# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Reticulon PF02453.17 157 AAFJ01000010_00004 - 71 0.011 15.7 3.4 1 1 6.2e-07 0.011 15.7 3.4 101 143 3 45 1 63 0.95 Reticulon TK PF00265.18 177 AAFJ01000010_00005 - 167 7e-20 71.6 1.2 1 1 2.7e-23 1.6e-19 70.5 1.2 3 177 2 162 1 162 0.81 Thymidine kinase AAA_14 PF13173.6 131 AAFJ01000010_00005 - 167 0.003 17.6 0.3 1 1 6.7e-07 0.004 17.2 0.3 5 99 3 103 1 117 0.58 AAA domain Terminase_6 PF03237.15 215 AAFJ01000010_00005 - 167 0.0088 15.7 0.4 1 1 5.1e-06 0.03 14.0 0.4 2 57 5 64 4 120 0.78 Terminase-like family FcoT PF10862.8 156 AAFJ01000010_00006 - 86 0.031 13.9 0.1 1 1 5.7e-06 0.034 13.7 0.1 69 125 26 83 13 86 0.83 FcoT-like thioesterase domain ECH_2 PF16113.5 334 AAFJ01000010_00006 - 86 0.044 13.3 0.5 1 1 7.5e-06 0.045 13.3 0.5 166 240 5 80 1 86 0.77 Enoyl-CoA hydratase/isomerase EF-hand_7 PF13499.6 71 AAFJ01000010_00006 - 86 0.068 13.6 0.2 1 1 0.00044 2.6 8.5 0.2 42 70 28 75 6 76 0.55 EF-hand domain pair DUF3973 PF13119.6 40 AAFJ01000010_00007 - 73 0.088 12.9 2.7 1 2 0.018 3.2e+02 1.5 0.0 12 23 15 26 11 38 0.70 Domain of unknown function (DUF3973) DUF3973 PF13119.6 40 AAFJ01000010_00007 - 73 0.088 12.9 2.7 2 2 1.9e-05 0.35 11.0 1.3 1 28 41 66 41 73 0.86 Domain of unknown function (DUF3973) Toprim_2 PF13155.6 90 AAFJ01000010_00010 - 341 2.2e-11 44.0 0.0 1 1 9.5e-15 4.3e-11 43.1 0.0 1 90 238 328 238 328 0.90 Toprim-like Toprim_3 PF13362.6 95 AAFJ01000010_00010 - 341 4.2e-05 23.8 0.0 1 1 1.9e-08 8.4e-05 22.9 0.0 2 90 237 329 236 332 0.76 Toprim domain zf-CHC2 PF01807.20 98 AAFJ01000010_00010 - 341 0.0061 16.4 0.1 1 2 8.3e-06 0.037 13.8 0.1 48 92 3 46 1 51 0.84 CHC2 zinc finger zf-CHC2 PF01807.20 98 AAFJ01000010_00010 - 341 0.0061 16.4 0.1 2 2 0.37 1.6e+03 -1.1 0.0 47 64 276 293 271 300 0.80 CHC2 zinc finger DUF3854 PF12965.7 130 AAFJ01000010_00010 - 341 0.094 12.7 0.0 1 1 6.4e-05 0.29 11.1 0.0 68 126 279 331 267 334 0.85 Domain of unknown function (DUF3854) CSN8_PSD8_EIF3K PF10075.9 144 AAFJ01000010_00011 - 135 0.31 11.0 4.2 1 2 0.018 3.3e+02 1.2 0.2 54 81 8 35 2 47 0.56 CSN8/PSMD8/EIF3K family CSN8_PSD8_EIF3K PF10075.9 144 AAFJ01000010_00011 - 135 0.31 11.0 4.2 2 2 1.6e-05 0.29 11.1 0.8 41 102 73 127 35 130 0.86 CSN8/PSMD8/EIF3K family Peptidase_C39 PF03412.15 133 AAFJ01000010_00015 - 197 2.5e-17 62.9 0.0 1 1 3.7e-21 3.3e-17 62.5 0.0 2 124 33 162 32 176 0.81 Peptidase C39 family Peptidase_C70 PF12385.8 145 AAFJ01000010_00015 - 197 3e-05 24.0 0.0 1 1 4.7e-09 4.2e-05 23.6 0.0 11 131 37 147 20 158 0.79 Papain-like cysteine protease AvrRpt2 Phage_integrase PF00589.22 172 AAFJ01000010_00017 - 314 2.8e-20 72.8 2.1 1 1 1.5e-23 4.4e-20 72.2 2.1 2 170 131 302 130 304 0.85 Phage integrase family Phage_int_SAM_1 PF02899.17 84 AAFJ01000010_00017 - 314 5.5e-05 23.4 2.7 1 3 2.7e-05 0.081 13.2 0.1 3 60 18 75 16 79 0.87 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 AAFJ01000010_00017 - 314 5.5e-05 23.4 2.7 2 3 0.00047 1.4 9.3 0.0 10 37 78 104 76 110 0.88 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 AAFJ01000010_00017 - 314 5.5e-05 23.4 2.7 3 3 2.4 7.2e+03 -2.6 0.1 37 59 125 147 118 153 0.61 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 AAFJ01000010_00017 - 314 0.00022 21.5 8.0 1 2 7.5e-08 0.00022 21.5 8.0 7 80 17 98 11 105 0.84 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 AAFJ01000010_00017 - 314 0.00022 21.5 8.0 2 2 0.47 1.4e+03 -0.3 0.3 4 17 218 231 210 293 0.72 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 85 AAFJ01000010_00017 - 314 0.0026 18.2 5.5 1 2 8.6e-07 0.0026 18.2 5.5 2 79 16 102 15 108 0.89 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 AAFJ01000010_00017 - 314 0.0026 18.2 5.5 2 2 2.1 6.4e+03 -2.3 0.1 20 44 188 211 172 233 0.57 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.7 149 AAFJ01000010_00017 - 314 0.0035 17.5 0.4 1 1 2.3e-06 0.0067 16.5 0.4 30 148 156 271 120 272 0.76 Integrase Phage_int_SAM_6 PF18644.1 132 AAFJ01000010_00017 - 314 3.7 7.6 16.4 1 4 0.00026 0.77 9.8 0.9 3 46 5 49 3 63 0.75 Phage integrase SAM-like domain Phage_int_SAM_6 PF18644.1 132 AAFJ01000010_00017 - 314 3.7 7.6 16.4 2 4 0.00083 2.5 8.1 2.6 88 132 54 105 33 105 0.66 Phage integrase SAM-like domain Phage_int_SAM_6 PF18644.1 132 AAFJ01000010_00017 - 314 3.7 7.6 16.4 3 4 1.5 4.5e+03 -2.4 0.0 37 46 138 147 113 196 0.62 Phage integrase SAM-like domain Phage_int_SAM_6 PF18644.1 132 AAFJ01000010_00017 - 314 3.7 7.6 16.4 4 4 1.2 3.5e+03 -2.1 0.3 29 72 255 299 246 308 0.60 Phage integrase SAM-like domain HMG-CoA_red PF00368.18 367 AAFJ01000010_00018 - 74 0.083 11.9 0.0 1 1 5.8e-06 0.1 11.6 0.0 166 202 29 65 27 73 0.91 Hydroxymethylglutaryl-coenzyme A reductase WGR PF05406.15 80 AAFJ01000010_00019 - 75 0.00012 22.0 0.3 1 1 4e-08 0.00014 21.8 0.3 6 73 7 74 2 75 0.88 WGR domain Latarcin PF10279.9 81 AAFJ01000010_00019 - 75 0.01 16.2 0.1 1 1 4.2e-06 0.015 15.7 0.1 48 70 47 69 45 74 0.84 Latarcin precursor Tantalus PF15386.6 59 AAFJ01000010_00019 - 75 0.047 13.8 0.1 1 2 1.3e-05 0.047 13.8 0.1 15 47 28 60 24 64 0.88 Drosophila Tantalus-like Tantalus PF15386.6 59 AAFJ01000010_00019 - 75 0.047 13.8 0.1 2 2 0.62 2.2e+03 -1.2 0.7 6 14 64 72 61 73 0.74 Drosophila Tantalus-like PPR_2 PF13041.6 50 AAFJ01000010_00019 - 75 0.14 12.4 0.9 1 1 6.5e-05 0.23 11.7 0.9 18 35 54 71 52 72 0.92 PPR repeat family PPR PF01535.20 31 AAFJ01000010_00019 - 75 0.23 11.8 1.6 1 2 2.6 9.3e+03 -2.7 0.0 22 27 26 31 21 35 0.71 PPR repeat PPR PF01535.20 31 AAFJ01000010_00019 - 75 0.23 11.8 1.6 2 2 8.7e-05 0.31 11.4 0.7 15 31 54 70 54 70 0.90 PPR repeat HD PF01966.22 122 AAFJ01000010_00021 - 539 1.8e-10 41.1 0.9 1 1 4e-14 3.6e-10 40.1 0.9 3 99 227 335 225 395 0.81 HD domain HD_6 PF18019.1 196 AAFJ01000010_00021 - 539 0.029 14.5 0.1 1 1 6.9e-06 0.062 13.4 0.1 45 135 241 324 218 370 0.67 HD domain TrwB_AAD_bind PF10412.9 386 AAFJ01000010_00022 - 459 4e-17 62.2 0.0 1 1 5e-20 6.4e-17 61.5 0.0 10 323 44 387 38 422 0.78 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 469 AAFJ01000010_00022 - 459 2e-15 56.6 0.5 1 1 2.1e-18 2.7e-15 56.2 0.5 40 384 33 387 7 405 0.81 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 AAFJ01000010_00022 - 459 1.3e-10 41.3 0.1 1 1 2.1e-13 2.7e-10 40.3 0.1 3 83 311 390 309 421 0.90 TraM recognition site of TraD and TraG DUF87 PF01935.17 227 AAFJ01000010_00022 - 459 1.2e-05 25.6 0.5 1 2 2.3e-08 2.9e-05 24.3 0.1 12 152 39 205 27 288 0.61 Helicase HerA, central domain DUF87 PF01935.17 227 AAFJ01000010_00022 - 459 1.2e-05 25.6 0.5 2 2 1.7 2.1e+03 -1.5 0.0 184 200 361 377 303 439 0.57 Helicase HerA, central domain AAA_10 PF12846.7 362 AAFJ01000010_00022 - 459 1.3e-05 24.3 0.3 1 2 9.7e-06 0.012 14.5 0.0 20 71 48 98 44 234 0.74 AAA-like domain AAA_10 PF12846.7 362 AAFJ01000010_00022 - 459 1.3e-05 24.3 0.3 2 2 0.0015 1.9 7.3 0.0 263 312 326 382 320 391 0.84 AAA-like domain DUF853 PF05872.12 504 AAFJ01000010_00022 - 459 0.0034 16.0 0.0 1 2 5.9e-06 0.0076 14.9 0.0 14 67 40 95 28 125 0.78 Bacterial protein of unknown function (DUF853) DUF853 PF05872.12 504 AAFJ01000010_00022 - 459 0.0034 16.0 0.0 2 2 2.8 3.6e+03 -3.9 0.0 213 265 262 316 258 320 0.65 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.6 137 AAFJ01000010_00022 - 459 0.007 16.6 0.0 1 1 1.8e-05 0.023 15.0 0.0 4 29 48 73 45 109 0.85 AAA domain AAA_16 PF13191.6 170 AAFJ01000010_00022 - 459 0.016 15.6 0.0 1 3 6.1e-05 0.078 13.4 0.0 23 61 48 88 43 112 0.68 AAA ATPase domain AAA_16 PF13191.6 170 AAFJ01000010_00022 - 459 0.016 15.6 0.0 2 3 5.2 6.7e+03 -2.7 0.0 7 7 189 189 147 223 0.52 AAA ATPase domain AAA_16 PF13191.6 170 AAFJ01000010_00022 - 459 0.016 15.6 0.0 3 3 3.2 4.1e+03 -2.0 0.0 106 129 341 372 275 378 0.65 AAA ATPase domain ATPase_2 PF01637.18 233 AAFJ01000010_00022 - 459 0.018 14.9 0.1 1 1 5e-05 0.064 13.2 0.1 21 57 50 86 43 241 0.85 ATPase domain predominantly from Archaea ABC_tran PF00005.27 137 AAFJ01000010_00022 - 459 0.034 14.7 0.1 1 1 7.6e-05 0.097 13.2 0.1 15 80 53 171 47 350 0.76 ABC transporter Zeta_toxin PF06414.12 199 AAFJ01000010_00022 - 459 0.042 13.1 0.0 1 1 6.8e-05 0.087 12.1 0.0 20 51 53 85 43 98 0.85 Zeta toxin DUF1548 PF07579.11 135 AAFJ01000010_00022 - 459 0.11 12.8 1.9 1 2 0.00034 0.44 10.9 0.2 54 128 194 270 170 276 0.80 Domain of Unknown Function (DUF1548) DUF1548 PF07579.11 135 AAFJ01000010_00022 - 459 0.11 12.8 1.9 2 2 0.71 9.1e+02 0.1 0.1 23 75 276 331 271 355 0.73 Domain of Unknown Function (DUF1548) FtsK_SpoIIIE PF01580.18 243 AAFJ01000010_00022 - 459 0.13 11.6 0.0 1 1 0.00022 0.28 10.5 0.0 35 60 43 70 15 95 0.82 FtsK/SpoIIIE family ArlS_N PF18719.1 128 AAFJ01000010_00022 - 459 0.91 9.7 4.0 1 2 0.25 3.2e+02 1.5 0.6 25 99 180 248 170 274 0.74 ArlS sensor domain ArlS_N PF18719.1 128 AAFJ01000010_00022 - 459 0.91 9.7 4.0 2 2 0.0016 2.1 8.6 0.2 17 73 322 379 307 386 0.77 ArlS sensor domain OSTMP1 PF09777.9 234 AAFJ01000010_00023 - 269 1.2 8.5 3.2 1 2 0.00034 6.1 6.2 0.3 184 221 118 157 108 166 0.86 Osteopetrosis-associated transmembrane protein 1 precursor OSTMP1 PF09777.9 234 AAFJ01000010_00023 - 269 1.2 8.5 3.2 2 2 0.0034 61 2.9 0.2 192 228 233 267 203 269 0.73 Osteopetrosis-associated transmembrane protein 1 precursor MnmE_helical PF12631.7 206 AAFJ01000010_00024 - 221 0.44 10.7 1.7 1 1 3.9e-05 0.7 10.0 1.7 30 90 16 74 8 217 0.69 MnmE helical domain HTH_3 PF01381.22 55 AAFJ01000010_00025 - 86 1.2e-10 41.3 0.0 1 1 4.3e-14 1.9e-10 40.6 0.0 1 55 13 67 13 67 0.97 Helix-turn-helix HTH_19 PF12844.7 65 AAFJ01000010_00025 - 86 1.2e-08 34.8 0.0 1 1 3.3e-12 1.5e-08 34.5 0.0 1 64 10 72 10 73 0.97 Helix-turn-helix domain HTH_31 PF13560.6 64 AAFJ01000010_00025 - 86 4.5e-05 23.7 0.0 1 2 2.3e-08 0.0001 22.5 0.0 2 47 9 53 8 67 0.89 Helix-turn-helix domain HTH_31 PF13560.6 64 AAFJ01000010_00025 - 86 4.5e-05 23.7 0.0 2 2 0.57 2.5e+03 -1.1 0.0 31 47 64 80 61 83 0.70 Helix-turn-helix domain APG12 PF04110.13 87 AAFJ01000010_00025 - 86 0.1 13.0 0.0 1 1 2.9e-05 0.13 12.7 0.0 34 78 24 68 8 72 0.82 Ubiquitin-like autophagy protein Apg12 AAA_19 PF13245.6 146 AAFJ01000010_00026 - 487 6.3e-14 52.5 0.2 1 2 3.1e-15 4.6e-12 46.5 0.0 6 146 12 233 6 233 0.79 AAA domain AAA_19 PF13245.6 146 AAFJ01000010_00026 - 487 6.3e-14 52.5 0.2 2 2 0.045 68 3.8 0.1 54 126 309 383 263 391 0.68 AAA domain UvrD-helicase PF00580.21 315 AAFJ01000010_00026 - 487 6.5e-12 45.6 17.8 1 3 1.7e-05 0.026 14.1 0.2 1 33 3 36 3 125 0.77 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 AAFJ01000010_00026 - 487 6.5e-12 45.6 17.8 2 3 5.5e-13 8.3e-10 38.7 1.7 246 311 182 244 129 250 0.72 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 AAFJ01000010_00026 - 487 6.5e-12 45.6 17.8 3 3 1.5 2.3e+03 -2.2 3.8 168 231 318 439 245 485 0.47 UvrD/REP helicase N-terminal domain Viral_helicase1 PF01443.18 234 AAFJ01000010_00026 - 487 6.1e-11 42.5 0.3 1 3 0.0024 3.6 7.3 0.0 2 55 20 75 19 82 0.72 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 AAFJ01000010_00026 - 487 6.1e-11 42.5 0.3 2 3 1.9e-08 2.8e-05 24.0 0.1 44 198 175 330 133 332 0.73 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 AAFJ01000010_00026 - 487 6.1e-11 42.5 0.3 3 3 0.0018 2.7 7.7 0.0 186 230 409 464 356 467 0.76 Viral (Superfamily 1) RNA helicase UvrD_C PF13361.6 349 AAFJ01000010_00026 - 487 4.3e-10 39.5 16.6 1 2 0.2 3e+02 0.6 0.1 260 294 41 75 30 76 0.81 UvrD-like helicase C-terminal domain UvrD_C PF13361.6 349 AAFJ01000010_00026 - 487 4.3e-10 39.5 16.6 2 2 3.2e-13 4.7e-10 39.4 12.7 189 345 160 467 101 469 0.68 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 52 AAFJ01000010_00026 - 487 6e-09 35.6 0.0 1 1 3.2e-11 4.8e-08 32.7 0.0 5 50 409 465 406 467 0.88 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 192 AAFJ01000010_00026 - 487 8.1e-06 25.7 0.0 1 2 3e-06 0.0045 16.7 0.0 2 79 3 79 2 98 0.71 AAA domain AAA_30 PF13604.6 192 AAFJ01000010_00026 - 487 8.1e-06 25.7 0.0 2 2 0.0035 5.2 6.7 0.0 84 161 187 263 154 287 0.69 AAA domain PhoH PF02562.16 205 AAFJ01000010_00026 - 487 0.00049 19.6 0.2 1 3 0.0026 3.9 6.9 0.0 6 50 4 43 1 63 0.74 PhoH-like protein PhoH PF02562.16 205 AAFJ01000010_00026 - 487 0.00049 19.6 0.2 2 3 0.00031 0.47 9.9 0.0 118 186 191 253 188 268 0.77 PhoH-like protein PhoH PF02562.16 205 AAFJ01000010_00026 - 487 0.00049 19.6 0.2 3 3 3.2 4.8e+03 -3.2 0.0 69 92 368 391 366 409 0.77 PhoH-like protein DUF2075 PF09848.9 363 AAFJ01000010_00026 - 487 0.02 14.2 0.3 1 2 0.0022 3.2 6.9 0.0 3 53 18 64 16 88 0.81 Uncharacterized conserved protein (DUF2075) DUF2075 PF09848.9 363 AAFJ01000010_00026 - 487 0.02 14.2 0.3 2 2 0.0087 13 4.9 0.1 74 183 176 270 138 308 0.75 Uncharacterized conserved protein (DUF2075) Peptidase_M6 PF05547.11 656 AAFJ01000010_00026 - 487 0.025 12.9 0.1 1 1 2.5e-05 0.037 12.4 0.1 432 493 176 235 152 259 0.82 Immune inhibitor A peptidase M6 Helicase_RecD PF05127.14 177 AAFJ01000010_00026 - 487 0.04 13.8 0.7 1 3 0.063 94 2.8 0.0 2 46 21 65 20 93 0.67 Helicase Helicase_RecD PF05127.14 177 AAFJ01000010_00026 - 487 0.04 13.8 0.7 2 3 0.0014 2 8.2 0.0 77 159 179 258 135 267 0.74 Helicase Helicase_RecD PF05127.14 177 AAFJ01000010_00026 - 487 0.04 13.8 0.7 3 3 2 3e+03 -2.1 0.0 55 98 431 474 409 475 0.76 Helicase AAA_11 PF13086.6 261 AAFJ01000010_00026 - 487 0.11 12.3 0.5 1 3 0.013 19 4.9 0.0 19 64 18 67 4 93 0.64 AAA domain AAA_11 PF13086.6 261 AAFJ01000010_00026 - 487 0.11 12.3 0.5 2 3 0.021 31 4.2 0.0 209 253 184 227 180 227 0.84 AAA domain AAA_11 PF13086.6 261 AAFJ01000010_00026 - 487 0.11 12.3 0.5 3 3 0.8 1.2e+03 -1.0 0.1 162 206 370 414 253 442 0.55 AAA domain ResIII PF04851.15 171 AAFJ01000010_00026 - 487 0.34 10.9 8.2 1 3 4.4e-05 0.065 13.2 1.8 27 84 19 72 4 254 0.77 Type III restriction enzyme, res subunit ResIII PF04851.15 171 AAFJ01000010_00026 - 487 0.34 10.9 8.2 2 3 1.7 2.5e+03 -1.7 0.0 72 107 268 306 225 326 0.62 Type III restriction enzyme, res subunit ResIII PF04851.15 171 AAFJ01000010_00026 - 487 0.34 10.9 8.2 3 3 2.8 4.1e+03 -2.4 0.1 84 96 376 397 331 428 0.49 Type III restriction enzyme, res subunit Thioredoxin_7 PF13899.6 83 AAFJ01000010_00027 - 141 4.1e-05 23.7 0.0 1 1 1.2e-08 5.2e-05 23.4 0.0 8 63 30 85 23 106 0.75 Thioredoxin-like Thioredoxin_2 PF13098.6 109 AAFJ01000010_00027 - 141 0.00038 20.9 0.4 1 1 2.5e-07 0.0011 19.4 0.4 4 50 37 79 34 128 0.82 Thioredoxin-like domain Thioredox_DsbH PF03190.15 163 AAFJ01000010_00027 - 141 0.047 13.6 0.2 1 1 1.2e-05 0.055 13.4 0.2 29 81 31 83 25 133 0.92 Protein of unknown function, DUF255 Redoxin PF08534.10 147 AAFJ01000010_00027 - 141 0.17 11.6 0.0 1 1 4.6e-05 0.2 11.3 0.0 24 70 33 80 24 110 0.85 Redoxin TrbC_Ftype PF09673.10 112 AAFJ01000010_00028 - 313 2e-16 60.0 0.0 1 1 7.7e-20 3.5e-16 59.3 0.0 1 112 158 289 158 289 0.85 Type-F conjugative transfer system pilin assembly protein DUF1694 PF07997.11 117 AAFJ01000010_00028 - 313 0.0015 18.6 0.5 1 1 1.9e-06 0.0085 16.2 0.5 40 92 134 186 120 192 0.90 Protein of unknown function (DUF1694) DUF3502 PF12010.8 130 AAFJ01000010_00028 - 313 0.028 15.0 2.0 1 2 2.4 1.1e+04 -3.0 4.5 69 69 101 101 19 189 0.60 Domain of unknown function (DUF3502) DUF3502 PF12010.8 130 AAFJ01000010_00028 - 313 0.028 15.0 2.0 2 2 6.3e-06 0.028 15.0 2.0 51 124 236 308 190 310 0.78 Domain of unknown function (DUF3502) Thioredoxin PF00085.20 103 AAFJ01000010_00028 - 313 0.039 14.0 0.3 1 1 2.5e-05 0.11 12.5 0.3 52 94 223 266 212 273 0.82 Thioredoxin TraU PF06834.11 307 AAFJ01000010_00029 - 333 9.6e-97 323.9 0.0 1 1 6.1e-101 1.1e-96 323.8 0.0 1 306 34 332 34 333 0.95 TraU protein RhoGAP PF00620.27 152 AAFJ01000010_00031 - 199 0.0012 18.7 1.6 1 2 1.3e-07 0.0012 18.7 1.6 24 112 47 132 37 134 0.81 RhoGAP domain RhoGAP PF00620.27 152 AAFJ01000010_00031 - 199 0.0012 18.7 1.6 2 2 0.49 4.4e+03 -2.6 0.0 47 55 170 178 135 192 0.49 RhoGAP domain DUF4252 PF14060.6 157 AAFJ01000010_00031 - 199 0.32 10.9 8.4 1 2 0.13 1.2e+03 -0.7 0.1 111 125 26 40 4 65 0.47 Domain of unknown function (DUF4252) DUF4252 PF14060.6 157 AAFJ01000010_00031 - 199 0.32 10.9 8.4 2 2 9.6e-06 0.086 12.7 4.0 28 94 81 146 72 154 0.84 Domain of unknown function (DUF4252) ALP_N PF17989.1 147 AAFJ01000010_00034 - 305 7.7e-13 48.9 0.1 1 1 1.4e-16 1.3e-12 48.1 0.1 1 122 9 125 9 143 0.83 Actin like proteins N terminal domain FtsA PF14450.6 103 AAFJ01000010_00034 - 305 0.00018 21.9 0.2 1 2 0.00094 8.4 6.9 0.0 1 17 8 24 8 37 0.87 Cell division protein FtsA FtsA PF14450.6 103 AAFJ01000010_00034 - 305 0.00018 21.9 0.2 2 2 1.1e-05 0.099 13.1 0.0 1 43 157 201 157 285 0.80 Cell division protein FtsA DUF4879 PF16219.5 124 AAFJ01000010_00035 - 90 0.0012 19.0 0.2 1 1 7.4e-08 0.0013 18.9 0.2 54 105 22 73 4 83 0.87 Domain of unknown function (DUF4879) YopX PF09643.10 131 AAFJ01000010_00036 - 148 3e-12 46.7 2.7 1 2 0.0081 1.5e+02 2.5 0.0 2 15 8 21 7 29 0.87 YopX protein YopX PF09643.10 131 AAFJ01000010_00036 - 148 3e-12 46.7 2.7 2 2 1.3e-15 2.3e-11 43.9 1.0 44 131 32 127 20 127 0.72 YopX protein DUF4600 PF15372.6 128 AAFJ01000010_00037 - 82 0.0093 16.4 0.2 1 1 1.2e-06 0.011 16.2 0.2 37 96 7 67 2 81 0.80 Domain of unknown function (DUF4600) TMF_TATA_bd PF12325.8 115 AAFJ01000010_00037 - 82 0.023 14.9 0.1 1 1 3.9e-06 0.035 14.3 0.1 27 59 22 54 14 78 0.86 TATA element modulatory factor 1 TATA binding YopX PF09643.10 131 AAFJ01000010_00038 - 120 2.8e-08 33.9 0.6 1 1 2.2e-12 4e-08 33.4 0.6 49 131 42 119 4 119 0.75 YopX protein HTH_17 PF12728.7 51 AAFJ01000010_00041 - 169 2.5e-07 30.7 0.0 1 2 0.00089 1.2 9.3 0.0 2 27 29 55 28 65 0.77 Helix-turn-helix domain HTH_17 PF12728.7 51 AAFJ01000010_00041 - 169 2.5e-07 30.7 0.0 2 2 8.2e-07 0.0011 19.1 0.0 5 27 99 121 90 127 0.92 Helix-turn-helix domain HTH_3 PF01381.22 55 AAFJ01000010_00041 - 169 1.6e-05 24.8 0.0 1 2 4.9e-05 0.067 13.3 0.0 2 29 21 48 20 59 0.89 Helix-turn-helix HTH_3 PF01381.22 55 AAFJ01000010_00041 - 169 1.6e-05 24.8 0.0 2 2 0.0012 1.7 8.8 0.0 6 29 92 115 89 125 0.90 Helix-turn-helix HTH_19 PF12844.7 65 AAFJ01000010_00041 - 169 6.8e-05 22.8 0.5 1 2 2.3e-06 0.0032 17.4 0.2 8 64 24 106 17 107 0.88 Helix-turn-helix domain HTH_19 PF12844.7 65 AAFJ01000010_00041 - 169 6.8e-05 22.8 0.5 2 2 0.0017 2.4 8.2 0.0 10 32 93 115 88 144 0.84 Helix-turn-helix domain MerR PF00376.23 38 AAFJ01000010_00041 - 169 0.00015 21.4 0.0 1 2 0.0015 2 8.3 0.0 1 19 30 48 30 56 0.94 MerR family regulatory protein MerR PF00376.23 38 AAFJ01000010_00041 - 169 0.00015 21.4 0.0 2 2 0.0002 0.27 11.0 0.0 4 21 100 117 99 125 0.88 MerR family regulatory protein HTH_26 PF13443.6 63 AAFJ01000010_00041 - 169 0.0011 19.4 0.1 1 2 0.023 31 5.1 0.0 5 31 23 49 12 59 0.85 Cro/C1-type HTH DNA-binding domain HTH_26 PF13443.6 63 AAFJ01000010_00041 - 169 0.0011 19.4 0.1 2 2 0.00019 0.26 11.8 0.1 4 42 89 125 88 129 0.88 Cro/C1-type HTH DNA-binding domain Phage_CI_repr PF07022.13 65 AAFJ01000010_00041 - 169 0.0014 18.7 0.0 1 2 0.97 1.3e+03 -0.5 0.0 16 26 32 42 24 65 0.80 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 AAFJ01000010_00041 - 169 0.0014 18.7 0.0 2 2 5.3e-06 0.0073 16.4 0.0 5 46 89 129 86 136 0.83 Bacteriophage CI repressor helix-turn-helix domain Terminase_5 PF06056.12 58 AAFJ01000010_00041 - 169 0.0024 17.7 0.2 1 3 0.65 9e+02 -0.1 0.0 21 34 36 49 30 53 0.83 Putative ATPase subunit of terminase (gpP-like) Terminase_5 PF06056.12 58 AAFJ01000010_00041 - 169 0.0024 17.7 0.2 2 3 0.77 1.1e+03 -0.4 0.1 29 49 58 78 41 83 0.73 Putative ATPase subunit of terminase (gpP-like) Terminase_5 PF06056.12 58 AAFJ01000010_00041 - 169 0.0024 17.7 0.2 3 3 2.7e-05 0.037 13.9 0.0 17 37 99 119 97 128 0.86 Putative ATPase subunit of terminase (gpP-like) HTH_Crp_2 PF13545.6 68 AAFJ01000010_00041 - 169 0.0028 17.6 0.0 1 3 0.29 4e+02 1.1 0.0 17 38 24 45 9 48 0.77 Crp-like helix-turn-helix domain HTH_Crp_2 PF13545.6 68 AAFJ01000010_00041 - 169 0.0028 17.6 0.0 2 3 3.8e-05 0.053 13.5 0.0 17 38 91 112 67 114 0.79 Crp-like helix-turn-helix domain HTH_Crp_2 PF13545.6 68 AAFJ01000010_00041 - 169 0.0028 17.6 0.0 3 3 2.9 3.9e+03 -2.1 0.0 4 13 139 148 129 169 0.50 Crp-like helix-turn-helix domain HTH_23 PF13384.6 50 AAFJ01000010_00041 - 169 0.0046 16.7 0.0 1 3 0.013 17 5.3 0.0 17 37 28 48 22 52 0.82 Homeodomain-like domain HTH_23 PF13384.6 50 AAFJ01000010_00041 - 169 0.0046 16.7 0.0 2 3 2.8 3.9e+03 -2.2 0.1 34 42 59 67 59 73 0.72 Homeodomain-like domain HTH_23 PF13384.6 50 AAFJ01000010_00041 - 169 0.0046 16.7 0.0 3 3 0.0016 2.2 8.2 0.0 21 37 99 115 89 120 0.91 Homeodomain-like domain MerR_1 PF13411.6 69 AAFJ01000010_00041 - 169 0.0086 16.2 0.0 1 2 0.034 47 4.2 0.0 2 24 30 52 29 67 0.84 MerR HTH family regulatory protein MerR_1 PF13411.6 69 AAFJ01000010_00041 - 169 0.0086 16.2 0.0 2 2 0.00081 1.1 9.4 0.0 5 24 100 119 98 128 0.85 MerR HTH family regulatory protein SL4P PF17618.2 88 AAFJ01000010_00041 - 169 0.026 14.6 1.6 1 2 0.0034 4.7 7.3 0.3 30 45 17 32 9 36 0.87 Uncharacterized Strongylid L4 protein SL4P PF17618.2 88 AAFJ01000010_00041 - 169 0.026 14.6 1.6 2 2 0.01 14 5.8 0.0 40 79 105 143 97 148 0.83 Uncharacterized Strongylid L4 protein Vps4_C PF09336.10 61 AAFJ01000010_00041 - 169 0.036 14.1 0.0 1 2 9e-05 0.12 12.3 0.0 8 42 9 42 4 51 0.83 Vps4 C terminal oligomerisation domain Vps4_C PF09336.10 61 AAFJ01000010_00041 - 169 0.036 14.1 0.0 2 2 3.2 4.5e+03 -2.3 0.0 21 45 135 159 125 163 0.73 Vps4 C terminal oligomerisation domain Phage_terminase PF10668.9 60 AAFJ01000010_00041 - 169 0.054 13.5 0.1 1 2 0.016 23 5.1 0.0 22 44 28 50 8 53 0.84 Phage terminase small subunit Phage_terminase PF10668.9 60 AAFJ01000010_00041 - 169 0.054 13.5 0.1 2 2 0.008 11 6.1 0.0 22 42 95 115 76 121 0.84 Phage terminase small subunit SNase PF00565.17 108 AAFJ01000010_00042 - 197 5.7e-24 84.7 0.4 1 1 1e-27 9.2e-24 84.0 0.4 1 108 90 183 90 183 0.93 Staphylococcal nuclease homologue O-antigen_lig PF13425.6 468 AAFJ01000010_00042 - 197 0.022 13.6 4.2 1 1 3e-06 0.027 13.3 4.2 230 377 6 166 3 180 0.73 O-antigen ligase like membrane protein DUF4065 PF13274.6 114 AAFJ01000010_00043 - 56 0.001 19.9 0.8 1 2 0.64 1.1e+04 -2.8 0.0 64 66 14 16 3 27 0.48 Protein of unknown function (DUF4065) DUF4065 PF13274.6 114 AAFJ01000010_00043 - 56 0.001 19.9 0.8 2 2 7.4e-08 0.0013 19.6 0.5 1 27 30 56 30 56 0.95 Protein of unknown function (DUF4065) N6_N4_Mtase PF01555.18 231 AAFJ01000010_00044 - 788 3.2e-15 56.5 7.5 1 3 3.3e-08 0.00012 21.9 0.0 171 223 20 71 8 76 0.90 DNA methylase N6_N4_Mtase PF01555.18 231 AAFJ01000010_00044 - 788 3.2e-15 56.5 7.5 2 3 0.15 5.3e+02 0.1 0.6 95 116 87 128 81 241 0.62 DNA methylase N6_N4_Mtase PF01555.18 231 AAFJ01000010_00044 - 788 3.2e-15 56.5 7.5 3 3 4.3e-12 1.5e-08 34.6 1.9 1 92 336 449 336 506 0.80 DNA methylase UPF0020 PF01170.18 197 AAFJ01000010_00044 - 788 4.1e-06 26.6 0.0 1 2 0.00011 0.39 10.4 0.0 28 55 39 66 35 154 0.74 Putative RNA methylase family UPF0020 UPF0020 PF01170.18 197 AAFJ01000010_00044 - 788 4.1e-06 26.6 0.0 2 2 1.4e-05 0.051 13.3 0.0 75 132 287 346 254 351 0.80 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 182 AAFJ01000010_00044 - 788 0.0038 16.9 0.0 1 2 0.00014 0.5 10.0 0.0 34 79 28 76 10 145 0.80 Conserved hypothetical protein 95 Cons_hypoth95 PF03602.15 182 AAFJ01000010_00044 - 788 0.0038 16.9 0.0 2 2 0.011 38 3.9 0.0 104 124 326 346 288 356 0.71 Conserved hypothetical protein 95 AviRa PF11599.8 234 AAFJ01000010_00044 - 788 0.021 14.3 0.6 1 3 2.7 9.8e+03 -4.3 0.0 57 65 43 51 37 55 0.82 RRNA methyltransferase AviRa AviRa PF11599.8 234 AAFJ01000010_00044 - 788 0.021 14.3 0.6 2 3 3.4e-05 0.12 11.8 0.0 111 182 284 351 265 355 0.77 RRNA methyltransferase AviRa AviRa PF11599.8 234 AAFJ01000010_00044 - 788 0.021 14.3 0.6 3 3 0.19 6.9e+02 -0.5 0.0 192 218 395 420 385 433 0.71 RRNA methyltransferase AviRa Stork_head PF10264.9 79 AAFJ01000010_00044 - 788 0.049 13.8 0.0 1 1 3.8e-05 0.13 12.4 0.0 9 62 563 616 559 627 0.91 Winged helix Storkhead-box1 domain N6_N4_Mtase PF01555.18 231 AAFJ01000010_00045 - 277 9.5e-26 90.9 0.2 1 2 1.4e-17 2e-14 53.9 0.0 134 230 10 100 1 101 0.82 DNA methylase N6_N4_Mtase PF01555.18 231 AAFJ01000010_00045 - 277 9.5e-26 90.9 0.2 2 2 5.4e-12 8.1e-09 35.5 0.2 1 73 132 238 132 277 0.80 DNA methylase Methyltransf_25 PF13649.6 97 AAFJ01000010_00045 - 277 2.4e-08 34.6 0.0 1 2 1.2e-10 1.7e-07 31.8 0.0 1 77 65 145 65 157 0.84 Methyltransferase domain Methyltransf_25 PF13649.6 97 AAFJ01000010_00045 - 277 2.4e-08 34.6 0.0 2 2 0.86 1.3e+03 0.2 0.0 81 95 191 205 163 206 0.79 Methyltransferase domain Methyltransf_11 PF08241.12 96 AAFJ01000010_00045 - 277 3.1e-08 34.2 0.0 1 2 1.9e-08 2.9e-05 24.6 0.0 1 68 66 138 66 154 0.90 Methyltransferase domain Methyltransf_11 PF08241.12 96 AAFJ01000010_00045 - 277 3.1e-08 34.2 0.0 2 2 0.0036 5.4 7.7 0.0 48 94 162 209 141 211 0.76 Methyltransferase domain Methyltransf_31 PF13847.6 152 AAFJ01000010_00045 - 277 6.3e-08 32.5 0.1 1 1 7.7e-11 1.2e-07 31.7 0.1 2 106 60 208 59 258 0.71 Methyltransferase domain MTS PF05175.14 169 AAFJ01000010_00045 - 277 2.1e-06 27.4 0.0 1 1 2.2e-09 3.2e-06 26.8 0.0 23 165 54 208 44 212 0.74 Methyltransferase small domain UPF0020 PF01170.18 197 AAFJ01000010_00045 - 277 4.7e-05 23.2 0.1 1 1 1.1e-06 0.0016 18.1 0.1 32 139 65 149 56 156 0.79 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 165 AAFJ01000010_00045 - 277 0.0002 21.0 0.1 1 2 5.9e-07 0.00089 18.9 0.0 3 81 64 141 62 146 0.90 RNA cap guanine-N2 methyltransferase Methyltransf_15 PF09445.10 165 AAFJ01000010_00045 - 277 0.0002 21.0 0.1 2 2 0.75 1.1e+03 -1.0 0.0 40 69 180 210 172 239 0.75 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 182 AAFJ01000010_00045 - 277 0.0027 17.4 0.0 1 1 3.2e-06 0.0048 16.6 0.0 42 126 62 144 52 159 0.80 Conserved hypothetical protein 95 N6_Mtase PF02384.16 312 AAFJ01000010_00045 - 277 0.0058 15.9 0.0 1 1 6.4e-06 0.0096 15.2 0.0 36 136 53 142 45 169 0.78 N-6 DNA Methylase Methyltransf_12 PF08242.12 99 AAFJ01000010_00045 - 277 0.024 15.4 0.0 1 2 4.5e-05 0.068 13.9 0.0 1 86 66 152 66 157 0.84 Methyltransferase domain Methyltransf_12 PF08242.12 99 AAFJ01000010_00045 - 277 0.024 15.4 0.0 2 2 3.8 5.7e+03 -1.9 0.0 77 94 187 204 149 206 0.66 Methyltransferase domain Methyltransf_23 PF13489.6 165 AAFJ01000010_00045 - 277 0.027 14.3 0.0 1 1 4.5e-05 0.068 13.0 0.0 12 62 50 120 39 243 0.75 Methyltransferase domain PrmA PF06325.13 296 AAFJ01000010_00045 - 277 0.15 11.4 0.0 1 1 0.00015 0.22 10.9 0.0 158 232 58 137 48 153 0.73 Ribosomal protein L11 methyltransferase (PrmA) DUF1883 PF08980.10 89 AAFJ01000010_00046 - 99 0.15 12.0 0.3 1 2 0.08 1.4e+03 -0.8 0.0 14 33 8 27 2 37 0.67 Domain of unknown function (DUF1883) DUF1883 PF08980.10 89 AAFJ01000010_00046 - 99 0.15 12.0 0.3 2 2 2.3e-05 0.41 10.6 0.1 3 39 41 78 39 90 0.77 Domain of unknown function (DUF1883) ParE_toxin PF05016.15 90 AAFJ01000010_00047 - 95 3.8e-09 37.0 0.2 1 1 7.8e-13 4.7e-09 36.8 0.2 2 90 6 94 5 94 0.80 ParE toxin of type II toxin-antitoxin system, parDE YafQ_toxin PF15738.5 88 AAFJ01000010_00047 - 95 0.0008 19.7 0.2 1 1 1.7e-07 0.00099 19.4 0.2 1 86 3 93 3 95 0.78 Bacterial toxin of type II toxin-antitoxin system, YafQ IKKbetaNEMObind PF12179.8 37 AAFJ01000010_00047 - 95 0.09 12.8 0.2 1 1 2.7e-05 0.16 12.0 0.2 6 27 22 43 21 46 0.92 I-kappa-kinase-beta NEMO binding domain RHH_5 PF07878.11 43 AAFJ01000010_00048 - 76 0.00016 21.5 0.0 1 1 6.6e-08 0.00024 20.9 0.0 3 35 9 41 7 46 0.93 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 RHH_3 PF12651.7 44 AAFJ01000010_00048 - 76 0.00048 20.0 0.0 1 1 2.5e-07 0.00088 19.2 0.0 5 39 10 44 8 46 0.92 Ribbon-helix-helix domain HicB_lk_antitox PF15919.5 123 AAFJ01000010_00048 - 76 0.012 15.7 0.0 1 1 5.3e-06 0.019 15.1 0.0 88 122 6 40 2 41 0.94 HicB_like antitoxin of bacterial toxin-antitoxin system CcdA PF07362.12 71 AAFJ01000010_00048 - 76 0.025 15.0 0.1 1 1 9.6e-06 0.034 14.6 0.1 7 60 17 75 12 76 0.81 Post-segregation antitoxin CcdA PuR_N PF09182.10 70 AAFJ01000010_00048 - 76 0.16 11.9 0.1 1 1 5.7e-05 0.2 11.6 0.1 11 43 9 43 5 60 0.79 Bacterial purine repressor, N-terminal Bro-N PF02498.17 95 AAFJ01000010_00049 - 281 1.6e-22 80.0 2.7 1 2 5.2e-26 1.9e-22 79.8 0.0 1 95 26 116 26 116 0.85 BRO family, N-terminal domain Bro-N PF02498.17 95 AAFJ01000010_00049 - 281 1.6e-22 80.0 2.7 2 2 0.89 3.2e+03 -1.1 1.4 37 44 179 186 145 237 0.58 BRO family, N-terminal domain HTH_3 PF01381.22 55 AAFJ01000010_00049 - 281 2e-07 31.0 0.1 1 1 1.9e-10 6.7e-07 29.3 0.1 2 55 206 260 205 260 0.97 Helix-turn-helix HTH_19 PF12844.7 65 AAFJ01000010_00049 - 281 4.5e-07 29.8 0.1 1 4 2 7.1e+03 -2.9 0.0 17 33 49 65 42 68 0.69 Helix-turn-helix domain HTH_19 PF12844.7 65 AAFJ01000010_00049 - 281 4.5e-07 29.8 0.1 2 4 0.39 1.4e+03 -0.6 0.0 36 48 97 109 76 131 0.67 Helix-turn-helix domain HTH_19 PF12844.7 65 AAFJ01000010_00049 - 281 4.5e-07 29.8 0.1 3 4 1 3.7e+03 -2.0 0.2 15 27 165 180 154 184 0.55 Helix-turn-helix domain HTH_19 PF12844.7 65 AAFJ01000010_00049 - 281 4.5e-07 29.8 0.1 4 4 1.2e-10 4.5e-07 29.8 0.1 1 64 202 265 202 266 0.94 Helix-turn-helix domain ZapD PF07072.11 210 AAFJ01000010_00049 - 281 0.00027 20.7 3.0 1 2 3.8e-06 0.014 15.2 0.1 17 67 32 82 18 123 0.87 Cell division protein ZapD PF07072.11 210 AAFJ01000010_00049 - 281 0.00027 20.7 3.0 2 2 0.0047 17 5.1 0.6 67 102 144 179 131 184 0.87 Cell division protein HTH_31 PF13560.6 64 AAFJ01000010_00049 - 281 0.0048 17.2 0.0 1 1 2.6e-06 0.0092 16.3 0.0 2 46 201 245 200 260 0.85 Helix-turn-helix domain SLT PF01464.20 117 AAFJ01000010_00050 - 143 3.1e-22 78.4 0.0 1 1 8.1e-26 3.6e-22 78.2 0.0 2 96 18 116 17 134 0.92 Transglycosylase SLT domain Glucosaminidase PF01832.20 87 AAFJ01000010_00050 - 143 0.017 15.6 0.2 1 1 7.8e-06 0.035 14.6 0.2 2 43 17 61 16 136 0.55 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Lys PF00062.20 124 AAFJ01000010_00050 - 143 0.07 13.4 0.1 1 1 3.6e-05 0.16 12.2 0.0 31 62 36 68 27 89 0.82 C-type lysozyme/alpha-lactalbumin family UPF0146 PF03686.13 129 AAFJ01000010_00050 - 143 0.084 12.7 0.0 1 1 2.9e-05 0.13 12.1 0.0 37 73 57 96 45 99 0.79 Uncharacterised protein family (UPF0146) YafQ_toxin PF15738.5 88 AAFJ01000010_00052 - 101 9.3e-26 90.0 0.7 1 1 1.2e-29 1.1e-25 89.8 0.7 4 88 15 99 12 99 0.97 Bacterial toxin of type II toxin-antitoxin system, YafQ ASL_C PF08328.11 115 AAFJ01000010_00052 - 101 0.12 12.5 0.1 1 1 2.1e-05 0.19 11.8 0.1 59 99 7 47 2 57 0.89 Adenylosuccinate lyase C-terminal DDE_Tnp_1_7 PF13843.6 350 AAFJ01000010_00053 - 103 0.0083 15.5 1.0 1 1 2.5e-06 0.009 15.3 1.0 84 128 14 57 12 88 0.89 Transposase IS4 LETM1 PF07766.13 268 AAFJ01000010_00053 - 103 0.009 15.4 4.8 1 1 2.9e-06 0.01 15.2 4.8 91 135 22 73 13 96 0.67 LETM1-like protein Baculo_p24 PF05073.12 182 AAFJ01000010_00053 - 103 0.035 13.9 2.5 1 1 1.1e-05 0.038 13.8 2.5 92 174 13 101 2 103 0.74 Baculovirus P24 capsid protein PIEZO PF15917.5 228 AAFJ01000010_00053 - 103 0.073 12.5 5.7 1 1 2.3e-05 0.084 12.3 5.7 94 151 12 70 8 93 0.70 Piezo DUF4446 PF14584.6 150 AAFJ01000010_00053 - 103 1.3 9.0 6.0 1 1 0.00046 1.6 8.7 5.6 24 93 19 90 14 94 0.83 Protein of unknown function (DUF4446) Oxidored_q3 PF00499.20 144 AAFJ01000010_00054 - 210 0.0036 17.0 0.2 1 1 2e-06 0.0052 16.5 0.2 8 61 132 196 127 210 0.81 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TctA PF01970.16 409 AAFJ01000010_00054 - 210 0.016 14.0 0.6 1 1 8.4e-06 0.022 13.5 0.6 258 376 64 183 42 186 0.73 Tripartite tricarboxylate transporter TctA family Carbpep_Y_N PF05388.11 125 AAFJ01000010_00054 - 210 0.027 15.0 2.7 1 2 1.1e-05 0.027 15.0 0.8 24 106 3 87 1 98 0.76 Carboxypeptidase Y pro-peptide Carbpep_Y_N PF05388.11 125 AAFJ01000010_00054 - 210 0.027 15.0 2.7 2 2 0.61 1.6e+03 -0.4 0.1 43 65 102 124 86 140 0.58 Carboxypeptidase Y pro-peptide Phage_holin_3_6 PF07332.11 113 AAFJ01000010_00054 - 210 0.11 12.6 0.3 1 1 6.9e-05 0.18 11.9 0.3 45 103 135 198 131 205 0.55 Putative Actinobacterial Holin-X, holin superfamily III RseC_MucC PF04246.12 130 AAFJ01000010_00054 - 210 0.13 12.2 1.3 1 1 8.1e-05 0.21 11.6 1.3 67 120 137 191 132 198 0.75 Positive regulator of sigma(E), RseC/MucC DUF2207 PF09972.9 492 AAFJ01000010_00054 - 210 0.27 10.0 7.3 1 1 0.00014 0.35 9.6 7.3 273 446 23 198 12 203 0.51 Predicted membrane protein (DUF2207) Spore_YhaL PF14147.6 52 AAFJ01000010_00054 - 210 4 7.2 5.2 1 2 0.00068 1.7 8.4 0.6 6 24 141 159 138 165 0.90 Sporulation protein YhaL Spore_YhaL PF14147.6 52 AAFJ01000010_00054 - 210 4 7.2 5.2 2 2 0.28 7.1e+02 -0.0 0.4 20 32 182 192 166 207 0.48 Sporulation protein YhaL Bacillus_PapR PF05968.11 45 AAFJ01000010_00055 - 93 0.022 14.6 0.1 1 1 5.4e-06 0.048 13.5 0.1 1 30 1 34 1 37 0.85 Bacillus PapR protein YtpI PF14007.6 87 AAFJ01000010_00055 - 93 0.024 14.8 9.1 1 3 0.0029 26 5.1 0.3 36 58 5 27 2 28 0.88 YtpI-like protein YtpI PF14007.6 87 AAFJ01000010_00055 - 93 0.024 14.8 9.1 2 3 4.3e-06 0.038 14.1 0.1 49 76 36 63 33 67 0.90 YtpI-like protein YtpI PF14007.6 87 AAFJ01000010_00055 - 93 0.024 14.8 9.1 3 3 0.059 5.3e+02 0.8 0.7 42 52 65 75 61 90 0.52 YtpI-like protein TraL PF07178.11 90 AAFJ01000010_00056 - 101 3.1e-13 50.0 0.5 1 1 2e-17 3.6e-13 49.8 0.5 2 89 10 98 9 99 0.87 TraL protein TraE PF05309.11 182 AAFJ01000010_00057 - 197 1e-32 113.0 0.8 1 1 7.1e-37 1.3e-32 112.7 0.8 1 180 1 180 1 181 0.97 TraE protein TraK PF06586.11 231 AAFJ01000010_00058 - 260 8.9e-23 81.2 0.2 1 1 1.4e-26 2.6e-22 79.7 0.2 5 215 6 230 3 236 0.88 TraK protein TrbI PF03743.14 187 AAFJ01000010_00059 - 436 4.8e-35 121.1 1.5 1 1 2.7e-38 8e-35 120.4 1.5 2 186 213 415 212 416 0.93 Bacterial conjugation TrbI-like protein Cep57_CLD PF14073.6 178 AAFJ01000010_00059 - 436 0.0019 18.2 4.7 1 2 6.4e-07 0.0019 18.2 4.7 40 138 58 157 43 173 0.76 Centrosome localisation domain of Cep57 Cep57_CLD PF14073.6 178 AAFJ01000010_00059 - 436 0.0019 18.2 4.7 2 2 1.4 4.3e+03 -2.4 0.4 39 48 418 427 401 435 0.38 Centrosome localisation domain of Cep57 O-antigen_lig PF13425.6 468 AAFJ01000010_00059 - 436 0.08 11.7 8.5 1 1 4.4e-05 0.13 11.0 8.5 234 351 14 147 6 153 0.71 O-antigen ligase like membrane protein YrzK PF17449.2 54 AAFJ01000010_00059 - 436 0.35 11.2 0.0 1 2 0.00012 0.35 11.2 0.0 14 53 52 93 47 94 0.83 Uncharacterized YrzK-like YrzK PF17449.2 54 AAFJ01000010_00059 - 436 0.35 11.2 0.0 2 2 6 1.8e+04 -5.1 2.4 44 53 201 210 200 211 0.83 Uncharacterized YrzK-like YabA PF06156.13 102 AAFJ01000010_00059 - 436 0.61 10.8 11.7 1 3 2.1e-05 0.061 14.0 5.6 17 79 70 147 61 150 0.78 Initiation control protein YabA YabA PF06156.13 102 AAFJ01000010_00059 - 436 0.61 10.8 11.7 2 3 0.62 1.9e+03 -0.4 0.3 22 31 139 148 131 211 0.57 Initiation control protein YabA YabA PF06156.13 102 AAFJ01000010_00059 - 436 0.61 10.8 11.7 3 3 2.1 6.2e+03 -2.1 0.1 50 57 418 424 373 435 0.54 Initiation control protein YabA DUF4481 PF14800.6 293 AAFJ01000010_00059 - 436 9 5.7 6.3 1 2 1.1 3.2e+03 -2.7 0.1 98 132 25 60 20 65 0.69 Domain of unknown function (DUF4481) DUF4481 PF14800.6 293 AAFJ01000010_00059 - 436 9 5.7 6.3 2 2 0.00051 1.5 8.2 2.3 177 249 84 155 77 165 0.86 Domain of unknown function (DUF4481) Thioredoxin_2 PF13098.6 109 AAFJ01000010_00060 - 248 1.4e-15 57.6 0.2 1 2 2.5 6.5e+03 -2.4 0.0 92 107 28 43 22 44 0.75 Thioredoxin-like domain Thioredoxin_2 PF13098.6 109 AAFJ01000010_00060 - 248 1.4e-15 57.6 0.2 2 2 1.4e-18 3.5e-15 56.4 0.1 2 99 121 240 120 247 0.95 Thioredoxin-like domain DsbC_N PF10411.9 54 AAFJ01000010_00060 - 248 8.2e-10 38.0 0.1 1 1 5.8e-13 1.5e-09 37.2 0.1 2 50 30 79 29 82 0.94 Disulfide bond isomerase protein N-terminus Thioredoxin_4 PF13462.6 166 AAFJ01000010_00060 - 248 0.0014 18.8 4.8 1 2 0.00015 0.39 10.9 0.3 17 35 128 146 120 157 0.83 Thioredoxin Thioredoxin_4 PF13462.6 166 AAFJ01000010_00060 - 248 0.0014 18.8 4.8 2 2 0.00031 0.8 9.8 0.5 88 164 162 246 148 247 0.60 Thioredoxin Glutaredoxin PF00462.24 60 AAFJ01000010_00060 - 248 0.0033 17.6 0.1 1 2 3.9e-06 0.01 16.1 0.0 2 44 129 173 128 186 0.81 Glutaredoxin Glutaredoxin PF00462.24 60 AAFJ01000010_00060 - 248 0.0033 17.6 0.1 2 2 1.7 4.3e+03 -2.0 0.0 39 55 209 225 191 228 0.63 Glutaredoxin TraF PF13728.6 224 AAFJ01000010_00060 - 248 0.086 12.7 0.1 1 2 0.014 37 4.0 0.0 126 147 121 142 100 148 0.87 F plasmid transfer operon protein TraF PF13728.6 224 AAFJ01000010_00060 - 248 0.086 12.7 0.1 2 2 0.0023 6 6.6 0.0 181 212 208 239 184 247 0.76 F plasmid transfer operon protein Thioredoxin_8 PF13905.6 95 AAFJ01000010_00060 - 248 0.1 12.9 1.3 1 2 0.86 2.2e+03 -1.0 0.0 23 42 49 66 43 108 0.78 Thioredoxin-like Thioredoxin_8 PF13905.6 95 AAFJ01000010_00060 - 248 0.1 12.9 1.3 2 2 0.00015 0.39 11.1 0.7 2 93 125 230 124 232 0.63 Thioredoxin-like DUF393 PF04134.12 113 AAFJ01000010_00060 - 248 0.14 13.5 0.0 1 2 6.3 1.6e+04 -2.8 0.0 26 54 83 111 71 120 0.63 Protein of unknown function, DUF393 DUF393 PF04134.12 113 AAFJ01000010_00060 - 248 0.14 13.5 0.0 2 2 0.00013 0.33 12.3 0.0 4 35 133 164 129 217 0.74 Protein of unknown function, DUF393 SH3_3 PF08239.11 55 AAFJ01000010_00061 - 303 6.2e-06 26.4 0.0 1 1 2.3e-09 1.4e-05 25.3 0.0 3 50 255 296 253 300 0.90 Bacterial SH3 domain TraV PF09676.10 132 AAFJ01000010_00061 - 303 0.00078 20.4 1.2 1 2 1.3e-07 0.00078 20.4 1.2 1 61 27 86 27 107 0.68 Type IV conjugative transfer system lipoprotein (TraV) TraV PF09676.10 132 AAFJ01000010_00061 - 303 0.00078 20.4 1.2 2 2 1.5 9.1e+03 -2.4 9.4 20 61 143 176 116 246 0.61 Type IV conjugative transfer system lipoprotein (TraV) DUF3410 PF11890.8 81 AAFJ01000010_00061 - 303 0.083 12.7 0.0 1 1 3.6e-05 0.21 11.4 0.0 25 45 43 63 30 76 0.82 Domain of unknown function (DUF3410) SH3_3 PF08239.11 55 AAFJ01000010_00062 - 160 0.00054 20.2 0.1 1 1 1.6e-07 0.00093 19.4 0.1 4 39 106 143 103 152 0.84 Bacterial SH3 domain PBP_dimer PF03717.15 180 AAFJ01000010_00062 - 160 0.027 14.8 0.7 1 1 5.9e-06 0.035 14.4 0.7 42 126 34 124 13 143 0.80 Penicillin-binding Protein dimerisation domain Closter_coat PF01785.17 189 AAFJ01000010_00062 - 160 0.064 12.5 0.2 1 1 1.5e-05 0.088 12.1 0.2 12 99 22 113 18 115 0.84 Closterovirus coat protein TraC_F_IV PF11130.8 238 AAFJ01000010_00064 - 837 5.7e-32 111.2 0.0 1 2 1.2e-34 2.1e-31 109.4 0.0 2 223 37 246 36 258 0.94 F pilus assembly Type-IV secretion system for plasmid transfer TraC_F_IV PF11130.8 238 AAFJ01000010_00064 - 837 5.7e-32 111.2 0.0 2 2 1.2 2.2e+03 -2.0 0.0 66 136 744 811 738 832 0.64 F pilus assembly Type-IV secretion system for plasmid transfer AAA_10 PF12846.7 362 AAFJ01000010_00064 - 837 1.6e-10 40.5 0.2 1 1 5.2e-13 9.3e-10 38.0 0.2 19 292 457 722 446 772 0.73 AAA-like domain TrwB_AAD_bind PF10412.9 386 AAFJ01000010_00064 - 837 5.1e-08 32.2 0.0 1 2 2.5e-06 0.0045 15.9 0.0 2 127 446 573 445 605 0.75 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 AAFJ01000010_00064 - 837 5.1e-08 32.2 0.0 2 2 9.7e-06 0.017 14.0 0.0 226 288 652 719 640 796 0.68 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 137 AAFJ01000010_00064 - 837 0.0013 19.1 0.4 1 3 5.9 1.1e+04 -3.4 0.0 110 136 83 107 78 108 0.77 AAA domain AAA_22 PF13401.6 137 AAFJ01000010_00064 - 837 0.0013 19.1 0.4 2 3 0.0032 5.8 7.2 0.0 6 26 460 480 456 586 0.84 AAA domain AAA_22 PF13401.6 137 AAFJ01000010_00064 - 837 0.0013 19.1 0.4 3 3 0.0013 2.3 8.5 0.0 86 128 661 709 593 715 0.80 AAA domain ResIII PF04851.15 171 AAFJ01000010_00064 - 837 0.0024 17.9 2.1 1 2 1.4 2.6e+03 -1.7 0.1 63 85 123 149 121 190 0.62 Type III restriction enzyme, res subunit ResIII PF04851.15 171 AAFJ01000010_00064 - 837 0.0024 17.9 2.1 2 2 3.2e-05 0.057 13.4 0.2 20 151 455 689 442 706 0.57 Type III restriction enzyme, res subunit CbiA PF01656.23 128 AAFJ01000010_00064 - 837 0.0056 16.7 0.0 1 1 8.4e-06 0.015 15.3 0.0 7 104 467 574 464 597 0.77 CobQ/CobB/MinD/ParA nucleotide binding domain Zot PF05707.12 194 AAFJ01000010_00064 - 837 0.014 15.1 0.0 1 2 3.5 6.3e+03 -3.4 0.0 65 99 107 144 78 155 0.65 Zonular occludens toxin (Zot) Zot PF05707.12 194 AAFJ01000010_00064 - 837 0.014 15.1 0.0 2 2 2.2e-05 0.039 13.6 0.0 84 131 673 717 657 745 0.87 Zonular occludens toxin (Zot) TraG-D_C PF12696.7 126 AAFJ01000010_00064 - 837 0.017 15.1 0.0 1 1 2.9e-05 0.052 13.5 0.0 5 69 674 746 670 787 0.77 TraM recognition site of TraD and TraG RsgA_GTPase PF03193.16 167 AAFJ01000010_00064 - 837 0.056 13.3 0.0 1 1 7.2e-05 0.13 12.2 0.0 67 122 427 482 410 491 0.84 RsgA GTPase DUF1639 PF07797.14 50 AAFJ01000010_00064 - 837 0.073 13.1 0.1 1 2 0.0026 4.7 7.3 0.0 11 32 286 306 283 316 0.78 Protein of unknown function (DUF1639) DUF1639 PF07797.14 50 AAFJ01000010_00064 - 837 0.073 13.1 0.1 2 2 0.065 1.2e+02 2.8 0.0 13 36 546 570 543 572 0.78 Protein of unknown function (DUF1639) TrbI_Ftype PF09677.10 106 AAFJ01000010_00065 - 109 0.028 14.7 0.0 1 1 1.7e-06 0.031 14.6 0.0 13 99 15 104 4 109 0.77 Type-F conjugative transfer system protein (TrbI_Ftype) Peptidase_S26 PF10502.9 138 AAFJ01000010_00066 - 168 1.6e-15 57.1 0.0 1 1 2.5e-19 2.2e-15 56.6 0.0 2 133 40 166 39 167 0.96 Signal peptidase, peptidase S26 PRA-CH PF01502.18 74 AAFJ01000010_00066 - 168 0.14 12.0 0.0 1 1 3.5e-05 0.31 10.9 0.0 10 44 59 94 52 118 0.80 Phosphoribosyl-AMP cyclohydrolase TraH PF06122.11 361 AAFJ01000010_00067 - 468 5.3e-64 216.8 0.3 1 2 5.9e-68 5.3e-64 216.8 0.3 2 360 22 384 21 385 0.86 Conjugative relaxosome accessory transposon protein TraH PF06122.11 361 AAFJ01000010_00067 - 468 5.3e-64 216.8 0.3 2 2 0.16 1.4e+03 -1.8 0.4 156 206 391 448 388 460 0.49 Conjugative relaxosome accessory transposon protein ArfGap PF01412.18 117 AAFJ01000010_00067 - 468 0.37 10.9 1.7 1 2 5.1e-05 0.46 10.6 0.1 24 71 107 164 103 197 0.75 Putative GTPase activating protein for Arf ArfGap PF01412.18 117 AAFJ01000010_00067 - 468 0.37 10.9 1.7 2 2 0.39 3.5e+03 -1.9 0.3 44 75 416 448 398 456 0.72 Putative GTPase activating protein for Arf SAYSvFN PF10260.9 70 AAFJ01000010_00068 - 394 0.046 13.6 0.2 1 1 1.3e-05 0.12 12.3 0.2 37 60 233 256 226 265 0.78 Uncharacterized conserved domain (SAYSvFN) Ribosomal_L6e PF01159.19 111 AAFJ01000010_00068 - 394 0.84 10.2 6.1 1 1 0.00019 1.7 9.2 5.5 31 95 219 291 209 306 0.75 Ribosomal protein L6e TraN PF06986.11 240 AAFJ01000010_00069 - 722 3.3e-26 92.5 26.5 1 2 0.25 1.5e+03 -1.3 0.3 64 127 243 310 219 332 0.55 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 AAFJ01000010_00069 - 722 3.3e-26 92.5 26.5 2 2 1.5e-28 9.2e-25 87.7 20.4 56 239 498 669 476 670 0.70 Type-1V conjugative transfer system mating pair stabilisation Lectin_C PF00059.21 108 AAFJ01000010_00069 - 722 1.8e-05 25.4 0.0 1 2 3.1e-09 1.8e-05 25.4 0.0 2 58 59 114 58 146 0.89 Lectin C-type domain Lectin_C PF00059.21 108 AAFJ01000010_00069 - 722 1.8e-05 25.4 0.0 2 2 3 1.8e+04 -4.5 1.9 77 105 604 635 592 637 0.61 Lectin C-type domain Xol-1_GHMP-like PF09109.10 189 AAFJ01000010_00069 - 722 0.035 14.0 0.0 1 1 1.2e-05 0.073 12.9 0.0 91 143 250 310 233 338 0.77 Switch protein XOL-1, GHMP-like TraF PF13728.6 224 AAFJ01000010_00070 - 250 3.2e-18 66.4 7.8 1 1 7.8e-22 4.7e-18 65.8 7.8 1 171 26 193 26 237 0.84 F plasmid transfer operon protein PUA_2 PF14306.6 159 AAFJ01000010_00070 - 250 0.015 15.0 0.3 1 1 4.7e-06 0.028 14.1 0.3 74 139 52 120 29 149 0.79 PUA-like domain DUF2369 PF10179.9 95 AAFJ01000010_00070 - 250 0.18 12.2 2.7 1 2 0.048 2.9e+02 1.9 0.1 44 71 22 64 11 85 0.56 Uncharacterised conserved protein (DUF2369) DUF2369 PF10179.9 95 AAFJ01000010_00070 - 250 0.18 12.2 2.7 2 2 0.00013 0.79 10.1 0.3 19 70 104 164 84 179 0.85 Uncharacterised conserved protein (DUF2369) TraG_N PF07916.11 467 AAFJ01000010_00071 - 886 3.7e-55 187.6 16.8 1 2 2.1e-59 3.7e-55 187.6 16.8 1 466 24 476 24 477 0.90 TraG-like protein, N-terminal region TraG_N PF07916.11 467 AAFJ01000010_00071 - 886 3.7e-55 187.6 16.8 2 2 0.28 4.9e+03 -4.0 2.6 221 295 666 739 629 770 0.50 TraG-like protein, N-terminal region TIM21 PF08294.11 145 AAFJ01000010_00072 - 203 2.7 7.9 3.9 1 3 0.0013 7.5 6.4 0.4 6 44 25 63 21 69 0.89 TIM21 TIM21 PF08294.11 145 AAFJ01000010_00072 - 203 2.7 7.9 3.9 2 3 0.18 1.1e+03 -0.6 0.1 5 31 61 88 58 92 0.68 TIM21 TIM21 PF08294.11 145 AAFJ01000010_00072 - 203 2.7 7.9 3.9 3 3 0.031 1.8e+02 1.9 0.0 17 42 148 173 134 186 0.77 TIM21 YwiC PF14256.6 126 AAFJ01000010_00072 - 203 2.9 8.2 13.6 1 3 0.12 7.1e+02 0.5 4.2 33 81 8 56 2 71 0.60 YwiC-like protein YwiC PF14256.6 126 AAFJ01000010_00072 - 203 2.9 8.2 13.6 2 3 2.4e-05 0.14 12.5 1.5 62 126 62 126 53 126 0.87 YwiC-like protein YwiC PF14256.6 126 AAFJ01000010_00072 - 203 2.9 8.2 13.6 3 3 0.16 9.6e+02 0.1 0.0 33 58 149 176 128 184 0.65 YwiC-like protein T_cell_tran_alt PF15128.6 92 AAFJ01000010_00072 - 203 3.6 7.4 10.0 1 3 0.3 1.8e+03 -1.2 0.1 23 45 24 48 15 54 0.66 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 AAFJ01000010_00072 - 203 3.6 7.4 10.0 2 3 0.00012 0.69 9.7 2.2 18 45 52 79 36 90 0.80 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 AAFJ01000010_00072 - 203 3.6 7.4 10.0 3 3 0.03 1.8e+02 2.0 0.5 29 49 112 132 85 143 0.77 T-cell leukemia translocation-altered Wzy_C PF04932.15 155 AAFJ01000010_00073 - 101 0.086 12.5 0.1 1 1 1.1e-05 0.096 12.3 0.1 41 80 9 82 3 100 0.77 O-Antigen ligase DUF4713 PF15831.5 56 AAFJ01000010_00073 - 101 0.17 12.3 3.6 1 2 2.1e-05 0.18 12.2 2.2 25 49 2 26 1 36 0.84 Domain of unknown function (DUF4713) DUF4713 PF15831.5 56 AAFJ01000010_00073 - 101 0.17 12.3 3.6 2 2 0.4 3.6e+03 -1.5 0.0 14 27 67 80 62 92 0.75 Domain of unknown function (DUF4713) PFO_beta_C PF12367.8 66 AAFJ01000010_00075 - 285 0.064 13.4 1.6 1 2 1e-05 0.093 12.9 0.2 9 62 126 184 123 188 0.82 Pyruvate ferredoxin oxidoreductase beta subunit C terminal PFO_beta_C PF12367.8 66 AAFJ01000010_00075 - 285 0.064 13.4 1.6 2 2 0.52 4.6e+03 -2.2 0.1 46 57 253 264 242 269 0.81 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Phage_Treg PF04761.12 57 AAFJ01000010_00075 - 285 0.085 13.0 1.7 1 3 1 9.2e+03 -3.2 0.0 41 54 44 57 42 58 0.68 Lactococcus bacteriophage putative transcription regulator Phage_Treg PF04761.12 57 AAFJ01000010_00075 - 285 0.085 13.0 1.7 2 3 0.17 1.5e+03 -0.7 0.1 18 26 126 134 111 146 0.70 Lactococcus bacteriophage putative transcription regulator Phage_Treg PF04761.12 57 AAFJ01000010_00075 - 285 0.085 13.0 1.7 3 3 3.7e-05 0.33 11.1 0.0 8 48 165 200 160 208 0.77 Lactococcus bacteriophage putative transcription regulator AAA_25 PF13481.6 194 AAFJ01000010_00076 - 237 1.7e-18 66.9 0.0 1 1 8.6e-22 2.2e-18 66.5 0.0 31 193 28 183 9 184 0.86 AAA domain PhoH PF02562.16 205 AAFJ01000010_00076 - 237 0.00097 18.6 0.0 1 1 6.8e-07 0.0017 17.8 0.0 18 52 29 63 12 66 0.86 PhoH-like protein DnaB_C PF03796.15 255 AAFJ01000010_00076 - 237 0.0021 17.5 0.0 1 1 1.1e-06 0.0027 17.1 0.0 15 109 26 116 15 157 0.77 DnaB-like helicase C terminal domain ATPase PF06745.13 231 AAFJ01000010_00076 - 237 0.041 13.2 0.0 1 1 1.9e-05 0.049 13.0 0.0 16 76 27 88 19 215 0.67 KaiC IstB_IS21 PF01695.17 178 AAFJ01000010_00076 - 237 0.045 13.5 0.0 1 2 5.1e-05 0.13 12.0 0.0 30 79 11 64 3 93 0.73 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 AAFJ01000010_00076 - 237 0.045 13.5 0.0 2 2 1.2 3e+03 -2.2 0.0 101 117 125 141 117 169 0.63 IstB-like ATP binding protein NACHT PF05729.12 166 AAFJ01000010_00076 - 237 0.17 11.8 0.0 1 2 0.00017 0.45 10.4 0.0 9 74 39 98 32 181 0.77 NACHT domain NACHT PF05729.12 166 AAFJ01000010_00076 - 237 0.17 11.8 0.0 2 2 0.59 1.5e+03 -1.1 0.0 18 44 156 181 153 192 0.79 NACHT domain ResIII PF04851.15 171 AAFJ01000010_00076 - 237 0.23 11.4 2.5 1 1 0.00047 1.2 9.1 2.4 22 66 28 81 5 179 0.73 Type III restriction enzyme, res subunit HTH_3 PF01381.22 55 AAFJ01000010_00077 - 117 1.2e-06 28.5 0.0 1 1 5.2e-10 1.9e-06 27.8 0.0 1 46 10 55 10 60 0.94 Helix-turn-helix HTH_19 PF12844.7 65 AAFJ01000010_00077 - 117 1.2e-05 25.2 0.7 1 2 4.6e-09 1.7e-05 24.8 0.0 2 63 8 69 7 71 0.90 Helix-turn-helix domain HTH_19 PF12844.7 65 AAFJ01000010_00077 - 117 1.2e-05 25.2 0.7 2 2 4.3 1.5e+04 -3.9 0.1 3 8 107 112 105 113 0.62 Helix-turn-helix domain TACC_C PF05010.14 201 AAFJ01000010_00077 - 117 0.013 15.2 0.1 1 1 4.5e-06 0.016 15.0 0.1 13 104 13 114 4 117 0.73 Transforming acidic coiled-coil-containing protein (TACC), C-terminal T3SchapCesA PF11439.8 95 AAFJ01000010_00077 - 117 0.11 12.7 0.4 1 2 0.28 1e+03 -0.1 0.0 16 60 12 33 4 45 0.53 Type III secretion system filament chaperone CesA T3SchapCesA PF11439.8 95 AAFJ01000010_00077 - 117 0.11 12.7 0.4 2 2 0.00012 0.43 10.8 0.1 21 56 47 82 40 114 0.80 Type III secretion system filament chaperone CesA HTH_31 PF13560.6 64 AAFJ01000010_00077 - 117 0.13 12.6 0.0 1 1 6.2e-05 0.22 11.9 0.0 10 46 14 49 10 55 0.83 Helix-turn-helix domain Toprim_3 PF13362.6 95 AAFJ01000010_00078 - 376 5.2e-09 36.3 0.0 1 1 9.2e-13 8.2e-09 35.7 0.0 3 94 264 365 262 366 0.83 Toprim domain Toprim_4 PF13662.6 89 AAFJ01000010_00078 - 376 0.017 15.6 0.1 1 1 3.9e-06 0.035 14.6 0.1 2 80 262 336 261 341 0.89 Toprim domain AAA_25 PF13481.6 194 AAFJ01000010_00079 - 597 1e-15 57.8 0.0 1 1 6.8e-19 2e-15 56.9 0.0 30 193 30 175 18 176 0.85 AAA domain DnaB_C PF03796.15 255 AAFJ01000010_00079 - 597 0.0004 19.8 0.0 1 2 1.4e-06 0.0041 16.5 0.0 15 109 29 128 21 136 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 AAFJ01000010_00079 - 597 0.0004 19.8 0.0 2 2 0.0086 26 4.0 0.0 111 183 102 176 90 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 AAFJ01000010_00079 - 597 0.0014 18.3 0.0 1 2 6.2e-06 0.018 14.7 0.0 46 87 32 73 19 86 0.87 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 AAFJ01000010_00079 - 597 0.0014 18.3 0.0 2 2 0.18 5.3e+02 0.2 0.0 97 118 109 130 97 169 0.73 IstB-like ATP binding protein ATPase PF06745.13 231 AAFJ01000010_00079 - 597 0.013 14.8 0.0 1 2 1.6e-05 0.049 13.0 0.0 16 71 30 84 24 214 0.87 KaiC ATPase PF06745.13 231 AAFJ01000010_00079 - 597 0.013 14.8 0.0 2 2 1 3e+03 -2.7 0.0 137 160 329 352 322 356 0.83 KaiC AAA PF00004.29 132 AAFJ01000010_00079 - 597 0.07 13.6 0.1 1 2 0.0003 0.91 10.0 0.0 2 105 37 166 36 177 0.64 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 AAFJ01000010_00079 - 597 0.07 13.6 0.1 2 2 0.36 1.1e+03 0.0 0.0 55 74 417 434 380 456 0.77 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 AAFJ01000010_00079 - 597 0.34 11.0 3.4 1 1 0.00088 2.6 8.1 3.4 1 29 35 63 35 540 0.91 CobQ/CobB/MinD/ParA nucleotide binding domain SseC PF04888.12 317 AAFJ01000010_00080 - 136 0.0012 18.6 1.4 1 2 3.3e-07 0.0012 18.6 1.4 27 77 8 57 6 60 0.94 Secretion system effector C (SseC) like family SseC PF04888.12 317 AAFJ01000010_00080 - 136 0.0012 18.6 1.4 2 2 2.1 7.5e+03 -3.8 4.1 58 70 95 107 93 110 0.75 Secretion system effector C (SseC) like family Leu_Phe_trans PF03588.14 169 AAFJ01000010_00080 - 136 0.034 13.7 0.1 1 1 1.3e-05 0.048 13.2 0.1 76 120 5 48 1 54 0.91 Leucyl/phenylalanyl-tRNA protein transferase T2SSF PF00482.23 125 AAFJ01000010_00080 - 136 0.18 11.8 0.1 1 2 5e-05 0.18 11.8 0.1 85 123 17 55 13 57 0.88 Type II secretion system (T2SS), protein F T2SSF PF00482.23 125 AAFJ01000010_00080 - 136 0.18 11.8 0.1 2 2 0.27 9.9e+02 -0.3 1.5 106 121 99 114 86 116 0.56 Type II secretion system (T2SS), protein F DUF3185 PF11381.8 59 AAFJ01000010_00080 - 136 0.2 11.7 9.2 1 3 0.0004 1.4 9.0 0.0 37 57 26 46 9 56 0.86 Protein of unknown function (DUF3185) DUF3185 PF11381.8 59 AAFJ01000010_00080 - 136 0.2 11.7 9.2 2 3 0.077 2.8e+02 1.6 1.2 1 10 98 107 98 112 0.83 Protein of unknown function (DUF3185) DUF3185 PF11381.8 59 AAFJ01000010_00080 - 136 0.2 11.7 9.2 3 3 0.011 40 4.3 1.1 8 19 123 134 121 136 0.89 Protein of unknown function (DUF3185) DUF2207 PF09972.9 492 AAFJ01000010_00080 - 136 5.6 5.6 16.6 1 2 2.1e-05 0.074 11.8 0.8 360 418 7 69 1 87 0.43 Predicted membrane protein (DUF2207) DUF2207 PF09972.9 492 AAFJ01000010_00080 - 136 5.6 5.6 16.6 2 2 0.13 4.7e+02 -0.7 9.2 383 420 93 130 73 135 0.50 Predicted membrane protein (DUF2207) Resolvase PF00239.21 146 AAFJ01000010_00081 - 205 9.9e-36 123.0 0.2 1 1 2.4e-39 1.4e-35 122.5 0.2 2 145 3 144 2 145 0.94 Resolvase, N terminal domain Mga PF05043.13 87 AAFJ01000010_00081 - 205 0.012 16.1 2.2 1 2 2.5e-05 0.15 12.7 0.6 16 65 17 66 6 75 0.86 Mga helix-turn-helix domain Mga PF05043.13 87 AAFJ01000010_00081 - 205 0.012 16.1 2.2 2 2 0.051 3e+02 2.1 0.0 43 83 152 191 150 194 0.82 Mga helix-turn-helix domain DUF2790 PF10976.8 78 AAFJ01000010_00081 - 205 0.14 12.2 0.1 1 1 4.1e-05 0.24 11.4 0.1 12 48 10 45 1 49 0.76 Protein of unknown function (DUF2790) TrbC PF04956.13 99 AAFJ01000010_00082 - 87 4.8e-15 55.6 8.1 1 1 3.1e-19 5.6e-15 55.4 8.1 19 99 5 85 2 85 0.95 TrbC/VIRB2 family CagE_TrbE_VirB PF03135.14 206 AAFJ01000010_00083 - 923 2.5e-43 148.6 0.5 1 1 6.9e-47 6.2e-43 147.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 AAFJ01000010_00083 - 923 1.2e-19 70.3 2.0 1 1 2.4e-23 2.1e-19 69.5 2.0 3 83 4 84 2 85 0.95 Type IV secretory pathway, VirB3-like protein Phage_pRha PF09669.10 88 AAFJ01000010_00084 - 206 2.7e-29 101.5 0.0 1 1 2.5e-33 4.5e-29 100.8 0.0 2 88 26 124 25 124 0.89 Phage regulatory protein Rha (Phage_pRha) T4SS PF07996.11 197 AAFJ01000010_00085 - 245 2.3e-23 83.6 16.9 1 1 1.1e-26 2.8e-23 83.4 16.9 1 195 21 225 21 227 0.91 Type IV secretion system proteins CHASE4 PF05228.13 137 AAFJ01000010_00085 - 245 0.05 13.8 5.7 1 3 0.0091 23 5.2 0.6 4 36 36 68 35 71 0.89 CHASE4 domain CHASE4 PF05228.13 137 AAFJ01000010_00085 - 245 0.05 13.8 5.7 2 3 0.0004 1 9.6 0.2 2 58 75 138 74 175 0.79 CHASE4 domain CHASE4 PF05228.13 137 AAFJ01000010_00085 - 245 0.05 13.8 5.7 3 3 0.37 9.4e+02 -0.0 0.0 92 122 147 178 138 192 0.86 CHASE4 domain KMP11 PF03037.16 90 AAFJ01000010_00085 - 245 0.074 13.8 2.3 1 4 0.00012 0.31 11.8 0.0 8 54 18 64 12 92 0.85 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 AAFJ01000010_00085 - 245 0.074 13.8 2.3 2 4 0.74 1.9e+03 -0.3 0.1 24 49 100 123 81 145 0.57 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 AAFJ01000010_00085 - 245 0.074 13.8 2.3 3 4 0.95 2.4e+03 -0.6 0.2 51 51 167 167 115 209 0.59 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 AAFJ01000010_00085 - 245 0.074 13.8 2.3 4 4 1 2.6e+03 -0.7 0.2 12 12 201 201 156 238 0.59 Kinetoplastid membrane protein 11 AChE_tetra PF08674.10 37 AAFJ01000010_00085 - 245 0.099 12.4 1.2 1 2 0.00019 0.5 10.1 0.1 6 29 43 66 41 72 0.92 Acetylcholinesterase tetramerisation domain AChE_tetra PF08674.10 37 AAFJ01000010_00085 - 245 0.099 12.4 1.2 2 2 0.19 4.9e+02 0.5 0.1 15 35 123 143 121 145 0.88 Acetylcholinesterase tetramerisation domain zf-RING_6 PF14835.6 65 AAFJ01000010_00085 - 245 0.12 12.2 0.1 1 2 0.00024 0.61 10.0 0.0 35 53 14 32 7 41 0.83 zf-RING of BARD1-type protein zf-RING_6 PF14835.6 65 AAFJ01000010_00085 - 245 0.12 12.2 0.1 2 2 0.69 1.8e+03 -1.1 0.0 9 24 130 145 124 149 0.80 zf-RING of BARD1-type protein Med8 PF10232.9 232 AAFJ01000010_00085 - 245 0.22 11.1 9.0 1 2 0.41 1.1e+03 -1.0 0.2 139 159 46 66 24 101 0.52 Mediator of RNA polymerase II transcription complex subunit 8 Med8 PF10232.9 232 AAFJ01000010_00085 - 245 0.22 11.1 9.0 2 2 8.5e-06 0.022 14.4 3.9 123 205 146 228 143 244 0.81 Mediator of RNA polymerase II transcription complex subunit 8 PCRF PF03462.18 193 AAFJ01000010_00085 - 245 0.25 11.2 11.7 1 2 0.001 2.7 7.8 0.4 12 82 29 99 22 123 0.54 PCRF domain PCRF PF03462.18 193 AAFJ01000010_00085 - 245 0.25 11.2 11.7 2 2 0.0015 3.9 7.3 5.3 20 91 153 231 136 239 0.55 PCRF domain TrbL PF04610.14 215 AAFJ01000010_00086 - 331 5.9e-33 114.4 25.5 1 1 1.8e-36 8.1e-33 114.0 25.5 1 212 40 245 40 279 0.91 TrbL/VirB6 plasmid conjugal transfer protein DUF2070 PF09843.9 564 AAFJ01000010_00086 - 331 0.31 9.3 16.7 1 1 0.00011 0.47 8.7 16.7 20 125 135 248 117 263 0.79 Predicted membrane protein (DUF2070) AIM3 PF17096.5 88 AAFJ01000010_00086 - 331 5.4 8.0 7.0 1 1 0.0021 9.6 7.2 7.0 7 35 281 309 278 312 0.92 Altered inheritance of mitochondria protein 3 DUF412 PF04217.13 141 AAFJ01000010_00086 - 331 6.5 6.7 10.8 1 3 0.021 95 2.9 0.0 60 90 30 60 12 71 0.78 Protein of unknown function, DUF412 DUF412 PF04217.13 141 AAFJ01000010_00086 - 331 6.5 6.7 10.8 2 3 0.0045 20 5.1 6.7 38 101 137 197 118 205 0.78 Protein of unknown function, DUF412 DUF412 PF04217.13 141 AAFJ01000010_00086 - 331 6.5 6.7 10.8 3 3 1.2 5.5e+03 -2.8 0.0 59 79 227 251 204 252 0.61 Protein of unknown function, DUF412 VirB8 PF04335.13 214 AAFJ01000010_00089 - 219 8.4e-50 169.6 0.1 1 1 1.1e-53 1e-49 169.3 0.1 5 214 10 216 7 216 0.92 VirB8 protein Wzz PF02706.15 92 AAFJ01000010_00089 - 219 2.4 8.5 6.7 1 2 0.00031 2.8 8.3 3.2 8 51 17 60 11 124 0.63 Chain length determinant protein Wzz PF02706.15 92 AAFJ01000010_00089 - 219 2.4 8.5 6.7 2 2 0.085 7.6e+02 0.5 0.1 42 64 159 186 158 203 0.62 Chain length determinant protein CagX PF03524.15 211 AAFJ01000010_00090 - 316 2.3e-53 181.1 0.8 1 1 2.5e-57 4.6e-53 180.1 0.8 2 211 29 270 28 270 0.92 Conjugal transfer protein TrbI PF03743.14 187 AAFJ01000010_00091 - 382 1.3e-46 158.8 0.1 1 2 0.39 3.5e+03 -2.4 0.3 119 154 120 160 111 164 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 AAFJ01000010_00091 - 382 1.3e-46 158.8 0.1 2 2 1.5e-50 1.3e-46 158.8 0.1 1 187 191 372 191 372 0.98 Bacterial conjugation TrbI-like protein DUF5345 PF17280.2 77 AAFJ01000010_00091 - 382 0.17 11.8 0.2 1 1 3.8e-05 0.34 10.9 0.2 31 61 12 42 5 44 0.90 Family of unknown function (DUF5345) MORN_2 PF07661.13 22 AAFJ01000010_00092 - 194 0.39 11.1 2.9 1 2 0.051 4.5e+02 1.7 0.1 8 22 138 152 134 152 0.81 MORN repeat variant MORN_2 PF07661.13 22 AAFJ01000010_00092 - 194 0.39 11.1 2.9 2 2 0.00031 2.8 8.4 0.6 5 17 155 167 154 169 0.89 MORN repeat variant Ribosomal_S13 PF00416.22 128 AAFJ01000010_00092 - 194 0.83 10.1 4.2 1 2 0.002 17 5.8 0.1 47 91 22 66 8 83 0.78 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 AAFJ01000010_00092 - 194 0.83 10.1 4.2 2 2 0.0036 32 4.9 1.4 37 72 155 190 146 194 0.80 Ribosomal protein S13/S18 T2SSE PF00437.20 273 AAFJ01000010_00093 - 329 5.1e-54 183.2 0.0 1 1 1.2e-56 6.4e-54 182.8 0.0 6 269 14 311 9 314 0.94 Type II/IV secretion system protein AAA_22 PF13401.6 137 AAFJ01000010_00093 - 329 4.9e-05 23.6 0.0 1 1 1.8e-07 9.4e-05 22.7 0.0 7 57 162 222 159 251 0.82 AAA domain ABC_tran PF00005.27 137 AAFJ01000010_00093 - 329 0.00012 22.6 0.0 1 1 5.5e-07 0.00029 21.4 0.0 8 51 157 201 150 229 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 AAFJ01000010_00093 - 329 0.00021 20.7 0.0 1 1 6.5e-07 0.00034 20.0 0.0 28 60 146 181 125 183 0.79 FtsK/SpoIIIE family AAA_7 PF12775.7 181 AAFJ01000010_00093 - 329 0.00062 19.3 0.0 1 1 2e-06 0.0011 18.6 0.0 19 58 146 185 130 196 0.85 P-loop containing dynein motor region AAA_23 PF13476.6 200 AAFJ01000010_00093 - 329 0.0028 18.2 1.3 1 2 4.3 2.3e+03 -1.1 0.2 154 156 124 126 42 151 0.51 AAA domain AAA_23 PF13476.6 200 AAFJ01000010_00093 - 329 0.0028 18.2 1.3 2 2 5.3e-06 0.0028 18.2 1.3 5 38 147 179 145 182 0.84 AAA domain TsaE PF02367.17 125 AAFJ01000010_00093 - 329 0.003 17.5 0.0 1 1 1.2e-05 0.0064 16.5 0.0 11 45 150 186 142 194 0.77 Threonylcarbamoyl adenosine biosynthesis protein TsaE Pox_A32 PF04665.12 242 AAFJ01000010_00093 - 329 0.003 17.0 0.0 1 1 9.2e-06 0.0048 16.4 0.0 15 36 162 183 145 209 0.85 Poxvirus A32 protein AAA_15 PF13175.6 369 AAFJ01000010_00093 - 329 0.0035 17.1 2.5 1 2 0.21 1.1e+02 2.3 1.2 184 217 74 139 2 147 0.50 AAA ATPase domain AAA_15 PF13175.6 369 AAFJ01000010_00093 - 329 0.0035 17.1 2.5 2 2 6.7e-06 0.0035 17.1 2.5 9 54 147 191 145 224 0.78 AAA ATPase domain AAA_24 PF13479.6 197 AAFJ01000010_00093 - 329 0.0041 16.9 0.0 1 1 1.3e-05 0.0069 16.1 0.0 3 32 161 187 160 229 0.74 AAA domain Septin PF00735.18 281 AAFJ01000010_00093 - 329 0.0043 16.4 0.0 1 1 1.4e-05 0.0072 15.6 0.0 5 33 161 189 157 209 0.78 Septin RNA_helicase PF00910.22 107 AAFJ01000010_00093 - 329 0.012 16.0 0.0 1 1 8.1e-05 0.043 14.2 0.0 1 21 163 183 163 223 0.85 RNA helicase ATPase_2 PF01637.18 233 AAFJ01000010_00093 - 329 0.013 15.4 0.0 1 1 3.9e-05 0.021 14.8 0.0 23 82 163 226 150 281 0.86 ATPase domain predominantly from Archaea NACHT PF05729.12 166 AAFJ01000010_00093 - 329 0.015 15.2 0.0 1 1 4.8e-05 0.025 14.5 0.0 3 22 163 182 161 185 0.91 NACHT domain AAA_29 PF13555.6 61 AAFJ01000010_00093 - 329 0.015 15.0 0.0 1 1 6.6e-05 0.035 13.9 0.0 8 39 148 177 139 183 0.74 P-loop containing region of AAA domain DUF87 PF01935.17 227 AAFJ01000010_00093 - 329 0.015 15.4 1.0 1 2 2.6 1.4e+03 -0.8 0.1 152 187 105 138 37 158 0.65 Helicase HerA, central domain DUF87 PF01935.17 227 AAFJ01000010_00093 - 329 0.015 15.4 1.0 2 2 5.6e-05 0.03 14.4 0.2 24 45 161 182 138 193 0.82 Helicase HerA, central domain DUF815 PF05673.13 250 AAFJ01000010_00093 - 329 0.021 14.0 0.0 1 1 5.9e-05 0.031 13.4 0.0 11 76 117 183 107 209 0.79 Protein of unknown function (DUF815) DEAD PF00270.29 176 AAFJ01000010_00093 - 329 0.021 14.6 0.0 1 1 5.7e-05 0.03 14.1 0.0 11 32 157 177 144 283 0.83 DEAD/DEAH box helicase Mg_chelatase PF01078.21 207 AAFJ01000010_00093 - 329 0.023 14.1 0.0 1 2 2 1.1e+03 -1.2 0.0 40 59 84 103 81 125 0.82 Magnesium chelatase, subunit ChlI Mg_chelatase PF01078.21 207 AAFJ01000010_00093 - 329 0.023 14.1 0.0 2 2 0.0002 0.1 11.9 0.0 7 49 145 187 139 227 0.82 Magnesium chelatase, subunit ChlI ATP_bind_1 PF03029.17 241 AAFJ01000010_00093 - 329 0.027 14.3 0.0 1 1 9.4e-05 0.049 13.4 0.0 1 23 165 187 165 193 0.86 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 167 AAFJ01000010_00093 - 329 0.045 13.7 0.0 1 1 0.00014 0.072 13.0 0.0 64 121 127 182 110 199 0.67 RsgA GTPase TrwB_AAD_bind PF10412.9 386 AAFJ01000010_00093 - 329 0.046 12.6 0.0 1 1 0.00015 0.079 11.8 0.0 17 45 162 190 156 221 0.78 Type IV secretion-system coupling protein DNA-binding domain Dynamin_N PF00350.23 168 AAFJ01000010_00093 - 329 0.051 13.6 0.0 1 2 1.2 6.2e+02 0.3 0.0 21 53 84 115 25 156 0.64 Dynamin family Dynamin_N PF00350.23 168 AAFJ01000010_00093 - 329 0.051 13.6 0.0 2 2 0.00075 0.4 10.7 0.0 1 32 163 192 163 221 0.88 Dynamin family ResIII PF04851.15 171 AAFJ01000010_00093 - 329 0.055 13.5 0.1 1 1 0.00023 0.12 12.4 0.1 5 46 142 182 137 224 0.87 Type III restriction enzyme, res subunit SMC_N PF02463.19 220 AAFJ01000010_00093 - 329 0.063 12.7 0.1 1 1 0.00022 0.12 11.8 0.1 7 44 146 180 137 206 0.76 RecF/RecN/SMC N terminal domain PduV-EutP PF10662.9 143 AAFJ01000010_00093 - 329 0.07 12.9 0.0 1 2 0.0013 0.7 9.6 0.0 2 22 161 181 160 204 0.88 Ethanolamine utilisation - propanediol utilisation PduV-EutP PF10662.9 143 AAFJ01000010_00093 - 329 0.07 12.9 0.0 2 2 0.84 4.4e+02 0.5 0.0 76 109 288 321 275 326 0.80 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 130 AAFJ01000010_00093 - 329 0.073 13.6 0.0 1 1 0.00027 0.14 12.7 0.0 1 93 163 278 163 292 0.56 AAA domain PRK PF00485.18 197 AAFJ01000010_00093 - 329 0.089 12.5 0.0 1 1 0.00031 0.16 11.7 0.0 2 37 163 197 162 224 0.68 Phosphoribulokinase / Uridine kinase family MobB PF03205.14 133 AAFJ01000010_00093 - 329 0.09 12.7 0.0 1 1 0.00036 0.19 11.6 0.0 2 22 163 183 162 199 0.88 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.6 131 AAFJ01000010_00093 - 329 0.091 12.8 0.3 1 1 0.0004 0.21 11.6 0.0 3 50 161 208 160 241 0.76 AAA domain GvpD PF07088.11 484 AAFJ01000010_00093 - 329 0.093 11.3 0.0 1 1 0.00022 0.12 11.0 0.0 8 43 158 193 150 260 0.74 GvpD gas vesicle protein Sigma54_activat PF00158.26 168 AAFJ01000010_00093 - 329 0.1 12.3 0.0 1 1 0.00045 0.24 11.1 0.0 13 43 151 181 142 200 0.81 Sigma-54 interaction domain Roc PF08477.13 120 AAFJ01000010_00093 - 329 0.12 12.6 0.1 1 1 0.00066 0.35 11.1 0.0 2 21 163 182 162 210 0.81 Ras of Complex, Roc, domain of DAPkinase AAA_33 PF13671.6 143 AAFJ01000010_00093 - 329 0.13 12.5 0.0 1 1 0.00039 0.21 11.8 0.0 2 20 163 181 163 240 0.90 AAA domain YscJ_FliF PF01514.17 194 AAFJ01000010_00094 - 240 0.019 14.7 2.6 1 2 0.00021 0.31 10.7 0.1 26 64 47 85 39 109 0.85 Secretory protein of YscJ/FliF family YscJ_FliF PF01514.17 194 AAFJ01000010_00094 - 240 0.019 14.7 2.6 2 2 0.03 44 3.6 0.3 155 179 203 227 189 235 0.84 Secretory protein of YscJ/FliF family Njmu-R1 PF15053.6 353 AAFJ01000010_00094 - 240 0.028 13.5 1.6 1 1 3.4e-05 0.051 12.7 1.6 121 227 3 109 1 128 0.78 Mjmu-R1-like protein family FtsQ PF03799.15 117 AAFJ01000010_00094 - 240 0.18 12.7 0.8 1 3 5.6 8.4e+03 -2.4 0.0 43 47 37 41 6 67 0.60 Cell division protein FtsQ FtsQ PF03799.15 117 AAFJ01000010_00094 - 240 0.18 12.7 0.8 2 3 0.0012 1.8 9.4 0.0 58 102 115 158 75 170 0.75 Cell division protein FtsQ FtsQ PF03799.15 117 AAFJ01000010_00094 - 240 0.18 12.7 0.8 3 3 0.47 7e+02 1.1 0.0 38 63 209 233 184 238 0.72 Cell division protein FtsQ Halogen_Hydrol PF10112.9 191 AAFJ01000010_00094 - 240 1.1 9.2 6.9 1 2 0.0028 4.3 7.3 0.8 66 98 20 52 3 76 0.81 5-bromo-4-chloroindolyl phosphate hydrolysis protein Halogen_Hydrol PF10112.9 191 AAFJ01000010_00094 - 240 1.1 9.2 6.9 2 2 0.012 17 5.3 0.7 48 79 196 227 141 233 0.86 5-bromo-4-chloroindolyl phosphate hydrolysis protein Flagellin_N PF00669.20 139 AAFJ01000010_00094 - 240 2.1 8.5 7.4 1 2 0.0012 1.9 8.6 0.4 52 104 8 57 3 94 0.83 Bacterial flagellin N-terminal helical region Flagellin_N PF00669.20 139 AAFJ01000010_00094 - 240 2.1 8.5 7.4 2 2 0.076 1.1e+02 2.8 1.7 83 120 188 226 185 233 0.82 Bacterial flagellin N-terminal helical region SlyX PF04102.12 67 AAFJ01000010_00094 - 240 2.2 9.0 7.3 1 2 0.0031 4.6 7.9 0.8 7 53 5 51 4 64 0.78 SlyX SlyX PF04102.12 67 AAFJ01000010_00094 - 240 2.2 9.0 7.3 2 2 0.038 57 4.4 0.2 30 50 208 228 201 235 0.77 SlyX DUF1664 PF07889.12 124 AAFJ01000010_00094 - 240 2.4 8.2 10.7 1 3 0.0026 3.9 7.5 0.7 71 111 6 46 3 54 0.79 Protein of unknown function (DUF1664) DUF1664 PF07889.12 124 AAFJ01000010_00094 - 240 2.4 8.2 10.7 2 3 1.3 1.9e+03 -1.2 0.1 80 103 65 88 47 94 0.59 Protein of unknown function (DUF1664) DUF1664 PF07889.12 124 AAFJ01000010_00094 - 240 2.4 8.2 10.7 3 3 0.0072 11 6.1 1.2 48 75 209 236 191 240 0.68 Protein of unknown function (DUF1664) FlaC_arch PF05377.11 55 AAFJ01000010_00094 - 240 5.7 7.4 10.3 1 3 0.0027 4 7.9 0.5 1 35 9 43 5 47 0.90 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 AAFJ01000010_00094 - 240 5.7 7.4 10.3 2 3 2.8 4.2e+03 -1.8 0.1 19 39 70 90 55 94 0.61 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 AAFJ01000010_00094 - 240 5.7 7.4 10.3 3 3 0.022 33 5.0 0.6 17 39 209 231 198 236 0.75 Flagella accessory protein C (FlaC) HrpB7 PF09486.10 157 AAFJ01000010_00094 - 240 5.9 7.3 7.8 1 3 0.0011 1.6 9.1 0.6 97 136 5 44 2 54 0.82 Bacterial type III secretion protein (HrpB7) HrpB7 PF09486.10 157 AAFJ01000010_00094 - 240 5.9 7.3 7.8 2 3 6.9 1e+04 -3.3 0.1 109 115 154 160 143 170 0.40 Bacterial type III secretion protein (HrpB7) HrpB7 PF09486.10 157 AAFJ01000010_00094 - 240 5.9 7.3 7.8 3 3 0.13 2e+02 2.3 0.2 85 107 208 230 190 235 0.65 Bacterial type III secretion protein (HrpB7) Vac_Fusion PF02346.16 56 AAFJ01000010_00094 - 240 6 6.6 7.8 1 3 0.00083 1.2 8.8 0.8 3 36 4 37 2 43 0.91 Chordopoxvirus multifunctional envelope protein A27 Vac_Fusion PF02346.16 56 AAFJ01000010_00094 - 240 6 6.6 7.8 2 3 0.23 3.4e+02 0.9 0.1 25 33 146 154 141 169 0.53 Chordopoxvirus multifunctional envelope protein A27 Vac_Fusion PF02346.16 56 AAFJ01000010_00094 - 240 6 6.6 7.8 3 3 1.9 2.9e+03 -2.0 0.1 28 28 230 230 206 240 0.51 Chordopoxvirus multifunctional envelope protein A27 FapA PF03961.13 454 AAFJ01000010_00094 - 240 6.9 5.2 21.5 1 2 7.7e-05 0.11 11.0 9.9 333 412 11 95 2 154 0.82 Flagellar Assembly Protein A FapA PF03961.13 454 AAFJ01000010_00094 - 240 6.9 5.2 21.5 2 2 0.39 5.8e+02 -1.2 5.5 336 393 190 228 128 240 0.41 Flagellar Assembly Protein A BST2 PF16716.5 91 AAFJ01000010_00094 - 240 6.9 7.3 17.4 1 3 0.00093 1.4 9.6 3.4 12 73 3 63 1 81 0.81 Bone marrow stromal antigen 2 BST2 PF16716.5 91 AAFJ01000010_00094 - 240 6.9 7.3 17.4 2 3 4.3 6.5e+03 -2.2 0.1 48 62 152 164 141 171 0.44 Bone marrow stromal antigen 2 BST2 PF16716.5 91 AAFJ01000010_00094 - 240 6.9 7.3 17.4 3 3 0.009 13 6.4 2.3 54 84 197 227 184 233 0.58 Bone marrow stromal antigen 2 T4SS-DNA_transf PF02534.14 469 AAFJ01000010_00095 - 606 1.3e-109 367.1 0.0 1 1 3.9e-113 1.8e-109 366.7 0.0 2 461 93 572 82 578 0.86 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 AAFJ01000010_00095 - 606 6.2e-27 94.1 0.0 1 1 2.4e-30 1.1e-26 93.3 0.0 2 125 414 535 413 536 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 AAFJ01000010_00095 - 606 1.4e-18 67.0 0.0 1 2 1.3e-06 0.0058 15.6 0.0 44 127 158 253 132 272 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 AAFJ01000010_00095 - 606 1.4e-18 67.0 0.0 2 2 7.3e-17 3.3e-13 49.3 0.0 158 369 322 538 301 550 0.78 Type IV secretion-system coupling protein DNA-binding domain BRI3BP PF14965.6 180 AAFJ01000010_00095 - 606 0.22 11.0 2.3 1 2 5.9e-05 0.26 10.8 1.2 72 144 6 77 2 100 0.79 Negative regulator of p53/TP53 BRI3BP PF14965.6 180 AAFJ01000010_00095 - 606 0.22 11.0 2.3 2 2 1.3 6e+03 -3.4 0.0 8 27 490 509 488 520 0.81 Negative regulator of p53/TP53 Cag12 PF13117.6 97 AAFJ01000010_00096 - 136 1.1e-16 61.2 0.1 1 1 2.4e-20 1.4e-16 60.7 0.1 6 94 29 115 25 118 0.92 Cag pathogenicity island protein Cag12 LPAM_2 PF13627.6 23 AAFJ01000010_00096 - 136 0.027 14.3 3.2 1 1 7.4e-06 0.044 13.6 3.2 2 19 7 24 6 24 0.90 Prokaryotic lipoprotein-attachment site DUF5061 PF16587.5 103 AAFJ01000010_00096 - 136 0.15 12.2 0.1 1 1 3.1e-05 0.19 11.8 0.1 2 34 8 40 7 91 0.82 17 kDa common-antigen outer membrane protein TrbM PF07424.11 156 AAFJ01000010_00097 - 197 6.3e-39 133.4 1.3 1 1 4.5e-43 8e-39 133.1 1.3 2 148 23 181 22 190 0.87 TrbM Latarcin PF10279.9 81 AAFJ01000010_00098 - 296 0.016 15.6 1.6 1 1 0.00029 0.66 10.4 1.6 22 76 56 184 14 189 0.78 Latarcin precursor Lipase_GDSL PF00657.22 200 AAFJ01000010_00098 - 296 0.033 14.2 1.1 1 1 3e-05 0.067 13.2 0.9 48 131 27 170 15 219 0.75 GDSL-like Lipase/Acylhydrolase T3SS_basalb_I PF17001.5 96 AAFJ01000010_00098 - 296 0.078 13.6 4.2 1 2 0.00077 1.7 9.3 0.5 3 62 20 91 18 107 0.70 Type III secretion basal body protein I, YscI, HrpB, PscI T3SS_basalb_I PF17001.5 96 AAFJ01000010_00098 - 296 0.078 13.6 4.2 2 2 0.019 44 4.8 0.1 2 43 158 208 157 219 0.55 Type III secretion basal body protein I, YscI, HrpB, PscI Cor1 PF04803.12 132 AAFJ01000010_00098 - 296 0.15 12.3 22.3 1 3 0.0051 11 6.2 4.9 5 53 3 51 1 86 0.76 Cor1/Xlr/Xmr conserved region Cor1 PF04803.12 132 AAFJ01000010_00098 - 296 0.15 12.3 22.3 2 3 6.9e-05 0.15 12.2 6.2 45 124 97 179 82 182 0.83 Cor1/Xlr/Xmr conserved region Cor1 PF04803.12 132 AAFJ01000010_00098 - 296 0.15 12.3 22.3 3 3 0.095 2.1e+02 2.1 0.5 7 40 178 211 172 218 0.61 Cor1/Xlr/Xmr conserved region DUF1451 PF07295.11 147 AAFJ01000010_00098 - 296 0.25 11.3 8.8 1 3 0.05 1.1e+02 2.8 0.4 35 89 22 76 2 88 0.75 Zinc-ribbon containing domain DUF1451 PF07295.11 147 AAFJ01000010_00098 - 296 0.25 11.3 8.8 2 3 0.29 6.4e+02 0.3 0.1 9 45 62 96 56 121 0.67 Zinc-ribbon containing domain DUF1451 PF07295.11 147 AAFJ01000010_00098 - 296 0.25 11.3 8.8 3 3 8.8e-05 0.2 11.7 2.5 6 100 118 205 111 215 0.87 Zinc-ribbon containing domain TipAS PF07739.13 117 AAFJ01000010_00098 - 296 0.36 11.4 6.4 1 3 0.24 5.3e+02 1.2 0.7 15 44 27 56 13 88 0.57 TipAS antibiotic-recognition domain TipAS PF07739.13 117 AAFJ01000010_00098 - 296 0.36 11.4 6.4 2 3 0.012 27 5.4 0.1 26 75 89 138 56 149 0.68 TipAS antibiotic-recognition domain TipAS PF07739.13 117 AAFJ01000010_00098 - 296 0.36 11.4 6.4 3 3 0.004 9 6.9 0.2 19 71 156 208 147 224 0.85 TipAS antibiotic-recognition domain Exonuc_VII_L PF02601.15 304 AAFJ01000010_00098 - 296 0.37 10.3 10.9 1 2 0.0064 14 5.1 3.2 159 242 15 77 1 119 0.29 Exonuclease VII, large subunit Exonuc_VII_L PF02601.15 304 AAFJ01000010_00098 - 296 0.37 10.3 10.9 2 2 0.00029 0.65 9.5 2.7 144 240 105 204 96 279 0.65 Exonuclease VII, large subunit OmpH PF03938.14 138 AAFJ01000010_00098 - 296 2.8 8.3 16.8 1 3 0.0016 3.5 8.0 3.1 23 103 15 108 3 115 0.72 Outer membrane protein (OmpH-like) OmpH PF03938.14 138 AAFJ01000010_00098 - 296 2.8 8.3 16.8 2 3 0.0017 3.8 7.9 2.6 35 117 137 222 111 233 0.62 Outer membrane protein (OmpH-like) OmpH PF03938.14 138 AAFJ01000010_00098 - 296 2.8 8.3 16.8 3 3 0.84 1.9e+03 -0.9 0.1 16 32 244 260 232 288 0.54 Outer membrane protein (OmpH-like) Topoisom_bac PF01131.20 413 AAFJ01000010_00100 - 723 4.4e-96 322.4 2.6 1 1 5.3e-99 5.6e-96 322.1 2.6 3 413 154 591 152 591 0.93 DNA topoisomerase Toprim PF01751.22 103 AAFJ01000010_00100 - 723 8.4e-12 45.2 0.4 1 2 3.3e-14 3.4e-11 43.3 0.1 1 101 2 134 2 136 0.86 Toprim domain Toprim PF01751.22 103 AAFJ01000010_00100 - 723 8.4e-12 45.2 0.4 2 2 6.3 6.6e+03 -2.6 0.0 61 77 497 513 465 516 0.67 Toprim domain zf-C4_Topoisom PF01396.19 39 AAFJ01000010_00100 - 723 1.2e-07 31.3 19.1 1 2 7.7e-07 0.00081 19.1 3.8 2 27 619 645 618 656 0.88 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 AAFJ01000010_00100 - 723 1.2e-07 31.3 19.1 2 2 2.3e-06 0.0024 17.6 7.4 3 37 674 713 672 715 0.85 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 AAFJ01000010_00100 - 723 0.00043 20.5 0.2 1 2 0.0037 3.9 7.8 0.0 18 34 615 631 610 632 0.78 zinc-ribbon zinc_ribbon_9 PF14369.6 35 AAFJ01000010_00100 - 723 0.00043 20.5 0.2 2 2 0.00065 0.69 10.2 0.0 20 32 671 683 661 685 0.78 zinc-ribbon Zn_ribbon_SprT PF17283.2 38 AAFJ01000010_00100 - 723 0.014 15.3 1.1 1 2 0.43 4.6e+02 0.8 0.1 7 13 621 627 614 632 0.64 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 AAFJ01000010_00100 - 723 0.014 15.3 1.1 2 2 0.00011 0.11 12.4 0.2 4 27 672 699 669 704 0.93 SprT-like zinc ribbon domain Toprim_2 PF13155.6 90 AAFJ01000010_00100 - 723 0.036 14.5 0.3 1 2 0.00075 0.79 10.2 0.1 37 75 91 131 83 152 0.82 Toprim-like Toprim_2 PF13155.6 90 AAFJ01000010_00100 - 723 0.036 14.5 0.3 2 2 0.43 4.5e+02 1.3 0.0 33 58 488 513 448 516 0.80 Toprim-like HTH_34 PF13601.6 80 AAFJ01000010_00100 - 723 0.074 13.2 0.5 1 2 0.84 8.9e+02 0.2 0.0 44 62 465 481 456 496 0.68 Winged helix DNA-binding domain HTH_34 PF13601.6 80 AAFJ01000010_00100 - 723 0.074 13.2 0.5 2 2 0.00073 0.77 10.0 0.1 32 57 524 549 519 558 0.84 Winged helix DNA-binding domain Zn-ribbon_8 PF09723.10 40 AAFJ01000010_00100 - 723 0.077 13.1 0.7 1 2 0.033 35 4.6 0.0 18 34 609 626 603 632 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 AAFJ01000010_00100 - 723 0.077 13.1 0.7 2 2 0.011 11 6.2 0.1 5 21 672 688 665 693 0.77 Zinc ribbon domain zinc_ribbon_4 PF13717.6 36 AAFJ01000010_00100 - 723 0.11 12.4 2.3 1 2 0.017 18 5.3 0.2 2 12 618 628 618 629 0.85 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 AAFJ01000010_00100 - 723 0.11 12.4 2.3 2 2 0.01 11 6.1 0.1 4 17 674 687 672 694 0.84 zinc-ribbon domain Toprim_4 PF13662.6 89 AAFJ01000010_00100 - 723 0.12 12.8 0.1 1 2 0.00075 0.79 10.2 0.0 49 76 89 120 69 132 0.71 Toprim domain Toprim_4 PF13662.6 89 AAFJ01000010_00100 - 723 0.12 12.8 0.1 2 2 4.7 4.9e+03 -1.9 0.0 29 68 482 513 477 515 0.67 Toprim domain zf-ribbon_3 PF13248.6 26 AAFJ01000010_00100 - 723 0.18 11.3 1.0 1 2 0.012 12 5.4 0.1 2 11 618 628 617 633 0.74 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 AAFJ01000010_00100 - 723 0.18 11.3 1.0 2 2 0.038 40 3.8 0.1 1 8 671 678 671 687 0.83 zinc-ribbon domain TRAF6_Z2 PF18048.1 27 AAFJ01000010_00100 - 723 0.44 10.7 3.7 1 3 1.6 1.7e+03 -0.8 0.0 18 25 264 271 262 272 0.85 TNF receptor-associated factor 6 zinc finger 2 TRAF6_Z2 PF18048.1 27 AAFJ01000010_00100 - 723 0.44 10.7 3.7 2 3 1.9 2e+03 -1.0 0.0 5 10 620 625 618 628 0.81 TNF receptor-associated factor 6 zinc finger 2 TRAF6_Z2 PF18048.1 27 AAFJ01000010_00100 - 723 0.44 10.7 3.7 3 3 0.0011 1.1 9.4 0.4 5 13 674 682 671 684 0.89 TNF receptor-associated factor 6 zinc finger 2 Zn_Tnp_IS1 PF03811.13 35 AAFJ01000010_00100 - 723 0.46 10.2 3.3 1 2 0.069 73 3.2 0.2 6 12 619 625 617 627 0.88 InsA N-terminal domain Zn_Tnp_IS1 PF03811.13 35 AAFJ01000010_00100 - 723 0.46 10.2 3.3 2 2 0.0048 5.1 6.9 0.4 7 33 674 701 672 703 0.89 InsA N-terminal domain zf-HIT PF04438.16 30 AAFJ01000010_00100 - 723 0.48 10.3 4.2 1 2 0.045 47 4.0 0.3 11 23 616 628 614 643 0.83 HIT zinc finger zf-HIT PF04438.16 30 AAFJ01000010_00100 - 723 0.48 10.3 4.2 2 2 0.0056 5.9 6.8 0.4 11 20 670 679 667 682 0.86 HIT zinc finger zf_C2H2_10 PF18414.1 26 AAFJ01000010_00100 - 723 2.6 7.7 7.4 1 2 0.01 11 5.7 1.3 4 10 620 626 618 628 0.85 C2H2 type zinc-finger zf_C2H2_10 PF18414.1 26 AAFJ01000010_00100 - 723 2.6 7.7 7.4 2 2 0.023 25 4.5 0.5 2 9 672 679 671 681 0.88 C2H2 type zinc-finger PIN_4 PF13638.6 131 AAFJ01000010_00100 - 723 6 7.2 6.6 1 3 3.2 3.4e+03 -1.7 0.0 28 64 204 241 200 277 0.52 PIN domain PIN_4 PF13638.6 131 AAFJ01000010_00100 - 723 6 7.2 6.6 2 3 0.00077 0.81 10.0 1.0 60 126 468 554 441 558 0.75 PIN domain PIN_4 PF13638.6 131 AAFJ01000010_00100 - 723 6 7.2 6.6 3 3 8.5 8.9e+03 -3.1 0.1 79 91 607 619 574 620 0.47 PIN domain zf-H2C2_2 PF13465.6 26 AAFJ01000010_00100 - 723 8.1 7.1 8.1 1 2 0.064 67 4.2 0.1 9 24 613 628 609 630 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 AAFJ01000010_00100 - 723 8.1 7.1 8.1 2 2 0.012 12 6.5 0.7 11 24 669 682 665 683 0.82 Zinc-finger double domain TetR_C_5 PF08360.11 131 AAFJ01000010_00102 - 85 0.012 15.8 4.6 1 1 7.2e-07 0.013 15.7 4.6 8 85 6 84 1 85 0.75 QacR-like protein, C-terminal region YopX PF09643.10 131 AAFJ01000010_00103 - 196 2.1e-13 50.5 2.2 1 1 1.9e-17 3.4e-13 49.8 2.2 46 130 46 140 12 141 0.76 YopX protein YopX PF09643.10 131 AAFJ01000010_00104 - 141 1.7e-05 24.9 0.1 1 1 2.2e-09 2e-05 24.7 0.1 48 89 54 92 7 126 0.76 YopX protein TAFII28 PF04719.14 86 AAFJ01000010_00104 - 141 0.072 13.2 0.0 1 2 0.0052 47 4.2 0.0 52 66 73 87 68 106 0.77 hTAFII28-like protein conserved region TAFII28 PF04719.14 86 AAFJ01000010_00104 - 141 0.072 13.2 0.0 2 2 0.00065 5.9 7.1 0.0 11 36 110 135 104 141 0.87 hTAFII28-like protein conserved region CRISPR_Cas2 PF09827.9 76 AAFJ01000010_00106 - 140 0.00069 19.7 1.5 1 2 3.7e-07 0.0022 18.1 0.0 5 54 7 67 3 83 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 AAFJ01000010_00106 - 140 0.00069 19.7 1.5 2 2 0.15 8.8e+02 0.2 0.3 41 54 111 124 79 136 0.66 CRISPR associated protein Cas2 RRM_1 PF00076.22 70 AAFJ01000010_00106 - 140 0.0021 17.8 0.5 1 2 1.4e-06 0.0083 15.9 0.1 6 62 7 68 5 70 0.89 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_1 PF00076.22 70 AAFJ01000010_00106 - 140 0.0021 17.8 0.5 2 2 0.22 1.3e+03 -0.7 0.0 4 18 104 118 104 132 0.80 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LPD11 PF18824.1 69 AAFJ01000010_00106 - 140 0.086 12.9 1.8 1 3 0.34 2e+03 -1.1 0.0 28 50 10 32 2 33 0.77 Large polyvalent protein-associated domain 11 LPD11 PF18824.1 69 AAFJ01000010_00106 - 140 0.086 12.9 1.8 2 3 0.84 5e+03 -2.3 0.0 61 67 57 63 48 74 0.54 Large polyvalent protein-associated domain 11 LPD11 PF18824.1 69 AAFJ01000010_00106 - 140 0.086 12.9 1.8 3 3 2.9e-05 0.17 12.0 0.4 25 55 102 132 86 137 0.88 Large polyvalent protein-associated domain 11 AAA_31 PF13614.6 177 AAFJ01000010_00107 - 219 1.6e-11 44.5 4.7 1 1 1.2e-13 1.8e-10 41.1 4.7 2 74 2 85 1 217 0.77 AAA domain MipZ PF09140.11 262 AAFJ01000010_00107 - 219 3e-11 43.1 1.8 1 2 2.2e-09 3.3e-06 26.6 1.0 2 145 3 133 2 164 0.72 ATPase MipZ MipZ PF09140.11 262 AAFJ01000010_00107 - 219 3e-11 43.1 1.8 2 2 0.0043 6.4 6.0 0.0 213 258 174 214 132 217 0.88 ATPase MipZ CbiA PF01656.23 128 AAFJ01000010_00107 - 219 4.3e-09 36.5 0.1 1 1 4.3e-12 6.4e-09 35.9 0.1 5 110 8 171 4 190 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 305 AAFJ01000010_00107 - 219 0.00013 21.3 0.3 1 2 5.4e-07 0.00081 18.7 0.0 8 46 9 47 1 75 0.87 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 AAFJ01000010_00107 - 219 0.00013 21.3 0.3 2 2 0.21 3.1e+02 0.3 0.5 139 181 117 159 109 217 0.58 Anion-transporting ATPase VirC1 PF07015.11 231 AAFJ01000010_00107 - 219 0.0012 18.2 0.1 1 2 0.0012 1.7 7.9 0.0 1 40 1 40 1 58 0.86 VirC1 protein VirC1 PF07015.11 231 AAFJ01000010_00107 - 219 0.0012 18.2 0.1 2 2 0.00061 0.91 8.8 0.0 87 152 83 149 67 213 0.76 VirC1 protein ABC2_membrane_3 PF12698.7 345 AAFJ01000010_00107 - 219 0.0018 17.4 0.8 1 1 1.3e-06 0.002 17.3 0.8 21 128 19 138 13 211 0.62 ABC-2 family transporter protein AAA_24 PF13479.6 197 AAFJ01000010_00107 - 219 0.0038 17.0 1.2 1 2 4.1e-06 0.0061 16.3 0.1 11 73 11 87 9 91 0.75 AAA domain AAA_24 PF13479.6 197 AAFJ01000010_00107 - 219 0.0038 17.0 1.2 2 2 1.8 2.6e+03 -2.1 0.0 31 58 185 213 158 217 0.59 AAA domain ParA PF10609.9 246 AAFJ01000010_00107 - 219 0.004 16.6 0.0 1 1 4.8e-06 0.0072 15.8 0.0 6 41 4 39 1 58 0.85 NUBPL iron-transfer P-loop NTPase ATP_bind_1 PF03029.17 241 AAFJ01000010_00107 - 219 0.019 14.8 0.1 1 2 4.4e-05 0.066 13.0 0.0 6 34 12 40 10 50 0.91 Conserved hypothetical ATP binding protein ATP_bind_1 PF03029.17 241 AAFJ01000010_00107 - 219 0.019 14.8 0.1 2 2 0.88 1.3e+03 -1.1 0.0 196 196 89 89 40 153 0.53 Conserved hypothetical ATP binding protein DUF2139 PF09910.9 340 AAFJ01000010_00107 - 219 0.14 11.3 0.0 1 1 0.0003 0.45 9.6 0.0 170 251 51 128 2 138 0.82 Uncharacterized protein conserved in archaea (DUF2139) CBP_BcsQ PF06564.12 234 AAFJ01000010_00107 - 219 0.14 11.6 0.0 1 2 0.00038 0.57 9.6 0.0 1 39 1 39 1 56 0.88 Cellulose biosynthesis protein BcsQ CBP_BcsQ PF06564.12 234 AAFJ01000010_00107 - 219 0.14 11.6 0.0 2 2 0.52 7.8e+02 -0.6 0.0 154 176 129 152 98 179 0.69 Cellulose biosynthesis protein BcsQ AAA_14 PF13173.6 131 AAFJ01000010_00107 - 219 0.25 11.4 7.9 1 3 3.3e-05 0.05 13.6 1.3 13 71 13 86 11 103 0.67 AAA domain AAA_14 PF13173.6 131 AAFJ01000010_00107 - 219 0.25 11.4 7.9 2 3 1.1 1.7e+03 -1.0 0.1 54 69 128 143 92 172 0.54 AAA domain AAA_14 PF13173.6 131 AAFJ01000010_00107 - 219 0.25 11.4 7.9 3 3 0.35 5.2e+02 0.6 0.1 20 58 171 213 167 218 0.65 AAA domain SNF2_N PF00176.23 350 AAFJ01000010_00109 - 1969 3.6e-15 55.6 0.1 1 1 4.3e-18 1.1e-14 53.9 0.1 59 244 978 1229 962 1252 0.81 SNF2 family N-terminal domain Helicase_C PF00271.31 111 AAFJ01000010_00109 - 1969 1.5e-09 38.2 7.1 1 4 2.1 5.5e+03 -2.3 0.2 7 68 533 593 528 600 0.68 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 AAFJ01000010_00109 - 1969 1.5e-09 38.2 7.1 2 4 0.19 4.8e+02 1.1 0.0 38 71 1029 1062 995 1065 0.73 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 AAFJ01000010_00109 - 1969 1.5e-09 38.2 7.1 3 4 1.1e-12 2.8e-09 37.3 0.0 21 110 1496 1593 1482 1594 0.80 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 AAFJ01000010_00109 - 1969 1.5e-09 38.2 7.1 4 4 2.9 7.3e+03 -2.7 0.2 44 68 1925 1947 1884 1954 0.61 Helicase conserved C-terminal domain ResIII PF04851.15 171 AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 1 6 1.5 3.8e+03 -2.3 0.0 62 85 264 291 253 344 0.53 Type III restriction enzyme, res subunit ResIII PF04851.15 171 AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 2 6 5.5 1.4e+04 -4.1 0.3 79 119 526 569 493 586 0.60 Type III restriction enzyme, res subunit ResIII PF04851.15 171 AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 3 6 0.82 2.1e+03 -1.5 1.8 50 120 856 930 849 950 0.63 Type III restriction enzyme, res subunit ResIII PF04851.15 171 AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 4 6 1e-11 2.6e-08 34.1 3.3 3 169 959 1198 957 1200 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 5 6 2 5e+03 -2.7 1.2 56 114 1686 1730 1620 1803 0.61 Type III restriction enzyme, res subunit ResIII PF04851.15 171 AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 6 6 2.8 7e+03 -3.2 1.0 64 74 1911 1921 1876 1964 0.46 Type III restriction enzyme, res subunit Eco57I PF07669.11 106 AAFJ01000010_00109 - 1969 2.1e-06 28.2 1.2 1 3 1e-08 2.6e-05 24.7 0.1 2 72 281 348 280 383 0.65 Eco57I restriction-modification methylase Eco57I PF07669.11 106 AAFJ01000010_00109 - 1969 2.1e-06 28.2 1.2 2 3 7 1.8e+04 -4.1 0.0 30 44 761 775 758 777 0.86 Eco57I restriction-modification methylase Eco57I PF07669.11 106 AAFJ01000010_00109 - 1969 2.1e-06 28.2 1.2 3 3 2.3 6e+03 -2.2 0.0 34 72 902 939 884 960 0.65 Eco57I restriction-modification methylase DEAD PF00270.29 176 AAFJ01000010_00109 - 1969 0.00053 19.8 2.9 1 3 1.3 3.4e+03 -2.4 0.0 52 81 261 285 246 311 0.72 DEAD/DEAH box helicase DEAD PF00270.29 176 AAFJ01000010_00109 - 1969 0.00053 19.8 2.9 2 3 2.3e-06 0.006 16.4 1.4 6 150 966 1167 961 1205 0.70 DEAD/DEAH box helicase DEAD PF00270.29 176 AAFJ01000010_00109 - 1969 0.00053 19.8 2.9 3 3 3.5 9.1e+03 -3.8 0.0 80 110 1525 1560 1509 1573 0.59 DEAD/DEAH box helicase MTS PF05175.14 169 AAFJ01000010_00109 - 1969 0.0033 17.0 0.0 1 1 5.8e-06 0.015 14.9 0.0 79 138 261 329 218 339 0.69 Methyltransferase small domain Methyltransf_23 PF13489.6 165 AAFJ01000010_00109 - 1969 0.056 13.3 0.0 1 1 9.8e-05 0.25 11.2 0.0 22 89 221 288 194 345 0.86 Methyltransferase domain Fic PF02661.18 97 AAFJ01000010_00112 - 156 0.025 15.5 0.0 1 2 1.2 1.1e+04 -2.6 0.0 44 58 11 27 6 46 0.60 Fic/DOC family Fic PF02661.18 97 AAFJ01000010_00112 - 156 0.025 15.5 0.0 2 2 6.1e-06 0.055 14.4 0.0 2 31 58 90 57 124 0.76 Fic/DOC family Adenyl_cycl_N PF12633.7 199 AAFJ01000010_00112 - 156 0.086 12.7 0.1 1 1 1.8e-05 0.16 11.8 0.1 105 143 9 47 2 55 0.92 Adenylate cyclase NT domain CRISPR_Cas2 PF09827.9 76 AAFJ01000010_00114 - 151 1e-05 25.6 2.4 1 2 6.4e-09 1.6e-05 24.9 0.0 5 52 12 76 9 91 0.73 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 AAFJ01000010_00114 - 151 1e-05 25.6 2.4 2 2 0.45 1.1e+03 -0.2 0.7 43 57 124 141 113 148 0.58 CRISPR associated protein Cas2 GIT_CC PF16559.5 66 AAFJ01000010_00114 - 151 0.014 15.2 5.0 1 1 8.9e-06 0.023 14.6 5.0 10 59 90 139 84 148 0.92 GIT coiled-coil Rho guanine nucleotide exchange factor ABC_tran_Xtn PF12848.7 85 AAFJ01000010_00114 - 151 0.014 15.4 2.7 1 1 9.3e-06 0.024 14.7 2.7 23 59 109 145 93 151 0.81 ABC transporter DUF5595 PF18077.1 73 AAFJ01000010_00114 - 151 0.039 14.0 3.6 1 1 3.1e-05 0.08 13.0 3.6 26 72 100 145 95 146 0.90 Domain of unknown function (DUF5595) DUF1722 PF08349.11 117 AAFJ01000010_00114 - 151 0.047 14.0 2.6 1 3 0.33 8.6e+02 0.2 0.0 40 71 19 50 16 66 0.70 Protein of unknown function (DUF1722) DUF1722 PF08349.11 117 AAFJ01000010_00114 - 151 0.047 14.0 2.6 2 3 0.013 33 4.8 0.0 55 106 46 97 37 102 0.88 Protein of unknown function (DUF1722) DUF1722 PF08349.11 