 222 pAAFL01000016_00027 - 498 5e-82 265.5 0.0 2 2 0.095 2.3 -1.5 0.1 7 188 309 339 297 367 0.59 MobA/MobL family RNA_helicase PF00910.22 107 pAAFL01000021_00004 - 181 7.3e-05 13.9 0.0 1 1 5.3e-06 0.00013 13.1 0.0 1 35 7 42 7 77 0.71 RNA helicase HTH_24 PF13412.6 48 pAAFL01000021_00009 - 44 9.4e-07 19.1 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pAANQ01000006_00029 - 335 6.2e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pAJ489618_00004 - 67 0.00013 12.3 0.3 1 1 7.9e-06 0.00019 11.7 0.3 7 30 9 32 1 32 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pAVFM02000074_00004 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pAVFM02000074_00004 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pAY190287_00001 - 332 4.9e-05 14.4 0.0 1 2 0.37 8.8 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pAY190287_00001 - 332 4.9e-05 14.4 0.0 2 2 5.9e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pAY394560_00041 - 335 6.2e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pAY394561_00043 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pAY394561_00043 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pAY701528_00008 - 181 0.00011 13.3 0.0 1 1 8.7e-06 0.00021 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase RNA_helicase PF00910.22 107 pAY701528_00016 - 252 2.3e-08 25.1 0.4 1 2 0.01 0.24 2.6 0.1 41 97 24 80 4 83 0.71 RNA helicase RNA_helicase PF00910.22 107 pAY701528_00016 - 252 2.3e-08 25.1 0.4 2 2 2.6e-08 6.3e-07 20.5 0.0 1 74 103 187 103 206 0.86 RNA helicase RNA_helicase PF00910.22 107 pAY701528_00019 - 181 9e-05 13.6 0.0 1 1 6.7e-06 0.00016 12.8 0.0 1 35 7 42 7 77 0.71 RNA helicase RNA_helicase PF00910.22 107 pAY714214_00031 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pAY714214_00031 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pCM007863_00016 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCM007863_00016 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pCM007865_00012 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCM007865_00012 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pCM007865_00039 - 314 3.2e-06 17.4 0.1 1 2 8.2e-07 2e-05 14.9 0.1 17 35 10 28 9 29 0.93 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCM007865_00039 - 314 3.2e-06 17.4 0.1 2 2 0.055 1.3 -0.6 0.0 26 38 98 110 95 112 0.85 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pCP000549_00039 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP000549_00039 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pCP004067_00045 - 339 6.1e-05 14.1 0.0 1 1 6e-06 0.00015 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pCP004067_00063 - 181 0.00012 13.2 0.0 1 1 8.7e-06 0.00021 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase HTH_24 PF13412.6 48 pCP007180_00014 - 314 9.8e-06 15.8 0.0 1 2 5.5e-06 0.00013 12.2 0.0 17 34 10 27 10 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP007180_00014 - 314 9.8e-06 15.8 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pCP007180_00044 - 335 6.2e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pCP007182_00037 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP007182_00037 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pCP007750_00017 - 314 9.8e-06 15.8 0.0 1 2 5.5e-06 0.00013 12.2 0.0 17 34 10 27 10 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP007750_00017 - 314 9.8e-06 15.8 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pCP007750_00040 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP007750_00040 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pCP007752_00047 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP007752_00047 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pCP010073_00032 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP010073_00032 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pCP010073_00054 - 314 1e-05 15.8 0.0 1 2 5.9e-06 0.00014 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP010073_00054 - 314 1e-05 15.8 0.0 2 2 0.021 0.5 0.8 0.0 26 39 98 111 94 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pCP010302_00032 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP010302_00032 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pCP010302_00054 - 314 1e-05 15.8 0.0 1 2 5.9e-06 0.00014 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP010302_00054 - 314 1e-05 15.8 0.0 2 2 0.021 0.5 0.8 0.0 26 39 98 111 94 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pCP011017_00010 - 335 6.2e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pCP013033_00009 - 314 6.2e-06 16.5 0.0 1 2 3.5e-06 8.3e-05 12.9 0.1 17 34 10 27 9 27 0.94 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP013033_00009 - 314 6.2e-06 16.5 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pCP013033_00039 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP013033_00039 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pCP013035_00039 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP013035_00039 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pCP013037_00030 - 314 6.2e-06 16.5 0.0 1 2 3.5e-06 8.3e-05 12.9 0.1 17 34 10 27 9 27 0.94 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP013037_00030 - 314 6.2e-06 16.5 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pCP013037_00047 - 330 5.1e-05 14.4 0.0 1 2 0.43 10 -2.7 0.0 43 71 110 139 94 149 0.63 RNA helicase RNA_helicase PF00910.22 107 pCP013037_00047 - 330 5.1e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pCP013117_00059 - 63 1.9e-05 14.9 0.0 1 1 1.2e-06 2.9e-05 14.3 0.0 18 37 1 20 1 28 0.89 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pCP013117_00060 - 285 0.00014 13.0 0.2 1 2 0.4 9.6 -2.6 0.1 56 75 53 74 50 92 0.60 RNA helicase RNA_helicase PF00910.22 107 pCP013117_00060 - 285 0.00014 13.0 0.2 2 2 2.2e-05 0.00053 11.1 0.0 2 26 96 120 95 174 0.86 RNA helicase HTH_24 PF13412.6 48 pCP013117_00064 - 267 0.0002 11.7 0.9 1 2 3.7e-05 0.00088 9.6 0.1 10 34 8 32 7 35 0.86 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP013117_00064 - 267 0.0002 11.7 0.9 2 2 0.058 1.4 -0.7 0.1 27 36 103 112 103 115 0.85 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pCP013117_00094 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP013117_00094 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pCP013735_00025 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP013735_00025 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pCP014345_00055 - 44 9.9e-07 19.0 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pCP014743_00056 - 332 4.9e-05 14.4 0.0 1 2 0.37 8.8 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP014743_00056 - 332 4.9e-05 14.4 0.0 2 2 5.9e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pCP014743_00083 - 314 1e-05 15.7 0.0 1 2 5.9e-06 0.00014 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP014743_00083 - 314 1e-05 15.7 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP014743_00111 - 44 9.9e-07 19.0 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pCP014745_00051 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP014745_00051 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pCP014745_00078 - 314 1e-05 15.7 0.0 1 2 5.9e-06 0.00014 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP014745_00078 - 314 1e-05 15.7 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP014745_00106 - 44 9.9e-07 19.0 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pCP017026_00004 - 181 6.8e-05 14.0 0.0 1 1 5.3e-06 0.00013 13.1 0.0 1 35 7 42 7 77 0.71 RNA helicase MobA_MobL PF03389.15 222 pCP017026_00010 - 498 5e-82 265.5 0.0 1 2 8.1e-83 1.9e-81 263.6 0.0 1 222 17 246 17 246 0.99 MobA/MobL family MobA_MobL PF03389.15 222 pCP017026_00010 - 498 5e-82 265.5 0.0 2 2 0.095 2.3 -1.5 0.1 7 188 309 339 297 367 0.59 MobA/MobL family RNA_helicase PF00910.22 107 pCP017026_00011 - 623 0.00017 12.7 0.0 1 2 0.16 3.7 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 pCP017026_00011 - 623 0.00017 12.7 0.0 2 2 4.1e-05 0.00098 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase RNA_helicase PF00910.22 107 pCP017026_00112 - 335 6e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RepL PF05732.11 165 pCP017026_00128 - 107 6.9e-20 61.8 0.0 1 1 3.3e-21 8e-20 61.6 0.0 40 135 2 100 1 105 0.89 Firmicute plasmid replication protein (RepL) HTH_24 PF13412.6 48 pCP017026_00195 - 44 9.4e-07 19.1 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pCP017230_00045 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP017230_00045 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pCP017417_00028 - 44 9.9e-07 19.0 