117 AAFJ01000010_00114 - 151 0.047 14.0 2.6 3 3 0.0024 6.2 7.1 2.0 35 72 109 146 96 150 0.86 Protein of unknown function (DUF1722) NPBW PF15180.6 116 AAFJ01000010_00114 - 151 0.22 11.4 0.6 1 1 0.00015 0.38 10.6 0.6 61 94 115 148 100 151 0.74 Neuropeptides B and W EMP24_GP25L PF01105.24 182 AAFJ01000010_00114 - 151 0.6 10.0 5.3 1 2 0.061 1.6e+02 2.1 0.1 87 156 7 77 1 79 0.62 emp24/gp25L/p24 family/GOLD EMP24_GP25L PF01105.24 182 AAFJ01000010_00114 - 151 0.6 10.0 5.3 2 2 0.00038 0.97 9.3 1.9 78 129 82 142 81 150 0.68 emp24/gp25L/p24 family/GOLD DUF2600 PF10776.9 328 AAFJ01000010_00115 - 151 0.0034 16.3 0.5 1 1 4.2e-06 0.0044 15.9 0.5 193 244 62 112 33 126 0.87 Protein of unknown function (DUF2600) DUF2070 PF09843.9 564 AAFJ01000010_00115 - 151 0.0043 15.4 8.7 1 1 4.6e-06 0.0049 15.2 8.7 67 171 8 141 1 147 0.74 Predicted membrane protein (DUF2070) COX7a PF02238.15 53 AAFJ01000010_00115 - 151 0.0096 16.3 1.7 1 2 0.00072 0.76 10.2 0.1 14 49 3 38 2 41 0.87 Cytochrome c oxidase subunit VII COX7a PF02238.15 53 AAFJ01000010_00115 - 151 0.0096 16.3 1.7 2 2 0.04 42 4.6 0.1 27 47 117 137 113 141 0.89 Cytochrome c oxidase subunit VII HlyIII PF03006.20 224 AAFJ01000010_00115 - 151 0.013 15.3 7.6 1 1 1.4e-05 0.015 15.1 7.6 39 162 13 143 2 151 0.70 Haemolysin-III related DUF1129 PF06570.11 206 AAFJ01000010_00115 - 151 0.022 14.3 8.0 1 2 0.044 46 3.4 0.1 142 182 4 45 1 52 0.70 Protein of unknown function (DUF1129) DUF1129 PF06570.11 206 AAFJ01000010_00115 - 151 0.022 14.3 8.0 2 2 2.6e-05 0.027 13.9 3.5 87 172 55 139 42 148 0.77 Protein of unknown function (DUF1129) DUF1772 PF08592.11 137 AAFJ01000010_00115 - 151 0.027 14.8 3.3 1 1 3.1e-05 0.033 14.5 2.3 26 80 7 69 2 116 0.80 Domain of unknown function (DUF1772) DUF2663 PF10864.8 127 AAFJ01000010_00115 - 151 0.076 13.4 14.4 1 2 0.00051 0.53 10.7 5.7 9 80 6 78 1 81 0.70 Protein of unknown function (DUF2663) DUF2663 PF10864.8 127 AAFJ01000010_00115 - 151 0.076 13.4 14.4 2 2 0.0028 3 8.3 1.5 26 78 89 146 80 149 0.54 Protein of unknown function (DUF2663) DUF898 PF05987.13 342 AAFJ01000010_00115 - 151 0.079 12.0 6.5 1 2 0.00054 0.57 9.2 2.6 174 241 2 69 1 80 0.76 Bacterial protein of unknown function (DUF898) DUF898 PF05987.13 342 AAFJ01000010_00115 - 151 0.079 12.0 6.5 2 2 0.0096 10 5.1 0.1 196 244 90 138 77 148 0.57 Bacterial protein of unknown function (DUF898) DUF418 PF04235.12 163 AAFJ01000010_00115 - 151 0.12 12.3 2.2 1 2 0.00023 0.24 11.3 0.7 14 89 10 85 4 87 0.80 Protein of unknown function (DUF418) DUF418 PF04235.12 163 AAFJ01000010_00115 - 151 0.12 12.3 2.2 2 2 0.016 16 5.4 0.0 6 74 69 137 69 147 0.85 Protein of unknown function (DUF418) Zip PF02535.22 333 AAFJ01000010_00115 - 151 0.18 11.0 6.0 1 1 0.0011 1.2 8.3 6.0 25 98 5 78 1 149 0.88 ZIP Zinc transporter Nodulin-like PF06813.13 250 AAFJ01000010_00115 - 151 0.21 11.0 7.9 1 2 0.0051 5.4 6.4 5.0 149 243 3 96 1 97 0.80 Nodulin-like Nodulin-like PF06813.13 250 AAFJ01000010_00115 - 151 0.21 11.0 7.9 2 2 7.3e-05 0.077 12.5 3.6 138 222 54 144 52 150 0.58 Nodulin-like DUF4293 PF14126.6 154 AAFJ01000010_00115 - 151 0.24 11.7 12.1 1 1 0.0005 0.53 10.5 12.1 6 134 15 134 13 147 0.60 Domain of unknown function (DUF4293) FixH PF05751.11 150 AAFJ01000010_00115 - 151 0.38 10.8 4.2 1 3 0.00039 0.41 10.6 0.3 1 33 6 38 6 48 0.90 FixH FixH PF05751.11 150 AAFJ01000010_00115 - 151 0.38 10.8 4.2 2 3 0.77 8.1e+02 -0.1 0.0 18 33 88 103 81 109 0.82 FixH FixH PF05751.11 150 AAFJ01000010_00115 - 151 0.38 10.8 4.2 3 3 1.7 1.8e+03 -1.1 0.2 11 25 124 138 121 148 0.54 FixH DUF1673 PF07895.11 230 AAFJ01000010_00115 - 151 1.8 8.3 17.6 1 2 5.9e-05 0.062 13.0 8.4 152 227 17 93 4 96 0.65 Protein of unknown function (DUF1673) DUF1673 PF07895.11 230 AAFJ01000010_00115 - 151 1.8 8.3 17.6 2 2 0.15 1.5e+02 1.9 2.9 156 212 92 147 88 150 0.48 Protein of unknown function (DUF1673) GPI2 PF06432.11 280 AAFJ01000010_00115 - 151 2.4 7.6 9.8 1 2 0.67 7.1e+02 -0.6 0.7 193 211 18 36 11 39 0.75 Phosphatidylinositol N-acetylglucosaminyltransferase GPI2 PF06432.11 280 AAFJ01000010_00115 - 151 2.4 7.6 9.8 2 2 0.00011 0.11 11.9 3.3 27 117 38 126 32 139 0.76 Phosphatidylinositol N-acetylglucosaminyltransferase DUF4131 PF13567.6 167 AAFJ01000010_00115 - 151 3.4 7.3 5.3 1 2 0.00081 0.85 9.3 1.2 14 56 23 79 12 113 0.72 Domain of unknown function (DUF4131) DUF4131 PF13567.6 167 AAFJ01000010_00115 - 151 3.4 7.3 5.3 2 2 1.3 1.3e+03 -1.1 0.1 3 19 120 136 118 148 0.62 Domain of unknown function (DUF4131) Tmpp129 PF10272.9 355 AAFJ01000010_00115 - 151 8.7 5.5 9.3 1 2 0.0024 2.5 7.3 5.1 30 103 6 78 1 90 0.77 Putative transmembrane protein precursor Tmpp129 PF10272.9 355 AAFJ01000010_00115 - 151 8.7 5.5 9.3 2 2 0.14 1.5e+02 1.5 0.5 46 92 90 138 69 150 0.36 Putative transmembrane protein precursor Relaxase PF03432.14 242 AAFJ01000010_00116 - 554 2e-07 30.9 0.8 1 3 0.14 1.2e+03 -1.2 0.6 125 176 57 91 40 128 0.47 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 AAFJ01000010_00116 - 554 2e-07 30.9 0.8 2 3 2.2e-11 2e-07 30.9 0.8 33 157 142 261 128 286 0.80 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 AAFJ01000010_00116 - 554 2e-07 30.9 0.8 3 3 0.043 3.9e+02 0.5 0.9 131 164 415 461 357 481 0.72 Relaxase/Mobilisation nuclease domain Tektin PF03148.14 383 AAFJ01000010_00116 - 554 0.19 10.5 6.0 1 2 1.4e-05 0.13 11.0 0.3 38 89 214 265 206 273 0.93 Tektin family Tektin PF03148.14 383 AAFJ01000010_00116 - 554 0.19 10.5 6.0 2 2 0.014 1.2e+02 1.2 1.1 171 224 412 466 391 471 0.65 Tektin family RHH_7 PF16777.5 74 AAFJ01000010_00117 - 185 0.085 13.3 6.7 1 2 0.02 1.2e+02 3.2 0.1 36 59 5 28 2 40 0.86 Transcriptional regulator, RHH-like, CopG RHH_7 PF16777.5 74 AAFJ01000010_00117 - 185 0.085 13.3 6.7 2 2 5.4e-05 0.32 11.4 2.9 24 65 58 100 38 107 0.85 Transcriptional regulator, RHH-like, CopG TMEM95 PF15203.6 151 AAFJ01000010_00117 - 185 0.58 9.8 2.7 1 2 7.6e-05 0.45 10.1 0.5 26 81 44 105 18 112 0.71 TMEM95 family TMEM95 PF15203.6 151 AAFJ01000010_00117 - 185 0.58 9.8 2.7 2 2 0.21 1.2e+03 -1.0 0.1 9 42 130 163 125 174 0.71 TMEM95 family pRN1_helical PF13010.6 136 AAFJ01000010_00117 - 185 4.1 7.4 9.5 1 2 0.00039 2.3 8.2 6.5 4 62 8 73 5 84 0.80 Primase helical domain pRN1_helical PF13010.6 136 AAFJ01000010_00117 - 185 4.1 7.4 9.5 2 2 0.16 9.3e+02 -0.3 0.1 38 64 115 141 73 161 0.56 Primase helical domain EssA PF10661.9 148 AAFJ01000010_00118 - 80 0.2 11.5 8.8 1 1 9.8e-06 0.18 11.7 7.9 39 76 4 41 2 58 0.83 WXG100 protein secretion system (Wss), protein EssA ANAPC4 PF12896.7 204 AAFJ01000010_00119 - 101 0.11 11.9 0.1 1 1 8e-06 0.14 11.6 0.1 45 88 28 70 23 81 0.92 Anaphase-promoting complex, cyclosome, subunit 4 Fic PF02661.18 97 AAFJ01000017_00001 - 244 1.7e-17 64.0 0.1 1 2 5.1e-21 4.6e-17 62.7 0.0 2 96 80 180 79 181 0.94 Fic/DOC family Fic PF02661.18 97 AAFJ01000017_00001 - 244 1.7e-17 64.0 0.1 2 2 0.79 7.1e+03 -2.0 0.0 38 57 201 220 191 232 0.58 Fic/DOC family DUF1495 PF07381.11 90 AAFJ01000017_00001 - 244 0.13 12.2 0.0 1 2 0.00013 1.1 9.1 0.0 29 64 11 46 6 57 0.89 Winged helix DNA-binding domain (DUF1495) DUF1495 PF07381.11 90 AAFJ01000017_00001 - 244 0.13 12.2 0.0 2 2 0.078 7e+02 0.1 0.0 5 28 190 212 187 222 0.74 Winged helix DNA-binding domain (DUF1495) Toprim_3 PF13362.6 95 AAFJ01000017_00002 - 376 5.2e-09 36.3 0.0 1 1 9.2e-13 8.2e-09 35.7 0.0 3 94 264 365 262 366 0.83 Toprim domain Toprim_4 PF13662.6 89 AAFJ01000017_00002 - 376 0.017 15.6 0.1 1 1 3.9e-06 0.035 14.6 0.1 2 80 262 336 261 341 0.89 Toprim domain SSB PF00436.25 104 AAFJ01000017_00005 - 142 1.4e-29 102.2 0.8 1 1 2.3e-33 2.1e-29 101.6 0.8 1 104 2 104 2 104 0.97 Single-strand binding protein family tRNA_anti-codon PF01336.25 76 AAFJ01000017_00005 - 142 0.00012 22.0 0.1 1 1 1.9e-08 0.00017 21.5 0.1 12 74 32 102 12 104 0.84 OB-fold nucleic acid binding domain DD_K PF12121.8 23 AAFJ01000017_00006 - 48 6 7.1 6.5 1 2 0.03 5.3e+02 0.9 0.1 6 11 4 9 1 11 0.77 Dermaseptin DD_K PF12121.8 23 AAFJ01000017_00006 - 48 6 7.1 6.5 2 2 0.00015 2.6 8.2 2.2 2 9 40 47 40 48 0.89 Dermaseptin DUF1640 PF07798.11 175 AAFJ01000017_00008 - 112 0.0011 19.0 0.7 1 1 1.6e-07 0.0014 18.7 0.7 99 174 20 111 15 112 0.72 Protein of unknown function (DUF1640) Merozoite_SPAM PF07133.11 182 AAFJ01000017_00008 - 112 0.0095 16.0 4.1 1 1 1.3e-06 0.012 15.6 4.1 25 81 28 85 22 90 0.90 Merozoite surface protein (SPAM) RecT PF03837.14 199 AAFJ01000017_00009 - 268 2.3e-36 125.2 0.1 1 1 2.2e-40 4e-36 124.4 0.0 3 194 13 194 11 199 0.92 RecT family GGA_N-GAT PF18308.1 39 AAFJ01000017_00010 - 195 0.19 11.4 2.8 1 2 8e-06 0.14 11.8 0.7 22 38 8 24 5 25 0.87 GGA N-GAT domain GGA_N-GAT PF18308.1 39 AAFJ01000017_00010 - 195 0.19 11.4 2.8 2 2 0.43 7.7e+03 -3.4 0.1 22 27 111 116 111 117 0.80 GGA N-GAT domain DUF2624 PF11116.8 83 AAFJ01000017_00015 - 135 0.041 14.8 0.1 1 1 9.3e-06 0.084 13.8 0.1 19 63 53 97 49 102 0.87 Protein of unknown function (DUF2624) DUF4883 PF16224.5 119 AAFJ01000017_00015 - 135 0.075 13.3 2.6 1 1 1e-05 0.094 13.0 2.6 22 114 2 95 1 98 0.90 DOmain of unknown function (DUF4883) DUF2031 PF09592.10 227 AAFJ01000017_00019 - 64 0.013 15.0 5.3 1 1 1.4e-06 0.013 15.1 5.3 109 165 2 58 1 64 0.89 Protein of unknown function (DUF2031) RNA_pol_Rpb2_45 PF10385.9 65 AAFJ01000017_00019 - 64 0.1 12.9 0.4 1 1 1.4e-05 0.13 12.6 0.4 19 58 11 52 3 58 0.73 RNA polymerase beta subunit external 1 domain DUF4830 PF16112.5 84 AAFJ01000017_00020 - 97 0.0075 16.7 0.1 1 1 1.1e-06 0.0094 16.4 0.1 21 72 11 75 4 89 0.74 Domain of unknown function (DUF4830) ParE_toxin PF05016.15 90 AAFJ01000017_00020 - 97 0.07 13.7 0.0 1 1 1e-05 0.094 13.3 0.0 7 88 4 82 1 83 0.74 ParE toxin of type II toxin-antitoxin system, parDE PDDEXK_1 PF12705.7 255 AAFJ01000017_00022 - 317 1.5e-05 25.0 0.0 1 2 6.2e-09 2.8e-05 24.2 0.0 125 255 94 213 33 213 0.69 PD-(D/E)XK nuclease superfamily PDDEXK_1 PF12705.7 255 AAFJ01000017_00022 - 317 1.5e-05 25.0 0.0 2 2 1.3 5.8e+03 -3.1 0.0 94 107 251 265 227 303 0.57 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 162 AAFJ01000017_00022 - 317 4.4e-05 23.6 1.4 1 2 1.1e-08 4.9e-05 23.5 0.1 54 160 98 212 74 214 0.82 Domain of unknown function DUF83 Cas_Cas4 PF01930.17 162 AAFJ01000017_00022 - 317 4.4e-05 23.6 1.4 2 2 0.89 4e+03 -2.2 0.1 122 139 239 256 229 271 0.51 Domain of unknown function DUF83 MapZ_C2 PF18708.1 92 AAFJ01000017_00022 - 317 0.021 15.1 0.1 1 2 1.8e-05 0.081 13.2 0.0 58 90 131 164 115 165 0.80 MapZ extracellular C-terminal domain 2 MapZ_C2 PF18708.1 92 AAFJ01000017_00022 - 317 0.021 15.1 0.1 2 2 2.7 1.2e+04 -3.4 0.0 30 38 306 314 292 315 0.66 MapZ extracellular C-terminal domain 2 NERD PF08378.11 108 AAFJ01000017_00022 - 317 0.072 13.6 0.1 1 1 3.7e-05 0.17 12.4 0.1 8 70 72 134 65 193 0.69 Nuclease-related domain G-gamma PF00631.22 68 AAFJ01000017_00023 - 200 0.045 13.8 0.6 1 1 1.2e-05 0.11 12.5 0.6 4 32 8 38 6 46 0.86 GGL domain UPF0449 PF15136.6 101 AAFJ01000017_00023 - 200 0.15 12.6 1.7 1 2 0.002 18 5.9 0.5 69 92 10 33 2 38 0.81 Uncharacterised protein family UPF0449 UPF0449 PF15136.6 101 AAFJ01000017_00023 - 200 0.15 12.6 1.7 2 2 0.0021 19 5.8 0.0 54 94 87 129 67 136 0.79 Uncharacterised protein family UPF0449 YycI PF09648.10 230 AAFJ01000017_00024 - 74 0.011 15.3 0.6 1 1 1.9e-06 0.011 15.3 0.6 149 195 17 61 2 72 0.82 YycH protein Mad3_BUB1_I PF08311.12 124 AAFJ01000017_00024 - 74 0.023 14.7 1.0 1 1 4.5e-06 0.027 14.5 1.0 6 75 2 64 1 71 0.91 Mad3/BUB1 homology region 1 Rsbr_N PF08678.10 130 AAFJ01000017_00024 - 74 0.049 13.7 0.1 1 2 0.0072 43 4.2 0.1 97 126 5 34 1 37 0.81 Rsbr N terminal Rsbr_N PF08678.10 130 AAFJ01000017_00024 - 74 0.049 13.7 0.1 2 2 0.0002 1.2 9.2 0.0 51 83 38 70 23 73 0.79 Rsbr N terminal DUF4450 PF14614.6 217 AAFL01000016_00001 - 139 0.0036 16.9 0.7 1 2 0.5 3e+03 -2.4 0.0 182 194 34 45 16 58 0.48 Domain of unknown function (DUF4450) DUF4450 PF14614.6 217 AAFL01000016_00001 - 139 0.0036 16.9 0.7 2 2 9.4e-07 0.0056 16.3 0.1 6 48 74 116 71 125 0.94 Domain of unknown function (DUF4450) VanW PF04294.13 130 AAFL01000016_00001 - 139 0.013 15.2 0.3 1 2 0.22 1.3e+03 -1.0 0.0 93 117 20 45 10 56 0.66 VanW like protein VanW PF04294.13 130 AAFL01000016_00001 - 139 0.013 15.2 0.3 2 2 7.5e-06 0.045 13.4 0.1 26 66 88 129 77 134 0.87 VanW like protein SBDS PF01172.18 88 AAFL01000016_00001 - 139 0.089 12.9 4.1 1 2 0.15 9.2e+02 0.0 0.1 66 76 25 35 13 38 0.82 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS PF01172.18 88 AAFL01000016_00001 - 139 0.089 12.9 4.1 2 2 2.8e-05 0.17 12.0 2.2 9 31 37 59 32 119 0.73 Shwachman-Bodian-Diamond syndrome (SBDS) protein Phage_lysozyme PF00959.19 109 AAFL01000016_00002 - 644 1.2e-10 41.7 1.2 1 2 0.99 8.9e+03 -2.8 0.1 17 37 323 343 307 360 0.73 Phage lysozyme Phage_lysozyme PF00959.19 109 AAFL01000016_00002 - 644 1.2e-10 41.7 1.2 2 2 2.2e-14 2e-10 41.1 0.1 3 108 521 630 519 631 0.86 Phage lysozyme Vta1 PF04652.16 145 AAFL01000016_00002 - 644 2.6 8.0 10.4 1 4 0.47 4.2e+03 -2.4 0.1 116 137 148 170 140 173 0.78 Vta1 like Vta1 PF04652.16 145 AAFL01000016_00002 - 644 2.6 8.0 10.4 2 4 0.16 1.4e+03 -0.9 0.2 29 60 317 356 312 369 0.69 Vta1 like Vta1 PF04652.16 145 AAFL01000016_00002 - 644 2.6 8.0 10.4 3 4 6.3e-06 0.056 13.4 0.9 8 79 392 467 384 471 0.79 Vta1 like Vta1 PF04652.16 145 AAFL01000016_00002 - 644 2.6 8.0 10.4 4 4 0.19 1.7e+03 -1.2 0.0 21 58 464 501 463 515 0.80 Vta1 like SseC PF04888.12 317 AAFL01000016_00004 - 1310 0.0049 16.5 0.2 1 1 3e-06 0.014 15.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family ThrE PF06738.12 241 AAFL01000016_00004 - 1310 0.014 14.8 0.8 1 1 7.8e-06 0.035 13.5 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter Hormone_2 PF00123.20 28 AAFL01000016_00004 - 1310 0.036 14.0 0.1 1 1 3.5e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone APOBEC_C PF05240.14 78 AAFL01000016_00004 - 1310 0.061 13.3 0.4 1 1 6.9e-05 0.31 11.0 0.4 26 76 766 819 755 821 0.85 APOBEC-like C-terminal domain UvrA_DNA-bind PF17755.1 110 AAFL01000016_00005 - 422 0.012 15.9 0.3 1 2 0.00028 5.1 7.5 0.1 24 61 32 69 19 84 0.84 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 AAFL01000016_00005 - 422 0.012 15.9 0.3 2 2 0.00086 15 5.9 0.0 15 33 92 109 88 126 0.76 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 AAFL01000016_00007 - 426 0.0051 17.1 0.3 1 3 0.00018 3.2 8.1 0.0 24 65 36 77 30 90 0.84 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 AAFL01000016_00007 - 426 0.0051 17.1 0.3 2 3 0.00088 16 5.9 0.0 15 33 96 113 92 129 0.75 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 AAFL01000016_00007 - 426 0.0051 17.1 0.3 3 3 0.29 5.3e+03 -2.2 0.0 77 97 316 336 306 338 0.82 UvrA DNA-binding domain Glyco_tranf_2_5 PF13712.6 210 AAFL01000016_00008 - 267 0.00068 19.4 3.8 1 1 7.1e-08 0.0013 18.5 3.8 4 77 114 190 111 198 0.85 Glycosyltransferase like family TraG_N PF07916.11 467 AAFL01000016_00009 - 900 3e-39 135.2 20.8 1 3 1.7e-43 3e-39 135.2 20.8 38 465 23 446 1 452 0.78 TraG-like protein, N-terminal region TraG_N PF07916.11 467 AAFL01000016_00009 - 900 3e-39 135.2 20.8 2 3 0.1 1.8e+03 -2.6 0.9 267 318 538 590 504 600 0.52 TraG-like protein, N-terminal region TraG_N PF07916.11 467 AAFL01000016_00009 - 900 3e-39 135.2 20.8 3 3 1 1.8e+04 -14.0 16.2 228 265 808 845 652 899 0.59 TraG-like protein, N-terminal region DUF4131 PF13567.6 167 AAFL01000016_00010 - 106 0.0008 19.1 0.1 1 1 2.8e-07 0.001 18.8 0.1 3 83 19 97 17 100 0.70 Domain of unknown function (DUF4131) DUF981 PF06168.11 187 AAFL01000016_00010 - 106 0.015 15.2 3.3 1 1 5.2e-06 0.019 14.9 3.3 119 175 9 66 4 73 0.87 Protein of unknown function (DUF981) Wzy_C PF04932.15 155 AAFL01000016_00010 - 106 0.056 13.1 1.3 1 1 1.8e-05 0.064 12.9 1.3 19 65 24 71 19 96 0.81 O-Antigen ligase DUF2663 PF10864.8 127 AAFL01000016_00010 - 106 0.13 12.7 2.1 1 1 4.5e-05 0.16 12.4 2.1 8 80 9 81 2 86 0.58 Protein of unknown function (DUF2663) DUF2721 PF11026.8 129 AAFL01000016_00010 - 106 0.27 11.1 5.3 1 1 9.5e-05 0.34 10.8 5.3 59 118 12 66 3 69 0.85 Protein of unknown function (DUF2721) YafQ_toxin PF15738.5 88 AAFL01000016_00011 - 91 8.9e-29 99.7 1.1 1 1 5.4e-33 9.7e-29 99.5 1.1 2 88 3 89 2 89 0.98 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 AAFL01000016_00013 - 93 1.1e-07 32.4 0.1 1 1 6.6e-12 1.2e-07 32.3 0.1 4 82 6 85 3 89 0.87 ParE toxin of type II toxin-antitoxin system, parDE HicB_lk_antitox PF15919.5 123 AAFL01000016_00015 - 119 8.3e-09 35.6 0.3 1 2 4.2e-06 0.038 14.1 0.0 1 60 12 74 12 79 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 AAFL01000016_00015 - 119 8.3e-09 35.6 0.3 2 2 3.9e-08 0.00035 20.7 0.1 88 123 77 108 72 108 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 AAFL01000016_00015 - 119 0.15 11.9 0.0 1 1 3.3e-05 0.29 11.0 0.0 3 35 80 112 79 115 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HicA_toxin PF07927.12 58 AAFL01000016_00016 - 86 1.8e-06 27.9 0.0 1 1 2.1e-10 3.8e-06 26.9 0.0 5 55 35 82 31 83 0.88 HicA toxin of bacterial toxin-antitoxin, DUF5309 PF17236.2 280 AAFL01000016_00017 - 81 3e-05 23.5 0.5 1 1 1.8e-09 3.3e-05 23.4 0.5 4 53 24 74 21 81 0.82 Family of unknown function (DUF5309) SGT1 PF07093.11 583 AAFL01000016_00019 - 50 0.046 12.2 2.7 1 1 7.5e-06 0.045 12.2 2.7 511 553 7 49 1 50 0.79 SGT1 protein PG_binding_4 PF12229.8 114 AAFL01000016_00019 - 50 0.057 13.7 1.0 1 1 1.1e-05 0.065 13.5 1.0 42 79 10 48 2 50 0.81 Putative peptidoglycan binding domain DUF2175 PF09943.9 98 AAFL01000016_00019 - 50 0.077 13.3 1.2 1 1 1.4e-05 0.082 13.2 1.2 60 89 9 38 2 47 0.83 Uncharacterized protein conserved in archaea (DUF2175) DUF4795 PF16043.5 204 AAFL01000016_00020 - 201 0.026 14.1 0.1 1 1 2.4e-06 0.043 13.4 0.1 60 124 45 109 31 174 0.86 Domain of unknown function (DUF4795) DUF3825 PF12873.7 239 AAFL01000016_00021 - 335 1.9e-28 99.6 0.3 1 1 1.7e-32 3e-28 98.9 0.3 2 239 107 330 106 330 0.85 Domain of unknown function (DUF3825) GAGBD PF16828.5 152 AAFL01000016_00022 - 80 0.011 15.8 1.4 1 1 6.7e-07 0.012 15.7 1.4 2 69 9 76 8 80 0.90 GAG-binding domain on surface antigen IMS_C PF11799.8 118 AAFL01000016_00025 - 236 1.1e-12 48.7 0.0 1 1 2.1e-16 1.9e-12 48.0 0.0 8 111 94 221 90 226 0.91 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 32 AAFL01000016_00025 - 236 0.0002 21.5 0.0 1 2 7.5e-08 0.00067 19.8 0.1 6 32 19 46 16 46 0.92 IMS family HHH motif IMS_HHH PF11798.8 32 AAFL01000016_00025 - 236 0.0002 21.5 0.0 2 2 1.6 1.4e+04 -3.2 0.0 17 28 79 90 79 92 0.79 IMS family HHH motif AAA_25 PF13481.6 194 AAFL01000016_00026 - 623 4.9e-30 104.5 0.0 1 1 8.5e-33 8.9e-30 103.7 0.0 11 193 306 475 297 476 0.87 AAA domain Toprim_2 PF13155.6 90 AAFL01000016_00026 - 623 6.6e-18 64.9 0.0 1 2 2.4e-20 2.5e-17 63.1 0.0 1 90 189 278 189 278 0.91 Toprim-like Toprim_2 PF13155.6 90 AAFL01000016_00026 - 623 6.6e-18 64.9 0.0 2 2 4.5 4.7e+03 -1.9 0.1 44 77 393 427 381 441 0.75 Toprim-like DUF3991 PF13154.6 76 AAFL01000016_00026 - 623 3.3e-14 53.0 0.0 1 2 1.6e-16 1.7e-13 50.7 0.0 1 74 112 183 112 185 0.93 Protein of unknown function (DUF3991) DUF3991 PF13154.6 76 AAFL01000016_00026 - 623 3.3e-14 53.0 0.0 2 2 2.8 3e+03 -1.3 0.0 6 19 589 602 587 620 0.71 Protein of unknown function (DUF3991) DnaB_C PF03796.15 255 AAFL01000016_00026 - 623 8.6e-09 35.1 0.0 1 2 0.00037 0.39 10.0 0.0 19 45 329 355 326 366 0.87 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 AAFL01000016_00026 - 623 8.6e-09 35.1 0.0 2 2 4.7e-08 4.9e-05 22.8 0.0 90 185 385 478 369 490 0.79 DnaB-like helicase C terminal domain Toprim_3 PF13362.6 95 AAFL01000016_00026 - 623 1.8e-08 34.6 0.2 1 2 4.2e-10 4.4e-07 30.2 0.0 2 92 188 281 187 283 0.86 Toprim domain Toprim_3 PF13362.6 95 AAFL01000016_00026 - 623 1.8e-08 34.6 0.2 2 2 0.46 4.8e+02 1.2 0.6 40 85 393 439 381 446 0.77 Toprim domain ATPase PF06745.13 231 AAFL01000016_00026 - 623 7.2e-06 25.5 0.1 1 1 1.9e-07 0.0002 20.8 0.0 16 171 326 478 324 511 0.73 KaiC AAA_22 PF13401.6 137 AAFL01000016_00026 - 623 0.0002 21.6 0.0 1 1 5.5e-07 0.00058 20.2 0.0 6 130 330 470 329 475 0.76 AAA domain NACHT PF05729.12 166 AAFL01000016_00026 - 623 0.0033 17.4 0.0 1 2 1.1 1.1e+03 -0.7 0.0 43 71 6 33 3 43 0.76 NACHT domain NACHT PF05729.12 166 AAFL01000016_00026 - 623 0.0033 17.4 0.0 2 2 2.5e-05 0.027 14.4 0.0 2 28 331 357 330 429 0.89 NACHT domain Toprim_4 PF13662.6 89 AAFL01000016_00026 - 623 0.0078 16.7 0.0 1 1 2.5e-05 0.026 15.0 0.0 47 88 227 267 212 268 0.81 Toprim domain AAA_5 PF07728.14 138 AAFL01000016_00026 - 623 0.018 15.0 0.0 1 1 6e-05 0.063 13.3 0.0 3 26 333 357 332 406 0.82 AAA domain (dynein-related subfamily) Rad51 PF08423.11 255 AAFL01000016_00026 - 623 0.05 12.8 0.0 1 1 0.00051 0.54 9.5 0.0 34 190 326 475 324 494 0.69 Rad51 Toprim PF01751.22 103 AAFL01000016_00026 - 623 0.051 13.8 0.0 1 1 0.00011 0.12 12.7 0.0 51 87 222 258 204 269 0.85 Toprim domain AAA_11 PF13086.6 261 AAFL01000016_00026 - 623 0.065 13.0 0.0 1 2 0.24 2.6e+02 1.2 0.0 50 97 230 271 208 294 0.80 AAA domain AAA_11 PF13086.6 261 AAFL01000016_00026 - 623 0.065 13.0 0.0 2 2 0.00095 1 9.1 0.0 18 43 330 355 320 400 0.76 AAA domain RNA_helicase PF00910.22 107 AAFL01000016_00026 - 623 0.13 12.7 0.0 1 2 2.6 2.8e+03 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 AAFL01000016_00026 - 623 0.13 12.7 0.0 2 2 0.00069 0.73 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase PhoH PF02562.16 205 AAFL01000016_00026 - 623 0.17 11.3 0.0 1 1 0.00034 0.36 10.3 0.0 20 47 330 357 322 362 0.88 PhoH-like protein zf-CHC2 PF01807.20 98 AAFL01000016_00026 - 623 0.18 11.7 0.0 1 1 0.00035 0.37 10.6 0.0 44 88 40 82 8 90 0.84 CHC2 zinc finger DUF2075 PF09848.9 363 AAFL01000016_00026 - 623 0.2 10.8 0.0 1 1 0.00031 0.33 10.2 0.0 2 26 330 354 329 398 0.89 Uncharacterized conserved protein (DUF2075) MobA_MobL PF03389.15 222 AAFL01000016_00027 - 498 3.7e-79 265.5 0.0 1 2 7.3e-82 1.4e-78 263.6 0.0 1 222 17 246 17 246 0.99 MobA/MobL family MobA_MobL PF03389.15 222 AAFL01000016_00027 - 498 3.7e-79 265.5 0.0 2 2 0.85 1.7e+03 -1.5 0.1 7 188 309 339 297 367 0.59 MobA/MobL family Spectrin PF00435.21 105 AAFL01000016_00027 - 498 0.015 15.8 2.4 1 2 9e-05 0.18 12.3 0.2 6 102 269 365 264 368 0.75 Spectrin repeat Spectrin PF00435.21 105 AAFL01000016_00027 - 498 0.015 15.8 2.4 2 2 0.14 2.7e+02 2.1 0.1 33 90 406 463 396 464 0.78 Spectrin repeat Prominin PF05478.11 800 AAFL01000016_00027 - 498 0.02 12.9 1.9 1 1 1.4e-05 0.029 12.4 1.9 542 695 321 479 298 487 0.84 Prominin Snapin_Pallidin PF14712.6 90 AAFL01000016_00027 - 498 0.021 15.2 2.0 1 2 3e-05 0.059 13.8 0.3 14 69 337 393 335 395 0.95 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 AAFL01000016_00027 - 498 0.021 15.2 2.0 2 2 0.69 1.4e+03 -0.2 0.1 36 69 430 465 427 482 0.67 Snapin/Pallidin DUF2408 PF10303.9 135 AAFL01000016_00027 - 498 0.032 14.8 2.4 1 2 3e-05 0.06 13.9 0.3 39 120 312 394 253 396 0.74 Protein of unknown function (DUF2408) DUF2408 PF10303.9 135 AAFL01000016_00027 - 498 0.032 14.8 2.4 2 2 0.56 1.1e+03 0.1 0.1 43 67 429 454 398 489 0.61 Protein of unknown function (DUF2408) Tup_N PF08581.10 77 AAFL01000016_00027 - 498 0.065 13.5 2.3 1 4 2.7 5.3e+03 -2.2 0.0 45 61 158 174 157 177 0.82 Tup N-terminal Tup_N PF08581.10 77 AAFL01000016_00027 - 498 0.065 13.5 2.3 2 4 4.2 8.4e+03 -2.8 0.0 19 48 244 273 229 276 0.72 Tup N-terminal Tup_N PF08581.10 77 AAFL01000016_00027 - 498 0.065 13.5 2.3 3 4 0.0033 6.6 7.1 0.3 28 64 339 375 318 383 0.90 Tup N-terminal Tup_N PF08581.10 77 AAFL01000016_00027 - 498 0.065 13.5 2.3 4 4 0.034 67 3.9 0.0 12 51 422 461 417 467 0.74 Tup N-terminal Mod_r PF07200.13 146 AAFL01000016_00027 - 498 0.65 10.1 8.1 1 3 0.00031 0.62 10.2 0.4 54 101 334 383 293 387 0.76 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 AAFL01000016_00027 - 498 0.65 10.1 8.1 2 3 0.094 1.9e+02 2.1 0.2 69 91 429 451 398 465 0.69 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 AAFL01000016_00027 - 498 0.65 10.1 8.1 3 3 0.14 2.8e+02 1.5 1.6 18 57 451 490 427 498 0.33 Modifier of rudimentary (Mod(r)) protein SOAR PF16533.5 101 AAFL01000016_00027 - 498 1.2 9.1 5.4 1 2 0.00078 1.5 8.8 0.1 50 97 326 373 300 376 0.81 STIM1 Orai1-activating region SOAR PF16533.5 101 AAFL01000016_00027 - 498 1.2 9.1 5.4 2 2 0.35 6.9e+02 0.3 2.1 19 58 398 455 388 490 0.72 STIM1 Orai1-activating region DUF4407 PF14362.6 298 AAFL01000016_00027 - 498 5.1 6.4 8.4 1 1 0.027 53 3.0 8.4 130 235 333 446 233 498 0.58 Domain of unknown function (DUF4407) DUF3847 PF12958.7 81 AAFL01000016_00028 - 119 1.8e-31 108.1 8.2 1 1 5.7e-35 2.6e-31 107.6 8.2 1 81 6 89 6 89 0.98 Protein of unknown function (DUF3847) CENP-Q PF13094.6 168 AAFL01000016_00028 - 119 0.034 14.3 11.9 1 1 9.8e-06 0.044 14.0 11.9 46 96 5 56 2 115 0.74 CENP-Q, a CENPA-CAD centromere complex subunit TPR_8 PF13181.6 34 AAFL01000016_00028 - 119 0.078 13.2 0.1 1 1 4.4e-05 0.2 12.0 0.1 6 27 20 41 16 48 0.89 Tetratricopeptide repeat PHM7_cyt PF14703.6 176 AAFL01000016_00028 - 119 4.2 7.6 7.2 1 1 0.0015 6.6 6.9 7.2 40 87 3 56 1 111 0.75 Cytosolic domain of 10TM putative phosphate transporter CPT PF07931.12 174 AAFL01000016_00029 - 146 4e-06 26.8 0.0 1 1 1.4e-09 4.9e-06 26.5 0.0 59 172 20 137 11 139 0.78 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 130 AAFL01000016_00029 - 146 9.4e-06 26.2 0.0 1 1 3.2e-09 1.2e-05 25.9 0.0 46 122 15 98 1 106 0.77 AAA domain AAA_33 PF13671.6 143 AAFL01000016_00029 - 146 0.00063 19.9 0.0 1 1 2.2e-07 0.0008 19.6 0.0 55 136 30 109 9 112 0.82 AAA domain MKT1_N PF12247.8 90 AAFL01000016_00029 - 146 0.027 14.8 0.0 1 1 1.7e-05 0.063 13.6 0.0 15 52 5 40 3 131 0.90 Temperature dependent protein affecting M2 dsRNA replication AAA_17 PF13207.6 136 AAFL01000016_00029 - 146 0.14 12.6 0.0 1 1 5.4e-05 0.19 12.1 0.0 55 128 27 96 12 103 0.73 AAA domain Fructosamin_kin PF03881.14 288 AAFL01000016_00030 - 89 0.097 11.9 0.0 1 1 5.4e-06 0.097 11.9 0.0 45 94 35 84 7 89 0.70 Fructosamine kinase Ank_3 PF13606.6 31 AAFL01000019_00001 - 304 9.9e-11 40.9 0.3 1 4 0.015 53 4.9 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000019_00001 - 304 9.9e-11 40.9 0.3 2 4 0.024 85 4.2 0.0 10 29 142 160 132 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000019_00001 - 304 9.9e-11 40.9 0.3 3 4 5.6e-07 0.002 18.5 0.0 2 30 168 195 167 196 0.95 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000019_00001 - 304 9.9e-11 40.9 0.3 4 4 0.0018 6.3 7.7 0.0 1 30 206 235 206 236 0.92 Ankyrin repeat Ank_2 PF12796.7 83 AAFL01000019_00001 - 304 1.5e-08 35.1 0.1 1 2 0.49 1.8e+03 -0.4 0.0 4 18 74 92 70 127 0.58 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 AAFL01000019_00001 - 304 1.5e-08 35.1 0.1 2 2 3.2e-11 1.1e-07 32.3 0.0 5 80 142 235 138 238 0.79 Ankyrin repeats (3 copies) Ank_4 PF13637.6 55 AAFL01000019_00001 - 304 4.2e-06 27.2 0.1 1 3 0.81 2.9e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000019_00001 - 304 4.2e-06 27.2 0.1 2 3 4.4e-07 0.0016 19.0 0.0 13 55 146 188 134 188 0.83 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000019_00001 - 304 4.2e-06 27.2 0.1 3 3 0.018 63 4.3 0.0 3 28 209 235 189 245 0.86 Ankyrin repeats (many copies) Ank PF00023.30 32 AAFL01000019_00001 - 304 0.00044 20.6 0.0 1 3 0.019 69 4.1 0.0 10 25 142 158 132 166 0.80 Ankyrin repeat Ank PF00023.30 32 AAFL01000019_00001 - 304 0.00044 20.6 0.0 2 3 0.0042 15 6.2 0.0 2 31 168 198 167 199 0.87 Ankyrin repeat Ank PF00023.30 32 AAFL01000019_00001 - 304 0.00044 20.6 0.0 3 3 0.0051 18 6.0 0.0 15 28 221 235 206 238 0.69 Ankyrin repeat Ank_5 PF13857.6 56 AAFL01000019_00001 - 304 0.066 13.5 0.0 1 3 0.59 2.1e+03 -0.8 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000019_00001 - 304 0.066 13.5 0.0 2 3 0.025 89 3.6 0.0 23 54 141 173 139 175 0.77 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000019_00001 - 304 0.066 13.5 0.0 3 3 0.0063 22 5.5 0.0 15 43 179 207 173 210 0.81 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 AAFL01000019_00002 - 573 2.8e-07 30.8 0.0 1 4 2 1.2e+04 -3.3 0.2 43 74 260 291 257 302 0.68 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 AAFL01000019_00002 - 573 2.8e-07 30.8 0.0 2 4 0.46 2.8e+03 -1.3 1.0 37 64 338 366 335 373 0.73 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 AAFL01000019_00002 - 573 2.8e-07 30.8 0.0 3 4 0.83 5e+03 -2.1 0.2 12 29 378 395 364 399 0.53 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 AAFL01000019_00002 - 573 2.8e-07 30.8 0.0 4 4 4.6e-11 2.8e-07 30.8 0.0 18 84 427 495 403 497 0.76 Restriction endonuclease fold toxin 7 VRR_NUC PF08774.11 108 AAFL01000019_00002 - 573 0.027 14.6 0.0 1 1 1.6e-05 0.093 12.8 0.0 37 96 421 477 379 484 0.73 VRR-NUC domain DUF2239 PF09998.9 184 AAFL01000019_00002 - 573 3.7 7.3 8.1 1 2 0.00027 1.6 8.5 0.6 23 71 46 92 38 103 0.74 Uncharacterized protein conserved in bacteria (DUF2239) DUF2239 PF09998.9 184 AAFL01000019_00002 - 573 3.7 7.3 8.1 2 2 0.027 1.6e+02 2.0 1.7 5 66 260 342 257 381 0.64 Uncharacterized protein conserved in bacteria (DUF2239) Ank_3 PF13606.6 31 AAFL01000019_00003 - 313 1.4e-10 40.5 0.2 1 4 0.015 55 4.8 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000019_00003 - 313 1.4e-10 40.5 0.2 2 4 0.026 92 4.1 0.0 10 29 142 160 134 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000019_00003 - 313 1.4e-10 40.5 0.2 3 4 8e-07 0.0029 18.0 0.0 2 30 168 195 167 196 0.95 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000019_00003 - 313 1.4e-10 40.5 0.2 4 4 0.0017 6.1 7.7 0.0 1 30 206 235 206 236 0.91 Ankyrin repeat Ank_2 PF12796.7 83 AAFL01000019_00003 - 313 8.2e-09 35.9 0.0 1 2 0.54 1.9e+03 -0.5 0.0 4 18 74 92 70 122 0.55 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 AAFL01000019_00003 - 313 8.2e-09 35.9 0.0 2 2 1.5e-11 5.5e-08 33.3 0.0 5 80 142 235 138 238 0.79 Ankyrin repeats (3 copies) Ank_4 PF13637.6 55 AAFL01000019_00003 - 313 1.1e-05 25.9 0.1 1 3 0.84 3e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000019_00003 - 313 1.1e-05 25.9 0.1 2 3 2.9e-07 0.001 19.6 0.0 13 55 146 188 133 188 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000019_00003 - 313 1.1e-05 25.9 0.1 3 3 0.071 2.6e+02 2.4 0.0 3 28 209 235 206 244 0.82 Ankyrin repeats (many copies) Ank PF00023.30 32 AAFL01000019_00003 - 313 5.2e-05 23.5 0.0 1 3 0.022 78 4.0 0.0 10 25 142 158 130 165 0.82 Ankyrin repeat Ank PF00023.30 32 AAFL01000019_00003 - 313 5.2e-05 23.5 0.0 2 3 0.00048 1.7 9.2 0.0 2 31 168 198 167 199 0.87 Ankyrin repeat Ank PF00023.30 32 AAFL01000019_00003 - 313 5.2e-05 23.5 0.0 3 3 0.0049 18 6.0 0.0 15 28 221 235 206 238 0.69 Ankyrin repeat Ank_5 PF13857.6 56 AAFL01000019_00003 - 313 0.028 14.8 0.1 1 4 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000019_00003 - 313 0.028 14.8 0.1 2 4 0.012 42 4.6 0.0 23 54 141 173 139 174 0.87 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000019_00003 - 313 0.028 14.8 0.1 3 4 0.00038 1.4 9.4 0.0 11 46 163 198 153 209 0.81 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000019_00003 - 313 0.028 14.8 0.1 4 4 2.5 9.1e+03 -2.8 0.0 34 53 226 243 222 244 0.56 Ankyrin repeats (many copies) Phage_GPD PF05954.11 304 AAFL01000019_00004 - 882 1.1e-17 64.3 0.0 1 1 5e-21 1.8e-17 63.6 0.0 23 281 74 360 45 376 0.74 Phage late control gene D protein (GPD) DUF2345 PF10106.9 151 AAFL01000019_00004 - 882 0.01 15.7 1.7 1 1 8.1e-06 0.029 14.2 1.7 28 132 775 874 772 878 0.84 Uncharacterized protein conserved in bacteria (DUF2345) Gp5_C PF06715.12 24 AAFL01000019_00004 - 882 0.013 15.6 4.6 1 4 5.3e-05 0.19 11.9 0.1 3 24 657 678 655 686 0.67 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 AAFL01000019_00004 - 882 0.013 15.6 4.6 2 4 0.2 7.2e+02 0.7 0.0 13 24 731 742 730 742 0.89 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 AAFL01000019_00004 - 882 0.013 15.6 4.6 3 4 0.61 2.2e+03 -0.8 0.0 1 18 742 760 742 761 0.83 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 AAFL01000019_00004 - 882 0.013 15.6 4.6 4 4 0.22 7.8e+02 0.6 0.1 2 23 752 773 751 774 0.81 Gp5 C-terminal repeat (3 copies) DUF3540 PF12059.8 199 AAFL01000019_00004 - 882 0.1 12.4 0.8 1 2 0.25 9.1e+02 -0.5 0.0 31 45 534 548 532 555 0.80 Protein of unknown function (DUF3540) DUF3540 PF12059.8 199 AAFL01000019_00004 - 882 0.1 12.4 0.8 2 2 0.00012 0.45 10.3 0.2 60 128 783 850 777 861 0.85 Protein of unknown function (DUF3540) TCL1_MTCP1 PF01840.17 116 AAFL01000019_00004 - 882 0.11 12.2 0.0 1 2 0.053 1.9e+02 1.7 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 AAFL01000019_00004 - 882 0.11 12.2 0.0 2 2 0.00085 3 7.5 0.0 19 52 461 494 452 517 0.80 TCL1/MTCP1 family T6SS_TssG PF06996.11 299 AAFL01000019_00005 - 302 1.9e-47 161.9 0.0 1 1 1.2e-51 2.2e-47 161.8 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG T6SS_TssF PF05947.12 603 AAFL01000019_00006 - 573 2.3e-110 369.9 0.0 1 1 1.5e-114 2.6e-110 369.8 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF GPW_gp25 PF04965.14 95 AAFL01000019_00007 - 130 1.2e-09 37.8 0.0 1 1 2.6e-13 1.5e-09 37.5 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 AAFL01000019_00007 - 130 0.0076 16.1 0.3 1 1 1.6e-06 0.0097 15.8 0.3 93 159 20 87 6 92 0.89 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 AAFL01000019_00007 - 130 0.051 13.0 0.1 1 2 2.1e-05 0.12 11.8 0.1 82 121 5 46 1 64 0.83 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 AAFL01000019_00007 - 130 0.051 13.0 0.1 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 422 AAFL01000019_00008 - 484 1e-169 564.9 0.0 1 1 1.3e-173 1.2e-169 564.6 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 AAFL01000019_00008 - 484 0.096 12.7 0.8 1 3 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 AAFL01000019_00008 - 484 0.096 12.7 0.8 2 3 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 AAFL01000019_00008 - 484 0.096 12.7 0.8 3 3 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 155 AAFL01000019_00009 - 161 1.2e-51 174.6 3.8 1 1 1.5e-55 1.3e-51 174.4 3.8 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 AAFL01000019_00009 - 161 0.082 11.5 0.0 1 1 1.1e-05 0.099 11.2 0.0 171 227 55 111 40 127 0.90 Chitin synthase T6SS_VasJ PF16989.5 255 AAFL01000019_00010 - 415 1.2e-12 47.9 0.0 1 1 3.9e-16 1.7e-12 47.3 0.0 3 153 176 323 174 408 0.84 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 AAFL01000019_00010 - 415 0.00014 22.0 0.2 1 2 1.8e-07 0.0008 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 AAFL01000019_00010 - 415 0.00014 22.0 0.2 2 2 0.31 1.4e+03 -0.6 0.0 47 71 185 209 162 212 0.83 ImpA, N-terminal, type VI secretion system PX PF00787.24 113 AAFL01000019_00010 - 415 0.074 13.0 14.5 1 3 0.00025 1.1 9.2 2.4 31 111 33 130 20 131 0.67 PX domain PX PF00787.24 113 AAFL01000019_00010 - 415 0.074 13.0 14.5 2 3 0.00084 3.8 7.5 0.2 16 112 155 275 132 276 0.68 PX domain PX PF00787.24 113 AAFL01000019_00010 - 415 0.074 13.0 14.5 3 3 0.052 2.3e+02 1.8 0.7 22 97 316 396 296 404 0.70 PX domain TetR_C_24 PF17932.1 114 AAFL01000019_00010 - 415 0.19 12.0 0.0 1 1 8.8e-05 0.4 11.0 0.0 20 68 71 119 62 132 0.87 Tetracyclin repressor-like, C-terminal domain T6SS-SciN PF12790.7 120 AAFL01000019_00011 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 428 AAFL01000019_00012 - 465 1.3e-112 376.6 0.0 1 1 8.6e-117 1.5e-112 376.4 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 205 AAFL01000019_00013 - 257 3.6e-35 121.5 0.0 1 1 2.3e-39 4.2e-35 121.4 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_HCP PF05638.12 129 AAFL01000019_00014 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 259 AAFL01000019_00015 - 1175 6.2e-41 140.5 0.0 1 1 4.7e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 AAFL01000019_00015 - 1175 5.9e-40 137.0 0.5 1 1 4.7e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 AAFL01000019_00015 - 1175 3.5e-26 92.4 2.0 1 1 2.4e-29 5.3e-26 91.8 2.0 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 AAFL01000019_00015 - 1175 0.0003 20.7 0.0 1 2 1e-05 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 AAFL01000019_00015 - 1175 0.0003 20.7 0.0 2 2 0.054 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 AAFL01000019_00015 - 1175 0.0011 19.0 0.1 1 2 1.9e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 AAFL01000019_00015 - 1175 0.0011 19.0 0.1 2 2 4.7 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 AAFL01000019_00015 - 1175 0.0036 16.9 5.2 1 3 1.7e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 AAFL01000019_00015 - 1175 0.0036 16.9 5.2 2 3 0.089 2e+02 1.5 0.1 41 78 451 488 431 588 0.81 O-Antigen ligase Wzy_C PF04932.15 155 AAFL01000019_00015 - 1175 0.0036 16.9 5.2 3 3 0.087 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 AAFL01000019_00015 - 1175 0.055 13.2 0.1 1 2 0.00019 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 AAFL01000019_00015 - 1175 0.055 13.2 0.1 2 2 0.83 1.8e+03 -1.3 0.0 22 37 841 856 831 873 0.75 P-loop containing region of AAA domain DrrA_P4M PF14860.6 103 AAFL01000019_00015 - 1175 0.4 10.6 5.8 1 2 5.2 1.2e+04 -3.8 0.2 58 91 485 518 476 521 0.55 DrrA phosphatidylinositol 4-phosphate binding domain DrrA_P4M PF14860.6 103 AAFL01000019_00015 - 1175 0.4 10.6 5.8 2 2 4.9e-05 0.11 12.3 1.4 12 58 541 587 530 617 0.85 DrrA phosphatidylinositol 4-phosphate binding domain FHA PF00498.26 69 AAFL01000019_00016 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 AAFL01000019_00016 - 299 0.0018 18.5 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 AAFL01000019_00016 - 299 0.0018 18.5 0.0 2 2 2 1.2e+04 -3.3 0.0 31 56 199 224 199 226 0.79 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 AAFL01000019_00016 - 299 0.066 13.6 2.7 1 2 0.047 2.8e+02 2.0 0.1 18 57 107 146 105 149 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 AAFL01000019_00016 - 299 0.066 13.6 2.7 2 2 0.00011 0.66 10.4 0.7 21 80 151 210 146 215 0.91 Ferredoxin-fold anticodon binding domain UvrA_DNA-bind PF17755.1 110 AAFL01000020_00001 - 299 0.00041 20.7 0.5 1 2 1.1e-05 0.19 12.1 0.1 24 65 32 73 19 86 0.82 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 AAFL01000020_00001 - 299 0.00041 20.7 0.5 2 2 0.00055 9.8 6.6 0.0 15 33 92 109 88 128 0.76 UvrA DNA-binding domain Y1_Tnp PF01797.16 121 AAFL01000020_00004 - 77 1.9e-13 50.5 2.2 1 1 1.3e-17 2.3e-13 50.3 2.2 2 57 13 70 12 76 0.89 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 69 AAFL01000020_00005 - 415 2.2e-22 78.7 1.3 1 1 2.3e-25 4.6e-22 77.7 1.3 1 69 324 393 324 393 0.98 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 AAFL01000020_00005 - 415 5.9e-13 49.1 2.4 1 1 7.1e-16 1.4e-12 47.9 2.4 10 118 187 302 172 304 0.76 Probable transposase HTH_OrfB_IS605 PF12323.8 47 AAFL01000020_00005 - 415 3.8e-10 39.1 2.8 1 1 4.2e-13 8.4e-10 38.0 2.8 1 46 1 47 1 48 0.95 Helix-turn-helix domain HypA PF01155.19 112 AAFL01000020_00005 - 415 0.022 14.8 0.4 1 1 2.7e-05 0.053 13.5 0.4 19 96 298 380 281 391 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 4_1_CTD PF05902.13 107 AAFL01000020_00005 - 415 0.058 13.5 0.1 1 3 0.00018 0.35 11.0 0.0 35 96 47 108 16 115 0.83 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 AAFL01000020_00005 - 415 0.058 13.5 0.1 2 3 2 4e+03 -2.1 0.0 25 37 178 190 158 231 0.62 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 AAFL01000020_00005 - 415 0.058 13.5 0.1 3 3 2.8 5.5e+03 -2.5 0.0 51 66 333 348 331 355 0.83 4.1 protein C-terminal domain (CTD) Zn_ribbon_17 PF17120.5 58 AAFL01000020_00005 - 415 0.071 12.7 0.5 1 1 6.8e-05 0.14 11.8 0.5 4 32 351 384 348 395 0.81 Zinc-ribbon, C4HC2 type DUF1161 PF06649.12 52 AAFL01000020_00005 - 415 0.12 12.6 0.8 1 1 0.00016 0.32 11.2 0.8 3 32 270 299 269 311 0.89 Protein of unknown function (DUF1161) Prok-RING_1 PF14446.6 54 AAFL01000020_00005 - 415 0.16 11.9 3.2 1 1 0.00018 0.36 10.8 3.2 2 33 349 383 348 388 0.83 Prokaryotic RING finger family 1 Spt4 PF06093.13 77 AAFL01000020_00005 - 415 0.82 9.8 4.4 1 2 3.3 6.5e+03 -2.7 0.0 55 70 78 93 76 98 0.76 Spt4/RpoE2 zinc finger Spt4 PF06093.13 77 AAFL01000020_00005 - 415 0.82 9.8 4.4 2 2 0.00041 0.81 9.8 2.2 2 30 352 382 351 393 0.79 Spt4/RpoE2 zinc finger Fic PF02661.18 97 AAFL01000020_00006 - 264 8.4e-24 84.3 0.1 1 1 2.3e-27 2.1e-23 83.0 0.1 2 96 95 191 94 192 0.96 Fic/DOC family S_layer_C PF05124.12 220 AAFL01000020_00006 - 264 6.6 6.6 8.7 1 2 6.2e-05 0.56 10.2 2.0 12 114 2 116 1 132 0.69 S-layer like family, C-terminal region S_layer_C PF05124.12 220 AAFL01000020_00006 - 264 6.6 6.6 8.7 2 2 0.065 5.8e+02 0.3 0.6 158 182 230 253 229 260 0.77 S-layer like family, C-terminal region Y1_Tnp PF01797.16 121 AAFL01000020_00007 - 77 1.9e-13 50.5 2.2 1 1 1.3e-17 2.3e-13 50.3 2.2 2 57 13 70 12 76 0.89 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 69 AAFL01000020_00008 - 415 2.2e-22 78.7 1.3 1 1 2.3e-25 4.6e-22 77.7 1.3 1 69 324 393 324 393 0.98 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 AAFL01000020_00008 - 415 5.9e-13 49.1 2.4 1 1 7.1e-16 1.4e-12 47.9 2.4 10 118 187 302 172 304 0.76 Probable transposase HTH_OrfB_IS605 PF12323.8 47 AAFL01000020_00008 - 415 3.8e-10 39.1 2.8 1 1 4.2e-13 8.4e-10 38.0 2.8 1 46 1 47 1 48 0.95 Helix-turn-helix domain HypA PF01155.19 112 AAFL01000020_00008 - 415 0.022 14.8 0.4 1 1 2.7e-05 0.053 13.5 0.4 19 96 298 380 281 391 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 4_1_CTD PF05902.13 107 AAFL01000020_00008 - 415 0.058 13.5 0.1 1 3 0.00018 0.35 11.0 0.0 35 96 47 108 16 115 0.83 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 AAFL01000020_00008 - 415 0.058 13.5 0.1 2 3 2 4e+03 -2.1 0.0 25 37 178 190 158 231 0.62 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 AAFL01000020_00008 - 415 0.058 13.5 0.1 3 3 2.8 5.5e+03 -2.5 0.0 51 66 333 348 331 355 0.83 4.1 protein C-terminal domain (CTD) Zn_ribbon_17 PF17120.5 58 AAFL01000020_00008 - 415 0.071 12.7 0.5 1 1 6.8e-05 0.14 11.8 0.5 4 32 351 384 348 395 0.81 Zinc-ribbon, C4HC2 type DUF1161 PF06649.12 52 AAFL01000020_00008 - 415 0.12 12.6 0.8 1 1 0.00016 0.32 11.2 0.8 3 32 270 299 269 311 0.89 Protein of unknown function (DUF1161) Prok-RING_1 PF14446.6 54 AAFL01000020_00008 - 415 0.16 11.9 3.2 1 1 0.00018 0.36 10.8 3.2 2 33 349 383 348 388 0.83 Prokaryotic RING finger family 1 Spt4 PF06093.13 77 AAFL01000020_00008 - 415 0.82 9.8 4.4 1 2 3.3 6.5e+03 -2.7 0.0 55 70 78 93 76 98 0.76 Spt4/RpoE2 zinc finger Spt4 PF06093.13 77 AAFL01000020_00008 - 415 0.82 9.8 4.4 2 2 0.00041 0.81 9.8 2.2 2 30 352 382 351 393 0.79 Spt4/RpoE2 zinc finger DUF3492 PF11997.8 268 AAFL01000020_00009 - 684 0.2 11.4 2.9 1 1 5.7e-05 0.51 10.0 2.9 33 164 64 199 59 210 0.76 Domain of unknown function (DUF3492) CLZ PF16526.5 71 AAFL01000020_00009 - 684 1.1 9.7 4.8 1 2 0.01 92 3.5 0.6 30 58 122 150 104 162 0.78 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CLZ PF16526.5 71 AAFL01000020_00009 - 684 1.1 9.7 4.8 2 2 0.0012 11 6.4 0.2 22 56 530 564 522 570 0.86 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Lipase_3 PF01764.25 142 AAFL01000020_00010 - 1247 2.5e-07 30.7 0.0 1 1 1.9e-10 8.6e-07 28.9 0.0 39 105 189 249 156 265 0.70 Lipase (class 3) PGAP1 PF07819.13 231 AAFL01000020_00010 - 1247 0.00063 19.5 2.0 1 3 5.6e-07 0.0025 17.6 0.0 63 133 187 254 143 315 0.75 PGAP1-like protein PGAP1 PF07819.13 231 AAFL01000020_00010 - 1247 0.00063 19.5 2.0 2 3 0.76 3.4e+03 -2.5 0.7 50 95 539 579 506 580 0.68 PGAP1-like protein PGAP1 PF07819.13 231 AAFL01000020_00010 - 1247 0.00063 19.5 2.0 3 3 0.21 9.6e+02 -0.7 0.0 164 192 998 1026 987 1047 0.80 PGAP1-like protein Abhydrolase_6 PF12697.7 220 AAFL01000020_00010 - 1247 0.084 13.5 0.0 1 1 2.9e-05 0.13 12.8 0.0 62 86 201 228 162 261 0.74 Alpha/beta hydrolase family Thioesterase PF00975.20 231 AAFL01000020_00010 - 1247 0.18 11.9 0.0 1 1 9.8e-05 0.44 10.6 0.0 59 95 203 241 182 259 0.72 Thioesterase domain CitMHS PF03600.16 300 AAFL01000020_00011 - 208 0.022 14.0 0.5 1 1 7.1e-06 0.025 13.8 0.5 147 214 4 101 1 117 0.79 Citrate transporter Ion_trans PF00520.31 245 AAFL01000020_00011 - 208 0.88 8.7 13.1 1 1 0.00036 1.3 8.2 13.1 127 183 5 52 1 100 0.81 Ion transport protein DUF3810 PF12725.7 310 AAFL01000020_00011 - 208 1.1 8.6 11.5 1 1 0.00036 1.3 8.3 11.5 19 86 8 75 1 178 0.59 Protein of unknown function (DUF3810) Spo7 PF03907.13 221 AAFL01000020_00011 - 208 1.9 7.9 6.7 1 1 0.00087 3.1 7.2 6.7 33 91 16 69 12 178 0.68 Spo7-like protein DHHC PF01529.20 134 AAFL01000020_00011 - 208 9.4 6.3 11.7 1 1 0.0049 18 5.5 11.7 47 111 7 68 3 96 0.67 DHHC palmitoyltransferase DUF3810 PF12725.7 310 AAFL01000020_00013 - 212 0.0022 17.4 5.2 1 1 5.3e-07 0.0024 17.3 5.2 19 117 8 106 1 185 0.59 Protein of unknown function (DUF3810) CitMHS PF03600.16 300 AAFL01000020_00013 - 212 0.036 13.3 0.3 1 1 7.3e-06 0.033 13.4 0.3 147 221 4 67 1 158 0.79 Citrate transporter Yip1 PF04893.17 172 AAFL01000020_00013 - 212 0.2 11.4 5.8 1 1 6.4e-05 0.29 10.8 5.8 65 120 7 68 2 76 0.84 Yip1 domain Spo7 PF03907.13 221 AAFL01000020_00013 - 212 2.1 7.7 10.6 1 1 0.0011 4.7 6.6 10.2 33 92 16 70 12 176 0.75 Spo7-like protein APH PF01636.23 240 AAFL01000021_00001 - 151 3.6e-07 30.4 0.0 1 1 2.2e-11 3.9e-07 30.2 0.0 99 220 5 123 2 144 0.82 Phosphotransferase enzyme family Peptidase_C15 PF01470.17 202 AAFL01000021_00002 - 139 1.3e-51 175.6 0.1 1 1 8.3e-56 1.5e-51 175.5 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase APH PF01636.23 240 AAFL01000021_00003 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 AAFL01000021_00003 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 AAFL01000021_00003 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 AAFL01000021_00003 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 AAFL01000021_00003 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 AAFL01000021_00003 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase AAA_18 PF13238.6 130 AAFL01000021_00004 - 181 3.4e-14 53.5 0.0 1 1 1.1e-16 4.5e-14 53.1 0.0 1 124 7 135 7 141 0.78 AAA domain CPT PF07931.12 174 AAFL01000021_00004 - 181 5e-10 39.5 0.0 1 1 2.4e-12 9.9e-10 38.5 0.0 1 172 4 172 4 174 0.82 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 AAFL01000021_00004 - 181 1.2e-09 38.5 0.0 1 1 4.4e-12 1.8e-09 37.9 0.0 2 136 7 144 6 146 0.80 AAA domain Zeta_toxin PF06414.12 199 AAFL01000021_00004 - 181 1.5e-08 34.1 0.0 1 1 7.8e-11 3.2e-08 33.1 0.0 18 162 6 140 2 173 0.80 Zeta toxin AAA_28 PF13521.6 163 AAFL01000021_00004 - 181 2.9e-06 27.6 0.1 1 2 2.7e-08 1.1e-05 25.7 0.0 2 65 7 74 6 85 0.72 AAA domain AAA_28 PF13521.6 163 AAFL01000021_00004 - 181 2.9e-06 27.6 0.1 2 2 3.7 1.5e+03 -0.7 0.1 140 140 136 136 96 177 0.51 AAA domain AAA PF00004.29 132 AAFL01000021_00004 - 181 5.6e-06 26.8 0.0 1 2 1.3e-07 5.5e-05 23.6 0.0 2 25 8 31 7 84 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 AAFL01000021_00004 - 181 5.6e-06 26.8 0.0 2 2 1.2 4.8e+02 1.1 0.0 104 131 108 135 92 136 0.83 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 137 AAFL01000021_00004 - 181 2e-05 24.9 0.0 1 2 1.4e-07 5.9e-05 23.4 0.0 4 43 3 42 1 89 0.84 AAA domain AAA_22 PF13401.6 137 AAFL01000021_00004 - 181 2e-05 24.9 0.0 2 2 4 1.6e+03 -0.7 0.0 62 82 121 140 90 178 0.65 AAA domain AAA_14 PF13173.6 131 AAFL01000021_00004 - 181 5.9e-05 23.1 0.0 1 1 2.2e-07 8.8e-05 22.5 0.0 2 127 4 141 3 145 0.74 AAA domain AAA_17 PF13207.6 136 AAFL01000021_00004 - 181 0.00012 22.5 0.1 1 1 1.3e-06 0.00052 20.5 0.1 1 128 10 131 10 139 0.74 AAA domain AAA_16 PF13191.6 170 AAFL01000021_00004 - 181 0.00031 21.2 0.0 1 1 1.1e-06 0.00043 20.7 0.0 22 61 2 42 1 127 0.81 AAA ATPase domain DUF2075 PF09848.9 363 AAFL01000021_00004 - 181 0.0012 18.2 0.2 1 1 4.3e-06 0.0018 17.6 0.1 2 27 5 32 4 68 0.83 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 146 AAFL01000021_00004 - 181 0.0017 18.7 0.0 1 1 8.7e-06 0.0035 17.7 0.0 9 39 3 33 1 49 0.84 AAA domain KTI12 PF08433.10 272 AAFL01000021_00004 - 181 0.0019 17.7 0.0 1 2 9.3e-06 0.0038 16.7 0.0 3 42 6 44 5 87 0.77 Chromatin associated protein KTI12 KTI12 PF08433.10 272 AAFL01000021_00004 - 181 0.0019 17.7 0.0 2 2 5.4 2.2e+03 -2.2 0.0 263 263 137 137 104 174 0.57 Chromatin associated protein KTI12 AAA_30 PF13604.6 192 AAFL01000021_00004 - 181 0.0023 17.7 0.2 1 1 9.6e-06 0.0039 16.9 0.2 17 40 3 26 1 39 0.84 AAA domain ABC_tran PF00005.27 137 AAFL01000021_00004 - 181 0.0029 18.1 0.1 1 1 7.3e-06 0.003 18.1 0.0 9 51 2 43 1 170 0.86 ABC transporter AAA_24 PF13479.6 197 AAFL01000021_00004 - 181 0.0039 16.9 0.1 1 1 1e-05 0.0042 16.8 0.1 3 32 5 39 3 163 0.82 AAA domain APS_kinase PF01583.20 158 AAFL01000021_00004 - 181 0.004 17.1 0.0 1 2 0.00012 0.049 13.5 0.0 1 79 3 84 3 124 0.66 Adenylylsulphate kinase APS_kinase PF01583.20 158 AAFL01000021_00004 - 181 0.004 17.1 0.0 2 2 0.42 1.7e+02 2.0 0.0 44 74 118 148 97 155 0.84 Adenylylsulphate kinase TIP49 PF06068.13 351 AAFL01000021_00004 - 181 0.0061 15.8 0.2 1 2 4.7e-05 0.019 14.2 0.0 50 75 4 29 1 46 0.81 TIP49 P-loop domain TIP49 PF06068.13 351 AAFL01000021_00004 - 181 0.0061 15.8 0.2 2 2 1.7 7e+02 -0.8 0.1 148 178 126 156 105 172 0.75 TIP49 P-loop domain ATPase PF06745.13 231 AAFL01000021_00004 - 181 0.0075 15.6 0.7 1 2 3.9e-05 0.016 14.6 0.1 18 38 3 23 1 39 0.87 KaiC ATPase PF06745.13 231 AAFL01000021_00004 - 181 0.0075 15.6 0.7 2 2 2.7 1.1e+03 -1.3 0.1 98 129 123 159 100 175 0.49 KaiC T2SSE PF00437.20 273 AAFL01000021_00004 - 181 0.011 14.8 0.0 1 1 4.1e-05 0.017 14.2 0.0 130 154 5 29 1 71 0.87 Type II/IV secretion system protein NTPase_1 PF03266.15 168 AAFL01000021_00004 - 181 0.012 15.5 0.5 1 2 8.3e-05 0.034 14.1 0.2 2 22 7 27 6 37 0.88 NTPase NTPase_1 PF03266.15 168 AAFL01000021_00004 - 181 0.012 15.5 0.5 2 2 2.6 1.1e+03 -0.6 0.0 117 136 99 118 59 172 0.59 NTPase Viral_helicase1 PF01443.18 234 AAFL01000021_00004 - 181 0.017 14.9 0.0 1 1 6.8e-05 0.028 14.2 0.0 1 60 7 75 7 88 0.65 Viral (Superfamily 1) RNA helicase ATPase_2 PF01637.18 233 AAFL01000021_00004 - 181 0.018 14.9 0.1 1 2 0.0025 1 9.2 0.0 19 54 3 38 1 66 0.80 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 AAFL01000021_00004 - 181 0.018 14.9 0.1 2 2 0.1 41 4.0 0.1 48 97 102 150 92 179 0.53 ATPase domain predominantly from Archaea SRP54 PF00448.22 196 AAFL01000021_00004 - 181 0.019 14.6 0.0 1 1 8.9e-05 0.036 13.7 0.0 3 40 6 42 4 46 0.81 SRP54-type protein, GTPase domain AAA_11 PF13086.6 261 AAFL01000021_00004 - 181 0.022 14.6 0.0 1 2 0.00017 0.069 12.9 0.0 16 41 3 28 1 74 0.83 AAA domain AAA_11 PF13086.6 261 AAFL01000021_00004 - 181 0.022 14.6 0.0 2 2 1.9 7.6e+02 -0.3 0.0 96 122 116 151 81 178 0.53 AAA domain Ploopntkinase1 PF18748.1 196 AAFL01000021_00004 - 181 0.022 14.3 0.0 1 2 0.23 94 2.4 0.0 16 41 3 29 1 41 0.78 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 AAFL01000021_00004 - 181 0.022 14.3 0.0 2 2 0.0011 0.46 10.0 0.0 93 164 72 143 56 154 0.81 P-loop Nucleotide Kinase1 RuvB_N PF05496.12 159 AAFL01000021_00004 - 181 0.023 14.5 0.1 1 2 0.0002 0.08 12.7 0.0 36 59 7 30 3 46 0.86 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 AAFL01000021_00004 - 181 0.023 14.5 0.1 2 2 3.7 1.5e+03 -1.2 0.0 96 114 111 129 104 167 0.72 Holliday junction DNA helicase RuvB P-loop domain MKT1_N PF12247.8 90 AAFL01000021_00004 - 181 0.027 14.8 0.0 1 1 0.00025 0.1 13.0 0.0 14 52 39 75 35 149 0.89 Temperature dependent protein affecting M2 dsRNA replication AAA_25 PF13481.6 194 AAFL01000021_00004 - 181 0.028 14.0 0.1 1 2 0.00017 0.071 12.7 0.1 32 54 3 25 1 28 0.88 AAA domain AAA_25 PF13481.6 194 AAFL01000021_00004 - 181 0.028 14.0 0.1 2 2 8.4 3.4e+03 -2.6 0.0 119 174 57 74 31 84 0.49 AAA domain DnaB_C PF03796.15 255 AAFL01000021_00004 - 181 0.039 13.3 0.4 1 2 0.00021 0.084 12.2 0.0 17 47 2 32 1 41 0.84 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 AAFL01000021_00004 - 181 0.039 13.3 0.4 2 2 3.1 1.3e+03 -1.5 0.1 84 91 136 143 98 179 0.39 DnaB-like helicase C terminal domain NB-ARC PF00931.22 252 AAFL01000021_00004 - 181 0.04 13.1 0.0 1 1 0.00018 0.073 12.3 0.0 21 47 5 30 1 46 0.84 NB-ARC domain Hydin_ADK PF17213.3 198 AAFL01000021_00004 - 181 0.041 14.2 1.1 1 1 0.00013 0.054 13.8 0.2 2 22 7 27 6 31 0.92 Hydin Adenylate kinase-like domain NACHT PF05729.12 166 AAFL01000021_00004 - 181 0.042 13.8 0.0 1 1 0.00017 0.07 13.0 0.0 1 31 5 35 5 74 0.75 NACHT domain ArsA_ATPase PF02374.15 305 AAFL01000021_00004 - 181 0.047 12.9 0.1 1 2 0.00024 0.099 11.8 0.0 2 44 5 46 4 84 0.80 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 AAFL01000021_00004 - 181 0.047 12.9 0.1 2 2 4.8 2e+03 -2.3 0.0 162 172 137 147 110 174 0.48 Anion-transporting ATPase Rad17 PF03215.15 186 AAFL01000021_00004 - 181 0.051 13.5 0.0 1 2 0.0004 0.16 11.9 0.0 45 69 4 28 1 41 0.87 Rad17 P-loop domain Rad17 PF03215.15 186 AAFL01000021_00004 - 181 0.051 13.5 0.0 2 2 3.8 1.5e+03 -1.1 0.0 113 146 110 145 96 169 0.62 Rad17 P-loop domain RNA_helicase PF00910.22 107 AAFL01000021_00004 - 181 0.055 13.9 0.0 1 1 0.00023 0.095 13.1 0.0 1 35 7 42 7 77 0.71 RNA helicase Sigma54_activat PF00158.26 168 AAFL01000021_00004 - 181 0.056 13.2 0.0 1 1 0.00025 0.1 12.3 0.0 25 67 7 56 1 89 0.73 Sigma-54 interaction domain AAA_7 PF12775.7 181 AAFL01000021_00004 - 181 0.069 12.7 0.5 1 1 0.0003 0.12 11.9 0.0 31 64 2 35 1 47 0.83 P-loop containing dynein motor region IstB_IS21 PF01695.17 178 AAFL01000021_00004 - 181 0.076 12.7 0.1 1 2 0.00042 0.17 11.6 0.0 48 70 5 27 1 47 0.84 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 AAFL01000021_00004 - 181 0.076 12.7 0.1 2 2 7.9 3.2e+03 -2.3 0.0 72 101 100 130 97 137 0.52 IstB-like ATP binding protein PhoH PF02562.16 205 AAFL01000021_00004 - 181 0.096 12.1 0.1 1 1 0.00045 0.18 11.2 0.1 18 43 3 28 1 36 0.81 PhoH-like protein Ploopntkinase3 PF18751.1 185 AAFL01000021_00004 - 181 0.14 12.0 0.5 1 2 0.00099 0.4 10.6 0.0 3 33 4 34 1 49 0.80 P-loop Nucleotide Kinase3 Ploopntkinase3 PF18751.1 185 AAFL01000021_00004 - 181 0.14 12.0 0.5 2 2 5.6 2.3e+03 -1.7 0.0 108 144 101 138 94 156 0.66 P-loop Nucleotide Kinase3 AAA_3 PF07726.11 131 AAFL01000021_00004 - 181 0.15 11.9 0.1 1 2 0.0011 0.43 10.4 0.0 2 29 7 34 6 43 0.82 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 131 AAFL01000021_00004 - 181 0.15 11.9 0.1 2 2 6.2 2.5e+03 -1.8 0.0 76 91 130 145 117 171 0.68 ATPase family associated with various cellular activities (AAA) PG_binding_3 PF09374.10 76 AAFL01000021_00004 - 181 0.18 12.1 0.4 1 2 0.71 2.9e+02 1.8 0.0 26 63 17 57 8 78 0.70 Predicted Peptidoglycan domain PG_binding_3 PF09374.10 76 AAFL01000021_00004 - 181 0.18 12.1 0.4 2 2 0.0054 2.2 8.6 0.0 13 28 78 93 65 135 0.82 Predicted Peptidoglycan domain Cytidylate_kin2 PF13189.6 179 AAFL01000021_00004 - 181 0.29 11.2 2.2 1 2 0.04 16 5.6 0.2 1 22 6 27 6 33 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 AAFL01000021_00004 - 181 0.29 11.2 2.2 2 2 0.041 17 5.5 0.1 108 147 99 138 39 143 0.80 Cytidylate kinase-like family TnpV PF14198.6 112 AAFL01000021_00005 - 114 3.3e-41 139.8 0.5 1 1 2e-45 3.6e-41 139.6 0.5 1 112 4 112 4 112 0.99 Transposon-encoded protein TnpV DUF4368 PF14287.6 67 AAFL01000021_00006 - 628 3.6e-23 81.6 2.1 1 1 3.9e-26 1.2e-22 80.0 2.1 2 66 472 537 471 538 0.92 Domain of unknown function (DUF4368) Recombinase PF07508.13 104 AAFL01000021_00006 - 628 3.6e-22 78.7 0.7 1 2 2.6 7.8e+03 -2.7 0.0 8 32 133 157 132 173 0.80 Recombinase Recombinase PF07508.13 104 AAFL01000021_00006 - 628 3.6e-22 78.7 0.7 2 2 4.6e-25 1.4e-21 76.9 0.2 1 101 183 303 183 305 0.96 Recombinase Resolvase PF00239.21 146 AAFL01000021_00006 - 628 5.2e-21 75.3 0.1 1 3 1.7e-24 5.2e-21 75.3 0.1 2 146 9 161 8 161 0.90 Resolvase, N terminal domain Resolvase PF00239.21 146 AAFL01000021_00006 - 628 5.2e-21 75.3 0.1 2 3 0.18 5.4e+02 0.6 2.3 21 62 380 422 375 521 0.78 Resolvase, N terminal domain Resolvase PF00239.21 146 AAFL01000021_00006 - 628 5.2e-21 75.3 0.1 3 3 1.2 3.6e+03 -2.1 1.6 123 142 579 598 549 602 0.65 Resolvase, N terminal domain Zn_ribbon_recom PF13408.6 58 AAFL01000021_00006 - 628 1.4e-12 47.9 2.6 1 1 1.5e-15 4.3e-12 46.3 2.6 1 58 318 380 318 380 0.84 Recombinase zinc beta ribbon domain Xrn1_D3 PF18194.1 71 AAFL01000021_00006 - 628 0.14 12.2 0.7 1 2 0.00013 0.38 10.9 0.1 2 28 376 402 375 412 0.91 Exoribonuclease 1 Domain-3 Xrn1_D3 PF18194.1 71 AAFL01000021_00006 - 628 0.14 12.2 0.7 2 2 4 1.2e+04 -3.5 0.1 33 50 464 481 458 484 0.74 Exoribonuclease 1 Domain-3 Snapin_Pallidin PF14712.6 90 AAFL01000021_00006 - 628 1.2 9.6 6.0 1 3 6 1.8e+04 -3.8 0.0 33 51 29 47 24 54 0.68 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 AAFL01000021_00006 - 628 1.2 9.6 6.0 2 3 0.0043 13 6.3 0.2 46 78 397 429 383 435 0.78 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 AAFL01000021_00006 - 628 1.2 9.6 6.0 3 3 0.0082 24 5.4 0.2 26 56 455 486 452 504 0.82 Snapin/Pallidin IMS PF00817.20 150 AAFL01000021_00007 - 126 1.1e-06 28.7 0.1 1 1 1.7e-10 3e-06 27.3 0.1 1 80 10 122 10 126 0.71 impB/mucB/samB family HTH_3 PF01381.22 55 AAFL01000021_00009 - 44 8.4e-07 29.0 0.0 1 1 1e-09 9.1e-07 28.9 0.0 1 33 9 41 9 44 0.95 Helix-turn-helix HTH_26 PF13443.6 63 AAFL01000021_00009 - 44 0.00022 21.6 0.0 1 1 2.7e-07 0.00024 21.4 0.0 2 34 9 41 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 AAFL01000021_00009 - 44 0.0007 19.1 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding HTH_19 PF12844.7 65 AAFL01000021_00009 - 44 0.0012 18.8 0.0 1 1 1.4e-06 0.0013 18.8 0.0 4 37 9 42 7 44 0.91 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 AAFL01000021_00009 - 44 0.002 18.0 0.1 1 1 2.6e-06 0.0023 17.7 0.1 1 32 9 41 9 43 0.84 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 AAFL01000021_00009 - 44 0.002 17.9 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 AAFL01000021_00009 - 44 0.0035 17.4 0.3 1 1 5.7e-06 0.0052 16.8 0.3 25 46 1 22 1 41 0.89 ENT domain HTH_31 PF13560.6 64 AAFL01000021_00009 - 44 0.0089 16.4 0.0 1 1 1.2e-05 0.011 16.1 0.0 12 38 15 41 9 43 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 AAFL01000021_00009 - 44 0.009 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 AAFL01000021_00009 - 44 0.0098 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 AAFL01000021_00009 - 44 0.013 14.9 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 AAFL01000021_00009 - 44 0.019 14.9 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 AAFL01000021_00009 - 44 0.02 14.7 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain HTH_AsnC-type PF13404.6 42 AAFL01000021_00009 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain Phage_CI_repr PF07022.13 65 AAFL01000021_00009 - 44 0.03 14.4 0.0 1 1 3.7e-05 0.033 14.3 0.0 3 33 9 38 7 41 0.84 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4 PF04545.16 50 AAFL01000021_00009 - 44 0.034 13.7 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 HTH_17 PF12728.7 51 AAFL01000021_00009 - 44 0.081 13.1 0.1 1 2 0.018 16 5.8 0.0 4 16 9 21 9 26 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 AAFL01000021_00009 - 44 0.081 13.1 0.1 2 2 0.0085 7.6 6.8 0.0 6 26 22 42 19 44 0.78 Helix-turn-helix domain MerR PF00376.23 38 AAFL01000021_00009 - 44 0.085 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 AAFL01000021_00009 - 44 0.085 12.7 0.0 2 2 0.01 9.3 6.1 0.0 4 17 22 35 21 41 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 AAFL01000021_00009 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 AAFL01000021_00009 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain DUF5601 PF18151.1 65 AAFL01000021_00011 - 118 0.038 14.3 0.2 1 1 7e-06 0.063 13.6 0.2 14 55 5 47 1 48 0.88 Domain of unknown function (DUF5601) DUF1640 PF07798.11 175 AAFL01000021_00011 - 118 0.58 10.2 7.1 1 2 1.4e-05 0.12 12.4 2.4 52 100 26 77 9 86 0.83 Protein of unknown function (DUF1640) DUF1640 PF07798.11 175 AAFL01000021_00011 - 118 0.58 10.2 7.1 2 2 0.068 6.1e+02 0.3 0.3 148 169 82 103 74 110 0.65 Protein of unknown function (DUF1640) Sigma_reg_N PF13800.6 90 AAFL01000021_00012 - 37 0.13 12.6 0.3 1 1 7.1e-06 0.13 12.6 0.3 15 44 5 34 4 37 0.89 Sigma factor regulator N-terminal CCDC-167 PF15188.6 84 AAFL01000021_00013 - 137 0.002 18.4 0.4 1 1 1.1e-06 0.0033 17.7 0.4 37 79 77 119 21 121 0.77 Coiled-coil domain-containing protein 167 DUF3461 PF11944.8 125 AAFL01000021_00013 - 137 0.015 15.4 3.5 1 1 1.3e-05 0.04 14.0 3.5 23 124 7 100 2 101 0.83 Protein of unknown function (DUF3461) HSBP1 PF06825.12 51 AAFL01000021_00013 - 137 0.033 14.0 0.1 1 2 0.027 80 3.2 0.0 28 43 61 76 46 78 0.86 Heat shock factor binding protein 1 HSBP1 PF06825.12 51 AAFL01000021_00013 - 137 0.033 14.0 0.1 2 2 0.00073 2.2 8.2 0.0 17 42 79 104 77 109 0.83 Heat shock factor binding protein 1 Streptin-Immun PF11083.8 93 AAFL01000021_00013 - 137 0.052 14.0 0.6 1 2 0.35 1.1e+03 0.2 0.1 63 82 40 59 20 68 0.62 Lantibiotic streptin immunity protein Streptin-Immun PF11083.8 93 AAFL01000021_00013 - 137 0.052 14.0 0.6 2 2 6.7e-05 0.2 12.1 0.1 42 81 68 107 63 115 0.87 Lantibiotic streptin immunity protein DUF4164 PF13747.6 89 AAFL01000021_00013 - 137 0.1 12.9 0.4 1 1 0.00011 0.32 11.3 0.2 14 42 77 106 62 109 0.77 Domain of unknown function (DUF4164) Trimer_CC PF08954.11 52 AAFL01000021_00013 - 137 0.14 11.7 0.1 1 2 0.0033 9.8 5.8 0.0 41 52 79 90 52 90 0.70 Trimerisation motif Trimer_CC PF08954.11 52 AAFL01000021_00013 - 137 0.14 11.7 0.1 2 2 0.19 5.8e+02 0.2 0.0 41 49 90 98 89 100 0.83 Trimerisation motif YafQ_toxin PF15738.5 88 AAFL01000021_00018 - 106 1.6e-26 92.4 3.7 1 1 4.7e-30 2.1e-26 92.0 3.7 1 87 20 106 20 106 0.95 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 AAFL01000021_00018 - 106 1.9e-06 28.4 0.6 1 1 4.9e-10 2.2e-06 28.2 0.6 6 89 23 105 18 106 0.80 ParE toxin of type II toxin-antitoxin system, parDE Ribosomal_S2 PF00318.20 215 AAFL01000021_00018 - 106 0.0042 16.3 0.9 1 1 1.2e-06 0.0053 16.0 0.9 98 164 27 94 21 99 0.83 Ribosomal protein S2 ParE-like_toxin PF15781.5 87 AAFL01000021_00018 - 106 0.017 15.1 1.6 1 1 7.8e-06 0.035 14.1 1.6 5 82 26 105 22 106 0.79 ParE-like toxin of type II bacterial toxin-antitoxin system WGR PF05406.15 80 AAFL01000021_00023 - 75 2.4e-07 30.7 0.6 1 1 3.1e-11 2.7e-07 30.5 0.6 3 73 4 74 2 75 0.87 WGR domain Cadherin_pro PF08758.11 90 AAFL01000021_00023 - 75 0.017 15.3 0.0 1 1 2.3e-06 0.021 15.0 0.0 15 45 26 56 12 62 0.81 Cadherin prodomain like FlaC_arch PF05377.11 55 AAFL01000021_00024 - 76 0.0083 16.5 2.3 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 AAFL01000021_00024 - 76 0.0083 16.5 2.3 2 2 4.6e-07 0.0083 16.5 2.3 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) Phage_integrase PF00589.22 172 AAFL01000021_00025 - 312 5.1e-24 85.0 0.5 1 1 2.8e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 AAFL01000021_00025 - 312 2.3e-05 24.6 3.9 1 3 1.4e-07 0.00043 20.5 1.9 1 79 16 99 16 99 0.88 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 AAFL01000021_00025 - 312 2.3e-05 24.6 3.9 2 3 0.0015 4.4 7.7 0.0 13 35 80 102 76 109 0.89 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 AAFL01000021_00025 - 312 2.3e-05 24.6 3.9 3 3 3.1 9.3e+03 -3.0 0.0 36 54 123 141 114 151 0.54 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 AAFL01000021_00025 - 312 0.00011 22.4 4.6 1 3 3.8e-08 0.00011 22.4 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 AAFL01000021_00025 - 312 0.00011 22.4 4.6 2 3 0.91 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 AAFL01000021_00025 - 312 0.00011 22.4 4.6 3 3 1.8 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phyto-Amp PF15438.6 195 AAFL01000021_00025 - 312 0.0094 15.8 0.3 1 1 5.8e-06 0.017 14.9 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma YbjN PF10722.9 127 AAFL01000021_00025 - 312 0.011 15.8 0.3 1 2 0.00017 0.51 10.4 0.1 38 77 96 135 93 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 AAFL01000021_00025 - 312 0.011 15.8 0.3 2 2 0.04 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator Phage_int_SAM_3 PF14659.6 58 AAFL01000021_00025 - 312 0.028 14.7 3.2 1 1 3.6e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain SprT-like PF10263.9 113 AAFL01000021_00028 - 424 0.056 13.3 0.1 1 1 1.5e-05 0.13 12.1 0.1 58 93 316 353 294 360 0.81 SprT-like family Peptidase_M78 PF06114.13 123 AAFL01000021_00028 - 424 0.077 12.9 0.1 1 1 2e-05 0.18 11.8 0.1 6 63 288 347 285 365 0.76 IrrE N-terminal-like domain DUF4299 PF14132.6 301 AAFL01000023_00002 - 116 1.4e-08 34.5 0.1 1 1 1.8e-12 1.6e-08 34.3 0.1 189 300 12 110 5 111 0.87 Domain of unknown function (DUF4299) XPG_I PF00867.18 94 AAFL01000023_00002 - 116 0.12 12.7 0.0 1 1 1.7e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region AHH PF14412.6 114 AAFL01000023_00004 - 258 5.8e-17 61.8 2.0 1 1 1.3e-20 1.1e-16 60.9 2.0 8 111 153 239 148 243 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH RRF PF01765.19 162 AAFL01000023_00004 - 258 0.25 11.3 7.2 1 2 1.5e-05 0.13 12.2 1.5 122 156 161 196 125 199 0.78 Ribosome recycling factor RRF PF01765.19 162 AAFL01000023_00004 - 258 0.25 11.3 7.2 2 2 0.018 1.6e+02 2.2 0.4 83 106 220 243 207 256 0.59 Ribosome recycling factor Imm59 PF15597.6 100 AAFL01000023_00005 - 185 0.23 12.0 8.7 1 2 2.8e-05 0.51 10.9 1.8 28 85 25 84 20 93 0.82 Immunity protein 59 Imm59 PF15597.6 100 AAFL01000023_00005 - 185 0.23 12.0 8.7 2 2 0.0019 34 5.0 1.5 6 86 87 176 83 184 0.65 Immunity protein 59 CobN-Mg_chel PF02514.16 1089 AAFL01000023_00006 - 128 0.16 9.7 0.0 1 1 1e-05 0.19 9.5 0.0 299 369 36 100 24 109 0.71 CobN/Magnesium Chelatase Ntox24 PF15529.6 97 AAFL01000023_00007 - 90 0.00052 20.3 0.6 1 1 4.7e-08 0.00084 19.6 0.6 17 94 8 74 2 77 0.78 Bacterial toxin 24 AHH PF14412.6 114 AAFL01000023_00011 - 258 1e-15 57.8 1.5 1 1 1.1e-19 2e-15 56.9 1.5 8 111 153 239 148 243 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH Imm70 PF15601.6 131 AAFL01000023_00013 - 137 2.7e-51 172.5 0.6 1 1 3.3e-55 3e-51 172.4 0.6 2 131 5 134 4 134 0.98 Immunity protein 70 Herpes_V23 PF01802.17 290 AAFL01000023_00013 - 137 0.016 14.7 0.0 1 1 2.3e-06 0.021 14.3 0.0 63 122 37 103 32 108 0.85 Herpesvirus VP23 like capsid protein AbfS_sensor PF18225.1 65 AAFL01000023_00014 - 322 0.067 13.1 0.1 1 1 1.1e-05 0.19 11.6 0.1 6 34 268 295 264 305 0.88 Sensor histidine kinase (AbfS) sensor domain DUF1574 PF07611.11 342 AAFL01000023_00015 - 184 0.023 14.1 2.5 1 1 4.4e-06 0.027 13.8 2.5 199 323 39 162 4 165 0.83 Protein of unknown function (DUF1574) LPD7 PF18821.1 94 AAFL01000023_00015 - 184 0.037 14.1 0.4 1 2 0.0072 43 4.3 0.1 30 80 55 110 19 121 0.61 Large polyvalent protein-associated domain 7 LPD7 PF18821.1 94 AAFL01000023_00015 - 184 0.037 14.1 0.4 2 2 0.00055 3.3 7.9 0.1 35 65 124 157 117 161 0.76 Large polyvalent protein-associated domain 7 Imm59 PF15597.6 100 AAFL01000023_00015 - 184 1.8 9.1 9.9 1 3 0.00027 1.6 9.2 2.8 28 74 25 73 20 95 0.84 Immunity protein 59 Imm59 PF15597.6 100 AAFL01000023_00015 - 184 1.8 9.1 9.9 2 3 0.072 4.3e+02 1.5 1.4 15 47 73 108 69 142 0.56 Immunity protein 59 Imm59 PF15597.6 100 AAFL01000023_00015 - 184 1.8 9.1 9.9 3 3 0.043 2.6e+02 2.2 1.1 39 62 124 149 88 183 0.63 Immunity protein 59 TNT PF14021.6 88 AAFL01000023_00016 - 364 1.5e-15 57.5 0.0 1 2 6.2e-13 1.1e-08 35.5 0.0 1 53 238 298 238 304 0.87 Tuberculosis necrotizing toxin TNT PF14021.6 88 AAFL01000023_00016 - 364 1.5e-15 57.5 0.0 2 2 5.1e-08 0.00092 19.7 0.0 53 88 329 363 313 363 0.91 Tuberculosis necrotizing toxin Ank_3 PF13606.6 31 AAFL01000023_00019 - 312 2.9e-10 39.5 0.1 1 4 0.029 1e+02 4.0 0.0 8 26 73 93 71 97 0.81 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000023_00019 - 312 2.9e-10 39.5 0.1 2 4 0.045 1.6e+02 3.4 0.0 12 29 144 160 137 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000023_00019 - 312 2.9e-10 39.5 0.1 3 4 2.5e-07 0.00091 19.5 0.0 2 30 168 195 167 196 0.95 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000023_00019 - 312 2.9e-10 39.5 0.1 4 4 0.0037 13 6.7 0.0 3 30 207 234 205 235 0.89 Ankyrin repeat Ank_2 PF12796.7 83 AAFL01000023_00019 - 312 1.5e-09 38.3 0.0 1 2 0.41 1.5e+03 -0.1 0.0 4 18 74 92 70 121 0.55 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 AAFL01000023_00019 - 312 1.5e-09 38.3 0.0 2 2 3.2e-12 1.1e-08 35.5 0.0 7 80 144 234 138 237 0.79 Ankyrin repeats (3 copies) Ank_4 PF13637.6 55 AAFL01000023_00019 - 312 1.3e-05 25.6 0.1 1 3 0.99 3.6e+03 -1.3 0.0 10 21 73 89 66 98 0.52 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000023_00019 - 312 1.3e-05 25.6 0.1 2 3 3.2e-07 0.0011 19.4 0.0 13 55 146 188 134 188 0.83 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000023_00019 - 312 1.3e-05 25.6 0.1 3 3 0.076 2.7e+02 2.3 0.0 4 28 209 234 207 243 0.79 Ankyrin repeats (many copies) Ank PF00023.30 32 AAFL01000023_00019 - 312 3.6e-05 24.0 0.0 1 3 0.034 1.2e+02 3.4 0.0 12 25 144 158 131 165 0.81 Ankyrin repeat Ank PF00023.30 32 AAFL01000023_00019 - 312 3.6e-05 24.0 0.0 2 3 0.00068 2.5 8.7 0.0 2 31 168 198 167 199 0.87 Ankyrin repeat Ank PF00023.30 32 AAFL01000023_00019 - 312 3.6e-05 24.0 0.0 3 3 0.0018 6.5 7.4 0.0 5 28 209 234 206 237 0.76 Ankyrin repeat Ank_5 PF13857.6 56 AAFL01000023_00019 - 312 0.0063 16.8 0.3 1 5 2.5 8.8e+03 -2.8 0.0 42 52 50 60 48 61 0.76 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000023_00019 - 312 0.0063 16.8 0.3 2 5 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.81 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000023_00019 - 312 0.0063 16.8 0.3 3 5 0.064 2.3e+02 2.3 0.0 26 53 144 172 142 173 0.83 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000023_00019 - 312 0.0063 16.8 0.3 4 5 3.5e-05 0.13 12.7 0.0 9 48 162 200 153 202 0.83 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000023_00019 - 312 0.0063 16.8 0.3 5 5 4.1 1.5e+04 -3.5 0.0 37 53 228 242 224 243 0.46 Ankyrin repeats (many copies) Rapsyn_N PF10579.9 80 AAFL01000025_00002 - 358 0.12 12.5 1.2 1 2 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 AAFL01000025_00002 - 358 0.12 12.5 1.2 2 2 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region DZR PF12773.7 49 AAFL01000025_00003 - 114 0.039 14.0 0.3 1 1 9.1e-06 0.054 13.5 0.3 13 37 5 38 2 43 0.91 Double zinc ribbon DiS_P_DiS PF06750.13 84 AAFL01000025_00003 - 114 0.04 14.1 0.4 1 1 1.3e-05 0.077 13.1 0.4 29 72 6 49 2 59 0.83 Bacterial Peptidase A24 N-terminal domain zinc_ribbon_4 PF13717.6 36 AAFL01000025_00003 - 114 0.6 10.1 4.6 1 2 0.054 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 AAFL01000025_00003 - 114 0.6 10.1 4.6 2 2 0.00011 0.64 10.0 0.4 3 14 30 41 29 45 0.88 zinc-ribbon domain Myc-LZ PF02344.15 31 AAFL01000025_00004 - 34 0.045 13.9 0.4 1 1 3e-06 0.054 13.6 0.4 8 18 15 25 14 27 0.94 Myc leucine zipper domain DivIC PF04977.15 80 AAFL01000025_00005 - 635 0.0014 18.3 0.2 1 5 8e-08 0.0014 18.3 0.2 23 78 35 90 31 92 0.94 Septum formation initiator DivIC PF04977.15 80 AAFL01000025_00005 - 635 0.0014 18.3 0.2 2 5 0.19 3.3e+03 -2.1 3.7 24 50 259 285 248 295 0.58 Septum formation initiator DivIC PF04977.15 80 AAFL01000025_00005 - 635 0.0014 18.3 0.2 3 5 0.48 8.6e+03 -3.4 0.3 40 57 376 392 375 393 0.79 Septum formation initiator DivIC PF04977.15 80 AAFL01000025_00005 - 635 0.0014 18.3 0.2 4 5 0.4 7.1e+03 -3.1 2.3 21 41 439 459 431 484 0.61 Septum formation initiator DivIC PF04977.15 80 AAFL01000025_00005 - 635 0.0014 18.3 0.2 5 5 0.17 3.1e+03 -2.0 0.1 16 35 614 633 609 635 0.77 Septum formation initiator Prok-TraM PF09228.10 102 AAFL01000025_00007 - 254 0.072 13.5 0.0 1 1 2.9e-05 0.17 12.2 0.0 30 94 8 72 2 76 0.92 Prokaryotic Transcriptional repressor TraM DUF2345 PF10106.9 151 AAFL01000025_00007 - 254 0.18 11.7 1.5 1 2 0.17 1e+03 -0.5 0.1 112 141 101 130 84 140 0.67 Uncharacterized protein conserved in bacteria (DUF2345) DUF2345 PF10106.9 151 AAFL01000025_00007 - 254 0.18 11.7 1.5 2 2 0.00023 1.4 8.8 0.1 86 143 154 209 147 214 0.80 Uncharacterized protein conserved in bacteria (DUF2345) Flu_B_M2 PF04772.12 109 AAFL01000025_00007 - 254 2.2 8.6 11.0 1 3 3e-05 0.18 12.1 0.4 43 101 36 94 29 97 0.90 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 AAFL01000025_00007 - 254 2.2 8.6 11.0 2 3 0.035 2.1e+02 2.2 4.4 25 87 89 151 87 206 0.90 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 AAFL01000025_00007 - 254 2.2 8.6 11.0 3 3 0.29 1.7e+03 -0.7 0.0 73 104 191 222 175 225 0.71 Influenza B matrix protein 2 (BM2) Y1_Tnp PF01797.16 121 AAFL01000026_00001 - 158 8.8e-37 125.9 2.5 1 1 6.8e-41 1.2e-36 125.4 2.5 2 121 13 133 12 133 0.95 Transposase IS200 like PcfJ PF14284.6 144 AAFL01000026_00002 - 112 7.7e-06 25.9 1.5 1 1 1.4e-09 8.6e-06 25.7 1.5 43 135 4 96 1 105 0.80 PcfJ-like protein NmrA PF05368.13 233 AAFL01000026_00002 - 112 0.0093 15.5 0.3 1 1 1.9e-06 0.012 15.2 0.3 121 224 12 108 7 111 0.77 NmrA-like family DUF4060 PF13269.6 73 AAFL01000026_00002 - 112 0.085 12.9 0.1 1 2 0.0092 55 3.9 0.0 19 38 32 51 14 57 0.88 Protein of unknown function (DUF4060) DUF4060 PF13269.6 73 AAFL01000026_00002 - 112 0.085 12.9 0.1 2 2 0.0009 5.4 7.2 0.0 34 56 61 83 55 89 0.88 Protein of unknown function (DUF4060) GTP_EFTU PF00009.27 194 AAFL01000026_00004 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 AAFL01000026_00004 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 AAFL01000026_00004 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 AAFL01000026_00004 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 AAFL01000026_00004 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 AAFL01000026_00004 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 AAFL01000026_00004 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 AAFL01000026_00004 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 AAFL01000026_00004 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 AAFL01000026_00004 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family DUF5442 PF17514.2 107 AAFL01000026_00005 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 AAFL01000026_00005 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) AAA_31 PF13614.6 177 AAFL01000027_00001 - 185 0.00011 22.2 0.6 1 2 2.3e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 AAFL01000027_00001 - 185 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 AAFL01000027_00001 - 185 0.0021 18.1 0.8 1 1 3.1e-06 0.019 15.0 0.8 1 55 3 89 3 163 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 AAFL01000027_00001 - 185 0.014 14.8 0.0 1 1 3.2e-06 0.019 14.4 0.0 17 109 69 171 61 177 0.77 short chain dehydrogenase Put_DNA-bind_N PF06971.13 49 AAFL01000027_00003 - 141 0.034 14.2 0.0 1 1 3.2e-06 0.058 13.4 0.0 11 34 4 27 3 30 0.94 Putative DNA-binding protein N-terminus RseC_MucC PF04246.12 130 AAFL01000027_00005 - 93 9.1 6.3 6.3 1 2 0.085 1.5e+03 -1.0 0.1 78 96 5 22 3 31 0.58 Positive regulator of sigma(E), RseC/MucC RseC_MucC PF04246.12 130 AAFL01000027_00005 - 93 9.1 6.3 6.3 2 2 0.00014 2.4 8.1 3.1 62 112 32 81 27 91 0.74 Positive regulator of sigma(E), RseC/MucC DUF2974 PF11187.8 224 AAFL01000027_00007 - 202 0.00072 19.2 0.1 1 1 1.9e-07 0.0011 18.5 0.1 7 94 100 196 95 198 0.73 Protein of unknown function (DUF2974) DUF676 PF05057.14 219 AAFL01000027_00007 - 202 0.044 13.3 0.0 1 1 1.4e-05 0.086 12.3 0.0 63 91 170 198 130 200 0.73 Putative serine esterase (DUF676) Lipase_3 PF01764.25 142 AAFL01000027_00007 - 202 0.1 12.4 0.2 1 1 4.6e-05 0.28 11.1 0.1 50 75 172 196 121 197 0.77 Lipase (class 3) DUF2239 PF09998.9 184 AAFL01000028_00001 - 117 0.081 12.7 0.7 1 1 1.7e-05 0.1 12.4 0.7 22 71 45 92 37 104 0.74 Uncharacterized protein conserved in bacteria (DUF2239) sCache_like PF16736.5 117 AAFL01000028_00001 - 117 0.11 12.6 5.3 1 1 2.8e-05 0.16 12.0 5.3 30 91 40 100 37 108 0.73 Single Cache-like PepSY_2 PF13670.6 84 AAFL01000028_00001 - 117 0.17 11.9 0.9 1 1 4.6e-05 0.28 11.2 0.9 41 80 41 78 38 82 0.84 Peptidase propeptide and YPEB domain Ank_3 PF13606.6 31 AAFL01000028_00002 - 314 1.1e-09 37.7 0.3 1 4 0.018 63 4.6 0.0 8 26 73 93 71 97 0.83 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000028_00002 - 314 1.1e-09 37.7 0.3 2 4 0.043 1.6e+02 3.4 0.0 12 29 145 161 133 163 0.80 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000028_00002 - 314 1.1e-09 37.7 0.3 3 4 3.6e-06 0.013 16.0 0.0 2 30 169 196 168 197 0.94 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000028_00002 - 314 1.1e-09 37.7 0.3 4 4 0.0014 5.1 8.0 0.0 1 30 207 236 207 237 0.92 Ankyrin repeat Ank_2 PF12796.7 83 AAFL01000028_00002 - 314 4e-08 33.7 0.1 1 2 0.54 1.9e+03 -0.5 0.0 4 18 74 92 70 121 0.56 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 AAFL01000028_00002 - 314 4e-08 33.7 0.1 2 2 7.1e-11 2.6e-07 31.2 0.0 7 80 145 236 139 239 0.77 Ankyrin repeats (3 copies) Ank PF00023.30 32 AAFL01000028_00002 - 314 0.00041 20.7 0.0 1 3 0.024 85 3.9 0.0 12 26 145 160 129 166 0.79 Ankyrin repeat Ank PF00023.30 32 AAFL01000028_00002 - 314 0.00041 20.7 0.0 2 3 0.0043 15 6.2 0.0 3 31 170 199 169 200 0.85 Ankyrin repeat Ank PF00023.30 32 AAFL01000028_00002 - 314 0.00041 20.7 0.0 3 3 0.0046 16 6.1 0.0 15 28 222 236 207 239 0.67 Ankyrin repeat Ank_5 PF13857.6 56 AAFL01000028_00002 - 314 0.0021 18.3 0.1 1 3 2.5 8.9e+03 -2.8 0.0 42 52 50 60 48 61 0.76 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000028_00002 - 314 0.0021 18.3 0.1 2 3 0.62 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000028_00002 - 314 0.0021 18.3 0.1 3 3 8.1e-06 0.029 14.7 0.0 1 47 154 200 143 203 0.93 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000028_00002 - 314 0.0029 18.2 0.1 1 3 1.4 5e+03 -1.7 0.0 10 21 76 89 67 98 0.54 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000028_00002 - 314 0.0029 18.2 0.1 2 3 5.2e-05 0.18 12.4 0.1 14 55 148 189 135 189 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000028_00002 - 314 0.0029 18.2 0.1 3 3 0.094 3.4e+02 2.0 0.0 3 28 210 236 208 239 0.82 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 AAFL01000028_00003 - 599 6.7e-08 32.7 0.0 1 3 0.47 4.2e+03 -1.9 2.0 15 43 364 392 356 395 0.65 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 AAFL01000028_00003 - 599 6.7e-08 32.7 0.0 2 3 7.4e-12 6.7e-08 32.7 0.0 13 84 417 490 398 492 0.81 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 AAFL01000028_00003 - 599 6.7e-08 32.7 0.0 3 3 2 1.8e+04 -4.0 0.7 46 58 499 512 497 524 0.52 Restriction endonuclease fold toxin 7 DUF2239 PF09998.9 184 AAFL01000028_00003 - 599 2.2 8.1 9.1 1 2 0.00019 1.7 8.4 0.6 23 71 46 92 38 103 0.74 Uncharacterized protein conserved in bacteria (DUF2239) DUF2239 PF09998.9 184 AAFL01000028_00003 - 599 2.2 8.1 9.1 2 2 0.0089 80 2.9 2.4 5 67 260 324 257 390 0.78 Uncharacterized protein conserved in bacteria (DUF2239) Ank_2 PF12796.7 83 AAFL01000028_00004 - 315 4e-12 46.6 0.5 1 2 1.1e-07 0.00029 21.4 0.1 27 82 132 199 71 200 0.70 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 AAFL01000028_00004 - 315 4e-12 46.6 0.5 2 2 1.1e-10 2.9e-07 31.0 0.0 7 80 145 237 136 240 0.79 Ankyrin repeats (3 copies) Ank_3 PF13606.6 31 AAFL01000028_00004 - 315 1.4e-10 40.4 0.3 1 4 0.025 63 4.6 0.0 8 26 73 93 71 97 0.83 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000028_00004 - 315 1.4e-10 40.4 0.3 2 4 0.058 1.5e+02 3.5 0.0 12 29 145 161 135 163 0.78 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000028_00004 - 315 1.4e-10 40.4 0.3 3 4 6.6e-07 0.0017 18.7 0.0 1 30 169 197 169 198 0.95 Ankyrin repeat Ank_3 PF13606.6 31 AAFL01000028_00004 - 315 1.4e-10 40.4 0.3 4 4 0.002 5.2 8.0 0.0 1 30 208 237 208 238 0.92 Ankyrin repeat Ank PF00023.30 32 AAFL01000028_00004 - 315 1.4e-05 25.3 0.0 1 3 0.017 44 4.8 0.0 11 26 144 160 132 166 0.69 Ankyrin repeat Ank PF00023.30 32 AAFL01000028_00004 - 315 1.4e-05 25.3 0.0 2 3 0.0003 0.76 10.3 0.0 1 31 169 200 169 201 0.87 Ankyrin repeat Ank PF00023.30 32 AAFL01000028_00004 - 315 1.4e-05 25.3 0.0 3 3 0.0071 18 6.0 0.0 12 28 223 237 208 240 0.69 Ankyrin repeat Ank_4 PF13637.6 55 AAFL01000028_00004 - 315 8.4e-05 23.0 0.2 1 3 1.7 4.3e+03 -1.5 0.0 10 21 76 89 67 102 0.57 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000028_00004 - 315 8.4e-05 23.0 0.2 2 3 7e-06 0.018 15.6 0.1 14 55 148 190 132 190 0.79 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 AAFL01000028_00004 - 315 8.4e-05 23.0 0.2 3 3 0.039 99 3.7 0.0 3 28 211 237 193 240 0.87 Ankyrin repeats (many copies) FAM25 PF15825.5 65 AAFL01000028_00004 - 315 0.0056 17.0 1.3 1 2 0.00094 2.4 8.6 0.2 13 35 108 128 104 130 0.91 FAM25 family FAM25 PF15825.5 65 AAFL01000028_00004 - 315 0.0056 17.0 1.3 2 2 0.0038 9.7 6.6 0.1 21 35 301 315 291 315 0.85 FAM25 family Ank_5 PF13857.6 56 AAFL01000028_00004 - 315 0.095 13.0 0.1 1 4 3.5 8.9e+03 -2.8 0.0 42 52 50 60 48 61 0.76 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000028_00004 - 315 0.095 13.0 0.1 2 4 0.78 2e+03 -0.7 0.0 26 42 79 96 73 99 0.80 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000028_00004 - 315 0.095 13.0 0.1 3 4 0.17 4.3e+02 1.4 0.0 26 53 145 174 143 176 0.70 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 AAFL01000028_00004 - 315 0.095 13.0 0.1 4 4 0.0011 2.7 8.4 0.0 1 46 154 200 154 203 0.84 Ankyrin repeats (many copies) AHH PF14412.6 114 AAFL01000028_00004 - 315 0.17 11.9 0.6 1 2 0.01 26 4.9 0.1 19 55 71 106 69 128 0.84 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH AHH PF14412.6 114 AAFL01000028_00004 - 315 0.17 11.9 0.6 2 2 0.0089 23 5.1 0.0 71 92 294 314 249 315 0.89 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH Tox-REase-7 PF15649.6 86 AAFL01000028_00005 - 162 1.3e-08 35.0 0.4 1 2 4e-12 2.4e-08 34.2 0.1 14 84 12 84 4 86 0.84 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 AAFL01000028_00005 - 162 1.3e-08 35.0 0.4 2 2 0.86 5.1e+03 -2.2 0.0 44 57 144 158 107 161 0.62 Restriction endonuclease fold toxin 7 Tn7_Tnp_TnsA_N PF08722.11 88 AAFL01000028_00005 - 162 0.0021 18.2 1.0 1 2 4.8e-07 0.0029 17.8 0.1 30 75 26 68 8 74 0.75 TnsA endonuclease N terminal Tn7_Tnp_TnsA_N PF08722.11 88 AAFL01000028_00005 - 162 0.0021 18.2 1.0 2 2 1.6 9.7e+03 -3.1 0.1 57 64 150 157 135 161 0.55 TnsA endonuclease N terminal VRR_NUC PF08774.11 108 AAFL01000028_00005 - 162 0.041 13.9 0.0 1 2 2.1e-05 0.13 12.4 0.0 47 96 21 66 3 75 0.81 VRR-NUC domain VRR_NUC PF08774.11 108 AAFL01000028_00005 - 162 0.041 13.9 0.0 2 2 0.27 1.6e+03 -0.8 0.0 35 56 85 106 61 121 0.69 VRR-NUC domain adh_short PF00106.25 195 AAFL01000029_00001 - 117 0.0094 15.4 0.0 1 1 1.1e-06 0.01 15.3 0.0 20 109 3 102 1 112 0.79 short chain dehydrogenase Mur_ligase_C PF02875.21 91 AAFL01000029_00001 - 117 0.086 13.1 0.0 1 1 1.3e-05 0.12 12.7 0.0 20 78 14 69 1 79 0.80 Mur ligase family, glutamate ligase domain RHH_7 PF16777.5 74 AAFL01000029_00002 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 AAFL01000029_00002 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal PTS-HPr PF00381.19 82 AAFL01000029_00003 - 44 0.17 12.1 0.0 1 1 1.1e-05 0.19 12.0 0.0 34 61 13 39 2 43 0.75 PTS HPr component phosphorylation site NYN PF01936.18 147 AAFL01000029_00005 - 180 1.2e-09 38.8 0.0 1 1 2.3e-13 1.4e-09 38.6 0.0 57 123 71 146 15 161 0.81 NYN domain Peroxin-22 PF12827.7 113 AAFL01000029_00005 - 180 0.014 15.3 0.5 1 1 4.7e-06 0.028 14.3 0.5 26 105 82 162 46 169 0.78 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 AAFL01000029_00005 - 180 0.028 15.1 0.0 1 1 7.5e-06 0.045 14.4 0.0 57 103 99 142 72 142 0.87 PIN domain DUF2400 PF09674.10 227 AAFL01000029_00006 - 217 0.26 11.2 4.0 1 2 0.0095 1.7e+02 2.0 0.1 38 75 49 86 42 96 0.78 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 AAFL01000029_00006 - 217 0.26 11.2 4.0 2 2 3.1e-05 0.56 10.2 0.8 25 110 96 181 92 209 0.74 Protein of unknown function (DUF2400) HTH_46 PF15977.5 68 AAFL01000030_00002 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 AAFL01000030_00002 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 AAFL01000030_00002 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 AAFL01000030_00002 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 AAFL01000030_00002 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 AAFL01000030_00002 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 AAFL01000030_00002 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 AAFL01000030_00002 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 AAFL01000030_00002 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 AAFL01000030_00002 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 AAFL01000030_00002 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 AAFL01000030_00003 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 AAFL01000030_00003 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 AAFL01000030_00003 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 AAFL01000030_00003 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 AAFL01000030_00003 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide AAA_25 PF13481.6 194 AAFL01000031_00001 - 573 4.4e-15 55.8 0.0 1 1 5.2e-18 1e-14 54.5 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 AAFL01000031_00001 - 573 0.00028 20.3 0.0 1 2 9.2e-07 0.0018 17.6 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 AAFL01000031_00001 - 573 0.00028 20.3 0.0 2 2 0.015 31 3.8 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 AAFL01000031_00001 - 573 0.0021 17.8 0.0 1 2 6.9e-06 0.014 15.2 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 AAFL01000031_00001 - 573 0.0021 17.8 0.0 2 2 0.64 1.3e+03 -1.0 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 AAFL01000031_00001 - 573 0.007 15.7 0.0 1 2 3.5e-05 0.07 12.5 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 AAFL01000031_00001 - 573 0.007 15.7 0.0 2 2 0.77 1.5e+03 -1.7 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 AAFL01000031_00001 - 573 0.02 15.3 0.3 1 3 0.00016 0.31 11.5 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 AAFL01000031_00001 - 573 0.02 15.3 0.3 2 3 0.37 7.3e+02 0.6 0.0 47 74 411 434 377 445 0.70 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 AAFL01000031_00001 - 573 0.02 15.3 0.3 3 3 4.3 8.5e+03 -2.9 0.0 23 49 495 523 475 527 0.69 ATPase family associated with various cellular