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP017418_00004 - 314 1e-05 15.7 0.0 1 2 5.9e-06 0.00014 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP017418_00004 - 314 1e-05 15.7 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pCP017418_00031 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP017418_00031 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pCP017854_00025 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP017854_00025 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pCP017857_00040 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP017857_00040 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pCP018901_00004 - 172 6.3e-05 14.1 0.0 1 1 4.8e-06 0.00012 13.2 0.0 1 35 7 42 7 77 0.71 RNA helicase MobA_MobL PF03389.15 222 pCP018901_00010 - 183 4.6e-53 170.8 0.0 1 1 2.2e-54 5.3e-53 170.6 0.0 1 133 17 154 17 178 0.95 MobA/MobL family RNA_helicase PF00910.22 107 pCP018901_00011 - 623 0.00017 12.7 0.0 1 2 0.16 3.7 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 pCP018901_00011 - 623 0.00017 12.7 0.0 2 2 4.1e-05 0.00098 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase HTH_24 PF13412.6 48 pCP018901_00134 - 44 9.4e-07 19.1 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pCP020480_00022 - 329 1.6e-05 16.0 0.0 1 2 0.43 10 -2.7 0.0 14 43 13 42 11 45 0.69 RNA helicase RNA_helicase PF00910.22 107 pCP020480_00022 - 329 1.6e-05 16.0 0.0 2 2 2.4e-06 5.7e-05 14.2 0.0 1 21 163 183 163 223 0.85 RNA helicase RNA_helicase PF00910.22 107 pCP020775_00040 - 335 6e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pCP022078_00021 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP022078_00021 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pCP022471_00039 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pCP022471_00039 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pCP023544_00040 - 339 6.1e-05 14.1 0.0 1 1 6e-06 0.00015 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pCP023544_00059 - 181 0.00012 13.2 0.0 1 1 8.7e-06 0.00021 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase RNA_helicase PF00910.22 107 pCP023546_00033 - 181 0.00012 13.2 0.0 1 1 8.7e-06 0.00021 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase RNA_helicase PF00910.22 107 pCP023546_00051 - 339 6.1e-05 14.1 0.0 1 1 6e-06 0.00015 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pGCA_000015525_00039 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pGCA_000015525_00039 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RHH_1 PF01402.21 39 pGCA_000015525_00057 - 135 0.00011 12.9 0.4 1 1 1.3e-05 0.00032 11.4 0.3 4 34 6 36 3 43 0.85 Ribbon-helix-helix protein, copG family RNA_helicase PF00910.22 107 pGCA_000015525_00077 - 222 0.00011 13.3 0.1 1 2 0.00024 0.0059 7.7 0.0 6 30 9 31 4 90 0.74 RNA helicase RNA_helicase PF00910.22 107 pGCA_000015525_00077 - 222 0.00011 13.3 0.1 2 2 0.006 0.14 3.3 0.0 62 84 133 156 116 168 0.75 RNA helicase Rep_3 PF01051.21 222 pGCA_000015525_00079 - 278 1.8e-29 93.8 17.6 1 1 9.3e-31 2.2e-29 93.5 17.6 3 222 8 237 7 237 0.86 Initiator Replication protein MobA_MobL PF03389.15 222 pGCA_000015525_00100 - 523 2.1e-05 15.0 8.8 1 1 3.2e-06 7.7e-05 13.1 8.8 62 194 109 279 103 354 0.70 MobA/MobL family RNA_helicase PF00910.22 107 pGCA_000465235_00045 - 339 6.1e-05 14.1 0.0 1 1 6e-06 0.00015 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pGCA_000465235_00063 - 181 0.00012 13.2 0.0 1 1 8.7e-06 0.00021 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase Rep_3 PF01051.21 222 pGCA_000465235_00071 - 374 1.9e-44 142.7 17.1 1 2 8e-46 1.9e-44 142.7 17.1 8 222 30 238 23 238 0.91 Initiator Replication protein Rep_3 PF01051.21 222 pGCA_000465235_00071 - 374 1.9e-44 142.7 17.1 2 2 0.18 4.4 -2.3 0.0 81 99 335 353 298 362 0.64 Initiator Replication protein RNA_helicase PF00910.22 107 pGCA_000583775_00037 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pGCA_000583775_00037 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pGCA_000583795_00014 - 314 9.8e-06 15.8 0.0 1 2 5.5e-06 0.00013 12.2 0.0 17 34 10 27 10 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pGCA_000583795_00014 - 314 9.8e-06 15.8 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pGCA_000583795_00044 - 335 6.2e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pGCA_001417635_00039 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pGCA_001417635_00039 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pGCA_001563565_00055 - 44 9.9e-07 19.0 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pGCA_001587035_00056 - 332 4.9e-05 14.4 0.0 1 2 0.37 8.8 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pGCA_001587035_00056 - 332 4.9e-05 14.4 0.0 2 2 5.9e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pGCA_001587035_00083 - 314 1e-05 15.7 0.0 1 2 5.9e-06 0.00014 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pGCA_001587035_00083 - 314 1e-05 15.7 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pGCA_001587035_00111 - 44 9.9e-07 19.0 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pGCA_001717605_00003 - 181 6.8e-05 14.0 0.0 1 1 5.3e-06 0.00013 13.1 0.0 1 35 7 42 7 77 0.71 RNA helicase MobA_MobL PF03389.15 222 pGCA_001717605_00009 - 498 5e-82 265.5 0.0 1 2 8.1e-83 1.9e-81 263.6 0.0 1 222 17 246 17 246 0.99 MobA/MobL family MobA_MobL PF03389.15 222 pGCA_001717605_00009 - 498 5e-82 265.5 0.0 2 2 0.095 2.3 -1.5 0.1 7 188 309 339 297 367 0.59 MobA/MobL family RNA_helicase PF00910.22 107 pGCA_001717605_00010 - 623 0.00017 12.7 0.0 1 2 0.16 3.7 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 pGCA_001717605_00010 - 623 0.00017 12.7 0.0 2 2 4.1e-05 0.00098 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase RNA_helicase PF00910.22 107 pGCA_001717605_00111 - 335 6e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RepL PF05732.11 165 pGCA_001717605_00127 - 107 6.9e-20 61.8 0.0 1 1 3.3e-21 8e-20 61.6 0.0 40 135 2 100 1 105 0.89 Firmicute plasmid replication protein (RepL) HTH_24 PF13412.6 48 pGCA_001717605_00195 - 44 9.4e-07 19.1 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding Rep_3 PF01051.21 222 pGCA_001717605_00199 - 358 5e-41 131.5 16.1 1 2 2.1e-42 5e-41 131.5 16.1 2 222 14 241 13 241 0.89 Initiator Replication protein Rep_3 PF01051.21 222 pGCA_001717605_00199 - 358 5e-41 131.5 16.1 2 2 0.075 1.8 -1.1 0.4 51 56 306 314 254 355 0.45 Initiator Replication protein Rep_3 PF01051.21 222 pGCA_001717605_00202 - 342 1.2e-44 143.4 10.2 1 1 8.7e-46 2.1e-44 142.6 10.2 2 222 2 244 1 244 0.88 Initiator Replication protein HTH_24 PF13412.6 48 pGCA_001865595_00017 - 314 9.8e-06 15.8 0.0 1 2 5.5e-06 0.00013 12.2 0.0 17 34 10 27 10 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pGCA_001865595_00017 - 314 9.8e-06 15.8 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pGCA_001865595_00040 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pGCA_001865595_00040 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pGCA_001865615_00047 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pGCA_001865615_00047 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pGCA_001936355_00004 - 172 6.3e-05 14.1 0.0 1 1 4.8e-06 0.00012 13.2 0.0 1 35 7 42 7 77 0.71 RNA helicase MobA_MobL PF03389.15 222 pGCA_001936355_00010 - 183 4.6e-53 170.8 0.0 1 1 2.2e-54 5.3e-53 170.6 0.0 1 133 17 154 17 178 0.95 MobA/MobL family RNA_helicase PF00910.22 107 pGCA_001936355_00011 - 623 0.00017 12.7 0.0 1 2 0.16 3.7 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 pGCA_001936355_00011 - 623 0.00017 12.7 0.0 2 2 4.1e-05 0.00098 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase HTH_24 PF13412.6 48 pGCA_001936355_00134 - 44 9.4e-07 19.1 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pGCA_002101355_00040 - 335 6e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pGCA_002209045_00021 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pGCA_002209045_00021 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pGCA_002214785_00045 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pGCA_002214785_00045 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pGCA_002214785_00088 - 312 5.9e-05 14.2 0.0 1 2 0.051 1.2 0.3 0.0 36 73 33 68 8 82 0.73 RNA helicase RNA_helicase PF00910.22 107 pGCA_002214785_00088 - 312 5.9e-05 14.2 0.0 2 2 2.7e-05 0.00065 10.8 0.0 1 24 146 169 146 198 0.82 RNA helicase RNA_helicase PF00910.22 107 pGCA_002234455_00039 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pGCA_002234455_00039 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pGCA_002407125_00040 - 339 6.1e-05 14.1 0.0 1 1 6e-06 0.00015 