activities (AAA) ApoC-I PF04691.12 61 AAFL01000031_00001 - 573 0.13 12.2 3.2 1 3 0.0024 4.8 7.2 0.0 10 35 57 82 53 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 AAFL01000031_00001 - 573 0.13 12.2 3.2 2 3 0.21 4.2e+02 1.0 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 AAFL01000031_00001 - 573 0.13 12.2 3.2 3 3 0.19 3.9e+02 1.1 0.1 7 23 519 535 516 541 0.76 Apolipoprotein C-I (ApoC-1) CbiA PF01656.23 128 AAFL01000031_00001 - 573 0.21 11.6 2.1 1 1 0.00045 0.89 9.6 2.1 1 29 35 63 35 548 0.91 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 AAFL01000031_00001 - 573 0.65 9.6 5.5 1 2 0.0064 13 5.5 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 AAFL01000031_00001 - 573 0.65 9.6 5.5 2 2 0.0083 17 5.1 1.5 16 28 517 529 511 531 0.91 VASP tetramerisation domain DUF1947 PF09183.10 66 AAFL01000031_00001 - 573 0.65 10.3 6.4 1 2 0.15 2.9e+02 1.9 0.2 23 46 245 269 237 271 0.78 Domain of unknown function (DUF1947) DUF1947 PF09183.10 66 AAFL01000031_00001 - 573 0.65 10.3 6.4 2 2 0.00081 1.6 9.1 1.7 7 42 517 550 515 567 0.87 Domain of unknown function (DUF1947) HicA_toxin PF07927.12 58 AAFL01000031_00002 - 67 6.1e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, Endomucin PF07010.12 260 AAFL01000032_00002 - 87 0.029 14.4 0.5 1 1 1.7e-06 0.03 14.3 0.5 176 206 51 81 23 86 0.86 Endomucin HicA_toxin PF07927.12 58 AAFL01000032_00003 - 67 6.2e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, N-glycanase_N PF09112.10 173 AAFL01000033_00001 - 175 0.016 15.0 0.1 1 1 2.4e-06 0.021 14.6 0.1 62 156 15 113 14 138 0.74 Peptide-N-glycosidase F, N terminal Phage_terminase PF10668.9 60 AAFL01000033_00001 - 175 0.17 11.9 0.6 1 1 4.1e-05 0.37 10.9 0.6 11 31 80 101 79 104 0.84 Phage terminase small subunit RHH_7 PF16777.5 74 AAFL01000033_00002 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 AAFL01000033_00002 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal adh_short PF00106.25 195 AAFL01000033_00003 - 117 0.0094 15.4 0.0 1 1 1.1e-06 0.01 15.3 0.0 20 109 3 102 1 112 0.79 short chain dehydrogenase Mur_ligase_C PF02875.21 91 AAFL01000033_00003 - 117 0.086 13.1 0.0 1 1 1.3e-05 0.12 12.7 0.0 20 78 14 69 1 79 0.80 Mur ligase family, glutamate ligase domain HicB_lk_antitox PF15919.5 123 AAFL01000034_00001 - 89 4.4e-08 33.3 0.0 1 1 3.5e-12 6.3e-08 32.8 0.0 3 58 5 59 3 67 0.87 HicB_like antitoxin of bacterial toxin-antitoxin system Toprim_3 PF13362.6 95 AAFL01000035_00001 - 283 1.3e-06 28.7 0.1 1 2 0.37 3.3e+03 -1.5 0.0 55 74 78 101 70 109 0.74 Toprim domain Toprim_3 PF13362.6 95 AAFL01000035_00001 - 283 1.3e-06 28.7 0.1 2 2 4.9e-10 4.4e-06 27.0 0.0 3 74 189 268 187 277 0.89 Toprim domain Retrotrans_gag PF03732.17 96 AAFL01000035_00001 - 283 0.0086 16.3 0.1 1 2 0.0068 61 4.0 0.2 41 60 67 87 37 100 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 AAFL01000035_00001 - 283 0.0086 16.3 0.1 2 2 9.9e-05 0.88 9.9 0.0 14 83 200 277 195 282 0.80 Retrotransposon gag protein Acetyltransf_7 PF13508.7 76 AANQ01000006_00002 - 234 0.0008 19.8 0.1 1 1 3.3e-07 0.002 18.5 0.1 29 75 79 143 7 144 0.70 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 AANQ01000006_00002 - 234 0.021 15.1 0.1 1 1 8.6e-06 0.051 13.8 0.1 59 92 66 109 30 142 0.69 Acetyltransferase (GNAT) family GramPos_pilinBB PF16569.5 115 AANQ01000006_00002 - 234 0.2 12.5 4.3 1 2 2.9e-05 0.17 12.7 1.7 56 111 16 72 2 76 0.74 Gram-positive pilin backbone subunit 2, Cna-B-like domain GramPos_pilinBB PF16569.5 115 AANQ01000006_00002 - 234 0.2 12.5 4.3 2 2 0.26 1.6e+03 -0.1 0.0 20 62 128 174 112 199 0.60 Gram-positive pilin backbone subunit 2, Cna-B-like domain Relaxase PF03432.14 242 AANQ01000006_00003 - 462 3.6e-10 39.9 7.4 1 2 2e-14 3.6e-10 39.9 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 AANQ01000006_00003 - 462 3.6e-10 39.9 7.4 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 AANQ01000006_00004 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 AANQ01000006_00004 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 AANQ01000006_00004 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 AANQ01000006_00004 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 AANQ01000006_00004 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 AANQ01000006_00004 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 AANQ01000006_00004 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 AANQ01000006_00004 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 AANQ01000006_00004 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 AANQ01000006_00004 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 AANQ01000006_00004 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 AANQ01000006_00005 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 AANQ01000006_00005 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 AANQ01000006_00005 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 AANQ01000006_00005 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 AANQ01000006_00005 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 AANQ01000006_00007 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 AANQ01000006_00007 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 AANQ01000006_00007 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 AANQ01000006_00007 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 AANQ01000006_00007 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 AANQ01000006_00008 - 97 0.0069 16.3 0.0 1 1 8.3e-07 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) Sdh_cyt PF01127.22 121 AANQ01000006_00009 - 91 0.0079 16.2 2.8 1 1 1.2e-06 0.01 15.8 2.8 34 88 20 76 18 78 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2633 PF11119.8 57 AANQ01000006_00009 - 91 1.1 9.3 4.2 1 1 0.00022 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 AANQ01000006_00011 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 AANQ01000006_00012 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 AANQ01000006_00013 - 597 1.6e-14 54.0 0.0 1 1 1.3e-17 3.3e-14 52.9 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 AANQ01000006_00013 - 597 0.00038 19.9 0.0 1 2 7.4e-07 0.0019 17.6 0.0 16 117 30 136 24 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 AANQ01000006_00013 - 597 0.00038 19.9 0.0 2 2 0.017 44 3.3 0.0 122 183 113 176 96 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 AANQ01000006_00013 - 597 0.0022 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 AANQ01000006_00013 - 597 0.0022 17.7 0.0 2 2 0.5 1.3e+03 -1.0 0.0 99 118 111 130 102 168 0.67 IstB-like ATP binding protein ATPase PF06745.13 231 AANQ01000006_00013 - 597 0.009 15.4 0.0 1 2 2.3e-05 0.058 12.7 0.0 16 70 30 83 23 120 0.90 KaiC ATPase PF06745.13 231 AANQ01000006_00013 - 597 0.009 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 AANQ01000006_00013 - 597 0.0093 16.4 0.2 1 2 8.6e-05 0.22 11.9 0.0 2 105 37 166 36 176 0.67 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 AANQ01000006_00013 - 597 0.0093 16.4 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 AANQ01000006_00013 - 597 0.18 11.9 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.91 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 AANQ01000006_00013 - 597 0.37 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 AANQ01000006_00013 - 597 0.37 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 AANQ01000006_00013 - 597 0.37 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 AANQ01000006_00014 - 204 2.5e-34 118.5 0.6 1 1 7.4e-38 3.3e-34 118.1 0.6 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 AANQ01000006_00014 - 204 0.025 14.3 0.6 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 AANQ01000006_00014 - 204 0.025 14.3 0.6 2 3 0.0021 9.6 6.1 0.0 2 36 117 152 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 AANQ01000006_00014 - 204 0.025 14.3 0.6 3 3 0.0036 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 AANQ01000006_00014 - 204 0.05 13.6 4.8 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 AANQ01000006_00014 - 204 0.05 13.6 4.8 2 3 1.5 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 AANQ01000006_00014 - 204 0.05 13.6 4.8 3 3 0.024 1.1e+02 3.0 0.1 39 55 159 175 153 177 0.91 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 AANQ01000006_00014 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 AANQ01000006_00014 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 AANQ01000006_00014 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 AANQ01000006_00015 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 AANQ01000006_00015 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 TrbC PF04956.13 99 AANQ01000006_00017 - 97 2.7e-15 56.4 6.5 1 1 3.1e-19 2.8e-15 56.3 6.5 16 99 12 95 1 95 0.91 TrbC/VIRB2 family DUF2062 PF09835.9 148 AANQ01000006_00017 - 97 0.071 13.0 4.3 1 1 1.1e-05 0.096 12.5 4.2 76 135 45 97 19 97 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 AANQ01000006_00018 - 922 2.4e-51 174.8 0.3 1 1 9.2e-55 5.5e-51 173.6 0.3 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 AANQ01000006_00018 - 922 3.6e-21 75.2 0.8 1 1 1e-24 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 AANQ01000006_00018 - 922 0.046 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 AANQ01000006_00019 - 188 1.8e-31 108.5 0.0 1 1 3.2e-35 2.9e-31 107.9 0.0 2 88 24 122 23 122 0.89 Phage regulatory protein Rha (Phage_pRha) Y_Y_Y PF07495.13 66 AANQ01000006_00019 - 188 0.1 12.6 0.3 1 1 2e-05 0.18 11.8 0.3 19 63 126 174 122 177 0.80 Y_Y_Y domain PBECR2 PF18810.1 119 AANQ01000006_00020 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 SSB PF00436.25 104 AANQ01000006_00021 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 AANQ01000006_00022 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 AANQ01000006_00022 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 AANQ01000006_00022 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 AANQ01000006_00022 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 AANQ01000006_00022 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 AANQ01000006_00022 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 AANQ01000006_00022 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 AANQ01000006_00023 - 329 1e-28 101.1 13.2 1 1 4.8e-32 1.4e-28 100.6 13.2 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 AANQ01000006_00023 - 329 0.0036 17.4 0.6 1 2 0.39 1.2e+03 -0.2 0.0 30 54 134 158 116 170 0.79 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 AANQ01000006_00023 - 329 0.0036 17.4 0.6 2 2 7.1e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 AANQ01000006_00023 - 329 0.015 15.9 0.9 1 2 1.5 4.6e+03 -1.7 0.0 54 69 123 138 98 163 0.56 von Willebrand factor type A domain VWA_2 PF13519.6 107 AANQ01000006_00023 - 329 0.015 15.9 0.9 2 2 1.2e-05 0.036 14.7 0.2 31 84 208 270 197 307 0.84 von Willebrand factor type A domain KMP11 PF03037.16 90 AANQ01000006_00023 - 329 0.026 15.3 1.5 1 2 5.7e-05 0.17 12.7 0.0 8 56 91 139 88 174 0.82 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 AANQ01000006_00023 - 329 0.026 15.3 1.5 2 2 0.7 2.1e+03 -0.4 0.5 58 58 304 304 228 329 0.63 Kinetoplastid membrane protein 11 Tissue_fac PF01108.17 107 AANQ01000006_00023 - 329 0.03 14.2 0.1 1 1 2.1e-05 0.062 13.2 0.1 4 64 80 148 76 182 0.68 Tissue factor AATF-Che1 PF13339.6 139 AANQ01000006_00023 - 329 0.34 11.6 11.8 1 2 0.021 64 4.2 0.7 48 135 107 145 42 182 0.59 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 AANQ01000006_00023 - 329 0.34 11.6 11.8 2 2 0.00014 0.41 11.3 4.5 49 116 225 306 205 328 0.68 Apoptosis antagonizing transcription factor TrbL PF04610.14 215 AANQ01000006_00024 - 331 2.1e-30 106.1 33.3 1 2 3.5e-34 2.1e-30 106.1 33.3 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 AANQ01000006_00024 - 331 2.1e-30 106.1 33.3 2 2 0.62 3.7e+03 -2.6 0.1 79 85 287 293 256 327 0.51 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 AANQ01000006_00024 - 331 0.061 13.1 0.9 1 2 0.4 2.4e+03 -1.6 0.1 39 51 70 82 61 114 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 AANQ01000006_00024 - 331 0.061 13.1 0.9 2 2 3.6e-05 0.21 11.4 0.0 37 81 243 287 222 299 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 AANQ01000006_00024 - 331 0.17 11.9 0.0 1 1 5.1e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) Trep_dent_lipo PF09710.10 397 AANQ01000006_00025 - 54 0.034 13.1 1.0 1 1 5.2e-06 0.031 13.2 1.0 3 25 3 24 1 53 0.80 Treponema clustered lipoprotein (Trep_dent_lipo) La_HTH_kDCL PF18177.1 90 AANQ01000006_00025 - 54 0.19 12.0 0.0 1 1 3.6e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain PsbT PF01405.17 29 AANQ01000006_00025 - 54 1.1 9.1 5.2 1 1 0.00027 1.6 8.6 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 AANQ01000006_00026 - 219 1.6e-52 178.5 0.5 1 1 1.9e-56 1.7e-52 178.4 0.5 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 AANQ01000006_00026 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 AANQ01000006_00027 - 296 4.2e-56 190.0 1.7 1 1 1.1e-59 6.7e-56 189.3 1.7 2 211 31 271 30 271 0.92 Conjugal transfer protein TraE PF05309.11 182 AANQ01000006_00027 - 296 0.022 14.2 0.1 1 1 6.6e-06 0.039 13.3 0.1 107 171 89 154 86 161 0.83 TraE protein Rho_RNA_bind PF07497.12 73 AANQ01000006_00027 - 296 0.068 13.0 0.0 1 2 1.5 9.2e+03 -3.4 0.0 9 22 79 92 76 97 0.79 Rho termination factor, RNA-binding domain Rho_RNA_bind PF07497.12 73 AANQ01000006_00027 - 296 0.068 13.0 0.0 2 2 3.3e-05 0.2 11.6 0.0 21 49 241 269 232 288 0.84 Rho termination factor, RNA-binding domain TrbI PF03743.14 187 AANQ01000006_00028 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.4e+03 -3.4 0.3 136 154 140 166 120 172 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 AANQ01000006_00028 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 AANQ01000006_00028 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease T2SSE PF00437.20 273 AANQ01000006_00029 - 335 1.5e-54 184.9 0.0 1 1 3.1e-57 1.7e-54 184.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 AANQ01000006_00029 - 335 7e-05 23.4 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 AANQ01000006_00029 - 335 0.00011 21.6 0.0 1 1 3.1e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 AANQ01000006_00029 - 335 0.00029 20.4 0.0 1 1 9.1e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 AANQ01000006_00029 - 335 0.0014 18.9 0.0 1 1 4.6e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 AANQ01000006_00029 - 335 0.0014 18.4 0.0 1 1 4e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 AANQ01000006_00029 - 335 0.0025 17.6 0.0 1 1 9.5e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 AANQ01000006_00029 - 335 0.0035 17.3 0.0 1 1 1.3e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 AANQ01000006_00029 - 335 0.0055 15.7 0.0 1 1 1.4e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 AANQ01000006_00029 - 335 0.0073 16.2 0.0 1 1 2.2e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 AANQ01000006_00029 - 335 0.0087 15.4 0.0 1 1 2.5e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 AANQ01000006_00029 - 335 0.0092 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 AANQ01000006_00029 - 335 0.019 15.1 0.0 1 1 6.3e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 AANQ01000006_00029 - 335 0.021 13.8 0.0 1 1 6.1e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 AANQ01000006_00029 - 335 0.022 14.8 0.1 1 1 9.7e-05 0.054 13.5 0.0 5 50 147 186 135 244 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 AANQ01000006_00029 - 335 0.024 14.4 0.0 1 1 9e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 AANQ01000006_00029 - 335 0.026 14.2 0.0 1 1 9.6e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 AANQ01000006_00029 - 335 0.037 13.5 0.0 1 1 0.00011 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 AANQ01000006_00029 - 335 0.039 14.0 0.1 1 1 0.00019 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 AANQ01000006_00029 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 AANQ01000006_00029 - 335 0.046 13.0 0.0 1 1 0.00014 0.08 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin RNA_helicase PF00910.22 107 AANQ01000006_00029 - 335 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase PRK PF00485.18 197 AANQ01000006_00029 - 335 0.056 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 AANQ01000006_00029 - 335 0.066 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 AANQ01000006_00029 - 335 0.074 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 AANQ01000006_00029 - 335 0.088 12.7 0.0 1 1 0.00035 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 AANQ01000006_00029 - 335 0.097 12.6 0.5 1 1 0.00043 0.24 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 AANQ01000006_00029 - 335 0.11 12.4 0.1 1 1 0.00041 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 AANQ01000006_00029 - 335 0.13 12.8 0.1 1 1 0.00069 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 AANQ01000006_00029 - 335 0.15 11.7 0.0 1 1 0.00042 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 AANQ01000006_00029 - 335 0.15 11.8 0.0 1 1 0.00043 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 AANQ01000006_00029 - 335 0.35 11.3 3.8 1 2 2.6 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 AANQ01000006_00029 - 335 0.35 11.3 3.8 2 2 0.00066 0.37 11.3 1.3 22 37 163 178 160 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 AANQ01000006_00030 - 603 1.4e-105 353.8 0.1 1 1 3.2e-109 1.9e-105 353.4 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 AANQ01000006_00030 - 603 1.1e-24 86.8 0.0 1 1 3.5e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 AANQ01000006_00030 - 603 6.2e-16 58.3 0.0 1 2 1.2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 AANQ01000006_00030 - 603 6.2e-16 58.3 0.0 2 2 1.9e-14 1.1e-10 41.0 0.0 187 370 347 532 308 543 0.80 Type IV secretion-system coupling protein DNA-binding domain Cag12 PF13117.6 97 AANQ01000006_00031 - 143 1e-16 61.2 0.1 1 1 1.5e-20 1.3e-16 60.8 0.1 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 AANQ01000006_00031 - 143 0.062 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 AANQ01000006_00032 - 252 9.5e-39 132.8 1.2 1 1 6.7e-43 1.2e-38 132.5 1.2 1 154 25 190 25 192 0.91 TrbM PRELI PF04707.14 157 AANQ01000006_00033 - 266 0.02 14.7 1.4 1 2 1 3.7e+03 -2.4 0.0 9 19 35 45 8 65 0.59 PRELI-like family PRELI PF04707.14 157 AANQ01000006_00033 - 266 0.02 14.7 1.4 2 2 9.1e-06 0.033 14.0 0.3 96 155 84 148 78 150 0.87 PRELI-like family Prismane PF03063.20 511 AANQ01000006_00033 - 266 0.14 10.8 0.0 1 1 5.3e-05 0.19 10.4 0.0 75 191 94 216 78 231 0.73 Prismane/CO dehydrogenase family TACC_C PF05010.14 201 AANQ01000006_00033 - 266 2.1 8.1 10.2 1 2 0.001 3.7 7.3 8.3 13 125 2 113 1 138 0.78 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 AANQ01000006_00033 - 266 2.1 8.1 10.2 2 2 0.11 4e+02 0.6 2.0 8 45 101 140 94 176 0.68 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Mod_r PF07200.13 146 AANQ01000006_00033 - 266 4.9 7.3 12.2 1 3 0.0061 22 5.1 1.6 41 134 8 102 1 107 0.62 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 AANQ01000006_00033 - 266 4.9 7.3 12.2 2 3 0.0012 4.4 7.4 3.2 78 135 104 161 91 165 0.78 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 AANQ01000006_00033 - 266 4.9 7.3 12.2 3 3 0.47 1.7e+03 -1.0 0.0 65 88 207 230 204 259 0.71 Modifier of rudimentary (Mod(r)) protein IFT20 PF14931.6 119 AANQ01000006_00033 - 266 5.9 7.1 10.6 1 3 0.14 5.1e+02 0.8 0.3 25 46 24 45 1 56 0.48 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 AANQ01000006_00033 - 266 5.9 7.1 10.6 2 3 0.00037 1.3 9.2 0.8 25 54 90 119 82 127 0.89 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 AANQ01000006_00033 - 266 5.9 7.1 10.6 3 3 0.042 1.5e+02 2.5 0.2 23 43 121 141 116 165 0.75 Intraflagellar transport complex B, subunit 20 KH_5 PF13184.6 69 AANQ01000006_00034 - 47 0.003 17.6 0.2 1 1 3.8e-07 0.0034 17.4 0.2 4 38 2 36 1 41 0.94 NusA-like KH domain DUF5526 PF17664.1 168 AANQ01000006_00034 - 47 0.027 14.0 0.2 1 1 3.2e-06 0.029 13.9 0.2 99 126 10 38 4 45 0.84 Family of unknown function (DUF5526) Redoxin PF08534.10 147 AANQ01000006_00035 - 206 0.029 14.1 0.9 1 2 0.055 4.9e+02 0.4 0.1 119 146 11 36 4 37 0.82 Redoxin Redoxin PF08534.10 147 AANQ01000006_00035 - 206 0.029 14.1 0.9 2 2 2e-05 0.18 11.5 0.1 49 76 144 173 137 191 0.79 Redoxin YnfE PF17452.2 78 AANQ01000006_00035 - 206 0.12 12.6 0.1 1 3 1.4e-05 0.12 12.6 0.1 11 33 10 32 5 47 0.88 Uncharacterized YnfE-like YnfE PF17452.2 78 AANQ01000006_00035 - 206 0.12 12.6 0.1 2 3 0.2 1.8e+03 -0.7 0.3 36 50 143 157 136 185 0.64 Uncharacterized YnfE-like YnfE PF17452.2 78 AANQ01000006_00035 - 206 0.12 12.6 0.1 3 3 0.56 5e+03 -2.1 1.5 26 38 184 195 170 205 0.48 Uncharacterized YnfE-like Topoisom_bac PF01131.20 413 AANQ01000006_00036 - 730 3.2e-97 326.1 8.5 1 1 4.3e-100 4.5e-97 325.7 8.5 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 AANQ01000006_00036 - 730 4.4e-12 46.1 2.4 1 2 7e-15 7.3e-12 45.4 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 AANQ01000006_00036 - 730 4.4e-12 46.1 2.4 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 AANQ01000006_00036 - 730 5.7e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 AANQ01000006_00036 - 730 5.7e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 AANQ01000006_00036 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 AANQ01000006_00036 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 AANQ01000006_00036 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 AANQ01000006_00036 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 AANQ01000006_00036 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 AANQ01000006_00036 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 AANQ01000006_00036 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 AANQ01000006_00036 - 730 0.038 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 AANQ01000006_00036 - 730 0.038 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain EF-hand_8 PF13833.6 55 AANQ01000006_00036 - 730 0.052 13.4 0.0 1 1 0.00015 0.16 11.9 0.0 25 53 93 121 85 123 0.91 EF-hand domain pair zf-C2H2_4 PF13894.6 24 AANQ01000006_00036 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 AANQ01000006_00036 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 AANQ01000006_00036 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 AANQ01000006_00036 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 AANQ01000006_00036 - 730 0.09 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 AANQ01000006_00036 - 730 0.09 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 AANQ01000006_00036 - 730 0.43 10.8 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 AANQ01000006_00036 - 730 0.43 10.8 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 AANQ01000006_00036 - 730 0.43 10.8 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 AANQ01000006_00036 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 AANQ01000006_00036 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 AANQ01000006_00036 - 730 0.63 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 AANQ01000006_00036 - 730 0.63 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 AANQ01000006_00036 - 730 0.73 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 AANQ01000006_00036 - 730 0.73 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 AANQ01000006_00036 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 AANQ01000006_00036 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 AANQ01000006_00036 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 AANQ01000006_00036 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 AANQ01000006_00037 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 AANQ01000006_00037 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 AANQ01000006_00039 - 639 1.2e-59 201.1 0.3 1 1 9.5e-63 1.7e-59 200.6 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 AANQ01000006_00039 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 AANQ01000006_00039 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 AANQ01000006_00039 - 639 1.3e-16 60.4 0.0 1 1 1.7e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 AANQ01000006_00039 - 639 2.2e-12 46.9 0.1 1 1 2.8e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 AANQ01000006_00039 - 639 9.9e-07 28.8 0.1 1 1 1.3e-09 2.3e-06 27.7 0.1 4 114 8 129 5 129 0.80 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 AANQ01000006_00039 - 639 0.00055 20.3 0.0 1 1 7.4e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 AANQ01000006_00039 - 639 0.0092 15.8 0.0 1 1 1.1e-05 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 AANQ01000006_00039 - 639 0.02 14.2 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 AANQ01000006_00039 - 639 0.049 12.9 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 109 0.84 AIG1 family FeoB_N PF02421.18 156 AANQ01000006_00039 - 639 0.11 12.0 0.2 1 1 0.00025 0.45 10.0 0.1 32 117 53 132 45 163 0.73 Ferrous iron transport protein B Papo_T_antigen PF02380.15 93 AANQ01000006_00040 - 88 0.00028 21.0 1.6 1 1 5.9e-08 0.00035 20.7 1.6 51 74 44 66 28 83 0.87 T-antigen specific domain CEBP_ZZ PF16366.5 61 AANQ01000006_00040 - 88 0.022 15.0 2.6 1 1 5e-06 0.03 14.6 2.6 13 53 28 66 25 74 0.79 Cytoplasmic polyadenylation element-binding protein ZZ domain DUF1272 PF06906.11 57 AANQ01000006_00040 - 88 0.049 13.7 3.8 1 1 1.2e-05 0.074 13.1 3.8 8 39 29 58 26 65 0.90 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 AANQ01000006_00041 - 186 2.9e-05 24.1 0.4 1 2 1.4e-07 0.00063 19.7 0.1 3 27 2 26 1 37 0.91 AAA domain AAA_31 PF13614.6 177 AANQ01000006_00041 - 186 2.9e-05 24.1 0.4 2 2 0.023 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 AANQ01000006_00041 - 186 0.00046 20.3 0.8 1 1 1.1e-06 0.0047 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 AANQ01000006_00041 - 186 0.037 13.5 0.0 1 1 1.1e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 AANQ01000006_00041 - 186 0.12 12.7 0.0 1 1 4.5e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain RHH_7 PF16777.5 74 AANQ01000006_00042 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 AANQ01000006_00042 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal PDDEXK_9 PF08011.11 105 AANQ01000006_00043 - 159 0.017 15.0 0.2 1 1 1.8e-06 0.032 14.1 0.2 11 77 38 106 34 128 0.82 PD-(D/E)XK nuclease superfamily DUF5445 PF17520.2 52 AANQ01000006_00044 - 77 1 9.2 12.2 1 1 7.3e-05 1.3 8.9 11.2 7 36 43 71 41 74 0.88 Family of unknown function (DUF5445) Adenyl_transf PF04439.12 279 AJ489618_00001 - 233 6.7e-81 271.5 0.9 1 1 4.2e-85 7.6e-81 271.3 0.9 70 278 1 207 1 208 0.99 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 AJ489618_00002 - 180 7.8e-21 74.5 0.1 1 1 6.3e-24 1e-20 74.1 0.1 14 117 53 153 34 153 0.81 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 AJ489618_00002 - 180 1.4e-13 51.1 0.1 1 1 1.4e-16 2.4e-13 50.3 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 AJ489618_00002 - 180 2.6e-12 46.8 0.0 1 1 2.2e-15 3.6e-12 46.3 0.0 24 107 65 154 46 159 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 AJ489618_00002 - 180 3e-10 40.5 1.6 1 1 2.2e-13 3.6e-10 40.2 1.6 31 152 54 171 26 174 0.83 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 AJ489618_00002 - 180 0.00021 21.4 0.0 1 1 2.5e-07 0.0004 20.4 0.0 6 58 79 130 49 132 0.88 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 138 AJ489618_00002 - 180 0.00052 20.7 0.0 1 1 3.9e-07 0.00064 20.4 0.0 52 138 71 154 28 154 0.73 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 128 AJ489618_00002 - 180 0.0019 18.3 0.0 1 1 4.8e-06 0.0078 16.3 0.0 21 126 50 154 46 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 AJ489618_00002 - 180 0.015 15.3 0.0 1 1 1.4e-05 0.024 14.6 0.0 21 78 96 154 91 164 0.86 FR47-like protein Acetyltransf_15 PF17013.5 210 AJ489618_00002 - 180 0.035 13.6 0.2 1 1 6.5e-05 0.11 12.0 0.2 72 139 96 156 44 174 0.69 Putative acetyl-transferase Acetyltransf_8 PF13523.6 145 AJ489618_00002 - 180 0.042 13.5 0.0 1 2 0.11 1.8e+02 1.8 0.0 15 57 44 85 42 96 0.86 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 145 AJ489618_00002 - 180 0.042 13.5 0.0 2 2 0.0004 0.64 9.7 0.0 89 139 106 155 100 160 0.91 Acetyltransferase (GNAT) domain PanZ PF12568.8 128 AJ489618_00002 - 180 0.08 12.7 0.0 1 1 6.9e-05 0.11 12.2 0.0 43 121 77 154 47 163 0.72 Acetyltransferase (GNAT) domain, PanZ APH PF01636.23 240 AJ489618_00003 - 264 4.5e-26 92.2 0.0 1 1 8.7e-30 5.2e-26 92.0 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 AJ489618_00003 - 264 0.0022 17.6 0.0 1 1 6e-07 0.0036 16.9 0.0 134 198 171 236 99 244 0.77 Choline/ethanolamine kinase RIO1 PF01163.22 188 AJ489618_00003 - 264 0.0099 15.5 0.0 1 2 0.0022 13 5.3 0.0 48 116 50 120 26 127 0.74 RIO1 family RIO1 PF01163.22 188 AJ489618_00003 - 264 0.0099 15.5 0.0 2 2 0.00029 1.8 8.2 0.0 123 153 182 213 157 230 0.77 RIO1 family HTH_11 PF08279.12 55 AJ489618_00004 - 67 0.00042 20.2 0.1 1 1 6.3e-08 0.00056 19.8 0.1 1 28 6 32 6 34 0.95 HTH domain HTH_24 PF13412.6 48 AJ489618_00004 - 67 0.096 12.3 0.3 1 1 1.6e-05 0.14 11.7 0.3 7 30 9 32 1 32 0.93 Winged helix-turn-helix DNA-binding Resolvase PF00239.21 146 AJ490186_00001 - 212 4.3e-18 65.8 0.3 1 1 2.8e-21 7.1e-18 65.1 0.3 2 136 65 195 64 204 0.84 Resolvase, N terminal domain MerR PF00376.23 38 AJ490186_00001 - 212 1.5e-12 47.1 0.0 1 1 9.6e-16 2.4e-12 46.4 0.0 1 38 6 43 6 43 0.99 MerR family regulatory protein MerR_1 PF13411.6 69 AJ490186_00001 - 212 6e-11 42.3 0.0 1 2 6.7e-14 1.7e-10 40.8 0.0 2 47 6 52 5 69 0.92 MerR HTH family regulatory protein MerR_1 PF13411.6 69 AJ490186_00001 - 212 6e-11 42.3 0.0 2 2 2.2 5.7e+03 -2.5 0.0 51 64 89 102 81 106 0.75 MerR HTH family regulatory protein HTH_17 PF12728.7 51 AJ490186_00001 - 212 0.00043 20.4 0.0 1 1 3.2e-07 0.00082 19.5 0.0 1 44 4 49 4 62 0.91 Helix-turn-helix domain NTPase_P4 PF11602.8 320 AJ490186_00001 - 212 0.0027 17.0 0.0 1 1 1.3e-06 0.0034 16.6 0.0 48 141 53 142 30 163 0.82 ATPase P4 of dsRNA bacteriophage phi-12 PIN_2 PF10130.9 133 AJ490186_00001 - 212 0.063 13.5 1.4 1 2 1.8 4.5e+03 -2.2 0.0 78 94 61 77 45 81 0.68 PIN domain PIN_2 PF10130.9 133 AJ490186_00001 - 212 0.063 13.5 1.4 2 2 3.3e-05 0.083 13.1 0.4 7 89 117 201 114 205 0.88 PIN domain HTH_23 PF13384.6 50 AJ490186_00001 - 212 0.068 13.0 0.0 1 2 0.00012 0.31 10.9 0.0 18 37 5 24 2 29 0.89 Homeodomain-like domain HTH_23 PF13384.6 50 AJ490186_00001 - 212 0.068 13.0 0.0 2 2 0.95 2.4e+03 -1.5 0.0 9 25 84 102 77 103 0.71 Homeodomain-like domain OrfB_Zn_ribbon PF07282.11 69 AJ490186_00002 - 427 2.1e-22 78.8 0.9 1 1 9.4e-26 4.2e-22 77.8 0.9 1 68 313 382 313 383 0.97 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 AJ490186_00002 - 427 2.7e-18 66.4 4.5 1 2 6.2e-22 2.8e-18 66.3 2.3 4 117 174 299 171 301 0.85 Probable transposase OrfB_IS605 PF01385.19 120 AJ490186_00002 - 427 2.7e-18 66.4 4.5 2 2 2.7 1.2e+04 -3.5 0.0 22 35 406 419 396 421 0.76 Probable transposase HTH_OrfB_IS605 PF12323.8 47 AJ490186_00002 - 427 7.7e-15 54.1 0.3 1 1 5e-18 2.2e-14 52.6 0.3 5 47 12 54 8 54 0.95 Helix-turn-helix domain Zn_Tnp_IS1595 PF12760.7 46 AJ490186_00002 - 427 0.036 14.0 2.2 1 1 1.6e-05 0.071 13.1 2.2 13 44 336 367 332 369 0.89 Transposase zinc-ribbon domain APH PF01636.23 240 AJ490186_00003 - 264 5.9e-26 91.8 0.0 1 1 1.1e-29 6.9e-26 91.6 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 AJ490186_00003 - 264 0.0018 17.9 0.0 1 1 4.9e-07 0.0029 17.2 0.0 134 198 171 236 104 244 0.77 Choline/ethanolamine kinase RIO1 PF01163.22 188 AJ490186_00003 - 264 0.018 14.7 0.0 1 2 0.0029 17 4.9 0.0 49 116 51 120 29 130 0.66 RIO1 family RIO1 PF01163.22 188 AJ490186_00003 - 264 0.018 14.7 0.0 2 2 0.0005 3 7.4 0.0 128 152 187 212 166 230 0.81 RIO1 family PRELI PF04707.14 157 AVFM02000066_00001 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 AVFM02000066_00001 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 AVFM02000066_00001 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 AVFM02000066_00001 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 AVFM02000066_00001 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 AVFM02000066_00001 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Relaxase PF03432.14 242 AVFM02000068_00001 - 456 2.8e-10 40.2 7.9 1 2 4.7e-14 2.8e-10 40.2 7.9 48 232 119 299 70 307 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 AVFM02000068_00001 - 456 2.8e-10 40.2 7.9 2 2 0.0042 25 4.4 3.1 126 180 345 403 320 418 0.81 Relaxase/Mobilisation nuclease domain AdenylateSensor PF16579.5 117 AVFM02000068_00001 - 456 0.15 12.5 7.3 1 3 0.0017 10 6.6 0.0 17 76 104 167 96 193 0.75 Adenylate sensor of SNF1-like protein kinase AdenylateSensor PF16579.5 117 AVFM02000068_00001 - 456 0.15 12.5 7.3 2 3 0.00062 3.7 8.0 0.5 16 70 203 257 194 284 0.86 Adenylate sensor of SNF1-like protein kinase AdenylateSensor PF16579.5 117 AVFM02000068_00001 - 456 0.15 12.5 7.3 3 3 0.21 1.2e+03 -0.1 0.2 32 56 347 371 308 387 0.70 Adenylate sensor of SNF1-like protein kinase Endostatin PF06482.11 315 AVFM02000068_00001 - 456 1.1 8.6 7.0 1 2 0.2 1.2e+03 -1.3 0.1 71 71 177 177 52 291 0.62 Collagenase NC10 and Endostatin Endostatin PF06482.11 315 AVFM02000068_00001 - 456 1.1 8.6 7.0 2 2 3.4e-05 0.2 11.1 3.1 54 158 324 434 270 448 0.57 Collagenase NC10 and Endostatin Helicase_C PF00271.31 111 AVFM02000069_00001 - 404 0.0015 18.9 0.0 1 4 8.1e-08 0.0015 18.9 0.0 63 111 2 52 1 52 0.85 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 AVFM02000069_00001 - 404 0.0015 18.9 0.0 2 4 0.28 5.1e+03 -2.2 0.1 26 26 187 187 138 236 0.60 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 AVFM02000069_00001 - 404 0.0015 18.9 0.0 3 4 0.1 1.9e+03 -0.8 0.1 14 45 221 254 206 265 0.63 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 AVFM02000069_00001 - 404 0.0015 18.9 0.0 4 4 0.16 2.8e+03 -1.4 0.1 21 66 309 359 289 366 0.51 Helicase conserved C-terminal domain efb-c PF12199.8 65 AVFM02000069_00002 - 49 0.05 13.7 0.3 1 1 3.9e-06 0.07 13.2 0.3 40 62 4 26 1 29 0.93 Extracellular fibrinogen binding protein C terminal Toprim PF01751.22 103 AVFM02000070_00001 - 178 3.2e-13 49.8 0.0 1 1 7.3e-17 4.3e-13 49.4 0.0 2 102 3 133 2 134 0.91 Toprim domain Topoisom_bac PF01131.20 413 AVFM02000070_00001 - 178 0.008 15.2 0.0 1 1 2e-06 0.012 14.6 0.0 5 27 154 176 151 178 0.89 DNA topoisomerase EF-hand_8 PF13833.6 55 AVFM02000070_00001 - 178 0.019 14.8 0.0 1 1 7.6e-06 0.046 13.6 0.0 26 53 94 121 86 123 0.91 EF-hand domain pair SNF2_N PF00176.23 350 AVFM02000073_00001 - 441 1.2e-10 40.6 0.2 1 1 1.2e-13 3.1e-10 39.3 0.2 57 191 223 400 140 409 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 AVFM02000073_00001 - 441 6.1e-10 39.4 9.3 1 1 7.2e-12 1.8e-08 34.5 9.2 2 146 205 400 204 437 0.78 Type III restriction enzyme, res subunit DEAD PF00270.29 176 AVFM02000073_00001 - 441 5.8e-07 29.4 0.4 1 2 1.2e-07 0.0003 20.6 0.0 2 108 209 314 208 318 0.76 DEAD/DEAH box helicase DEAD PF00270.29 176 AVFM02000073_00001 - 441 5.8e-07 29.4 0.4 2 2 0.0025 6.4 6.5 0.3 88 135 350 400 315 412 0.66 DEAD/DEAH box helicase AAA_11 PF13086.6 261 AVFM02000073_00001 - 441 0.0032 17.3 4.6 1 2 0.0011 2.8 7.6 0.1 2 42 207 247 206 292 0.63 AAA domain AAA_11 PF13086.6 261 AVFM02000073_00001 - 441 0.0032 17.3 4.6 2 2 0.0004 1 9.1 3.0 149 226 301 395 275 397 0.79 AAA domain Tup_N PF08581.10 77 AVFM02000073_00001 - 441 0.072 13.4 0.3 1 4 2.7 7e+03 -2.6 0.0 52 75 11 34 9 36 0.71 Tup N-terminal Tup_N PF08581.10 77 AVFM02000073_00001 - 441 0.072 13.4 0.3 2 4 2 5e+03 -2.1 0.1 7 14 155 162 151 188 0.59 Tup N-terminal Tup_N PF08581.10 77 AVFM02000073_00001 - 441 0.072 13.4 0.3 3 4 2.8e-05 0.072 13.4 0.3 25 76 290 342 271 343 0.75 Tup N-terminal Tup_N PF08581.10 77 AVFM02000073_00001 - 441 0.072 13.4 0.3 4 4 0.032 82 3.6 0.2 41 59 360 378 344 380 0.76 Tup N-terminal CLZ PF16526.5 71 AVFM02000073_00001 - 441 1.5 9.3 4.7 1 2 0.28 7.1e+02 0.7 0.1 19 45 11 37 3 46 0.81 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CLZ PF16526.5 71 AVFM02000073_00001 - 441 1.5 9.3 4.7 2 2 0.00099 2.5 8.5 1.4 13 58 333 378 326 379 0.92 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF1690 PF07956.11 139 AVFM02000073_00001 - 441 1.8 9.0 6.3 1 3 3.1 7.9e+03 -2.8 0.1 32 63 3 34 2 43 0.60 Protein of Unknown function (DUF1690) DUF1690 PF07956.11 139 AVFM02000073_00001 - 441 1.8 9.0 6.3 2 3 0.069 1.8e+02 2.5 0.1 23 69 167 213 142 232 0.85 Protein of Unknown function (DUF1690) DUF1690 PF07956.11 139 AVFM02000073_00001 - 441 1.8 9.0 6.3 3 3 0.00076 2 8.9 0.6 46 102 324 377 317 386 0.85 Protein of Unknown function (DUF1690) Eco57I PF07669.11 106 AVFM02000073_00002 - 653 1.3e-05 25.6 0.2 1 1 5.8e-09 5.2e-05 23.7 0.2 3 103 372 472 370 475 0.80 Eco57I restriction-modification methylase MTS PF05175.14 169 AVFM02000073_00002 - 653 0.0038 16.8 0.0 1 1 1e-06 0.0091 15.6 0.0 31 140 309 422 299 442 0.72 Methyltransferase small domain RHH_7 PF16777.5 74 AVFM02000073_00003 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 AVFM02000073_00003 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal Cag12 PF13117.6 97 AVFM02000074_00002 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 AVFM02000074_00002 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 AVFM02000074_00002 - 145 0.08 12.7 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 AVFM02000074_00002 - 145 3.9 7.4 5.6 1 2 0.00081 3.6 7.5 2.3 36 49 29 42 2 47 0.91 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 AVFM02000074_00002 - 145 3.9 7.4 5.6 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 AVFM02000074_00003 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 AVFM02000074_00003 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 AVFM02000074_00003 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 AVFM02000074_00003 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 AVFM02000074_00003 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 AVFM02000074_00004 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 AVFM02000074_00004 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 AVFM02000074_00004 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 AVFM02000074_00004 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 AVFM02000074_00004 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 AVFM02000074_00004 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 AVFM02000074_00004 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 AVFM02000074_00004 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 AVFM02000074_00004 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 AVFM02000074_00004 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 AVFM02000074_00004 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 AVFM02000074_00004 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 AVFM02000074_00004 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 AVFM02000074_00004 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 AVFM02000074_00004 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 AVFM02000074_00004 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 AVFM02000074_00004 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 AVFM02000074_00004 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 AVFM02000074_00004 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 AVFM02000074_00004 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 AVFM02000074_00004 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 AVFM02000074_00004 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 AVFM02000074_00004 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 AVFM02000074_00004 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 AVFM02000074_00004 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 AVFM02000074_00004 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 AVFM02000074_00004 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 AVFM02000074_00004 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 AVFM02000074_00004 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 AVFM02000074_00004 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 AVFM02000074_00004 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 AVFM02000074_00004 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 AVFM02000074_00005 - 319 1.9e-48 164.8 0.1 1 1 3.6e-52 3.2e-48 164.1 0.1 1 187 122 303 122 303 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 AVFM02000074_00005 - 319 0.022 13.8 0.1 1 1 3.6e-06 0.032 13.3 0.1 31 81 250 300 233 305 0.89 HaeIII restriction endonuclease HNOBA PF07701.14 221 AVFM02000075_00001 - 167 0.077 12.4 0.0 1 1 2e-05 0.12 11.8 0.0 109 153 40 89 14 99 0.75 Heme NO binding associated cEGF PF12662.7 24 AVFM02000075_00001 - 167 0.081 12.9 0.0 1 1 2.2e-05 0.13 12.2 0.0 14 24 4 15 1 15 0.81 Complement Clr-like EGF-like bZIP_1 PF00170.21 64 AVFM02000075_00001 - 167 0.79 9.9 4.9 1 2 0.0056 34 4.6 0.3 28 57 26 55 23 61 0.84 bZIP transcription factor bZIP_1 PF00170.21 64 AVFM02000075_00001 - 167 0.79 9.9 4.9 2 2 0.001 6.3 7.0 0.5 36 57 144 165 141 167 0.90 bZIP transcription factor Phage_pRha PF09669.10 88 AVFM02000075_00002 - 185 1.5e-28 99.2 0.0 1 1 2.6e-32 2.3e-28 98.6 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 AVFM02000075_00002 - 185 0.0018 18.4 0.0 1 1 4.2e-07 0.0038 17.3 0.0 23 90 27 94 22 96 0.90 Uncharacterized protein conserved in archaea (DUF2250) DUF3251 PF11622.8 165 AVFM02000075_00003 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 AVFM02000075_00003 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 AVFM02000075_00003 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 AVFM02000075_00003 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 AVFM02000075_00003 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 AVFM02000075_00003 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 AVFM02000075_00003 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 AVFM02000075_00003 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 AVFM02000075_00003 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 AVFM02000075_00003 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 AVFM02000075_00003 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 AVFM02000075_00003 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 AVFM02000075_00003 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 AVFM02000075_00003 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 AVFM02000075_00004 - 140 2.6e-25 88.5 0.1 1 1 1.9e-29 3.5e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 AVFM02000075_00005 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 AVFM02000075_00005 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 AVFM02000075_00005 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 AVFM02000075_00005 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 AVFM02000075_00005 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 AVFM02000075_00005 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 AVFM02000075_00005 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 AVFM02000075_00006 - 328 5e-28 98.9 13.9 1 1 2.4e-31 7.2e-28 98.3 13.9 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 AVFM02000075_00006 - 328 0.0042 17.2 1.4 1 3 0.88 2.6e+03 -1.4 0.0 30 53 134 157 122 164 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 AVFM02000075_00006 - 328 0.0042 17.2 1.4 2 3 5.4e-06 0.016 15.3 0.1 18 82 195 259 188 263 0.92 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 AVFM02000075_00006 - 328 0.0042 17.2 1.4 3 3 1.2 3.7e+03 -1.9 0.0 62 79 302 319 292 327 0.75 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 AVFM02000075_00006 - 328 0.007 17.1 5.8 1 2 0.034 1e+02 3.6 0.5 93 135 105 145 40 182 0.61 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 AVFM02000075_00006 - 328 0.007 17.1 5.8 2 2 2.3e-06 0.007 17.1 5.8 47 125 219 315 203 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 AVFM02000075_00006 - 328 0.092 13.4 3.4 1 2 1.7 5.1e+03 -1.9 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 AVFM02000075_00006 - 328 0.092 13.4 3.4 2 2 2.6e-05 0.078 13.6 1.0 32 84 209 270 202 295 0.83 von Willebrand factor type A domain Phage_holin_6_1 PF09682.10 101 AVFM02000075_00006 - 328 0.13 12.7 8.7 1 2 9.1e-05 0.27 11.7 0.3 4 62 77 136 75 154 0.81 Bacteriophage holin of superfamily 6 (Holin_LLH) Phage_holin_6_1 PF09682.10 101 AVFM02000075_00006 - 328 0.13 12.7 8.7 2 2 0.017 51 4.4 2.4 36 90 268 323 251 327 0.83 Bacteriophage holin of superfamily 6 (Holin_LLH) DUF3752 PF12572.8 152 AVFM02000075_00006 - 328 2.8 8.5 8.6 1 2 0.0033 9.9 6.7 0.4 21 49 106 136 98 153 0.70 Protein of unknown function (DUF3752) DUF3752 PF12572.8 152 AVFM02000075_00006 - 328 2.8 8.5 8.6 2 2 0.01 31 5.1 2.6 33 106 233 320 218 328 0.76 Protein of unknown function (DUF3752) TrbL PF04610.14 215 AVFM02000075_00007 - 330 2.7e-29 102.5 30.5 1 1 3e-33 2.7e-29 102.5 30.5 1 214 38 250 38 251 0.92 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 AVFM02000075_00007 - 330 0.21 11.4 1.5 1 2 0.13 1.2e+03 -0.6 0.1 38 65 68 101 59 114 0.50 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 AVFM02000075_00007 - 330 0.21 11.4 1.5 2 2 7.3e-05 0.65 9.8 0.1 29 81 232 286 201 298 0.76 T-cell leukemia translocation-altered Trep_dent_lipo PF09710.10 397 AVFM02000075_00008 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 AVFM02000075_00008 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 AVFM02000075_00009 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 AVFM02000075_00009 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 AVFM02000075_00010 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 AVFM02000075_00010 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 AVFM02000075_00010 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) SSB PF00436.25 104 AVFM02000076_00001 - 153 1.3e-23 83.0 0.0 1 1 3.7e-27 1.7e-23 82.7 0.0 1 103 1 104 1 105 0.98 Single-strand binding protein family DnaJ-X PF14308.6 211 AVFM02000076_00001 - 153 0.0027 17.2 0.1 1 1 8.3e-07 0.0037 16.7 0.1 61 133 61 133 60 149 0.72 X-domain of DnaJ-containing Colicin_Ia PF11504.8 72 AVFM02000076_00001 - 153 0.11 12.7 0.1 1 2 0.38 1.7e+03 -0.8 0.0 39 50 28 39 19 42 0.80 Colicin Ia Colicin_Ia PF11504.8 72 AVFM02000076_00001 - 153 0.11 12.7 0.1 2 2 0.00011 0.48 10.6 0.0 27 53 68 93 50 104 0.81 Colicin Ia DUF1981 PF09324.10 84 AVFM02000076_00001 - 153 0.14 12.1 0.0 1 1 5.2e-05 0.23 11.3 0.0 47 72 86 111 78 115 0.83 Domain of unknown function (DUF1981) DUF4389 PF14333.6 76 AVFM02000076_00002 - 61 0.054 13.4 3.8 1 1 2.7e-05 0.08 12.9 3.8 15 53 2 40 1 48 0.93 Domain of unknown function (DUF4389) DUF2512 PF10710.9 136 AVFM02000076_00002 - 61 0.12 12.1 6.0 1 1 4.5e-05 0.13 11.9 6.0 62 102 6 46 2 52 0.92 Protein of unknown function (DUF2512) TctB PF07331.11 135 AVFM02000076_00002 - 61 0.53 10.6 9.7 1 1 0.00019 0.56 10.5 9.7 83 131 4 53 1 56 0.69 Tripartite tricarboxylate transporter TctB family LptF_LptG PF03739.14 354 AVFM02000076_00002 - 61 7.6 5.3 10.9 1 1 0.0028 8.3 5.1 10.9 276 322 3 53 1 56 0.76 Lipopolysaccharide export system permease LptF/LptG DUF1129 PF06570.11 206 AVFM02000076_00002 - 61 7.9 5.9 8.5 1 1 0.003 9 5.7 8.5 151 197 2 48 1 53 0.66 Protein of unknown function (DUF1129) DUF4407 PF14362.6 298 AVFM02000076_00002 - 61 8.6 5.6 8.5 1 1 0.0033 10 5.4 8.5 19 54 5 43 2 47 0.87 Domain of unknown function (DUF4407) MgtE_N PF03448.17 102 AVFM02000077_00001 - 100 4e-05 24.2 0.3 1 2 0.0004 3.6 8.2 0.0 58 90 20 52 18 57 0.85 MgtE intracellular N domain MgtE_N PF03448.17 102 AVFM02000077_00001 - 100 4e-05 24.2 0.3 2 2 4.4e-06 0.039 14.6 0.3 50 77 55 82 52 85 0.91 MgtE intracellular N domain Com_YlbF PF06133.11 105 AVFM02000077_00001 - 100 0.0099 16.5 1.9 1 2 1 8.9e+03 -2.7 0.0 63 63 40 40 30 53 0.50 Control of competence regulator ComK, YlbF/YmcA Com_YlbF PF06133.11 105 AVFM02000077_00001 - 100 0.0099 16.5 1.9 2 2 1.1e-06 0.0099 16.5 1.9 3 44 57 98 56 100 0.94 Control of competence regulator ComK, YlbF/YmcA CpXC PF14353.6 118 AVFM02000077_00002 - 143 0.033 14.2 2.2 1 1 4.5e-06 0.041 13.9 2.2 2 62 9 75 8 140 0.72 CpXC protein A2L_zn_ribbon PF08792.10 33 AVFM02000077_00002 - 143 0.71 9.7 5.5 1 2 0.0053 48 3.8 0.5 2 10 6 14 5 18 0.78 A2L zinc ribbon domain A2L_zn_ribbon PF08792.10 33 AVFM02000077_00002 - 143 0.71 9.7 5.5 2 2 0.0003 2.7 7.8 0.6 5 15 46 56 44 59 0.89 A2L zinc ribbon domain T4SS PF07996.11 197 AVFM02000078_00001 - 318 3.4e-07 30.9 8.7 1 2 1.3e-10 3.4e-07 30.9 8.7 1 145 20 159 20 179 0.56 Type IV secretion system proteins T4SS PF07996.11 197 AVFM02000078_00001 - 318 3.4e-07 30.9 8.7 2 2 0.21 5.3e+02 0.9 13.8 135 181 214 260 160 267 0.64 Type IV secretion system proteins HBM PF16591.5 254 AVFM02000078_00001 - 318 0.0086 15.5 15.0 1 2 5.8e-06 0.015 14.7 0.2 195 240 27 72 18 81 0.90 Helical bimodular sensor domain HBM PF16591.5 254 AVFM02000078_00001 - 318 0.0086 15.5 15.0 2 2 0.013 32 3.8 9.6 43 137 141 240 117 266 0.72 Helical bimodular sensor domain HTH_16 PF12645.7 65 AVFM02000078_00001 - 318 0.053 13.6 0.4 1 2 0.24 6.2e+02 0.5 0.0 16 28 37 49 30 63 0.86 Helix-turn-helix domain HTH_16 PF12645.7 65 AVFM02000078_00001 - 318 0.053 13.6 0.4 2 2 0.00031 0.79 9.8 0.2 7 50 184 221 182 230 0.79 Helix-turn-helix domain NYD-SP28_assoc PF14775.6 60 AVFM02000078_00001 - 318 0.14 12.2 5.9 1 3 0.00033 0.84 9.8 0.5 23 52 31 60 27 67 0.90 Sperm tail C-terminal domain NYD-SP28_assoc PF14775.6 60 AVFM02000078_00001 - 318 0.14 12.2 5.9 2 3 0.79 2e+03 -1.0 0.0 30 45 69 84 63 87 0.69 Sperm tail C-terminal domain NYD-SP28_assoc PF14775.6 60 AVFM02000078_00001 - 318 0.14 12.2 5.9 3 3 0.044 1.1e+02 3.0 0.3 18 45 156 183 142 192 0.76 Sperm tail C-terminal domain GCN5L1 PF06320.13 114 AVFM02000078_00001 - 318 0.48 10.6 0.1 1 3 0.00019 0.48 10.6 0.1 65 108 28 71 24 77 0.72 GCN5-like protein 1 (GCN5L1) GCN5L1 PF06320.13 114 AVFM02000078_00001 - 318 0.48 10.6 0.1 2 3 0.0097 25 5.1 0.6 24 72 117 164 104 179 0.82 GCN5-like protein 1 (GCN5L1) GCN5L1 PF06320.13 114 AVFM02000078_00001 - 318 0.48 10.6 0.1 3 3 0.16 4.1e+02 1.1 2.1 19 59 212 255 199 267 0.64 GCN5-like protein 1 (GCN5L1) DUF2937 PF11157.8 162 AVFM02000078_00001 - 318 4.9 6.9 8.7 1 3 0.29 7.5e+02 -0.3 0.1 76 96 26 46 23 64 0.55 Protein of unknown function (DUF2937) DUF2937 PF11157.8 162 AVFM02000078_00001 - 318 4.9 6.9 8.7 2 3 0.0058 15 5.3 0.5 55 114 142 201 135 214 0.85 Protein of unknown function (DUF2937) DUF2937 PF11157.8 162 AVFM02000078_00001 - 318 4.9 6.9 8.7 3 3 0.0054 14 5.4 0.3 88 138 219 269 212 273 0.80 Protein of unknown function (DUF2937) FlxA PF14282.6 101 AVFM02000078_00001 - 318 7.4 6.6 29.5 1 4 0.0034 8.7 6.4 3.1 6 61 30 84 26 91 0.74 FlxA-like protein FlxA PF14282.6 101 AVFM02000078_00001 - 318 7.4 6.6 29.5 2 4 0.017 42 4.2 0.0 13 61 68 123 61 126 0.71 FlxA-like protein FlxA PF14282.6 101 AVFM02000078_00001 - 318 7.4 6.6 29.5 3 4 0.002 5.1 7.1 4.7 17 57 139 179 123 192 0.87 FlxA-like protein FlxA PF14282.6 101 AVFM02000078_00001 - 318 7.4 6.6 29.5 4 4 0.059 1.5e+02 2.4 5.0 8 39 209 242 202 258 0.62 FlxA-like protein FIVAR PF07554.13 71 AVFM02000078_00002 - 61 0.034 14.9 8.8 1 1 6.2e-06 0.056 14.2 8.8 13 62 6 57 3 57 0.81 FIVAR domain PRD PF00874.20 90 AVFM02000078_00002 - 61 0.077 13.3 4.1 1 1 1.1e-05 0.096 13.0 4.1 34 66 8 40 5 49 0.84 PRD domain T4SS-DNA_transf PF02534.14 469 AVFM02000079_00001 - 493 3e-58 197.8 2.6 1 1 2.7e-61 1.2e-57 195.8 2.6 46 364 137 479 94 487 0.81 Type IV secretory system Conjugative DNA transfer TrwB_AAD_bind PF10412.9 386 AVFM02000079_00001 - 493 4.2e-19 68.7 0.0 1 2 5.3e-06 0.024 13.6 0.0 49 148 167 282 136 290 0.68 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 AVFM02000079_00001 - 493 4.2e-19 68.7 0.0 2 2 5.4e-18 2.4e-14 53.1 0.0 141 308 315 483 297 487 0.83 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 126 AVFM02000079_00001 - 493 3e-14 53.1 0.0 1 2 0.26 1.2e+03 -0.5 0.0 22 38 370 386 357 388 0.83 TraM recognition site of TraD and TraG TraG-D_C PF12696.7 126 AVFM02000079_00001 - 493 3e-14 53.1 0.0 2 2 5.3e-17 2.4e-13 50.2 0.0 3 66 421 484 420 491 0.95 TraM recognition site of TraD and TraG DUF418 PF04235.12 163 AVFM02000079_00001 - 493 0.057 13.4 1.4 1 1 2e-05 0.091 12.7 1.4 13 75 7 70 1 79 0.91 Protein of unknown function (DUF418) VirB8 PF04335.13 214 AVFM02000080_00001 - 225 3.6e-29 102.1 0.9 1 1 2.3e-33 4.2e-29 101.9 0.9 23 213 26 208 13 209 0.88 VirB8 protein TrwB_AAD_bind PF10412.9 386 AVFM02000080_00003 - 197 6.4e-05 22.0 0.0 1 1 8.5e-09 7.6e-05 21.8 0.0 224 333 12 125 5 171 0.69 Type IV secretion-system coupling protein DNA-binding domain CNTF PF01110.17 194 AVFM02000080_00003 - 197 0.084 12.2 0.0 1 1 1.4e-05 0.12 11.7 0.0 34 108 45 124 39 140 0.76 Ciliary neurotrophic factor YsaB PF13983.6 75 AVFM02000081_00001 - 114 0.11 12.8 0.1 1 2 0.15 2.7e+03 -1.3 0.0 8 32 5 29 2 32 0.77 YsaB-like lipoprotein YsaB PF13983.6 75 AVFM02000081_00001 - 114 0.11 12.8 0.1 2 2 2.3e-05 0.42 10.9 0.2 24 50 51 79 48 95 0.85 YsaB-like lipoprotein CagX PF03524.15 211 AVFM02000082_00001 - 208 9.1e-26 90.9 0.7 1 1 1.7e-29 1e-25 90.7 0.7 34 210 11 199 1 200 0.83 Conjugal transfer protein DUF4905 PF16248.5 83 AVFM02000082_00001 - 208 0.055 13.4 0.1 1 1 3.4e-05 0.2 11.6 0.1 34 74 120 160 110 168 0.85 Domain of unknown function (DUF4905) Phosphodiest PF01663.22 357 AVFM02000082_00001 - 208 0.076 12.6 1.3 1 2 4.2e-05 0.25 10.9 1.1 255 316 62 125 42 170 0.72 Type I phosphodiesterase / nucleotide pyrophosphatase Phosphodiest PF01663.22 357 AVFM02000082_00001 - 208 0.076 12.6 1.3 2 2 0.11 6.8e+02 -0.4 0.0 58 86 167 193 165 205 0.77 Type I phosphodiesterase / nucleotide pyrophosphatase ETRAMP PF09716.10 83 AVFM02000082_00002 - 100 1.5 9.0 8.9 1 2 2e-05 0.36 10.9 1.5 2 49 2 47 1 53 0.84 Malarial early transcribed membrane protein (ETRAMP) ETRAMP PF09716.10 83 AVFM02000082_00002 - 100 1.5 9.0 8.9 2 2 0.0085 1.5e+02 2.5 1.0 46 57 86 97 75 99 0.69 Malarial early transcribed membrane protein (ETRAMP) TrbI PF03743.14 187 AVFM02000082_00003 - 180 8.1e-32 110.6 0.7 1 1 6e-36 1.1e-31 110.2 0.7 1 131 41 171 41 179 0.91 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 AVFM02000082_00004 - 65 1.8e-06 27.9 0.1 1 1 2.1e-10 1.9e-06 27.9 0.1 146 187 8 49 1 49 0.91 Bacterial conjugation TrbI-like protein TraH_2 PF06871.11 207 AVFM02000082_00004 - 65 0.06 13.0 0.2 1 2 0.00058 5.2 6.6 0.0 18 49 15 45 8 47 0.86 TraH_2 TraH_2 PF06871.11 207 AVFM02000082_00004 - 65 0.06 13.0 0.2 2 2 0.0018 16 5.0 0.0 115 131 48 64 45 65 0.92 TraH_2 FOXP-CC PF16159.5 69 AVFM02000082_00005 - 66 0.0033 18.0 0.3 1 1 8.4e-07 0.0038 17.8 0.3 31 64 22 55 4 58 0.82 FOXP coiled-coil domain MCR_C PF04609.12 271 AVFM02000082_00005 - 66 0.23 10.5 4.5 1 1 5.6e-05 0.25 10.4 4.5 193 242 2 51 1 60 0.93 Methyl-coenzyme M reductase operon protein C Allexi_40kDa PF05549.11 271 AVFM02000082_00005 - 66 0.66 9.4 4.9 1 1 0.00014 0.64 9.5 4.9 90 146 7 64 1 66 0.69 Allexivirus 40kDa protein Aida_N PF08910.10 103 AVFM02000082_00005 - 66 0.68 10.4 5.2 1 1 0.00016 0.71 10.3 5.2 24 85 4 64 1 66 0.87 Aida N-terminus TrbL PF04610.14 215 AVFM02000084_00002 - 382 1.5e-31 109.9 22.6 1 3 0.38 6.7e+03 -3.4 0.0 75 89 11 28 4 41 0.57 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 AVFM02000084_00002 - 382 1.5e-31 109.9 22.6 2 3 8.1e-36 1.5e-31 109.9 22.6 1 215 46 280 46 280 0.92 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 AVFM02000084_00002 - 382 1.5e-31 109.9 22.6 3 3 0.046 8.2e+02 -0.4 0.0 42 65 357 380 347 382 0.81 TrbL/VirB6 plasmid conjugal transfer protein Topoisom_bac PF01131.20 413 AVFM02000084_00003 - 133 2.2e-13 50.0 0.0 1 1 5e-17 3e-13 49.6 0.0 3 62 68 126 66 129 0.92 DNA topoisomerase Toprim PF01751.22 103 AVFM02000084_00003 - 133 4.4e-10 39.7 0.3 1 2 1.5e-13 9.2e-10 38.7 0.2 61 103 8 49 3 49 0.92 Toprim domain Toprim PF01751.22 103 AVFM02000084_00003 - 133 4.4e-10 39.7 0.3 2 2 1.1 6.9e+03 -2.7 0.0 40 44 90 94 58 111 0.58 Toprim domain Toprim_4 PF13662.6 89 AVFM02000084_00003 - 133 0.1 13.1 0.0 1 2 4.9e-05 0.29 11.6 0.0 54 76 10 32 2 45 0.76 Toprim domain Toprim_4 PF13662.6 89 AVFM02000084_00003 - 133 0.1 13.1 0.0 2 2 0.67 4e+03 -1.6 0.0 19 32 57 70 55 102 0.73 Toprim domain DUF2852 PF11014.8 122 AVFM02000085_00002 - 246 0.0052 16.9 1.5 1 3 0.3 1.1e+03 -0.2 0.3 98 114 5 22 2 41 0.55 Protein of unknown function (DUF2852) DUF2852 PF11014.8 122 AVFM02000085_00002 - 246 0.0052 16.9 1.5 2 3 1.5e-06 0.0052 16.9 1.5 41 107 88 156 62 159 0.80 Protein of unknown function (DUF2852) DUF2852 PF11014.8 122 AVFM02000085_00002 - 246 0.0052 16.9 1.5 3 3 0.4 1.4e+03 -0.6 0.0 30 63 181 213 177 227 0.73 Protein of unknown function (DUF2852) DUF5442 PF17514.2 107 AVFM02000085_00002 - 246 0.026 14.7 5.3 1 2 1.1 3.9e+03 -1.9 0.2 33 52 10 29 4 47 0.63 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 AVFM02000085_00002 - 246 0.026 14.7 5.3 2 2 7.1e-06 0.026 14.7 5.3 31 98 134 201 120 214 0.85 Family of unknown function (DUF5442) Stn1_C PF12659.7 120 AVFM02000085_00002 - 246 0.1 12.6 3.0 1 1 7e-05 0.25 11.3 3.0 6 52 142 189 137 237 0.82 Telomere capping C-terminal wHTH DUF1856 PF08983.10 48 AVFM02000085_00002 - 246 0.53 10.6 4.2 1 3 0.66 2.4e+03 -1.1 0.2 24 34 29 43 24 54 0.64 Domain of unknown function (DUF1856) DUF1856 PF08983.10 48 AVFM02000085_00002 - 246 0.53 10.6 4.2 2 3 0.002 7.3 6.9 0.5 1 14 78 91 78 104 0.91 Domain of unknown function (DUF1856) DUF1856 PF08983.10 48 AVFM02000085_00002 - 246 0.53 10.6 4.2 3 3 0.028 1e+02 3.2 0.0 11 20 154 163 144 168 0.82 Domain of unknown function (DUF1856) NifT PF06988.11 64 AVFM02000085_00002 - 246 7.3 6.5 6.9 1 3 0.19 6.7e+02 0.2 0.4 19 33 6 20 5 26 0.79 NifT/FixU protein NifT PF06988.11 64 AVFM02000085_00002 - 246 7.3 6.5 6.9 2 3 0.15 5.4e+02 0.5 0.1 20 52 152 186 139 191 0.67 NifT/FixU protein NifT PF06988.11 64 AVFM02000085_00002 - 246 7.3 6.5 6.9 3 3 0.00087 3.1 7.6 0.3 18 31 193 206 179 227 0.83 NifT/FixU protein Toprim_2 PF13155.6 90 AVFM02000085_00004 - 202 2.6e-13 50.2 0.9 1 2 0.19 4.8e+02 1.3 0.1 53 83 30 60 29 66 0.78 Toprim-like Toprim_2 PF13155.6 90 AVFM02000085_00004 - 202 2.6e-13 50.2 0.9 2 2 7.9e-16 2e-12 47.3 0.1 1 90 70 161 70 161 0.89 Toprim-like DUF3991 PF13154.6 76 AVFM02000085_00004 - 202 0.00012 22.3 0.1 1 1 1.2e-07 0.00032 21.0 0.1 36 72 21 57 12 62 0.88 Protein of unknown function (DUF3991) Sushi_2 PF09014.10 88 AVFM02000085_00004 - 202 0.056 13.3 0.6 1 2 4.5 1.2e+04 -3.7 0.1 16 26 57 67 53 73 0.69 Beta-2-glycoprotein-1 fifth domain Sushi_2 PF09014.10 88 AVFM02000085_00004 - 202 0.056 13.3 0.6 2 2 3.6e-05 0.091 12.7 0.1 31 80 104 156 95 162 0.80 Beta-2-glycoprotein-1 fifth domain Toprim_3 PF13362.6 95 AVFM02000085_00004 - 202 0.067 13.6 0.0 1 1 4.7e-05 0.12 12.8 0.0 1 89 68 161 68 164 0.77 Toprim domain Toprim_4 PF13662.6 89 AVFM02000085_00004 - 202 0.071 13.6 0.0 1 1 7.4e-05 0.19 12.2 0.0 2 76 68 140 67 150 0.76 Toprim domain Toprim PF01751.22 103 AVFM02000085_00004 - 202 0.09 13.0 1.2 1 2 5.8e-05 0.15 12.3 0.5 17 90 66 147 52 159 0.72 Toprim domain Toprim PF01751.22 103 AVFM02000085_00004 - 202 0.09 13.0 1.2 2 2 2 5.2e+03 -2.3 0.0 45 59 174 188 149 192 0.68 Toprim domain Osmo_CC PF08946.10 46 AVFM02000085_00004 - 202 0.26 11.6 0.1 1 2 0.58 1.5e+03 -0.5 0.5 19 26 61 68 58 72 0.83 Osmosensory transporter coiled coil Osmo_CC PF08946.10 46 AVFM02000085_00004 - 202 0.26 11.6 0.1 2 2 0.0001 0.26 11.6 0.1 21 41 175 195 174 199 0.93 Osmosensory transporter coiled coil Cys_rich_KTR PF14205.6 54 AVFM020000_00001 - 57 4.7e-32 109.6 5.1 1 1 7.9e-35 5.2e-32 109.4 5.1 2 54 5 57 4 57 0.99 Cysteine-rich KTR Prim_Zn_Ribbon PF08273.12 38 AVFM020000_00001 - 57 0.00057 20.1 1.3 1 2 3.4e-06 0.0023 18.2 0.0 6 19 9 22 7 25 0.86 Zinc-binding domain of primase-helicase Prim_Zn_Ribbon PF08273.12 38 AVFM020000_00001 - 57 0.00057 20.1 1.3 2 2 0.96 6.4e+02 0.8 0.4 2 9 29 36 28 40 0.72 Zinc-binding domain of primase-helicase zf-ISL3 PF14690.6 47 AVFM020000_00001 - 57 0.0029 18.2 0.6 1 2 0.0012 0.78 10.5 0.1 4 14 8 18 6 26 0.74 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ISL3 PF14690.6 47 AVFM020000_00001 - 57 0.0029 18.2 0.6 2 2 0.019 13 6.6 0.1 5 16 33 46 30 55 0.71 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.7 46 AVFM020000_00001 - 57 0.0033 17.4 1.7 1 2 0.0017 1.1 9.3 0.1 21 34 9 22 5 29 0.84 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 AVFM020000_00001 - 57 0.0033 17.4 1.7 2 2 0.0032 2.1 8.4 0.1 20 32 32 44 22 50 0.79 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 40 AVFM020000_00001 - 57 0.0038 17.3 1.4 1 2 0.0013 0.87 9.8 0.2 28 38 8 18 1 20 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 AVFM020000_00001 - 57 0.0038 17.3 1.4 2 2 0.0085 5.7 7.2 0.1 27 37 31 42 21 44 0.73 Zinc ribbon domain zf-TFIIB PF13453.6 41 AVFM020000_00001 - 57 0.0042 16.4 0.8 1 2 0.014 9.3 5.7 0.1 2 9 9 16 8 28 0.67 Transcription factor zinc-finger zf-TFIIB PF13453.6 41 AVFM020000_00001 - 57 0.0042 16.4 0.8 2 2 0.0008 0.53 9.7 0.1 1 12 32 44 32 51 0.71 Transcription factor zinc-finger DNA_ligase_ZBD PF03119.16 27 AVFM020000_00001 - 57 0.0048 16.9 1.8 1 2 7e-05 0.046 13.7 0.1 2 10 9 17 9 25 0.87 NAD-dependent DNA ligase C4 zinc finger domain DNA_ligase_ZBD PF03119.16 27 AVFM020000_00001 - 57 0.0048 16.9 1.8 2 2 0.24 1.6e+02 2.5 0.2 2 6 33 37 32 39 0.79 NAD-dependent DNA ligase C4 zinc finger domain NOB1_Zn_bind PF08772.11 72 AVFM020000_00001 - 57 0.0056 16.8 2.2 1 2 0.0065 4.3 7.6 0.3 25 38 8 21 2 29 0.84 Nin one binding (NOB1) Zn-ribbon like NOB1_Zn_bind PF08772.11 72 AVFM020000_00001 - 57 0.0056 16.8 2.2 2 2 0.0012 0.77 10.0 0.1 24 38 31 45 22 53 0.85 Nin one binding (NOB1) Zn-ribbon like Nudix_N_2 PF14803.6 34 AVFM020000_00001 - 57 0.01 15.8 1.1 1 3 3.4 2.3e+03 -1.4 0.0 27 31 3 7 2 8 0.82 Nudix N-terminal Nudix_N_2 PF14803.6 34 AVFM020000_00001 - 57 0.01 15.8 1.1 2 3 0.00076 0.51 10.3 0.0 3 16 9 22 8 27 0.89 Nudix N-terminal Nudix_N_2 PF14803.6 34 AVFM020000_00001 - 57 0.01 15.8 1.1 3 3 0.085 56 3.8 0.0 2 6 32 36 31 45 0.79 Nudix N-terminal Elf1 PF05129.13 78 AVFM020000_00001 - 57 0.013 15.6 0.2 1 1 2.6e-05 0.017 15.2 0.2 24 63 9 48 5 51 0.91 Transcription elongation factor Elf1 like zf-NADH-PPase PF09297.11 32 AVFM020000_00001 - 57 0.014 15.0 2.0 1 2 0.00047 0.31 10.7 0.1 6 14 9 17 8 21 0.87 NADH pyrophosphatase zinc ribbon domain zf-NADH-PPase PF09297.11 32 AVFM020000_00001 - 57 0.014 15.0 2.0 2 2 0.07 46 3.8 0.2 23 29 32 38 31 39 0.60 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 49 AVFM020000_00001 - 57 0.016 15.2 1.0 1 1 4.1e-05 0.027 14.5 1.0 12 37 6 39 2 47 0.81 Double zinc ribbon zf-DNL PF05180.12 64 AVFM020000_00001 - 57 0.017 15.1 0.6 1 1 5.3e-05 0.035 14.0 0.6 6 47 9 50 3 56 0.86 DNL zinc finger Zn_ribbon_SprT PF17283.2 38 AVFM020000_00001 - 57 0.024 14.6 2.5 1 1 6.2e-05 0.041 13.8 2.5 7 34 9 41 8 45 0.78 SprT-like zinc ribbon domain DpnI PF06044.12 182 AVFM020000_00001 - 57 0.033 13.8 0.4 1 1 6.3e-05 0.042 13.5 0.4 32 72 7 49 3 54 0.79 Dam-replacing family zf-C4_Topoisom PF01396.19 39 AVFM020000_00001 - 57 0.033 14.0 1.9 1 2 0.017 11 5.8 0.1 3 10 8 15 7 23 0.79 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 AVFM020000_00001 - 57 0.033 14.0 1.9 2 2 0.0059 3.9 7.3 0.1 3 13 32 43 31 46 0.79 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.6 23 AVFM020000_00001 - 57 0.042 13.6 3.5 1 2 0.0068 4.5 7.1 0.3 16 22 9 15 3 21 0.79 zinc-ribbon domain zinc_ribbon_2 PF13240.6 23 AVFM020000_00001 - 57 0.042 13.6 3.5 2 2 0.0053 3.5 7.5 0.3 15 20 32 37 27 40 0.75 zinc-ribbon domain zf-LITAF-like PF10601.9 70 AVFM020000_00001 - 57 0.046 14.0 2.6 1 2 0.027 18 5.7 0.2 5 22 6 23 3 29 0.79 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 AVFM020000_00001 - 57 0.046 14.0 2.6 2 2 0.002 1.3 9.3 0.2 4 18 29 43 26 53 0.79 LITAF-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 43 AVFM020000_00001 - 57 0.07 12.6 3.3 1 1 0.001 0.68 9.5 3.3 3 25 9 36 7 48 0.73 TFIIB zinc-binding HypA PF01155.19 112 AVFM020000_00001 - 57 0.079 13.0 0.7 1 1 0.00015 0.1 12.6 0.7 71 107 7 49 3 53 0.70 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Pox_E10 PF04805.12 70 AVFM020000_00001 - 57 0.12 12.2 1.0 1 2 0.0087 5.8 6.9 0.0 13 36 4 27 1 32 0.88 E10-like protein conserved region Pox_E10 PF04805.12 70 AVFM020000_00001 - 57 0.12 12.2 1.0 2 2 0.033 22 5.0 0.1 16 34 31 49 28 56 0.82 E10-like protein conserved region zf-trcl PF13451.6 48 AVFM020000_00001 - 57 0.13 12.2 3.1 1 1 0.0011 0.74 9.8 2.5 29 43 26 40 5 43 0.89 Probable zinc-ribbon domain zf-H2C2_2 PF13465.6 26 AVFM020000_00001 - 57 0.15 12.5 1.7 1 2 0.046 30 5.3 0.1 17 25 9 17 7 18 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 AVFM020000_00001 - 57 0.15 12.5 1.7 2 2 0.015 9.7 6.8 0.3 14 21 30 37 21 39 0.84 Zinc-finger double domain zf-Di19 PF05605.12 54 AVFM020000_00001 - 57 0.2 12.0 1.9 1 2 0.0028 1.9 8.9 0.1 32 44 7 19 2 28 0.65 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 AVFM020000_00001 - 57 0.2 12.0 1.9 2 2 0.21 1.4e+02 2.9 0.1 4 11 32 39 28 51 0.65 Drought induced 19 protein (Di19), zinc-binding zf_C2H2_10 PF18414.1 26 AVFM020000_00001 - 57 0.43 10.2 0.2 1 2 0.39 2.6e+02 1.3 0.2 5 10 9 14 7 16 0.83 C2H2 type zinc-finger zf_C2H2_10 PF18414.1 26 AVFM020000_00001 - 57 0.43 10.2 0.2 2 2 0.00065 0.43 10.2 0.2 5 22 33 51 30 53 0.82 C2H2 type zinc-finger DUF3797 PF12677.7 48 AVFM020000_00001 - 57 0.49 10.3 6.6 1 2 0.018 12 5.9 0.7 13 21 6 14 2 24 0.80 Domain of unknown function (DUF3797) DUF3797 PF12677.7 48 AVFM020000_00001 - 57 0.49 10.3 6.6 2 2 0.0042 2.8 7.9 1.2 13 28 30 48 18 57 0.62 Domain of unknown function (DUF3797) zf-ribbon_3 PF13248.6 26 AVFM020000_00001 - 57 0.64 9.5 5.6 1 2 0.0027 1.8 8.1 0.5 16 25 6 15 3 17 0.70 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 AVFM020000_00001 - 57 0.64 9.5 5.6 2 2 0.056 37 3.9 0.5 4 8 32 36 31 38 0.83 zinc-ribbon domain GTP_EFTU PF00009.27 194 AVFM020000_00002 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 AVFM020000_00002 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 AVFM020000_00002 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 AVFM020000_00002 - 639 1.2e-16 60.5 0.0 1 1 1.7e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 AVFM020000_00002 - 639 1.3e-12 47.6 0.1 1 1 1.6e-15 2.9e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 AVFM020000_00002 - 639 2e-06 27.9 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 AVFM020000_00002 - 639 0.0011 19.3 0.0 1 1 1.6e-06 0.0028 18.0 0.0 4 58 266 314 264 318 0.83 Elongation factor Tu domain 2 RF3_C PF16658.5 131 AVFM020000_00002 - 639 0.015 15.1 0.0 1 1 1.7e-05 0.031 14.1 0.0 42 82 377 417 344 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 AVFM020000_00002 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 AVFM020000_00002 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 AVFM020000_00002 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B TnpV PF14198.6 112 AVFM020000_00003 - 124 2.8e-43 146.4 0.5 1 1 1.8e-47 3.2e-43 146.2 0.5 1 112 12 122 12 122 0.98 Transposon-encoded protein TnpV VirB8 PF04335.13 214 AY190284_00001 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 AY190284_00001 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 AY190285_00001 - 295 2.8e-55 187.3 1.9 1 1 2.6e-59 4.6e-55 186.6 1.9 2 211 29 270 28 270 0.92 Conjugal transfer protein TrbI PF03743.14 187 AY190286_00001 - 138 5.8e-30 104.5 0.0 1 1 7.3e-34 6.6e-30 104.3 0.0 61 187 2 122 1 122 0.93 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 AY190286_00001 - 138 0.0049 16.0 0.1 1 1 6.9e-07 0.0062 15.7 0.1 31 81 69 119 50 124 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 AY190287_00001 - 332 6.4e-54 182.8 0.0 1 1 1.3e-56 7.4e-54 182.6 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 AY190287_00001 - 332 6.1e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 AY190287_00001 - 332 0.00016 21.1 0.0 1 1 4.3e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 AY190287_00001 - 332 0.00022 20.8 0.0 1 1 6.5e-07 0.00038 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 AY190287_00001 - 332 0.0014 18.9 0.0 1 1 4.4e-06 0.0026 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 AY190287_00001 - 332 0.0026 17.5 0.0 1 1 9.1e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 AY190287_00001 - 332 0.003 17.3 0.0 1 1 8.2e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 AY190287_00001 - 332 0.0037 17.3 0.0 1 1 1.3e-05 0.0073 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 AY190287_00001 - 332 0.0049 15.9 0.0 1 1 1.2e-05 0.0072 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 AY190287_00001 - 332 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 AY190287_00001 - 332 0.0087 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 AY190287_00001 - 332 0.0088 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 AY190287_00001 - 332 0.018 14.8 0.0 1 1 6.3e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 AY190287_00001 - 332 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 244 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 AY190287_00001 - 332 0.022 13.7 0.0 1 1 5.8e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 AY190287_00001 - 332 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 AY190287_00001 - 332 0.024 14.4 0.0 1 1 9.2e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 AY190287_00001 - 332 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 AY190287_00001 - 332 0.035 13.5 0.0 1 1 9.7e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 AY190287_00001 - 332 0.037 14.4 0.0 1 1 0.00018 0.11 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 AY190287_00001 - 332 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 AY190287_00001 - 332 0.039 13.2 0.0 1 1 0.00012 0.069 12.4 0.0 14 49 158 193 145 207 0.83 Zeta toxin PRK PF00485.18 197 AY190287_00001 - 332 0.052 13.3 0.0 1 1 0.00019 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 AY190287_00001 - 332 0.063 11.9 0.0 1 1 0.00015 0.086 11.4 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 AY190287_00001 - 332 0.065 13.6 0.0 1 1 0.00017 0.1 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 AY190287_00001 - 332 0.085 12.8 0.4 1 1 0.00039 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 AY190287_00001 - 332 0.089 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 AY190287_00001 - 332 0.11 12.4 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 AY190287_00001 - 332 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 AY190287_00001 - 332 0.2 11.4 0.0 1 1 0.00054 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 AY190287_00001 - 332 0.29 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 AY190287_00001 - 332 0.29 11.6 3.1 2 2 0.00055 0.32 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain Phage_pRha PF09669.10 88 AY190288_00001 - 230 1.8e-23 82.9 0.1 1 1 3e-27 5.3e-23 81.4 0.1 2 88 38 125 37 125 0.93 Phage regulatory protein Rha (Phage_pRha) GTP_EFTU PF00009.27 194 AY190525_00001 - 639 9e-59 198.3 0.3 1 1 6.3e-62 1.2e-58 197.8 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 AY190525_00001 - 639 2.6e-23 82.1 0.0 1 2 1.4 2.8e+03 -1.9 0.0 81 97 63 79 58 99 0.70 Elongation factor G, domain IV EFG_IV PF03764.18 121 AY190525_00001 - 639 2.6e-23 82.1 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 AY190525_00001 - 639 1.1e-16 60.6 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 AY190525_00001 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 2.9e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 AY190525_00001 - 639 1e-06 28.8 0.1 1 1 1.2e-09 2.4e-06 27.6 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 AY190525_00001 - 639 0.0012 19.2 0.0 1 1 1.4e-06 0.0028 18.0 0.0 4 58 266 314 264 318 0.83 Elongation factor Tu domain 2 RF3_C PF16658.5 131 AY190525_00001 - 639 0.015 15.1 0.0 1 1 1.6e-05 0.031 14.1 0.0 42 82 377 417 344 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 AY190525_00001 - 639 0.021 14.1 0.1 1 1 2e-05 0.039 13.2 0.1 9 76 8 82 3 90 0.72 Septin AIG1 PF04548.16 212 AY190525_00001 - 639 0.043 13.1 0.0 1 1 5.4e-05 0.11 11.8 0.0 32 62 51 81 43 109 0.83 AIG1 family GTP_EFTU PF00009.27 194 AY394560_00001 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 AY394560_00001 - 639 3.7e-23 81.6 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 AY394560_00001 - 639 3.7e-23 81.6 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 AY394560_00001 - 639 1.2e-16 60.5 0.0 1 1 1.7e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 AY394560_00001 - 639 1.3e-13 50.8 0.1 1 1 1.6e-16 2.8e-13 49.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 AY394560_00001 - 639 1.3e-06 28.5 0.2 1 2 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 AY394560_00001 - 639 1.3e-06 28.5 0.2 2 2 4.9 8.8e+03 -3.2 0.0 67 87 261 286 255 313 0.59 50S ribosome-binding GTPase RF3_C PF16658.5 131 AY394560_00001 - 639 0.0027 17.5 0.0 1 1 3.4e-06 0.0061 16.4 0.0 14 82 349 417 341 434 0.79 Class II release factor RF3, C-terminal domain GTP_EFTU_D2 PF03144.25 74 AY394560_00001 - 639 0.012 16.0 0.0 1 1 1.4e-05 0.024 15.0 0.0 2 58 264 314 263 319 0.88 Elongation factor Tu domain 2 Septin PF00735.18 281 AY394560_00001 - 639 0.02 14.2 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 AY394560_00001 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 AY394560_00001 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 AY394560_00002 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 AY394560_00002 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 AY394560_00004 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 AY394560_00004 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 AY394560_00004 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain CtsR_C PF17727.1 72 AY394560_00005 - 102 0.019 15.1 0.2 1 2 0.00017 3 8.0 0.0 3 38 31 66 27 73 0.86 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 AY394560_00005 - 102 0.019 15.1 0.2 2 2 0.0014 24 5.1 0.0 28 49 74 95 71 101 0.84 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 AY394560_00006 - 117 0.0057 16.0 1.4 1 3 6.3e-07 0.0057 16.0 1.4 18 43 3 28 1 30 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 AY394560_00006 - 117 0.0057 16.0 1.4 2 3 1 9e+03 -3.8 0.3 16 22 52 58 51 61 0.49 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 AY394560_00006 - 117 0.0057 16.0 1.4 3 3 0.77 6.9e+03 -3.4 0.9 17 29 76 88 74 92 0.65 Putative Flagellin, Flp1-like, domain vMSA PF00695.19 400 AY394560_00006 - 117 1.9 7.5 5.4 1 1 0.00025 2.3 7.2 5.4 328 398 9 85 1 87 0.72 Major surface antigen from hepadnavirus LysE PF01810.18 193 AY394560_00007 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 AY394560_00007 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 AY394560_00007 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 AY394560_00007 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 AY394560_00007 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 AY394560_00007 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 AY394560_00007 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 AY394560_00007 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 AY394560_00007 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 AY394560_00008 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 AY394560_00008 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 AY394560_00008 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 AY394560_00008 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 AY394560_00008 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 AY394560_00008 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 AY394560_00009 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 AY394560_00009 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 AY394560_00010 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 AY394560_00010 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 AY394560_00010 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 AY394560_00010 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 AY394560_00010 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 AY394560_00010 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 AY394560_00011 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 AY394560_00012 - 1932 3.1e-16 59.1 2.7 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 AY394560_00012 - 1932 3.1e-16 59.1 2.7 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 AY394560_00012 - 1932 3.1e-16 59.1 2.7 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1876 1924 1846 1925 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 AY394560_00012 - 1932 4.9e-08 33.2 8.3 1 2 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 AY394560_00012 - 1932 4.9e-08 33.2 8.3 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1799 1910 1725 1932 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 AY394560_00012 - 1932 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 AY394560_00012 - 1932 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 AY394560_00012 - 1932 9.2e-06 25.5 1.8 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 AY394560_00012 - 1932 9.2e-06 25.5 1.8 2 2 0.12 4.2e+02 0.6 0.0 119 150 1883 1916 1828 1931 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 AY394560_00012 - 1932 3.7e-05 24.2 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 AY394560_00012 - 1932 3.7e-05 24.2 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 664 701 655 716 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 AY394560_00013 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 AY394560_00013 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 AY394560_00013 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 AY394560_00013 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) Acetyltransf_7 PF13508.7 76 AY394560_00014 - 246 0.00022 21.6 0.0 1 1 7.1e-08 0.00042 20.7 0.0 29 75 79 143 37 144 0.67 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 AY394560_00014 - 246 0.0032 17.7 0.0 1 1 1.3e-06 0.0079 16.4 0.0 64 92 81 109 56 142 0.78 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 AY394560_00014 - 246 0.0091 16.0 0.3 1 1 2.8e-06 0.017 15.2 0.3 24 67 171 214 154 218 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Relaxase PF03432.14 242 AY394560_00015 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 AY394560_00015 - 462 4.7e-10 39.5 7.4 2 2 0.0071 1.3e+02 2.0 5.4 119 183 326 395 318 430 0.69 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 AY394560_00016 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 AY394560_00016 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 AY394560_00016 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 AY394560_00016 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 AY394560_00016 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 AY394560_00016 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 AY394560_00016 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 AY394560_00016 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 AY394560_00016 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 AY394560_00016 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 AY394560_00016 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 AY394560_00017 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 AY394560_00017 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 AY394560_00017 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 AY394560_00017 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 AY394560_00017 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 AY394560_00019 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 AY394560_00019 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 AY394560_00019 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 AY394560_00019 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 AY394560_00019 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 AY394560_00020 - 92 0.0072 16.3 0.0 1 1 7.4e-07 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) Sdh_cyt PF01127.22 121 AY394560_00021 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 AY394560_00021 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 AY394560_00021 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 AY394560_00023 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 AY394560_00024 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 AY394560_00025 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 AY394560_00025 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 AY394560_00025 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 AY394560_00025 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 AY394560_00025 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 AY394560_00025 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 AY394560_00025 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 AY394560_00025 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 AY394560_00025 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 AY394560_00025 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 AY394560_00025 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 AY394560_00025 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 AY394560_00025 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 AY394560_00026 - 204 2.5e-34 118.5 0.6 1 1 7.4e-38 3.3e-34 118.1 0.6 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 AY394560_00026 - 204 0.025 14.3 0.6 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 AY394560_00026 - 204 0.025 14.3 0.6 2 3 0.0021 9.6 6.1 0.0 2 36 117 152 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 AY394560_00026 - 204 0.025 14.3 0.6 3 3 0.0036 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 AY394560_00026 - 204 0.05 13.6 4.8 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 AY394560_00026 - 204 0.05 13.6 4.8 2 3 1.5 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 AY394560_00026 - 204 0.05 13.6 4.8 3 3 0.024 1.1e+02 3.0 0.1 39 55 159 175 153 177 0.91 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 AY394560_00026 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 AY394560_00026 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 AY394560_00026 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 AY394560_00027 - 135 0.00056 20.0 0.0 1 2 7.8e-08 0.0014 18.8 0.0 4 53 7 71 4 93 0.79 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 AY394560_00027 - 135 0.00056 20.0 0.0 2 2 0.0096 1.7e+02 2.5 0.0 12 35 55 77 53 106 0.80 CRISPR associated protein Cas2 TrbC PF04956.13 99 AY394560_00029 - 87 6.2e-13 48.8 6.8 1 1 7.4e-17 6.6e-13 48.7 6.