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pGCA_002407125_00059 - 181 0.00012 13.2 0.0 1 1 8.7e-06 0.00021 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase RNA_helicase PF00910.22 107 pGCA_002407145_00033 - 181 0.00012 13.2 0.0 1 1 8.7e-06 0.00021 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase RNA_helicase PF00910.22 107 pGCA_002407145_00051 - 339 6.1e-05 14.1 0.0 1 1 6e-06 0.00015 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pGCA_002407145_00076 - 312 5.5e-05 14.3 0.0 1 2 0.053 1.3 0.2 0.0 36 72 33 67 8 81 0.73 RNA helicase RNA_helicase PF00910.22 107 pGCA_002407145_00076 - 312 5.5e-05 14.3 0.0 2 2 2.4e-05 0.00058 11.0 0.0 1 24 146 169 146 197 0.82 RNA helicase HTH_24 PF13412.6 48 pKX686749_00010 - 314 1e-05 15.7 0.0 1 2 5.9e-06 0.00014 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pKX686749_00010 - 314 1e-05 15.7 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pKX686749_00037 - 335 6e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pKX686749_00051 - 137 2.6e-05 15.3 0.0 1 1 1.8e-06 4.2e-05 14.6 0.0 1 36 7 43 7 74 0.67 RNA helicase RNA_helicase PF00910.22 107 pMLDY01000008_00016 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pMLDY01000008_00016 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pMLDZ01000009_00012 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pMLDZ01000009_00012 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pMLDZ01000009_00039 - 314 3.2e-06 17.4 0.1 1 2 8.2e-07 2e-05 14.9 0.1 17 35 10 28 9 29 0.93 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pMLDZ01000009_00039 - 314 3.2e-06 17.4 0.1 2 2 0.055 1.3 -0.6 0.0 26 38 98 110 95 112 0.85 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pMUJW01000047_00040 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pMUJW01000047_00040 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNC_006134_00041 - 335 6.2e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNC_006135_00043 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNC_006135_00043 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNC_007141_00031 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNC_007141_00031 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNC_008790_00039 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNC_008790_00039 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNC_022355_00045 - 339 6.1e-05 14.1 0.0 1 1 6e-06 0.00015 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNC_022355_00063 - 181 0.00012 13.2 0.0 1 1 8.7e-06 0.00021 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase RNA_helicase PF00910.22 107 pNZ_AAFJ01000010_00093 - 329 1.6e-05 16.0 0.0 1 2 0.43 10 -2.7 0.0 14 43 13 42 11 45 0.69 RNA helicase RNA_helicase PF00910.22 107 pNZ_AAFJ01000010_00093 - 329 1.6e-05 16.0 0.0 2 2 2.4e-06 5.7e-05 14.2 0.0 1 21 163 183 163 223 0.85 RNA helicase RNA_helicase PF00910.22 107 pNZ_AAFL01000016_00026 - 623 0.00017 12.7 0.0 1 2 0.16 3.7 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 pNZ_AAFL01000016_00026 - 623 0.00017 12.7 0.0 2 2 4.1e-05 0.00098 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase MobA_MobL PF03389.15 222 pNZ_AAFL01000016_00027 - 498 5e-82 265.5 0.0 1 2 8.1e-83 1.9e-81 263.6 0.0 1 222 17 246 17 246 0.99 MobA/MobL family MobA_MobL PF03389.15 222 pNZ_AAFL01000016_00027 - 498 5e-82 265.5 0.0 2 2 0.095 2.3 -1.5 0.1 7 188 309 339 297 367 0.59 MobA/MobL family RNA_helicase PF00910.22 107 pNZ_AAFL01000021_00004 - 181 7.3e-05 13.9 0.0 1 1 5.3e-06 0.00013 13.1 0.0 1 35 7 42 7 77 0.71 RNA helicase HTH_24 PF13412.6 48 pNZ_AAFL01000021_00009 - 44 9.4e-07 19.1 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pNZ_AANQ01000006_00029 - 335 6.2e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNZ_CM007863_00016 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_CM007863_00016 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNZ_CM007865_00012 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_CM007865_00012 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pNZ_CM007865_00039 - 314 3.2e-06 17.4 0.1 1 2 8.2e-07 2e-05 14.9 0.1 17 35 10 28 9 29 0.93 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pNZ_CM007865_00039 - 314 3.2e-06 17.4 0.1 2 2 0.055 1.3 -0.6 0.0 26 38 98 110 95 112 0.85 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pNZ_CP007180_00014 - 314 9.8e-06 15.8 0.0 1 2 5.5e-06 0.00013 12.2 0.0 17 34 10 27 10 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pNZ_CP007180_00014 - 314 9.8e-06 15.8 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pNZ_CP007180_00044 - 335 6.2e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pNZ_CP007750_00017 - 314 9.8e-06 15.8 0.0 1 2 5.5e-06 0.00013 12.2 0.0 17 34 10 27 10 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pNZ_CP007750_00017 - 314 9.8e-06 15.8 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pNZ_CP007750_00040 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP007750_00040 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP007752_00047 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP007752_00047 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP010073_00032 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP010073_00032 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pNZ_CP010073_00054 - 314 1e-05 15.8 0.0 1 2 5.9e-06 0.00014 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pNZ_CP010073_00054 - 314 1e-05 15.8 0.0 2 2 0.021 0.5 0.8 0.0 26 39 98 111 94 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pNZ_CP010302_00032 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP010302_00032 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pNZ_CP010302_00054 - 314 1e-05 15.8 0.0 1 2 5.9e-06 0.00014 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pNZ_CP010302_00054 - 314 1e-05 15.8 0.0 2 2 0.021 0.5 0.8 0.0 26 39 98 111 94 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pNZ_CP011017_00010 - 335 6.2e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pNZ_CP013033_00009 - 314 6.2e-06 16.5 0.0 1 2 3.5e-06 8.3e-05 12.9 0.1 17 34 10 27 9 27 0.94 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pNZ_CP013033_00009 - 314 6.2e-06 16.5 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pNZ_CP013033_00039 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP013033_00039 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP013035_00039 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP013035_00039 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pNZ_CP013037_00030 - 314 6.2e-06 16.5 0.0 1 2 3.5e-06 8.3e-05 12.9 0.1 17 34 10 27 9 27 0.94 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pNZ_CP013037_00030 - 314 6.2e-06 16.5 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pNZ_CP013037_00047 - 330 5.1e-05 14.4 0.0 1 2 0.43 10 -2.7 0.0 43 71 110 139 94 149 0.63 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP013037_00047 - 330 5.1e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pNZ_CP013117_00059 - 63 1.9e-05 14.9 0.0 1 1 1.2e-06 2.9e-05 14.3 0.0 18 37 1 20 1 28 0.89 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pNZ_CP013117_00060 - 285 0.00014 13.0 0.2 1 2 0.4 9.6 -2.6 0.1 56 75 53 74 50 92 0.60 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP013117_00060 - 285 0.00014 13.0 0.2 2 2 2.2e-05 0.00053 11.1 0.0 2 26 96 120 95 174 0.86 RNA helicase HTH_24 PF13412.6 48 pNZ_CP013117_00064 - 267 0.0002 11.7 0.9 1 2 3.7e-05 0.00088 9.6 0.1 10 34 8 32 7 35 0.86 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pNZ_CP013117_00064 - 267 0.0002 11.7 0.9 2 2 0.058 1.4 -0.7 0.1 27 36 103 112 103 115 0.85 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pNZ_CP013117_00094 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP013117_00094 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP013735_00025 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP013735_00025 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pNZ_CP014345_00055 - 44 9.9e-07 19.0 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pNZ_CP014743_00056 - 332 4.9e-05 14.4 0.0 1 2 0.37 8.8 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP014743_00056 - 332 4.9e-05 14.4 0.0 2 2 5.9e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pNZ_CP014743_00083 - 314 1e-05 15.7 0.0 1 2 5.9e-06 0.00014 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pNZ_CP014743_00083 - 314 1e-05 15.7 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pNZ_CP014743_00111 - 44 9.9e-07 19.0 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pNZ_CP014745_00051 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP014745_00051 