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 AY394560_00029 - 87 0.61 9.9 6.3 1 1 0.00015 1.3 8.9 6.2 108 135 60 87 10 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 AY394560_00030 - 922 7.1e-51 173.2 0.4 1 1 2.7e-54 1.6e-50 172.1 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 AY394560_00030 - 922 2.6e-21 75.7 1.0 1 1 7.4e-25 4.4e-21 74.9 1.0 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 AY394560_00030 - 922 0.046 13.2 0.1 1 1 1.6e-05 0.097 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 AY394560_00031 - 188 1.8e-31 108.5 0.0 1 1 3.2e-35 2.9e-31 107.9 0.0 2 88 24 122 23 122 0.89 Phage regulatory protein Rha (Phage_pRha) Y_Y_Y PF07495.13 66 AY394560_00031 - 188 0.1 12.6 0.3 1 1 2e-05 0.18 11.8 0.3 19 63 126 174 122 177 0.80 Y_Y_Y domain PBECR2 PF18810.1 119 AY394560_00032 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 SSB PF00436.25 104 AY394560_00033 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 AY394560_00034 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 AY394560_00034 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 AY394560_00034 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 AY394560_00034 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 AY394560_00034 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 AY394560_00034 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 AY394560_00034 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 AY394560_00035 - 328 1e-28 101.1 13.2 1 1 5.6e-32 1.4e-28 100.6 13.2 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 AY394560_00035 - 328 0.0082 16.3 2.4 1 3 0.45 1.1e+03 -0.2 0.0 30 54 134 158 116 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 AY394560_00035 - 328 0.0082 16.3 2.4 2 3 8.2e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 AY394560_00035 - 328 0.0082 16.3 2.4 3 3 2.2 5.7e+03 -2.5 0.0 60 83 300 323 291 327 0.69 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 AY394560_00035 - 328 0.016 15.9 0.9 1 2 1.8 4.5e+03 -1.7 0.0 54 69 123 138 98 163 0.56 von Willebrand factor type A domain VWA_2 PF13519.6 107 AY394560_00035 - 328 0.016 15.9 0.9 2 2 1.4e-05 0.036 14.7 0.2 31 84 208 270 197 309 0.85 von Willebrand factor type A domain KMP11 PF03037.16 90 AY394560_00035 - 328 0.02 15.7 0.1 1 2 6.6e-05 0.17 12.7 0.0 8 56 91 139 88 174 0.82 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 AY394560_00035 - 328 0.02 15.7 0.1 2 2 4.4 1.1e+04 -2.7 0.0 9 21 235 247 228 267 0.50 Kinetoplastid membrane protein 11 AATF-Che1 PF13339.6 139 AY394560_00035 - 328 0.023 15.3 12.3 1 2 0.024 62 4.3 0.7 48 135 107 145 42 185 0.60 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 AY394560_00035 - 328 0.023 15.3 12.3 2 2 1.1e-05 0.028 15.1 5.0 49 125 225 315 205 322 0.71 Apoptosis antagonizing transcription factor Tissue_fac PF01108.17 107 AY394560_00035 - 328 0.029 14.2 0.1 1 1 2.4e-05 0.062 13.2 0.1 4 64 80 148 76 182 0.68 Tissue factor Allexi_40kDa PF05549.11 271 AY394560_00035 - 328 1.2 8.6 6.3 1 2 0.045 1.1e+02 2.1 0.1 36 125 46 140 30 172 0.72 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 AY394560_00035 - 328 1.2 8.6 6.3 2 2 0.00047 1.2 8.6 2.0 61 145 212 293 191 320 0.59 Allexivirus 40kDa protein TrbL PF04610.14 215 AY394560_00036 - 330 1.4e-29 103.5 34.4 1 2 1.5e-33 1.4e-29 103.5 34.4 1 214 38 250 38 251 0.92 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 AY394560_00036 - 330 1.4e-29 103.5 34.4 2 2 0.055 4.9e+02 0.3 0.4 35 86 245 293 241 324 0.56 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 AY394560_00036 - 330 0.097 12.5 1.3 1 2 0.27 2.4e+03 -1.6 0.1 39 51 69 81 60 113 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 AY394560_00036 - 330 0.097 12.5 1.3 2 2 2.4e-05 0.21 11.4 0.1 27 81 230 286 198 298 0.74 T-cell leukemia translocation-altered Trep_dent_lipo PF09710.10 397 AY394560_00037 - 54 0.034 13.1 1.0 1 1 5.2e-06 0.031 13.2 1.0 3 25 3 24 1 53 0.80 Treponema clustered lipoprotein (Trep_dent_lipo) La_HTH_kDCL PF18177.1 90 AY394560_00037 - 54 0.19 12.0 0.0 1 1 3.6e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain PsbT PF01405.17 29 AY394560_00037 - 54 1.1 9.1 5.2 1 1 0.00027 1.6 8.6 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 AY394560_00038 - 219 1.6e-52 178.5 0.5 1 1 1.9e-56 1.7e-52 178.4 0.5 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 AY394560_00038 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 AY394560_00039 - 296 4.2e-56 190.0 1.7 1 1 1.1e-59 6.7e-56 189.3 1.7 2 211 31 271 30 271 0.92 Conjugal transfer protein TraE PF05309.11 182 AY394560_00039 - 296 0.022 14.2 0.1 1 1 6.6e-06 0.039 13.3 0.1 107 171 89 154 86 161 0.83 TraE protein Rho_RNA_bind PF07497.12 73 AY394560_00039 - 296 0.068 13.0 0.0 1 2 1.5 9.2e+03 -3.4 0.0 9 22 79 92 76 97 0.79 Rho termination factor, RNA-binding domain Rho_RNA_bind PF07497.12 73 AY394560_00039 - 296 0.068 13.0 0.0 2 2 3.3e-05 0.2 11.6 0.0 21 49 241 269 232 288 0.84 Rho termination factor, RNA-binding domain TrbI PF03743.14 187 AY394560_00040 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.4e+03 -3.4 0.3 136 154 140 166 120 172 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 AY394560_00040 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 AY394560_00040 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease T2SSE PF00437.20 273 AY394560_00041 - 335 1.5e-54 184.9 0.0 1 1 3.1e-57 1.7e-54 184.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 AY394560_00041 - 335 7e-05 23.4 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 AY394560_00041 - 335 0.00011 21.6 0.0 1 1 3.1e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 AY394560_00041 - 335 0.00029 20.4 0.0 1 1 9.1e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 AY394560_00041 - 335 0.0014 18.9 0.0 1 1 4.6e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 AY394560_00041 - 335 0.0014 18.4 0.0 1 1 4e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 AY394560_00041 - 335 0.0025 17.6 0.0 1 1 9.5e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 AY394560_00041 - 335 0.0035 17.3 0.0 1 1 1.3e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 AY394560_00041 - 335 0.0055 15.7 0.0 1 1 1.4e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 AY394560_00041 - 335 0.0073 16.2 0.0 1 1 2.2e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 AY394560_00041 - 335 0.0087 15.4 0.0 1 1 2.5e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 AY394560_00041 - 335 0.0092 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 AY394560_00041 - 335 0.019 15.1 0.0 1 1 6.3e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 AY394560_00041 - 335 0.021 13.8 0.0 1 1 6.1e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 AY394560_00041 - 335 0.022 14.8 0.1 1 1 9.7e-05 0.054 13.5 0.0 5 50 147 186 135 244 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 AY394560_00041 - 335 0.024 14.4 0.0 1 1 9e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 AY394560_00041 - 335 0.026 14.2 0.0 1 1 9.6e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 AY394560_00041 - 335 0.037 13.5 0.0 1 1 0.00011 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 AY394560_00041 - 335 0.039 14.0 0.1 1 1 0.00019 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 AY394560_00041 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 AY394560_00041 - 335 0.046 13.0 0.0 1 1 0.00014 0.08 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin RNA_helicase PF00910.22 107 AY394560_00041 - 335 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase PRK PF00485.18 197 AY394560_00041 - 335 0.056 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 AY394560_00041 - 335 0.066 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 AY394560_00041 - 335 0.074 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 AY394560_00041 - 335 0.088 12.7 0.0 1 1 0.00035 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 AY394560_00041 - 335 0.097 12.6 0.5 1 1 0.00043 0.24 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 AY394560_00041 - 335 0.11 12.4 0.1 1 1 0.00041 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 AY394560_00041 - 335 0.13 12.8 0.1 1 1 0.00069 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 AY394560_00041 - 335 0.15 11.7 0.0 1 1 0.00042 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 AY394560_00041 - 335 0.15 11.8 0.0 1 1 0.00043 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 AY394560_00041 - 335 0.35 11.3 3.8 1 2 2.6 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 AY394560_00041 - 335 0.35 11.3 3.8 2 2 0.00066 0.37 11.3 1.3 22 37 163 178 160 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 AY394560_00042 - 603 1.4e-105 353.8 0.1 1 1 3.2e-109 1.9e-105 353.4 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 AY394560_00042 - 603 1.1e-24 86.8 0.0 1 1 3.5e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 AY394560_00042 - 603 6.2e-16 58.3 0.0 1 2 1.2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 AY394560_00042 - 603 6.2e-16 58.3 0.0 2 2 1.9e-14 1.1e-10 41.0 0.0 187 370 347 532 308 543 0.80 Type IV secretion-system coupling protein DNA-binding domain Cag12 PF13117.6 97 AY394560_00043 - 143 1e-16 61.2 0.1 1 1 1.5e-20 1.3e-16 60.8 0.1 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 AY394560_00043 - 143 0.062 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 AY394560_00044 - 252 9.5e-39 132.8 1.2 1 1 6.7e-43 1.2e-38 132.5 1.2 1 154 25 190 25 192 0.91 TrbM PRELI PF04707.14 157 AY394560_00045 - 266 0.028 14.2 2.2 1 2 0.49 1.8e+03 -1.4 0.1 122 129 35 42 4 73 0.51 PRELI-like family PRELI PF04707.14 157 AY394560_00045 - 266 0.028 14.2 2.2 2 2 9.1e-06 0.033 14.0 0.3 96 155 84 148 79 150 0.87 PRELI-like family Prismane PF03063.20 511 AY394560_00045 - 266 0.14 10.8 0.0 1 1 5.3e-05 0.19 10.4 0.0 75 191 94 216 78 231 0.73 Prismane/CO dehydrogenase family TACC_C PF05010.14 201 AY394560_00045 - 266 2.3 8.0 10.0 1 1 0.00099 3.6 7.3 7.9 13 125 2 113 1 138 0.78 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Mod_r PF07200.13 146 AY394560_00045 - 266 4.6 7.4 12.1 1 2 0.014 50 4.0 9.2 10 135 15 161 2 165 0.63 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 AY394560_00045 - 266 4.6 7.4 12.1 2 2 0.47 1.7e+03 -1.0 0.0 65 88 207 230 204 259 0.71 Modifier of rudimentary (Mod(r)) protein IFT20 PF14931.6 119 AY394560_00045 - 266 5.4 7.2 10.4 1 3 0.15 5.2e+02 0.8 0.3 25 46 24 45 1 56 0.50 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 AY394560_00045 - 266 5.4 7.2 10.4 2 3 0.00037 1.3 9.2 0.8 25 54 90 119 82 127 0.89 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 AY394560_00045 - 266 5.4 7.2 10.4 3 3 0.042 1.5e+02 2.5 0.2 23 43 121 141 116 165 0.75 Intraflagellar transport complex B, subunit 20 CdhD PF03599.16 386 AY394560_00047 - 206 0.0071 15.1 0.0 1 1 1.9e-06 0.012 14.4 0.0 283 358 11 87 2 96 0.87 CO dehydrogenase/acetyl-CoA synthase delta subunit Redoxin PF08534.10 147 AY394560_00047 - 206 0.028 14.1 0.9 1 2 0.082 4.9e+02 0.4 0.1 119 146 11 36 4 37 0.82 Redoxin Redoxin PF08534.10 147 AY394560_00047 - 206 0.028 14.1 0.9 2 2 3e-05 0.18 11.5 0.1 49 76 144 173 138 191 0.79 Redoxin YnfE PF17452.2 78 AY394560_00047 - 206 0.12 12.6 0.1 1 3 2.1e-05 0.12 12.6 0.1 11 33 10 32 5 47 0.88 Uncharacterized YnfE-like YnfE PF17452.2 78 AY394560_00047 - 206 0.12 12.6 0.1 2 3 0.31 1.8e+03 -0.7 0.3 36 50 143 157 136 185 0.64 Uncharacterized YnfE-like YnfE PF17452.2 78 AY394560_00047 - 206 0.12 12.6 0.1 3 3 0.84 5e+03 -2.1 1.5 26 38 184 195 170 205 0.48 Uncharacterized YnfE-like Topoisom_bac PF01131.20 413 AY394560_00048 - 730 2.7e-97 326.4 7.4 1 1 3.6e-100 3.8e-97 325.9 7.4 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 AY394560_00048 - 730 7.1e-12 45.5 2.2 1 2 1.3e-14 1.4e-11 44.5 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 AY394560_00048 - 730 7.1e-12 45.5 2.2 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 AY394560_00048 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 AY394560_00048 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 AY394560_00048 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 AY394560_00048 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 AY394560_00048 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 AY394560_00048 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 AY394560_00048 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 AY394560_00048 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 AY394560_00048 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 AY394560_00048 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 AY394560_00048 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 AY394560_00048 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 AY394560_00048 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 AY394560_00048 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 AY394560_00048 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 AY394560_00048 - 730 0.096 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 AY394560_00048 - 730 0.096 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain EF-hand_8 PF13833.6 55 AY394560_00048 - 730 0.1 12.5 0.0 1 1 0.00031 0.33 10.8 0.0 26 53 94 121 89 123 0.90 EF-hand domain pair HTH_34 PF13601.6 80 AY394560_00048 - 730 0.44 10.8 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 AY394560_00048 - 730 0.44 10.8 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 AY394560_00048 - 730 0.44 10.8 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 AY394560_00048 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 AY394560_00048 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 AY394560_00048 - 730 0.63 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 AY394560_00048 - 730 0.63 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 AY394560_00048 - 730 0.74 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 AY394560_00048 - 730 0.74 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 AY394560_00048 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 AY394560_00048 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 AY394560_00048 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 AY394560_00048 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 AY394560_00049 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 AY394560_00049 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 AY394561_00001 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 AY394561_00001 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 AY394561_00001 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 AY394561_00001 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 AY394561_00001 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 AY394561_00001 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 AY394561_00001 - 639 0.00029 21.1 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 AY394561_00001 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 AY394561_00001 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 AY394561_00001 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 AY394561_00001 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 AY394561_00002 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 AY394561_00002 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 AY394561_00004 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 AY394561_00004 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 AY394561_00004 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 AY394561_00005 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 AY394561_00005 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 AY394561_00005 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 AY394561_00005 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 AY394561_00006 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 AY394561_00006 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 AY394561_00007 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 AY394561_00007 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 AY394561_00007 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 AY394561_00007 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 AY394561_00007 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 AY394561_00007 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 AY394561_00007 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 AY394561_00007 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 AY394561_00007 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 AY394561_00008 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 AY394561_00008 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 AY394561_00008 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 AY394561_00008 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 AY394561_00008 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 AY394561_00008 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 AY394561_00009 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 AY394561_00009 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 AY394561_00010 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 AY394561_00010 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 AY394561_00010 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 AY394561_00010 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 AY394561_00010 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 AY394561_00010 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 AY394561_00011 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 AY394561_00012 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 AY394561_00012 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 AY394561_00012 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 AY394561_00012 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 AY394561_00012 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 AY394561_00012 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 AY394561_00012 - 1932 9.9e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 AY394561_00012 - 1932 9.9e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 AY394561_00012 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 AY394561_00012 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 AY394561_00012 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 AY394561_00012 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 AY394561_00013 - 234 0.0008 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 AY394561_00013 - 234 0.033 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 AY394561_00014 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 AY394561_00014 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 AY394561_00015 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 AY394561_00015 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 AY394561_00015 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 AY394561_00015 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 AY394561_00015 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 AY394561_00015 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 AY394561_00015 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 AY394561_00015 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 AY394561_00015 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 AY394561_00015 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 AY394561_00015 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 AY394561_00016 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 AY394561_00016 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 AY394561_00016 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 AY394561_00016 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 AY394561_00016 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 AY394561_00018 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 AY394561_00018 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 AY394561_00019 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 AY394561_00019 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 AY394561_00019 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 AY394561_00019 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 AY394561_00019 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 AY394561_00020 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 AY394561_00020 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) UBA_6 PF18039.1 42 AY394561_00021 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 AY394561_00021 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 AY394561_00021 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 AY394561_00021 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 AY394561_00022 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 AY394561_00022 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 AY394561_00022 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 AY394561_00024 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 AY394561_00025 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 AY394561_00026 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 AY394561_00026 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 AY394561_00026 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 AY394561_00026 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 AY394561_00026 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 AY394561_00026 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 AY394561_00026 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 AY394561_00026 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 AY394561_00026 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 AY394561_00026 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 AY394561_00026 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 AY394561_00026 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 AY394561_00027 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 AY394561_00027 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 AY394561_00027 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 AY394561_00027 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 AY394561_00027 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 AY394561_00027 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 AY394561_00027 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 AY394561_00027 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 AY394561_00027 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 AY394561_00027 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 AY394561_00028 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 AY394561_00028 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 AY394561_00028 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 AY394561_00030 - 87 3.5e-13 49.6 6.7 1 1 4.5e-17 4e-13 49.4 6.7 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 AY394561_00030 - 87 0.17 11.8 4.4 1 1 2.6e-05 0.23 11.3 4.4 78 135 37 87 9 87 0.70 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 AY394561_00031 - 883 4.8e-50 170.5 0.5 1 1 1.8e-53 1.1e-49 169.4 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 AY394561_00031 - 883 6.8e-21 74.3 1.2 1 1 2e-24 1.2e-20 73.5 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 AY394561_00031 - 883 0.045 13.2 0.1 1 1 1.5e-05 0.092 12.2 0.1 53 153 624 844 622 851 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 AY394561_00033 - 162 1.5e-21 76.7 0.1 1 1 1.5e-25 2.6e-21 76.0 0.1 16 88 12 96 5 96 0.79 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 AY394561_00034 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 AY394561_00034 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 AY394561_00034 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 AY394561_00034 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 AY394561_00034 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 AY394561_00034 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 AY394561_00034 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 AY394561_00034 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 AY394561_00034 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 AY394561_00034 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 AY394561_00034 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 AY394561_00034 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 AY394561_00034 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 AY394561_00034 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 AY394561_00035 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 AY394561_00036 - 91 0.00046 19.9 6.9 1 2 5.3e-08 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 AY394561_00036 - 91 0.00046 19.9 6.9 2 2 0.014 1.3e+02 2.5 0.2 31 52 57 78 56 80 0.82 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 AY394561_00036 - 91 0.0053 17.3 1.0 1 1 6.9e-07 0.0062 17.1 1.0 21 87 9 81 1 85 0.90 FliG N-terminal domain T4SS PF07996.11 197 AY394561_00037 - 323 7.9e-29 101.5 13.4 1 1 4e-32 1e-28 101.1 13.4 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 AY394561_00037 - 323 0.0081 16.3 0.6 1 2 0.99 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 AY394561_00037 - 323 0.0081 16.3 0.6 2 2 1.2e-05 0.03 14.5 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 AY394561_00037 - 323 0.014 16.1 5.0 1 2 0.046 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 AY394561_00037 - 323 0.014 16.1 5.0 2 2 5.3e-06 0.014 16.1 5.0 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 AY394561_00037 - 323 0.043 14.5 0.8 1 2 2.2 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 AY394561_00037 - 323 0.043 14.5 0.8 2 2 1.7e-05 0.043 14.5 0.8 32 84 209 270 202 296 0.83 von Willebrand factor type A domain KNOX2 PF03791.13 48 AY394561_00037 - 323 0.07 12.6 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 AY394561_00037 - 323 0.07 12.6 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain THOC7 PF05615.13 132 AY394561_00037 - 323 1.2 9.4 11.3 1 2 0.00061 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 AY394561_00037 - 323 1.2 9.4 11.3 2 2 0.17 4.4e+02 1.1 6.3 16 71 231 294 202 315 0.50 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 AY394561_00037 - 323 3.5 7.1 7.2 1 2 0.19 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 AY394561_00037 - 323 3.5 7.1 7.2 2 2 0.00046 1.2 8.6 3.3 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein TrbL PF04610.14 215 AY394561_00038 - 281 1.4e-31 110.0 32.1 1 1 1e-35 1.9e-31 109.5 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein Trep_dent_lipo PF09710.10 397 AY394561_00039 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 AY394561_00039 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 AY394561_00040 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 AY394561_00040 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 AY394561_00041 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 AY394561_00041 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 AY394561_00041 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 AY394561_00042 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 AY394561_00042 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 AY394561_00043 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 AY394561_00043 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 AY394561_00043 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 AY394561_00043 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 AY394561_00043 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 AY394561_00043 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 AY394561_00043 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 AY394561_00043 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 AY394561_00043 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 AY394561_00043 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 AY394561_00043 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 AY394561_00043 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 AY394561_00043 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 AY394561_00043 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 AY394561_00043 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 AY394561_00043 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 AY394561_00043 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 AY394561_00043 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 AY394561_00043 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 AY394561_00043 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 AY394561_00043 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 AY394561_00043 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 AY394561_00043 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 AY394561_00043 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 AY394561_00043 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 AY394561_00043 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 AY394561_00043 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 AY394561_00043 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 AY394561_00043 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 AY394561_00043 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 AY394561_00043 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 AY394561_00043 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 AY394561_00044 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 AY394561_00044 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 AY394561_00044 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 AY394561_00044 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 AY394561_00044 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 AY394561_00045 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 AY394561_00045 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 AY394561_00045 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 AY394561_00045 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 AY394561_00045 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 AY394561_00046 - 143 5.7e-29 101.1 0.5 1 1 3.6e-33 6.4e-29 100.9 0.5 1 90 24 115 24 139 0.90 TrbM PRELI PF04707.14 157 AY394561_00047 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 AY394561_00047 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 AY394561_00047 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 AY394561_00047 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 AY394561_00047 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 AY394561_00047 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 AY394561_00049 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 AY394561_00049 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 AY394561_00050 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 AY394561_00050 - 730 5.6e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 AY394561_00050 - 730 5.6e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 AY394561_00050 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 AY394561_00050 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 AY394561_00050 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 AY394561_00050 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 AY394561_00050 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 AY394561_00050 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 AY394561_00050 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 AY394561_00050 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 AY394561_00050 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 AY394561_00050 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 AY394561_00050 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 AY394561_00050 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 AY394561_00050 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 AY394561_00050 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 AY394561_00050 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 AY394561_00050 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 AY394561_00050 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 AY394561_00050 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 AY394561_00050 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 AY394561_00050 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 AY394561_00050 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 AY394561_00050 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 AY394561_00050 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 AY394561_00050 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 AY394561_00050 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 AY394561_00050 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 AY394561_00050 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 AY394561_00050 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 AY394561_00050 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 AY394561_00050 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 AY394561_00050 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 AY394561_00051 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 AY394561_00051 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain Adenyl_transf PF04439.12 279 AY701528_00002 - 288 1.2e-115 385.5 6.3 1 1 7.3e-120 1.3e-115 385.3 6.3 1 276 1 274 1 277 0.99 Streptomycin adenylyltransferase PcfJ PF14284.6 144 AY701528_00003 - 233 2.9e-05 24.0 2.2 1 2 0.42 3.8e+03 -2.3 0.0 56 65 49 58 14 83 0.63 PcfJ-like protein PcfJ PF14284.6 144 AY701528_00003 - 233 2.9e-05 24.0 2.2 2 2 3.2e-09 2.9e-05 24.0 2.2 3 133 90 216 88 226 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 AY701528_00003 - 233 0.0053 16.7 3.0 1 1 1.6e-06 0.015 15.3 3.0 37 126 71 205 10 215 0.75 Intein splicing domain GTP_EFTU PF00009.27 194 AY701528_00005 - 639 8.9e-59 198.3 0.3 1 1 6.3e-62 1.2e-58 197.8 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 AY701528_00005 - 639 2.6e-23 82.1 0.0 1 2 1.4 2.8e+03 -1.9 0.0 81 97 63 79 58 99 0.70 Elongation factor G, domain IV EFG_IV PF03764.18 121 AY701528_00005 - 639 2.6e-23 82.1 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 AY701528_00005 - 639 8.5e-17 61.0 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 AY701528_00005 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 AY701528_00005 - 639 9.7e-07 28.9 0.1 1 1 1.2e-09 2.4e-06 27.6 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 AY701528_00005 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 AY701528_00005 - 639 0.018 14.9 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 AY701528_00005 - 639 0.021 14.1 0.1 1 1 2e-05 0.039 13.2 0.1 9 76 8 82 3 90 0.72 Septin AIG1 PF04548.16 212 AY701528_00005 - 639 0.043 13.1 0.0 1 1 5.4e-05 0.11 11.8 0.0 32 62 51 81 43 109 0.83 AIG1 family DUF4111 PF13427.6 103 AY701528_00007 - 258 2.6e-26 91.8 0.0 1 3 0.88 3.2e+03 -1.6 0.0 60 80 3 23 2 25 0.81 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 AY701528_00007 - 258 2.6e-26 91.8 0.0 2 3 2.3 8.4e+03 -3.0 0.0 8 22 52 66 50 72 0.73 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 AY701528_00007 - 258 2.6e-26 91.8 0.0 3 3 3.2e-29 1.1e-25 89.7 0.0 1 103 148 250 148 250 0.98 Domain of unknown function (DUF4111) Polbeta PF18765.1 93 AY701528_00007 - 258 1.1e-09 38.2 0.0 1 2 1.5e-12 5.4e-09 36.0 0.0 8 74 22 92 11 97 0.77 Polymerase beta, Nucleotidyltransferase Polbeta PF18765.1 93 AY701528_00007 - 258 1.1e-09 38.2 0.0 2 2 0.56 2e+03 -1.1 0.0 17 42 103 134 98 151 0.71 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 95 AY701528_00007 - 258 3e-06 27.4 0.0 1 1 1.8e-09 6.5e-06 26.4 0.0 14 75 25 88 11 105 0.75 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 199 AY701528_00007 - 258 0.00019 21.4 0.0 1 1 8.4e-08 0.0003 20.7 0.0 88 138 21 71 3 83 0.86 Adenylate cyclase NT domain MdcG PF10620.9 199 AY701528_00007 - 258 0.2 11.4 0.1 1 2 0.00019 0.67 9.7 0.0 123 154 36 67 3 74 0.76 Phosphoribosyl-dephospho-CoA transferase MdcG MdcG PF10620.9 199 AY701528_00007 - 258 0.2 11.4 0.1 2 2 0.44 1.6e+03 -1.3 0.1 166 189 234 257 217 258 0.80 Phosphoribosyl-dephospho-CoA transferase MdcG AAA_18 PF13238.6 130 AY701528_00008 - 181 4.8e-14 53.0 0.0 1 1 1.4e-16 6.3e-14 52.6 0.0 1 122 7 133 7 141 0.86 AAA domain AAA_33 PF13671.6 143 AY701528_00008 - 181 2.4e-10 40.8 0.0 1 1 6.7e-13 2.9e-10 40.4 0.0 2 136 7 144 6 147 0.81 AAA domain CPT PF07931.12 174 AY701528_00008 - 181 7.5e-10 38.9 0.0 1 1 3.3e-12 1.4e-09 38.0 0.0 1 172 4 172 4 174 0.80 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 199 AY701528_00008 - 181 1.5e-07 30.9 0.0 1 1 8.2e-10 3.6e-07 29.7 0.0 18 160 6 138 2 172 0.74 Zeta toxin AAA PF00004.29 132 AY701528_00008 - 181 1.1e-05 25.8 0.1 1 2 1.8e-07 7.7e-05 23.1 0.0 2 34 8 41 7 84 0.77 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 AY701528_00008 - 181 1.1e-05 25.8 0.1 2 2 2.5 1.1e+03 -0.0 0.0 105 131 109 135 92 136 0.71 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 136 AY701528_00008 - 181 2.1e-05 25.0 0.0 1 1 8.4e-08 3.7e-05 24.2 0.0 1 128 10 131 10 138 0.79 AAA domain AAA_28 PF13521.6 163 AY701528_00008 - 181 0.00017 21.9 0.0 1 2 9.1e-07 0.0004 20.7 0.0 2 62 7 71 6 85 0.62 AAA domain AAA_28 PF13521.6 163 AY701528_00008 - 181 0.00017 21.9 0.0 2 2 7.8 3.4e+03 -1.9 0.0 112 129 108 127 94 157 0.52 AAA domain AAA_22 PF13401.6 137 AY701528_00008 - 181 0.00023 21.4 0.0 1 2 2.3e-06 0.00099 19.4 0.0 4 33 3 32 1 84 0.83 AAA domain AAA_22 PF13401.6 137 AY701528_00008 - 181 0.00023 21.4 0.0 2 2 2.3 1e+03 -0.1 0.0 61 98 120 156 96 171 0.74 AAA domain AAA_14 PF13173.6 131 AY701528_00008 - 181 0.0008 19.4 0.0 1 1 2.9e-06 0.0013 18.8 0.0 2 123 4 137 3 145 0.70 AAA domain RuvB_N PF05496.12 159 AY701528_00008 - 181 0.0023 17.7 0.1 1 2 1.3e-05 0.0057 16.4 0.0 36 60 7 31 3 49 0.85 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 AY701528_00008 - 181 0.0023 17.7 0.1 2 2 8.3 3.6e+03 -2.5 0.0 98 114 113 129 105 160 0.72 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 146 AY701528_00008 - 181 0.0023 18.3 0.0 1 1 9.7e-06 0.0042 17.4 0.0 9 35 3 29 1 75 0.87 AAA domain ABC_tran PF00005.27 137 AY701528_00008 - 181 0.0028 18.1 0.2 1 1 7.3e-06 0.0032 18.0 0.2 9 45 2 37 1 172 0.83 ABC transporter KTI12 PF08433.10 272 AY701528_00008 - 181 0.0044 16.5 0.1 1 2 2.1e-05 0.0092 15.5 0.0 3 42 6 44 5 88 0.73 Chromatin associated protein KTI12 KTI12 PF08433.10 272 AY701528_00008 - 181 0.0044 16.5 0.1 2 2 3.9 1.7e+03 -1.8 0.0 111 122 117 128 97 167 0.56 Chromatin associated protein KTI12 AAA_16 PF13191.6 170 AY701528_00008 - 181 0.0046 17.4 0.0 1 1 1.3e-05 0.0056 17.1 0.0 22 63 2 44 1 147 0.84 AAA ATPase domain DUF2075 PF09848.9 363 AY701528_00008 - 181 0.0048 16.2 0.4 1 1 1.3e-05 0.0056 16.0 0.4 2 29 5 32 4 146 0.90 Uncharacterized conserved protein (DUF2075) ATPase_2 PF01637.18 233 AY701528_00008 - 181 0.0076 16.2 0.4 1 2 0.0049 2.2 8.2 0.0 19 49 3 32 1 50 0.75 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 AY701528_00008 - 181 0.0076 16.2 0.4 2 2 0.018 7.8 6.3 0.2 48 112 102 172 93 180 0.65 ATPase domain predominantly from Archaea APS_kinase PF01583.20 158 AY701528_00008 - 181 0.0079 16.1 0.0 1 2 0.00041 0.18 11.7 0.0 1 46 3 46 3 95 0.64 Adenylylsulphate kinase APS_kinase PF01583.20 158 AY701528_00008 - 181 0.0079 16.1 0.0 2 2 0.24 1e+02 2.7 0.0 45 77 119 151 97 175 0.82 Adenylylsulphate kinase Rad17 PF03215.15 186 AY701528_00008 - 181 0.0086 16.0 0.0 1 2 9e-05 0.039 13.9 0.0 45 71 4 30 1 40 0.88 Rad17 P-loop domain Rad17 PF03215.15 186 AY701528_00008 - 181 0.0086 16.0 0.0 2 2 2 8.8e+02 -0.3 0.0 113 146 110 145 100 167 0.71 Rad17 P-loop domain T2SSE PF00437.20 273 AY701528_00008 - 181 0.0086 15.2 0.0 1 2 3.7e-05 0.016 14.3 0.0 130 158 5 33 1 75 0.82 Type II/IV secretion system protein T2SSE PF00437.20 273 AY701528_00008 - 181 0.0086 15.2 0.0 2 2 3.7 1.6e+03 -2.1 0.0 25 25 140 140 100 177 0.50 Type II/IV secretion system protein AAA_30 PF13604.6 192 AY701528_00008 - 181 0.0092 15.7 0.1 1 1 3.6e-05 0.016 15.0 0.1 17 40 3 26 1 39 0.82 AAA domain ATPase PF06745.13 231 AY701528_00008 - 181 0.0098 15.3 1.3 1 2 3.9e-05 0.017 14.5 0.1 18 37 3 22 1 35 0.87 KaiC ATPase PF06745.13 231 AY701528_00008 - 181 0.0098 15.3 1.3 2 2 1.9 8.2e+02 -0.8 0.1 100 112 129 141 99 176 0.47 KaiC AAA_24 PF13479.6 197 AY701528_00008 - 181 0.0099 15.6 0.8 1 1 3.1e-05 0.014 15.2 0.8 3 23 5 30 3 173 0.84 AAA domain Ploopntkinase1 PF18748.1 196 AY701528_00008 - 181 0.011 15.3 0.1 1 2 0.097 42 3.6 0.0 16 41 3 28 1 41 0.82 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 AY701528_00008 - 181 0.011 15.3 0.1 2 2 0.0011 0.46 10.0 0.0 93 165 72 144 54 168 0.77 P-loop Nucleotide Kinase1 SRP54 PF00448.22 196 AY701528_00008 - 181 0.014 15.1 0.2 1 2 7e-05 0.031 13.9 0.1 3 40 6 42 4 49 0.84 SRP54-type protein, GTPase domain SRP54 PF00448.22 196 AY701528_00008 - 181 0.014 15.1 0.2 2 2 5.7 2.5e+03 -2.1 0.0 71 80 118 127 97 169 0.56 SRP54-type protein, GTPase domain DnaB_C PF03796.15 255 AY701528_00008 - 181 0.016 14.6 0.6 1 2 0.00029 0.13 11.6 0.0 17 47 2 32 1 42 0.83 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 AY701528_00008 - 181 0.016 14.6 0.6 2 2 0.38 1.7e+02 1.4 0.2 48 116 103 164 96 178 0.48 DnaB-like helicase C terminal domain NTPase_1 PF03266.15 168 AY701528_00008 - 181 0.021 14.8 0.6 1 2 0.00011 0.049 13.5 0.3 2 22 7 27 6 35 0.85 NTPase NTPase_1 PF03266.15 168 AY701528_00008 - 181 0.021 14.8 0.6 2 2 3.5 1.5e+03 -1.1 0.0 82 82 116 116 62 168 0.64 NTPase TIP49 PF06068.13 351 AY701528_00008 - 181 0.034 13.3 0.3 1 2 0.00026 0.11 11.6 0.0 50 77 4 31 1 46 0.84 TIP49 P-loop domain TIP49 PF06068.13 351 AY701528_00008 - 181 0.034 13.3 0.3 2 2 1.3 5.9e+02 -0.6 0.2 142 182 120 160 100 174 0.71 TIP49 P-loop domain Sigma54_activat PF00158.26 168 AY701528_00008 - 181 0.038 13.7 0.0 1 1 0.00015 0.066 12.9 0.0 25 68 7 57 1 89 0.76 Sigma-54 interaction domain dNK PF01712.19 204 AY701528_00008 - 181 0.039 13.8 0.2 1 2 0.0021 0.94 9.3 0.0 1 52 7 75 7 77 0.66 Deoxynucleoside kinase dNK PF01712.19 204 AY701528_00008 - 181 0.039 13.8 0.2 2 2 0.24 1.1e+02 2.6 0.2 114 156 98 137 92 173 0.64 Deoxynucleoside kinase Cytidylate_kin2 PF13189.6 179 AY701528_00008 - 181 0.055 13.6 1.9 1 2 0.045 19 5.3 0.2 1 23 6 28 6 34 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 AY701528_00008 - 181 0.055 13.6 1.9 2 2 0.0058 2.5 8.2 0.1 107 147 98 138 30 143 0.82 Cytidylate kinase-like family PhoH PF02562.16 205 AY701528_00008 - 181 0.065 12.7 0.1 1 1 0.00033 0.14 11.5 0.1 18 49 3 34 1 36 0.84 PhoH-like protein AAA_11 PF13086.6 261 AY701528_00008 - 181 0.067 13.0 1.4 1 1 0.00028 0.12 12.1 1.4 16 42 3 29 1 176 0.85 AAA domain RNA_helicase PF00910.22 107 AY701528_00008 - 181 0.082 13.3 0.0 1 1 0.00036 0.16 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase AAA_25 PF13481.6 194 AY701528_00008 - 181 0.084 12.4 0.2 1 3 0.0012 0.5 9.9 0.1 32 51 3 22 1 28 0.86 AAA domain AAA_25 PF13481.6 194 AY701528_00008 - 181 0.084 12.4 0.2 2 3 6.3 2.8e+03 -2.3 0.0 118 174 56 74 30 84 0.49 AAA domain AAA_25 PF13481.6 194 AY701528_00008 - 181 0.084 12.4 0.2 3 3 1.6 7.2e+02 -0.4 0.0 61 90 94 122 90 169 0.69 AAA domain MKT1_N PF12247.8 90 AY701528_00008 - 181 0.088 13.2 0.0 1 1 0.00063 0.27 11.6 0.0 14 51 39 74 37 153 0.89 Temperature dependent protein affecting M2 dsRNA replication ATP-synt_ab PF00006.25 213 AY701528_00008 - 181 0.11 12.1 0.0 1 1 0.00035 0.15 11.7 0.0 13 46 3 35 1 127 0.73 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.12 166 AY701528_00008 - 181 0.12 12.3 0.0 1 1 0.0004 0.17 11.8 0.0 1 40 5 45 5 73 0.78 NACHT domain AAA_7 PF12775.7 181 AY701528_00008 - 181 0.14 11.7 0.3 1 2 0.00065 0.28 10.7 0.1 31 63 2 34 1 46 0.80 P-loop containing dynein motor region AAA_7 PF12775.7 181 AY701528_00008 - 181 0.14 11.7 0.3 2 2 4.7 2e+03 -1.9 0.0 61 90 103 132 96 167 0.63 P-loop containing dynein motor region CoaE PF01121.20 179 AY701528_00008 - 181 0.16 11.7 0.9 1 2 0.021 9.3 5.9 0.1 2 22 6 26 5 32 0.87 Dephospho-CoA kinase CoaE PF01121.20 179 AY701528_00008 - 181 0.16 11.7 0.9 2 2 0.053 23 4.6 0.1 125 149 108 132 96 169 0.85 Dephospho-CoA kinase Hydin_ADK PF17213.3 198 AY701528_00008 - 181 0.28 11.4 1.0 1 1 0.0009 0.4 10.9 0.2 2 22 7 27 6 32 0.91 Hydin Adenylate kinase-like domain DpnD-PcfM PF14207.6 46 AY701528_00008 - 181 2.7 8.0 4.9 1 3 0.16 69 3.4 0.1 25 41 98 114 97 115 0.89 DpnD/PcfM-like protein DpnD-PcfM PF14207.6 46 AY701528_00008 - 181 2.7 8.0 4.9 2 3 0.032 14 5.7 0.3 6 33 116 143 116 144 0.91 DpnD/PcfM-like protein DpnD-PcfM PF14207.6 46 AY701528_00008 - 181 2.7 8.0 4.9 3 3 9.6 4.2e+03 -2.3 0.1 12 30 154 172 153 172 0.79 DpnD/PcfM-like protein APH PF01636.23 240 AY701528_00009 - 265 1.2e-15 58.1 0.0 1 2 3.4e-18 7.6e-15 55.5 0.0 5 211 9 207 5 221 0.84 Phosphotransferase enzyme family APH PF01636.23 240 AY701528_00009 - 265 1.2e-15 58.1 0.0 2 2 0.16 3.5e+02 0.9 0.0 58 98 220 261 209 265 0.83 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 AY701528_00009 - 265 1.8e-09 37.5 5.3 1 1 1.5e-12 3.4e-09 36.6 4.7 45 186 72 205 66 229 0.85 Choline/ethanolamine kinase EcKinase PF02958.20 294 AY701528_00009 - 265 0.00022 20.7 0.7 1 3 1.3 3e+03 -2.8 0.0 90 108 22 40 11 45 0.79 Ecdysteroid kinase EcKinase PF02958.20 294 AY701528_00009 - 265 0.00022 20.7 0.7 2 3 9.7e-08 0.00022 20.7 0.7 148 262 90 207 73 216 0.59 Ecdysteroid kinase EcKinase PF02958.20 294 AY701528_00009 - 265 0.00022 20.7 0.7 3 3 0.48 1.1e+03 -1.3 0.0 264 292 234 261 216 263 0.68 Ecdysteroid kinase Fructosamin_kin PF03881.14 288 AY701528_00009 - 265 0.023 13.9 0.6 1 2 0.69 1.5e+03 -1.9 0.0 52 75 34 57 13 64 0.60 Fructosamine kinase Fructosamin_kin PF03881.14 288 AY701528_00009 - 265 0.023 13.9 0.6 2 2 2.2e-05 0.05 12.8 0.3 189 241 165 220 113 231 0.73 Fructosamine kinase Ribosomal_S13 PF00416.22 128 AY701528_00009 - 265 0.029 14.8 1.8 1 3 1.6 3.6e+03 -1.7 0.0 73 102 32 61 26 65 0.69 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 AY701528_00009 - 265 0.029 14.8 1.8 2 3 3.4e-05 0.076 13.4 0.1 37 91 115 173 82 187 0.81 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 AY701528_00009 - 265 0.029 14.8 1.8 3 3 1.2 2.7e+03 -1.3 0.1 51 76 228 254 215 264 0.54 Ribosomal protein S13/S18 YppF PF14178.6 59 AY701528_00009 - 265 0.37 10.7 4.0 1 2 0.00047 1.1 9.2 0.1 25 41 113 129 99 138 0.86 YppF-like protein YppF PF14178.6 59 AY701528_00009 - 265 0.37 10.7 4.0 2 2 0.17 3.7e+02 1.1 1.0 20 42 154 176 131 178 0.84 YppF-like protein ABC2_membrane_3 PF12698.7 345 AY701528_00009 - 265 0.69 9.0 6.6 1 2 0.051 1.1e+02 1.7 0.5 85 132 9 54 4 68 0.70 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 345 AY701528_00009 - 265 0.69 9.0 6.6 2 2 9.8e-05 0.22 10.6 0.9 20 116 74 184 71 257 0.71 ABC-2 family transporter protein BLOC1_2 PF10046.9 96 AY701528_00009 - 265 3.3 8.1 9.1 1 4 0.00048 1.1 9.6 0.3 12 47 14 49 6 55 0.86 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 AY701528_00009 - 265 3.3 8.1 9.1 2 4 0.15 3.3e+02 1.7 0.9 40 81 95 132 87 146 0.48 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 AY701528_00009 - 265 3.3 8.1 9.1 3 4 0.32 7.2e+02 0.6 0.2 9 25 119 135 116 156 0.71 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 AY701528_00009 - 265 3.3 8.1 9.1 4 4 1 2.3e+03 -1.0 0.1 54 68 248 262 232 264 0.55 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4111 PF13427.6 103 AY701528_00010 - 264 1.6e-23 82.9 0.0 1 2 0.75 3.4e+03 -1.7 0.0 15 30 10 25 7 29 0.79 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 AY701528_00010 - 264 1.6e-23 82.9 0.0 2 2 1.3e-26 5.6e-23 81.1 0.0 1 100 152 249 152 251 0.96 Domain of unknown function (DUF4111) NTP_transf_2 PF01909.23 95 AY701528_00010 - 264 1.2e-06 28.7 0.6 1 1 5.4e-10 2.4e-06 27.7 0.5 4 48 18 99 11 163 0.69 Nucleotidyltransferase domain Polbeta PF18765.1 93 AY701528_00010 - 264 0.00032 20.7 0.1 1 1 2e-07 0.00088 19.3 0.1 3 63 18 80 16 98 0.70 Polymerase beta, Nucleotidyltransferase Adenyl_cycl_N PF12633.7 199 AY701528_00010 - 264 0.022 14.6 0.0 1 1 7.8e-06 0.035 14.0 0.0 89 152 23 87 4 98 0.81 Adenylate cyclase NT domain Acetyltransf_1 PF00583.25 117 AY701528_00011 - 142 9e-17 61.4 0.0 1 1 4.3e-20 1.1e-16 61.1 0.0 19 116 25 123 7 124 0.83 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 127 AY701528_00011 - 142 1.4e-09 38.0 0.0 1 1 6.9e-13 1.8e-09 37.6 0.0 20 105 28 123 7 131 0.86 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 76 AY701528_00011 - 142 4.8e-08 33.3 0.1 1 1 3.1e-11 7.8e-08 32.6 0.1 5 73 41 123 37 123 0.68 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 AY701528_00011 - 142 0.0013 18.7 0.0 1 1 7.7e-07 0.002 18.1 0.0 23 79 69 126 48 133 0.85 FR47-like protein Acetyltransf_CG PF14542.6 80 AY701528_00011 - 142 0.0045 17.1 0.0 1 1 3.1e-06 0.0078 16.3 0.0 19 55 62 98 41 101 0.80 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 138 AY701528_00011 - 142 0.007 17.0 0.0 1 1 3.2e-06 0.0082 16.8 0.0 49 136 35 123 4 125 0.77 Acetyltransferase (GNAT) domain MOZ_SAS PF01853.18 179 AY701528_00011 - 142 0.034 13.8 0.0 1 1 1.6e-05 0.04 13.6 0.0 76 102 66 92 9 115 0.75 MOZ/SAS family APH PF01636.23 240 AY701528_00012 - 297 2.3e-23 83.4 0.0 1 1 5e-27 3e-23 83.0 0.0 2 238 18 251 17 253 0.86 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 AY701528_00012 - 297 0.0019 17.8 1.2 1 1 7.7e-07 0.0046 16.6 1.2 68 175 112 211 101 226 0.72 Choline/ethanolamine kinase 120_Rick_ant PF12574.8 235 AY701528_00012 - 297 0.12 11.5 2.5 1 2 0.00021 1.3 8.2 0.4 180 216 17 53 13 56 0.90 120 KDa Rickettsia surface antigen 120_Rick_ant PF12574.8 235 AY701528_00012 - 297 0.12 11.5 2.5 2 2 0.0014 8.7 5.5 0.4 9 56 46 95 41 106 0.80 120 KDa Rickettsia surface antigen HTH_23 PF13384.6 50 AY701528_00013 - 167 0.0036 17.1 0.0 1 2 1.8e-05 0.045 13.6 0.0 21 37 41 57 34 66 0.91 Homeodomain-like domain HTH_23 PF13384.6 50 AY701528_00013 - 167 0.0036 17.1 0.0 2 2 0.15 3.8e+02 1.0 0.0 32 48 96 110 94 112 0.83 Homeodomain-like domain HTH_17 PF12728.7 51 AY701528_00013 - 167 0.046 13.9 0.7 1 2 0.00047 1.2 9.4 0.1 7 35 43 70 40 74 0.81 Helix-turn-helix domain HTH_17 PF12728.7 51 AY701528_00013 - 167 0.046 13.9 0.7 2 2 0.056 1.4e+02 2.7 0.0 15 40 95 121 95 133 0.69 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 AY701528_00013 - 167 0.068 12.9 0.0 1 1 7.7e-05 0.2 11.4 0.0 32 47 43 58 40 59 0.92 Sigma-70, region 4 HTH_28 PF13518.6 52 AY701528_00013 - 167 0.097 12.8 0.0 1 1 7e-05 0.18 12.0 0.0 14 30 39 55 25 58 0.84 Helix-turn-helix domain HTH_11 PF08279.12 55 AY701528_00013 - 167 0.12 12.4 0.1 1 1 0.00012 0.31 11.0 0.1 19 35 41 57 24 68 0.85 HTH domain HU-CCDC81_euk_2 PF18289.1 75 AY701528_00013 - 167 0.12 12.6 0.0 1 1 9.2e-05 0.23 11.6 0.0 4 25 37 58 34 68 0.86 CCDC81 eukaryotic HU domain 2 HTH_Tnp_ISL3 PF13542.6 52 AY701528_00013 - 167 0.16 11.4 0.0 1 1 0.00012 0.32 10.5 0.0 28 48 38 58 35 59 0.85 Helix-turn-helix domain of transposase family ISL3 HxlR PF01638.17 91 AY701528_00014 - 103 2.7e-22 78.4 0.0 1 1 1.6e-25 3.2e-22 78.2 0.0 1 71 30 100 30 103 0.97 HxlR-like helix-turn-helix HTH_5 PF01022.20 47 AY701528_00014 - 103 0.00012 21.9 0.0 1 1 1e-07 0.00021 21.1 0.0 7 46 39 79 38 80 0.95 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 61 AY701528_00014 - 103 0.00023 21.1 0.0 1 1 1.8e-07 0.00036 20.5 0.0 15 57 39 81 38 82 0.94 Helix-turn-helix domain MarR PF01047.22 59 AY701528_00014 - 103 0.00035 20.4 0.0 1 1 3e-07 0.00059 19.7 0.0 16 51 46 82 41 85 0.92 MarR family MarR_2 PF12802.7 62 AY701528_00014 - 103 0.00061 19.6 0.0 1 1 5e-07 0.00099 19.0 0.0 10 54 39 81 38 85 0.89 MarR family PadR PF03551.14 75 AY701528_00014 - 103 0.0015 18.5 0.1 1 1 1.2e-06 0.0024 17.8 0.1 27 71 58 100 48 102 0.85 Transcriptional regulator PadR-like family HTH_34 PF13601.6 80 AY701528_00014 - 103 0.0064 16.6 0.0 1 1 4.5e-06 0.0089 16.2 0.0 12 66 45 99 38 101 0.82 Winged helix DNA-binding domain DUF1495 PF07381.11 90 AY701528_00014 - 103 0.12 12.2 0.0 1 2 0.87 1.7e+03 -1.1 0.0 4 20 29 45 26 65 0.64 Winged helix DNA-binding domain (DUF1495) DUF1495 PF07381.11 90 AY701528_00014 - 103 0.12 12.2 0.0 2 2 0.00021 0.42 10.5 0.0 57 86 70 101 66 102 0.76 Winged helix DNA-binding domain (DUF1495) Replic_Relax PF13814.6 192 AY701528_00014 - 103 0.15 12.1 0.0 1 1 0.00012 0.23 11.5 0.0 18 68 56 101 50 102 0.78 Replication-relaxation Putative_PNPOx PF01243.20 88 AY701528_00015 - 133 4.3e-12 46.0 0.0 1 1 1e-15 6.2e-12 45.5 0.0 3 87 5 85 3 86 0.97 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 149 AY701528_00015 - 133 3.7e-06 26.6 0.0 1 1 6.8e-10 4.1e-06 26.5 0.0 2 98 3 95 2 127 0.84 Pyridoxamine 5'-phosphate oxidase like Pyridox_ox_2 PF12900.7 141 AY701528_00015 - 133 0.063 13.3 0.0 1 1 1.2e-05 0.072 13.1 0.0 3 62 5 66 3 108 0.84 Pyridoxamine 5'-phosphate oxidase IstB_IS21 PF01695.17 178 AY701528_00016 - 252 1.2e-58 197.8 1.9 1 2 0.32 2.4e+02 1.3 0.1 80 124 4 48 2 55 0.84 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 AY701528_00016 - 252 1.2e-58 197.8 1.9 2 2 4.8e-61 3.6e-58 196.2 0.2 5 178 58 231 52 231 0.98 IstB-like ATP binding protein Bac_DnaA PF00308.18 219 AY701528_00016 - 252 1.3e-08 35.0 0.6 1 2 4.1 3.1e+03 -2.2 0.1 90 115 25 50 12 67 0.60 Bacterial dnaA protein Bac_DnaA PF00308.18 219 AY701528_00016 - 252 1.3e-08 35.0 0.6 2 2 1.7e-11 1.3e-08 35.0 0.6 37 136 103 200 97 230 0.89 Bacterial dnaA protein RNA_helicase PF00910.22 107 AY701528_00016 - 252 1.7e-05 25.1 0.4 1 2 0.24 1.8e+02 2.6 0.1 41 97 24 80 4 83 0.71 RNA helicase RNA_helicase PF00910.22 107 AY701528_00016 - 252 1.7e-05 25.1 0.4 2 2 6.3e-07 0.00047 20.5 0.0 1 74 103 187 103 206 0.86 RNA helicase PhoH PF02562.16 205 AY701528_00016 - 252 3.5e-05 23.4 0.0 1 1 1.1e-07 8.2e-05 22.2 0.0 12 75 93 155 80 185 0.76 PhoH-like protein AAA_22 PF13401.6 137 AY701528_00016 - 252 5.3e-05 23.5 0.2 1 2 3.9e-05 0.029 14.6 0.1 5 48 100 137 95 143 0.80 AAA domain AAA_22 PF13401.6 137 AY701528_00016 - 252 5.3e-05 23.5 0.2 2 2 0.013 9.4 6.5 0.0 80 115 146 189 129 200 0.67 AAA domain AAA PF00004.29 132 AY701528_00016 - 252 6.8e-05 23.3 0.1 1 1 1.6e-07 0.00012 22.5 0.1 1 74 103 176 103 230 0.70 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 168 AY701528_00016 - 252 7.7e-05 22.5 0.1 1 2 6.9e-06 0.0051 16.5 0.0 18 66 96 144 84 152 0.85 Sigma-54 interaction domain Sigma54_activat PF00158.26 168 AY701528_00016 - 252 7.7e-05 22.5 0.1 2 2 0.06 45 3.7 0.0 96 122 164 191 155 204 0.76 Sigma-54 interaction domain AAA_16 PF13191.6 170 AY701528_00016 - 252 8.1e-05 23.1 0.0 1 1 2e-07 0.00015 22.2 0.0 25 103 101 168 91 224 0.74 AAA ATPase domain CbiA PF01656.23 128 AY701528_00016 - 252 0.00047 20.2 0.0 1 1 1.1e-06 0.00079 19.5 0.0 3 43 104 144 103 250 0.64 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.6 197 AY701528_00016 - 252 0.00062 19.5 0.7 1 1 2.1e-06 0.0016 18.2 0.7 2 76 100 172 99 210 0.76 AAA domain AAA_14 PF13173.6 131 AY701528_00016 - 252 0.00073 19.6 0.3 1 2 4.1 3.1e+03 -1.8 0.1 52 75 23 43 3 65 0.48 AAA domain AAA_14 PF13173.6 131 AY701528_00016 - 252 0.00073 19.6 0.3 2 2 9.8e-07 0.00073 19.6 0.3 3 89 101 189 99 228 0.67 AAA domain AAA_7 PF12775.7 181 AY701528_00016 - 252 0.00099 18.7 0.1 1 2 3.6e-06 0.0027 17.3 0.0 29 91 96 157 85 169 0.86 P-loop containing dynein motor region AAA_7 PF12775.7 181 AY701528_00016 - 252 0.00099 18.7 0.1 2 2 7.2 5.4e+03 -3.3 0.0 23 178 218 233 209 237 0.56 P-loop containing dynein motor region AFG1_ATPase PF03969.16 362 AY701528_00016 - 252 0.0026 16.7 0.1 1 1 4.9e-06 0.0036 16.2 0.1 24 208 64 242 44 248 0.73 AFG1-like ATPase NTPase_1 PF03266.15 168 AY701528_00016 - 252 0.0033 17.4 1.3 1 2 0.032 24 4.8 0.2 1 20 102 121 102 132 0.80 NTPase NTPase_1 PF03266.15 168 AY701528_00016 - 252 0.0033 17.4 1.3 2 2 0.00018 0.14 12.1 0.1 67 129 125 198 116 218 0.77 NTPase NACHT PF05729.12 166 AY701528_00016 - 252 0.0033 17.4 0.2 1 1 1.8e-05 0.014 15.4 0.1 3 38 103 133 101 200 0.76 NACHT domain AAA_25 PF13481.6 194 AY701528_00016 - 252 0.0075 15.9 0.3 1 3 1.3 9.9e+02 -0.8 0.0 126 158 16 50 5 74 0.68 AAA domain AAA_25 PF13481.6 194 AY701528_00016 - 252 0.0075 15.9 0.3 2 3 0.0001 0.077 12.6 0.0 29 60 96 127 67 133 0.89 AAA domain AAA_25 PF13481.6 194 AY701528_00016 - 252 0.0075 15.9 0.3 3 3 0.96 7.1e+02 -0.4 0.0 131 150 150 169 132 179 0.87 AAA domain AAA_5 PF07728.14 138 AY701528_00016 - 252 0.014 15.4 0.1 1 2 3.6 2.7e+03 -1.7 0.0 12 34 34 56 33 59 0.87 AAA domain (dynein-related subfamily) AAA_5 PF07728.14 138 AY701528_00016 - 252 0.014 15.4 0.1 2 2 6.1e-05 0.045 13.7 0.1 1 30 102 132 102 192 0.78 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 167 AY701528_00016 - 252 0.016 15.1 1.3 1 2 2 1.5e+03 -1.1 0.0 33 63 5 37 2 75 0.56 RsgA GTPase RsgA_GTPase PF03193.16 167 AY701528_00016 - 252 0.016 15.1 1.3 2 2 4.9e-05 0.037 13.9 0.0 82 119 83 120 68 137 0.78 RsgA GTPase Roc PF08477.13 120 AY701528_00016 - 252 0.032 14.5 0.0 1 1 0.00012 0.088 13.0 0.0 2 21 103 122 102 158 0.72 Ras of Complex, Roc, domain of DAPkinase AAA_33 PF13671.6 143 AY701528_00016 - 252 0.045 13.9 0.0 1 1 0.0001 0.075 13.2 0.0 2 93 103 217 103 230 0.71 AAA domain AAA_29 PF13555.6 61 AY701528_00016 - 252 0.072 12.8 0.2 1 2 1.3 9.7e+02 -0.4 0.0 37 57 36 57 34 60 0.74 P-loop containing region of AAA domain AAA_29 PF13555.6 61 AY701528_00016 - 252 0.072 12.8 0.2 2 2 0.00075 0.56 10.0 0.0 8 38 84 116 82 124 0.79 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 213 AY701528_00016 - 252 0.1 12.2 0.1 1 2 0.58 4.3e+02 0.4 0.0 167 203 18 54 15 62 0.85 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab PF00006.25 213 AY701528_00016 - 252 0.1 12.2 0.1 2 2 0.0011 0.83 9.3 0.0 16 125 102 248 97 252 0.73 ATP synthase alpha/beta family, nucleotide-binding domain TsaE PF02367.17 125 AY701528_00016 - 252 0.13 12.2 0.1 1 1 0.0004 0.3 11.1 0.1 19 74 100 164 80 207 0.66 Threonylcarbamoyl adenosine biosynthesis protein TsaE ResIII PF04851.15 171 AY701528_00016 - 252 0.15 12.1 3.1 1 1 0.00023 0.17 11.8 2.4 21 82 88 155 29 233 0.70 Type III restriction enzyme, res subunit rve PF00665.26 119 AY701528_00017 - 269 1.7e-13 50.8 0.0 1 1 3.8e-17 3.4e-13 49.8 0.0 29 115 1 97 1 99 0.97 Integrase core domain Phage_portal PF04860.12 314 AY701528_00017 - 269 0.0087 15.3 0.8 1 2 2e-05 0.18 11.0 0.0 188 235 94 143 80 162 0.83 Phage portal protein Phage_portal PF04860.12 314 AY701528_00017 - 269 0.0087 15.3 0.8 2 2 0.0057 51 2.9 0.2 36 89 172 227 153 264 0.69 Phage portal protein DDE_Tnp_IS1595 PF12762.7 153 AY701528_00018 - 345 3.8e-15 56.2 1.0 1 1 5.1e-18 6.5e-15 55.5 1.0 2 145 147 299 146 301 0.81 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 46 AY701528_00018 - 345 1.2e-06 28.4 1.3 1 1 2.3e-09 3e-06 27.1 1.3 7 45 38 80 36 81 0.91 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 35 AY701528_00018 - 345 0.0007 19.3 6.9 1 2 5.5e-07 0.0007 19.3 6.9 8 34 52 78 51 79 0.98 InsA N-terminal domain Zn_Tnp_IS1 PF03811.13 35 AY701528_00018 - 345 0.0007 19.3 6.9 2 2 3.9 5e+03 -2.7 0.1 15 23 200 208 196 210 0.70 InsA N-terminal domain HTH_30 PF13556.6 59 AY701528_00018 - 345 0.013 15.3 0.0 1 1 2e-05 0.025 14.4 0.0 10 29 108 127 102 139 0.91 PucR C-terminal helix-turn-helix domain HTH_23 PF13384.6 50 AY701528_00018 - 345 0.016 15.0 0.0 1 1 2.8e-05 0.036 13.9 0.0 16 40 109 133 102 139 0.87 Homeodomain-like domain PhnJ PF06007.11 275 AY701528_00018 - 345 0.061 12.3 0.1 1 1 9.4e-05 0.12 11.3 0.1 218 266 32 78 25 88 0.91 Phosphonate metabolism protein PhnJ Lar_restr_allev PF14354.6 62 AY701528_00018 - 345 0.062 13.7 3.3 1 1 4.9e-05 0.063 13.7 1.9 6 36 52 80 49 103 0.84 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 40 AY701528_00018 - 345 0.063 13.4 0.7 1 2 0.096 1.2e+02 2.9 0.2 27 38 50 62 38 63 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 AY701528_00018 - 345 0.063 13.4 0.7 2 2 0.0025 3.2 7.9 0.0 6 16 73 83 72 93 0.86 Zinc ribbon domain A2L_zn_ribbon PF08792.10 33 AY701528_00018 - 345 0.069 12.9 8.5 1 2 0.00042 0.54 10.0 0.2 20 32 48 60 47 61 0.86 A2L zinc ribbon domain A2L_zn_ribbon PF08792.10 33 AY701528_00018 - 345 0.069 12.9 8.5 2 2 0.0019 2.4 8.0 0.1 22 32 73 83 71 84 0.87 A2L zinc ribbon domain zf-C2H2 PF00096.26 23 AY701528_00018 - 345 0.22 12.0 0.2 1 2 2.7 3.5e+03 -1.2 0.9 2 7 51 56 51 63 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 AY701528_00018 - 345 0.22 12.0 0.2 2 2 0.00017 0.22 12.0 0.2 1 10 73 82 73 87 0.92 Zinc finger, C2H2 type ADK_lid PF05191.14 36 AY701528_00018 - 345 0.25 11.4 4.0 1 2 0.13 1.7e+02 2.3 1.0 2 10 50 58 50 68 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 AY701528_00018 - 345 0.25 11.4 4.0 2 2 0.0014 1.8 8.6 0.1 1 11 72 82 72 93 0.87 Adenylate kinase, active site lid Nudix_N_2 PF14803.6 34 AY701528_00018 - 345 0.73 9.8 8.7 1 1 0.0044 5.6 7.0 8.7 3 29 52 79 50 80 0.93 Nudix N-terminal DUF3268 PF11672.8 118 AY701528_00018 - 345 0.82 10.0 5.1 1 2 0.013 17 5.8 3.0 4 41 51 83 48 142 0.84 zinc-finger-containing domain DUF3268 PF11672.8 118 AY701528_00018 - 345 0.82 10.0 5.1 2 2 0.052 66 3.9 0.0 12 58 217 263 213 276 0.85 zinc-finger-containing domain TF_Zn_Ribbon PF08271.12 43 AY701528_00018 - 345 5.5 6.6 7.1 1 2 0.2 2.6e+02 1.3 2.2 20 28 50 58 46 59 0.83 TFIIB zinc-binding TF_Zn_Ribbon PF08271.12 43 AY701528_00018 - 345 5.5 6.6 7.1 2 2 0.041 53 3.4 6.8 2 37 51 92 50 95 0.77 TFIIB zinc-binding AAA_18 PF13238.6 130 AY701528_00019 - 181 1.9e-14 54.3 0.0 1 1 6.3e-17 2.6e-14 53.9 0.0 1 122 7 133 7 141 0.78 AAA domain AAA_33 PF13671.6 143 AY701528_00019 - 181 3.6e-10 40.2 0.0 1 1 1.3e-12 5.2e-10 39.6 0.0 2 135 7 143 6 146 0.79 AAA domain CPT PF07931.12 174 AY701528_00019 - 181 1.6e-09 37.9 0.0 1 1 7.5e-12 3.1e-09 36.9 0.0 1 172 4 172 4 174 0.81 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 199 AY701528_00019 - 181 1.6e-09 37.3 0.1 1 1 8e-12 3.3e-09 36.3 0.1 18 161 6 139 2 174 0.80 Zeta toxin AAA_28 PF13521.6 163 AY701528_00019 - 181 7.3e-06 26.3 0.3 1 2 7.7e-08 3.1e-05 24.3 0.0 2 65 7 74 6 85 0.72 AAA domain AAA_28 PF13521.6 163 AY701528_00019 - 181 7.3e-06 26.3 0.3 2 2 2.1 8.5e+02 0.1 0.1 70 88 139 160 88 178 0.45 AAA domain AAA PF00004.29 132 AY701528_00019 - 181 1.1e-05 25.9 0.0 1 2 1e-07 4.1e-05 24.0 0.0 1 25 7 31 7 83 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 AY701528_00019 - 181 1.1e-05 25.9 0.0 2 2 3.2 1.3e+03 -0.2 0.0 109 131 113 135 96 172 0.72 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 137 AY701528_00019 - 181 1.8e-05 25.0 0.0 1 2 1.8e-07 7.5e-05 23.0 0.0 4 43 3 42 1 87 0.83 AAA domain AAA_22 PF13401.6 137 AY701528_00019 - 181 1.8e-05 25.0 0.0 2 2 2.4 9.9e+02 -0.0 0.0 62 85 121 143 91 180 0.53 AAA domain AAA_17 PF13207.6 136 AY701528_00019 - 181 5.3e-05 23.7 0.1 1 1 5.2e-07 0.00021 21.7 0.1 1 128 10 131 10 139 0.75 AAA domain AAA_16 PF13191.6 170 AY701528_00019 - 181 0.00029 21.3 0.0 1 1 8.5e-07 0.00035 21.0 0.0 22 62 2 43 1 147 0.78 AAA ATPase domain DUF2075 PF09848.9 363 AY701528_00019 - 181 0.0011 18.3 0.2 1 1 3.2e-06 0.0013 18.0 0.2 2 27 5 32 4 132 0.90 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 131 AY701528_00019 - 181 0.0014 18.7 0.0 1 1 5.5e-06 0.0022 18.0 0.0 2 123 4 137 3 145 0.59 AAA domain AAA_19 PF13245.6 146 AY701528_00019 - 181 0.0015 18.9 0.2 1 2 7.8e-06 0.0032 17.8 0.0 9 39 3 33 1 51 0.84 AAA domain AAA_19 PF13245.6 146 AY701528_00019 - 181 0.0015 18.9 0.2 2 2 9.8 4e+03 -2.0 0.0 116 116 131 131 97 172 0.60 AAA domain KTI12 PF08433.10 272 AY701528_00019 - 181 0.0018 17.8 0.1 1 2 1.1e-05 0.0044 16.5 0.0 3 42 6 44 5 87 0.77 Chromatin associated protein KTI12 KTI12 PF08433.10 272 AY701528_00019 - 181 0.0018 17.8 0.1 2 2 3.3 1.3e+03 -1.5 0.0 65 65 129 129 98 174 0.60 Chromatin associated protein KTI12 AAA_30 PF13604.6 192 AY701528_00019 - 181 0.0021 17.8 0.1 1 1 9.6e-06 0.0039 16.9 0.1 17 40 3 26 1 39 0.84 AAA domain ABC_tran PF00005.27 137 AY701528_00019 - 181 0.0043 17.6 0.0 1 1 1.1e-05 0.0046 17.5 0.0 9 51 2 43 1 172 0.81 ABC transporter TIP49 PF06068.13 351 AY701528_00019 - 181 0.0046 16.2 0.3 1 2 3.8e-05 0.015 14.5 0.0 50 75 4 29 1 46 0.81 TIP49 P-loop domain TIP49 PF06068.13 351 AY701528_00019 - 181 0.0046 16.2 0.3 2 2 1.5 5.9e+02 -0.6 0.2 141 178 119 156 102 172 0.73 TIP49 P-loop domain T2SSE PF00437.20 273 AY701528_00019 - 181 0.0056 15.8 0.0 1 1 2.1e-05 0.0086 15.2 0.0 130 154 5 29 1 70 0.87 Type II/IV secretion system protein AAA_24 PF13479.6 197 AY701528_00019 - 181 0.0071 16.1 0.1 1 1 2e-05 0.0082 15.9 0.1 4 32 6 39 3 159 0.81 AAA domain ATPase PF06745.13 231 AY701528_00019 - 181 0.0082 15.5 0.7 1 2 4.3e-05 0.018 14.4 0.1 18 38 3 23 1 39 0.87 KaiC ATPase PF06745.13 231 AY701528_00019 - 181 0.0082 15.5 0.7 2 2 2.5 1e+03 -1.1 0.1 99 129 128 159 98 175 0.51 KaiC APS_kinase PF01583.20 158 AY701528_00019 - 181 0.0099 15.8 0.0 1 2 0.00018 0.073 13.0 0.0 1 47 3 47 3 110 0.67 Adenylylsulphate kinase APS_kinase PF01583.20 158 AY701528_00019 - 181 0.0099 15.8 0.0 2 2 0.86 3.5e+02 1.0 0.0 44 74 118 148 97 158 0.73 Adenylylsulphate kinase AAA_25 PF13481.6 194 AY701528_00019 - 181 0.013 15.1 0.1 1 2 8.3e-05 0.034 13.7 0.1 32 54 3 25 1 28 0.88 AAA domain AAA_25 PF13481.6 194 AY701528_00019 - 181 0.013 15.1 0.1 2 2 7.3 3e+03 -2.4 0.0 118 174 56 74 30 85 0.48 AAA domain NTPase_1 PF03266.15 168 AY701528_00019 - 181 0.014 15.3 1.2 1 2 6.7e-05 0.027 14.4 0.2 2 22 7 27 6 36 0.88 NTPase NTPase_1 PF03266.15 168 AY701528_00019 - 181 0.014 15.3 1.2 2 2 3.6 1.5e+03 -1.0 0.0 26 82 102 158 96 173 0.59 NTPase DnaB_C PF03796.15 255 AY701528_00019 - 181 0.017 14.5 0.7 1 2 0.00014 0.055 12.8 0.0 17 47 2 32 1 41 0.84 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 AY701528_00019 - 181 0.017 14.5 0.7 2 2 1.2 4.8e+02 -0.1 0.2 48 116 103 172 96 180 0.46 DnaB-like helicase C terminal domain SRP54 PF00448.22 196 AY701528_00019 - 181 0.017 14.7 0.0 1 1 9.1e-05 0.037 13.7 0.0 3 40 6 42 4 46 0.81 SRP54-type protein, GTPase domain RuvB_N PF05496.12 159 AY701528_00019 - 181 0.023 14.5 0.0 1 2 0.00016 0.066 12.9 0.0 36 59 7 30 3 46 0.86 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 AY701528_00019 - 181 0.023 14.5 0.0 2 2 8.1 3.3e+03 -2.3 0.0 108 127 101 120 98 134 0.59 Holliday junction DNA helicase RuvB P-loop domain AAA_11 PF13086.6 261 AY701528_00019 - 181 0.024 14.4 1.4 1 1 0.00016 0.066 13.0 1.4 16 42 3 29 1 179 0.78 AAA domain Hydin_ADK PF17213.3 198 AY701528_00019 - 181 0.025 14.9 0.2 1 2 6e-05 0.025 14.9 0.2 2 22 7 27 6 31 0.93 Hydin Adenylate kinase-like domain Hydin_ADK PF17213.3 198 AY701528_00019 - 181 0.025 14.9 0.2 2 2 6.2 2.5e+03 -1.5 0.1 82 82 138 138 101 178 0.43 Hydin Adenylate kinase-like domain AAA_7 PF12775.7 181 AY701528_00019 - 181 0.025 14.1 0.6 1 2 0.00025 0.1 12.1 0.0 31 64 2 35 1 47 0.83 P-loop containing dynein motor region AAA_7 PF12775.7 181 AY701528_00019 - 181 0.025 14.1 0.6 2 2 1.5 6e+02 -0.2 0.1 56 91 98 133 95 169 0.82 P-loop containing dynein motor region Viral_helicase1 PF01443.18 234 AY701528_00019 - 181 0.027 14.2 0.0 1 1 0.00011 0.044 13.5 0.0 1 60 7 75 7 88 0.65 Viral (Superfamily 1) RNA helicase ArsA_ATPase PF02374.15 305 AY701528_00019 - 181 0.035 13.3 0.1 1 2 0.00022 0.088 12.0 0.0 2 44 5 46 4 84 0.80 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 AY701528_00019 - 181 0.035 13.3 0.1 2 2 2.5 1e+03 -1.4 0.1 161 172 136 147 98 175 0.49 Anion-transporting ATPase NACHT PF05729.12 166 AY701528_00019 - 181 0.035 14.0 0.0 1 1 0.00014 0.056 13.4 0.0 1 31 5 35 5 73 0.75 NACHT domain Sigma54_activat PF00158.26 168 AY701528_00019 - 181 0.041 13.6 0.0 1 1 0.00019 0.077 12.7 0.0 25 67 7 56 1 95 0.75 Sigma-54 interaction domain Rad17 PF03215.15 186 AY701528_00019 - 181 0.043 13.7 0.0 1 2 0.00032 0.13 12.2 0.0 45 69 4 28 1 41 0.87 Rad17 P-loop domain Rad17 PF03215.15 186 AY701528_00019 - 181 0.043 13.7 0.0 2 2 4.2 1.7e+03 -1.3 0.0 113 146 110 145 97 169 0.63 Rad17 P-loop domain MKT1_N PF12247.8 90 AY701528_00019 - 181 0.044 14.2 0.0 1 1 0.00024 0.099 13.0 0.0 14 52 39 75 35 148 0.89 Temperature dependent protein affecting M2 dsRNA replication NB-ARC PF00931.22 252 AY701528_00019 - 181 0.047 12.9 0.0 1 1 0.00021 0.087 12.0 0.0 21 47 5 30 1 45 0.84 NB-ARC domain ATPase_2 PF01637.18 233 AY701528_00019 - 181 0.059 13.3 0.1 1 2 0.0093 3.8 7.4 0.0 19 54 3 38 1 65 0.80 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 AY701528_00019 - 181 0.059 13.3 0.1 2 2 0.086 35 4.2 0.1 47 83 101 146 91 179 0.49 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 107 AY701528_00019 - 181 0.067 13.6 0.0 1 1 0.00029 0.12 12.8 0.0 1 35 7 42 7 77 0.71 RNA helicase PG_binding_3 PF09374.10 76 AY701528_00019 - 181 0.071 13.4 0.1 1 2 0.79 3.2e+02 1.7 0.0 26 63 17 57 11 78 0.69 Predicted Peptidoglycan domain PG_binding_3 PF09374.10 76 AY701528_00019 - 181 0.071 13.4 0.1 2 2 0.0028 1.1 9.5 0.0 13 39 78 104 69 138 0.73 Predicted Peptidoglycan domain IPT PF01745.16 233 AY701528_00019 - 181 0.077 12.4 0.2 1 2 0.00061 0.25 10.7 0.1 3 25 6 28 4 41 0.90 Isopentenyl transferase IPT PF01745.16 233 AY701528_00019 - 181 0.077 12.4 0.2 2 2 2 8.3e+02 -0.8 0.0 193 214 126 147 83 164 0.72 Isopentenyl transferase PhoH PF02562.16 205 AY701528_00019 - 181 0.086 12.3 0.1 1 1 0.0004 0.16 11.4 0.1 18 43 3 28 1 36 0.81 PhoH-like protein IstB_IS21 PF01695.17 178 AY701528_00019 - 181 0.088 12.5 0.0 1 1 0.00043 0.18 11.6 0.0 48 70 5 27 1 47 0.84 IstB-like ATP binding protein ATP-synt_ab PF00006.25 213 AY701528_00019 - 181 0.094 12.4 0.0 1 1 0.00026 0.1 12.2 0.0 13 49 3 99 1 176 0.70 ATP synthase alpha/beta family, nucleotide-binding domain AAA_3 PF07726.11 131 AY701528_00019 - 181 0.1 12.5 0.1 1 2 0.00079 0.32 10.8 0.0 2 29 7 34 6 43 0.82 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 131 AY701528_00019 - 181 0.1 12.5 0.1 2 2 5 2e+03 -1.5 0.0 76 91 130 145 119 171 0.70 ATPase family associated with various cellular activities (AAA) Ploopntkinase3 PF18751.1 185 AY701528_00019 - 181 0.11 12.4 0.6 1 3 0.00094 0.38 10.6 0.0 3 33 4 34 1 49 0.80 P-loop Nucleotide Kinase3 Ploopntkinase3 PF18751.1 185 AY701528_00019 - 181 0.11 12.4 0.6 2 3 9.5 3.9e+03 -2.4 0.0 101 115 67 84 59 98 0.72 P-loop Nucleotide Kinase3 Ploopntkinase3 PF18751.1 185 AY701528_00019 - 181 0.11 12.4 0.6 3 3 3.2 1.3e+03 -0.9 0.1 108 144 101 138 90 157 0.70 P-loop Nucleotide Kinase3 APH PF01636.23 240 AY701528_00020 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 AY701528_00020 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 AY701528_00020 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 AY701528_00020 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 AY701528_00020 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 AY701528_00020 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 AY701528_00021 - 139 4.2e-51 174.0 0.1 1 1 2.7e-55 4.8e-51 173.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase Adenyl_transf PF04439.12 279 AY701528_00022 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 AY701528_00023 - 180 5.6e-20 71.7 0.1 1 1 3.8e-23 7.6e-20 71.3 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 AY701528_00023 - 180 1.7e-13 50.8 0.1 1 1 1.4e-16 2.7e-13 50.1 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 AY701528_00023 - 180 2.7e-12 46.7 0.0 1 1 1.9e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 AY701528_00023 - 180 2e-09 37.8 1.3 1 1 1.2e-12 2.4e-09 37.5 1.3 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 AY701528_00023 - 180 0.0015 19.2 0.0 1 1 9.5e-07 0.0019 18.9 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 AY701528_00023 - 180 0.0019 18.3 0.0 1 1 1.9e-06 0.0038 17.3 0.0 8 58 80 130 50 132 0.86 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 AY701528_00023 - 180 0.011 15.8 0.0 1 1 2.2e-05 0.044 13.9 0.0 21 126 50 154 43 156 0.73 Acetyltransferase (GNAT) domain PanZ PF12568.8 128 AY701528_00023 - 180 0.031 14.0 0.0 1 1 2.2e-05 0.044 13.5 0.0 29 121 63 154 46 163 0.72 Acetyltransferase (GNAT) domain, PanZ FR47 PF08445.10 86 AY701528_00023 - 180 0.038 14.0 0.0 1 1 3.2e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein APH PF01636.23 240 AY701528_00024 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 AY701528_00024 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 AY701528_00024 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 AY701528_00024 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family Y1_Tnp PF01797.16 121 AY701528_00025 - 157 1.5e-37 128.4 1.5 1 1 1.1e-41 2e-37 128.0 1.5 2 121 13 133 12 133 0.94 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 69 AY701528_00026 - 412 4.6e-23 80.9 0.3 1 1 8.6e-26 9.6e-23 79.9 0.3 1 69 321 390 321 390 0.98 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 AY701528_00026 - 412 6.7e-13 48.9 2.3 1 2 2.8 3.1e+03 -1.7 0.8 52 87 37 69 23 95 0.68 Probable transposase OrfB_IS605 PF01385.19 120 AY701528_00026 - 412 6.7e-13 48.9 2.3 2 2 6e-16 6.7e-13 48.9 2.3 10 118 184 299 169 301 0.83 Probable transposase HTH_OrfB_IS605 PF12323.8 47 AY701528_00026 - 412 3.3e-09 36.1 2.5 1 1 6.5e-12 7.3e-09 35.0 2.5 1 43 1 44 1 48 0.94 Helix-turn-helix domain DUF4428 PF14471.6 51 AY701528_00026 - 412 0.012 15.6 0.4 1 1 4e-05 0.045 13.7 0.4 8 33 353 381 351 391 0.82 Domain of unknown function (DUF4428) Prok-RING_1 PF14446.6 54 AY701528_00026 - 412 0.018 15.0 0.5 1 1 2.9e-05 0.032 14.1 0.5 2 33 346 380 345 384 0.81 Prokaryotic RING finger family 1 Methyltr_RsmF_N PF17125.5 90 AY701528_00026 - 412 0.051 14.1 2.4 1 2 8.7e-05 0.098 13.2 0.1 7 78 64 135 60 138 0.78 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltr_RsmF_N PF17125.5 90 AY701528_00026 - 412 0.051 14.1 2.4 2 2 1.6 1.7e+03 -0.5 0.2 11 40 215 246 208 265 0.65 N-terminal domain of 16S rRNA methyltransferase RsmF Rpr2 PF04032.16 90 AY701528_00026 - 412 0.064 13.5 4.2 1 3 3.8 4.3e+03 -1.9 0.1 13 34 269 290 258 316 0.57 RNAse P Rpr2/Rpp21/SNM1 subunit domain Rpr2 PF04032.16 90 AY701528_00026 - 412 0.064 13.5 4.2 2 3 0.006 6.7 7.1 0.2 37 54 340 357 326 360 0.87 RNAse P Rpr2/Rpp21/SNM1 subunit domain Rpr2 PF04032.16 90 AY701528_00026 - 412 0.064 13.5 4.2 3 3 0.0094 11 6.4 0.1 42 67 366 389 357 397 0.79 RNAse P Rpr2/Rpp21/SNM1 subunit domain Zn-ribbon_8 PF09723.10 40 AY701528_00026 - 412 0.11 12.7 1.0 1 1 0.00026 0.29 11.3 1.0 8 40 351 381 329 381 0.87 Zinc ribbon domain C1_2 PF03107.16 47 AY701528_00026 - 412 0.13 12.6 1.1 1 1 0.00022 0.25 11.7 1.1 14 43 344 378 329 380 0.79 C1 domain Zn_Tnp_IS1595 PF12760.7 46 AY701528_00026 - 412 0.14 12.2 1.0 1 1 0.00023 0.26 11.3 1.0 20 45 350 375 345 376 0.90 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 23 AY701528_00026 - 412 0.2 11.4 2.0 1 2 0.0097 11 5.9 0.1 13 21 348 356 341 357 0.85 zinc-ribbon domain zinc_ribbon_2 PF13240.6 23 AY701528_00026 - 412 0.2 11.4 2.0 2 2 0.032 35 4.3 0.2 2 8 370 376 369 382 0.88 zinc-ribbon domain YhfH PF14149.6 37 AY701528_00026 - 412 0.3 11.1 4.1 1 2 0.0094 11 6.1 0.2 13 21 348 356 336 357 0.72 YhfH-like protein YhfH PF14149.6 37 AY701528_00026 - 412 0.3 11.1 4.1 2 2 0.018 20 5.3 0.4 16 24 370 378 369 383 0.90 YhfH-like protein Rubredoxin_2 PF18073.1 28 AY701528_00026 - 412 0.53 10.1 1.7 1 2 0.2 2.3e+02 1.6 0.1 3 8 351 356 350 361 0.80 Rubredoxin metal binding domain Rubredoxin_2 PF18073.1 28 AY701528_00026 - 412 0.53 10.1 1.7 2 2 0.0029 3.2 7.6 0.2 1 11 368 378 368 379 0.88 Rubredoxin metal binding domain A2L_zn_ribbon PF08792.10 33 AY701528_00026 - 412 1.2 8.9 5.1 1 1 0.0057 6.4 6.6 5.1 4 29 349 375 348 377 0.84 A2L zinc ribbon domain AMIN PF11741.8 97 AY701528_00026 - 412 1.9 8.7 8.2 1 2 0.0008 0.89 9.7 0.3 14 65 15 65 8 72 0.84 AMIN domain AMIN PF11741.8 97 AY701528_00026 - 412 1.9 8.7 8.2 2 2 0.23 2.6e+02 1.8 1.5 11 63 156 223 146 256 0.63 AMIN domain eIF-5_eIF-2B PF01873.17 117 AY701528_00026 - 412 2.6 7.9 7.7 1 2 0.43 4.8e+02 0.6 0.2 47 75 24 53 10 73 0.55 Domain found in IF2B/IF5 eIF-5_eIF-2B PF01873.17 117 AY701528_00026 - 412 2.6 7.9 7.7 2 2 0.00094 1.1 9.2 1.5 89 116 350 375 328 376 0.86 Domain found in IF2B/IF5 NPA PF16469.5 123 AY701528_00027 - 91 0.057 14.0 6.1 1 1 3.3e-06 0.06 13.9 6.1 17 103 3 89 1 91 0.87 Nematode polyprotein allergen ABA-1 DUF1272 PF06906.11 57 AY701528_00028 - 75 0.0094 16.0 4.2 1 1 1.8e-06 0.016 15.3 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) Papo_T_antigen PF02380.15 93 AY701528_00028 - 75 0.011 15.8 6.4 1 1 1.9e-06 0.017 15.2 6.4 51 73 44 65 28 69 0.86 T-antigen specific domain AAA_31 PF13614.6 177 AY701528_00029 - 31 7.9e-05 22.7 0.1 1 1 1.3e-08 7.9e-05 22.7 0.1 3 24 2 23 1 30 0.92 AAA domain CbiA PF01656.23 128 AY701528_00029 - 31 0.0032 17.5 0.0 1 1 5.6e-07 0.0033 17.5 0.0 1 21 3 23 3 26 0.92 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 246 AY701528_00029 - 31 0.037 13.5 0.1 1 1 6.4e-06 0.038 13.4 0.1 5 25 2 22 1 25 0.91 NUBPL iron-transfer P-loop NTPase Cas_DxTHG PF09455.10 359 AY701528_00030 - 153 0.045 13.3 3.0 1 2 0.074 3.3e+02 0.6 0.1 81 121 29 74 5 79 0.60 CRISPR-associated (Cas) DxTHG family Cas_DxTHG PF09455.10 359 AY701528_00030 - 153 0.045 13.3 3.0 2 2 1.7e-05 0.075 12.6 1.7 34 101 80 151 52 153 0.72 CRISPR-associated (Cas) DxTHG family adh_short PF00106.25 195 AY701528_00030 - 153 0.071 12.6 0.0 1 1 1.9e-05 0.084 12.3 0.0 17 81 57 124 49 151 0.88 short chain dehydrogenase Mur_ligase_C PF02875.21 91 AY701528_00030 - 153 0.078 13.2 0.0 1 1 2.9e-05 0.13 12.5 0.0 21 78 72 126 58 135 0.81 Mur ligase family, glutamate ligase domain Glycos_transf_2 PF00535.26 170 AY701528_00030 - 153 0.1 12.4 0.0 1 1 3e-05 0.13 12.0 0.0 2 53 67 118 66 142 0.80 Glycosyl transferase family 2 Eco57I PF07669.11 106 AY701528_00032 - 556 1.9e-05 25.1 0.2 1 1 6.6e-09 5.9e-05 23.5 0.2 3 103 372 472 370 475 0.78 Eco57I restriction-modification methylase MTS PF05175.14 169 AY701528_00032 - 556 0.0027 17.3 0.0 1 1 7.7e-07 0.0069 16.0 0.0 31 144 309 427 299 442 0.72 Methyltransferase small domain Acetyltransf_7 PF13508.7 76 AY714214_00002 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 AY714214_00002 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 AY714214_00003 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 AY714214_00003 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 AY714214_00004 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 AY714214_00004 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 AY714214_00004 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 AY714214_00004 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 AY714214_00004 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 AY714214_00004 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 AY714214_00004 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 AY714214_00004 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 AY714214_00004 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 AY714214_00004 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 AY714214_00004 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 AY714214_00005 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 AY714214_00005 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 AY714214_00005 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 AY714214_00005 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 AY714214_00005 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 AY714214_00007 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 AY714214_00007 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 AY714214_00008 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 AY714214_00008 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 AY714214_00008 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 AY714214_00008 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 AY714214_00008 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 AY714214_00009 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 AY714214_00009 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) UBA_6 PF18039.1 42 AY714214_00010 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 AY714214_00010 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 AY714214_00010 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 AY714214_00010 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 AY714214_00011 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 AY714214_00011 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 AY714214_00011 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 AY714214_00013 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 AY714214_00014 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 AY714214_00015 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 AY714214_00015 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 AY714214_00015 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 AY714214_00015 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 AY714214_00015 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 AY714214_00015 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 AY714214_00015 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 AY714214_00015 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 AY714214_00015 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 AY714214_00015 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 AY714214_00015 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 AY714214_00015 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 AY714214_00016 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 AY714214_00016 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 AY714214_00016 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 AY714214_00016 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 AY714214_00016 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 AY714214_00016 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 AY714214_00016 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 AY714214_00016 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 AY714214_00016 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 AY714214_00016 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 AY714214_00017 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 AY714214_00017 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 AY714214_00017 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 AY714214_00019 - 87 3.5e-13 49.6 6.7 1 1 4.5e-17 4e-13 49.4 6.7 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 AY714214_00019 - 87 0.17 11.8 4.4 1 1 2.6e-05 0.23 11.3 4.4 78 135 37 87 9 87 0.70 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 AY714214_00020 - 922 4.9e-50 170.5 0.5 1 1 1.9e-53 1.2e-49 169.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 AY714214_00020 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 AY714214_00020 - 922 0.048 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 AY714214_00021 - 188 2e-29 102.0 0.1 1 1 1.9e-33 3.3e-29 101.3 0.1 2 88 24 122 23 122 0.83 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 AY714214_00022 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 AY714214_00022 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 AY714214_00022 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 AY714214_00022 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 AY714214_00022 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 AY714214_00022 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 AY714214_00022 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 AY714214_00022 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 AY714214_00022 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 AY714214_00022 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 AY714214_00022 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 AY714214_00022 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 AY714214_00022 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 AY714214_00022 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 AY714214_00023 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 AY714214_00024 - 91 0.00046 19.9 6.9 1 2 5.3e-08 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 AY714214_00024 - 91 0.00046 19.9 6.9 2 2 0.014 1.3e+02 2.5 0.2 31 52 57 78 56 80 0.82 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 AY714214_00024 - 91 0.0053 17.3 1.0 1 1 6.9e-07 0.0062 17.1 1.0 21 87 9 81 1 85 0.90 FliG N-terminal domain T4SS PF07996.11 197 AY714214_00025 - 323 7.9e-29 101.5 13.4 1 1 4e-32 1e-28 101.1 13.4 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 AY714214_00025 - 323 0.0081 16.3 0.6 1 2 0.99 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 AY714214_00025 - 323 0.0081 16.3 0.6 2 2 1.2e-05 0.03 14.5 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 AY714214_00025 - 323 0.014 16.1 5.0 1 2 0.046 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 AY714214_00025 - 323 0.014 16.1 5.0 2 2 5.3e-06 0.014 16.1 5.0 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 AY714214_00025 - 323 0.043 14.5 0.8 1 2 2.2 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 AY714214_00025 - 323 0.043 14.5 0.8 2 2 1.7e-05 0.043 14.5 0.8 32 84 209 270 202 296 0.83 von Willebrand factor type A domain KNOX2 PF03791.13 48 AY714214_00025 - 323 0.07 12.6 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 AY714214_00025 - 323 0.07 12.6 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain THOC7 PF05615.13 132 AY714214_00025 - 323 1.2 9.4 11.3 1 2 0.00061 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 AY714214_00025 - 323 1.2 9.4 11.3 2 2 0.17 4.4e+02 1.1 6.3 16 71 231 294 202 315 0.50 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 AY714214_00025 - 323 3.5 7.1 7.2 1 2 0.19 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 AY714214_00025 - 323 3.5 7.1 7.2 2 2 0.00046 1.2 8.6 3.3 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein TrbL PF04610.14 215 AY714214_00026 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 AY714214_00026 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 AY714214_00026 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 AY714214_00026 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 AY714214_00026 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 AY714214_00027 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 AY714214_00027 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 AY714214_00028 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 AY714214_00028 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 AY714214_00029 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 AY714214_00029 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 AY714214_00029 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 AY714214_00030 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 AY714214_00030 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 AY714214_00031 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 AY714214_00031 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 AY714214_00031 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 AY714214_00031 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 AY714214_00031 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 AY714214_00031 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 AY714214_00031 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 AY714214_00031 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 AY714214_00031 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 AY714214_00031 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 AY714214_00031 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 AY714214_00031 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 AY714214_00031 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 AY714214_00031 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 AY714214_00031 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 AY714214_00031 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 AY714214_00031 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 AY714214_00031 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 AY714214_00031 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 AY714214_00031 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 AY714214_00031 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 AY714214_00031 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 AY714214_00031 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 AY714214_00031 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 AY714214_00031 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 AY714214_00031 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 AY714214_00031 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 AY714214_00031 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 AY714214_00031 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 AY714214_00031 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 AY714214_00031 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 AY714214_00031 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 AY714214_00032 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 AY714214_00032 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 AY714214_00032 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 AY714214_00032 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 AY714214_00032 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 AY714214_00033 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 AY714214_00033 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 AY714214_00033 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 AY714214_00033 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 AY714214_00033 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 AY714214_00034 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 AY714214_00035 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 AY714214_00035 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 AY714214_00035 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 AY714214_00035 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 AY714214_00035 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 AY714214_00035 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 AY714214_00037 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 AY714214_00037 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 AY714214_00038 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 AY714214_00038 - 730 5.6e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 AY714214_00038 - 730 5.6e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 AY714214_00038 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 AY714214_00038 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 AY714214_00038 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 AY714214_00038 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 AY714214_00038 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 AY714214_00038 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 AY714214_00038 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 AY714214_00038 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 AY714214_00038 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 AY714214_00038 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 AY714214_00038 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 AY714214_00038 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 AY714214_00038 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 AY714214_00038 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 AY714214_00038 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 AY714214_00038 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 AY714214_00038 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 AY714214_00038 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 AY714214_00038 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 AY714214_00038 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 AY714214_00038 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 AY714214_00038 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 AY714214_00038 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 AY714214_00038 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 AY714214_00038 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 AY714214_00038 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 AY714214_00038 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 AY714214_00038 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 AY714214_00038 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 AY714214_00038 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 AY714214_00038 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 AY714214_00039 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 AY714214_00039 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 AY714214_00041 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 AY714214_00041 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 AY714214_00041 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 AY714214_00041 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 AY714214_00041 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 AY714214_00041 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 AY714214_00041 - 639 0.00029 21.1 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 AY714214_00041 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 AY714214_00041 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 AY714214_00041 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 AY714214_00041 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 AY714214_00042 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 AY714214_00042 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 AY714214_00044 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 AY714214_00044 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 AY714214_00044 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain CtsR_C PF17727.1 72 AY714214_00045 - 116 0.039 14.1 0.2 1 2 0.00024 4.3 7.5 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 AY714214_00045 - 116 0.039 14.1 0.2 2 2 0.0022 40 4.4 0.0 28 48 74 94 71 105 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 AY714214_00046 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 AY714214_00046 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain DUF1516 PF07457.11 108 AY714214_00047 - 91 0.0042 17.3 0.4 1 1 8.2e-07 0.0049 17.0 0.4 39 87 7 53 1 69 0.77 Protein of unknown function (DUF1516) LysE PF01810.18 193 AY714214_00047 - 91 0.0049 16.4 0.1 1 1 9.5e-07 0.0057 16.1 0.1 36 93 5 62 3 80 0.88 LysE type translocator DUF2873 PF11395.8 43 AY714214_00047 - 91 1 9.3 0.1 1 3 0.00017 1 9.3 0.1 1 20 1 20 1 23 0.92 Protein of unknown function (DUF2873) DUF2873 PF11395.8 43 AY714214_00047 - 91 1 9.3 0.1 2 3 0.16 9.8e+02 -0.3 0.4 14 27 31 41 27 48 0.59 Protein of unknown function (DUF2873) DUF2873 PF11395.8 43 AY714214_00047 - 91 1 9.3 0.1 3 3 1.7 1e+04 -3.5 7.8 8 19 76 87 70 89 0.84 Protein of unknown function (DUF2873) S1_2 PF13509.6 61 AY714214_00048 - 89 0.093 12.8 0.5 1 2 4.7e-05 0.85 9.7 0.1 5 37 10 44 8 54 0.86 S1 domain S1_2 PF13509.6 61 AY714214_00048 - 89 0.093 12.8 0.5 2 2 0.0067 1.2e+02 2.8 0.1 11 34 43 68 39 79 0.78 S1 domain DUF4044 PF13253.6 33 AY714214_00049 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 AY714214_00049 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 AY714214_00049 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 AY714214_00049 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 AY714214_00049 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 AY714214_00049 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 AY714214_00050 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 AY714214_00050 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 AY714214_00051 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 AY714214_00051 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 AY714214_00051 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 AY714214_00051 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 AY714214_00051 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 AY714214_00051 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 AY714214_00052 - 88 5.4e-07 29.9 1.0 1 1 3.3e-11 5.9e-07 29.8 1.0 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG PDDEXK_9 PF08011.11 105 AY714214_00053 - 159 0.017 15.0 0.2 1 1 1.8e-06 0.032 14.1 0.2 11 77 38 106 34 128 0.82 PD-(D/E)XK nuclease superfamily DUF5445 PF17520.2 52 AY714214_00054 - 77 1 9.2 12.2 1 1 7.3e-05 1.3 8.9 11.2 7 36 43 71 41 74 0.88 Family of unknown function (DUF5445) DUF2362 PF10154.9 501 AY730723_00001 - 369 0.00027 20.0 30.9 1 2 3 1.8e+04 -8.8 16.2 105 234 2 133 1 139 0.48 Uncharacterized conserved protein (DUF2362) DUF2362 PF10154.9 501 AY730723_00001 - 369 0.00027 20.0 30.9 2 2 4.5e-08 0.00027 20.0 30.9 22 221 139 361 136 368 0.77 Uncharacterized conserved protein (DUF2362) ORC4_C PF14629.6 219 AY730723_00001 - 369 0.0033 16.8 1.8 1 3 0.58 3.5e+03 -2.9 0.7 23 49 13 42 2 67 0.57 Origin recognition complex (ORC) subunit 4 C-terminus ORC4_C PF14629.6 219 AY730723_00001 - 369 0.0033 16.8 1.8 2 3 0.48 2.9e+03 -2.6 0.0 44 130 83 102 69 113 0.62 Origin recognition complex (ORC) subunit 4 C-terminus ORC4_C PF14629.6 219 AY730723_00001 - 369 0.0033 16.8 1.8 3 3 5.5e-07 0.0033 16.8 1.8 22 62 187 238 160 276 0.81 Origin recognition complex (ORC) subunit 4 C-terminus ApoO PF09769.9 130 AY730723_00001 - 369 1.4 8.9 14.2 1 4 1.3 8e+03 -3.3 0.0 108 123 75 90 71 92 0.73 Apolipoprotein O ApoO PF09769.9 130 AY730723_00001 - 369 1.4 8.9 14.2 2 4 0.0016 9.7 6.2 2.4 11 63 137 217 103 227 0.81 Apolipoprotein O ApoO PF09769.9 130 AY730723_00001 - 369 1.4 8.9 14.2 3 4 0.0018 11 6.0 0.2 9 65 250 308 242 313 0.87 Apolipoprotein O ApoO PF09769.9 130 AY730723_00001 - 369 1.4 8.9 14.2 4 4 0.039 2.3e+02 1.7 0.2 13 52 314 353 310 361 0.63 Apolipoprotein O LysE PF01810.18 193 CM007863_00001 - 72 5.6e-05 22.7 0.0 1 1 2.2e-08 6.7e-05 22.4 0.0 36 94 5 63 3 70 0.90 LysE type translocator DUF1516 PF07457.11 108 CM007863_00001 - 72 0.002 18.3 0.3 1 1 7.1e-07 0.0021 18.2 0.3 39 83 7 49 1 61 0.82 Protein of unknown function (DUF1516) TerC PF03741.16 181 CM007863_00001 - 72 0.041 13.6 0.3 1 1 1.6e-05 0.047 13.4 0.3 39 90 8 60 3 70 0.73 Integral membrane protein TerC family DUF5305 PF17231.2 219 CM007863_00001 - 72 0.077 12.4 0.6 1 2 0.24 7.2e+02 -0.6 0.0 116 136 6 26 2 29 0.75 Family of unknown function (DUF5305) DUF5305 PF17231.2 219 CM007863_00001 - 72 0.077 12.4 0.6 2 2 3.4e-05 0.1 12.0 0.2 114 157 25 69 19 72 0.76 Family of unknown function (DUF5305) Saf_2TM PF18303.1 152 CM007863_00001 - 72 0.11 12.1 0.8 1 2 0.3 9.1e+02 -0.6 0.0 65 82 5 22 2 29 0.49 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CM007863_00001 - 72 0.11 12.1 0.8 2 2 4.5e-05 0.13 11.8 0.3 61 99 22 62 15 67 0.72 SAVED-fused 2TM effector domain PetL PF05115.14 31 CM007863_00001 - 72 3.4 7.7 9.7 1 2 0.011 33 4.6 1.8 10 29 6 25 4 25 0.84 Cytochrome B6-F complex subunit VI (PetL) PetL PF05115.14 31 CM007863_00001 - 72 3.4 7.7 9.7 2 2 0.0013 4 7.5 1.2 8 25 28 44 27 50 0.83 Cytochrome B6-F complex subunit VI (PetL) Flp1_like PF16982.5 49 CM007863_00002 - 132 0.015 14.7 2.9 1 3 1.7e-06 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CM007863_00002 - 132 0.015 14.7 2.9 2 3 1.2 1e+04 -4.0 0.3 16 22 67 73 66 76 0.49 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CM007863_00002 - 132 0.015 14.7 2.9 3 3 0.91 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain BRI3BP PF14965.6 180 CM007863_00002 - 132 0.26 10.8 3.9 1 1 3.1e-05 0.28 10.7 3.5 59 106 51 101 32 120 0.81 Negative regulator of p53/TP53 YopX PF09643.10 131 CM007863_00004 - 148 1.9e-14 53.8 7.2 1 1 5.2e-17 4.7e-13 49.3 7.2 28 131 30 142 7 142 0.59 YopX protein RE_ApaLI PF09499.10 189 CM007863_00004 - 148 0.0081 15.9 0.6 1 1 9.3e-07 0.0083 15.9 0.6 48 117 58 129 21 148 0.79 ApaLI-like restriction endonuclease DUF2583 PF10762.9 88 CM007863_00006 - 117 0.67 10.4 3.8 1 2 0.00097 17 5.9 0.8 15 58 3 46 1 53 0.84 Protein of unknown function (DUF2583) DUF2583 PF10762.9 88 CM007863_00006 - 117 0.67 10.4 3.8 2 2 0.00084 15 6.1 0.7 14 58 48 98 43 102 0.75 Protein of unknown function (DUF2583) Topoisom_bac PF01131.20 413 CM007863_00009 - 730 3.9e-97 325.9 7.9 1 1 4.8e-100 5.4e-97 325.4 7.9 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CM007863_00009 - 730 1.9e-12 47.3 0.4 1 2 9.2e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CM007863_00009 - 730 1.9e-12 47.3 0.4 2 2 3.9 4.4e+03 -2.0 0.0 38 56 537 556 489 567 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 CM007863_00009 - 730 1.6e-08 34.1 15.1 1 2 3.7e-09 4.1e-06 26.5 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CM007863_00009 - 730 1.6e-08 34.1 15.1 2 2 8.7e-05 0.098 12.5 2.4 3 27 683 710 681 719 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CM007863_00009 - 730 1e-05 25.7 2.3 1 3 8.3 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CM007863_00009 - 730 1e-05 25.7 2.3 2 3 0.00037 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CM007863_00009 - 730 1e-05 25.7 2.3 3 3 3.8e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CM007863_00009 - 730 0.012 15.7 1.3 1 2 0.0077 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CM007863_00009 - 730 0.012 15.7 1.3 2 2 0.0045 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CM007863_00009 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CM007863_00009 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 CM007863_00009 - 730 0.055 14.3 2.8 1 2 0.007 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CM007863_00009 - 730 0.055 14.3 2.8 2 2 0.021 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CM007863_00009 - 730 0.087 12.3 2.7 1 2 0.003 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CM007863_00009 - 730 0.087 12.3 2.7 2 2 0.02 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 CM007863_00009 - 730 0.089 12.7 0.0 1 1 0.00027 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 CM007863_00009 - 730 0.089 13.1 4.5 1 2 0.00079 0.88 9.9 3.7 5 64 627 689 623 696 0.71 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CM007863_00009 - 730 0.089 13.1 4.5 2 2 0.0023 2.6 8.4 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 CM007863_00009 - 730 0.44 10.8 3.3 1 3 1.7 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CM007863_00009 - 730 0.44 10.8 3.3 2 3 5 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CM007863_00009 - 730 0.44 10.8 3.3 3 3 0.00076 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 CM007863_00009 - 730 0.55 9.9 3.0 1 2 0.03 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 CM007863_00009 - 730 0.55 9.9 3.0 2 2 0.011 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 CM007863_00009 - 730 0.63 10.0 3.8 1 2 0.0041 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CM007863_00009 - 730 0.63 10.0 3.8 2 2 0.13 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 CM007863_00009 - 730 0.73 9.9 3.8 1 2 0.1 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 CM007863_00009 - 730 0.73 9.9 3.8 2 2 0.0039 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 CM007863_00009 - 730 7 6.5 8.0 1 2 0.046 51 3.7 2.5 15 31 629 645 627 660 0.79 PADR1 (NUC008) domain PADR1 PF08063.12 53 CM007863_00009 - 730 7 6.5 8.0 2 2 0.016 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 CM007863_00009 - 730 8.4 6.4 6.5 1 2 0.01 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 CM007863_00009 - 730 8.4 6.4 6.5 2 2 0.088 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 CM007863_00010 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CM007863_00010 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 CM007863_00012 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 CM007863_00012 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 CM007863_00012 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 CM007863_00012 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CM007863_00012 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CM007863_00012 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 CM007863_00013 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 CM007863_00014 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 CM007863_00014 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 CM007863_00014 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CM007863_00014 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CM007863_00014 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 CM007863_00015 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CM007863_00015 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CM007863_00015 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CM007863_00015 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CM007863_00015 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 CM007863_00016 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CM007863_00016 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CM007863_00016 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CM007863_00016 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CM007863_00016 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CM007863_00016 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CM007863_00016 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CM007863_00016 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CM007863_00016 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CM007863_00016 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CM007863_00016 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CM007863_00016 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CM007863_00016 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CM007863_00016 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CM007863_00016 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CM007863_00016 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CM007863_00016 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CM007863_00016 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CM007863_00016 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CM007863_00016 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CM007863_00016 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CM007863_00016 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CM007863_00016 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CM007863_00016 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CM007863_00016 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CM007863_00016 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CM007863_00016 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 CM007863_00016 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CM007863_00016 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CM007863_00016 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CM007863_00016 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 CM007863_00016 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 CM007863_00017 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CM007863_00017 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 CM007863_00018 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CM007863_00018 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CM007863_00018 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 CM007863_00019 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CM007863_00019 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 CM007863_00020 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CM007863_00020 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 CM007863_00021 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CM007863_00021 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CM007863_00021 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CM007863_00021 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 CM007863_00021 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 CM007863_00022 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 CM007863_00022 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CM007863_00022 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CM007863_00022 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CM007863_00022 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 CM007863_00022 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 CM007863_00022 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 CM007863_00022 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 CM007863_00022 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 CM007863_00022 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 CM007863_00022 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 CM007863_00022 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 CM007863_00022 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 CM007863_00022 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 CM007863_00022 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain IF2_N PF04760.15 54 CM007863_00023 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CM007863_00023 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CM007863_00023 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CM007863_00023 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CM007863_00023 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CM007863_00023 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CM007863_00023 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 CM007863_00024 - 141 1.5e-25 89.2 0.1 1 1 1e-29 1.8e-25 88.9 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3895 PF13034.6 76 CM007863_00025 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 CM007863_00025 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) Phage_pRha PF09669.10 88 CM007863_00026 - 185 6.7e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 CM007863_00026 - 185 0.0015 18.6 0.0 1 1 8.6e-07 0.0031 17.6 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 CM007863_00026 - 185 0.026 14.1 0.3 1 2 0.05 1.8e+02 1.6 0.1 80 118 33 71 5 80 0.74 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 CM007863_00026 - 185 0.026 14.1 0.3 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 CM007863_00026 - 185 0.081 12.9 0.1 1 1 6.1e-05 0.22 11.5 0.0 77 131 80 130 69 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 CM007863_00026 - 185 0.83 9.7 7.1 1 3 0.019 69 3.6 0.1 40 53 12 25 3 29 0.83 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CM007863_00026 - 185 0.83 9.7 7.1 2 3 0.0022 7.9 6.6 0.9 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CM007863_00026 - 185 0.83 9.7 7.1 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 CagE_TrbE_VirB PF03135.14 206 CM007863_00027 - 922 4.1e-51 174.0 0.4 1 1 2e-54 9.1e-51 172.9 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CM007863_00027 - 922 7.7e-21 74.1 0.9 1 1 3.1e-24 1.4e-20 73.3 0.9 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 CM007863_00027 - 922 2.9e-07 29.8 0.9 1 1 1.5e-10 6.6e-07 28.6 0.9 23 321 547 846 542 860 0.73 AAA-like domain DUF87 PF01935.17 227 CM007863_00027 - 922 0.013 15.6 3.4 1 5 0.67 3e+03 -1.9 0.2 134 201 188 252 133 281 0.47 Helicase HerA, central domain DUF87 PF01935.17 227 CM007863_00027 - 922 0.013 15.6 3.4 2 5 0.9 4e+03 -2.4 0.0 87 124 263 298 243 301 0.77 Helicase HerA, central domain DUF87 PF01935.17 227 CM007863_00027 - 922 0.013 15.6 3.4 3 5 0.00034 1.5 8.8 0.0 26 49 548 571 539 598 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 CM007863_00027 - 922 0.013 15.6 3.4 4 5 0.0067 30 4.6 0.1 100 163 638 700 610 731 0.79 Helicase HerA, central domain DUF87 PF01935.17 227 CM007863_00027 - 922 0.013 15.6 3.4 5 5 0.36 1.6e+03 -1.1 0.0 43 108 751 811 747 910 0.65 Helicase HerA, central domain TrbC PF04956.13 99 CM007863_00028 - 87 6.2e-13 48.8 6.8 1 1 7.4e-17 6.6e-13 48.7 6.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 CM007863_00028 - 87 0.61 9.9 6.3 1 1 0.00015 1.3 8.9 6.2 108 135 60 87 10 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 CM007863_00030 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CM007863_00030 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 Resolvase PF00239.21 146 CM007863_00031 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 CM007863_00031 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 CM007863_00031 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 CM007863_00031 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 CM007863_00031 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CM007863_00031 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CM007863_00031 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain AAA_25 PF13481.6 194 CM007863_00032 - 597 5.4e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 CM007863_00032 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CM007863_00032 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CM007863_00032 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CM007863_00032 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 CM007863_00032 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 CM007863_00032 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 CM007863_00032 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CM007863_00032 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 CM007863_00032 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 CM007863_00032 - 597 0.37 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CM007863_00032 - 597 0.37 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CM007863_00032 - 597 0.37 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) HicA_toxin PF07927.12 58 CM007863_00033 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 CM007863_00034 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 CM007863_00036 - 92 0.0052 16.8 2.6 1 1 7.7e-07 0.0069 16.4 2.6 34 88 27 83 25 86 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2633 PF11119.8 57 CM007863_00036 - 92 0.56 10.1 4.1 1 2 0.44 4e+03 -2.2 0.0 8 15 7 14 5 18 0.76 Protein of unknown function (DUF2633) DUF2633 PF11119.8 57 CM007863_00036 - 92 0.56 10.1 4.1 2 2 0.00023 2 8.4 4.2 11 33 34 57 27 60 0.83 Protein of unknown function (DUF2633) UBA_6 PF18039.1 42 CM007863_00037 - 35 0.027 14.4 0.0 1 1 4.8e-06 0.028 14.3 0.0 4 28 2 26 1 31 0.92 UBA-like domain DUF3606 PF12244.8 54 CM007863_00037 - 35 0.045 13.7 0.0 1 1 7.6e-06 0.045 13.7 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 CM007863_00037 - 35 0.068 13.6 0.0 1 1 1.1e-05 0.068 13.6 0.0 1 22 1 22 1 33 0.95 Cell division protein ZapB DUF4223 PF13978.6 54 CM007863_00038 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 CM007863_00038 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) Toprim_3 PF13362.6 95 CM007863_00039 - 408 2.1e-08 34.4 0.0 1 1 6.4e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Toprim_4 PF13662.6 89 CM007863_00039 - 408 0.14 12.7 0.1 1 1 5.1e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 CM007863_00039 - 408 0.19 12.3 4.2 1 2 0.023 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CM007863_00039 - 408 0.19 12.3 4.2 2 2 0.00023 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF2004 PF09406.10 106 CM007863_00040 - 219 0.12 12.7 3.0 1 2 3.5e-05 0.62 10.4 1.0 9 78 46 117 40 128 0.90 Protein of unknown function (DUF2004) DUF2004 PF09406.10 106 CM007863_00040 - 219 0.12 12.7 3.0 2 2 0.014 2.4e+02 2.1 0.0 36 78 164 209 131 213 0.86 Protein of unknown function (DUF2004) Sds3 PF08598.11 218 CM007863_00042 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 CM007863_00042 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 CM007863_00042 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 CM007863_00042 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 CM007863_00042 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 CM007863_00043 - 183 0.00011 22.1 5.7 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CM007863_00043 - 183 0.00011 22.1 5.7 2 3 0.49 1.8e+03 -0.9 0.0 21 36 77 92 71 97 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CM007863_00043 - 183 0.00011 22.1 5.7 3 3 1.9e-05 0.067 13.2 0.7 15 62 107 156 95 161 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CM007863_00043 - 183 0.058 13.5 1.9 1 1 2.4e-05 0.087 12.9 1.4 56 131 20 103 9 116 0.67 Stage III sporulation protein AB (spore_III_AB) DndE PF08870.11 112 CM007863_00043 - 183 0.31 11.3 5.7 1 2 0.075 2.7e+02 1.9 0.1 2 22 9 29 8 37 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CM007863_00043 - 183 0.31 11.3 5.7 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 CM007863_00043 - 183 0.53 10.6 5.9 1 2 0.0007 2.5 8.5 2.0 14 90 6 82 3 98 0.74 NLRC4 helical domain NLRC4_HD PF17889.1 107 CM007863_00043 - 183 0.53 10.6 5.9 2 2 0.017 60 4.0 0.1 45 88 102 143 96 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 CM007863_00043 - 183 2 8.5 7.9 1 3 0.29 1e+03 -0.2 0.1 40 55 12 27 4 56 0.73 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CM007863_00043 - 183 2 8.5 7.9 2 3 0.061 2.2e+02 2.0 0.5 10 46 55 91 50 97 0.85 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CM007863_00043 - 183 2 8.5 7.9 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 Relaxase PF03432.14 242 CM007863_00044 - 462 4.3e-09 36.3 8.2 1 2 2.4e-13 4.3e-09 36.3 8.2 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CM007863_00044 - 462 4.3e-09 36.3 8.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain DUF2768 PF10966.8 58 CM007863_00045 - 235 0.053 14.0 0.6 1 1 5.9e-06 0.11 13.0 0.6 23 52 204 233 202 234 0.91 Protein of unknown function (DUF2768) SNF2_N PF00176.23 350 CM007863_00046 - 1932 3e-16 59.1 1.8 1 3 1.4e-19 5.1e-16 58.3 0.1 58 245 1018 1272 957 1313 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CM007863_00046 - 1932 3e-16 59.1 1.8 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CM007863_00046 - 1932 3e-16 59.1 1.8 3 3 0.85 3.1e+03 -3.4 0.0 171 200 1877 1907 1856 1920 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 CM007863_00046 - 1932 7.5e-08 32.6 8.9 1 2 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CM007863_00046 - 1932 7.5e-08 32.6 8.9 2 2 0.35 1.2e+03 -0.7 5.5 29 122 1793 1909 1747 1930 0.68 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CM007863_00046 - 1932 9.6e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CM007863_00046 - 1932 9.6e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CM007863_00046 - 1932 8.1e-06 25.7 2.5 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 CM007863_00046 - 1932 8.1e-06 25.7 2.5 2 2 0.068 2.4e+02 1.4 0.1 119 151 1882 1916 1830 1929 0.69 DEAD/DEAH box helicase Eco57I PF07669.11 106 CM007863_00046 - 1932 2.6e-05 24.7 0.7 1 2 6.5e-08 0.00023 21.6 0.2 3 103 371 471 369 474 0.81 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CM007863_00046 - 1932 2.6e-05 24.7 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 CM007863_00047 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 CM007863_00047 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal AAA_31 PF13614.6 177 CM007863_00048 - 186 5.3e-05 23.2 0.6 1 2 2.2e-07 0.001 19.1 0.1 3 26 2 25 1 34 0.91 AAA domain AAA_31 PF13614.6 177 CM007863_00048 - 186 5.3e-05 23.2 0.6 2 2 0.022 98 2.8 0.0 116 156 52 92 24 105 0.69 AAA domain CbiA PF01656.23 128 CM007863_00048 - 186 0.0012 18.9 0.5 1 1 1.8e-06 0.0079 16.3 0.5 1 25 3 27 3 185 0.69 CobQ/CobB/MinD/ParA nucleotide binding domain Mur_ligase_C PF02875.21 91 CM007863_00048 - 186 0.062 13.6 0.0 1 1 2.4e-05 0.11 12.8 0.0 21 78 84 138 70 147 0.84 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CM007863_00048 - 186 0.18 11.3 0.0 1 1 5.8e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 CM007863_00049 - 88 0.00028 21.0 1.6 1 1 5.9e-08 0.00035 20.7 1.6 51 74 44 66 28 83 0.87 T-antigen specific domain CEBP_ZZ PF16366.5 61 CM007863_00049 - 88 0.022 15.0 2.6 1 1 5e-06 0.03 14.6 2.6 13 53 28 66 25 74 0.79 Cytoplasmic polyadenylation element-binding protein ZZ domain DUF1272 PF06906.11 57 CM007863_00049 - 88 0.049 13.7 3.8 1 1 1.2e-05 0.074 13.1 3.8 8 39 29 58 26 65 0.90 Protein of unknown function (DUF1272) Lip_prot_lig_C PF10437.9 85 CM007865_00001 - 126 0.048 13.6 3.7 1 2 0.013 2.3e+02 1.9 0.0 56 83 26 51 12 53 0.77 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 CM007865_00001 - 126 0.048 13.6 3.7 2 2 6.8e-06 0.12 12.4 3.0 2 83 39 123 38 124 0.85 Bacterial lipoate protein ligase C-terminus EptA_B_N PF08019.12 152 CM007865_00003 - 135 0.12 12.3 10.8 1 2 8.8e-06 0.053 13.4 1.6 98 144 6 52 2 59 0.86 Phosphoethanolamine transferase EptA/EptB EptA_B_N PF08019.12 152 CM007865_00003 - 135 0.12 12.3 10.8 2 2 0.0055 33 4.3 1.6 70 115 75 120 70 134 0.65 Phosphoethanolamine transferase EptA/EptB FeoB_associated PF12669.7 44 CM007865_00003 - 135 1.9 9.0 0.0 1 3 0.13 7.6e+02 0.6 1.7 9 17 9 18 7 28 0.50 FeoB-associated Cys-rich membrane protein FeoB_associated PF12669.7 44 CM007865_00003 - 135 1.9 9.0 0.0 2 3 0.39 2.3e+03 -0.9 0.1 12 23 57 68 54 73 0.66 FeoB-associated Cys-rich membrane protein FeoB_associated PF12669.7 44 CM007865_00003 - 135 1.9 9.0 0.0 3 3 0.00031 1.9 9.0 0.0 2 26 106 132 105 134 0.81 FeoB-associated Cys-rich membrane protein DUF2070 PF09843.9 564 CM007865_00003 - 135 7.9 4.6 18.3 1 1 0.0016 9.6 4.4 18.3 73 163 11 117 2 128 0.61 Predicted membrane protein (DUF2070) Topoisom_bac PF01131.20 413 CM007865_00006 - 730 5.8e-97 325.3 7.7 1 1 7.6e-100 8e-97 324.8 7.7 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CM007865_00006 - 730 1.8e-12 47.4 0.4 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CM007865_00006 - 730 1.8e-12 47.4 0.4 2 2 4.1 4.4e+03 -2.0 0.0 38 56 537 556 489 567 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 CM007865_00006 - 730 1.4e-08 34.4 14.8 1 2 3.9e-09 4.1e-06 26.5 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CM007865_00006 - 730 1.4e-08 34.4 14.8 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CM007865_00006 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CM007865_00006 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CM007865_00006 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CM007865_00006 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CM007865_00006 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CM007865_00006 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CM007865_00006 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 CM007865_00006 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CM007865_00006 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CM007865_00006 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CM007865_00006 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 CM007865_00006 - 730 0.088 12.7 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 CM007865_00006 - 730 0.089 13.1 4.5 1 2 0.00084 0.88 9.9 3.7 5 64 627 689 623 696 0.71 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CM007865_00006 - 730 0.089 13.1 4.5 2 2 0.0025 2.6 8.4 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain FLYWCH PF04500.16 62 CM007865_00006 - 730 0.14 12.3 3.1 1 2 0.19 2e+02 2.2 0.0 25 42 644 660 636 670 0.79 FLYWCH zinc finger domain FLYWCH PF04500.16 62 CM007865_00006 - 730 0.14 12.3 3.1 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain HTH_34 PF13601.6 80 CM007865_00006 - 730 0.47 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CM007865_00006 - 730 0.47 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CM007865_00006 - 730 0.47 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 CM007865_00006 - 730 0.55 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 CM007865_00006 - 730 0.55 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 CM007865_00006 - 730 0.63 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CM007865_00006 - 730 0.63 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 CM007865_00006 - 730 0.73 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 CM007865_00006 - 730 0.73 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 CM007865_00006 - 730 7 6.5 8.0 1 2 0.049 51 3.7 2.5 15 31 629 645 627 660 0.79 PADR1 (NUC008) domain PADR1 PF08063.12 53 CM007865_00006 - 730 7 6.5 8.0 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 CM007865_00006 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 CM007865_00006 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 CM007865_00007 - 206 0.055 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CM007865_00007 - 206 0.055 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 CM007865_00008 - 265 0.039 13.8 0.5 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 CM007865_00008 - 265 0.039 13.8 0.5 2 2 6.5e-06 0.039 13.8 0.5 96 155 83 147 69 149 0.85 PRELI-like family DUF2304 PF10066.9 106 CM007865_00008 - 265 0.1 12.8 0.9 1 1 4e-05 0.24 11.6 0.9 42 101 167 226 165 231 0.94 Uncharacterized conserved protein (DUF2304) Rsd_AlgQ PF04353.13 150 CM007865_00008 - 265 1.3 8.9 6.1 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CM007865_00008 - 265 1.3 8.9 6.1 2 3 7.4e-05 0.44 10.5 1.9 42 108 120 185 89 189 0.81 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CM007865_00008 - 265 1.3 8.9 6.1 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 CM007865_00009 - 254 2.6e-35 121.7 1.4 1 1 2e-39 3.6e-35 121.2 1.4 1 154 24 192 24 194 0.86 TrbM Cag12 PF13117.6 97 CM007865_00010 - 145 5.5e-17 62.1 0.4 1 1 1.2e-20 6.9e-17 61.8 0.4 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 CM007865_00010 - 145 0.068 13.0 0.2 1 1 3.3e-05 0.19 11.5 0.2 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CM007865_00010 - 145 3.9 7.4 6.0 1 2 0.00075 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CM007865_00010 - 145 3.9 7.4 6.0 2 2 0.16 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 CM007865_00011 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CM007865_00011 - 603 9.9e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CM007865_00011 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CM007865_00011 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CM007865_00011 - 603 0.046 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 CM007865_00012 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CM007865_00012 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CM007865_00012 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CM007865_00012 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CM007865_00012 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CM007865_00012 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CM007865_00012 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CM007865_00012 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CM007865_00012 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CM007865_00012 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CM007865_00012 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CM007865_00012 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CM007865_00012 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CM007865_00012 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CM007865_00012 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CM007865_00012 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CM007865_00012 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CM007865_00012 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CM007865_00012 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CM007865_00012 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CM007865_00012 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CM007865_00012 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CM007865_00012 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CM007865_00012 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CM007865_00012 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CM007865_00012 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CM007865_00012 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 CM007865_00012 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CM007865_00012 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CM007865_00012 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CM007865_00012 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 CM007865_00012 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 CM007865_00013 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CM007865_00013 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 CM007865_00014 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CM007865_00014 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CM007865_00014 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 CM007865_00015 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CM007865_00015 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 CM007865_00016 - 72 0.035 13.0 0.0 1 1 3.9e-06 0.035 13.0 0.0 3 24 20 40 18 68 0.82 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CM007865_00016 - 72 1.5 8.6 5.2 1 1 0.00029 2.6 7.9 5.2 8 20 22 34 22 35 0.94 Photosystem II reaction centre T protein TrbL PF04610.14 215 CM007865_00017 - 332 8.7e-31 107.4 31.2 1 2 4.8e-35 8.7e-31 107.4 31.2 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CM007865_00017 - 332 8.7e-31 107.4 31.2 2 2 0.27 4.8e+03 -2.9 0.1 60 71 288 299 266 328 0.51 TrbL/VirB6 plasmid conjugal transfer protein T4SS PF07996.11 197 CM007865_00018 - 323 2.2e-28 100.0 14.0 1 1 1.1e-31 2.9e-28 99.6 14.0 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 CM007865_00018 - 323 0.0037 17.4 0.4 1 2 0.84 2.1e+03 -1.1 0.0 30 54 134 158 122 180 0.76 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CM007865_00018 - 323 0.0037 17.4 0.4 2 2 5.9e-06 0.015 15.4 0.1 18 82 195 259 186 263 0.92 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CM007865_00018 - 323 0.0089 16.7 5.2 1 2 0.048 1.2e+02 3.3 0.5 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CM007865_00018 - 323 0.0089 16.7 5.2 2 2 3.5e-06 0.0089 16.7 5.2 47 128 219 318 203 322 0.76 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 CM007865_00018 - 323 0.064 12.8 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 CM007865_00018 - 323 0.064 12.8 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 CM007865_00018 - 323 0.07 13.8 0.9 1 2 2 5e+03 -1.8 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 CM007865_00018 - 323 0.07 13.8 0.9 2 2 2.7e-05 0.07 13.8 0.9 32 84 209 270 203 295 0.83 von Willebrand factor type A domain DHR10 PF18595.1 117 CM007865_00018 - 323 5.7 7.0 14.8 1 2 0.1 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 CM007865_00018 - 323 5.7 7.0 14.8 2 2 0.00026 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain THOC7 PF05615.13 132 CM007865_00018 - 323 5.8 7.2 12.9 1 2 0.00067 1.7 8.9 0.3 57 107 101 151 97 175 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 CM007865_00018 - 323 5.8 7.2 12.9 2 2 0.28 7.2e+02 0.4 6.6 15 71 230 294 215 315 0.59 Tho complex subunit 7 IF2_N PF04760.15 54 CM007865_00019 - 91 6.5e-05 22.7 5.8 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CM007865_00019 - 91 6.5e-05 22.7 5.8 2 2 0.0075 34 4.4 0.1 31 53 57 79 56 80 0.87 Translation initiation factor IF-2, N-terminal region HTH_16 PF12645.7 65 CM007865_00019 - 91 0.013 15.5 1.9 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CM007865_00019 - 91 0.013 15.5 1.9 2 2 2.8e-05 0.13 12.4 0.3 15 54 44 82 40 85 0.87 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CM007865_00019 - 91 0.029 15.1 0.5 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CM007865_00019 - 91 0.029 15.1 0.5 2 2 0.014 63 4.4 0.0 29 51 69 91 64 91 0.83 Rv0623-like transcription factor FliG_N PF14842.6 104 CM007865_00019 - 91 0.039 14.5 1.0 1 1 1e-05 0.046 14.3 1.0 21 86 9 80 1 85 0.89 FliG N-terminal domain SSB PF00436.25 104 CM007865_00020 - 140 1.4e-25 89.3 0.1 1 1 1e-29 1.8e-25 89.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3895 PF13034.6 76 CM007865_00021 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 CM007865_00021 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) Phage_pRha PF09669.10 88 CM007865_00022 - 185 6.9e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 CM007865_00022 - 185 0.0016 18.5 0.0 1 1 9.1e-07 0.0033 17.5 0.0 23 90 27 94 23 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 CM007865_00022 - 185 0.031 13.9 0.1 1 2 0.063 2.3e+02 1.3 0.0 80 118 33 71 5 80 0.78 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 CM007865_00022 - 185 0.031 13.9 0.1 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 CM007865_00022 - 185 0.09 12.8 0.0 1 1 5.5e-05 0.2 11.7 0.0 77 131 80 130 62 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 CM007865_00022 - 185 0.56 10.3 5.4 1 3 0.048 1.7e+02 2.3 0.0 42 53 14 25 3 28 0.78 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CM007865_00022 - 185 0.56 10.3 5.4 2 3 0.0021 7.7 6.6 0.8 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CM007865_00022 - 185 0.56 10.3 5.4 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 CagE_TrbE_VirB PF03135.14 206 CM007865_00023 - 922 3.6e-49 167.7 0.3 1 1 2e-52 9e-49 166.4 0.3 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CM007865_00023 - 922 7e-21 74.3 1.2 1 1 2.8e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 CM007865_00023 - 922 3.8e-07 29.4 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 CM007865_00023 - 922 0.024 14.7 4.5 1 5 0.52 2.3e+03 -1.6 0.1 117 202 161 253 129 284 0.48 Helicase HerA, central domain DUF87 PF01935.17 227 CM007865_00023 - 922 0.024 14.7 4.5 2 5 0.89 4e+03 -2.3 0.0 87 124 263 298 243 301 0.77 Helicase HerA, central domain DUF87 PF01935.17 227 CM007865_00023 - 922 0.024 14.7 4.5 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 CM007865_00023 - 922 0.024 14.7 4.5 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 CM007865_00023 - 922 0.024 14.7 4.5 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain TrbC PF04956.13 99 CM007865_00024 - 87 1.2e-15 57.5 7.6 1 1 1.5e-19 1.4e-15 57.3 7.6 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 CM007865_00024 - 87 0.047 13.5 4.0 1 1 6.1e-06 0.054 13.3 3.6 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 CM007865_00026 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CM007865_00026 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 CM007865_00026 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase Resolvase PF00239.21 146 CM007865_00027 - 204 3.6e-33 114.7 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 CM007865_00027 - 204 0.027 14.2 1.2 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CM007865_00027 - 204 0.027 14.2 1.2 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 CM007865_00027 - 204 0.027 14.2 1.2 3 3 0.0087 39 4.1 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 CM007865_00027 - 204 0.047 13.7 5.4 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CM007865_00027 - 204 0.047 13.7 5.4 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CM007865_00027 - 204 0.047 13.7 5.4 3 3 0.0092 41 4.3 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 CM007865_00027 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CM007865_00027 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CM007865_00027 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat AAA_25 PF13481.6 194 CM007865_00028 - 597 5.3e-15 55.5 0.0 1 1 5e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 CM007865_00028 - 597 0.00032 20.1 0.0 1 2 8.7e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CM007865_00028 - 597 0.00032 20.1 0.0 2 2 0.012 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CM007865_00028 - 597 0.0021 17.8 0.0 1 2 6.6e-06 0.015 15.1 0.0 46 87 32 73 22 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CM007865_00028 - 597 0.0021 17.8 0.0 2 2 0.62 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 CM007865_00028 - 597 0.0072 15.7 0.0 1 2 2.6e-05 0.058 12.7 0.0 16 70 30 83 23 120 0.90 KaiC ATPase PF06745.13 231 CM007865_00028 - 597 0.0072 15.7 0.0 2 2 0.49 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC AAA PF00004.29 132 CM007865_00028 - 597 0.013 15.9 0.2 1 2 0.00015 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CM007865_00028 - 597 0.013 15.9 0.2 2 2 0.19 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 CM007865_00028 - 597 0.2 11.7 2.0 1 1 0.00043 0.95 9.5 2.0 1 29 35 63 35 529 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 CM007865_00028 - 597 0.35 10.8 3.5 1 3 0.0023 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CM007865_00028 - 597 0.35 10.8 3.5 2 3 0.2 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CM007865_00028 - 597 0.35 10.8 3.5 3 3 0.38 8.5e+02 -0.0 0.1 9 23 521 535 516 541 0.75 Apolipoprotein C-I (ApoC-1) VASP_tetra PF08776.11 37 CM007865_00028 - 597 3.8 7.2 6.1 1 2 0.006 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 CM007865_00028 - 597 3.8 7.2 6.1 2 2 0.038 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain HicA_toxin PF07927.12 58 CM007865_00029 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 CM007865_00030 - 72 4.2e-08 33.3 0.0 1 1 2.4e-12 4.4e-08 33.3 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 CM007865_00032 - 85 0.0043 17.1 1.7 1 1 6e-07 0.0054 16.8 1.7 34 88 20 76 18 80 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2633 PF11119.8 57 CM007865_00032 - 85 0.93 9.4 4.2 1 1 0.00019 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) DUF4223 PF13978.6 54 CM007865_00033 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 CM007865_00033 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 CM007865_00033 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 CM007865_00034 - 409 1.6e-08 34.8 0.2 1 2 0.7 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 CM007865_00034 - 409 1.6e-08 34.8 0.2 2 2 4.8e-12 4.3e-08 33.4 0.0 3 94 271 376 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 CM007865_00034 - 409 0.017 15.4 0.1 1 2 0.012 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 CM007865_00034 - 409 0.017 15.4 0.1 2 2 0.00015 1.3 9.3 0.0 15 83 283 359 277 369 0.80 Retrotransposon gag protein Sds3 PF08598.11 218 CM007865_00036 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 CM007865_00036 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 CM007865_00036 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 CM007865_00036 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 CM007865_00036 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 CM007865_00037 - 183 0.00012 22.0 7.0 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CM007865_00037 - 183 0.00012 22.0 7.0 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CM007865_00037 - 183 0.00012 22.0 7.0 3 3 1.2e-05 0.043 13.8 1.2 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CM007865_00037 - 183 0.063 13.4 2.6 1 1 2e-05 0.071 13.2 1.5 57 131 21 103 9 126 0.66 Stage III sporulation protein AB (spore_III_AB) NLRC4_HD PF17889.1 107 CM007865_00037 - 183 0.47 10.8 6.1 1 2 0.00044 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CM007865_00037 - 183 0.47 10.8 6.1 2 2 0.021 76 3.7 0.2 45 88 102 143 92 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 CM007865_00037 - 183 0.53 10.4 9.0 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CM007865_00037 - 183 0.53 10.4 9.0 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CM007865_00037 - 183 0.53 10.4 9.0 3 3 0.00042 1.5 8.9 0.4 8 32 103 127 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 CM007865_00037 - 183 0.57 10.5 7.1 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CM007865_00037 - 183 0.57 10.5 7.1 2 2 0.00017 0.61 10.4 1.8 1 50 71 120 71 161 0.80 DNA sulphur modification protein DndE Relaxase PF03432.14 242 CM007865_00038 - 462 7.8e-10 38.8 7.7 1 2 8.7e-14 7.8e-10 38.8 7.7 48 227 119 295 70 311 0.65 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CM007865_00038 - 462 7.8e-10 38.8 7.7 2 2 0.037 3.3e+02 0.7 5.7 137 183 348 394 316 426 0.72 Relaxase/Mobilisation nuclease domain YqaJ PF09588.10 148 CM007865_00038 - 462 0.03 14.5 3.9 1 3 2.7e-05 0.24 11.6 0.4 92 136 210 255 33 259 0.79 YqaJ-like viral recombinase domain YqaJ PF09588.10 148 CM007865_00038 - 462 0.03 14.5 3.9 2 3 0.011 96 3.1 0.0 29 63 265 300 257 306 0.71 YqaJ-like viral recombinase domain YqaJ PF09588.10 148 CM007865_00038 - 462 0.03 14.5 3.9 3 3 0.81 7.3e+03 -3.0 0.0 54 138 373 388 346 402 0.56 YqaJ-like viral recombinase domain HTH_19 PF12844.7 65 CM007865_00039 - 314 6.3e-06 26.1 0.3 1 3 0.0016 2.1 8.5 0.0 11 32 9 30 2 46 0.89 Helix-turn-helix domain HTH_19 PF12844.7 65 CM007865_00039 - 314 6.3e-06 26.1 0.3 2 3 6.9 8.9e+03 -3.2 0.0 43 52 90 99 77 105 0.56 Helix-turn-helix domain HTH_19 PF12844.7 65 CM007865_00039 - 314 6.3e-06 26.1 0.3 3 3 1.9e-05 0.024 14.6 0.0 27 64 116 152 107 153 0.92 Helix-turn-helix domain HTH_3 PF01381.22 55 CM007865_00039 - 314 7.6e-06 25.9 0.0 1 2 4.9e-08 6.2e-05 23.0 0.0 2 29 3 30 2 30 0.93 Helix-turn-helix HTH_3 PF01381.22 55 CM007865_00039 - 314 7.6e-06 25.9 0.0 2 2 0.73 9.4e+02 -0.0 0.0 26 55 118 147 110 147 0.85 Helix-turn-helix Phage_CI_repr PF07022.13 65 CM007865_00039 - 314 0.00035 20.6 0.0 1 2 4.5e-05 0.057 13.5 0.0 11 49 10 47 2 50 0.77 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 CM007865_00039 - 314 0.00035 20.6 0.0 2 2 0.028 36 4.5 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 CM007865_00039 - 314 0.0024 17.4 0.1 1 2 1.1e-05 0.015 14.9 0.1 17 35 10 28 9 29 0.93 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CM007865_00039 - 314 0.0024 17.4 0.1 2 2 0.77 9.9e+02 -0.6 0.0 26 38 98 110 95 112 0.85 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 65 CM007865_00039 - 314 0.0043 16.9 0.1 1 2 1.4e-05 0.017 14.9 0.0 4 36 5 37 2 49 0.75 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 CM007865_00039 - 314 0.0043 16.9 0.1 2 2 2.5 3.2e+03 -1.9 0.1 38 47 290 299 289 300 0.87 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_17 PF12728.7 51 CM007865_00039 - 314 0.028 14.6 0.0 1 2 0.13 1.7e+02 2.5 0.0 5 16 3 14 2 16 0.90 Helix-turn-helix domain HTH_17 PF12728.7 51 CM007865_00039 - 314 0.028 14.6 0.0 2 2 0.00031 0.4 10.9 0.0 5 27 14 36 11 42 0.85 Helix-turn-helix domain HTH_28 PF13518.6 52 CM007865_00039 - 314 0.033 14.3 0.0 1 1 6.2e-05 0.079 13.1 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain HTH_23 PF13384.6 50 CM007865_00039 - 314 0.046 13.5 0.0 1 1 8.4e-05 0.11 12.4 0.0 16 37 7 30 1 35 0.85 Homeodomain-like domain HTH_26 PF13443.6 63 CM007865_00039 - 314 0.048 14.1 0.1 1 1 8.6e-05 0.11 12.9 0.1 3 30 3 30 1 38 0.88 Cro/C1-type HTH DNA-binding domain HTH_Mga PF08280.11 60 CM007865_00039 - 314 0.049 13.7 2.0 1 3 0.0013 1.7 8.7 0.1 21 39 11 29 4 30 0.91 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CM007865_00039 - 314 0.049 13.7 2.0 2 3 0.065 83 3.3 0.0 25 59 41 75 32 76 0.80 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CM007865_00039 - 314 0.049 13.7 2.0 3 3 9 1.2e+04 -3.5 0.0 46 50 94 98 86 105 0.47 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.6 52 CM007865_00039 - 314 0.063 12.7 0.0 1 1 9.3e-05 0.12 11.8 0.0 26 47 10 30 4 33 0.90 Helix-turn-helix domain of transposase family ISL3 HTH_31 PF13560.6 64 CM007865_00039 - 314 0.075 13.4 0.0 1 1 0.00011 0.14 12.5 0.0 12 34 8 30 2 41 0.88 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 CM007865_00039 - 314 0.11 12.2 0.0 1 1 0.00022 0.28 10.9 0.0 25 46 9 30 5 30 0.93 Sigma-70, region 4 Crp PF00325.20 32 CM007865_00039 - 314 0.17 11.6 0.1 1 2 0.00033 0.43 10.3 0.0 1 19 9 27 9 28 0.86 Bacterial regulatory proteins, crp family Crp PF00325.20 32 CM007865_00039 - 314 0.17 11.6 0.1 2 2 3.2 4.1e+03 -2.5 0.0 18 24 105 111 104 112 0.83 Bacterial regulatory proteins, crp family SNF2_N PF00176.23 350 CM007865_00040 - 1137 2.3e-16 59.4 3.1 1 3 8e-20 2.9e-16 59.2 0.3 56 245 222 478 140 493 0.72 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CM007865_00040 - 1137 2.3e-16 59.4 3.1 2 3 0.37 1.3e+03 -2.2 0.0 245 283 674 717 667 738 0.71 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CM007865_00040 - 1137 2.3e-16 59.4 3.1 3 3 0.4 1.4e+03 -2.3 0.0 170 198 1082 1111 1053 1130 0.70 SNF2 family N-terminal domain ResIII PF04851.15 171 CM007865_00040 - 1137 3.2e-08 33.8 8.8 1 3 9e-12 3.2e-08 33.8 8.8 2 148 205 417 204 448 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CM007865_00040 - 1137 3.2e-08 33.8 8.8 2 3 0.99 3.6e+03 -2.2 0.2 92 135 930 931 868 990 0.52 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CM007865_00040 - 1137 3.2e-08 33.8 8.8 3 3 0.97 3.5e+03 -2.2 7.1 56 151 1032 1109 930 1132 0.60 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CM007865_00040 - 1137 6.8e-07 29.6 1.6 1 3 0.082 2.9e+02 1.8 0.0 45 73 282 310 231 315 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CM007865_00040 - 1137 6.8e-07 29.6 1.6 2 3 6.8e-09 2.4e-05 24.6 0.0 40 111 716 789 670 789 0.79 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CM007865_00040 - 1137 6.8e-07 29.6 1.6 3 3 3.3 1.2e+04 -3.3 0.1 33 66 1059 1092 1040 1096 0.56 Helicase conserved C-terminal domain DEAD PF00270.29 176 CM007865_00040 - 1137 9.8e-07 28.7 1.9 1 2 1.5e-07 0.00054 19.8 0.4 2 108 209 314 208 413 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 CM007865_00040 - 1137 9.8e-07 28.7 1.9 2 2 0.036 1.3e+02 2.2 0.1 119 153 1088 1124 1025 1135 0.69 DEAD/DEAH box helicase BST2 PF16716.5 91 CM007865_00040 - 1137 4.3 8.0 7.3 1 2 0.0023 8.1 7.1 2.7 48 87 333 372 322 376 0.89 Bone marrow stromal antigen 2 BST2 PF16716.5 91 CM007865_00040 - 1137 4.3 8.0 7.3 2 2 0.27 9.8e+02 0.4 0.1 61 80 1051 1070 1037 1080 0.77 Bone marrow stromal antigen 2 Eco57I PF07669.11 106 CM007865_00041 - 674 1.2e-05 25.7 0.3 1 1 5.6e-09 5e-05 23.8 0.3 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase MTS PF05175.14 169 CM007865_00041 - 674 0.004 16.7 0.0 1 1 1.1e-06 0.0098 15.5 0.0 31 140 308 421 298 441 0.72 Methyltransferase small domain RHH_7 PF16777.5 74 CM007865_00042 - 88 8.5e-07 29.3 0.8 1 1 5.2e-11 9.4e-07 29.1 0.8 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 CM007865_00043 - 186 7.8e-05 22.7 0.5 1 2 2.4e-07 0.0011 19.0 0.1 3 26 2 25 1 31 0.91 AAA domain AAA_31 PF13614.6 177 CM007865_00043 - 186 7.8e-05 22.7 0.5 2 2 0.04 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 CM007865_00043 - 186 0.00097 19.2 0.8 1 1 1.7e-06 0.0077 16.3 0.8 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CM007865_00043 - 186 0.014 14.8 0.0 1 1 4.3e-06 0.019 14.4 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase ParA PF10609.9 246 CM007865_00043 - 186 0.17 11.3 0.0 1 1 5.8e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 CM007865_00044 - 88 0.02 15.0 7.2 1 1 8.3e-06 0.03 14.5 7.2 51 74 44 66 25 83 0.85 T-antigen specific domain DUF1272 PF06906.11 57 CM007865_00044 - 88 0.059 13.5 6.2 1 1 2.6e-05 0.095 12.8 6.2 8 39 29 58 25 65 0.88 Protein of unknown function (DUF1272) CEBP_ZZ PF16366.5 61 CM007865_00044 - 88 0.14 12.4 6.2 1 1 5.4e-05 0.19 12.0 6.2 13 53 28 66 25 74 0.78 Cytoplasmic polyadenylation element-binding protein ZZ domain LIM PF00412.22 58 CM007865_00044 - 88 0.23 11.7 8.9 1 1 0.00011 0.4 10.9 8.9 26 57 26 58 25 59 0.86 LIM domain DUF5595 PF18077.1 73 CM007865_00044 - 88 0.9 9.7 5.1 1 2 1.4 5.1e+03 -2.4 0.1 46 59 5 18 3 22 0.62 Domain of unknown function (DUF5595) DUF5595 PF18077.1 73 CM007865_00044 - 88 0.9 9.7 5.1 2 2 5.2e-05 0.19 11.9 1.3 4 29 38 63 37 87 0.77 Domain of unknown function (DUF5595) LysE PF01810.18 193 CM007865_00045 - 81 5.1e-06 26.1 0.0 1 1 1.9e-09 5.8e-06 25.9 0.0 37 94 6 65 3 78 0.88 LysE type translocator DUF1516 PF07457.11 108 CM007865_00045 - 81 0.00027 21.1 1.1 1 1 1e-07 0.00031 20.9 1.1 37 84 5 50 1 64 0.81 Protein of unknown function (DUF1516) Ac76 PF05814.11 83 CM007865_00045 - 81 0.0043 17.0 2.2 1 1 1.7e-06 0.0049 16.8 2.2 3 70 7 70 1 78 0.88 Orf76 (Ac76) Saf_2TM PF18303.1 152 CM007865_00045 - 81 0.24 11.0 3.5 1 2 0.084 2.5e+02 1.2 0.4 72 90 5 23 2 27 0.48 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CM007865_00045 - 81 0.24 11.0 3.5 2 2 3.9e-05 0.12 12.0 0.7 60 99 21 59 15 65 0.78 SAVED-fused 2TM effector domain DUF2873 PF11395.8 43 CM007865_00045 - 81 3.7 7.5 6.8 1 2 0.00026 0.78 9.6 0.6 1 20 1 20 1 25 0.92 Protein of unknown function (DUF2873) DUF2873 PF11395.8 43 CM007865_00045 - 81 3.7 7.5 6.8 2 2 0.1 3e+02 1.4 1.1 9 24 26 41 21 48 0.74 Protein of unknown function (DUF2873) LPAM_1 PF08139.12 18 CM007865_00045 - 81 7.1 7.3 5.9 1 2 0.00035 1.1 9.9 0.6 1 16 1 16 1 16 0.97 Prokaryotic membrane lipoprotein lipid attachment site LPAM_1 PF08139.12 18 CM007865_00045 - 81 7.1 7.3 5.9 2 2 0.99 3e+03 -0.9 0.5 6 12 33 39 30 40 0.60 Prokaryotic membrane lipoprotein lipid attachment site Flp1_like PF16982.5 49 CM007865_00046 - 132 0.044 13.2 3.1 1 3 4.9e-06 0.044 13.2 3.1 17 43 17 43 16 45 0.89 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CM007865_00046 - 132 0.044 13.2 3.1 2 3 1.2 1e+04 -4.0 0.3 16 22 67 73 66 76 0.49 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CM007865_00046 - 132 0.044 13.2 3.1 3 3 1.2 1.1e+04 -4.1 1.5 18 29 92 103 89 107 0.58 Putative Flagellin, Flp1-like, domain BRI3BP PF14965.6 180 CM007865_00046 - 132 0.053 13.0 1.6 1 1 6.6e-06 0.06 12.9 1.6 59 106 51 101 9 120 0.82 Negative regulator of p53/TP53 MAF_flag10 PF01973.18 171 CM007884_00001 - 430 1.3e-43 148.6 1.0 1 1 4.5e-47 2.7e-43 147.6 1.0 11 170 3 167 1 168 0.92 Protein of unknown function DUF115 KASH_CCD PF14662.6 191 CM007884_00001 - 430 0.0075 16.1 0.5 1 1 6.2e-06 0.037 13.9 0.5 12 81 270 339 267 347 0.91 Coiled-coil region of CCDC155 or KASH Fib_alpha PF08702.10 143 CM007884_00001 - 430 0.072 13.3 4.3 1 2 0.075 4.5e+02 1.0 0.0 84 132 212 232 174 236 0.66 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CM007884_00001 - 430 0.072 13.3 4.3 2 2 5.4e-05 0.33 11.2 2.8 26 120 271 364 269 376 0.88 Fibrinogen alpha/beta chain family MAF_flag10 PF01973.18 171 CM007884_00002 - 626 1.5e-42 145.2 1.3 1 2 0.72 2.6e+03 -2.0 0.2 83 110 122 148 92 186 0.63 Protein of unknown function DUF115 MAF_flag10 PF01973.18 171 CM007884_00002 - 626 1.5e-42 145.2 1.3 2 2 8e-46 2.9e-42 144.3 0.1 1 170 209 384 209 385 0.91 Protein of unknown function DUF115 PspA_IM30 PF04012.12 221 CM007884_00002 - 626 0.054 13.1 2.0 1 1 2.3e-05 0.084 12.4 2.0 82 138 486 543 467 551 0.86 PspA/IM30 family FliE PF02049.18 89 CM007884_00002 - 626 0.086 13.0 0.1 1 1 4.5e-05 0.16 12.1 0.1 24 84 490 550 472 555 0.86 Flagellar hook-basal body complex protein FliE Sec2p PF06428.11 92 CM007884_00002 - 626 0.26 11.3 7.2 1 1 0.00023 0.83 9.7 7.2 42 87 488 533 484 538 0.89 GDP/GTP exchange factor Sec2p eIF-4B PF06273.11 502 CM007884_00002 - 626 1.3 8.0 4.0 1 1 0.00053 1.9 7.5 4.0 368 427 479 538 469 548 0.87 Plant specific eukaryotic initiation factor 4B Mur_ligase_M PF08245.12 192 CM007885_00002 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 CM007885_00002 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 CM007885_00002 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain Abhydrolase_1 PF00561.20 257 CM007885_00003 - 239 5.1e-09 36.2 0.0 1 2 1.3e-08 3.3e-05 23.7 0.0 3 95 28 112 26 120 0.87 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 257 CM007885_00003 - 239 5.1e-09 36.2 0.0 2 2 0.00011 0.27 10.8 0.0 207 254 180 226 119 228 0.78 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 220 CM007885_00003 - 239 6.4e-07 30.2 0.0 1 1 9.3e-10 2.4e-06 28.3 0.0 1 97 28 121 28 234 0.65 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 239 CM007885_00003 - 239 2.5e-05 23.7 0.0 1 1 1.5e-08 3.9e-05 23.0 0.0 7 116 28 126 25 164 0.74 Serine aminopeptidase, S33 FSH1 PF03959.13 212 CM007885_00003 - 239 0.0031 17.2 0.1 1 2 0.016 42 3.7 0.0 5 26 26 47 23 61 0.81 Serine hydrolase (FSH1) FSH1 PF03959.13 212 CM007885_00003 - 239 0.0031 17.2 0.1 2 2 0.0001 0.26 10.9 0.0 151 201 176 223 85 225 0.74 Serine hydrolase (FSH1) Lipase_3 PF01764.25 142 CM007885_00003 - 239 0.018 14.9 0.0 1 2 2e-05 0.051 13.5 0.0 44 83 57 108 17 113 0.74 Lipase (class 3) Lipase_3 PF01764.25 142 CM007885_00003 - 239 0.018 14.9 0.0 2 2 1 2.7e+03 -1.9 0.0 46 71 167 192 141 194 0.65 Lipase (class 3) Abhydrolase_4 PF08386.10 103 CM007885_00003 - 239 0.053 13.6 0.0 1 1 3.2e-05 0.083 13.0 0.0 32 65 182 215 169 238 0.78 TAP-like protein Rota_VP2 PF05087.12 884 CM007885_00003 - 239 0.056 11.6 0.0 1 1 2.7e-05 0.069 11.3 0.0 724 781 52 109 43 136 0.81 Rotavirus VP2 protein PhdYeFM_antitox PF02604.19 75 CM007885_00004 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system Dala_Dala_lig_C PF07478.13 204 CM007885_00005 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 CM007885_00005 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 CM007885_00005 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 CM007885_00005 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 CM007885_00005 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 CM007885_00005 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 CM007885_00005 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 CM007885_00005 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 CM007885_00005 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain HHH_5 PF14520.6 57 CM007885_00006 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 CM007885_00006 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 CM007885_00006 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 CM007885_00006 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 CM007885_00006 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 CM007885_00006 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 CM007885_00006 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 CM007885_00006 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 CM007885_00006 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 CM007885_00006 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 CM007885_00006 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 CM007885_00006 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 CM007885_00006 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CM007885_00006 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 CM007885_00006 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 CM007885_00006 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 CM007885_00006 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 CM007885_00006 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 CM007885_00006 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 CM007885_00006 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 CM007885_00006 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 CM007885_00006 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda FapA PF03961.13 454 CM007885_00007 - 619 3.5e-30 105.0 37.0 1 1 1.2e-33 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 CM007885_00007 - 619 0.027 13.8 8.1 1 1 1.4e-05 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein Viral_P18 PF04521.13 122 CM007885_00007 - 619 0.15 11.8 2.3 1 3 0.35 1.6e+03 -1.1 0.0 84 105 175 196 144 255 0.79 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 CM007885_00007 - 619 0.15 11.8 2.3 2 3 0.0048 21 4.9 0.0 83 122 426 465 412 465 0.83 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 CM007885_00007 - 619 0.15 11.8 2.3 3 3 0.0091 41 4.0 0.4 71 97 502 528 493 542 0.83 ssRNA positive strand viral 18kD cysteine rich protein APG6_N PF17675.1 133 CM007885_00007 - 619 0.29 11.7 8.6 1 1 0.00031 1.4 9.5 8.6 30 123 436 526 426 546 0.84 Apg6 coiled-coil region MurJ PF03023.14 452 CM007885_00008 - 483 1e-91 307.8 60.1 1 1 1.9e-95 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ Bunya_G2 PF03563.13 285 CM007885_00008 - 483 1.5 8.0 7.4 1 1 0.00035 3.1 7.0 7.4 186 221 443 478 434 483 0.91 Bunyavirus glycoprotein G2 tRNA-synt_1e PF01406.19 301 CM007885_00009 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 CM007885_00009 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 CM007885_00009 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 CM007885_00009 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 CM007885_00009 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 CM007885_00009 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 CM007885_00009 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 CM007885_00009 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 CM007885_00009 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 CM007885_00009 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 CM007885_00009 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 CM007885_00009 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) ABC_membrane PF00664.23 274 CM007885_00010 - 580 4.4e-48 164.3 8.4 1 1 3.6e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 CM007885_00010 - 580 4.9e-31 108.1 0.1 1 1 5.5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 CM007885_00010 - 580 6e-10 38.9 5.9 1 1 8.5e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 CM007885_00010 - 580 0.00081 19.3 0.2 1 2 4.6 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 CM007885_00010 - 580 0.00081 19.3 0.2 2 2 1.2e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 CM007885_00010 - 580 0.0025 18.1 0.4 1 1 1.7e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 CM007885_00010 - 580 0.0056 16.9 0.2 1 1 2.8e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 CM007885_00010 - 580 0.0098 15.6 0.1 1 1 2.5e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 CM007885_00010 - 580 0.024 15.0 0.3 1 3 1 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 CM007885_00010 - 580 0.024 15.0 0.3 2 3 1.5e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 CM007885_00010 - 580 0.024 15.0 0.3 3 3 0.91 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 CM007885_00010 - 580 0.035 14.5 0.0 1 1 5.7e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 CM007885_00010 - 580 0.094 12.5 0.7 1 2 4.6 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 CM007885_00010 - 580 0.094 12.5 0.7 2 2 0.00012 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 114 CM007885_00010 - 580 0.11 12.6 0.9 1 1 0.00033 0.53 10.4 0.9 2 42 369 417 368 550 0.69 50S ribosome-binding GTPase DHO_dh PF01180.21 295 CM007885_00011 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 CM007885_00011 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 CM007885_00011 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 CM007885_00011 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 CM007885_00011 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family Peptidase_M16_C PF05193.21 183 CM007885_00012 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 CM007885_00012 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 CM007885_00012 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 CM007885_00012 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 CM007885_00012 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 CM007885_00012 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHDPS PF00701.22 289 CM007885_00013 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 CM007885_00013 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 CM007885_00013 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 adh_short_C2 PF13561.6 234 CM007885_00014 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 CM007885_00014 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 CM007885_00014 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 CM007885_00014 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 CM007885_00014 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif DUF1129 PF06570.11 206 CM007885_00015 - 101 0.24 10.9 5.2 1 1 3.7e-05 0.67 9.4 3.4 80 129 1 68 1 74 0.83 Protein of unknown function (DUF1129) Lactamase_B PF00753.27 197 CM007885_00016 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 CM007885_00016 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain NAD_synthase PF02540.17 242 CM007885_00017 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 CM007885_00017 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 CM007885_00017 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 CM007885_00017 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 CM007885_00017 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 CM007885_00017 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 CM007885_00017 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 CM007885_00017 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 CM007885_00017 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family LpxK PF02606.14 327 CM007885_00018 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 CM007885_00018 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 CM007885_00018 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CM007885_00018 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) PALP PF00291.25 294 CM007885_00019 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 CM007885_00019 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 CM007885_00019 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 CM007885_00019 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 CM007885_00019 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 CM007885_00019 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain CTP_transf_3 PF02348.19 221 CM007885_00020 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 CM007885_00020 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 CM007885_00020 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 CM007885_00020 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 CM007885_00020 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain Mur_ligase_M PF08245.12 192 CM007886_00002 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 CM007886_00002 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 CM007886_00002 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain Abhydrolase_1 PF00561.20 257 CM007886_00003 - 239 5.1e-09 36.2 0.0 1 2 1.3e-08 3.3e-05 23.7 0.0 3 95 28 112 26 120 0.87 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 257 CM007886_00003 - 239 5.1e-09 36.2 0.0 2 2 0.00011 0.27 10.8 0.0 207 254 180 226 119 228 0.78 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 220 CM007886_00003 - 239 6.4e-07 30.2 0.0 1 1 9.3e-10 2.4e-06 28.3 0.0 1 97 28 121 28 234 0.65 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 239 CM007886_00003 - 239 2.5e-05 23.7 0.0 1 1 1.5e-08 3.9e-05 23.0 0.0 7 116 28 126 25 164 0.74 Serine aminopeptidase, S33 FSH1 PF03959.13 212 CM007886_00003 - 239 0.0031 17.2 0.1 1 2 0.016 42 3.7 0.0 5 26 26 47 23 61 0.81 Serine hydrolase (FSH1) FSH1 PF03959.13 212 CM007886_00003 - 239 0.0031 17.2 0.1 2 2 0.0001 0.26 10.9 0.0 151 201 176 223 85 225 0.74 Serine hydrolase (FSH1) Lipase_3 PF01764.25 142 CM007886_00003 - 239 0.018 14.9 0.0 1 2 2e-05 0.051 13.5 0.0 44 83 57 108 17 113 0.74 Lipase (class 3) Lipase_3 PF01764.25 142 CM007886_00003 - 239 0.018 14.9 0.0 2 2 1 2.7e+03 -1.9 0.0 46 71 167 192 141 194 0.65 Lipase (class 3) Abhydrolase_4 PF08386.10 103 CM007886_00003 - 239 0.053 13.6 0.0 1 1 3.2e-05 0.083 13.0 0.0 32 65 182 215 169 238 0.78 TAP-like protein Rota_VP2 PF05087.12 884 CM007886_00003 - 239 0.056 11.6 0.0 1 1 2.7e-05 0.069 11.3 0.0 724 781 52 109 43 136 0.81 Rotavirus VP2 protein PhdYeFM_antitox PF02604.19 75 CM007886_00004 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system Dala_Dala_lig_C PF07478.13 204 CM007886_00005 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 CM007886_00005 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 CM007886_00005 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 CM007886_00005 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 CM007886_00005 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 CM007886_00005 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 CM007886_00005 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 CM007886_00005 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 CM007886_00005 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain HHH_5 PF14520.6 57 CM007886_00006 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 CM007886_00006 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 CM007886_00006 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 CM007886_00006 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 CM007886_00006 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 CM007886_00006 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 CM007886_00006 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 CM007886_00006 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 CM007886_00006 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 CM007886_00006 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 CM007886_00006 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 CM007886_00006 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 CM007886_00006 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CM007886_00006 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 CM007886_00006 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 CM007886_00006 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 CM007886_00006 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 CM007886_00006 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 CM007886_00006 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 CM007886_00006 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 CM007886_00006 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 CM007886_00006 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda FapA PF03961.13 454 CM007886_00007 - 619 3.5e-30 105.0 37.0 1 1 1.2e-33 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 CM007886_00007 - 619 0.027 13.8 8.1 1 1 1.4e-05 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein Viral_P18 PF04521.13 122 CM007886_00007 - 619 0.15 11.8 2.3 1 3 0.35 1.6e+03 -1.1 0.0 84 105 175 196 144 255 0.79 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 CM007886_00007 - 619 0.15 11.8 2.3 2 3 0.0048 21 4.9 0.0 83 122 426 465 412 465 0.83 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 CM007886_00007 - 619 0.15 11.8 2.3 3 3 0.0091 41 4.0 0.4 71 97 502 528 493 542 0.83 ssRNA positive strand viral 18kD cysteine rich protein APG6_N PF17675.1 133 CM007886_00007 - 619 0.29 11.7 8.6 1 1 0.00031 1.4 9.5 8.6 30 123 436 526 426 546 0.84 Apg6 coiled-coil region MurJ PF03023.14 452 CM007886_00008 - 483 1e-91 307.8 60.1 1 1 1.9e-95 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ Bunya_G2 PF03563.13 285 CM007886_00008 - 483 1.5 8.0 7.4 1 1 0.00035 3.1 7.0 7.4 186 221 443 478 434 483 0.91 Bunyavirus glycoprotein G2 tRNA-synt_1e PF01406.19 301 CM007886_00009 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 CM007886_00009 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 CM007886_00009 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 CM007886_00009 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 CM007886_00009 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 CM007886_00009 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 CM007886_00009 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 CM007886_00009 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 CM007886_00009 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 CM007886_00009 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 CM007886_00009 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 CM007886_00009 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) ABC_membrane PF00664.23 274 CM007886_00010 - 580 4.4e-48 164.3 8.4 1 1 3.6e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 CM007886_00010 - 580 4.9e-31 108.1 0.1 1 1 5.5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 CM007886_00010 - 580 6e-10 38.9 5.9 1 1 8.5e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 CM007886_00010 - 580 0.00081 19.3 0.2 1 2 4.6 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 CM007886_00010 - 580 0.00081 19.3 0.2 2 2 1.2e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 CM007886_00010 - 580 0.0025 18.1 0.4 1 1 1.7e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 CM007886_00010 - 580 0.0056 16.9 0.2 1 1 2.8e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 CM007886_00010 - 580 0.0098 15.6 0.1 1 1 2.5e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 CM007886_00010 - 580 0.024 15.0 0.3 1 3 1 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 CM007886_00010 - 580 0.024 15.0 0.3 2 3 1.5e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 CM007886_00010 - 580 0.024 15.0 0.3 3 3 0.91 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 CM007886_00010 - 580 0.035 14.5 0.0 1 1 5.7e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 CM007886_00010 - 580 0.094 12.5 0.7 1 2 4.6 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 CM007886_00010 - 580 0.094 12.5 0.7 2 2 0.00012 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 114 CM007886_00010 - 580 0.11 12.6 0.9 1 1 0.00033 0.53 10.4 0.9 2 42 369 417 368 550 0.69 50S ribosome-binding GTPase DHO_dh PF01180.21 295 CM007886_00011 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 CM007886_00011 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 CM007886_00011 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 CM007886_00011 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 CM007886_00011 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family Peptidase_M16_C PF05193.21 183 CM007886_00012 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 CM007886_00012 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 CM007886_00012 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 CM007886_00012 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 CM007886_00012 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 CM007886_00012 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHDPS PF00701.22 289 CM007886_00013 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 CM007886_00013 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 CM007886_00013 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 adh_short_C2 PF13561.6 234 CM007886_00014 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 CM007886_00014 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 CM007886_00014 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 CM007886_00014 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 CM007886_00014 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif DUF1129 PF06570.11 206 CM007886_00015 - 101 0.24 10.9 5.2 1 1 3.7e-05 0.67 9.4 3.4 80 129 1 68 1 74 0.83 Protein of unknown function (DUF1129) Lactamase_B PF00753.27 197 CM007886_00016 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 CM007886_00016 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain NAD_synthase PF02540.17 242 CM007886_00017 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 CM007886_00017 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 CM007886_00017 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 CM007886_00017 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 CM007886_00017 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 CM007886_00017 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 CM007886_00017 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 CM007886_00017 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 CM007886_00017 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family LpxK PF02606.14 327 CM007886_00018 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 CM007886_00018 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 CM007886_00018 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CM007886_00018 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) PALP PF00291.25 294 CM007886_00019 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 CM007886_00019 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 CM007886_00019 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 CM007886_00019 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 CM007886_00019 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 CM007886_00019 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain CTP_transf_3 PF02348.19 221 CM007886_00020 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 CM007886_00020 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 CM007886_00020 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 CM007886_00020 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 CM007886_00020 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain MAF_flag10 PF01973.18 