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase HTH_24 PF13412.6 48 pNZ_CP014745_00078 - 314 1e-05 15.7 0.0 1 2 5.9e-06 0.00014 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pNZ_CP014745_00078 - 314 1e-05 15.7 0.0 2 2 0.021 0.51 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pNZ_CP014745_00106 - 44 9.9e-07 19.0 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pNZ_CP017026_00004 - 181 6.8e-05 14.0 0.0 1 1 5.3e-06 0.00013 13.1 0.0 1 35 7 42 7 77 0.71 RNA helicase MobA_MobL PF03389.15 222 pNZ_CP017026_00010 - 498 5e-82 265.5 0.0 1 2 8.1e-83 1.9e-81 263.6 0.0 1 222 17 246 17 246 0.99 MobA/MobL family MobA_MobL PF03389.15 222 pNZ_CP017026_00010 - 498 5e-82 265.5 0.0 2 2 0.095 2.3 -1.5 0.1 7 188 309 339 297 367 0.59 MobA/MobL family RNA_helicase PF00910.22 107 pNZ_CP017026_00011 - 623 0.00017 12.7 0.0 1 2 0.16 3.7 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP017026_00011 - 623 0.00017 12.7 0.0 2 2 4.1e-05 0.00098 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP017026_00112 - 335 6e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RepL PF05732.11 165 pNZ_CP017026_00128 - 107 6.9e-20 61.8 0.0 1 1 3.3e-21 8e-20 61.6 0.0 40 135 2 100 1 105 0.89 Firmicute plasmid replication protein (RepL) HTH_24 PF13412.6 48 pNZ_CP017026_00195 - 44 9.4e-07 19.1 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pNZ_CP017230_00045 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP017230_00045 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP017854_00025 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP017854_00025 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP017857_00040 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP017857_00040 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP018901_00004 - 172 6.3e-05 14.1 0.0 1 1 4.8e-06 0.00012 13.2 0.0 1 35 7 42 7 77 0.71 RNA helicase MobA_MobL PF03389.15 222 pNZ_CP018901_00010 - 183 4.6e-53 170.8 0.0 1 1 2.2e-54 5.3e-53 170.6 0.0 1 133 17 154 17 178 0.95 MobA/MobL family RNA_helicase PF00910.22 107 pNZ_CP018901_00011 - 623 0.00017 12.7 0.0 1 2 0.16 3.7 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP018901_00011 - 623 0.00017 12.7 0.0 2 2 4.1e-05 0.00098 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase HTH_24 PF13412.6 48 pNZ_CP018901_00134 - 44 9.4e-07 19.1 0.2 1 1 5.2e-08 1.2e-06 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding RNA_helicase PF00910.22 107 pNZ_CP020480_00022 - 329 1.6e-05 16.0 0.0 1 2 0.43 10 -2.7 0.0 14 43 13 42 11 45 0.69 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP020480_00022 - 329 1.6e-05 16.0 0.0 2 2 2.4e-06 5.7e-05 14.2 0.0 1 21 163 183 163 223 0.85 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP020775_00040 - 335 6e-05 14.1 0.0 1 1 5.9e-06 0.00014 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP022078_00021 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP022078_00021 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP022471_00039 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP022471_00039 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP023544_00040 - 339 6.1e-05 14.1 0.0 1 1 6e-06 0.00015 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP023544_00059 - 181 0.00012 13.2 0.0 1 1 8.7e-06 0.00021 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP023546_00033 - 181 0.00012 13.2 0.0 1 1 8.7e-06 0.00021 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase RNA_helicase PF00910.22 107 pNZ_CP023546_00051 - 339 6.1e-05 14.1 0.0 1 1 6e-06 0.00015 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase RNA_helicase PF00910.22 107 pNZ_MUJW01000047_00040 - 330 4.8e-05 14.4 0.0 1 2 0.36 8.7 -2.5 0.0 37 71 104 139 93 149 0.64 RNA helicase RNA_helicase PF00910.22 107 pNZ_MUJW01000047_00040 - 330 4.8e-05 14.4 0.0 2 2 5.8e-06 0.00014 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase # # Program: hmmscan # Version: 3.1b2 (February 2015) # Pipeline mode: SCAN # Query file: total.faa # Target file: /home/depict/plasmidtyping/plasmid_replicons.hmm # Option settings: hmmscan --tblout total_table.txt --domtblout total_domtbl.txt --acc --cpu 16 /home/depict/plasmidtyping/plasmid_replicons.hmm total.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/Campylobacter/plasmids/nohit/faa # Date: Fri Nov 13 20:03:00 2020 # [ok]