171 CM007887_00001 - 462 3.7e-42 143.9 0.7 1 2 6.1e-46 5.4e-42 143.4 0.1 2 170 59 226 58 227 0.91 Protein of unknown function DUF115 MAF_flag10 PF01973.18 171 CM007887_00001 - 462 3.7e-42 143.9 0.7 2 2 0.84 7.5e+03 -3.5 0.0 60 91 359 390 358 395 0.70 Protein of unknown function DUF115 Med15_fungi PF05397.12 112 CM007887_00001 - 462 0.011 16.0 0.7 1 2 0.041 3.7e+02 1.4 0.0 78 108 260 290 243 292 0.83 Mediator complex subunit 15 Med15_fungi PF05397.12 112 CM007887_00001 - 462 0.011 16.0 0.7 2 2 1.6e-05 0.15 12.4 0.2 56 105 339 388 325 394 0.85 Mediator complex subunit 15 Mur_ligase_M PF08245.12 192 CM007888_00001 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 CM007888_00001 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 CM007888_00001 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain DUF4570 PF15134.6 110 CM007888_00002 - 423 0.17 11.9 1.7 1 1 1.8e-05 0.32 11.0 1.7 27 98 4 76 1 84 0.78 Domain of unknown function (DUF4570) CTP_transf_3 PF02348.19 221 CM007888_00003 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 CM007888_00003 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 CM007888_00003 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 CM007888_00003 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 CM007888_00003 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain PALP PF00291.25 294 CM007888_00004 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 CM007888_00004 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 CM007888_00004 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 CM007888_00004 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 CM007888_00004 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 CM007888_00004 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain LpxK PF02606.14 327 CM007888_00005 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 CM007888_00005 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 CM007888_00005 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CM007888_00005 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) NAD_synthase PF02540.17 242 CM007888_00006 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 CM007888_00006 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 CM007888_00006 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 CM007888_00006 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 CM007888_00006 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 CM007888_00006 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 CM007888_00006 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 CM007888_00006 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 CM007888_00006 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family Lactamase_B PF00753.27 197 CM007888_00007 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 CM007888_00007 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain DUF1129 PF06570.11 206 CM007888_00008 - 101 0.24 10.9 5.2 1 1 3.7e-05 0.67 9.4 3.4 80 129 1 68 1 74 0.83 Protein of unknown function (DUF1129) adh_short_C2 PF13561.6 234 CM007888_00009 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 CM007888_00009 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 CM007888_00009 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 CM007888_00009 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 CM007888_00009 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif DHDPS PF00701.22 289 CM007888_00010 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 CM007888_00010 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 CM007888_00010 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 Peptidase_M16_C PF05193.21 183 CM007888_00011 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 CM007888_00011 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 CM007888_00011 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 CM007888_00011 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 CM007888_00011 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 CM007888_00011 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHO_dh PF01180.21 295 CM007888_00012 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 CM007888_00012 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 CM007888_00012 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 CM007888_00012 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 CM007888_00012 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family ABC_membrane PF00664.23 274 CM007888_00013 - 580 4.4e-48 164.3 8.4 1 1 3.6e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 CM007888_00013 - 580 4.9e-31 108.1 0.1 1 1 5.5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 CM007888_00013 - 580 6e-10 38.9 5.9 1 1 8.5e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 CM007888_00013 - 580 0.00081 19.3 0.2 1 2 4.6 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 CM007888_00013 - 580 0.00081 19.3 0.2 2 2 1.2e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 CM007888_00013 - 580 0.0025 18.1 0.4 1 1 1.7e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 CM007888_00013 - 580 0.0056 16.9 0.2 1 1 2.8e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 CM007888_00013 - 580 0.0098 15.6 0.1 1 1 2.5e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 CM007888_00013 - 580 0.024 15.0 0.3 1 3 1 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 CM007888_00013 - 580 0.024 15.0 0.3 2 3 1.5e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 CM007888_00013 - 580 0.024 15.0 0.3 3 3 0.91 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 CM007888_00013 - 580 0.035 14.5 0.0 1 1 5.7e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 CM007888_00013 - 580 0.094 12.5 0.7 1 2 4.6 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 CM007888_00013 - 580 0.094 12.5 0.7 2 2 0.00012 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 114 CM007888_00013 - 580 0.11 12.6 0.9 1 1 0.00033 0.53 10.4 0.9 2 42 369 417 368 550 0.69 50S ribosome-binding GTPase tRNA-synt_1e PF01406.19 301 CM007888_00014 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 CM007888_00014 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 CM007888_00014 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 CM007888_00014 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 CM007888_00014 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 CM007888_00014 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 CM007888_00014 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 CM007888_00014 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 CM007888_00014 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 CM007888_00014 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 CM007888_00014 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 CM007888_00014 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) MurJ PF03023.14 452 CM007888_00015 - 483 1e-91 307.8 60.1 1 1 1.9e-95 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ Bunya_G2 PF03563.13 285 CM007888_00015 - 483 1.5 8.0 7.4 1 1 0.00035 3.1 7.0 7.4 186 221 443 478 434 483 0.91 Bunyavirus glycoprotein G2 FapA PF03961.13 454 CM007888_00016 - 619 3.5e-30 105.0 37.0 1 1 1.2e-33 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 CM007888_00016 - 619 0.027 13.8 8.1 1 1 1.4e-05 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein Viral_P18 PF04521.13 122 CM007888_00016 - 619 0.15 11.8 2.3 1 3 0.35 1.6e+03 -1.1 0.0 84 105 175 196 144 255 0.79 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 CM007888_00016 - 619 0.15 11.8 2.3 2 3 0.0048 21 4.9 0.0 83 122 426 465 412 465 0.83 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 CM007888_00016 - 619 0.15 11.8 2.3 3 3 0.0091 41 4.0 0.4 71 97 502 528 493 542 0.83 ssRNA positive strand viral 18kD cysteine rich protein APG6_N PF17675.1 133 CM007888_00016 - 619 0.29 11.7 8.6 1 1 0.00031 1.4 9.5 8.6 30 123 436 526 426 546 0.84 Apg6 coiled-coil region HHH_5 PF14520.6 57 CM007888_00017 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 CM007888_00017 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 CM007888_00017 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 CM007888_00017 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 CM007888_00017 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 CM007888_00017 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 CM007888_00017 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 CM007888_00017 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 CM007888_00017 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 CM007888_00017 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 CM007888_00017 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 CM007888_00017 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 CM007888_00017 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CM007888_00017 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 CM007888_00017 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 CM007888_00017 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 CM007888_00017 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 CM007888_00017 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 CM007888_00017 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 CM007888_00017 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 CM007888_00017 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 CM007888_00017 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda Dala_Dala_lig_C PF07478.13 204 CM007888_00018 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 CM007888_00018 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 CM007888_00018 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 CM007888_00018 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 CM007888_00018 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 CM007888_00018 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 CM007888_00018 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 CM007888_00018 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 CM007888_00018 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain PhdYeFM_antitox PF02604.19 75 CM007888_00019 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system W2 PF02020.18 79 CP000549_00001 - 357 0.037 14.2 0.0 1 1 5.5e-06 0.099 12.8 0.0 38 77 271 331 267 333 0.86 eIF4-gamma/eIF5/eIF2-epsilon Lip_prot_lig_C PF10437.9 85 CP000549_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 CP000549_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 CP000549_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP000549_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 CP000549_00003 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CP000549_00003 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 CP000549_00004 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 CP000549_00004 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP000549_00004 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 CP000549_00004 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 CP000549_00004 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 CP000549_00004 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 CP000549_00004 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP000549_00004 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP000549_00004 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 CP000549_00005 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP000549_00005 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP000549_00005 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP000549_00005 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP000549_00005 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP000549_00005 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 CP000549_00006 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP000549_00006 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 CP000549_00007 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP000549_00007 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP000549_00007 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP000549_00007 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP000549_00007 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP000549_00007 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 CP000549_00008 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 CP000549_00009 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP000549_00009 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP000549_00009 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 CP000549_00009 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP000549_00009 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP000549_00009 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP000549_00009 - 1932 9.9e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP000549_00009 - 1932 9.9e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP000549_00009 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 CP000549_00009 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP000549_00009 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP000549_00009 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 CP000549_00010 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 CP000549_00010 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 CP000549_00011 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP000549_00011 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 CP000549_00012 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP000549_00012 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP000549_00012 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP000549_00012 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP000549_00012 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP000549_00012 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP000549_00012 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 CP000549_00012 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP000549_00012 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 CP000549_00012 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP000549_00012 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 CP000549_00013 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 CP000549_00013 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP000549_00013 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 CP000549_00013 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 CP000549_00013 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 CP000549_00015 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 CP000549_00015 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 CP000549_00016 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 CP000549_00016 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 CP000549_00016 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 CP000549_00016 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP000549_00016 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 CP000549_00017 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 CP000549_00017 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) UBA_6 PF18039.1 42 CP000549_00018 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 CP000549_00018 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 CP000549_00018 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 CP000549_00018 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 CP000549_00019 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 CP000549_00019 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 CP000549_00019 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 CP000549_00021 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 CP000549_00022 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 CP000549_00023 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 CP000549_00023 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP000549_00023 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP000549_00023 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP000549_00023 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 CP000549_00023 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP000549_00023 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 CP000549_00023 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 CP000549_00023 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 CP000549_00023 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 CP000549_00023 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 CP000549_00023 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 CP000549_00024 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP000549_00024 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP000549_00024 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 CP000549_00024 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP000549_00024 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP000549_00024 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP000549_00024 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 CP000549_00024 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP000549_00024 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP000549_00024 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 CP000549_00025 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP000549_00025 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 CP000549_00025 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 CP000549_00027 - 87 3.5e-13 49.6 6.7 1 1 4.5e-17 4e-13 49.4 6.7 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP000549_00027 - 87 0.17 11.8 4.4 1 1 2.6e-05 0.23 11.3 4.4 78 135 37 87 9 87 0.70 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 CP000549_00028 - 922 4.9e-50 170.5 0.5 1 1 1.9e-53 1.2e-49 169.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP000549_00028 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 CP000549_00028 - 922 0.048 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 CP000549_00029 - 188 2e-29 102.0 0.1 1 1 1.9e-33 3.3e-29 101.3 0.1 2 88 24 122 23 122 0.83 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 CP000549_00030 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 CP000549_00030 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 CP000549_00030 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 CP000549_00030 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP000549_00030 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP000549_00030 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 CP000549_00030 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP000549_00030 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP000549_00030 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 CP000549_00030 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 CP000549_00030 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 CP000549_00030 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP000549_00030 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP000549_00030 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 CP000549_00031 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 CP000549_00032 - 91 0.00046 19.9 6.9 1 2 5.3e-08 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP000549_00032 - 91 0.00046 19.9 6.9 2 2 0.014 1.3e+02 2.5 0.2 31 52 57 78 56 80 0.82 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP000549_00032 - 91 0.0053 17.3 1.0 1 1 6.9e-07 0.0062 17.1 1.0 21 87 9 81 1 85 0.90 FliG N-terminal domain T4SS PF07996.11 197 CP000549_00033 - 323 7.9e-29 101.5 13.4 1 1 4e-32 1e-28 101.1 13.4 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 CP000549_00033 - 323 0.0081 16.3 0.6 1 2 0.99 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP000549_00033 - 323 0.0081 16.3 0.6 2 2 1.2e-05 0.03 14.5 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CP000549_00033 - 323 0.014 16.1 5.0 1 2 0.046 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP000549_00033 - 323 0.014 16.1 5.0 2 2 5.3e-06 0.014 16.1 5.0 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 CP000549_00033 - 323 0.043 14.5 0.8 1 2 2.2 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP000549_00033 - 323 0.043 14.5 0.8 2 2 1.7e-05 0.043 14.5 0.8 32 84 209 270 202 296 0.83 von Willebrand factor type A domain KNOX2 PF03791.13 48 CP000549_00033 - 323 0.07 12.6 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 CP000549_00033 - 323 0.07 12.6 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain THOC7 PF05615.13 132 CP000549_00033 - 323 1.2 9.4 11.3 1 2 0.00061 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 CP000549_00033 - 323 1.2 9.4 11.3 2 2 0.17 4.4e+02 1.1 6.3 16 71 231 294 202 315 0.50 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 CP000549_00033 - 323 3.5 7.1 7.2 1 2 0.19 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 CP000549_00033 - 323 3.5 7.1 7.2 2 2 0.00046 1.2 8.6 3.3 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein TrbL PF04610.14 215 CP000549_00034 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP000549_00034 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP000549_00034 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP000549_00034 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 CP000549_00034 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 CP000549_00035 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CP000549_00035 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 CP000549_00036 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CP000549_00036 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 CP000549_00037 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CP000549_00037 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CP000549_00037 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 CP000549_00038 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP000549_00038 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 CP000549_00039 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP000549_00039 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP000549_00039 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP000549_00039 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP000549_00039 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CP000549_00039 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CP000549_00039 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CP000549_00039 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP000549_00039 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CP000549_00039 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP000549_00039 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP000549_00039 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CP000549_00039 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CP000549_00039 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CP000549_00039 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP000549_00039 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CP000549_00039 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CP000549_00039 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CP000549_00039 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CP000549_00039 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CP000549_00039 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP000549_00039 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CP000549_00039 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP000549_00039 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP000549_00039 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CP000549_00039 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CP000549_00039 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 CP000549_00039 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP000549_00039 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP000549_00039 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CP000549_00039 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 CP000549_00039 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 CP000549_00040 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP000549_00040 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP000549_00040 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP000549_00040 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CP000549_00040 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 CP000549_00041 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 CP000549_00041 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 CP000549_00041 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CP000549_00041 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CP000549_00041 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 CP000549_00042 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 CP000549_00043 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 CP000549_00043 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 CP000549_00043 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 CP000549_00043 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP000549_00043 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP000549_00043 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 CP000549_00045 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP000549_00045 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 CP000549_00046 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP000549_00046 - 730 5.6e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP000549_00046 - 730 5.6e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 CP000549_00046 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP000549_00046 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP000549_00046 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP000549_00046 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP000549_00046 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CP000549_00046 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP000549_00046 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CP000549_00046 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP000549_00046 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 CP000549_00046 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 CP000549_00046 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 CP000549_00046 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP000549_00046 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CP000549_00046 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP000549_00046 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 CP000549_00046 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 CP000549_00046 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP000549_00046 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 CP000549_00046 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP000549_00046 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP000549_00046 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 CP000549_00046 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 CP000549_00046 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 CP000549_00046 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP000549_00046 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 CP000549_00046 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 CP000549_00046 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 CP000549_00046 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 CP000549_00046 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 CP000549_00046 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 CP000549_00046 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 CP000549_00047 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP000549_00047 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 CP000549_00049 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP000549_00049 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP000549_00049 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP000549_00049 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP000549_00049 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP000549_00049 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP000549_00049 - 639 0.00029 21.1 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP000549_00049 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP000549_00049 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP000549_00049 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 CP000549_00049 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 CP000549_00050 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 CP000549_00050 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 CP004067_00001 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 CP004067_00001 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 CP004067_00001 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 CP004067_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 CP004067_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 CP004067_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP004067_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain DHHC PF01529.20 134 CP004067_00004 - 107 4.1 7.5 13.1 1 1 0.0014 13 5.9 13.1 29 78 15 64 9 105 0.49 DHHC palmitoyltransferase DUF4133 PF13571.6 91 CP004067_00004 - 107 5.6 7.4 7.4 1 1 0.00084 7.5 7.0 6.7 19 65 34 80 30 92 0.77 Domain of unknown function (DUF4133) DHHC PF01529.20 134 CP004067_00006 - 89 0.033 14.3 6.3 1 1 4.4e-06 0.039 14.0 6.3 53 119 2 67 1 74 0.81 DHHC palmitoyltransferase T4SS_CagC PF16943.5 107 CP004067_00006 - 89 0.046 13.9 0.2 1 1 6.2e-06 0.056 13.6 0.2 45 99 2 56 1 65 0.72 Cag pathogenicity island, type IV secretory system DUF4044 PF13253.6 33 CP004067_00008 - 189 0.035 13.6 0.8 1 1 1.4e-05 0.062 12.8 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP004067_00008 - 189 0.065 13.0 0.1 1 1 2e-05 0.091 12.5 0.1 81 149 12 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction DUF2070 PF09843.9 564 CP004067_00008 - 189 0.072 11.4 1.1 1 1 2.4e-05 0.11 10.8 1.1 127 214 24 108 11 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP004067_00008 - 189 9.1 6.0 13.6 1 2 3.3e-05 0.15 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP004067_00008 - 189 9.1 6.0 13.6 2 2 1.3 5.9e+03 -3.2 0.6 118 133 152 167 144 179 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 CP004067_00009 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP004067_00009 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) adh_short PF00106.25 195 CP004067_00010 - 177 0.034 13.6 0.0 1 1 4.8e-06 0.043 13.3 0.0 17 109 60 162 52 170 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP004067_00010 - 177 0.1 12.9 0.0 1 1 2e-05 0.18 12.1 0.0 21 78 75 129 61 138 0.81 Mur ligase family, glutamate ligase domain RHH_7 PF16777.5 74 CP004067_00011 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 CP004067_00011 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal SNF2_N PF00176.23 350 CP004067_00012 - 1931 3.7e-16 58.8 2.9 1 3 1.3e-19 4.5e-16 58.5 0.1 57 245 1017 1272 935 1313 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP004067_00012 - 1931 3.7e-16 58.8 2.9 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP004067_00012 - 1931 3.7e-16 58.8 2.9 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1875 1923 1845 1924 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 CP004067_00012 - 1931 7.5e-08 32.6 8.9 1 2 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP004067_00012 - 1931 7.5e-08 32.6 8.9 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1798 1909 1724 1931 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP004067_00012 - 1931 9.7e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP004067_00012 - 1931 9.7e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP004067_00012 - 1931 9.5e-06 25.5 2.0 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 CP004067_00012 - 1931 9.5e-06 25.5 2.0 2 2 0.12 4.2e+02 0.6 0.0 119 150 1882 1915 1827 1930 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP004067_00012 - 1931 2.5e-05 24.7 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP004067_00012 - 1931 2.5e-05 24.7 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 CP004067_00013 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 CP004067_00013 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 CP004067_00013 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 CP004067_00013 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) Acetyltransf_7 PF13508.7 76 CP004067_00014 - 166 0.00015 22.1 0.0 1 1 1e-07 0.00031 21.1 0.0 29 75 12 75 2 76 0.60 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 CP004067_00014 - 166 0.003 17.8 0.0 1 1 2.5e-06 0.0073 16.5 0.0 65 92 14 41 6 74 0.80 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 CP004067_00014 - 166 0.0052 16.8 0.3 1 1 2.7e-06 0.0082 16.2 0.3 24 67 103 146 86 150 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PHM7_cyt PF14703.6 176 CP004067_00014 - 166 0.095 12.9 0.2 1 1 5.2e-05 0.15 12.2 0.2 30 85 98 153 86 159 0.81 Cytosolic domain of 10TM putative phosphate transporter Acetyltransf_10 PF13673.7 127 CP004067_00014 - 166 0.12 12.4 0.0 1 1 0.00011 0.33 10.9 0.0 55 84 13 42 4 84 0.79 Acetyltransferase (GNAT) domain Spc24 PF08286.11 105 CP004067_00014 - 166 0.39 11.0 3.2 1 2 0.00045 1.3 9.3 0.2 54 89 63 108 31 115 0.67 Spc24 subunit of Ndc80 Spc24 PF08286.11 105 CP004067_00014 - 166 0.39 11.0 3.2 2 2 0.04 1.2e+02 3.0 0.7 12 43 111 142 101 152 0.69 Spc24 subunit of Ndc80 DUF3913 PF13052.6 57 CP004067_00015 - 82 0.046 14.0 0.3 1 1 4.2e-06 0.076 13.3 0.2 29 53 35 58 28 62 0.76 Protein of unknown function (DUF3913) Relaxase PF03432.14 242 CP004067_00016 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP004067_00016 - 462 4.7e-10 39.5 7.4 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 CP004067_00017 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP004067_00017 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP004067_00017 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP004067_00017 - 183 0.046 13.8 2.1 1 1 1.7e-05 0.063 13.4 1.5 55 131 19 103 9 124 0.70 Stage III sporulation protein AB (spore_III_AB) NLRC4_HD PF17889.1 107 CP004067_00017 - 183 0.18 12.1 5.5 1 2 0.00027 0.98 9.8 1.8 14 92 6 84 3 98 0.81 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP004067_00017 - 183 0.18 12.1 5.5 2 2 0.016 56 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 CP004067_00017 - 183 0.41 10.7 8.1 1 3 0.32 1.1e+03 -0.3 0.1 40 55 12 27 4 54 0.75 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP004067_00017 - 183 0.41 10.7 8.1 2 3 0.011 39 4.4 0.6 11 46 56 91 51 97 0.87 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP004067_00017 - 183 0.41 10.7 8.1 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 CP004067_00017 - 183 0.42 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP004067_00017 - 183 0.42 10.9 6.2 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 CP004067_00018 - 99 1.1 9.1 11.3 1 2 4.4e-05 0.26 11.1 5.3 18 48 6 36 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP004067_00018 - 99 1.1 9.1 11.3 2 2 0.074 4.4e+02 0.7 0.1 97 112 60 75 46 85 0.67 CdvA-like coiled-coil domain ESP PF16590.5 91 CP004067_00018 - 99 1.4 9.3 6.9 1 2 0.025 1.5e+02 2.7 1.5 26 73 3 47 2 53 0.62 Exocrine gland-secreting peptide ESP PF16590.5 91 CP004067_00018 - 99 1.4 9.3 6.9 2 2 5.2e-05 0.31 11.3 1.2 26 59 43 79 42 99 0.74 Exocrine gland-secreting peptide DUF3671 PF12420.8 115 CP004067_00018 - 99 1.7 8.7 15.5 1 2 0.024 1.4e+02 2.6 3.6 24 49 17 42 3 46 0.72 Protein of unknown function DUF3671 PF12420.8 115 CP004067_00018 - 99 1.7 8.7 15.5 2 2 2.6e-05 0.15 12.1 4.1 4 42 59 95 56 98 0.85 Protein of unknown function Ribonuc_2-5A PF06479.12 127 CP004067_00022 - 152 0.065 13.4 5.2 1 1 2.2e-05 0.2 11.9 5.2 38 91 57 113 1 119 0.63 Ribonuclease 2-5A DUF5311 PF17238.2 194 CP004067_00022 - 152 0.065 13.1 0.1 1 1 1e-05 0.089 12.7 0.1 88 125 72 111 46 123 0.81 Family of unknown function (DUF5311) Toprim_3 PF13362.6 95 CP004067_00023 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 CP004067_00023 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 CP004067_00023 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 CP004067_00023 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP004067_00023 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 CP004067_00024 - 97 0.007 16.3 0.0 1 1 1.7e-06 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) nec1 PF10379.9 184 CP004067_00024 - 97 0.067 12.7 0.0 1 1 1.1e-05 0.099 12.1 0.0 65 105 56 94 35 96 0.75 Virulence protein nec1 Sdh_cyt PF01127.22 121 CP004067_00025 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 CP004067_00025 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 CP004067_00025 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 CP004067_00027 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 CP004067_00028 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 CP004067_00029 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 CP004067_00029 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP004067_00029 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP004067_00029 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP004067_00029 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 CP004067_00029 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 CP004067_00029 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 CP004067_00029 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP004067_00029 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 CP004067_00029 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 CP004067_00029 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP004067_00029 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP004067_00029 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 CP004067_00030 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP004067_00030 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 CP004067_00030 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 CP004067_00030 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP004067_00030 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP004067_00030 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP004067_00030 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain CRISPR_Cas2 PF09827.9 76 CP004067_00031 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP004067_00031 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 TrbC PF04956.13 99 CP004067_00033 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP004067_00033 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 CP004067_00034 - 922 3.1e-51 174.4 0.4 1 1 7.9e-55 7.1e-51 173.2 0.4 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP004067_00034 - 922 3.6e-21 75.2 0.8 1 1 6.9e-25 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein Phage_pRha PF09669.10 88 CP004067_00035 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 CP004067_00035 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 CP004067_00035 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) PBECR2 PF18810.1 119 CP004067_00036 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 SSB PF00436.25 104 CP004067_00037 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 CP004067_00038 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP004067_00038 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP004067_00038 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP004067_00038 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP004067_00038 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP004067_00038 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP004067_00038 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 CP004067_00039 - 329 1.7e-28 100.4 13.1 1 1 5.2e-32 2.3e-28 99.9 13.1 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 CP004067_00039 - 329 0.0035 17.5 0.5 1 2 0.27 1.2e+03 -0.3 0.0 30 54 134 158 120 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP004067_00039 - 329 0.0035 17.5 0.5 2 2 4.7e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 CP004067_00039 - 329 0.018 15.7 0.8 1 2 1.3 6e+03 -2.1 0.0 55 70 124 139 101 163 0.57 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP004067_00039 - 329 0.018 15.7 0.8 2 2 8.6e-06 0.039 14.6 0.2 31 84 208 270 197 295 0.83 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 CP004067_00039 - 329 0.48 11.1 11.5 1 2 0.042 1.9e+02 2.7 0.8 49 135 108 145 95 182 0.47 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP004067_00039 - 329 0.48 11.1 11.5 2 2 8.9e-05 0.4 11.4 4.6 49 117 225 307 205 328 0.69 Apoptosis antagonizing transcription factor TrbL PF04610.14 215 CP004067_00040 - 331 2.1e-30 106.1 33.3 1 2 4.7e-34 2.1e-30 106.1 33.3 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP004067_00040 - 331 2.1e-30 106.1 33.3 2 2 0.59 2.6e+03 -2.1 0.1 58 88 289 325 260 330 0.47 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP004067_00040 - 331 0.069 13.0 1.0 1 2 0.54 2.4e+03 -1.6 0.1 39 51 70 82 61 114 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP004067_00040 - 331 0.069 13.0 1.0 2 2 5e-05 0.23 11.3 0.1 37 81 243 287 222 298 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 CP004067_00040 - 331 0.17 11.9 0.0 1 1 6.8e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) AIM3 PF17096.5 88 CP004067_00040 - 331 0.3 12.1 6.0 1 1 0.00013 0.57 11.1 6.0 9 38 299 328 284 330 0.89 Altered inheritance of mitochondria protein 3 La_HTH_kDCL PF18177.1 90 CP004067_00041 - 54 0.2 12.0 0.0 1 1 1.2e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain VirB8 PF04335.13 214 CP004067_00042 - 219 1.6e-52 178.5 0.5 1 1 2e-56 1.8e-52 178.3 0.5 4 214 10 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 CP004067_00042 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 CP004067_00043 - 298 9.6e-56 188.8 1.9 1 1 8.4e-60 1.5e-55 188.2 1.9 2 211 32 273 31 273 0.92 Conjugal transfer protein TrbI PF03743.14 187 CP004067_00044 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.5e+03 -3.4 0.3 136 154 141 166 120 174 0.53 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 CP004067_00044 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP004067_00044 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease T2SSE PF00437.20 273 CP004067_00045 - 339 6.9e-55 186.0 0.0 1 1 1.4e-57 8.1e-55 185.8 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP004067_00045 - 339 7.2e-05 23.3 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP004067_00045 - 339 0.00012 21.6 0.0 1 1 3.2e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP004067_00045 - 339 0.00028 20.4 0.0 1 1 9.2e-07 0.00052 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP004067_00045 - 339 0.0014 18.9 0.0 1 1 4.7e-06 0.0026 18.0 0.0 5 56 160 221 155 244 0.72 AAA domain DEAD PF00270.29 176 CP004067_00045 - 339 0.0014 18.4 0.0 1 1 4.1e-06 0.0023 17.7 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 CP004067_00045 - 339 0.0026 17.5 0.2 1 1 9.7e-06 0.0054 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 CP004067_00045 - 339 0.0035 17.3 0.0 1 1 1.3e-05 0.0073 16.3 0.0 10 45 152 186 141 194 0.74 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP004067_00045 - 339 0.0055 15.7 0.0 1 1 1.4e-05 0.0079 15.1 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 CP004067_00045 - 339 0.0073 16.2 0.0 1 1 2.3e-05 0.013 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP004067_00045 - 339 0.0088 15.4 0.0 1 1 2.6e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP004067_00045 - 339 0.0091 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 305 0.85 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 CP004067_00045 - 339 0.018 15.1 0.0 1 1 6.4e-05 0.036 14.2 0.0 27 48 164 185 142 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 CP004067_00045 - 339 0.021 13.8 0.0 1 1 6.2e-05 0.035 13.0 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 CP004067_00045 - 339 0.023 14.7 0.0 1 1 9.6e-05 0.054 13.5 0.0 5 50 147 186 135 248 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 CP004067_00045 - 339 0.024 14.4 0.0 1 1 9.2e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 CP004067_00045 - 339 0.026 14.2 0.0 1 1 9.8e-05 0.055 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 CP004067_00045 - 339 0.031 13.8 0.0 1 1 0.00011 0.061 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 CP004067_00045 - 339 0.035 14.2 0.1 1 1 0.00019 0.11 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 CP004067_00045 - 339 0.04 13.7 0.0 1 1 0.00011 0.064 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 CP004067_00045 - 339 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 CP004067_00045 - 339 0.046 13.0 0.0 1 1 0.00015 0.082 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin PRK PF00485.18 197 CP004067_00045 - 339 0.058 13.1 0.0 1 1 0.0002 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP004067_00045 - 339 0.065 11.9 0.0 1 1 0.00016 0.092 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP004067_00045 - 339 0.075 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 CP004067_00045 - 339 0.089 12.7 0.0 1 1 0.00036 0.2 11.5 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 CP004067_00045 - 339 0.089 12.7 0.4 1 1 0.00039 0.22 11.5 0.3 71 102 149 179 129 220 0.81 Microtubule binding NTPase_1 PF03266.15 168 CP004067_00045 - 339 0.11 12.4 0.1 1 1 0.00042 0.23 11.3 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 CP004067_00045 - 339 0.12 13.0 0.0 1 2 8.1 4.6e+03 -1.9 0.0 25 60 14 49 4 61 0.76 AAA domain AAA_18 PF13238.6 130 CP004067_00045 - 339 0.12 13.0 0.0 2 2 0.0007 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 CP004067_00045 - 339 0.15 11.7 0.0 1 1 0.00043 0.24 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP004067_00045 - 339 0.15 11.7 0.0 1 1 0.00044 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 CP004067_00045 - 339 0.38 11.2 4.1 1 2 2.7 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 CP004067_00045 - 339 0.38 11.2 4.1 2 2 0.00068 0.38 11.2 1.3 22 37 163 178 160 184 0.87 AAA domain Carbam_trans_N PF02543.15 338 CP004067_00046 - 267 0.053 13.2 0.0 1 1 4.1e-06 0.073 12.7 0.0 195 313 117 236 74 243 0.86 Carbamoyltransferase N-terminus T4SS-DNA_transf PF02534.14 469 CP004067_00047 - 603 8.3e-104 348.0 0.1 1 1 3.2e-107 1.1e-103 347.5 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP004067_00047 - 603 3.5e-24 85.2 0.0 1 1 1.9e-27 6.8e-24 84.3 0.0 2 125 406 528 405 529 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP004067_00047 - 603 3.2e-15 55.9 0.0 1 2 2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP004067_00047 - 603 3.2e-15 55.9 0.0 2 2 1.6e-13 5.8e-10 38.6 0.0 187 369 347 531 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 CP004067_00047 - 603 0.17 11.9 0.1 1 1 8.3e-05 0.3 11.2 0.1 37 93 9 87 3 100 0.78 Putative Actinobacterial Holin-X, holin superfamily III ECF_trnsprt PF12822.7 172 CP004067_00047 - 603 1.2 9.2 8.3 1 1 0.00056 2 8.5 8.3 101 168 4 79 1 81 0.85 ECF transporter, substrate-specific component Cag12 PF13117.6 97 CP004067_00048 - 143 1.4e-16 60.7 0.3 1 1 2.1e-20 1.9e-16 60.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 CP004067_00048 - 143 0.06 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 CP004067_00049 - 252 4.1e-38 130.8 2.0 1 1 2.9e-42 5.3e-38 130.4 2.0 1 154 25 190 25 192 0.88 TrbM PRELI PF04707.14 157 CP004067_00050 - 265 0.044 13.6 0.3 1 2 0.26 2.4e+03 -1.8 0.1 107 133 23 45 5 72 0.49 PRELI-like family PRELI PF04707.14 157 CP004067_00050 - 265 0.044 13.6 0.3 2 2 4.9e-06 0.044 13.6 0.3 96 155 83 147 78 149 0.87 PRELI-like family TACC_C PF05010.14 201 CP004067_00050 - 265 0.92 9.3 9.3 1 2 0.00027 2.4 7.9 8.2 14 124 2 111 1 135 0.79 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 CP004067_00050 - 265 0.92 9.3 9.3 2 2 0.035 3.2e+02 1.0 1.1 8 45 100 139 94 148 0.70 Transforming acidic coiled-coil-containing protein (TACC), C-terminal CdhD PF03599.16 386 CP004067_00051 - 246 0.002 16.9 0.0 1 1 5.3e-07 0.0031 16.3 0.0 269 358 39 127 30 136 0.86 CO dehydrogenase/acetyl-CoA synthase delta subunit Pox_RNA_pol PF03293.14 160 CP004067_00051 - 246 0.012 15.3 0.9 1 1 4.5e-06 0.027 14.2 0.9 35 158 20 138 7 140 0.83 Poxvirus DNA-directed RNA polymerase, 18 kD subunit Redoxin PF08534.10 147 CP004067_00051 - 246 0.059 13.1 0.5 1 2 0.079 4.7e+02 0.4 0.0 117 146 49 76 31 77 0.79 Redoxin Redoxin PF08534.10 147 CP004067_00051 - 246 0.059 13.1 0.5 2 2 7.9e-05 0.47 10.2 0.1 49 76 184 213 178 230 0.79 Redoxin DUF1461 PF07314.11 189 CP004067_00052 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) Topoisom_bac PF01131.20 413 CP004067_00053 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP004067_00053 - 730 6.3e-12 45.6 2.6 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP004067_00053 - 730 6.3e-12 45.6 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 CP004067_00053 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP004067_00053 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP004067_00053 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP004067_00053 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP004067_00053 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CP004067_00053 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP004067_00053 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CP004067_00053 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP004067_00053 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 CP004067_00053 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 CP004067_00053 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 CP004067_00053 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP004067_00053 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CP004067_00053 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP004067_00053 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 CP004067_00053 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 CP004067_00053 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP004067_00053 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 CP004067_00053 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP004067_00053 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP004067_00053 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 CP004067_00053 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 CP004067_00053 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 CP004067_00053 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP004067_00053 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 CP004067_00053 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 CP004067_00053 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 CP004067_00053 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 CP004067_00053 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 CP004067_00053 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 CP004067_00053 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 CP004067_00054 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP004067_00054 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain APH PF01636.23 240 CP004067_00056 - 306 5.8e-22 78.8 0.0 1 1 2.1e-25 7.5e-22 78.4 0.0 13 230 39 256 27 265 0.75 Phosphotransferase enzyme family RIO1 PF01163.22 188 CP004067_00056 - 306 2.1e-06 27.5 0.1 1 2 0.00064 2.3 7.8 0.0 47 111 52 117 46 131 0.76 RIO1 family RIO1 PF01163.22 188 CP004067_00056 - 306 2.1e-06 27.5 0.1 2 2 5.8e-07 0.0021 17.7 0.1 97 154 165 223 149 253 0.81 RIO1 family DUF1679 PF07914.11 414 CP004067_00056 - 306 0.00034 19.6 0.1 1 2 1 3.7e+03 -3.6 0.0 113 142 60 89 55 92 0.78 Protein of unknown function (DUF1679) DUF1679 PF07914.11 414 CP004067_00056 - 306 0.00034 19.6 0.1 2 2 1.6e-07 0.00056 18.9 0.0 213 318 134 238 102 253 0.70 Protein of unknown function (DUF1679) Choline_kinase PF01633.20 213 CP004067_00056 - 306 0.00076 19.1 0.2 1 2 5.9e-07 0.0021 17.7 0.1 21 171 61 218 46 219 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 CP004067_00056 - 306 0.00076 19.1 0.2 2 2 0.51 1.8e+03 -1.7 0.0 6 25 249 268 247 271 0.89 Choline/ethanolamine kinase EcKinase PF02958.20 294 CP004067_00056 - 306 0.0095 15.3 0.1 1 1 3.7e-06 0.013 14.8 0.1 189 270 162 243 121 262 0.65 Ecdysteroid kinase GTP_EFTU PF00009.27 194 CP004067_00057 - 639 5.6e-59 198.9 0.3 1 1 3.9e-62 7.8e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP004067_00057 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP004067_00057 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP004067_00057 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP004067_00057 - 639 2.1e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP004067_00057 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP004067_00057 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP004067_00057 - 639 0.0091 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP004067_00057 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP004067_00057 - 639 0.05 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family CPSF_A PF03178.15 322 CP004067_00059 - 95 0.034 13.4 0.0 1 1 9.6e-06 0.034 13.4 0.0 248 286 57 94 23 95 0.80 CPSF A subunit region ATPase PF06745.13 231 CP004067_00059 - 95 0.048 13.0 0.2 1 1 1.4e-05 0.049 13.0 0.2 73 152 7 87 1 94 0.74 KaiC TipAS PF07739.13 117 CP004067_00059 - 95 0.061 13.9 1.5 1 1 0.00033 1.2 9.7 1.9 27 96 5 80 1 92 0.80 TipAS antibiotic-recognition domain 3HCDH PF00725.22 97 CP004067_00059 - 95 0.091 13.4 0.2 1 1 3.8e-05 0.14 12.8 0.2 7 65 36 93 33 95 0.91 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DUF4942 PF13708.6 199 CP004067_00059 - 95 0.15 12.0 0.0 1 1 7.1e-05 0.26 11.3 0.0 22 74 36 87 33 93 0.88 Domain of unknown function (DUF4942) PNP_UDP_1 PF01048.20 234 CP004067_00060 - 256 7.6e-29 100.6 0.0 1 1 4.8e-33 8.7e-29 100.4 0.0 3 219 34 237 32 255 0.86 Phosphorylase superfamily DUF4111 PF13427.6 103 CP004067_00061 - 218 3.1e-17 62.6 0.0 1 3 0.56 2.5e+03 -1.3 0.0 60 80 3 23 2 25 0.81 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 CP004067_00061 - 218 3.1e-17 62.6 0.0 2 3 1.5 6.8e+03 -2.7 0.0 8 22 52 66 50 72 0.73 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 CP004067_00061 - 218 3.1e-17 62.6 0.0 3 3 3.9e-20 1.8e-16 60.2 0.0 1 67 148 214 148 217 0.97 Domain of unknown function (DUF4111) Polbeta PF18765.1 93 CP004067_00061 - 218 8.7e-10 38.6 0.0 1 2 8.5e-13 3.8e-09 36.5 0.0 8 74 22 92 11 97 0.77 Polymerase beta, Nucleotidyltransferase Polbeta PF18765.1 93 CP004067_00061 - 218 8.7e-10 38.6 0.0 2 2 0.33 1.5e+03 -0.6 0.0 17 42 103 134 98 153 0.72 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 95 CP004067_00061 - 218 2.4e-06 27.8 0.0 1 1 1e-09 4.5e-06 26.9 0.0 14 76 25 89 11 107 0.76 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 199 CP004067_00061 - 218 0.00015 21.7 0.0 1 1 4.6e-08 0.00021 21.3 0.0 88 138 21 71 2 84 0.86 Adenylate cyclase NT domain DUF4111 PF13427.6 103 CP004067_00062 - 55 0.0023 18.0 0.0 1 1 1.5e-07 0.0027 17.9 0.0 69 103 13 47 7 47 0.95 Domain of unknown function (DUF4111) AAA_18 PF13238.6 130 CP004067_00063 - 181 5.7e-14 52.8 0.0 1 1 1.6e-16 7.6e-14 52.4 0.0 1 124 7 135 7 141 0.86 AAA domain CPT PF07931.12 174 CP004067_00063 - 181 3e-09 37.0 0.0 1 1 1.2e-11 5.8e-09 36.0 0.0 1 172 4 172 4 174 0.81 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 CP004067_00063 - 181 6.4e-09 36.1 0.0 1 1 1.9e-11 9.4e-09 35.6 0.0 2 136 7 144 6 146 0.81 AAA domain Zeta_toxin PF06414.12 199 CP004067_00063 - 181 1.5e-08 34.2 0.0 1 1 7.5e-11 3.6e-08 32.9 0.0 18 162 6 140 2 174 0.78 Zeta toxin AAA PF00004.29 132 CP004067_00063 - 181 8.7e-06 26.2 0.2 1 2 1.7e-07 8.1e-05 23.1 0.0 2 34 8 41 7 83 0.78 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP004067_00063 - 181 8.7e-06 26.2 0.2 2 2 0.71 3.5e+02 1.6 0.0 104 131 108 135 56 136 0.84 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 163 CP004067_00063 - 181 0.0001 22.6 0.1 1 2 8.3e-07 0.0004 20.7 0.0 2 62 7 71 6 85 0.62 AAA domain AAA_28 PF13521.6 163 CP004067_00063 - 181 0.0001 22.6 0.1 2 2 2.6 1.2e+03 -0.4 0.1 137 137 133 133 91 177 0.52 AAA domain AAA_17 PF13207.6 136 CP004067_00063 - 181 0.0002 21.8 0.0 1 1 7.1e-07 0.00035 21.0 0.0 1 128 10 131 10 139 0.78 AAA domain AAA_22 PF13401.6 137 CP004067_00063 - 181 0.00034 20.9 0.0 1 2 2e-06 0.00099 19.4 0.0 4 33 3 32 1 84 0.83 AAA domain AAA_22 PF13401.6 137 CP004067_00063 - 181 0.00034 20.9 0.0 2 2 3.7 1.8e+03 -0.9 0.0 62 83 121 141 96 178 0.64 AAA domain AAA_14 PF13173.6 131 CP004067_00063 - 181 0.00043 20.3 0.0 1 1 1.4e-06 0.00066 19.7 0.0 2 127 4 141 3 145 0.72 AAA domain RuvB_N PF05496.12 159 CP004067_00063 - 181 0.0016 18.2 0.1 1 2 1.2e-05 0.0057 16.4 0.0 36 60 7 31 3 49 0.85 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 CP004067_00063 - 181 0.0016 18.2 0.1 2 2 3.1 1.5e+03 -1.2 0.0 96 114 111 129 104 167 0.72 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 146 CP004067_00063 - 181 0.0024 18.2 0.0 1 1 8.6e-06 0.0042 17.4 0.0 9 35 3 29 1 77 0.87 AAA domain ABC_tran PF00005.27 137 CP004067_00063 - 181 0.0031 18.0 0.1 1 1 8.5e-06 0.0041 17.6 0.1 9 43 2 35 1 133 0.85 ABC transporter AAA_16 PF13191.6 170 CP004067_00063 - 181 0.0045 17.4 0.0 1 1 1.9e-05 0.0092 16.4 0.0 22 62 2 43 1 76 0.75 AAA ATPase domain KTI12 PF08433.10 272 CP004067_00063 - 181 0.0048 16.4 0.0 1 2 2e-05 0.0095 15.4 0.0 3 42 6 44 5 87 0.74 Chromatin associated protein KTI12 KTI12 PF08433.10 272 CP004067_00063 - 181 0.0048 16.4 0.0 2 2 4.5 2.2e+03 -2.2 0.0 263 263 137 137 104 174 0.57 Chromatin associated protein KTI12 DUF2075 PF09848.9 363 CP004067_00063 - 181 0.005 16.1 0.2 1 1 1.6e-05 0.0077 15.5 0.1 2 29 5 32 4 68 0.84 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.20 158 CP004067_00063 - 181 0.0076 16.2 0.0 1 2 0.00023 0.11 12.3 0.0 1 79 3 84 3 111 0.64 Adenylylsulphate kinase APS_kinase PF01583.20 158 CP004067_00063 - 181 0.0076 16.2 0.0 2 2 0.37 1.8e+02 1.9 0.0 44 74 118 148 98 155 0.85 Adenylylsulphate kinase AAA_30 PF13604.6 192 CP004067_00063 - 181 0.0092 15.7 0.1 1 1 3.2e-05 0.016 15.0 0.1 17 40 3 26 1 39 0.82 AAA domain AAA_24 PF13479.6 197 CP004067_00063 - 181 0.0096 15.7 0.3 1 1 2e-05 0.0097 15.6 0.3 3 23 5 30 3 171 0.85 AAA domain Ploopntkinase1 PF18748.1 196 CP004067_00063 - 181 0.0099 15.4 0.0 1 2 0.087 42 3.6 0.0 16 41 3 28 1 41 0.82 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 CP004067_00063 - 181 0.0099 15.4 0.0 2 2 0.00091 0.44 10.0 0.0 93 164 72 143 54 154 0.81 P-loop Nucleotide Kinase1 T2SSE PF00437.20 273 CP004067_00063 - 181 0.011 14.8 0.0 1 1 3.4e-05 0.016 14.3 0.0 130 158 5 33 1 75 0.82 Type II/IV secretion system protein ATPase PF06745.13 231 CP004067_00063 - 181 0.011 15.1 1.2 1 2 3.6e-05 0.017 14.5 0.1 18 37 3 22 1 35 0.87 KaiC ATPase PF06745.13 231 CP004067_00063 - 181 0.011 15.1 1.2 2 2 2.3 1.1e+03 -1.3 0.1 98 129 123 159 100 175 0.49 KaiC Rad17 PF03215.15 186 CP004067_00063 - 181 0.012 15.5 0.0 1 2 8.1e-05 0.039 13.9 0.0 45 71 4 30 1 40 0.88 Rad17 P-loop domain Rad17 PF03215.15 186 CP004067_00063 - 181 0.012 15.5 0.0 2 2 3.2 1.5e+03 -1.1 0.0 113 146 110 145 96 169 0.62 Rad17 P-loop domain SRP54 PF00448.22 196 CP004067_00063 - 181 0.016 14.8 0.1 1 1 6.3e-05 0.031 13.9 0.1 3 40 6 42 4 49 0.84 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 168 CP004067_00063 - 181 0.021 14.7 1.0 1 2 0.0001 0.049 13.5 0.3 2 22 7 27 6 35 0.85 NTPase NTPase_1 PF03266.15 168 CP004067_00063 - 181 0.021 14.7 1.0 2 2 2.1 1e+03 -0.5 0.0 115 136 97 118 58 172 0.59 NTPase dNK PF01712.19 204 CP004067_00063 - 181 0.034 14.0 0.2 1 2 0.0019 0.94 9.3 0.0 1 52 7 75 7 77 0.66 Deoxynucleoside kinase dNK PF01712.19 204 CP004067_00063 - 181 0.034 14.0 0.2 2 2 0.19 94 2.8 0.2 118 162 102 143 92 175 0.70 Deoxynucleoside kinase Sigma54_activat PF00158.26 168 CP004067_00063 - 181 0.035 13.8 0.0 1 1 0.00014 0.066 12.9 0.0 25 68 7 57 1 89 0.76 Sigma-54 interaction domain TIP49 PF06068.13 351 CP004067_00063 - 181 0.035 13.3 0.2 1 2 0.00023 0.11 11.6 0.0 50 77 4 31 1 46 0.84 TIP49 P-loop domain TIP49 PF06068.13 351 CP004067_00063 - 181 0.035 13.3 0.2 2 2 1.4 7e+02 -0.8 0.1 148 178 126 156 105 172 0.75 TIP49 P-loop domain ATPase_2 PF01637.18 233 CP004067_00063 - 181 0.039 13.8 0.3 1 2 0.0045 2.2 8.2 0.0 19 49 3 32 1 50 0.75 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 CP004067_00063 - 181 0.039 13.8 0.3 2 2 0.085 41 4.0 0.1 48 97 102 150 92 179 0.53 ATPase domain predominantly from Archaea DnaB_C PF03796.15 255 CP004067_00063 - 181 0.06 12.7 0.4 1 2 0.00026 0.13 11.6 0.0 17 47 2 32 1 42 0.83 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP004067_00063 - 181 0.06 12.7 0.4 2 2 2.6 1.3e+03 -1.5 0.1 84 91 136 143 98 179 0.39 DnaB-like helicase C terminal domain MKT1_N PF12247.8 90 CP004067_00063 - 181 0.069 13.5 0.0 1 1 0.00057 0.28 11.6 0.0 14 51 39 74 36 147 0.88 Temperature dependent protein affecting M2 dsRNA replication AAA_11 PF13086.6 261 CP004067_00063 - 181 0.073 12.8 1.5 1 1 0.00025 0.12 12.1 1.5 16 42 3 29 1 179 0.85 AAA domain PhoH PF02562.16 205 CP004067_00063 - 181 0.076 12.5 0.1 1 1 0.0003 0.14 11.5 0.1 18 49 3 34 1 36 0.84 PhoH-like protein RNA_helicase PF00910.22 107 CP004067_00063 - 181 0.089 13.2 0.0 1 1 0.00032 0.16 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase NACHT PF05729.12 166 CP004067_00063 - 181 0.1 12.5 0.0 1 1 0.00036 0.17 11.8 0.0 1 40 5 45 5 73 0.78 NACHT domain ATP-synt_ab PF00006.25 213 CP004067_00063 - 181 0.14 11.8 0.0 1 1 0.00028 0.14 11.8 0.0 13 45 3 34 1 178 0.82 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 181 CP004067_00063 - 181 0.18 11.3 0.7 1 2 0.00058 0.28 10.7 0.1 31 63 2 34 1 46 0.80 P-loop containing dynein motor region AAA_7 PF12775.7 181 CP004067_00063 - 181 0.18 11.3 0.7 2 2 8.9 4.3e+03 -3.0 0.0 65 82 156 173 132 176 0.64 P-loop containing dynein motor region Cytidylate_kin2 PF13189.6 179 CP004067_00063 - 181 0.2 11.8 1.5 1 2 0.038 19 5.4 0.1 1 23 6 28 6 36 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 CP004067_00063 - 181 0.2 11.8 1.5 2 2 0.026 12 5.9 0.1 108 147 99 138 28 143 0.73 Cytidylate kinase-like family APH PF01636.23 240 CP004067_00064 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 CP004067_00064 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 CP004067_00064 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 CP004067_00064 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 CP004067_00064 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 CP004067_00064 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 CP004067_00065 - 139 2.2e-51 174.9 0.1 1 1 1.4e-55 2.4e-51 174.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase Adenyl_transf PF04439.12 279 CP004067_00066 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 CP004067_00067 - 180 3.8e-20 72.3 0.1 1 1 2.3e-23 5.3e-20 71.8 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 CP004067_00067 - 180 1.2e-13 51.2 0.1 1 1 9.1e-17 2e-13 50.5 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 CP004067_00067 - 180 2.7e-12 46.7 0.0 1 1 1.6e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 CP004067_00067 - 180 1.1e-09 38.6 1.1 1 1 6e-13 1.3e-09 38.3 1.1 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 CP004067_00067 - 180 0.0011 19.7 0.0 1 1 6.1e-07 0.0014 19.4 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 CP004067_00067 - 180 0.0011 19.0 0.0 1 1 1.2e-06 0.0027 17.8 0.0 6 58 79 130 73 132 0.85 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 CP004067_00067 - 180 0.015 15.4 0.0 1 1 2.6e-05 0.059 13.5 0.0 21 126 50 154 43 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 CP004067_00067 - 180 0.038 14.0 0.0 1 1 2.9e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein APH PF01636.23 240 CP004067_00068 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 CP004067_00068 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 CP004067_00068 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 CP004067_00068 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family zf-HC2 PF13490.6 35 CP004067_00069 - 221 3.2e-06 27.3 2.7 1 1 1.2e-09 6.9e-06 26.2 2.7 4 35 11 42 9 42 0.97 Putative zinc-finger Glyco_hydro_100 PF12899.7 435 CP004067_00069 - 221 0.11 11.1 0.0 1 2 5.6e-05 0.34 9.5 0.0 29 75 3 50 1 72 0.86 Alkaline and neutral invertase Glyco_hydro_100 PF12899.7 435 CP004067_00069 - 221 0.11 11.1 0.0 2 2 0.094 5.6e+02 -1.1 0.0 265 319 107 163 99 169 0.82 Alkaline and neutral invertase TetR_C_11 PF16859.5 113 CP004067_00069 - 221 0.15 12.4 0.7 1 1 3.5e-05 0.21 11.9 0.7 12 111 12 110 11 112 0.88 Tetracyclin repressor-like, C-terminal domain Sigma70_r4_2 PF08281.12 54 CP004067_00070 - 150 2.5e-07 30.3 0.0 1 1 6.3e-11 3.8e-07 29.7 0.0 1 54 87 140 87 140 0.97 Sigma-70, region 4 Sigma70_r4 PF04545.16 50 CP004067_00070 - 150 3.8e-06 26.3 0.0 1 1 1.1e-09 6.3e-06 25.6 0.0 1 48 93 140 93 142 0.93 Sigma-70, region 4 HTH_38 PF13936.6 44 CP004067_00070 - 150 0.021 14.6 0.0 1 1 6.9e-06 0.041 13.6 0.0 3 33 95 125 93 126 0.92 Helix-turn-helix domain W2 PF02020.18 79 CP007180_00001 - 430 0.049 13.8 0.0 1 1 7.6e-06 0.14 12.3 0.0 38 77 344 404 341 406 0.86 eIF4-gamma/eIF5/eIF2-epsilon Lip_prot_lig_C PF10437.9 85 CP007180_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 CP007180_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 CP007180_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP007180_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 CP007180_00003 - 87 0.0072 15.7 2.9 1 2 0.55 9.8e+03 -3.9 0.1 30 45 5 9 2 10 0.51 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CP007180_00003 - 87 0.0072 15.7 2.9 2 2 4e-07 0.0072 15.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Y1_Tnp PF01797.16 121 CP007180_00004 - 142 4e-36 123.8 1.9 1 1 7.8e-40 4.7e-36 123.6 1.9 2 121 19 141 18 141 0.97 Transposase IS200 like Symplekin_C PF12295.8 186 CP007180_00004 - 142 0.042 14.0 0.2 1 1 8.2e-06 0.049 13.7 0.2 76 162 43 128 7 138 0.75 Symplekin tight junction protein C terminal DUF4974 PF16344.5 70 CP007180_00004 - 142 0.47 10.5 3.6 1 2 1.7 1e+04 -3.4 0.1 32 44 4 16 3 18 0.74 Domain of unknown function (DUF4974) DUF4974 PF16344.5 70 CP007180_00004 - 142 0.47 10.5 3.6 2 2 2.6e-05 0.16 12.0 1.0 6 67 41 101 39 104 0.90 Domain of unknown function (DUF4974) OrfB_Zn_ribbon PF07282.11 69 CP007180_00005 - 399 3.2e-21 75.0 0.5 1 1 3.1e-24 6.9e-21 73.9 0.5 1 68 287 356 287 357 0.97 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 47 CP007180_00005 - 399 2.4e-20 71.7 1.5 1 1 2.2e-23 4.8e-20 70.8 1.5 1 45 1 44 1 46 0.96 Helix-turn-helix domain OrfB_IS605 PF01385.19 120 CP007180_00005 - 399 7.6e-20 71.3 2.2 1 1 8.5e-23 1.9e-19 70.0 2.2 4 117 162 273 159 276 0.93 Probable transposase HypA PF01155.19 112 CP007180_00005 - 399 0.19 11.7 0.7 1 1 0.00019 0.42 10.6 0.7 66 96 311 344 211 355 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ACC PF17848.1 26 CP007180_00005 - 399 0.32 11.1 1.5 1 1 0.00057 1.3 9.2 1.5 4 26 318 340 318 340 0.99 Acetyl-coA carboxylase zinc finger domain zf-ribbon_3 PF13248.6 26 CP007180_00005 - 399 2.3 7.7 5.7 1 3 0.0086 19 4.8 0.3 16 23 315 322 313 325 0.67 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP007180_00005 - 399 2.3 7.7 5.7 2 3 0.0074 16 5.0 0.1 4 10 336 342 333 348 0.80 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP007180_00005 - 399 2.3 7.7 5.7 3 3 3.1 6.9e+03 -3.3 0.1 7 10 387 390 386 391 0.54 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 CP007180_00005 - 399 3.9 7.5 5.0 1 2 0.0014 3.2 7.8 2.0 14 44 311 341 308 343 0.81 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 CP007180_00005 - 399 3.9 7.5 5.0 2 2 0.036 81 3.3 1.6 19 32 335 348 326 391 0.77 Transposase zinc-ribbon domain Ima1_N PF09779.9 135 CP007180_00005 - 399 5 8.0 7.5 1 3 0.36 8e+02 0.9 0.7 66 118 54 100 29 112 0.58 Ima1 N-terminal domain Ima1_N PF09779.9 135 CP007180_00005 - 399 5 8.0 7.5 2 3 0.93 2.1e+03 -0.5 0.1 65 95 113 156 84 168 0.54 Ima1 N-terminal domain Ima1_N PF09779.9 135 CP007180_00005 - 399 5 8.0 7.5 3 3 0.00076 1.7 9.5 0.7 3 38 318 353 317 383 0.86 Ima1 N-terminal domain LysE PF01810.18 193 CP007180_00006 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 CP007180_00006 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP007180_00006 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 CP007180_00006 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 CP007180_00006 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 CP007180_00006 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 CP007180_00006 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 CP007180_00006 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 CP007180_00006 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP007180_00006 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP007180_00006 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 CP007180_00006 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 CP007180_00007 - 49 0.0042 16.6 1.2 1 1 3.3e-07 0.0059 16.1 1.2 9 32 17 40 15 41 0.89 Protein of unknown function (DUF4044) NPA PF16469.5 123 CP007180_00008 - 91 0.057 14.0 6.1 1 1 3.3e-06 0.06 13.9 6.1 17 103 3 89 1 91 0.87 Nematode polyprotein allergen ABA-1 Papo_T_antigen PF02380.15 93 CP007180_00009 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP007180_00009 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 CP007180_00010 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP007180_00010 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP007180_00010 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP007180_00010 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP007180_00010 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP007180_00010 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 CP007180_00011 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 CP007180_00012 - 1931 1.7e-16 59.9 1.2 1 3 1.1e-19 4e-16 58.7 0.1 56 245 1016 1272 934 1313 0.73 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP007180_00012 - 1931 1.7e-16 59.9 1.2 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP007180_00012 - 1931 1.7e-16 59.9 1.2 3 3 1.2 4.4e+03 -3.9 0.0 173 197 1879 1904 1860 1921 0.71 SNF2 family N-terminal domain ResIII PF04851.15 171 CP007180_00012 - 1931 7.5e-08 32.6 8.9 1 3 2.3 8.1e+03 -3.3 0.2 54 75 648 691 638 783 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP007180_00012 - 1931 7.5e-08 32.6 8.9 2 3 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP007180_00012 - 1931 7.5e-08 32.6 8.9 3 3 0.41 1.5e+03 -0.9 5.7 35 121 1799 1903 1746 1930 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP007180_00012 - 1931 9.6e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP007180_00012 - 1931 9.6e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP007180_00012 - 1931 6.3e-06 26.1 1.8 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 CP007180_00012 - 1931 6.3e-06 26.1 1.8 2 2 0.086 3.1e+02 1.0 0.0 119 155 1882 1923 1826 1929 0.76 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP007180_00012 - 1931 1.5e-05 25.5 0.7 1 2 4.3e-08 0.00015 22.2 0.2 3 103 371 471 369 474 0.79 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP007180_00012 - 1931 1.5e-05 25.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 660 699 644 718 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 CP007180_00013 - 226 1.1e-09 38.9 1.0 1 1 2.6e-13 4.7e-09 36.9 1.0 49 120 123 195 4 216 0.83 NYN domain HTH_19 PF12844.7 65 CP007180_00014 - 314 7.3e-06 25.9 0.1 1 2 0.0025 4.5 7.4 0.0 11 31 9 29 1 41 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 CP007180_00014 - 314 7.3e-06 25.9 0.1 2 2 6.7e-06 0.012 15.6 0.0 28 64 117 152 98 153 0.91 Helix-turn-helix domain HTH_3 PF01381.22 55 CP007180_00014 - 314 7.9e-06 25.8 0.0 1 2 3.2e-07 0.00057 19.9 0.0 2 29 3 30 2 30 0.89 Helix-turn-helix HTH_3 PF01381.22 55 CP007180_00014 - 314 7.9e-06 25.8 0.0 2 2 0.041 74 3.5 0.0 26 55 118 147 109 147 0.90 Helix-turn-helix Phage_CI_repr PF07022.13 65 CP007180_00014 - 314 0.00077 19.5 0.0 1 2 2.5e-05 0.045 13.8 0.0 5 49 4 47 1 53 0.78 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 CP007180_00014 - 314 0.00077 19.5 0.0 2 2 0.056 1e+02 3.1 0.0 45 64 135 154 127 155 0.78 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 CP007180_00014 - 314 0.0073 15.8 0.0 1 2 5.5e-05 0.099 12.2 0.0 17 34 10 27 10 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP007180_00014 - 314 0.0073 15.8 0.0 2 2 0.21 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 CP007180_00014 - 314 0.0088 16.1 0.0 1 2 1.7e-05 0.03 14.5 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain HTH_28 PF13518.6 52 CP007180_00014 - 314 0.0088 16.1 0.0 2 2 3.4 6.2e+03 -2.6 0.0 6 21 44 59 42 67 0.63 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 CP007180_00014 - 314 0.01 15.7 0.2 1 2 1.6e-05 0.028 14.3 0.0 2 36 3 37 2 49 0.79 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 CP007180_00014 - 314 0.01 15.7 0.2 2 2 3.5 6.2e+03 -2.8 0.1 38 47 290 299 289 300 0.85 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 CP007180_00014 - 314 0.017 14.9 0.0 1 2 2.7e-05 0.049 13.4 0.0 16 37 7 30 1 36 0.87 Homeodomain-like domain HTH_23 PF13384.6 50 CP007180_00014 - 314 0.017 14.9 0.0 2 2 2.6 4.7e+03 -2.4 0.0 35 49 54 67 53 67 0.81 Homeodomain-like domain Sigma70_r4_2 PF08281.12 54 CP007180_00014 - 314 0.026 14.2 0.0 1 1 3.1e-05 0.055 13.1 0.0 25 46 9 30 6 30 0.93 Sigma-70, region 4 HTH_31 PF13560.6 64 CP007180_00014 - 314 0.064 13.6 0.0 1 1 6.8e-05 0.12 12.7 0.0 13 33 9 29 3 38 0.89 Helix-turn-helix domain CENP-B_N PF04218.13 53 CP007180_00014 - 314 0.073 12.7 0.0 1 2 0.00019 0.35 10.5 0.0 22 44 10 32 8 35 0.92 CENP-B N-terminal DNA-binding domain CENP-B_N PF04218.13 53 CP007180_00014 - 314 0.073 12.7 0.0 2 2 2 3.6e+03 -2.3 0.0 32 41 293 302 290 303 0.82 CENP-B N-terminal DNA-binding domain Relaxase PF03432.14 242 CP007180_00015 - 462 4.1e-10 39.7 7.6 1 2 2.3e-14 4.1e-10 39.7 7.6 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP007180_00015 - 462 4.1e-10 39.7 7.6 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 CP007180_00016 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP007180_00016 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP007180_00016 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP007180_00016 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP007180_00016 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP007180_00016 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP007180_00016 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 CP007180_00016 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP007180_00016 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 CP007180_00016 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP007180_00016 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain Sds3 PF08598.11 218 CP007180_00017 - 93 0.027 14.5 5.8 1 1 7.1e-06 0.032 14.3 5.8 45 97 7 62 5 88 0.83 Sds3-like CdvA PF18822.1 123 CP007180_00017 - 93 0.21 11.4 8.2 1 2 5.2e-05 0.23 11.3 5.3 18 48 6 36 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP007180_00017 - 93 0.21 11.4 8.2 2 2 0.071 3.2e+02 1.1 0.0 97 112 60 75 45 89 0.67 CdvA-like coiled-coil domain DUF3671 PF12420.8 115 CP007180_00017 - 93 4.6 7.3 14.1 1 2 0.029 1.3e+02 2.7 3.9 24 49 17 42 1 46 0.70 Protein of unknown function DUF3671 PF12420.8 115 CP007180_00017 - 93 4.6 7.3 14.1 2 2 9.4e-05 0.42 10.7 2.6 4 32 59 85 56 93 0.81 Protein of unknown function CdiI PF07262.11 156 CP007180_00017 - 93 8.8 6.1 12.2 1 1 0.0035 16 5.3 12.2 49 101 17 77 1 89 0.74 CDI immunity protein DUF2400 PF09674.10 227 CP007180_00019 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 CP007180_00019 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 CP007180_00020 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 CP007180_00020 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 CP007180_00020 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 CP007180_00020 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP007180_00020 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 CP007180_00021 - 48 0.0028 17.6 0.0 1 1 1.6e-07 0.0028 17.6 0.0 1 22 1 23 1 38 0.88 Protein of unknown function (DUF4223) Sdh_cyt PF01127.22 121 CP007180_00022 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 CP007180_00022 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 CP007180_00022 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 CP007180_00024 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 CP007180_00025 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 CP007180_00026 - 597 5.4e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 CP007180_00026 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP007180_00026 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP007180_00026 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP007180_00026 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 CP007180_00026 - 597 0.0088 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 CP007180_00026 - 597 0.0088 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 CP007180_00026 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP007180_00026 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 CP007180_00026 - 597 0.21 11.7 2.2 1 1 0.00042 1.1 9.4 2.2 1 29 35 63 35 536 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 CP007180_00026 - 597 0.37 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP007180_00026 - 597 0.37 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP007180_00026 - 597 0.37 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 CP007180_00027 - 339 1.3e-33 116.2 0.8 1 1 7.4e-37 2.2e-33 115.4 0.8 2 146 138 280 137 280 0.96 Resolvase, N terminal domain CRISPR_Cas2 PF09827.9 76 CP007180_00027 - 339 0.0016 18.5 0.0 1 1 5.5e-06 0.016 15.3 0.0 5 54 8 68 5 82 0.78 CRISPR associated protein Cas2 PAS_11 PF14598.6 113 CP007180_00027 - 339 0.0032 17.6 1.2 1 2 7.7e-06 0.023 14.8 0.4 28 110 88 170 79 171 0.89 PAS domain PAS_11 PF14598.6 113 CP007180_00027 - 339 0.0032 17.6 1.2 2 2 0.2 5.9e+02 0.6 0.0 28 48 300 320 292 328 0.81 PAS domain Occludin_ELL PF07303.13 101 CP007180_00027 - 339 0.12 13.1 9.1 1 2 2.7 8.1e+03 -2.4 0.0 47 47 51 51 14 81 0.54 Occludin homology domain Occludin_ELL PF07303.13 101 CP007180_00027 - 339 0.12 13.1 9.1 2 2 1.4e-05 0.043 14.5 6.0 4 90 100 195 98 197 0.91 Occludin homology domain HTH_38 PF13936.6 44 CP007180_00027 - 339 0.2 11.5 1.5 1 3 4.3 1.3e+04 -3.9 0.1 8 19 182 193 182 196 0.76 Helix-turn-helix domain HTH_38 PF13936.6 44 CP007180_00027 - 339 0.2 11.5 1.5 2 3 0.0073 22 4.9 0.0 3 35 253 286 252 289 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 CP007180_00027 - 339 0.2 11.5 1.5 3 3 0.01 31 4.5 0.0 11 26 297 312 293 315 0.88 Helix-turn-helix domain Pox_A_type_inc PF04508.12 23 CP007180_00027 - 339 6.5 6.8 6.9 1 2 2.1 6.4e+03 -2.7 0.2 1 12 148 159 148 159 0.75 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP007180_00027 - 339 6.5 6.8 6.9 2 2 0.00032 0.97 9.4 2.1 4 17 181 194 181 196 0.92 Viral A-type inclusion protein repeat TrbC PF04956.13 99 CP007180_00029 - 87 1.5e-14 54.0 8.5 1 1 1.7e-18 1.6e-14 53.9 8.5 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP007180_00029 - 87 0.056 13.3 4.3 1 1 8.2e-06 0.073 12.9 4.2 76 135 35 87 12 87 0.71 Uncharacterized protein conserved in bacteria (DUF2062) VirB3 PF05101.13 84 CP007180_00030 - 53 2e-13 50.4 1.9 1 1 1.2e-17 2.1e-13 50.3 1.9 2 51 3 52 2 53 0.94 Type IV secretory pathway, VirB3-like protein CagE_TrbE_VirB PF03135.14 206 CP007180_00031 - 869 3.7e-51 174.2 0.6 1 1 9.3e-55 8.4e-51 173.0 0.6 2 206 224 429 223 429 0.98 CagE, TrbE, VirB family, component of type IV transporter system HNOBA PF07701.14 221 CP007180_00031 - 869 0.039 13.4 0.1 1 1 9.5e-06 0.085 12.3 0.1 53 153 571 791 569 802 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 CP007180_00032 - 185 3.1e-31 107.8 0.1 1 1 2.8e-35 5e-31 107.1 0.1 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) FapA PF03961.13 454 CP007180_00033 - 226 0.0039 15.9 6.9 1 1 1.3e-06 0.0039 15.9 6.9 332 412 3 89 1 140 0.82 Flagellar Assembly Protein A Ax_dynein_light PF10211.9 187 CP007180_00033 - 226 0.028 14.3 4.0 1 2 9.5e-06 0.028 14.3 4.0 121 182 3 64 1 69 0.87 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP007180_00033 - 226 0.028 14.3 4.0 2 2 0.26 7.8e+02 -0.1 1.0 116 116 194 194 128 226 0.55 Axonemal dynein light chain Fib_alpha PF08702.10 143 CP007180_00033 - 226 0.6 10.3 12.2 1 3 2e-05 0.061 13.5 4.9 30 97 3 67 1 87 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP007180_00033 - 226 0.6 10.3 12.2 2 3 0.84 2.5e+03 -1.4 0.0 82 121 109 149 79 160 0.62 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP007180_00033 - 226 0.6 10.3 12.2 3 3 0.2 6.1e+02 0.5 0.2 34 56 196 218 178 225 0.65 Fibrinogen alpha/beta chain family DivIC PF04977.15 80 CP007180_00033 - 226 1.7 8.4 11.6 1 3 0.00031 0.92 9.3 2.0 21 52 5 36 2 48 0.84 Septum formation initiator DivIC PF04977.15 80 CP007180_00033 - 226 1.7 8.4 11.6 2 3 0.011 32 4.4 0.1 35 65 55 85 40 86 0.82 Septum formation initiator DivIC PF04977.15 80 CP007180_00033 - 226 1.7 8.4 11.6 3 3 0.47 1.4e+03 -0.9 0.5 21 41 194 214 188 223 0.73 Septum formation initiator Striatin PF08232.12 155 CP007180_00033 - 226 4.6 7.8 9.6 1 1 0.0047 14 6.2 9.6 29 88 5 69 3 225 0.72 Striatin family Syntaxin-6_N PF09177.11 99 CP007180_00033 - 226 9.3 6.9 10.2 1 2 0.00059 1.8 9.2 4.5 44 70 4 46 2 87 0.71 Syntaxin 6, N-terminal Syntaxin-6_N PF09177.11 99 CP007180_00033 - 226 9.3 6.9 10.2 2 2 0.58 1.7e+03 -0.4 0.3 47 47 196 196 140 225 0.54 Syntaxin 6, N-terminal SSB PF00436.25 104 CP007180_00035 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 CP007180_00036 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP007180_00036 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP007180_00036 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP007180_00036 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP007180_00036 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP007180_00036 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP007180_00036 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 CP007180_00037 - 218 3.9e-12 47.0 0.4 1 1 5.4e-16 4.8e-12 46.7 0.4 1 104 94 210 94 218 0.84 Type IV secretion system proteins GldM_N PF12081.8 194 CP007180_00037 - 218 0.033 14.3 0.5 1 1 6.1e-06 0.054 13.6 0.5 32 83 104 157 100 201 0.87 GldM N-terminal domain T4SS PF07996.11 197 CP007180_00038 - 104 3.3e-10 40.7 11.1 1 1 1.3e-13 3.8e-10 40.5 11.1 120 194 6 80 1 82 0.94 Type IV secretion system proteins AATF-Che1 PF13339.6 139 CP007180_00038 - 104 0.0044 17.7 2.4 1 1 1.7e-06 0.0052 17.5 2.4 52 119 10 91 2 100 0.73 Apoptosis antagonizing transcription factor DHR10 PF18595.1 117 CP007180_00038 - 104 0.023 14.7 5.2 1 1 1.1e-05 0.031 14.3 5.2 36 104 14 81 6 88 0.86 Designed helical repeat protein 10 domain Occludin_ELL PF07303.13 101 CP007180_00038 - 104 0.032 14.9 0.6 1 2 1.1e-05 0.032 14.9 0.6 17 71 6 59 4 70 0.85 Occludin homology domain Occludin_ELL PF07303.13 101 CP007180_00038 - 104 0.032 14.9 0.6 2 2 0.16 4.7e+02 1.6 0.2 3 20 76 93 74 94 0.87 Occludin homology domain VWA_2 PF13519.6 107 CP007180_00038 - 104 0.067 13.8 1.1 1 1 3.4e-05 0.1 13.3 0.8 41 84 2 52 1 77 0.86 von Willebrand factor type A domain Snapin_Pallidin PF14712.6 90 CP007180_00038 - 104 0.1 13.0 5.1 1 1 9.4e-05 0.28 11.6 5.1 30 83 21 75 8 82 0.88 Snapin/Pallidin TrbL PF04610.14 215 CP007180_00039 - 332 8.7e-32 110.6 33.1 1 2 9.7e-36 8.7e-32 110.6 33.1 1 214 40 252 40 253 0.94 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP007180_00039 - 332 8.7e-32 110.6 33.1 2 2 0.5 4.5e+03 -2.8 0.1 84 84 290 290 260 328 0.50 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP007180_00039 - 332 0.029 14.2 1.4 1 2 0.33 2.9e+03 -1.9 0.1 39 50 71 82 62 110 0.55 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP007180_00039 - 332 0.029 14.2 1.4 2 2 6.2e-06 0.055 13.3 0.1 14 81 222 288 201 300 0.67 T-cell leukemia translocation-altered Trep_dent_lipo PF09710.10 397 CP007180_00040 - 54 0.034 13.1 1.0 1 1 5.2e-06 0.031 13.2 1.0 3 25 3 24 1 53 0.80 Treponema clustered lipoprotein (Trep_dent_lipo) La_HTH_kDCL PF18177.1 90 CP007180_00040 - 54 0.19 12.0 0.0 1 1 3.6e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain PsbT PF01405.17 29 CP007180_00040 - 54 1.1 9.1 5.2 1 1 0.00027 1.6 8.6 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 CP007180_00041 - 219 1.6e-52 178.5 0.5 1 1 1.9e-56 1.7e-52 178.4 0.5 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 CP007180_00041 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 CP007180_00042 - 296 4.2e-56 190.0 1.7 1 1 1.1e-59 6.7e-56 189.3 1.7 2 211 31 271 30 271 0.92 Conjugal transfer protein TraE PF05309.11 182 CP007180_00042 - 296 0.022 14.2 0.1 1 1 6.6e-06 0.039 13.3 0.1 107 171 89 154 86 161 0.83 TraE protein Rho_RNA_bind PF07497.12 73 CP007180_00042 - 296 0.068 13.0 0.0 1 2 1.5 9.2e+03 -3.4 0.0 9 22 79 92 76 97 0.79 Rho termination factor, RNA-binding domain Rho_RNA_bind PF07497.12 73 CP007180_00042 - 296 0.068 13.0 0.0 2 2 3.3e-05 0.2 11.6 0.0 21 49 241 269 232 288 0.84 Rho termination factor, RNA-binding domain TrbI PF03743.14 187 CP007180_00043 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.4e+03 -3.4 0.3 136 154 140 166 120 172 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 CP007180_00043 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP007180_00043 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease T2SSE PF00437.20 273 CP007180_00044 - 335 1.5e-54 184.9 0.0 1 1 3.1e-57 1.7e-54 184.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP007180_00044 - 335 7e-05 23.4 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP007180_00044 - 335 0.00011 21.6 0.0 1 1 3.1e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP007180_00044 - 335 0.00029 20.4 0.0 1 1 9.1e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP007180_00044 - 335 0.0014 18.9 0.0 1 1 4.6e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 CP007180_00044 - 335 0.0014 18.4 0.0 1 1 4e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 CP007180_00044 - 335 0.0025 17.6 0.0 1 1 9.5e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 CP007180_00044 - 335 0.0035 17.3 0.0 1 1 1.3e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP007180_00044 - 335 0.0055 15.7 0.0 1 1 1.4e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 CP007180_00044 - 335 0.0073 16.2 0.0 1 1 2.2e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP007180_00044 - 335 0.0087 15.4 0.0 1 1 2.5e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP007180_00044 - 335 0.0092 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 CP007180_00044 - 335 0.019 15.1 0.0 1 1 6.3e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 CP007180_00044 - 335 0.021 13.8 0.0 1 1 6.1e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 CP007180_00044 - 335 0.022 14.8 0.1 1 1 9.7e-05 0.054 13.5 0.0 5 50 147 186 135 244 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 CP007180_00044 - 335 0.024 14.4 0.0 1 1 9e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 CP007180_00044 - 335 0.026 14.2 0.0 1 1 9.6e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 CP007180_00044 - 335 0.037 13.5 0.0 1 1 0.00011 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 CP007180_00044 - 335 0.039 14.0 0.1 1 1 0.00019 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 CP007180_00044 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP007180_00044 - 335 0.046 13.0 0.0 1 1 0.00014 0.08 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin RNA_helicase PF00910.22 107 CP007180_00044 - 335 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase PRK PF00485.18 197 CP007180_00044 - 335 0.056 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP007180_00044 - 335 0.066 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP007180_00044 - 335 0.074 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 CP007180_00044 - 335 0.088 12.7 0.0 1 1 0.00035 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 CP007180_00044 - 335 0.097 12.6 0.5 1 1 0.00043 0.24 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 CP007180_00044 - 335 0.11 12.4 0.1 1 1 0.00041 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 CP007180_00044 - 335 0.13 12.8 0.1 1 1 0.00069 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 CP007180_00044 - 335 0.15 11.7 0.0 1 1 0.00042 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP007180_00044 - 335 0.15 11.8 0.0 1 1 0.00043 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 CP007180_00044 - 335 0.35 11.3 3.8 1 2 2.6 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 CP007180_00044 - 335 0.35 11.3 3.8 2 2 0.00066 0.37 11.3 1.3 22 37 163 178 160 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 CP007180_00045 - 603 1e-105 354.3 0.1 1 1 3.1e-109 1.4e-105 353.8 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP007180_00045 - 603 1.1e-24 86.8 0.0 1 1 4.9e-28 2.2e-24 85.8 0.0 2 125 406 528 405 529 0.88 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP007180_00045 - 603 6.5e-16 58.2 0.0 1 2 1.6e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP007180_00045 - 603 6.5e-16 58.2 0.0 2 2 2.7e-14 1.2e-10 40.9 0.0 187 370 347 532 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 CP007180_00045 - 603 0.2 11.7 0.2 1 1 7.7e-05 0.34 10.9 0.2 37 93 9 87 3 100 0.78 Putative Actinobacterial Holin-X, holin superfamily III Cag12 PF13117.6 97 CP007180_00046 - 143 2.9e-16 59.8 0.3 1 1 4.1e-20 3.7e-16 59.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 CP007180_00046 - 143 0.078 12.8 0.4 1 1 2.3e-05 0.2 11.4 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 CP007180_00047 - 183 1.1e-36 126.1 1.8 1 1 7.5e-41 1.3e-36 125.8 1.8 1 136 25 170 25 181 0.89 TrbM PRELI PF04707.14 157 CP007180_00048 - 266 0.03 14.1 2.2 1 2 0.49 1.8e+03 -1.4 0.1 122 129 35 42 4 73 0.51 PRELI-like family PRELI PF04707.14 157 CP007180_00048 - 266 0.03 14.1 2.2 2 2 9.1e-06 0.033 14.0 0.3 96 155 84 148 79 150 0.87 PRELI-like family TACC_C PF05010.14 201 CP007180_00048 - 266 2.4 7.9 10.1 1 2 0.0014 5 6.9 8.4 13 125 2 113 1 138 0.78 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 CP007180_00048 - 266 2.4 7.9 10.1 2 2 0.13 4.6e+02 0.5 3.0 8 45 101 140 90 181 0.55 Transforming acidic coiled-coil-containing protein (TACC), C-terminal NdhM PF10664.9 107 CP007180_00048 - 266 2.5 8.4 6.1 1 3 0.016 57 4.0 0.3 43 88 5 50 1 61 0.75 Cyanobacterial and plastid NDH-1 subunit M NdhM PF10664.9 107 CP007180_00048 - 266 2.5 8.4 6.1 2 3 0.023 82 3.5 0.8 32 78 91 136 88 152 0.77 Cyanobacterial and plastid NDH-1 subunit M NdhM PF10664.9 107 CP007180_00048 - 266 2.5 8.4 6.1 3 3 0.033 1.2e+02 3.0 0.1 61 94 137 170 124 175 0.81 Cyanobacterial and plastid NDH-1 subunit M IFT20 PF14931.6 119 CP007180_00048 - 266 4.8 7.4 10.0 1 3 0.15 5.2e+02 0.8 0.3 25 46 24 45 1 56 0.50 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 CP007180_00048 - 266 4.8 7.4 10.0 2 3 0.00036 1.3 9.2 0.8 25 54 90 119 80 127 0.89 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 CP007180_00048 - 266 4.8 7.4 10.0 3 3 0.04 1.4e+02 2.6 0.4 23 43 121 141 115 178 0.80 Intraflagellar transport complex B, subunit 20 Mod_r PF07200.13 146 CP007180_00048 - 266 8.2 6.5 12.0 1 2 0.024 85 3.2 9.1 10 135 15 161 2 165 0.62 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 CP007180_00048 - 266 8.2 6.5 12.0 2 2 0.47 1.7e+03 -1.0 0.0 65 88 207 230 204 259 0.71 Modifier of rudimentary (Mod(r)) protein CdhD PF03599.16 386 CP007180_00049 - 246 0.002 16.9 0.0 1 1 5.3e-07 0.0031 16.3 0.0 269 358 39 127 30 136 0.86 CO dehydrogenase/acetyl-CoA synthase delta subunit Pox_RNA_pol PF03293.14 160 CP007180_00049 - 246 0.012 15.3 0.9 1 1 4.5e-06 0.027 14.2 0.9 35 158 20 138 7 140 0.83 Poxvirus DNA-directed RNA polymerase, 18 kD subunit Redoxin PF08534.10 147 CP007180_00049 - 246 0.059 13.1 0.5 1 2 0.079 4.7e+02 0.4 0.0 117 146 49 76 31 77 0.79 Redoxin Redoxin PF08534.10 147 CP007180_00049 - 246 0.059 13.1 0.5 2 2 7.9e-05 0.47 10.2 0.1 49 76 184 213 178 230 0.79 Redoxin DUF1461 PF07314.11 189 CP007180_00050 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) Topoisom_bac PF01131.20 413 CP007180_00051 - 730 9e-97 324.7 8.0 1 1 1.2e-99 1.3e-96 324.2 8.0 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP007180_00051 - 730 9.7e-12 45.0 0.1 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP007180_00051 - 730 9.7e-12 45.0 0.1 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 CP007180_00051 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP007180_00051 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP007180_00051 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP007180_00051 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP007180_00051 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CP007180_00051 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP007180_00051 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CP007180_00051 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP007180_00051 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 CP007180_00051 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 CP007180_00051 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain EF-hand_8 PF13833.6 55 CP007180_00051 - 730 0.052 13.4 0.2 1 2 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair EF-hand_8 PF13833.6 55 CP007180_00051 - 730 0.052 13.4 0.2 2 2 1.7 1.8e+03 -1.2 0.0 24 36 342 354 332 355 0.83 EF-hand domain pair zf-C2H2_4 PF13894.6 24 CP007180_00051 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP007180_00051 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CP007180_00051 - 730 0.086 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP007180_00051 - 730 0.086 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 CP007180_00051 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP007180_00051 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 CP007180_00051 - 730 0.38 11.0 3.0 1 3 1.9 2e+03 -1.0 0.0 26 47 362 383 354 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP007180_00051 - 730 0.38 11.0 3.0 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP007180_00051 - 730 0.38 11.0 3.0 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 CP007180_00051 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 CP007180_00051 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 CP007180_00051 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP007180_00051 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 CP007180_00051 - 730 0.76 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 CP007180_00051 - 730 0.76 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 CP007180_00051 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 CP007180_00051 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 CP007180_00051 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 CP007180_00051 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 CP007180_00053 - 404 3.9e-05 23.6 2.2 1 1 1.1e-08 0.0001 22.2 2.2 4 133 262 387 259 397 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP007180_00053 - 404 0.02 14.9 4.4 1 1 1.8e-05 0.16 11.9 4.4 37 125 242 375 142 383 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 CP007180_00055 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP007180_00055 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP007180_00055 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP007180_00055 - 639 1.2e-16 60.5 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP007180_00055 - 639 3e-12 46.4 0.1 1 1 3.5e-15 6.9e-12 45.3 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP007180_00055 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP007180_00055 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP007180_00055 - 639 0.019 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP007180_00055 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP007180_00055 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family TrbC PF04956.13 99 CP007750_00002 - 87 1.4e-15 57.3 6.9 1 1 1.8e-19 1.6e-15 57.1 6.9 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP007750_00002 - 87 0.041 13.8 3.5 1 1 5.4e-06 0.049 13.5 3.3 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 CP007750_00004 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP007750_00004 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 CP007750_00004 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase Resolvase PF00239.21 146 CP007750_00005 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP007750_00005 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP007750_00005 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 CP007750_00005 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP007750_00005 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP007750_00005 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP007750_00005 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 CP007750_00005 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP007750_00005 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP007750_00005 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat AAA_25 PF13481.6 194 CP007750_00006 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 CP007750_00006 - 597 0.00073 19.0 0.0 1 2 1.6e-06 0.0042 16.5 0.0 16 117 30 136 23 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP007750_00006 - 597 0.00073 19.0 0.0 2 2 0.014 37 3.5 0.0 123 183 114 176 98 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP007750_00006 - 597 0.0032 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP007750_00006 - 597 0.0032 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 CP007750_00006 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP007750_00006 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 CP007750_00006 - 597 0.028 13.8 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 CP007750_00006 - 597 0.028 13.8 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 CP007750_00006 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 CP007750_00006 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 CP007750_00006 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain HicB_lk_antitox PF15919.5 123 CP007750_00007 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 CP007750_00008 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 CP007750_00008 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 CP007750_00008 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) UBA_6 PF18039.1 42 CP007750_00009 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 CP007750_00009 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 CP007750_00009 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 CP007750_00009 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region DUF4223 PF13978.6 54 CP007750_00010 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 CP007750_00010 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 CP007750_00010 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 CP007750_00011 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 CP007750_00011 - 408 0.074 13.0 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 CP007750_00011 - 408 0.13 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 CP007750_00011 - 408 0.27 11.9 5.3 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP007750_00011 - 408 0.27 11.9 5.3 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF2400 PF09674.10 227 CP007750_00012 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 CP007750_00012 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) CdvA PF18822.1 123 CP007750_00014 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP007750_00014 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 CP007750_00014 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 CP007750_00014 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 CP007750_00014 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 CP007750_00015 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP007750_00015 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP007750_00015 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP007750_00015 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP007750_00015 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP007750_00015 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP007750_00015 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 CP007750_00015 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP007750_00015 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 CP007750_00015 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP007750_00015 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Relaxase PF03432.14 242 CP007750_00016 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP007750_00016 - 462 1.9e-10 40.8 7.0 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_19 PF12844.7 65 CP007750_00017 - 314 9.3e-06 25.6 0.1 1 2 0.0025 4.5 7.4 0.0 11 31 9 29 1 41 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 CP007750_00017 - 314 9.3e-06 25.6 0.1 2 2 8.7e-06 0.016 15.3 0.0 28 64 117 152 98 153 0.91 Helix-turn-helix domain HTH_3 PF01381.22 55 CP007750_00017 - 314 9.6e-06 25.6 0.0 1 2 3.2e-07 0.00057 19.9 0.0 2 29 3 30 2 30 0.89 Helix-turn-helix HTH_3 PF01381.22 55 CP007750_00017 - 314 9.6e-06 25.6 0.0 2 2 0.051 91 3.2 0.0 26 55 118 147 110 147 0.89 Helix-turn-helix Phage_CI_repr PF07022.13 65 CP007750_00017 - 314 0.00071 19.6 0.0 1 2 2.5e-05 0.045 13.8 0.0 5 49 4 47 1 53 0.78 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 CP007750_00017 - 314 0.00071 19.6 0.0 2 2 0.051 91 3.3 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 CP007750_00017 - 314 0.0073 15.8 0.0 1 2 5.5e-05 0.099 12.2 0.0 17 34 10 27 10 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP007750_00017 - 314 0.0073 15.8 0.0 2 2 0.21 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 CP007750_00017 - 314 0.0089 16.1 0.0 1 2 1.7e-05 0.03 14.5 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain HTH_28 PF13518.6 52 CP007750_00017 - 314 0.0089 16.1 0.0 2 2 3.4 6.2e+03 -2.6 0.0 6 21 44 59 42 67 0.63 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 CP007750_00017 - 314 0.011 15.6 0.2 1 2 1.6e-05 0.028 14.3 0.0 2 36 3 37 2 49 0.79 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 CP007750_00017 - 314 0.011 15.6 0.2 2 2 3.5 6.2e+03 -2.8 0.1 38 47 290 299 289 300 0.85 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 CP007750_00017 - 314 0.017 14.9 0.0 1 2 2.7e-05 0.049 13.4 0.0 16 37 7 30 1 36 0.87 Homeodomain-like domain HTH_23 PF13384.6 50 CP007750_00017 - 314 0.017 14.9 0.0 2 2 2.6 4.7e+03 -2.4 0.0 35 49 54 67 53 67 0.81 Homeodomain-like domain Sigma70_r4_2 PF08281.12 54 CP007750_00017 - 314 0.026 14.2 0.0 1 1 3.1e-05 0.055 13.1 0.0 25 46 9 30 6 30 0.93 Sigma-70, region 4 HTH_31 PF13560.6 64 CP007750_00017 - 314 0.065 13.6 0.0 1 1 6.8e-05 0.12 12.7 0.0 13 33 9 29 3 38 0.89 Helix-turn-helix domain CENP-B_N PF04218.13 53 CP007750_00017 - 314 0.073 12.7 0.0 1 2 0.00019 0.35 10.5 0.0 22 44 10 32 8 35 0.92 CENP-B N-terminal DNA-binding domain CENP-B_N PF04218.13 53 CP007750_00017 - 314 0.073 12.7 0.0 2 2 2 3.6e+03 -2.3 0.0 32 41 293 302 290 303 0.82 CENP-B N-terminal DNA-binding domain NYN PF01936.18 147 CP007750_00018 - 226 1.1e-09 38.9 1.0 1 1 2.6e-13 4.7e-09 36.9 1.0 49 120 123 195 4 216 0.83 NYN domain SNF2_N PF00176.23 350 CP007750_00019 - 1932 1.7e-16 59.9 1.1 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP007750_00019 - 1932 1.7e-16 59.9 1.1 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP007750_00019 - 1932 1.7e-16 59.9 1.1 3 3 1.2 4.4e+03 -3.9 0.0 173 197 1880 1905 1861 1922 0.71 SNF2 family N-terminal domain ResIII PF04851.15 171 CP007750_00019 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP007750_00019 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP007750_00019 - 1932 4.9e-08 33.2 8.3 3 3 0.41 1.5e+03 -0.9 5.7 35 121 1800 1904 1747 1931 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP007750_00019 - 1932 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP007750_00019 - 1932 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP007750_00019 - 1932 6.2e-06 26.1 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 CP007750_00019 - 1932 6.2e-06 26.1 1.6 2 2 0.086 3.1e+02 1.0 0.0 119 155 1883 1924 1827 1930 0.76 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP007750_00019 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP007750_00019 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 CP007750_00020 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 CP007750_00021 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP007750_00021 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP007750_00021 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP007750_00021 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP007750_00021 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP007750_00021 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 CP007750_00022 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP007750_00022 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 CP007750_00023 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP007750_00023 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP007750_00023 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP007750_00023 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP007750_00023 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP007750_00023 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 CP007750_00024 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 CP007750_00024 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP007750_00024 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 CP007750_00024 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 CP007750_00024 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 CP007750_00024 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 CP007750_00024 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP007750_00024 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP007750_00024 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 CP007750_00025 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CP007750_00025 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain Lip_prot_lig_C PF10437.9 85 CP007750_00026 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 CP007750_00026 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 CP007750_00026 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP007750_00026 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain W2 PF02020.18 79 CP007750_00027 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 CP007750_00027 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 CP007750_00027 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain DUF5442 PF17514.2 107 CP007750_00029 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 CP007750_00029 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) GTP_EFTU PF00009.27 194 CP007750_00030 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP007750_00030 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP007750_00030 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP007750_00030 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP007750_00030 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP007750_00030 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP007750_00030 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP007750_00030 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP007750_00030 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP007750_00030 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 CP007750_00032 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP007750_00032 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain Topoisom_bac PF01131.20 413 CP007750_00033 - 730 1.2e-96 324.2 8.2 1 1 1.6e-99 1.7e-96 323.8 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP007750_00033 - 730 1.8e-12 47.4 0.4 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP007750_00033 - 730 1.8e-12 47.4 0.4 2 2 4.1 4.3e+03 -2.0 0.1 38 56 537 556 489 568 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 CP007750_00033 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP007750_00033 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP007750_00033 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP007750_00033 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP007750_00033 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CP007750_00033 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP007750_00033 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CP007750_00033 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP007750_00033 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 CP007750_00033 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 CP007750_00033 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 CP007750_00033 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP007750_00033 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CP007750_00033 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP007750_00033 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 CP007750_00033 - 730 0.088 12.7 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 CP007750_00033 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP007750_00033 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 CP007750_00033 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP007750_00033 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP007750_00033 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 CP007750_00033 - 730 0.55 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 CP007750_00033 - 730 0.55 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 CP007750_00033 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP007750_00033 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 CP007750_00033 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 CP007750_00033 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 CP007750_00033 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 CP007750_00033 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 CP007750_00033 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 CP007750_00033 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 CP007750_00034 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP007750_00034 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 CP007750_00036 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 CP007750_00036 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 CP007750_00036 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 CP007750_00036 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP007750_00036 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP007750_00036 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 CP007750_00037 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 CP007750_00038 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 CP007750_00038 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 CP007750_00038 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CP007750_00038 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CP007750_00038 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 CP007750_00039 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP007750_00039 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP007750_00039 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP007750_00039 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CP007750_00039 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 CP007750_00040 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP007750_00040 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP007750_00040 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP007750_00040 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP007750_00040 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CP007750_00040 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CP007750_00040 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CP007750_00040 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP007750_00040 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CP007750_00040 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP007750_00040 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP007750_00040 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CP007750_00040 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CP007750_00040 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CP007750_00040 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP007750_00040 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CP007750_00040 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CP007750_00040 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CP007750_00040 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CP007750_00040 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CP007750_00040 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP007750_00040 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CP007750_00040 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP007750_00040 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP007750_00040 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CP007750_00040 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CP007750_00040 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 CP007750_00040 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP007750_00040 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP007750_00040 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CP007750_00040 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 CP007750_00040 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 CP007750_00041 - 390 3.1e-48 164.1 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 193 374 193 374 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP007750_00041 - 390 0.028 13.5 0.1 1 1 4.8e-06 0.043 12.9 0.1 31 81 321 371 304 376 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 CP007750_00042 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CP007750_00042 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CP007750_00042 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 CP007750_00043 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CP007750_00043 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 CP007750_00044 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CP007750_00044 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 CP007750_00045 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP007750_00045 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP007750_00045 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP007750_00045 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 CP007750_00045 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 CP007750_00046 - 323 1.6e-28 100.5 13.6 1 1 6.7e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 CP007750_00046 - 323 0.0055 16.8 0.6 1 2 0.85 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP007750_00046 - 323 0.0055 16.8 0.6 2 2 6.9e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CP007750_00046 - 323 0.015 16.0 5.3 1 2 0.04 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP007750_00046 - 323 0.015 16.0 5.3 2 2 5e-06 0.015 16.0 5.3 49 128 225 318 205 322 0.76 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 CP007750_00046 - 323 0.018 15.7 1.0 1 2 1.9 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP007750_00046 - 323 0.018 15.7 1.0 2 2 1.2e-05 0.036 14.7 0.2 31 84 208 270 197 310 0.85 von Willebrand factor type A domain THOC7 PF05615.13 132 CP007750_00046 - 323 2.9 8.2 11.5 1 2 0.00053 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 CP007750_00046 - 323 2.9 8.2 11.5 2 2 0.16 4.9e+02 1.0 6.0 15 71 230 294 215 315 0.58 Tho complex subunit 7 DHR10 PF18595.1 117 CP007750_00046 - 323 5.1 7.2 14.8 1 2 0.087 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 CP007750_00046 - 323 5.1 7.2 14.8 2 2 0.00018 0.55 10.3 6.5 37 105 233 300 223 313 0.82 Designed helical repeat protein 10 domain IF2_N PF04760.15 54 CP007750_00047 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP007750_00047 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP007750_00047 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP007750_00047 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP007750_00047 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP007750_00047 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP007750_00047 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 CP007750_00048 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3251 PF11622.8 165 CP007750_00049 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 CP007750_00049 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 CP007750_00049 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 CP007750_00049 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP007750_00049 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP007750_00049 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 CP007750_00049 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP007750_00049 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP007750_00049 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 CP007750_00049 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 CP007750_00049 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 CP007750_00049 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP007750_00049 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP007750_00049 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) Phage_pRha PF09669.10 88 CP007750_00050 - 185 6.3e-29 100.4 0.0 1 1 2.7e-32 9.7e-29 99.8 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 CP007750_00050 - 185 0.0015 18.6 0.0 1 1 9.1e-07 0.0033 17.5 0.0 23 90 27 94 23 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 CP007750_00050 - 185 0.045 13.3 0.1 1 2 0.066 2.4e+02 1.3 0.0 80 118 33 71 5 80 0.79 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 CP007750_00050 - 185 0.045 13.3 0.1 2 2 0.00012 0.42 10.2 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 CP007750_00050 - 185 0.086 12.9 0.0 1 1 5.8e-05 0.21 11.6 0.0 77 131 80 130 63 134 0.84 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 CP007750_00050 - 185 0.73 9.9 5.7 1 3 0.054 1.9e+02 2.1 0.0 43 53 15 25 4 29 0.81 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CP007750_00050 - 185 0.73 9.9 5.7 2 3 0.0022 7.9 6.6 0.8 5 26 30 50 26 61 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CP007750_00050 - 185 0.73 9.9 5.7 3 3 0.064 2.3e+02 1.9 0.0 10 42 116 154 108 160 0.67 Sporulation protein Cse60 CagE_TrbE_VirB PF03135.14 206 CP007750_00051 - 559 1.6e-28 100.2 0.0 1 1 7.6e-32 4.5e-28 98.8 0.0 88 206 1 119 1 119 0.99 CagE, TrbE, VirB family, component of type IV transporter system HNOBA PF07701.14 221 CP007750_00051 - 559 0.022 14.2 0.1 1 1 6.2e-06 0.037 13.5 0.1 53 153 261 481 259 489 0.85 Heme NO binding associated cEGF PF12662.7 24 CP007750_00051 - 559 0.2 11.6 0.0 1 1 9.1e-05 0.54 10.2 0.0 14 24 396 407 392 407 0.82 Complement Clr-like EGF-like TraC_F_IV PF11130.8 238 CP009044_00001 - 830 7.6e-30 104.3 0.0 1 1 6.3e-33 1.4e-29 103.4 0.0 2 237 29 251 28 252 0.92 F pilus assembly Type-IV secretion system for plasmid transfer AAA_10 PF12846.7 362 CP009044_00001 - 830 3.3e-10 39.4 0.0 1 1 7.4e-13 1.7e-09 37.1 0.0 23 292 455 716 450 741 0.78 AAA-like domain TrwB_AAD_bind PF10412.9 386 CP009044_00001 - 830 0.00074 18.5 0.0 1 2 0.00072 1.6 7.5 0.0 19 85 457 522 442 547 0.75 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP009044_00001 - 830 0.00074 18.5 0.0 2 2 0.00036 0.8 8.5 0.0 225 286 645 711 620 740 0.79 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 137 CP009044_00001 - 830 0.0072 16.6 0.1 1 3 0.98 2.2e+03 -1.2 0.0 106 135 74 98 64 100 0.77 AAA domain AAA_22 PF13401.6 137 CP009044_00001 - 830 0.0072 16.6 0.1 2 3 0.016 36 4.6 0.0 9 25 457 473 455 491 0.90 AAA domain AAA_22 PF13401.6 137 CP009044_00001 - 830 0.0072 16.6 0.1 3 3 0.0018 4.1 7.7 0.0 84 128 653 703 644 709 0.72 AAA domain Zot PF05707.12 194 CP009044_00001 - 830 0.012 15.2 0.0 1 1 1.2e-05 0.026 14.1 0.0 84 131 667 711 652 721 0.86 Zonular occludens toxin (Zot) FH2 PF02181.23 372 CP009044_00001 - 830 0.016 14.4 1.1 1 2 0.0084 19 4.2 0.3 310 368 94 152 73 156 0.93 Formin Homology 2 Domain FH2 PF02181.23 372 CP009044_00001 - 830 0.016 14.4 1.1 2 2 0.00046 1 8.4 0.0 64 113 543 594 518 608 0.86 Formin Homology 2 Domain CbiA PF01656.23 128 CP009044_00001 - 830 0.039 14.0 0.0 1 1 4.5e-05 0.1 12.7 0.0 7 55 461 561 458 715 0.75 CobQ/CobB/MinD/ParA nucleotide binding domain UPF0181 PF03701.14 50 CP009044_00001 - 830 0.22 11.2 0.5 1 2 4.9 1.1e+04 -3.8 0.0 34 47 96 109 93 111 0.83 Uncharacterised protein family (UPF0181) UPF0181 PF03701.14 50 CP009044_00001 - 830 0.22 11.2 0.5 2 2 0.0003 0.67 9.6 0.1 19 40 807 828 805 828 0.94 Uncharacterised protein family (UPF0181) TrbI_Ftype PF09677.10 106 CP009044_00002 - 122 2.1e-05 24.8 1.3 1 1 1.4e-09 2.5e-05 24.6 1.3 56 100 65 110 6 116 0.87 Type-F conjugative transfer system protein (TrbI_Ftype) Peptidase_S26 PF10502.9 138 CP009044_00003 - 165 2.2e-13 50.2 0.0 1 1 1.9e-17 3.4e-13 49.6 0.0 19 133 55 161 36 164 0.88 Signal peptidase, peptidase S26 TraH PF06122.11 361 CP009044_00004 - 478 5.6e-68 229.8 2.0 1 1 4.4e-72 7.8e-68 229.4 2.0 6 354 32 386 26 393 0.79 Conjugative relaxosome accessory transposon protein TraN PF06986.11 240 CP009044_00006 - 718 4.3e-29 101.9 9.8 1 5 1 1.8e+04 -7.1 9.8 9 87 252 326 245 344 0.66 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 CP009044_00006 - 718 4.3e-29 101.9 9.8 2 5 0.24 4.3e+03 -2.9 0.1 61 76 362 377 350 395 0.81 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 CP009044_00006 - 718 4.3e-29 101.9 9.8 3 5 1 1.8e+04 -5.3 5.4 29 73 407 446 376 485 0.55 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 CP009044_00006 - 718 4.3e-29 101.9 9.8 4 5 0.0013 23 4.6 6.9 42 77 480 517 469 541 0.81 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 CP009044_00006 - 718 4.3e-29 101.9 9.8 5 5 2.4e-33 4.3e-29 101.9 9.8 131 240 550 667 523 667 0.82 Type-1V conjugative transfer system mating pair stabilisation Staphylokinase PF02821.16 126 CP009044_00011 - 121 0.075 13.5 5.2 1 2 0.00014 2.6 8.5 1.5 33 62 10 37 2 46 0.80 Staphylokinase/Streptokinase family Staphylokinase PF02821.16 126 CP009044_00011 - 121 0.075 13.5 5.2 2 2 0.00047 8.4 6.9 0.1 40 77 48 83 44 104 0.82 Staphylokinase/Streptokinase family HTH_19 PF12844.7 65 CP009044_00013 - 123 9.4e-08 32.0 0.6 1 2 1.6e-10 3.6e-07 30.1 0.2 3 60 20 77 19 78 0.97 Helix-turn-helix domain HTH_19 PF12844.7 65 CP009044_00013 - 123 9.4e-08 32.0 0.6 2 2 0.56 1.3e+03 -0.5 0.0 26 35 98 107 80 119 0.68 Helix-turn-helix domain HTH_3 PF01381.22 55 CP009044_00013 - 123 3.1e-06 27.1 0.2 1 1 2.6e-09 5.9e-06 26.2 0.2 1 55 21 76 21 76 0.93 Helix-turn-helix HTH_26 PF13443.6 63 CP009044_00013 - 123 0.0061 17.0 0.0 1 1 4.4e-06 0.0099 16.3 0.0 11 55 30 74 20 79 0.90 Cro/C1-type HTH DNA-binding domain Phage_CI_repr PF07022.13 65 CP009044_00013 - 123 0.012 15.7 0.0 1 1 8.1e-06 0.018 15.1 0.0 11 63 28 82 21 84 0.87 Bacteriophage CI repressor helix-turn-helix domain HTH_25 PF13413.6 62 CP009044_00013 - 123 0.014 15.2 0.0 1 1 1.3e-05 0.028 14.3 0.0 5 42 24 61 20 75 0.84 Helix-turn-helix domain Pup PF05639.11 68 CP009044_00013 - 123 0.02 15.8 0.3 1 1 1.7e-05 0.038 14.9 0.3 18 51 86 119 80 121 0.80 Pup-like protein Nbl1_Borealin_N PF10444.9 57 CP009044_00013 - 123 0.047 13.3 2.8 1 3 0.04 90 2.8 0.1 10 39 13 43 8 46 0.80 Nbl1 / Borealin N terminal Nbl1_Borealin_N PF10444.9 57 CP009044_00013 - 123 0.047 13.3 2.8 2 3 2.6 5.8e+03 -3.0 0.0 28 37 62 71 60 74 0.53 Nbl1 / Borealin N terminal Nbl1_Borealin_N PF10444.9 57 CP009044_00013 - 123 0.047 13.3 2.8 3 3 0.00016 0.37 10.5 0.2 13 38 97 122 86 123 0.89 Nbl1 / Borealin N terminal DUF16 PF01519.16 104 CP009044_00013 - 123 0.16 12.5 3.8 1 2 0.072 1.6e+02 2.8 0.3 35 78 13 54 4 76 0.58 Protein of unknown function DUF16 DUF16 PF01519.16 104 CP009044_00013 - 123 0.16 12.5 3.8 2 2 0.00018 0.41 11.2 0.3 29 54 94 119 80 123 0.82 Protein of unknown function DUF16 zf-ACC PF17848.1 26 CP009044_00016 - 81 0.0036 17.3 4.1 1 2 0.0024 2.4 8.3 0.3 2 9 11 18 11 28 0.75 Acetyl-coA carboxylase zinc finger domain zf-ACC PF17848.1 26 CP009044_00016 - 81 0.0036 17.3 4.1 2 2 0.0008 0.8 9.8 0.4 2 12 41 50 41 55 0.76 Acetyl-coA carboxylase zinc finger domain zf-ribbon_3 PF13248.6 26 CP009044_00016 - 81 0.0069 15.8 2.9 1 2 0.0018 1.8 8.1 0.2 17 25 11 19 6 19 0.82 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP009044_00016 - 81 0.0069 15.8 2.9 2 2 0.0019 1.9 8.0 0.2 3 11 41 49 39 52 0.74 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 43 CP009044_00016 - 81 0.0087 15.6 2.4 1 2 0.00078 0.77 9.3 0.4 2 18 12 28 11 31 0.84 TFIIB zinc-binding TF_Zn_Ribbon PF08271.12 43 CP009044_00016 - 81 0.0087 15.6 2.4 2 2 0.0064 6.4 6.4 0.1 21 28 42 49 37 59 0.78 TFIIB zinc-binding tRNA-synt_1g PF09334.11 391 CP009044_00016 - 81 0.021 13.6 0.7 1 1 2.4e-05 0.024 13.4 0.7 136 175 10 49 2 59 0.87 tRNA synthetases class I (M) zf-ISL3 PF14690.6 47 CP009044_00016 - 81 0.023 15.4 1.2 1 2 0.00026 0.26 12.0 0.1 4 28 12 35 9 38 0.80 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ISL3 PF14690.6 47 CP009044_00016 - 81 0.023 15.4 1.2 2 2 0.21 2.1e+02 2.7 0.1 3 12 41 51 39 69 0.79 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.10 40 CP009044_00016 - 81 0.031 14.4 0.3 1 2 0.0059 5.9 7.1 0.1 21 34 4 18 1 22 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP009044_00016 - 81 0.031 14.4 0.3 2 2 0.018 18 5.5 0.0 7 15 42 50 34 59 0.77 Zinc ribbon domain zinc_ribbon_5 PF13719.6 37 CP009044_00016 - 81 0.032 14.0 1.0 1 3 0.011 11 5.9 0.0 4 11 12 19 10 31 0.85 zinc-ribbon domain zinc_ribbon_5 PF13719.6 37 CP009044_00016 - 81 0.032 14.0 1.0 2 3 0.0064 6.4 6.6 0.0 27 37 42 52 37 52 0.87 zinc-ribbon domain zinc_ribbon_5 PF13719.6 37 CP009044_00016 - 81 0.032 14.0 1.0 3 3 5.5 5.5e+03 -2.8 0.0 13 18 71 76 68 80 0.61 zinc-ribbon domain zf-LITAF-like PF10601.9 70 CP009044_00016 - 81 0.064 13.5 1.4 1 2 0.015 15 6.0 0.3 54 64 8 18 4 23 0.65 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP009044_00016 - 81 0.064 13.5 1.4 2 2 0.0074 7.3 6.9 0.0 3 26 38 61 36 71 0.83 LITAF-like zinc ribbon domain Elf1 PF05129.13 78 CP009044_00016 - 81 0.09 12.8 2.1 1 2 7.6e-05 0.075 13.1 0.9 20 63 9 58 2 60 0.81 Transcription elongation factor Elf1 like Elf1 PF05129.13 78 CP009044_00016 - 81 0.09 12.8 2.1 2 2 9.8 9.8e+03 -3.3 0.0 21 26 66 71 65 75 0.72 Transcription elongation factor Elf1 like zf-C2H2_4 PF13894.6 24 CP009044_00016 - 81 0.09 13.7 1.8 1 2 0.019 19 6.4 0.2 2 10 12 21 11 26 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP009044_00016 - 81 0.09 13.7 1.8 2 2 0.019 19 6.4 0.1 2 11 42 51 41 58 0.82 C2H2-type zinc finger zf-C2H2_3 PF13878.6 40 CP009044_00016 - 81 0.1 12.4 1.6 1 2 0.099 98 2.9 0.1 12 20 9 17 4 23 0.78 zinc-finger of acetyl-transferase ESCO zf-C2H2_3 PF13878.6 40 CP009044_00016 - 81 0.1 12.4 1.6 2 2 0.0014 1.4 8.8 0.1 4 25 33 52 32 56 0.74 zinc-finger of acetyl-transferase ESCO DUF4379 PF14311.6 56 CP009044_00016 - 81 0.13 12.6 6.2 1 2 0.081 80 3.7 0.2 47 56 9 16 2 16 0.67 Probable Zinc-ribbon domain DUF4379 PF14311.6 56 CP009044_00016 - 81 0.13 12.6 6.2 2 2 0.00049 0.49 10.8 1.4 5 47 23 58 18 71 0.67 Probable Zinc-ribbon domain DUF35_N PF12172.8 37 CP009044_00016 - 81 0.18 11.7 2.4 1 2 0.028 28 4.7 0.1 27 33 12 18 9 22 0.75 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35_N PF12172.8 37 CP009044_00016 - 81 0.18 11.7 2.4 2 2 0.0052 5.2 7.0 0.3 12 21 41 50 41 50 0.89 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 23 CP009044_00016 - 81 0.22 11.3 4.3 1 2 0.0098 9.7 6.1 0.4 1 6 12 17 5 19 0.74 zinc-ribbon domain zinc_ribbon_2 PF13240.6 23 CP009044_00016 - 81 0.22 11.3 4.3 2 2 0.0086 8.6 6.2 0.3 1 7 42 48 40 52 0.79 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP009044_00016 - 81 0.25 11.3 4.7 1 2 0.0083 8.3 6.4 0.7 4 14 12 22 10 33 0.78 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP009044_00016 - 81 0.25 11.3 4.7 2 2 0.007 7 6.7 0.2 26 35 41 50 28 51 0.77 zinc-ribbon domain CpXC PF14353.6 118 CP009044_00016 - 81 0.25 11.4 2.4 1 1 0.0012 1.2 9.2 2.4 2 51 12 54 11 69 0.82 CpXC protein Zn_Tnp_IS91 PF14319.6 91 CP009044_00016 - 81 0.36 10.9 4.1 1 2 0.001 1 9.4 0.4 56 82 9 35 2 41 0.78 Transposase zinc-binding domain Zn_Tnp_IS91 PF14319.6 91 CP009044_00016 - 81 0.36 10.9 4.1 2 2 0.094 94 3.1 0.2 58 69 41 52 37 69 0.73 Transposase zinc-binding domain Zn_Tnp_IS1595 PF12760.7 46 CP009044_00016 - 81 0.66 10.0 5.5 1 2 0.0052 5.1 7.1 3.1 19 43 11 46 1 49 0.63 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 CP009044_00016 - 81 0.66 10.0 5.5 2 2 0.027 27 4.8 0.5 20 40 42 69 24 71 0.69 Transposase zinc-ribbon domain Phage_integrase PF00589.22 172 CP009044_00017 - 328 4.8e-23 81.8 0.1 1 1 2.5e-26 8.8e-23 80.9 0.1 2 170 138 312 137 313 0.86 Phage integrase family Phage_int_SAM_4 PF13495.6 85 CP009044_00017 - 328 0.0021 18.5 8.6 1 3 0.00012 0.42 11.1 0.3 2 50 16 68 15 84 0.72 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 CP009044_00017 - 328 0.0021 18.5 8.6 2 3 5.7e-05 0.2 12.1 0.7 12 37 86 110 80 170 0.81 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 CP009044_00017 - 328 0.0021 18.5 8.6 3 3 2.5 9e+03 -2.8 0.1 9 21 297 309 293 312 0.79 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 CP009044_00017 - 328 0.0042 17.4 0.3 1 1 6.5e-06 0.023 15.0 0.3 11 79 25 106 17 111 0.80 Phage integrase, N-terminal SAM-like domain TSNAXIP1_N PF15739.5 111 CP009044_00017 - 328 0.11 12.8 1.6 1 1 8e-05 0.29 11.5 1.3 19 83 29 96 17 114 0.78 Translin-associated factor X-interacting N-terminus Phage_int_SAM_3 PF14659.6 58 CP009044_00017 - 328 0.99 9.7 6.9 1 3 0.00019 0.67 10.3 0.7 7 50 13 64 8 71 0.69 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_3 PF14659.6 58 CP009044_00017 - 328 0.99 9.7 6.9 2 3 0.16 5.9e+02 0.8 0.3 16 31 87 102 83 105 0.87 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_3 PF14659.6 58 CP009044_00017 - 328 0.99 9.7 6.9 3 3 0.64 2.3e+03 -1.0 0.0 36 44 120 128 116 131 0.80 Phage integrase, N-terminal SAM-like domain DUF1566 PF07603.11 115 CP009044_00018 - 117 0.0015 18.9 0.0 1 1 1.1e-07 0.0019 18.5 0.0 18 115 27 111 8 111 0.79 Protein of unknown function (DUF1566) DUF433 PF04255.14 56 CP009044_00019 - 68 0.047 13.5 0.0 1 1 7.7e-06 0.069 13.0 0.0 24 53 14 43 5 44 0.88 Protein of unknown function (DUF433) Toxin_YhaV PF11663.8 138 CP009044_00019 - 68 0.079 13.0 0.0 1 2 1.9e-05 0.17 11.9 0.0 112 136 9 33 2 35 0.85 Toxin with endonuclease activity, of toxin-antitoxin system Toxin_YhaV PF11663.8 138 CP009044_00019 - 68 0.079 13.0 0.0 2 2 0.33 3e+03 -1.8 0.0 20 23 52 55 38 66 0.42 Toxin with endonuclease activity, of toxin-antitoxin system WGR PF05406.15 80 CP009044_00023 - 82 6.7e-07 29.3 0.3 1 1 4.9e-11 8.8e-07 28.9 0.3 8 76 12 79 4 82 0.84 WGR domain DUF3951 PF13131.6 52 CP009044_00027 - 37 0.048 13.9 0.2 1 1 2.7e-06 0.048 13.8 0.2 1 20 1 20 1 30 0.89 Protein of unknown function (DUF3951) DUF4064 PF13273.6 103 CP009044_00028 - 108 1.1 9.6 10.9 1 1 0.026 2.4e+02 2.1 10.9 16 87 10 105 1 108 0.49 Protein of unknown function (DUF4064) DUF2929 PF11151.8 56 CP009044_00028 - 108 2.9 8.3 8.4 1 2 0.27 2.4e+03 -1.1 1.2 36 47 10 21 2 30 0.60 Protein of unknown function (DUF2929) DUF2929 PF11151.8 56 CP009044_00028 - 108 2.9 8.3 8.4 2 2 1.3e-05 0.12 12.7 1.0 9 55 52 102 52 103 0.84 Protein of unknown function (DUF2929) HD_2 PF12917.7 182 CP009044_00029 - 182 0.00032 20.5 0.1 1 1 3.8e-08 0.00069 19.4 0.1 55 98 64 104 47 136 0.74 HD containing hydrolase-like enzyme CDT1 PF08839.11 175 CP009044_00031 - 109 0.089 13.1 0.0 1 1 6.5e-06 0.12 12.7 0.0 118 168 10 60 2 64 0.91 DNA replication factor CDT1 like DUF1351 PF07083.11 210 CP009044_00032 - 350 3.8e-24 85.6 8.0 1 2 8.4e-28 3.8e-24 85.6 8.0 2 180 18 200 17 211 0.91 Protein of unknown function (DUF1351) DUF1351 PF07083.11 210 CP009044_00032 - 350 3.8e-24 85.6 8.0 2 2 0.25 1.1e+03 -0.8 3.6 78 116 222 260 215 293 0.75 Protein of unknown function (DUF1351) DUF4337 PF14235.6 161 CP009044_00032 - 350 0.96 9.5 5.4 1 2 0.00047 2.1 8.4 0.7 48 110 34 96 31 114 0.80 Domain of unknown function (DUF4337) DUF4337 PF14235.6 161 CP009044_00032 - 350 0.96 9.5 5.4 2 2 0.026 1.2e+02 2.8 0.4 72 102 218 249 202 255 0.79 Domain of unknown function (DUF4337) Allexi_40kDa PF05549.11 271 CP009044_00032 - 350 1.6 8.2 6.9 1 2 3.4e-05 0.15 11.5 1.9 66 155 3 92 1 113 0.90 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 CP009044_00032 - 350 1.6 8.2 6.9 2 2 0.4 1.8e+03 -1.8 0.2 116 144 221 251 202 291 0.49 Allexivirus 40kDa protein KIP1 PF07765.12 74 CP009044_00032 - 350 8.7 6.5 9.0 1 2 0.00016 0.72 10.0 1.3 9 61 75 128 69 137 0.86 KIP1-like protein KIP1 PF07765.12 74 CP009044_00032 - 350 8.7 6.5 9.0 2 2 0.23 1e+03 -0.1 1.3 28 55 223 251 214 261 0.51 KIP1-like protein LBR_tudor PF09465.10 55 CP009044_00033 - 90 0.036 13.9 0.2 1 1 3.2e-06 0.058 13.2 0.2 21 46 49 74 39 78 0.93 Lamin-B receptor of TUDOR domain zf-B_box PF00643.24 42 CP009044_00034 - 166 0.006 16.7 13.5 1 2 3.8e-06 0.0062 16.7 7.5 4 37 3 38 1 43 0.85 B-box zinc finger zf-B_box PF00643.24 42 CP009044_00034 - 166 0.006 16.7 13.5 2 2 0.055 89 3.4 0.3 24 30 66 72 57 75 0.63 B-box zinc finger FYVE PF01363.21 68 CP009044_00034 - 166 0.026 14.6 6.7 1 1 4.1e-05 0.067 13.3 6.9 12 66 2 75 1 77 0.82 FYVE zinc finger DUF4428 PF14471.6 51 CP009044_00034 - 166 0.069 13.1 0.1 1 2 0.72 1.2e+03 -0.5 2.8 16 26 9 20 2 37 0.76 Domain of unknown function (DUF4428) DUF4428 PF14471.6 51 CP009044_00034 - 166 0.069 13.1 0.1 2 2 4.2e-05 0.069 13.1 0.1 20 41 65 87 49 92 0.76 Domain of unknown function (DUF4428) zf-C4_ClpX PF06689.13 39 CP009044_00034 - 166 0.19 11.6 12.5 1 2 0.002 3.3 7.7 4.5 3 31 2 30 1 34 0.89 ClpX C4-type zinc finger zf-C4_ClpX PF06689.13 39 CP009044_00034 - 166 0.19 11.6 12.5 2 2 0.0011 1.7 8.6 1.0 24 32 66 74 57 77 0.81 ClpX C4-type zinc finger Gin PF10764.9 45 CP009044_00034 - 166 0.24 11.4 10.0 1 2 0.0066 11 6.1 4.6 1 29 2 34 2 37 0.88 Inhibitor of sigma-G Gin Gin PF10764.9 45 CP009044_00034 - 166 0.24 11.4 10.0 2 2 0.0021 3.5 7.7 0.2 18 29 66 77 64 90 0.83 Inhibitor of sigma-G Gin zf-RING_2 PF13639.6 44 CP009044_00034 - 166 0.34 11.3 9.3 1 2 0.0047 7.6 7.0 7.4 2 37 1 36 1 46 0.82 Ring finger domain zf-RING_2 PF13639.6 44 CP009044_00034 - 166 0.34 11.3 9.3 2 2 0.038 62 4.0 0.1 16 35 54 77 43 79 0.64 Ring finger domain zf-CHY PF05495.12 75 CP009044_00034 - 166 0.35 11.4 10.0 1 2 0.36 5.8e+02 1.1 5.8 43 63 1 23 1 28 0.65 CHY zinc finger zf-CHY PF05495.12 75 CP009044_00034 - 166 0.35 11.4 10.0 2 2 0.00013 0.22 12.0 1.4 22 74 25 73 23 74 0.86 CHY zinc finger Ac81 PF05820.11 181 CP009044_00034 - 166 0.92 9.0 4.8 1 2 0.002 3.3 7.2 2.3 90 119 14 47 3 59 0.71 Baculoviridae AC81 Ac81 PF05820.11 181 CP009044_00034 - 166 0.92 9.0 4.8 2 2 0.069 1.1e+02 2.2 0.0 91 113 66 88 60 91 0.82 Baculoviridae AC81 zf-C3HC4_3 PF13920.6 50 CP009044_00034 - 166 1.2 9.0 10.5 1 2 0.0057 9.4 6.2 5.7 4 33 1 32 1 38 0.74 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_3 PF13920.6 50 CP009044_00034 - 166 1.2 9.0 10.5 2 2 0.012 20 5.1 0.1 24 35 66 77 45 82 0.66 Zinc finger, C3HC4 type (RING finger) zf-RING_4 PF14570.6 48 CP009044_00034 - 166 1.5 8.7 13.2 1 2 0.0013 2.1 8.2 6.1 9 35 8 35 1 40 0.73 RING/Ubox like zinc-binding domain zf-RING_4 PF14570.6 48 CP009044_00034 - 166 1.5 8.7 13.2 2 2 0.018 29 4.6 0.6 24 35 67 78 43 84 0.86 RING/Ubox like zinc-binding domain Tnp_zf-ribbon_2 PF13842.6 31 CP009044_00034 - 166 8.2 7.3 10.6 1 2 0.0017 2.7 8.8 5.2 6 31 2 28 1 28 0.77 DDE_Tnp_1-like zinc-ribbon Tnp_zf-ribbon_2 PF13842.6 31 CP009044_00034 - 166 8.2 7.3 10.6 2 2 0.52 8.5e+02 0.9 0.2 17 22 66 71 57 78 0.67 DDE_Tnp_1-like zinc-ribbon zf-ACC PF17848.1 26 CP009044_00037 - 363 0.098 12.8 3.8 1 2 0.00089 8 6.6 0.5 19 26 85 92 83 92 0.86 Acetyl-coA carboxylase zinc finger domain zf-ACC PF17848.1 26 CP009044_00037 - 363 0.098 12.8 3.8 2 2 0.0016 15 5.8 0.2 4 11 107 114 104 115 0.78 Acetyl-coA carboxylase zinc finger domain DZR PF12773.7 49 CP009044_00037 - 363 6.7 6.8 10.9 1 1 0.0035 31 4.7 10.9 15 36 89 112 79 137 0.54 Double zinc ribbon Toprim_2 PF13155.6 90 CP009044_00039 - 381 1e-14 54.7 0.0 1 2 4.8 1.7e+04 -3.7 0.0 42 55 113 126 98 127 0.62 Toprim-like Toprim_2 PF13155.6 90 CP009044_00039 - 381 1e-14 54.7 0.0 2 2 7.6e-18 2.7e-14 53.3 0.0 1 90 285 370 285 370 0.94 Toprim-like Toprim_3 PF13362.6 95 CP009044_00039 - 381 1.6e-08 34.8 0.0 1 1 8.3e-12 3e-08 33.9 0.0 2 90 284 371 283 374 0.79 Toprim domain zf-CHC2 PF01807.20 98 CP009044_00039 - 381 4.3e-07 29.7 0.3 1 1 2.7e-10 9.7e-07 28.5 0.3 11 91 10 94 2 100 0.79 CHC2 zinc finger Toprim_4 PF13662.6 89 CP009044_00039 - 381 0.0096 16.4 0.0 1 1 6.6e-06 0.024 15.1 0.0 50 84 318 352 284 356 0.83 Toprim domain DUF3854 PF12965.7 130 CP009044_00039 - 381 0.023 14.7 0.2 1 1 8.2e-05 0.29 11.1 0.2 68 125 321 372 276 376 0.89 Domain of unknown function (DUF3854) N6_N4_Mtase PF01555.18 231 CP009044_00040 - 291 2.4e-05 24.2 0.4 1 2 0.00012 1.1 8.9 0.0 197 223 41 67 30 69 0.87 DNA methylase N6_N4_Mtase PF01555.18 231 CP009044_00040 - 291 2.4e-05 24.2 0.4 2 2 4.7e-06 0.042 13.5 0.2 3 116 86 228 84 287 0.64 DNA methylase DpnI_C PF17726.1 70 CP009044_00040 - 291 0.00013 22.0 0.3 1 1 4e-08 0.00036 20.6 0.3 5 53 231 279 228 281 0.78 Dam-replacing HTH domain zf-BED PF02892.15 44 CP009044_00041 - 113 0.042 13.9 0.0 1 1 5.4e-06 0.097 12.7 0.0 6 25 54 73 50 80 0.89 BED zinc finger DUF4258 PF14076.6 63 CP009044_00045 - 77 0.069 13.5 0.3 1 1 9e-05 0.81 10.1 0.3 2 60 9 65 9 67 0.65 Domain of unknown function (DUF4258) Methyltransf_23 PF13489.6 165 CP009044_00045 - 77 0.15 11.9 0.0 1 1 1.9e-05 0.17 11.7 0.0 9 45 26 60 11 69 0.82 Methyltransferase domain MPTase-PolyVal PF18818.1 126 CP009044_00046 - 341 8.2e-48 161.6 0.0 1 1 4.1e-51 1.2e-47 161.0 0.0 2 126 160 284 159 284 0.99 Metallopeptidase superfamily domain DUF1738 PF08401.11 128 CP009044_00046 - 341 1.1e-33 116.1 0.1 1 1 6.4e-37 1.9e-33 115.3 0.1 3 128 17 135 15 135 0.91 Domain of unknown function (DUF1738) EpmC PF04315.12 163 CP009044_00046 - 341 0.00047 19.9 0.0 1 1 2.9e-07 0.00087 19.0 0.0 5 53 163 214 159 229 0.83 Elongation factor P hydroxylase Tox-MPTase3 PF15639.6 137 CP009044_00046 - 341 0.0042 16.9 0.1 1 1 3.1e-06 0.0092 15.8 0.1 100 135 202 239 184 240 0.75 Metallopeptidase toxin 3 DUF4127 PF13552.6 490 CP009044_00046 - 341 0.021 13.5 0.1 1 1 9.5e-06 0.028 13.0 0.1 123 242 199 338 189 341 0.85 Protein of unknown function (DUF4127) GP88 PF17338.2 231 CP009044_00046 - 341 0.022 14.2 0.1 1 2 0.92 2.7e+03 -2.5 0.0 61 95 8 40 4 69 0.71 Gene product 88 GP88 PF17338.2 231 CP009044_00046 - 341 0.022 14.2 0.1 2 2 2e-05 0.059 12.8 0.0 103 159 262 319 234 330 0.86 Gene product 88 Fucose_iso_N2 PF07882.12 180 CP009044_00047 - 133 0.0057 16.2 0.8 1 2 0.2 1.2e+03 -1.1 0.0 144 163 16 35 10 44 0.76 L-fucose isomerase, second N-terminal domain Fucose_iso_N2 PF07882.12 180 CP009044_00047 - 133 0.0057 16.2 0.8 2 2 1.7e-06 0.01 15.5 0.3 26 97 47 121 34 129 0.82 L-fucose isomerase, second N-terminal domain RNA_pol_Rpb8 PF03870.15 139 CP009044_00047 - 133 0.056 13.6 0.1 1 1 1.3e-05 0.076 13.2 0.1 31 71 58 98 46 119 0.75 RNA polymerase Rpb8 s48_45 PF07422.13 108 CP009044_00047 - 133 0.082 13.5 0.8 1 2 0.2 1.2e+03 0.1 0.0 33 44 2 13 1 21 0.77 Sexual stage antigen s48/45 domain s48_45 PF07422.13 108 CP009044_00047 - 133 0.082 13.5 0.8 2 2 4.7e-05 0.28 11.8 0.1 25 87 46 118 22 130 0.72 Sexual stage antigen s48/45 domain RecT PF03837.14 199 CP009044_00048 - 281 1.2e-36 126.1 0.3 1 2 2.5e-40 4.5e-36 124.2 0.0 11 192 31 202 23 210 0.91 RecT family RecT PF03837.14 199 CP009044_00048 - 281 1.2e-36 126.1 0.3 2 2 0.037 6.6e+02 -0.4 0.1 109 156 232 278 207 280 0.58 RecT family Cas_Cas4 PF01930.17 162 CP009044_00051 - 359 1.6e-06 28.3 0.2 1 3 5.1 1e+04 -3.6 0.7 109 141 20 52 16 61 0.50 Domain of unknown function DUF83 Cas_Cas4 PF01930.17 162 CP009044_00051 - 359 1.6e-06 28.3 0.2 2 3 7.9e-10 1.6e-06 28.3 0.2 47 160 131 250 79 251 0.77 Domain of unknown function DUF83 Cas_Cas4 PF01930.17 162 CP009044_00051 - 359 1.6e-06 28.3 0.2 3 3 1.5 3e+03 -1.8 0.1 120 145 279 304 256 312 0.62 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 255 CP009044_00051 - 359 8.1e-05 22.7 1.2 1 2 6.6e-08 0.00013 22.0 0.2 101 255 111 251 14 251 0.69 PD-(D/E)XK nuclease superfamily PDDEXK_1 PF12705.7 255 CP009044_00051 - 359 8.1e-05 22.7 1.2 2 2 0.76 1.5e+03 -1.2 0.1 85 114 284 312 258 331 0.45 PD-(D/E)XK nuclease superfamily Nsp1_C PF05064.13 116 CP009044_00051 - 359 0.0026 17.5 0.5 1 2 2.6 5.1e+03 -2.7 0.1 11 26 35 50 24 58 0.54 Nsp1-like C-terminal region Nsp1_C PF05064.13 116 CP009044_00051 - 359 0.0026 17.5 0.5 2 2 1.3e-06 0.0026 17.5 0.5 62 112 253 303 250 308 0.91 Nsp1-like C-terminal region GrpE PF01025.19 166 CP009044_00051 - 359 0.011 15.4 1.7 1 2 0.26 5.1e+02 0.2 0.7 32 70 15 53 11 63 0.75 GrpE GrpE PF01025.19 166 CP009044_00051 - 359 0.011 15.4 1.7 2 2 5.7e-06 0.011 15.4 1.7 12 65 262 315 254 324 0.90 GrpE CENP-F_leu_zip PF10473.9 140 CP009044_00051 - 359 0.035 14.1 9.6 1 2 0.037 73 3.4 0.5 34 59 16 41 12 53 0.74 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CENP-F_leu_zip PF10473.9 140 CP009044_00051 - 359 0.035 14.1 9.6 2 2 2.2e-05 0.043 13.8 3.0 38 99 234 295 220 302 0.89 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4407 PF14362.6 298 CP009044_00051 - 359 0.058 12.7 1.6 1 1 5.3e-05 0.1 11.9 1.6 102 168 202 297 200 320 0.85 Domain of unknown function (DUF4407) CdvA PF18822.1 123 CP009044_00051 - 359 0.2 11.5 8.1 1 2 0.006 12 5.7 0.9 79 104 17 42 14 59 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP009044_00051 - 359 0.2 11.5 8.1 2 2 0.00062 1.2 8.9 1.2 26 60 266 300 264 323 0.84 CdvA-like coiled-coil domain DUF615 PF04751.14 154 CP009044_00051 - 359 1.7 8.6 7.9 1 3 3.3 6.6e+03 -3.0 0.1 43 63 29 48 17 72 0.53 Protein of unknown function (DUF615) DUF615 PF04751.14 154 CP009044_00051 - 359 1.7 8.6 7.9 2 3 0.53 1.1e+03 -0.5 0.1 53 74 214 235 171 243 0.64 Protein of unknown function (DUF615) DUF615 PF04751.14 154 CP009044_00051 - 359 1.7 8.6 7.9 3 3 8.7e-05 0.17 11.8 1.5 14 64 263 316 261 353 0.80 Protein of unknown function (DUF615) CHASE3 PF05227.13 138 CP009044_00051 - 359 6.7 6.6 8.3 1 3 0.087 1.7e+02 2.0 0.0 40 120 14 91 11 109 0.64 CHASE3 domain CHASE3 PF05227.13 138 CP009044_00051 - 359 6.7 6.6 8.3 2 3 2.4 4.8e+03 -2.6 0.3 81 100 215 234 207 239 0.48 CHASE3 domain CHASE3 PF05227.13 138 CP009044_00051 - 359 6.7 6.6 8.3 3 3 0.00075 1.5 8.7 0.7 45 95 254 304 252 320 0.82 CHASE3 domain SSB PF00436.25 104 CP009044_00053 - 175 1.8e-29 101.9 0.2 1 1 3.6e-33 3.2e-29 101.0 0.2 2 104 3 105 2 105 0.99 Single-strand binding protein family Pex14_N PF04695.13 157 CP009044_00053 - 175 0.29 11.8 7.3 1 1 5.1e-05 0.46 11.1 7.3 63 126 96 161 74 169 0.50 Peroxisomal membrane anchor protein (Pex14p) conserved region Toxin-JAB1 PF15659.6 86 CP009044_00054 - 79 0.088 13.2 0.0 1 1 5.9e-06 0.11 12.9 0.0 32 83 14 66 4 69 0.79 JAB-like toxin 1 Dus PF01207.17 310 CP009044_00058 - 158 0.03 13.4 0.1 1 1 2.2e-06 0.04 13.0 0.1 93 155 53 115 33 116 0.92 Dihydrouridine synthase (Dus) SLT PF01464.20 117 CP009044_00059 - 142 4.6e-19 68.2 0.0 1 1 6.8e-23 6.1e-19 67.8 0.0 2 96 21 117 20 123 0.95 Transglycosylase SLT domain Lys PF00062.20 124 CP009044_00059 - 142 0.012 15.8 0.0 1 1 2.1e-06 0.019 15.2 0.0 30 61 38 69 24 83 0.88 C-type lysozyme/alpha-lactalbumin family DUF480 PF04337.12 149 CP009044_00060 - 103 0.0017 18.4 0.1 1 1 2.1e-07 0.0019 18.3 0.1 68 148 3 83 1 84 0.90 Protein of unknown function, DUF480 RdRP_1 PF00680.20 482 CP009044_00060 - 103 0.027 13.0 0.1 1 1 3.4e-06 0.03 12.8 0.1 48 121 11 85 2 98 0.84 RNA dependent RNA polymerase DUF3267 PF11667.8 108 CP009044_00061 - 186 0.042 14.1 8.6 1 2 0.46 4.1e+03 -1.9 0.0 62 84 11 39 5 44 0.51 Putative zincin peptidase DUF3267 PF11667.8 108 CP009044_00061 - 186 0.042 14.1 8.6 2 2 6e-06 0.053 13.8 5.1 6 98 43 154 38 159 0.78 Putative zincin peptidase Peptidase_M50B PF13398.6 200 CP009044_00061 - 186 0.14 11.8 7.8 1 1 0.00027 2.4 7.7 7.7 16 52 31 69 9 184 0.65 Peptidase M50B-like GGDEF PF00990.21 161 CP009044_00062 - 800 5e-34 117.4 0.6 1 1 4.5e-37 1.1e-33 116.2 0.6 12 161 420 567 417 567 0.89 Diguanylate cyclase, GGDEF domain HD PF01966.22 122 CP009044_00062 - 800 2.7e-05 24.4 0.4 1 4 3.9 9.9e+03 -3.3 0.0 77 98 97 125 81 148 0.62 HD domain HD PF01966.22 122 CP009044_00062 - 800 2.7e-05 24.4 0.4 2 4 1.1e-08 2.7e-05 24.4 0.4 2 95 226 322 225 383 0.71 HD domain HD PF01966.22 122 CP009044_00062 - 800 2.7e-05 24.4 0.4 3 4 1.2 3.2e+03 -1.7 0.1 57 113 530 592 507 596 0.60 HD domain HD PF01966.22 122 CP009044_00062 - 800 2.7e-05 24.4 0.4 4 4 1.9 4.9e+03 -2.3 0.0 64 95 689 722 647 736 0.74 HD domain SporV_AA PF12164.8 89 CP009044_00062 - 800 0.039 14.3 4.1 1 3 2.2e-05 0.057 13.8 0.2 8 48 92 132 91 153 0.85 Stage V sporulation protein AA SporV_AA PF12164.8 89 CP009044_00062 - 800 0.039 14.3 4.1 2 3 1.1 2.8e+03 -1.3 0.1 16 45 391 420 383 430 0.84 Stage V sporulation protein AA SporV_AA PF12164.8 89 CP009044_00062 - 800 0.039 14.3 4.1 3 3 1 2.6e+03 -1.1 0.0 33 56 548 570 539 572 0.72 Stage V sporulation protein AA STAR_dimer PF16544.5 53 CP009044_00062 - 800 0.044 13.4 0.3 1 2 5.6e-05 0.14 11.7 0.1 16 37 150 172 146 173 0.78 Homodimerisation region of STAR domain protein STAR_dimer PF16544.5 53 CP009044_00062 - 800 0.044 13.4 0.3 2 2 4.5 1.2e+04 -4.0 0.0 12 26 408 422 407 423 0.81 Homodimerisation region of STAR domain protein Toxin-deaminase PF14424.6 142 CP009044_00062 - 800 0.045 13.9 0.6 1 3 1.7e-05 0.045 13.9 0.6 11 116 91 200 86 209 0.88 The BURPS668_1122 family of deaminases Toxin-deaminase PF14424.6 142 CP009044_00062 - 800 0.045 13.9 0.6 2 3 1.6 4e+03 -2.2 0.2 33 57 376 398 349 444 0.60 The BURPS668_1122 family of deaminases Toxin-deaminase PF14424.6 142 CP009044_00062 - 800 0.045 13.9 0.6 3 3 0.01 26 4.9 3.4 40 106 613 683 575 692 0.76 The BURPS668_1122 family of deaminases Stealth_CR4 PF17103.5 55 CP009044_00062 - 800 0.081 12.8 0.1 1 2 0.0024 6.1 6.8 0.0 3 31 355 387 353 388 0.73 Stealth protein CR4, conserved region 4 Stealth_CR4 PF17103.5 55 CP009044_00062 - 800 0.081 12.8 0.1 2 2 0.041 1e+02 2.9 0.0 9 34 451 477 448 479 0.79 Stealth protein CR4, conserved region 4 SurA_N_2 PF13623.6 145 CP009044_00062 - 800 4.1 7.3 12.7 1 4 0.043 1.1e+02 2.6 0.1 11 83 69 145 62 165 0.72 SurA N-terminal domain SurA_N_2 PF13623.6 145 CP009044_00062 - 800 4.1 7.3 12.7 2 4 0.0009 2.3 8.1 0.5 69 109 379 419 353 453 0.80 SurA N-terminal domain SurA_N_2 PF13623.6 145 CP009044_00062 - 800 4.1 7.3 12.7 3 4 0.022 56 3.6 0.0 50 70 500 520 472 532 0.84 SurA N-terminal domain SurA_N_2 PF13623.6 145 CP009044_00062 - 800 4.1 7.3 12.7 4 4 6 1.5e+04 -4.3 0.6 66 86 606 626 601 633 0.49 SurA N-terminal domain TrwB_AAD_bind PF10412.9 386 CP009044_00063 - 458 5.1e-16 58.6 0.0 1 2 2.1e-09 3.1e-06 26.3 0.0 15 55 49 89 40 210 0.88 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP009044_00063 - 458 5.1e-16 58.6 0.0 2 2 1.1e-10 1.7e-07 30.5 0.0 213 324 278 388 213 402 0.84 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 469 CP009044_00063 - 458 2e-11 43.4 0.6 1 1 1.9e-14 2.8e-11 42.9 0.6 44 385 35 388 5 421 0.79 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP009044_00063 - 458 4.3e-10 39.7 0.0 1 1 5.6e-13 8.3e-10 38.7 0.0 1 83 309 390 309 421 0.93 TraM recognition site of TraD and TraG DUF87 PF01935.17 227 CP009044_00063 - 458 0.0005 20.2 0.3 1 1 3e-06 0.0045 17.1 0.3 24 206 50 268 43 292 0.48 Helicase HerA, central domain Zeta_toxin PF06414.12 199 CP009044_00063 - 458 0.0014 17.9 0.0 1 1 2.4e-06 0.0035 16.6 0.0 9 51 43 85 35 87 0.82 Zeta toxin AAA_16 PF13191.6 170 CP009044_00063 - 458 0.0017 18.8 0.0 1 1 2.9e-06 0.0043 17.5 0.0 16 50 41 76 32 108 0.75 AAA ATPase domain ATPase_2 PF01637.18 233 CP009044_00063 - 458 0.0022 18.0 0.0 1 2 6.9e-06 0.01 15.8 0.0 15 58 44 87 35 132 0.83 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 CP009044_00063 - 458 0.0022 18.0 0.0 2 2 2.3 3.5e+03 -2.3 0.0 93 93 283 283 187 332 0.59 ATPase domain predominantly from Archaea DUF853 PF05872.12 504 CP009044_00063 - 458 0.0045 15.6 0.0 1 1 5.5e-06 0.0082 14.8 0.0 18 71 44 99 29 119 0.77 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 362 CP009044_00063 - 458 0.0054 15.7 0.1 1 3 8.3e-05 0.12 11.2 0.0 20 67 48 95 36 133 0.79 AAA-like domain AAA_10 PF12846.7 362 CP009044_00063 - 458 0.0054 15.7 0.1 2 3 2.6 3.9e+03 -3.6 0.0 130 167 197 239 188 254 0.40 AAA-like domain AAA_10 PF12846.7 362 CP009044_00063 - 458 0.0054 15.7 0.1 3 3 0.062 93 1.8 0.0 264 306 327 376 324 387 0.71 AAA-like domain AAA_22 PF13401.6 137 CP009044_00063 - 458 0.011 16.1 0.0 1 1 2.4e-05 0.036 14.3 0.0 5 29 49 73 45 108 0.80 AAA domain FtsK_SpoIIIE PF01580.18 243 CP009044_00063 - 458 0.095 12.0 0.0 1 1 0.00013 0.2 11.0 0.0 38 60 48 70 22 101 0.82 FtsK/SpoIIIE family AAA_19 PF13245.6 146 CP009044_00063 - 458 0.11 12.8 0.0 1 2 0.00022 0.34 11.3 0.0 10 33 49 72 42 87 0.85 AAA domain AAA_19 PF13245.6 146 CP009044_00063 - 458 0.11 12.8 0.0 2 2 8.5 1.3e+04 -3.6 0.0 96 111 302 317 271 328 0.68 AAA domain HD_5 PF13487.6 64 CP009044_00064 - 193 4.6e-06 26.8 0.0 1 1 4.6e-10 8.2e-06 26.0 0.0 1 50 78 125 78 127 0.95 HD domain CLP_protease PF00574.23 182 CP009044_00066 - 229 0.15 12.0 0.3 1 1 1.7e-05 0.3 10.9 0.3 121 166 61 107 55 118 0.82 Clp protease GA-like PF17573.2 50 CP009044_00067 - 74 0.035 14.0 0.4 1 2 2.2e-05 0.19 11.6 0.1 15 32 5 22 1 28 0.90 GA-like domain GA-like PF17573.2 50 CP009044_00067 - 74 0.035 14.0 0.4 2 2 0.066 5.9e+02 0.5 0.0 16 24 44 52 40 59 0.72 GA-like domain Orthopox_A49R PF06489.11 162 CP009044_00067 - 74 0.16 12.2 0.0 1 1 1.8e-05 0.16 12.2 0.0 69 104 31 66 5 72 0.86 Orthopoxvirus A49R protein HTH_3 PF01381.22 55 CP009044_00068 - 76 2.7e-14 52.9 0.0 1 1 2e-17 3.3e-14 52.7 0.0 1 55 14 68 14 68 0.99 Helix-turn-helix HTH_19 PF12844.7 65 CP009044_00068 - 76 7.9e-13 48.2 0.0 1 1 5.4e-16 8.8e-13 48.1 0.0 1 64 11 73 11 74 0.95 Helix-turn-helix domain HTH_31 PF13560.6 64 CP009044_00068 - 76 8.3e-08 32.5 0.0 1 1 5.4e-11 8.8e-08 32.4 0.0 1 40 9 48 9 66 0.89 Helix-turn-helix domain HTH_25 PF13413.6 62 CP009044_00068 - 76 0.0011 18.8 0.0 1 1 9.1e-07 0.0015 18.4 0.0 2 34 14 46 13 51 0.94 Helix-turn-helix domain Phage_CI_repr PF07022.13 65 CP009044_00068 - 76 0.0028 17.7 0.0 1 1 2.6e-06 0.0043 17.1 0.0 2 64 13 75 12 76 0.92 Bacteriophage CI repressor helix-turn-helix domain Pou PF00157.17 72 CP009044_00068 - 76 0.026 14.5 0.1 1 1 2.3e-05 0.037 14.0 0.1 3 34 4 35 2 44 0.86 Pou domain - N-terminal to homeobox domain HTH_37 PF13744.6 80 CP009044_00068 - 76 0.047 13.7 0.0 1 1 3.2e-05 0.052 13.5 0.0 21 54 12 45 2 57 0.86 Helix-turn-helix domain MqsA_antitoxin PF15731.5 131 CP009044_00068 - 76 0.055 13.6 0.0 1 1 3.9e-05 0.064 13.4 0.0 71 117 11 57 3 67 0.89 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_23 PF13384.6 50 CP009044_00068 - 76 0.064 13.1 0.0 1 2 8.8e-05 0.14 12.0 0.0 10 37 14 42 12 50 0.84 Homeodomain-like domain HTH_23 PF13384.6 50 CP009044_00068 - 76 0.064 13.1 0.0 2 2 2.7 4.5e+03 -2.3 0.0 25 33 59 67 56 68 0.77 Homeodomain-like domain WYL_3 PF18488.1 63 CP009044_00068 - 76 0.081 13.3 0.0 1 1 7.6e-05 0.12 12.7 0.0 8 41 14 49 10 51 0.79 WYL domain YdaS_antitoxin PF15943.5 65 CP009044_00068 - 76 0.1 12.4 0.0 1 1 8.3e-05 0.14 12.1 0.0 9 41 23 55 14 66 0.78 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT SNase PF00565.17 108 CP009044_00069 - 172 4.4e-17 62.5 0.1 1 1 3.1e-21 5.5e-17 62.2 0.1 2 107 43 161 42 162 0.91 Staphylococcal nuclease homologue AAA_25 PF13481.6 194 CP009044_00072 - 389 5.9e-17 61.9 0.0 1 1 1.1e-20 9.6e-17 61.2 0.0 20 193 154 319 144 320 0.83 AAA domain DnaB PF00772.21 103 CP009044_00072 - 389 1.3e-06 28.4 0.3 1 1 3.2e-10 2.9e-06 27.3 0.3 4 101 7 95 4 97 0.85 DnaB-like helicase N terminal domain Thioredoxin_2 PF13098.6 109 CP009044_00073 - 139 2.7e-05 24.6 0.2 1 1 3.7e-08 0.00022 21.6 0.2 1 109 33 126 33 126 0.75 Thioredoxin-like domain Thioredoxin_7 PF13899.6 83 CP009044_00073 - 139 3.2e-05 24.0 0.0 1 1 7.1e-09 4.3e-05 23.6 0.0 8 83 28 104 22 104 0.80 Thioredoxin-like Thioredox_DsbH PF03190.15 163 CP009044_00073 - 139 0.00012 22.1 0.1 1 1 5.1e-08 0.0003 20.8 0.1 28 79 28 79 23 111 0.90 Protein of unknown function, DUF255 VSG_B PF13206.6 356 CP009044_00074 - 61 0.018 14.3 0.9 1 1 3e-06 0.018 14.3 0.9 124 177 4 57 1 61 0.86 Trypanosomal VSG domain HSCB_C PF07743.13 76 CP009044_00074 - 61 0.019 15.5 2.0 1 1 3.4e-06 0.021 15.3 2.0 10 57 1 50 1 58 0.83 HSCB C-terminal oligomerisation domain YtxH PF12732.7 75 CP009044_00074 - 61 0.034 14.7 0.1 1 1 7.6e-06 0.045 14.3 0.1 30 71 3 44 1 46 0.89 YtxH-like protein TrbC_Ftype PF09673.10 112 CP009044_00075 - 313 9.3e-17 61.1 0.0 1 1 2.4e-20 2.2e-16 59.9 0.0 1 112 159 288 159 288 0.87 Type-F conjugative transfer system pilin assembly protein DUF3388 PF11868.8 190 CP009044_00075 - 313 0.035 13.4 0.2 1 2 0.051 4.6e+02 0.0 0.1 92 134 93 136 87 141 0.82 Protein of unknown function (DUF3388) DUF3388 PF11868.8 190 CP009044_00075 - 313 0.035 13.4 0.2 2 2 3e-05 0.27 10.5 0.0 79 132 155 209 152 213 0.82 Protein of unknown function (DUF3388) EAL PF00563.20 238 CP009044_00076 - 262 3.4e-28 98.8 0.0 1 1 2.5e-32 4.6e-28 98.4 0.0 3 238 32 253 30 253 0.84 EAL domain TraU PF06834.11 307 CP009044_00077 - 331 8.2e-100 334.0 0.4 1 1 5.2e-104 9.4e-100 333.8 0.4 2 306 34 330 33 331 0.95 TraU protein TraF PF13728.6 224 CP009044_00079 - 255 3e-30 105.7 10.7 1 1 5.8e-34 3.5e-30 105.5 10.7 1 222 29 241 29 243 0.88 F plasmid transfer operon protein KaiB PF07689.12 82 CP009044_00079 - 255 0.055 13.2 0.2 1 2 0.025 1.5e+02 2.2 0.1 6 43 86 123 82 127 0.87 KaiB domain KaiB PF07689.12 82 CP009044_00079 - 255 0.055 13.2 0.2 2 2 0.00025 1.5 8.6 0.0 26 53 183 210 164 211 0.79 KaiB domain ASC PF00858.24 443 CP009044_00079 - 255 0.72 8.7 5.6 1 1 0.00015 0.91 8.4 5.6 95 212 36 197 14 235 0.61 Amiloride-sensitive sodium channel TraG_N PF07916.11 467 CP009044_00080 - 1166 1.7e-51 175.6 17.8 1 3 1.9e-55 1.7e-51 175.6 17.8 2 466 23 474 22 475 0.85 TraG-like protein, N-terminal region TraG_N PF07916.11 467 CP009044_00080 - 1166 1.7e-51 175.6 17.8 2 3 0.018 1.6e+02 0.9 6.0 215 337 504 625 495 628 0.60 TraG-like protein, N-terminal region TraG_N PF07916.11 467 CP009044_00080 - 1166 1.7e-51 175.6 17.8 3 3 0.8 7.2e+03 -4.5 1.4 252 299 684 730 670 749 0.43 TraG-like protein, N-terminal region CdiI_2 PF18593.1 91 CP009044_00080 - 1166 0.18 12.5 0.8 1 2 0.0012 11 6.7 0.4 26 74 910 959 904 963 0.88 CdiI immunity protein CdiI_2 PF18593.1 91 CP009044_00080 - 1166 0.18 12.5 0.8 2 2 0.015 1.3e+02 3.3 0.0 10 45 962 999 956 1003 0.91 CdiI immunity protein YfhO PF09586.10 839 CP009044_00081 - 100 0.016 13.5 2.6 1 1 3.1e-06 0.018 13.3 2.6 185 264 18 94 10 97 0.84 Bacterial membrane protein YfhO DUF1189 PF06691.11 244 CP009044_00081 - 100 0.017 14.7 2.0 1 1 3.4e-06 0.02 14.5 2.0 20 62 12 57 2 99 0.69 Protein of unknown function (DUF1189) Herpes_LMP1 PF05297.11 386 CP009044_00081 - 100 0.068 12.4 3.2 1 1 1.4e-05 0.083 12.1 3.2 24 75 17 72 11 78 0.79 Herpesvirus latent membrane protein 1 (LMP1) RHH_3 PF12651.7 44 CP009044_00082 - 100 0.0013 18.6 1.3 1 2 0.9 8e+03 -3.1 0.0 9 17 22 30 19 32 0.59 Ribbon-helix-helix domain RHH_3 PF12651.7 44 CP009044_00082 - 100 0.0013 18.6 1.3 2 2 3.1e-07 0.0028 17.6 0.8 3 37 43 77 41 78 0.92 Ribbon-helix-helix domain DUF5123 PF17161.4 115 CP009044_00082 - 100 0.058 14.5 0.9 1 1 7.6e-06 0.068 14.2 0.9 22 79 12 70 3 89 0.74 Domain of unknown function (DUF5123) UvrB_inter PF17757.1 91 CP009044_00083 - 198 0.052 13.7 0.2 1 1 7.7e-06 0.14 12.4 0.2 2 73 6 75 5 90 0.84 UvrB interaction domain ALP_N PF17989.1 147 CP009044_00085 - 305 5.9e-15 55.7 0.1 1 1 1.9e-18 1.1e-14 54.8 0.1 1 147 11 144 11 144 0.78 Actin like proteins N terminal domain FtsA PF14450.6 103 CP009044_00085 - 305 0.00012 22.5 0.1 1 2 0.0031 19 5.8 0.0 1 17 10 26 10 41 0.87 Cell division protein FtsA FtsA PF14450.6 103 CP009044_00085 - 305 0.00012 22.5 0.1 2 2 5.2e-06 0.031 14.7 0.0 1 52 159 214 159 293 0.75 Cell division protein FtsA DUF2800 PF10926.8 363 CP009044_00085 - 305 0.12 11.6 0.1 1 2 0.27 1.6e+03 -2.0 0.0 287 322 101 135 86 144 0.79 Protein of unknown function (DUF2800) DUF2800 PF10926.8 363 CP009044_00085 - 305 0.12 11.6 0.1 2 2 6.1e-05 0.37 10.0 0.1 49 107 203 268 184 270 0.72 Protein of unknown function (DUF2800) DBR1 PF05011.13 139 CP009044_00086 - 97 0.0072 16.8 1.1 1 1 4.5e-07 0.0081 16.6 1.1 67 128 32 93 6 95 0.78 Lariat debranching enzyme, C-terminal domain DUF3400 PF11880.8 45 CP009044_00087 - 179 0.1 12.1 0.1 1 1 2.3e-05 0.2 11.2 0.1 11 37 100 125 93 128 0.86 Domain of unknown function (DUF3400) DUF2786 PF10979.8 40 CP009044_00087 - 179 0.18 11.8 1.3 1 1 4.1e-05 0.37 10.7 1.3 4 37 10 42 7 45 0.89 Protein of unknown function (DUF2786) Acetyltransf_9 PF13527.7 128 CP009044_00088 - 90 0.099 12.7 0.0 1 1 9.1e-06 0.16 12.0 0.0 78 112 4 38 1 73 0.90 Acetyltransferase (GNAT) domain Ring_hydroxyl_B PF00866.18 144 CP009044_00089 - 107 0.15 12.1 0.0 1 1 1.2e-05 0.22 11.6 0.0 75 110 10 47 5 54 0.84 Ring hydroxylating beta subunit SSXT PF05030.12 62 CP009044_00090 - 121 0.022 14.4 0.0 1 1 8.3e-06 0.037 13.6 0.0 4 26 27 49 24 77 0.89 SSXT protein (N-terminal region) NMT PF01233.19 160 CP009044_00090 - 121 0.092 12.6 0.6 1 1 2.5e-05 0.11 12.3 0.6 11 45 5 39 1 109 0.88 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain bZIP_2 PF07716.15 54 CP009044_00090 - 121 0.13 12.4 0.3 1 2 2.8e-05 0.13 12.4 0.3 23 52 21 50 19 52 0.92 Basic region leucine zipper bZIP_2 PF07716.15 54 CP009044_00090 - 121 0.13 12.4 0.3 2 2 2 9.1e+03 -3.2 0.2 31 33 67 69 60 76 0.47 Basic region leucine zipper BfiI_DBD PF18243.1 164 CP009044_00090 - 121 0.17 11.5 0.0 1 1 4.5e-05 0.2 11.2 0.0 28 54 48 74 23 88 0.78 Metal-independent restriction enzyme BfiI DNA binding domain AbiH PF14253.6 267 CP009044_00092 - 141 0.023 14.6 1.3 1 1 3.3e-06 0.03 14.2 1.3 105 182 25 123 2 140 0.57 Bacteriophage abortive infection AbiH PH_12 PF16457.5 134 CP009044_00092 - 141 0.1 13.1 0.2 1 2 9.3e-05 0.83 10.2 0.1 90 134 7 59 2 59 0.70 Pleckstrin homology domain PH_12 PF16457.5 134 CP009044_00092 - 141 0.1 13.1 0.2 2 2 0.072 6.4e+02 0.8 0.0 121 133 95 107 76 108 0.86 Pleckstrin homology domain ANT PF03374.14 108 CP009044_00093 - 70 0.041 14.2 0.0 1 1 7.5e-06 0.045 14.1 0.0 24 83 11 68 6 70 0.91 Phage antirepressor protein KilAC domain PhetRS_B1 PF18262.1 83 CP009044_00093 - 70 0.062 13.5 0.2 1 1 1.3e-05 0.076 13.2 0.2 4 48 20 64 18 70 0.85 Phe-tRNA synthetase beta subunit B1 domain HTH_28 PF13518.6 52 CP009044_00093 - 70 0.1 12.7 0.0 1 1 2.5e-05 0.15 12.2 0.0 11 33 9 31 5 33 0.87 Helix-turn-helix domain TMEM51 PF15345.6 238 CP009044_00094 - 55 0.11 12.3 0.0 1 1 6.4e-06 0.12 12.3 0.0 66 97 5 38 3 50 0.80 Transmembrane protein 51 AAA_19 PF13245.6 146 CP009044_00095 - 484 2.8e-13 50.4 0.0 1 1 4.2e-16 7.5e-13 49.0 0.0 1 146 7 233 7 233 0.86 AAA domain UvrD-helicase PF00580.21 315 CP009044_00095 - 484 4.2e-13 49.5 7.9 1 2 2.1e-11 3.8e-08 33.2 2.3 254 303 190 236 3 240 0.66 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 CP009044_00095 - 484 4.2e-13 49.5 7.9 2 2 0.49 8.8e+02 -0.8 0.3 172 199 375 402 287 479 0.64 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 349 CP009044_00095 - 484 3.2e-12 46.5 2.8 1 2 0.45 8.1e+02 -0.9 0.0 264 294 45 76 31 77 0.80 UvrD-like helicase C-terminal domain UvrD_C PF13361.6 349 CP009044_00095 - 484 3.2e-12 46.5 2.8 2 2 6.5e-15 1.2e-11 44.7 1.9 236 344 347 463 292 465 0.75 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 52 CP009044_00095 - 484 5.1e-09 35.8 0.0 1 2 1.1 2e+03 -1.3 0.0 14 28 14 28 13 48 0.80 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 52 CP009044_00095 - 484 5.1e-09 35.8 0.0 2 2 1.6e-11 2.9e-08 33.4 0.0 5 51 408 463 405 463 0.84 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 234 CP009044_00095 - 484 1.1e-08 35.1 0.7 1 4 0.0092 17 5.1 0.0 2 23 20 44 19 82 0.70 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 CP009044_00095 - 484 1.1e-08 35.1 0.7 2 4 3.4 6.1e+03 -3.3 0.0 121 145 108 131 101 154 0.67 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 CP009044_00095 - 484 1.1e-08 35.1 0.7 3 4 3.1e-06 0.0055 16.5 0.0 45 141 176 265 156 313 0.76 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 CP009044_00095 - 484 1.1e-08 35.1 0.7 4 4 0.00026 0.47 10.2 0.0 183 231 395 462 309 464 0.74 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 192 CP009044_00095 - 484 0.00014 21.6 0.1 1 3 1.3e-06 0.0023 17.7 0.0 2 68 3 64 2 97 0.74 AAA domain AAA_30 PF13604.6 192 CP009044_00095 - 484 0.00014 21.6 0.1 2 3 0.55 9.9e+02 -0.7 0.0 90 127 194 227 166 260 0.73 AAA domain AAA_30 PF13604.6 192 CP009044_00095 - 484 0.00014 21.6 0.1 3 3 0.42 7.6e+02 -0.3 0.0 148 175 371 398 359 410 0.83 AAA domain PhoH PF02562.16 205 CP009044_00095 - 484 0.00093 18.7 0.0 1 2 0.0086 16 4.9 0.0 6 34 4 31 1 54 0.81 PhoH-like protein PhoH PF02562.16 205 CP009044_00095 - 484 0.00093 18.7 0.0 2 2 0.0001 0.18 11.2 0.0 122 181 195 248 190 267 0.74 PhoH-like protein ResIII PF04851.15 171 CP009044_00095 - 484 0.011 15.7 5.8 1 2 1.5e-05 0.027 14.5 1.5 25 141 17 201 1 236 0.68 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP009044_00095 - 484 0.011 15.7 5.8 2 2 0.18 3.3e+02 1.2 0.2 97 140 363 409 323 431 0.59 Type III restriction enzyme, res subunit AAA_11 PF13086.6 261 CP009044_00095 - 484 0.017 15.0 0.3 1 3 0.0034 6.1 6.6 0.0 18 56 17 63 3 68 0.65 AAA domain AAA_11 PF13086.6 261 CP009044_00095 - 484 0.017 15.0 0.3 2 3 0.018 31 4.2 0.0 210 253 185 227 179 227 0.84 AAA domain AAA_11 PF13086.6 261 CP009044_00095 - 484 0.017 15.0 0.3 3 3 0.3 5.4e+02 0.2 0.1 124 182 380 435 331 452 0.55 AAA domain OMPdecase PF00215.24 225 CP009044_00095 - 484 0.11 12.1 0.1 1 2 0.063 1.1e+02 2.2 0.0 88 133 17 63 4 97 0.81 Orotidine 5'-phosphate decarboxylase / HUMPS family OMPdecase PF00215.24 225 CP009044_00095 - 484 0.11 12.1 0.1 2 2 0.0015 2.7 7.5 0.0 64 144 351 478 350 481 0.89 Orotidine 5'-phosphate decarboxylase / HUMPS family RNase_T PF00929.24 165 CP009044_00097 - 100 0.036 14.6 0.1 1 1 2.3e-06 0.04 14.4 0.1 58 116 12 69 2 89 0.79 Exonuclease DUF1722 PF08349.11 117 CP009044_00098 - 67 0.11 12.8 0.0 1 1 7e-06 0.13 12.6 0.0 36 96 4 64 2 66 0.90 Protein of unknown function (DUF1722) DUF460 PF04312.13 141 CP009044_00100 - 144 0.1 12.3 0.0 1 1 7.4e-06 0.13 11.9 0.0 46 97 6 61 3 86 0.77 Protein of unknown function (DUF460) DUF5643 PF18705.1 115 CP009044_00103 - 84 0.13 12.3 0.0 1 1 8.9e-06 0.16 12.0 0.0 47 80 30 56 9 64 0.66 Family of unknown function (DUF5643) MrpF_PhaF PF04066.13 53 CP009044_00106 - 93 0.01 16.2 1.3 1 2 2.2e-06 0.01 16.2 1.3 33 49 4 20 1 22 0.94 Multiple resistance and pH regulation protein F (MrpF / PhaF) MrpF_PhaF PF04066.13 53 CP009044_00106 - 93 0.01 16.2 1.3 2 2 1 4.6e+03 -1.9 2.4 45 45 56 56 38 78 0.61 Multiple resistance and pH regulation protein F (MrpF / PhaF) UPF0242 PF06785.11 193 CP009044_00106 - 93 0.026 14.6 1.1 1 1 6.2e-06 0.028 14.5 1.1 25 62 24 79 3 91 0.82 Uncharacterised protein family (UPF0242) N-terminus UPF0016 PF01169.19 75 CP009044_00106 - 93 0.039 14.3 7.1 1 2 2e-05 0.089 13.1 0.8 35 75 5 56 3 56 0.92 Uncharacterized protein family UPF0016 UPF0016 PF01169.19 75 CP009044_00106 - 93 0.039 14.3 7.1 2 2 0.01 47 4.4 1.5 29 51 57 79 56 92 0.79 Uncharacterized protein family UPF0016 TrbC PF04956.13 99 CP009044_00106 - 93 1.2 9.4 11.4 1 1 0.00029 1.3 9.3 11.4 15 99 5 88 1 88 0.85 TrbC/VIRB2 family TraL PF07178.11 90 CP009044_00107 - 100 2.4e-12 47.2 1.0 1 1 3.1e-16 2.7e-12 47.0 1.0 2 90 9 98 8 98 0.86 TraL protein ThrE PF06738.12 241 CP009044_00107 - 100 0.024 14.0 0.3 1 1 2.9e-06 0.026 13.9 0.3 99 163 14 78 4 83 0.87 Putative threonine/serine exporter TraE PF05309.11 182 CP009044_00108 - 187 2e-34 118.5 1.7 1 1 2.8e-38 2.5e-34 118.3 1.7 2 180 2 180 1 181 0.96 TraE protein MadM PF03818.13 59 CP009044_00108 - 187 0.047 13.6 0.2 1 1 1.4e-05 0.12 12.2 0.2 13 38 22 47 17 49 0.93 Malonate/sodium symporter MadM subunit TraK PF06586.11 231 CP009044_00109 - 257 9.5e-24 84.4 3.7 1 1 4e-27 3.6e-23 82.5 3.7 6 206 5 218 3 233 0.88 TraK protein NusG_II PF07009.11 107 CP009044_00109 - 257 0.32 11.2 4.5 1 2 1.5e-05 0.13 12.4 0.6 4 73 7 85 4 95 0.67 NusG domain II NusG_II PF07009.11 107 CP009044_00109 - 257 0.32 11.2 4.5 2 2 0.13 1.2e+03 -0.3 0.1 27 64 188 206 148 238 0.61 NusG domain II TrbI PF03743.14 187 CP009044_00110 - 427 3.5e-33 115.0 1.1 1 1 2.2e-36 4.8e-33 114.6 1.1 2 186 207 408 206 409 0.94 Bacterial conjugation TrbI-like protein Bap31_Bap29_C PF18035.1 50 CP009044_00110 - 427 0.0036 17.3 1.3 1 1 4.8e-06 0.011 15.7 1.3 16 42 78 111 62 120 0.79 Bap31/Bap29 cytoplasmic coiled-coil domain HALZ PF02183.18 43 CP009044_00110 - 427 0.0052 17.0 2.6 1 1 4.7e-06 0.01 16.0 2.6 19 41 84 106 83 107 0.91 Homeobox associated leucine zipper bZIP_1 PF00170.21 64 CP009044_00110 - 427 0.0093 16.1 2.9 1 1 1.2e-05 0.027 14.6 2.9 33 62 84 113 80 115 0.93 bZIP transcription factor UPF0242 PF06785.11 193 CP009044_00110 - 427 0.046 13.8 1.5 1 1 3.7e-05 0.083 13.0 1.5 36 134 29 131 17 134 0.65 Uncharacterised protein family (UPF0242) N-terminus DivIC PF04977.15 80 CP009044_00110 - 427 0.094 12.5 3.1 1 1 0.0001 0.23 11.2 3.1 18 54 78 114 74 120 0.80 Septum formation initiator FAD-SLDH PF12318.8 161 CP009044_00110 - 427 0.13 12.3 0.8 1 2 0.00012 0.26 11.3 0.2 48 102 72 126 27 132 0.82 Membrane bound FAD containing D-sorbitol dehydrogenase FAD-SLDH PF12318.8 161 CP009044_00110 - 427 0.13 12.3 0.8 2 2 2.1 4.8e+03 -2.5 0.0 106 125 317 337 309 354 0.73 Membrane bound FAD containing D-sorbitol dehydrogenase YabA PF06156.13 102 CP009044_00110 - 427 0.19 12.4 1.5 1 1 0.00021 0.48 11.1 1.5 20 66 75 121 62 133 0.70 Initiation control protein YabA Thioredoxin_2 PF13098.6 109 CP009044_00111 - 271 3.3e-16 59.7 0.1 1 1 3.7e-19 6.6e-16 58.7 0.1 3 100 135 254 133 263 0.92 Thioredoxin-like domain DsbC_N PF10411.9 54 CP009044_00111 - 271 1.3e-07 30.9 0.1 1 1 1.7e-10 3e-07 29.8 0.1 4 51 45 93 42 96 0.93 Disulfide bond isomerase protein N-terminus Thioredoxin_4 PF13462.6 166 CP009044_00111 - 271 1.3e-06 28.7 2.0 1 2 2.1e-06 0.0038 17.4 0.3 7 68 131 188 125 190 0.71 Thioredoxin Thioredoxin_4 PF13462.6 166 CP009044_00111 - 271 1.3e-06 28.7 2.0 2 2 0.00047 0.85 9.8 0.1 93 149 180 241 175 258 0.64 Thioredoxin DSBA PF01323.20 193 CP009044_00111 - 271 1.3e-06 28.3 0.3 1 2 5.7e-06 0.01 15.6 0.1 3 79 142 213 140 215 0.86 DSBA-like thioredoxin domain DSBA PF01323.20 193 CP009044_00111 - 271 1.3e-06 28.3 0.3 2 2 4.4e-05 0.079 12.7 0.0 146 181 211 248 208 263 0.77 DSBA-like thioredoxin domain Glutaredoxin PF00462.24 60 CP009044_00111 - 271 0.0039 17.4 0.3 1 2 2.1e-05 0.038 14.2 0.1 2 22 142 162 141 173 0.84 Glutaredoxin Glutaredoxin PF00462.24 60 CP009044_00111 - 271 0.0039 17.4 0.3 2 2 0.41 7.4e+02 0.5 0.0 36 55 213 238 189 242 0.64 Glutaredoxin ATPgrasp_YheCD PF14398.6 256 CP009044_00111 - 271 0.0088 15.3 0.1 1 1 7.5e-06 0.014 14.7 0.1 159 229 177 246 174 263 0.86 YheC/D like ATP-grasp TraF PF13728.6 224 CP009044_00111 - 271 0.013 15.3 0.1 1 2 0.0035 6.2 6.6 0.0 128 150 136 158 120 165 0.87 F plasmid transfer operon protein TraF PF13728.6 224 CP009044_00111 - 271 0.013 15.3 0.1 2 2 0.0041 7.4 6.3 0.0 185 211 225 251 206 254 0.80 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 76 CP009044_00111 - 271 0.021 14.9 1.1 1 3 0.0066 12 6.0 0.0 5 22 143 161 139 166 0.80 Thioredoxin domain Thioredoxin_3 PF13192.6 76 CP009044_00111 - 271 0.021 14.9 1.1 2 3 0.29 5.2e+02 0.8 0.0 33 53 192 214 177 227 0.69 Thioredoxin domain Thioredoxin_3 PF13192.6 76 CP009044_00111 - 271 0.021 14.9 1.1 3 3 0.0055 9.8 6.3 0.4 17 72 196 256 190 260 0.68 Thioredoxin domain Thioredoxin_8 PF13905.6 95 CP009044_00111 - 271 0.04 14.2 0.4 1 1 0.0001 0.18 12.1 0.4 2 94 138 244 137 246 0.68 Thioredoxin-like Thioredoxin_5 PF13743.6 186 CP009044_00111 - 271 0.071 12.8 0.4 1 2 0.0038 6.9 6.3 0.4 2 24 143 165 142 201 0.80 Thioredoxin Thioredoxin_5 PF13743.6 186 CP009044_00111 - 271 0.071 12.8 0.4 2 2 0.015 27 4.4 0.0 137 170 212 245 175 259 0.70 Thioredoxin TraV PF09676.10 132 CP009044_00112 - 240 0.0043 18.0 5.3 1 1 2.7e-06 0.0097 16.9 5.2 1 51 27 76 27 182 0.79 Type IV conjugative transfer system lipoprotein (TraV) SH3_4 PF06347.13 56 CP009044_00112 - 240 0.0063 16.3 0.0 1 1 3.9e-06 0.014 15.2 0.0 4 52 192 235 190 238 0.91 Bacterial SH3 domain SH3_3 PF08239.11 55 CP009044_00112 - 240 0.013 15.7 0.1 1 1 9e-06 0.032 14.5 0.1 2 45 192 231 191 235 0.91 Bacterial SH3 domain Transketolase_N PF00456.21 334 CP009044_00112 - 240 0.049 12.6 0.3 1 1 2.4e-05 0.085 11.8 0.3 213 292 91 170 65 213 0.80 Transketolase, thiamine diphosphate binding domain Herpes_glycop_D PF01537.17 124 CP009044_00112 - 240 0.052 13.7 0.0 1 1 2.5e-05 0.089 13.0 0.0 35 77 6 48 1 61 0.87 Herpesvirus glycoprotein D/GG/GX domain SH3_3 PF08239.11 55 CP009044_00113 - 191 5.6e-05 23.3 0.1 1 1 1.2e-07 0.00012 22.3 0.1 6 54 136 183 133 184 0.82 Bacterial SH3 domain ADIP PF11559.8 152 CP009044_00113 - 191 0.0013 18.8 3.7 1 1 2.3e-06 0.0023 18.0 3.7 64 123 32 91 22 98 0.86 Afadin- and alpha -actinin-Binding Sec34 PF04136.15 149 CP009044_00113 - 191 0.0038 17.1 1.5 1 1 5.4e-06 0.0054 16.6 1.5 4 64 36 96 33 126 0.89 Sec34-like family CLZ PF16526.5 71 CP009044_00113 - 191 0.0068 16.7 4.4 1 2 0.0018 1.8 9.0 0.0 34 61 31 58 24 60 0.91 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CLZ PF16526.5 71 CP009044_00113 - 191 0.0068 16.7 4.4 2 2 0.0048 4.8 7.6 2.2 30 57 62 89 59 92 0.75 C-terminal leucine zipper domain of cyclic nucleotide-gated channels SMC_ScpB PF04079.16 160 CP009044_00113 - 191 0.0085 15.7 1.4 1 1 1.3e-05 0.013 15.2 1.4 23 93 33 103 7 115 0.86 Segregation and condensation complex subunit ScpB V_ATPase_I PF01496.19 813 CP009044_00113 - 191 0.022 12.7 3.4 1 1 2.5e-05 0.025 12.5 3.4 44 147 31 137 20 180 0.53 V-type ATPase 116kDa subunit family HrpB7 PF09486.10 157 CP009044_00113 - 191 0.03 14.7 0.6 1 1 4.5e-05 0.045 14.1 0.6 65 142 16 91 5 98 0.89 Bacterial type III secretion protein (HrpB7) Cob_adeno_trans PF01923.18 164 CP009044_00113 - 191 0.041 14.0 1.6 1 1 6.8e-05 0.067 13.3 1.6 22 73 41 95 23 146 0.62 Cobalamin adenosyltransferase Spectrin PF00435.21 105 CP009044_00113 - 191 0.046 14.2 2.7 1 1 0.00011 0.11 13.0 2.7 6 68 29 90 25 97 0.86 Spectrin repeat M PF02370.16 21 CP009044_00113 - 191 0.072 13.7 6.6 1 1 0.00031 0.31 11.7 6.6 1 20 63 82 63 83 0.92 M protein repeat DUF1319 PF07028.11 109 CP009044_00113 - 191 0.11 12.7 3.3 1 1 0.00023 0.23 11.7 3.3 36 96 55 114 18 123 0.73 Protein of unknown function (DUF1319) TolA_bind_tri PF16331.5 76 CP009044_00113 - 191 0.16 12.0 2.2 1 2 0.00053 0.53 10.4 1.7 21 72 31 82 21 88 0.86 TolA binding protein trimerisation TolA_bind_tri PF16331.5 76 CP009044_00113 - 191 0.16 12.0 2.2 2 2 0.14 1.3e+02 2.7 0.4 21 38 73 90 65 97 0.64 TolA binding protein trimerisation DUF272 PF03312.15 124 CP009044_00113 - 191 0.2 11.9 3.6 1 2 0.0016 1.6 9.0 0.6 49 98 62 111 9 125 0.77 Protein of unknown function (DUF272) DUF272 PF03312.15 124 CP009044_00113 - 191 0.2 11.9 3.6 2 2 0.063 62 3.8 0.1 71 101 131 166 123 187 0.65 Protein of unknown function (DUF272) FlaC_arch PF05377.11 55 CP009044_00113 - 191 0.24 11.8 4.0 1 2 0.11 1.1e+02 3.3 0.1 24 45 31 52 21 63 0.84 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 CP009044_00113 - 191 0.24 11.8 4.0 2 2 0.002 2 8.9 1.0 3 28 66 91 64 98 0.89 Flagella accessory protein C (FlaC) NPV_P10 PF05531.12 75 CP009044_00113 - 191 0.27 11.7 2.6 1 1 0.00055 0.55 10.7 1.7 12 50 57 95 53 101 0.74 Nucleopolyhedrovirus P10 protein GIT_CC PF16559.5 66 CP009044_00113 - 191 0.67 9.9 6.4 1 2 0.46 4.6e+02 0.8 0.1 42 56 33 47 21 58 0.84 GIT coiled-coil Rho guanine nucleotide exchange factor GIT_CC PF16559.5 66 CP009044_00113 - 191 0.67 9.9 6.4 2 2 0.00083 0.83 9.6 3.3 34 65 60 91 53 92 0.88 GIT coiled-coil Rho guanine nucleotide exchange factor YabA PF06156.13 102 CP009044_00113 - 191 1.6 9.4 7.4 1 1 0.0027 2.7 8.7 7.4 5 65 32 91 29 153 0.85 Initiation control protein YabA Swi5 PF07061.11 80 CP009044_00113 - 191 5.2 7.2 8.9 1 3 0.24 2.4e+02 1.9 0.1 8 38 33 63 30 64 0.84 Swi5 Swi5 PF07061.11 80 CP009044_00113 - 191 5.2 7.2 8.9 2 3 0.0013 1.3 9.1 3.1 2 37 62 97 61 98 0.90 Swi5 Swi5 PF07061.11 80 CP009044_00113 - 191 5.2 7.2 8.9 3 3 4.4 4.4e+03 -2.2 0.0 29 41 136 147 112 157 0.53 Swi5 Peptidase_C39 PF03412.15 133 CP010073_00002 - 197 9e-18 64.4 0.0 1 1 1.9e-21 1.2e-17 64.0 0.0 2 124 33 162 32 176 0.81 Peptidase C39 family Peptidase_C70 PF12385.8 145 CP010073_00002 - 197 0.00011 22.2 0.0 1 1 2.6e-08 0.00016 21.7 0.0 11 131 37 147 20 158 0.78 Papain-like cysteine protease AvrRpt2 Peptidase_C39_2 PF13529.6 144 CP010073_00002 - 197 0.085 13.4 0.0 1 1 2.9e-05 0.18 12.4 0.0 6 143 36 143 31 144 0.67 Peptidase_C39 like family Relaxase PF03432.14 242 CP010073_00004 - 462 1.6e-09 37.8 6.2 1 2 8.9e-14 1.6e-09 37.8 6.2 48 229 119 297 70 310 0.70 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP010073_00004 - 462 1.6e-09 37.8 6.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 CP010073_00005 - 183 0.00011 22.1 5.7 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP010073_00005 - 183 0.00011 22.1 5.7 2 3 0.49 1.8e+03 -0.9 0.0 21 36 77 92 71 97 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP010073_00005 - 183 0.00011 22.1 5.7 3 3 1.9e-05 0.067 13.2 0.7 15 62 107 156 95 161 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP010073_00005 - 183 0.049 13.8 1.8 1 1 1.9e-05 0.069 13.3 1.4 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP010073_00005 - 183 0.28 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP010073_00005 - 183 0.28 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP010073_00005 - 183 0.28 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 CP010073_00005 - 183 0.3 11.4 5.9 1 2 0.0004 1.4 9.2 2.0 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP010073_00005 - 183 0.3 11.4 5.9 2 2 0.015 55 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 CP010073_00005 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP010073_00005 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 CP010073_00006 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP010073_00006 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 CP010073_00006 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 CP010073_00006 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 CP010073_00006 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 CP010073_00008 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 CP010073_00008 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 CP010073_00009 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 CP010073_00009 - 408 0.087 12.8 0.3 1 1 8.5e-05 0.38 10.7 0.3 52 81 138 167 114 170 0.79 PAZ domain Toprim_4 PF13662.6 89 CP010073_00009 - 408 0.11 13.0 0.1 1 1 5.4e-05 0.24 11.9 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 CP010073_00009 - 408 0.2 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP010073_00009 - 408 0.2 12.3 4.2 2 2 0.00032 1.4 9.5 0.2 15 80 321 382 320 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 CP010073_00010 - 92 0.0074 16.2 0.0 1 1 3e-06 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) CCDC50_N PF15295.6 126 CP010073_00010 - 92 0.011 15.9 2.0 1 1 2.9e-06 0.013 15.6 2.0 57 116 26 91 23 92 0.88 Coiled-coil domain-containing protein 50 N-terminus BAR_3 PF16746.5 238 CP010073_00010 - 92 0.021 14.6 1.6 1 1 5.1e-06 0.023 14.4 1.6 22 78 35 91 26 92 0.93 BAR domain of APPL family Uteroglobin PF01099.17 90 CP010073_00010 - 92 2.4 8.6 5.7 1 2 0.0027 12 6.3 0.7 44 68 26 50 5 63 0.83 Uteroglobin family Uteroglobin PF01099.17 90 CP010073_00010 - 92 2.4 8.6 5.7 2 2 0.006 27 5.2 0.6 38 64 64 91 55 92 0.79 Uteroglobin family Sdh_cyt PF01127.22 121 CP010073_00011 - 98 0.00091 19.3 0.8 1 1 2.4e-07 0.0011 19.0 0.8 34 88 27 83 25 95 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 CP010073_00011 - 98 0.13 12.6 3.1 1 1 3.7e-05 0.17 12.2 3.1 6 55 19 81 16 97 0.63 2TM domain DUF2207 PF09972.9 492 CP010073_00011 - 98 0.58 8.9 2.2 1 1 0.00013 0.6 8.8 2.2 384 439 30 87 6 95 0.60 Predicted membrane protein (DUF2207) DUF2633 PF11119.8 57 CP010073_00011 - 98 0.58 10.1 3.8 1 2 1.1 5.1e+03 -2.5 0.0 8 14 7 13 5 17 0.78 Protein of unknown function (DUF2633) DUF2633 PF11119.8 57 CP010073_00011 - 98 0.58 10.1 3.8 2 2 0.00051 2.3 8.2 4.2 11 33 34 57 27 60 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 CP010073_00013 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 CP010073_00014 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 CP010073_00015 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 CP010073_00015 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP010073_00015 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP010073_00015 - 597 0.0022 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP010073_00015 - 597 0.0022 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 CP010073_00015 - 597 0.0088 15.4 0.0 1 2 2.3e-05 0.058 12.7 0.0 16 70 30 83 23 120 0.90 KaiC ATPase PF06745.13 231 CP010073_00015 - 597 0.0088 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 CP010073_00015 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP010073_00015 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 CP010073_00015 - 597 0.21 11.6 2.3 1 1 0.00045 1.2 9.3 2.3 1 29 35 63 35 536 0.89 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 CP010073_00015 - 597 0.37 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP010073_00015 - 597 0.37 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP010073_00015 - 597 0.37 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 CP010073_00016 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP010073_00016 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 CP010073_00016 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 CP010073_00016 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP010073_00016 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP010073_00016 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP010073_00016 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain CRISPR_Cas2 PF09827.9 76 CP010073_00017 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP010073_00017 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 TrbC PF04956.13 99 CP010073_00019 - 87 1.5e-14 54.0 8.5 1 1 1.7e-18 1.6e-14 53.9 8.5 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP010073_00019 - 87 0.056 13.3 4.3 1 1 8.2e-06 0.073 12.9 4.2 76 135 35 87 12 87 0.71 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 CP010073_00020 - 922 3.6e-49 167.7 0.3 1 1 2e-52 9e-49 166.4 0.3 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP010073_00020 - 922 7e-21 74.3 1.2 1 1 2.8e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 CP010073_00020 - 922 3.8e-07 29.4 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 CP010073_00020 - 922 0.024 14.7 4.5 1 5 0.52 2.3e+03 -1.6 0.1 117 202 161 253 129 284 0.48 Helicase HerA, central domain DUF87 PF01935.17 227 CP010073_00020 - 922 0.024 14.7 4.5 2 5 0.89 4e+03 -2.3 0.0 87 124 263 298 243 301 0.77 Helicase HerA, central domain DUF87 PF01935.17 227 CP010073_00020 - 922 0.024 14.7 4.5 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 CP010073_00020 - 922 0.024 14.7 4.5 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 CP010073_00020 - 922 0.024 14.7 4.5 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain Phage_pRha PF09669.10 88 CP010073_00021 - 185 6.9e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 CP010073_00021 - 185 0.0016 18.5 0.0 1 1 9.1e-07 0.0033 17.5 0.0 23 90 27 94 23 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 CP010073_00021 - 185 0.031 13.9 0.1 1 2 0.063 2.3e+02 1.3 0.0 80 118 33 71 5 80 0.78 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 CP010073_00021 - 185 0.031 13.9 0.1 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 CP010073_00021 - 185 0.09 12.8 0.0 1 1 5.5e-05 0.2 11.7 0.0 77 131 80 130 62 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 CP010073_00021 - 185 0.56 10.3 5.4 1 3 0.048 1.7e+02 2.3 0.0 42 53 14 25 3 28 0.78 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CP010073_00021 - 185 0.56 10.3 5.4 2 3 0.0021 7.7 6.6 0.8 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CP010073_00021 - 185 0.56 10.3 5.4 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 Phage_pRha PF09669.10 88 CP010073_00022 - 183 4.3e-24 84.9 0.3 1 1 3.8e-28 6.9e-24 84.2 0.3 2 88 24 117 23 117 0.78 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 CP010073_00023 - 221 0.075 12.7 0.1 1 1 5.2e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 CP010073_00023 - 221 0.15 10.6 14.4 1 2 2.5e-06 0.009 14.7 7.8 332 412 3 86 1 147 0.85 Flagellar Assembly Protein A FapA PF03961.13 454 CP010073_00023 - 221 0.15 10.6 14.4 2 2 0.09 3.2e+02 -0.3 1.2 298 360 145 212 127 221 0.43 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 CP010073_00023 - 221 0.95 9.6 11.6 1 3 1.7e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP010073_00023 - 221 0.95 9.6 11.6 2 3 0.31 1.1e+03 -0.3 0.0 110 126 136 152 113 165 0.63 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP010073_00023 - 221 0.95 9.6 11.6 3 3 0.33 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 CP010073_00023 - 221 1.7 8.6 14.4 1 3 1.4e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP010073_00023 - 221 1.7 8.6 14.4 2 3 0.23 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP010073_00023 - 221 1.7 8.6 14.4 3 3 0.073 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF465 PF04325.13 47 CP010073_00023 - 221 4.6 7.4 9.4 1 3 0.0035 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP010073_00023 - 221 4.6 7.4 9.4 2 3 0.82 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP010073_00023 - 221 4.6 7.4 9.4 3 3 0.0077 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 CP010073_00024 - 141 1.7e-25 89.0 0.1 1 1 1.2e-29 2.2e-25 88.7 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 CP010073_00025 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP010073_00025 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP010073_00025 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP010073_00025 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP010073_00025 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP010073_00025 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP010073_00025 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 CP010073_00026 - 328 5.7e-28 98.7 13.6 1 1 2.6e-31 7.8e-28 98.2 13.6 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 CP010073_00026 - 328 0.0056 16.8 1.3 1 3 0.88 2.6e+03 -1.4 0.0 30 53 134 157 122 164 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP010073_00026 - 328 0.0056 16.8 1.3 2 3 8e-06 0.024 14.8 0.1 18 82 195 259 188 263 0.92 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP010073_00026 - 328 0.0056 16.8 1.3 3 3 1.2 3.7e+03 -1.9 0.0 62 79 302 319 292 327 0.75 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CP010073_00026 - 328 0.0092 16.7 6.0 1 3 0.066 2e+02 2.6 0.4 93 135 105 145 41 146 0.60 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP010073_00026 - 328 0.0092 16.7 6.0 2 3 0.069 2.1e+02 2.6 0.4 52 135 111 145 79 186 0.62 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP010073_00026 - 328 0.0092 16.7 6.0 3 3 3.1e-06 0.0092 16.7 6.0 49 125 225 315 205 322 0.78 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 CP010073_00026 - 328 0.1 13.3 3.5 1 2 1.7 5.1e+03 -1.9 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP010073_00026 - 328 0.1 13.3 3.5 2 2 2.6e-05 0.077 13.7 1.0 32 84 209 270 203 295 0.83 von Willebrand factor type A domain Phage_holin_6_1 PF09682.10 101 CP010073_00026 - 328 0.13 12.7 8.7 1 2 9.1e-05 0.27 11.7 0.3 4 62 77 136 75 154 0.81 Bacteriophage holin of superfamily 6 (Holin_LLH) Phage_holin_6_1 PF09682.10 101 CP010073_00026 - 328 0.13 12.7 8.7 2 2 0.017 51 4.4 2.4 36 90 268 323 251 327 0.83 Bacteriophage holin of superfamily 6 (Holin_LLH) DUF3752 PF12572.8 152 CP010073_00026 - 328 3.1 8.3 8.6 1 2 0.0033 9.9 6.7 0.4 21 49 106 136 98 153 0.70 Protein of unknown function (DUF3752) DUF3752 PF12572.8 152 CP010073_00026 - 328 3.1 8.3 8.6 2 2 0.01 31 5.1 2.6 33 106 233 320 218 328 0.76 Protein of unknown function (DUF3752) TrbL PF04610.14 215 CP010073_00027 - 330 2.3e-30 106.0 31.8 1 2 3.8e-34 2.3e-30 106.0 31.8 1 214 38 250 38 251 0.92 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP010073_00027 - 330 2.3e-30 106.0 31.8 2 2 0.16 9.3e+02 -0.6 0.1 55 91 281 327 255 330 0.61 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP010073_00027 - 330 0.17 11.7 1.7 1 2 0.16 9.4e+02 -0.3 0.1 35 66 65 102 58 115 0.54 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP010073_00027 - 330 0.17 11.7 1.7 2 2 9.1e-05 0.55 10.1 0.1 29 81 232 286 201 298 0.75 T-cell leukemia translocation-altered AIM3 PF17096.5 88 CP010073_00027 - 330 1.7 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 297 327 290 329 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 CP010073_00028 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CP010073_00028 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 CP010073_00029 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CP010073_00029 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 CP010073_00030 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CP010073_00030 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CP010073_00030 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 CP010073_00031 - 390 3.1e-48 164.1 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 193 374 193 374 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP010073_00031 - 390 0.028 13.5 0.1 1 1 4.8e-06 0.043 12.9 0.1 31 81 321 371 304 376 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 CP010073_00032 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP010073_00032 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP010073_00032 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP010073_00032 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP010073_00032 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CP010073_00032 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CP010073_00032 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CP010073_00032 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP010073_00032 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CP010073_00032 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP010073_00032 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP010073_00032 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CP010073_00032 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CP010073_00032 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CP010073_00032 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP010073_00032 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CP010073_00032 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CP010073_00032 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CP010073_00032 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CP010073_00032 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CP010073_00032 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP010073_00032 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CP010073_00032 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP010073_00032 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP010073_00032 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CP010073_00032 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CP010073_00032 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 CP010073_00032 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP010073_00032 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP010073_00032 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CP010073_00032 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 CP010073_00032 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 CP010073_00033 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP010073_00033 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP010073_00033 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP010073_00033 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CP010073_00033 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 CP010073_00034 - 145 5.5e-17 62.1 0.4 1 1 1.2e-20 6.9e-17 61.8 0.4 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 CP010073_00034 - 145 0.068 13.0 0.2 1 1 3.3e-05 0.19 11.5 0.2 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CP010073_00034 - 145 3.9 7.4 6.0 1 2 0.00075 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CP010073_00034 - 145 3.9 7.4 6.0 2 2 0.16 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 CP010073_00035 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 CP010073_00036 - 265 0.038 13.8 0.4 1 2 0.9 5.4e+03 -2.9 0.1 129 153 22 46 15 49 0.68 PRELI-like family PRELI PF04707.14 157 CP010073_00036 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 CP010073_00036 - 265 0.077 11.7 0.0 1 1 1.8e-05 0.1 11.2 0.0 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 CP010073_00036 - 265 0.74 9.8 5.2 1 3 0.4 2.4e+03 -1.6 0.1 113 134 21 42 5 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP010073_00036 - 265 0.74 9.8 5.2 2 3 7.4e-05 0.44 10.5 1.9 42 108 120 185 89 189 0.81 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP010073_00036 - 265 0.74 9.8 5.2 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 CP010073_00038 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP010073_00038 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 CP010073_00039 - 730 1.2e-96 324.2 8.2 1 1 1.5e-99 1.7e-96 323.8 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP010073_00039 - 730 1.8e-12 47.4 0.4 1 2 9.2e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP010073_00039 - 730 1.8e-12 47.4 0.4 2 2 3.9 4.4e+03 -2.0 0.0 38 56 537 556 489 567 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 CP010073_00039 - 730 1.7e-08 34.1 15.1 1 2 3.7e-09 4.1e-06 26.5 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP010073_00039 - 730 1.7e-08 34.1 15.1 2 2 8.7e-05 0.098 12.5 2.4 3 27 683 710 681 719 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP010073_00039 - 730 1e-05 25.7 2.3 1 3 8.3 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP010073_00039 - 730 1e-05 25.7 2.3 2 3 0.00037 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP010073_00039 - 730 1e-05 25.7 2.3 3 3 3.8e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CP010073_00039 - 730 0.012 15.7 1.3 1 2 0.0077 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP010073_00039 - 730 0.012 15.7 1.3 2 2 0.0045 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CP010073_00039 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP010073_00039 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 CP010073_00039 - 730 0.056 14.3 2.8 1 2 0.007 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP010073_00039 - 730 0.056 14.3 2.8 2 2 0.021 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CP010073_00039 - 730 0.087 12.3 2.7 1 2 0.003 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP010073_00039 - 730 0.087 12.3 2.7 2 2 0.02 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 CP010073_00039 - 730 0.088 13.1 4.5 1 2 0.00079 0.88 9.9 3.7 5 64 627 689 623 696 0.71 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP010073_00039 - 730 0.088 13.1 4.5 2 2 0.0023 2.6 8.4 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain EF-hand_8 PF13833.6 55 CP010073_00039 - 730 0.088 12.7 0.0 1 1 0.00027 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 CP010073_00039 - 730 0.46 10.7 3.3 1 3 1.7 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP010073_00039 - 730 0.46 10.7 3.3 2 3 5 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP010073_00039 - 730 0.46 10.7 3.3 3 3 0.00076 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 CP010073_00039 - 730 0.55 9.9 3.0 1 2 0.03 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 CP010073_00039 - 730 0.55 9.9 3.0 2 2 0.011 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 CP010073_00039 - 730 0.64 10.0 3.8 1 2 0.0041 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP010073_00039 - 730 0.64 10.0 3.8 2 2 0.13 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 CP010073_00039 - 730 0.75 9.9 3.8 1 2 0.1 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 CP010073_00039 - 730 0.75 9.9 3.8 2 2 0.0039 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 CP010073_00039 - 730 6.9 6.5 8.0 1 2 0.046 51 3.7 2.5 15 31 629 645 627 660 0.79 PADR1 (NUC008) domain PADR1 PF08063.12 53 CP010073_00039 - 730 6.9 6.5 8.0 2 2 0.016 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 CP010073_00039 - 730 8.4 6.4 6.5 1 2 0.01 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 CP010073_00039 - 730 8.4 6.4 6.5 2 2 0.088 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 CP010073_00040 - 351 2.7e-05 24.1 2.2 1 1 8.4e-09 7.5e-05 22.6 2.2 4 133 209 334 206 344 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP010073_00040 - 351 0.016 15.2 4.6 1 1 1.5e-05 0.14 12.1 4.6 37 125 189 322 89 330 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 CP010073_00042 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP010073_00042 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP010073_00042 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP010073_00042 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP010073_00042 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP010073_00042 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP010073_00042 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP010073_00042 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP010073_00042 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP010073_00042 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family AAA_18 PF13238.6 130 CP010073_00043 - 152 1.5e-06 28.8 0.0 1 1 4.5e-10 2e-06 28.4 0.0 44 122 15 104 2 112 0.79 AAA domain CPT PF07931.12 174 CP010073_00043 - 152 3.5e-06 27.0 0.0 1 1 9.4e-10 4.2e-06 26.7 0.0 59 172 26 143 5 145 0.80 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 CP010073_00043 - 152 0.0018 18.5 0.0 1 1 5.7e-07 0.0026 17.9 0.0 55 135 35 114 4 117 0.78 AAA domain MKT1_N PF12247.8 90 CP010073_00043 - 152 0.088 13.2 0.0 1 1 3.7e-05 0.17 12.3 0.0 14 51 10 45 7 135 0.89 Temperature dependent protein affecting M2 dsRNA replication APH PF01636.23 240 CP010073_00044 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 CP010073_00044 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 CP010073_00044 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 CP010073_00044 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 CP010073_00044 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 CP010073_00044 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 CP010073_00045 - 138 1.6e-24 87.2 0.0 1 1 1.2e-28 2.1e-24 86.8 0.0 1 74 1 73 1 81 0.97 Pyroglutamyl peptidase Lip_prot_lig_C PF10437.9 85 CP010073_00046 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 CP010073_00046 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 CP010073_00046 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP010073_00046 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 CP010073_00047 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CP010073_00047 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 CP010073_00048 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 CP010073_00048 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP010073_00048 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 CP010073_00048 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 CP010073_00048 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 CP010073_00048 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 CP010073_00048 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP010073_00048 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP010073_00048 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 CP010073_00049 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP010073_00049 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP010073_00049 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP010073_00049 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP010073_00049 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP010073_00049 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 CP010073_00050 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP010073_00050 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 CP010073_00051 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP010073_00051 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP010073_00051 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP010073_00051 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP010073_00051 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP010073_00051 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 CP010073_00052 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 CP010073_00053 - 1932 2e-16 59.6 0.8 1 3 1.7e-19 6e-16 58.1 0.1 57 245 1018 1273 936 1314 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP010073_00053 - 1932 2e-16 59.6 0.8 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP010073_00053 - 1932 2e-16 59.6 0.8 3 3 1.1 3.9e+03 -3.8 0.0 172 199 1879 1907 1860 1915 0.75 SNF2 family N-terminal domain ResIII PF04851.15 171 CP010073_00053 - 1932 5.5e-08 33.0 8.4 1 2 1.5e-11 5.5e-08 33.0 8.4 2 148 1000 1212 999 1243 0.71 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP010073_00053 - 1932 5.5e-08 33.0 8.4 2 2 0.38 1.4e+03 -0.8 5.3 36 121 1801 1904 1749 1929 0.62 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP010073_00053 - 1932 9.1e-07 29.2 0.2 1 2 0.16 5.7e+02 0.9 0.0 45 73 1077 1105 1029 1108 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP010073_00053 - 1932 9.1e-07 29.2 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP010073_00053 - 1932 1.1e-05 25.3 1.8 1 2 3.3e-07 0.0012 18.7 0.3 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 CP010073_00053 - 1932 1.1e-05 25.3 1.8 2 2 0.15 5.4e+02 0.2 0.1 120 143 1884 1909 1831 1929 0.67 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP010073_00053 - 1932 3.8e-05 24.1 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP010073_00053 - 1932 3.8e-05 24.1 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 664 701 655 716 0.65 Eco57I restriction-modification methylase HTH_3 PF01381.22 55 CP010073_00054 - 314 4.7e-06 26.6 0.0 1 2 3.1e-07 0.00046 20.2 0.0 2 29 3 30 2 30 0.90 Helix-turn-helix HTH_3 PF01381.22 55 CP010073_00054 - 314 4.7e-06 26.6 0.0 2 2 0.032 48 4.1 0.0 26 55 118 147 92 147 0.84 Helix-turn-helix HTH_19 PF12844.7 65 CP010073_00054 - 314 1.1e-05 25.3 0.2 1 2 0.0044 6.6 6.8 0.0 11 32 9 30 1 46 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 CP010073_00054 - 314 1.1e-05 25.3 0.2 2 2 7.6e-06 0.011 15.7 0.0 27 64 116 152 89 153 0.88 Helix-turn-helix domain Phage_CI_repr PF07022.13 65 CP010073_00054 - 314 0.00047 20.2 0.0 1 2 5.4e-05 0.081 13.0 0.0 11 49 10 47 2 51 0.77 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 CP010073_00054 - 314 0.00047 20.2 0.0 2 2 0.025 37 4.5 0.0 41 64 131 154 124 155 0.83 Bacteriophage CI repressor helix-turn-helix domain HTH_23 PF13384.6 50 CP010073_00054 - 314 0.0075 16.0 0.0 1 2 3e-05 0.045 13.6 0.0 16 37 7 30 1 36 0.86 Homeodomain-like domain HTH_23 PF13384.6 50 CP010073_00054 - 314 0.0075 16.0 0.0 2 2 0.89 1.3e+03 -0.7 0.0 35 49 54 67 52 67 0.85 Homeodomain-like domain HTH_24 PF13412.6 48 CP010073_00054 - 314 0.0076 15.8 0.0 1 2 7e-05 0.11 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP010073_00054 - 314 0.0076 15.8 0.0 2 2 0.25 3.7e+02 0.8 0.0 26 39 98 111 94 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 CP010073_00054 - 314 0.012 15.7 0.0 1 2 2.4e-05 0.037 14.2 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain HTH_28 PF13518.6 52 CP010073_00054 - 314 0.012 15.7 0.0 2 2 8.8 1.3e+04 -3.6 0.0 34 44 58 67 55 68 0.76 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 CP010073_00054 - 314 0.022 14.6 0.1 1 2 4.1e-05 0.062 13.2 0.0 4 36 5 37 2 54 0.77 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 CP010073_00054 - 314 0.022 14.6 0.1 2 2 4.2 6.2e+03 -2.8 0.1 38 47 290 299 289 300 0.85 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_26 PF13443.6 63 CP010073_00054 - 314 0.045 14.2 0.0 1 2 0.00011 0.16 12.4 0.0 3 30 3 30 1 38 0.88 Cro/C1-type HTH DNA-binding domain HTH_26 PF13443.6 63 CP010073_00054 - 314 0.045 14.2 0.0 2 2 4.9 7.2e+03 -2.5 0.0 25 52 116 142 111 148 0.76 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.7 51 CP010073_00054 - 314 0.1 12.8 0.0 1 2 0.11 1.7e+02 2.5 0.0 5 16 3 14 2 16 0.90 Helix-turn-helix domain HTH_17 PF12728.7 51 CP010073_00054 - 314 0.1 12.8 0.0 2 2 0.00093 1.4 9.2 0.0 5 27 14 36 11 42 0.83 Helix-turn-helix domain HTH_31 PF13560.6 64 CP010073_00054 - 314 0.11 12.8 0.0 1 1 0.00013 0.2 12.0 0.0 12 33 8 29 2 40 0.88 Helix-turn-helix domain Phage_AlpA PF05930.12 51 CP010073_00054 - 314 0.15 11.9 0.0 1 2 0.013 20 5.1 0.0 6 19 2 15 1 18 0.89 Prophage CP4-57 regulatory protein (AlpA) Phage_AlpA PF05930.12 51 CP010073_00054 - 314 0.15 11.9 0.0 2 2 0.0027 4 7.3 0.0 5 23 12 30 11 35 0.88 Prophage CP4-57 regulatory protein (AlpA) Sigma70_r4_2 PF08281.12 54 CP010073_00054 - 314 0.16 11.7 0.0 1 1 0.00023 0.35 10.6 0.0 25 46 9 30 5 30 0.93 Sigma-70, region 4 PcfJ PF14284.6 144 CP011017_00002 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP011017_00002 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain Topoisom_bac PF01131.20 413 CP011017_00003 - 730 1.7e-97 327.1 8.2 1 1 2.2e-100 2.3e-97 326.6 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP011017_00003 - 730 4.7e-12 46.0 2.7 1 2 6.1e-15 6.4e-12 45.6 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP011017_00003 - 730 4.7e-12 46.0 2.7 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 CP011017_00003 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP011017_00003 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP011017_00003 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP011017_00003 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP011017_00003 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CP011017_00003 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP011017_00003 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CP011017_00003 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP011017_00003 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 CP011017_00003 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 CP011017_00003 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 CP011017_00003 - 730 0.055 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP011017_00003 - 730 0.055 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CP011017_00003 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP011017_00003 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 CP011017_00003 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 CP011017_00003 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP011017_00003 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 CP011017_00003 - 730 0.42 10.8 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP011017_00003 - 730 0.42 10.8 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP011017_00003 - 730 0.42 10.8 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 CP011017_00003 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 CP011017_00003 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 CP011017_00003 - 730 0.63 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP011017_00003 - 730 0.63 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 CP011017_00003 - 730 0.73 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 CP011017_00003 - 730 0.73 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 CP011017_00003 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 CP011017_00003 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 CP011017_00003 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 CP011017_00003 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 CP011017_00004 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP011017_00004 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 CP011017_00006 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 CP011017_00006 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 CP011017_00006 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 CP011017_00006 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP011017_00006 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP011017_00006 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 CP011017_00007 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 CP011017_00008 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 CP011017_00008 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 CP011017_00008 - 145 0.08 12.7 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CP011017_00008 - 145 3.9 7.4 5.6 1 2 0.00081 3.6 7.5 2.3 36 49 29 42 2 47 0.91 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CP011017_00008 - 145 3.9 7.4 5.6 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 CP011017_00009 - 603 7e-106 354.8 0.1 1 1 1.6e-109 9.7e-106 354.3 0.1 3 461 94 565 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP011017_00009 - 603 9.6e-25 87.0 0.0 1 1 3.5e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP011017_00009 - 603 7.2e-16 58.1 0.0 1 2 1.2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP011017_00009 - 603 7.2e-16 58.1 0.0 2 2 2.2e-14 1.3e-10 40.8 0.0 187 370 347 532 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain T2SSE PF00437.20 273 CP011017_00010 - 335 1.5e-54 184.9 0.0 1 1 3.1e-57 1.7e-54 184.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP011017_00010 - 335 7e-05 23.4 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP011017_00010 - 335 0.00011 21.6 0.0 1 1 3.1e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP011017_00010 - 335 0.00029 20.4 0.0 1 1 9.1e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP011017_00010 - 335 0.0014 18.9 0.0 1 1 4.6e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 CP011017_00010 - 335 0.0014 18.4 0.0 1 1 4e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 CP011017_00010 - 335 0.0025 17.6 0.0 1 1 9.5e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 CP011017_00010 - 335 0.0035 17.3 0.0 1 1 1.3e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP011017_00010 - 335 0.0055 15.7 0.0 1 1 1.4e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 CP011017_00010 - 335 0.0073 16.2 0.0 1 1 2.2e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP011017_00010 - 335 0.0087 15.4 0.0 1 1 2.5e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP011017_00010 - 335 0.0092 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 CP011017_00010 - 335 0.019 15.1 0.0 1 1 6.3e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 CP011017_00010 - 335 0.021 13.8 0.0 1 1 6.1e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 CP011017_00010 - 335 0.022 14.8 0.1 1 1 9.7e-05 0.054 13.5 0.0 5 50 147 186 135 244 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 CP011017_00010 - 335 0.024 14.4 0.0 1 1 9e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 CP011017_00010 - 335 0.026 14.2 0.0 1 1 9.6e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 CP011017_00010 - 335 0.037 13.5 0.0 1 1 0.00011 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 CP011017_00010 - 335 0.039 14.0 0.1 1 1 0.00019 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 CP011017_00010 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP011017_00010 - 335 0.046 13.0 0.0 1 1 0.00014 0.08 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin RNA_helicase PF00910.22 107 CP011017_00010 - 335 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase PRK PF00485.18 197 CP011017_00010 - 335 0.056 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP011017_00010 - 335 0.066 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP011017_00010 - 335 0.074 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 CP011017_00010 - 335 0.088 12.7 0.0 1 1 0.00035 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 CP011017_00010 - 335 0.097 12.6 0.5 1 1 0.00043 0.24 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 CP011017_00010 - 335 0.11 12.4 0.1 1 1 0.00041 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 CP011017_00010 - 335 0.13 12.8 0.1 1 1 0.00069 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 CP011017_00010 - 335 0.15 11.7 0.0 1 1 0.00042 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP011017_00010 - 335 0.15 11.8 0.0 1 1 0.00043 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 CP011017_00010 - 335 0.35 11.3 3.8 1 2 2.6 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 CP011017_00010 - 335 0.35 11.3 3.8 2 2 0.00066 0.37 11.3 1.3 22 37 163 178 160 184 0.87 AAA domain TrbI PF03743.14 187 CP011017_00011 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.4e+03 -3.4 0.3 136 154 140 166 120 172 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 CP011017_00011 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP011017_00011 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease CagX PF03524.15 211 CP011017_00012 - 296 4.2e-56 190.0 1.7 1 1 1.1e-59 6.7e-56 189.3 1.7 2 211 31 271 30 271 0.92 Conjugal transfer protein TraE PF05309.11 182 CP011017_00012 - 296 0.022 14.2 0.1 1 1 6.6e-06 0.039 13.3 0.1 107 171 89 154 86 161 0.83 TraE protein Rho_RNA_bind PF07497.12 73 CP011017_00012 - 296 0.068 13.0 0.0 1 2 1.5 9.2e+03 -3.4 0.0 9 22 79 92 76 97 0.79 Rho termination factor, RNA-binding domain Rho_RNA_bind PF07497.12 73 CP011017_00012 - 296 0.068 13.0 0.0 2 2 3.3e-05 0.2 11.6 0.0 21 49 241 269 232 288 0.84 Rho termination factor, RNA-binding domain VirB8 PF04335.13 214 CP011017_00013 - 219 1.6e-52 178.5 0.5 1 1 1.9e-56 1.7e-52 178.4 0.5 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 CP011017_00013 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 CP011017_00014 - 54 0.034 13.1 1.0 1 1 5.2e-06 0.031 13.2 1.0 3 25 3 24 1 53 0.80 Treponema clustered lipoprotein (Trep_dent_lipo) La_HTH_kDCL PF18177.1 90 CP011017_00014 - 54 0.19 12.0 0.0 1 1 3.6e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain PsbT PF01405.17 29 CP011017_00014 - 54 1.1 9.1 5.2 1 1 0.00027 1.6 8.6 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 CP011017_00015 - 331 2.1e-30 106.1 33.3 1 2 3.5e-34 2.1e-30 106.1 33.3 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP011017_00015 - 331 2.1e-30 106.1 33.3 2 2 0.75 4.5e+03 -2.8 0.1 84 84 289 289 259 327 0.50 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP011017_00015 - 331 0.065 13.0 0.9 1 2 0.4 2.4e+03 -1.6 0.1 39 51 70 82 61 114 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP011017_00015 - 331 0.065 13.0 0.9 2 2 3.6e-05 0.22 11.4 0.1 37 81 243 287 222 299 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 CP011017_00015 - 331 0.17 11.9 0.0 1 1 5.1e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) T4SS PF07996.11 197 CP011017_00016 - 329 1e-28 101.1 13.2 1 1 4.1e-32 1.5e-28 100.6 13.2 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 CP011017_00016 - 329 0.0033 17.5 0.6 1 2 0.29 1e+03 -0.1 0.0 29 54 133 158 114 172 0.79 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP011017_00016 - 329 0.0033 17.5 0.6 2 2 5.9e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 CP011017_00016 - 329 0.013 16.1 0.8 1 2 0.97 3.5e+03 -1.3 0.0 48 70 110 132 100 162 0.58 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP011017_00016 - 329 0.013 16.1 0.8 2 2 1e-05 0.036 14.7 0.2 31 84 208 270 197 307 0.84 von Willebrand factor type A domain Tissue_fac PF01108.17 107 CP011017_00016 - 329 0.043 13.7 0.0 1 1 2.5e-05 0.089 12.6 0.0 2 64 78 148 77 182 0.71 Tissue factor AATF-Che1 PF13339.6 139 CP011017_00016 - 329 0.45 11.2 11.4 1 2 0.028 99 3.6 0.6 49 135 108 145 42 182 0.62 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP011017_00016 - 329 0.45 11.2 11.4 2 2 0.00011 0.41 11.3 4.5 49 116 225 306 205 328 0.68 Apoptosis antagonizing transcription factor IF2_N PF04760.15 54 CP011017_00017 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP011017_00017 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP011017_00017 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP011017_00017 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP011017_00017 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP011017_00017 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP011017_00017 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 CP011017_00018 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family PBECR2 PF18810.1 119 CP011017_00019 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 Phage_pRha PF09669.10 88 CP011017_00020 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 CP011017_00020 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 CP011017_00020 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) CagE_TrbE_VirB PF03135.14 206 CP011017_00021 - 922 2.4e-51 174.8 0.3 1 1 9.2e-55 5.5e-51 173.6 0.3 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP011017_00021 - 922 6.9e-21 74.3 0.9 1 1 2e-24 1.2e-20 73.5 0.9 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 CP011017_00021 - 922 0.046 13.2 0.1 1 1 1.6e-05 0.097 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated TrbC PF04956.13 99 CP011017_00022 - 87 6.2e-13 48.8 6.8 1 1 7.4e-17 6.6e-13 48.7 6.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP011017_00022 - 87 0.61 9.9 6.3 1 1 0.00015 1.3 8.9 6.2 108 135 60 87 10 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 CP011017_00024 - 135 0.00056 20.0 0.0 1 2 7.8e-08 0.0014 18.8 0.0 4 53 7 71 4 93 0.79 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP011017_00024 - 135 0.00056 20.0 0.0 2 2 0.0096 1.7e+02 2.5 0.0 12 35 55 77 53 106 0.80 CRISPR associated protein Cas2 Resolvase PF00239.21 146 CP011017_00025 - 204 2.5e-34 118.5 0.6 1 1 7.4e-38 3.3e-34 118.1 0.6 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP011017_00025 - 204 0.025 14.3 0.6 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP011017_00025 - 204 0.025 14.3 0.6 2 3 0.0021 9.6 6.1 0.0 2 36 117 152 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 CP011017_00025 - 204 0.025 14.3 0.6 3 3 0.0036 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP011017_00025 - 204 0.05 13.6 4.8 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP011017_00025 - 204 0.05 13.6 4.8 2 3 1.5 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP011017_00025 - 204 0.05 13.6 4.8 3 3 0.024 1.1e+02 3.0 0.1 39 55 159 175 153 177 0.91 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 CP011017_00025 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP011017_00025 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP011017_00025 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat AAA_25 PF13481.6 194 CP011017_00026 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 CP011017_00026 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP011017_00026 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP011017_00026 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP011017_00026 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 CP011017_00026 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 CP011017_00026 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 CP011017_00026 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP011017_00026 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 CP011017_00026 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 CP011017_00026 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP011017_00026 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP011017_00026 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) HicA_toxin PF07927.12 58 CP011017_00027 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 CP011017_00028 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 CP011017_00030 - 90 0.0016 18.5 0.4 1 1 1e-07 0.0018 18.3 0.4 34 88 19 75 17 87 0.85 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF4223 PF13978.6 54 CP011017_00031 - 97 0.0067 16.4 0.0 1 1 1.7e-06 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) nec1 PF10379.9 184 CP011017_00031 - 97 0.1 12.1 0.0 1 1 1.6e-05 0.14 11.6 0.0 65 105 56 94 35 96 0.80 Virulence protein nec1 Toprim_3 PF13362.6 95 CP011017_00032 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 CP011017_00032 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 CP011017_00032 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 CP011017_00032 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP011017_00032 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold ZYG-11_interact PF05884.12 295 CP011017_00034 - 93 0.22 10.9 0.4 1 1 1.4e-05 0.26 10.7 0.4 38 84 5 60 2 74 0.78 Interactor of ZYG-11 HTH_46 PF15977.5 68 CP011017_00035 - 183 0.00021 21.2 5.7 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP011017_00035 - 183 0.00021 21.2 5.7 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP011017_00035 - 183 0.00021 21.2 5.7 3 3 3.4e-05 0.12 12.4 0.6 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP011017_00035 - 183 0.046 13.8 1.9 1 1 1.9e-05 0.067 13.3 1.3 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) DndE PF08870.11 112 CP011017_00035 - 183 0.29 11.4 5.6 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP011017_00035 - 183 0.29 11.4 5.6 2 2 0.00014 0.5 10.7 0.8 1 48 71 118 71 159 0.87 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 CP011017_00035 - 183 0.3 11.4 6.2 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP011017_00035 - 183 0.3 11.4 6.2 2 2 0.013 46 4.4 0.1 45 99 102 154 94 161 0.75 NLRC4 helical domain U3_assoc_6 PF08640.11 83 CP011017_00035 - 183 0.32 11.1 8.7 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP011017_00035 - 183 0.32 11.1 8.7 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP011017_00035 - 183 0.32 11.1 8.7 3 3 0.00029 1 9.4 0.3 8 32 103 127 102 134 0.90 U3 small nucleolar RNA-associated protein 6 Relaxase PF03432.14 242 CP011017_00036 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP011017_00036 - 462 4.7e-10 39.5 7.4 2 2 0.0071 1.3e+02 2.0 5.4 119 183 326 395 318 430 0.69 Relaxase/Mobilisation nuclease domain Acetyltransf_7 PF13508.7 76 CP011017_00037 - 234 0.0002 21.7 0.0 1 1 6.3e-08 0.00038 20.8 0.0 29 75 79 143 36 144 0.68 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 CP011017_00037 - 234 0.0029 17.8 0.0 1 1 1.2e-06 0.0072 16.5 0.0 64 92 81 109 56 142 0.78 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 CP011017_00037 - 234 0.0083 16.2 0.3 1 1 2.6e-06 0.015 15.3 0.3 24 67 171 214 154 218 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 NYN PF01936.18 147 CP011017_00038 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 CP011017_00038 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 CP011017_00038 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 CP011017_00038 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) SNF2_N PF00176.23 350 CP011017_00039 - 1932 3.1e-16 59.1 2.7 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP011017_00039 - 1932 3.1e-16 59.1 2.7 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP011017_00039 - 1932 3.1e-16 59.1 2.7 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1876 1924 1846 1925 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 CP011017_00039 - 1932 4.9e-08 33.2 8.3 1 2 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP011017_00039 - 1932 4.9e-08 33.2 8.3 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1799 1910 1725 1932 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP011017_00039 - 1932 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP011017_00039 - 1932 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP011017_00039 - 1932 9.2e-06 25.5 1.8 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 CP011017_00039 - 1932 9.2e-06 25.5 1.8 2 2 0.12 4.2e+02 0.6 0.0 119 150 1883 1916 1828 1931 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP011017_00039 - 1932 3.7e-05 24.2 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP011017_00039 - 1932 3.7e-05 24.2 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 664 701 655 716 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 CP011017_00040 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 CP011017_00040 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal AAA_31 PF13614.6 177 CP011017_00041 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP011017_00041 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP011017_00041 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP011017_00041 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP011017_00041 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP011017_00041 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 CP011017_00042 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP011017_00042 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 CP011017_00043 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP011017_00043 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP011017_00043 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP011017_00043 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP011017_00043 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP011017_00043 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 CP011017_00044 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 CP011017_00044 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP011017_00044 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 CP011017_00044 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 CP011017_00044 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 CP011017_00044 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 CP011017_00044 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP011017_00044 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP011017_00044 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 CP011017_00045 - 117 0.0057 16.0 1.4 1 3 6.3e-07 0.0057 16.0 1.4 18 43 3 28 1 30 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CP011017_00045 - 117 0.0057 16.0 1.4 2 3 1 9e+03 -3.8 0.3 16 22 52 58 51 61 0.49 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CP011017_00045 - 117 0.0057 16.0 1.4 3 3 0.77 6.9e+03 -3.4 0.9 17 29 76 88 74 92 0.65 Putative Flagellin, Flp1-like, domain vMSA PF00695.19 400 CP011017_00045 - 117 1.9 7.5 5.4 1 1 0.00025 2.3 7.2 5.4 328 398 9 85 1 87 0.72 Major surface antigen from hepadnavirus CtsR_C PF17727.1 72 CP011017_00046 - 102 0.041 14.0 0.3 1 2 0.00017 3 8.0 0.0 3 38 31 66 27 73 0.86 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP011017_00046 - 102 0.041 14.0 0.3 2 2 0.0027 48 4.2 0.0 28 47 74 93 71 100 0.84 CtsR C-terminal dimerization domain W2 PF02020.18 79 CP011017_00047 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 CP011017_00047 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 CP011017_00047 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain DUF5442 PF17514.2 107 CP011017_00049 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 CP011017_00049 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) EFG_C PF00679.24 89 CP011017_00050 - 162 1.3e-17 63.6 0.0 1 1 2e-21 1.8e-17 63.2 0.0 1 83 57 138 57 141 0.97 Elongation factor G C-terminus EFG_IV PF03764.18 121 CP011017_00050 - 162 4.1e-08 33.0 0.0 1 1 6.6e-12 5.9e-08 32.5 0.0 67 120 2 54 1 55 0.95 Elongation factor G, domain IV GTP_EFTU PF00009.27 194 CP013033_00002 - 639 2.5e-59 200.1 0.3 1 1 1.9e-62 3.4e-59 199.6 0.3 2 191 2 237 1 240 0.93 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP013033_00002 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP013033_00002 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP013033_00002 - 639 9.3e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP013033_00002 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP013033_00002 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP013033_00002 - 639 0.00029 21.2 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP013033_00002 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP013033_00002 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP013033_00002 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 CP013033_00002 - 639 0.15 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B LysE PF01810.18 193 CP013033_00003 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 CP013033_00003 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP013033_00003 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 CP013033_00003 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 CP013033_00003 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 CP013033_00003 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 CP013033_00003 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 CP013033_00003 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 CP013033_00003 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP013033_00003 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP013033_00003 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 CP013033_00003 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 CP013033_00004 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP013033_00004 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP013033_00004 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP013033_00004 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP013033_00004 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP013033_00004 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 CP013033_00005 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP013033_00005 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 CP013033_00006 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP013033_00006 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP013033_00006 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP013033_00006 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP013033_00006 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP013033_00006 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 CP013033_00007 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 CP013033_00008 - 1931 2e-16 59.7 0.9 1 3 1.6e-19 5.7e-16 58.2 0.1 57 245 1017 1272 935 1313 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP013033_00008 - 1931 2e-16 59.7 0.9 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP013033_00008 - 1931 2e-16 59.7 0.9 3 3 1.1 3.9e+03 -3.8 0.0 172 199 1878 1906 1859 1914 0.75 SNF2 family N-terminal domain ResIII PF04851.15 171 CP013033_00008 - 1931 6.5e-08 32.8 8.6 1 2 1.8e-11 6.5e-08 32.8 8.6 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP013033_00008 - 1931 6.5e-08 32.8 8.6 2 2 0.38 1.4e+03 -0.8 5.3 36 121 1800 1903 1748 1928 0.62 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP013033_00008 - 1931 2.5e-06 27.8 1.7 1 3 5 1.8e+04 -4.1 0.1 38 61 210 239 197 241 0.56 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP013033_00008 - 1931 2.5e-06 27.8 1.7 2 3 0.16 5.6e+02 0.9 0.0 45 73 1076 1104 1028 1108 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP013033_00008 - 1931 2.5e-06 27.8 1.7 3 3 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP013033_00008 - 1931 1.1e-05 25.2 2.0 1 2 3.1e-07 0.0011 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 CP013033_00008 - 1931 1.1e-05 25.2 2.0 2 2 0.15 5.4e+02 0.2 0.1 120 143 1883 1908 1830 1928 0.67 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP013033_00008 - 1931 2.7e-05 24.6 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP013033_00008 - 1931 2.7e-05 24.6 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase HTH_19 PF12844.7 65 CP013033_00009 - 314 5.9e-05 23.0 0.2 1 2 0.029 44 4.2 0.0 11 31 9 29 2 42 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 CP013033_00009 - 314 5.9e-05 23.0 0.2 2 2 7e-06 0.01 15.8 0.0 27 64 116 152 91 153 0.90 Helix-turn-helix domain HTH_3 PF01381.22 55 CP013033_00009 - 314 0.0013 18.8 0.0 1 2 7e-06 0.01 15.8 0.0 2 29 3 30 2 30 0.85 Helix-turn-helix HTH_3 PF01381.22 55 CP013033_00009 - 314 0.0013 18.8 0.0 2 2 0.57 8.6e+02 0.1 0.0 26 55 118 147 107 147 0.85 Helix-turn-helix Phage_CI_repr PF07022.13 65 CP013033_00009 - 314 0.0024 17.9 0.0 1 2 0.00012 0.18 11.9 0.1 14 49 12 47 8 50 0.82 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 CP013033_00009 - 314 0.0024 17.9 0.0 2 2 0.055 82 3.4 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 CP013033_00009 - 314 0.0046 16.5 0.0 1 2 4.2e-05 0.062 12.9 0.1 17 34 10 27 9 27 0.94 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP013033_00009 - 314 0.0046 16.5 0.0 2 2 0.25 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding Imm3 PF14425.6 119 CP013033_00009 - 314 0.028 14.5 0.2 1 1 3.8e-05 0.057 13.5 0.2 26 113 18 104 1 109 0.73 Immunity protein Imm3 YdaS_antitoxin PF15943.5 65 CP013033_00009 - 314 0.028 14.3 0.1 1 2 7.5e-05 0.11 12.3 0.0 10 36 12 37 2 49 0.79 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 CP013033_00009 - 314 0.028 14.3 0.1 2 2 2.1 3.2e+03 -1.9 0.1 38 47 290 299 289 300 0.87 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_AsnC-type PF13404.6 42 CP013033_00009 - 314 0.041 13.7 0.1 1 2 7.3e-05 0.11 12.3 0.0 17 34 10 27 9 29 0.94 AsnC-type helix-turn-helix domain HTH_AsnC-type PF13404.6 42 CP013033_00009 - 314 0.041 13.7 0.1 2 2 5.4 8e+03 -3.2 0.0 27 36 99 108 98 110 0.81 AsnC-type helix-turn-helix domain Crp PF00325.20 32 CP013033_00009 - 314 0.053 13.2 0.0 1 1 6.4e-05 0.095 12.4 0.0 1 15 9 23 9 27 0.89 Bacterial regulatory proteins, crp family HTH_28 PF13518.6 52 CP013033_00009 - 314 0.054 13.6 0.0 1 1 8.9e-05 0.13 12.4 0.0 13 32 11 30 9 32 0.94 Helix-turn-helix domain HTH_23 PF13384.6 50 CP013033_00009 - 314 0.072 12.9 0.0 1 1 0.00011 0.17 11.7 0.0 17 37 10 30 1 36 0.86 Homeodomain-like domain HTH_Mga PF08280.11 60 CP013033_00009 - 314 0.097 12.7 2.9 1 3 0.0012 1.8 8.7 0.2 20 37 10 27 6 30 0.88 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP013033_00009 - 314 0.097 12.7 2.9 2 3 0.056 83 3.3 0.0 25 59 41 75 32 76 0.80 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP013033_00009 - 314 0.097 12.7 2.9 3 3 7.7 1.2e+04 -3.5 0.0 46 50 94 98 86 105 0.47 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.6 52 CP013033_00009 - 314 0.21 11.0 0.1 1 1 0.00026 0.39 10.2 0.1 26 47 10 30 5 33 0.89 Helix-turn-helix domain of transposase family ISL3 Relaxase PF03432.14 242 CP013033_00010 - 462 5.1e-10 39.4 7.2 1 2 2.9e-14 5.1e-10 39.4 7.2 48 228 119 296 70 309 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP013033_00010 - 462 5.1e-10 39.4 7.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 CP013033_00011 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP013033_00011 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP013033_00011 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP013033_00011 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP013033_00011 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP013033_00011 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP013033_00011 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 CP013033_00011 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP013033_00011 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 CP013033_00011 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP013033_00011 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain Sds3 PF08598.11 218 CP013033_00012 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 CP013033_00012 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP013033_00012 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 CP013033_00012 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 CP013033_00012 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 CP013033_00014 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 CP013033_00014 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 CP013033_00015 - 409 3.6e-08 33.7 0.0 1 1 1.6e-11 7.3e-08 32.7 0.0 3 93 270 374 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 CP013033_00015 - 409 0.083 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain 5_3_exonuc PF01367.20 97 CP013033_00015 - 409 0.083 13.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP013033_00015 - 409 0.083 13.5 4.7 2 2 0.0001 0.46 11.1 0.4 15 81 321 383 319 404 0.72 5'-3' exonuclease, C-terminal SAM fold Toprim_4 PF13662.6 89 CP013033_00015 - 409 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain DUF4223 PF13978.6 54 CP013033_00016 - 87 0.0072 16.3 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 CP013033_00016 - 87 0.0072 16.3 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 CP013033_00016 - 87 0.12 12.4 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain TOPRIM_C PF16898.5 128 CP013033_00017 - 69 0.029 14.7 1.5 1 1 1.7e-06 0.031 14.6 1.5 63 124 8 68 2 69 0.88 C-terminal associated domain of TOPRIM Pkinase PF00069.25 264 CP013033_00018 - 390 2.6e-30 105.7 7.7 1 1 1.2e-33 4.2e-30 105.0 7.7 5 202 156 356 153 390 0.81 Protein kinase domain Pkinase_Tyr PF07714.17 259 CP013033_00018 - 390 1.6e-26 93.2 0.7 1 1 6.2e-30 2.2e-26 92.7 0.7 6 163 157 308 154 380 0.85 Protein tyrosine kinase Pkinase_fungal PF17667.1 408 CP013033_00018 - 390 4.7e-06 25.6 0.7 1 1 2e-09 7e-06 25.1 0.7 314 364 254 301 240 319 0.77 Fungal protein kinase DUF2841 PF11001.8 124 CP013033_00018 - 390 0.0036 17.4 0.7 1 2 2.2 7.8e+03 -3.1 0.0 10 56 22 69 17 74 0.59 Protein of unknown function (DUF2841) DUF2841 PF11001.8 124 CP013033_00018 - 390 0.0036 17.4 0.7 2 2 3.3e-06 0.012 15.7 0.7 15 88 179 263 162 323 0.71 Protein of unknown function (DUF2841) ORC6 PF05460.13 357 CP013033_00018 - 390 0.011 15.0 0.2 1 1 4.6e-06 0.016 14.5 0.2 192 282 163 254 117 268 0.79 Origin recognition complex subunit 6 (ORC6) HicB_lk_antitox PF15919.5 123 CP013033_00020 - 72 3.6e-09 36.8 0.0 1 1 4.2e-13 3.8e-09 36.7 0.0 3 60 5 61 3 71 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 CP013033_00020 - 72 0.065 12.6 0.0 1 1 7.9e-06 0.071 12.5 0.0 12 60 21 69 15 72 0.92 IRSp53/MIM homology domain AAA_25 PF13481.6 194 CP013033_00021 - 597 1.8e-15 57.0 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 CP013033_00021 - 597 0.00087 18.7 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP013033_00021 - 597 0.00087 18.7 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP013033_00021 - 597 0.0012 18.6 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP013033_00021 - 597 0.0012 18.6 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 CP013033_00021 - 597 0.0035 17.1 0.0 1 1 2.5e-06 0.0073 16.0 0.0 5 122 36 172 32 207 0.72 AAA domain ATPase PF06745.13 231 CP013033_00021 - 597 0.011 15.1 0.1 1 2 2.1e-05 0.064 12.6 0.0 16 70 30 83 26 214 0.87 KaiC ATPase PF06745.13 231 CP013033_00021 - 597 0.011 15.1 0.1 2 2 0.51 1.5e+03 -1.7 0.0 137 160 329 352 321 358 0.83 KaiC CbiA PF01656.23 128 CP013033_00021 - 597 0.18 11.9 0.9 1 1 0.00018 0.53 10.4 1.0 1 29 35 63 35 537 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain GBR_NSP5 PF17580.2 176 CP013033_00022 - 115 0.088 12.6 4.3 1 2 0.17 1.5e+03 -1.1 0.0 135 151 11 27 3 51 0.62 Group B Rotavirus Non-structural protein 5 GBR_NSP5 PF17580.2 176 CP013033_00022 - 115 0.088 12.6 4.3 2 2 4.2e-06 0.038 13.8 2.0 17 64 52 99 34 106 0.78 Group B Rotavirus Non-structural protein 5 FeoB_associated PF12669.7 44 CP013033_00022 - 115 0.4 11.1 1.6 1 2 0.00017 1.5 9.3 0.3 2 25 25 48 23 50 0.90 FeoB-associated Cys-rich membrane protein FeoB_associated PF12669.7 44 CP013033_00022 - 115 0.4 11.1 1.6 2 2 0.12 1.1e+03 0.1 0.1 18 26 89 97 88 101 0.86 FeoB-associated Cys-rich membrane protein Resolvase PF00239.21 146 CP013033_00024 - 204 1.6e-33 115.9 0.7 1 1 4.7e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP013033_00024 - 204 0.024 14.4 0.8 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP013033_00024 - 204 0.024 14.4 0.8 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 CP013033_00024 - 204 0.024 14.4 0.8 3 3 0.01 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP013033_00024 - 204 0.028 14.5 4.9 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP013033_00024 - 204 0.028 14.5 4.9 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP013033_00024 - 204 0.028 14.5 4.9 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 CP013033_00024 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP013033_00024 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP013033_00024 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 CP013033_00025 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP013033_00025 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 CP013033_00025 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 CP013033_00027 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP013033_00027 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 CP013033_00028 - 922 2.1e-51 174.9 0.9 1 1 1.2e-54 5.2e-51 173.7 0.9 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP013033_00028 - 922 7.2e-21 74.2 1.2 1 1 2.8e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 CP013033_00028 - 922 3.8e-07 29.3 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 CP013033_00028 - 922 0.038 14.1 5.4 1 5 0.48 2.2e+03 -1.5 0.1 96 202 139 253 127 279 0.53 Helicase HerA, central domain DUF87 PF01935.17 227 CP013033_00028 - 922 0.038 14.1 5.4 2 5 0.37 1.7e+03 -1.1 0.1 88 126 264 300 242 417 0.71 Helicase HerA, central domain DUF87 PF01935.17 227 CP013033_00028 - 922 0.038 14.1 5.4 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 CP013033_00028 - 922 0.038 14.1 5.4 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 CP013033_00028 - 922 0.038 14.1 5.4 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain Phage_pRha PF09669.10 88 CP013033_00029 - 185 6.7e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 CP013033_00029 - 185 0.0015 18.6 0.0 1 1 8.6e-07 0.0031 17.6 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 CP013033_00029 - 185 0.026 14.1 0.3 1 2 0.05 1.8e+02 1.6 0.1 80 118 33 71 5 80 0.74 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 CP013033_00029 - 185 0.026 14.1 0.3 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 CP013033_00029 - 185 0.081 12.9 0.1 1 1 6.1e-05 0.22 11.5 0.0 77 131 80 130 69 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 CP013033_00029 - 185 0.83 9.7 7.1 1 3 0.019 69 3.6 0.1 40 53 12 25 3 29 0.83 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CP013033_00029 - 185 0.83 9.7 7.1 2 3 0.0022 7.9 6.6 0.9 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CP013033_00029 - 185 0.83 9.7 7.1 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 DUF3895 PF13034.6 76 CP013033_00030 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 CP013033_00030 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) SSB PF00436.25 104 CP013033_00031 - 141 7e-25 87.1 0.1 1 1 4.9e-29 8.8e-25 86.8 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 CP013033_00032 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP013033_00032 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP013033_00032 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP013033_00032 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP013033_00032 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP013033_00032 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP013033_00032 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 CP013033_00033 - 323 4.7e-28 98.9 14.1 1 1 2.7e-31 6.1e-28 98.6 14.1 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 CP013033_00033 - 323 0.0059 16.7 0.7 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP013033_00033 - 323 0.0059 16.7 0.7 2 2 9.1e-06 0.02 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CP013033_00033 - 323 0.011 16.4 5.4 1 3 0.067 1.5e+02 3.0 0.3 92 135 104 145 41 149 0.59 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP013033_00033 - 323 0.011 16.4 5.4 2 3 0.12 2.6e+02 2.2 0.5 52 135 111 145 93 185 0.58 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP013033_00033 - 323 0.011 16.4 5.4 3 3 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 CP013033_00033 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 CP013033_00033 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 CP013033_00033 - 323 0.069 13.8 0.9 1 2 2.2 4.9e+03 -1.8 0.0 55 72 124 141 101 172 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP013033_00033 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain Allexi_40kDa PF05549.11 271 CP013033_00033 - 323 0.81 9.1 5.0 1 2 0.21 4.8e+02 0.1 0.1 37 123 47 138 33 177 0.61 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 CP013033_00033 - 323 0.81 9.1 5.0 2 2 0.0002 0.46 10.0 1.6 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein THOC7 PF05615.13 132 CP013033_00033 - 323 3 8.1 11.6 1 2 0.00072 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 CP013033_00033 - 323 3 8.1 11.6 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 DHR10 PF18595.1 117 CP013033_00033 - 323 5.7 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 CP013033_00033 - 323 5.7 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain TrbL PF04610.14 215 CP013033_00034 - 332 2.8e-30 105.7 31.4 1 2 4.7e-34 2.8e-30 105.7 31.4 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP013033_00034 - 332 2.8e-30 105.7 31.4 2 2 0.24 1.4e+03 -1.2 0.1 61 91 293 329 260 332 0.58 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP013033_00034 - 332 0.16 11.8 1.2 1 2 0.16 9.4e+02 -0.3 0.1 35 67 67 105 60 118 0.65 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP013033_00034 - 332 0.16 11.8 1.2 2 2 0.00011 0.68 9.8 0.1 28 81 238 288 209 301 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 CP013033_00034 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 CP013033_00035 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CP013033_00035 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 CP013033_00036 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CP013033_00036 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 CP013033_00037 - 295 2e-54 184.5 1.5 1 1 3.7e-58 3.3e-54 183.8 1.5 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CP013033_00037 - 295 0.072 12.9 0.5 1 2 1.8e-05 0.16 11.8 0.0 1 51 1 51 1 66 0.92 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CP013033_00037 - 295 0.072 12.9 0.5 2 2 1.1 9.7e+03 -3.7 0.1 50 62 130 142 124 149 0.68 Domain of unknown function (DUF4354) TrbI PF03743.14 187 CP013033_00038 - 391 3.3e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP013033_00038 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 CP013033_00039 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP013033_00039 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP013033_00039 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP013033_00039 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP013033_00039 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CP013033_00039 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CP013033_00039 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CP013033_00039 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP013033_00039 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CP013033_00039 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP013033_00039 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP013033_00039 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CP013033_00039 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CP013033_00039 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CP013033_00039 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP013033_00039 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CP013033_00039 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CP013033_00039 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CP013033_00039 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CP013033_00039 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CP013033_00039 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP013033_00039 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CP013033_00039 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP013033_00039 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP013033_00039 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CP013033_00039 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CP013033_00039 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 CP013033_00039 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP013033_00039 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP013033_00039 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CP013033_00039 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 CP013033_00039 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 CP013033_00040 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP013033_00040 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP013033_00040 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP013033_00040 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CP013033_00040 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 CP013033_00041 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 CP013033_00041 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 CP013033_00041 - 145 0.08 12.7 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CP013033_00041 - 145 3.9 7.4 5.6 1 2 0.00081 3.6 7.5 2.3 36 49 29 42 2 47 0.91 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CP013033_00041 - 145 3.9 7.4 5.6 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 CP013033_00042 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 CP013033_00043 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 CP013033_00043 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 CP013033_00043 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 CP013033_00043 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP013033_00043 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP013033_00043 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 CP013033_00045 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP013033_00045 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 CP013033_00046 - 730 1.7e-97 327.1 8.2 1 1 2.2e-100 2.3e-97 326.6 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP013033_00046 - 730 4.3e-12 46.1 2.6 1 2 6.1e-15 6.4e-12 45.6 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP013033_00046 - 730 4.3e-12 46.1 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 CP013033_00046 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP013033_00046 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP013033_00046 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP013033_00046 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP013033_00046 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CP013033_00046 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP013033_00046 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CP013033_00046 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP013033_00046 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 CP013033_00046 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 CP013033_00046 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 CP013033_00046 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP013033_00046 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CP013033_00046 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP013033_00046 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 CP013033_00046 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 CP013033_00046 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP013033_00046 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 CP013033_00046 - 730 0.43 10.8 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP013033_00046 - 730 0.43 10.8 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP013033_00046 - 730 0.43 10.8 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 CP013033_00046 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 CP013033_00046 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 CP013033_00046 - 730 0.63 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP013033_00046 - 730 0.63 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 CP013033_00046 - 730 0.73 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 CP013033_00046 - 730 0.73 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 CP013033_00046 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 CP013033_00046 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 CP013033_00046 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 CP013033_00046 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type TrbC PF04956.13 99 CP013035_00002 - 87 1.4e-15 57.3 6.9 1 1 1.8e-19 1.6e-15 57.1 6.9 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP013035_00002 - 87 0.041 13.8 3.5 1 1 5.4e-06 0.049 13.5 3.3 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 CP013035_00004 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP013035_00004 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 CP013035_00004 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase Resolvase PF00239.21 146 CP013035_00005 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP013035_00005 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP013035_00005 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 CP013035_00005 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP013035_00005 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP013035_00005 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP013035_00005 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 CP013035_00005 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP013035_00005 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP013035_00005 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat AAA_25 PF13481.6 194 CP013035_00006 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 CP013035_00006 - 597 0.00073 19.0 0.0 1 2 1.6e-06 0.0042 16.5 0.0 16 117 30 136 23 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP013035_00006 - 597 0.00073 19.0 0.0 2 2 0.014 37 3.5 0.0 123 183 114 176 98 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP013035_00006 - 597 0.0032 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP013035_00006 - 597 0.0032 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 CP013035_00006 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP013035_00006 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 CP013035_00006 - 597 0.028 13.8 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 CP013035_00006 - 597 0.028 13.8 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 CP013035_00006 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 CP013035_00006 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 CP013035_00006 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain HicB_lk_antitox PF15919.5 123 CP013035_00007 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 CP013035_00009 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 CP013035_00009 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 CP013035_00009 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) UBA_6 PF18039.1 42 CP013035_00010 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 CP013035_00010 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 CP013035_00010 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 CP013035_00010 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region DUF4223 PF13978.6 54 CP013035_00011 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 CP013035_00011 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 CP013035_00011 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 CP013035_00012 - 408 2.3e-08 34.3 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 CP013035_00012 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 CP013035_00012 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 CP013035_00012 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP013035_00012 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF2400 PF09674.10 227 CP013035_00013 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 CP013035_00013 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Sds3 PF08598.11 218 CP013035_00015 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 CP013035_00015 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP013035_00015 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 CP013035_00015 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 CP013035_00015 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 CP013035_00016 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP013035_00016 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP013035_00016 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP013035_00016 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP013035_00016 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP013035_00016 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP013035_00016 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 CP013035_00016 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP013035_00016 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 CP013035_00016 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP013035_00016 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Relaxase PF03432.14 242 CP013035_00017 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP013035_00017 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain Acetyltransf_7 PF13508.7 76 CP013035_00018 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 CP013035_00018 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family SNF2_N PF00176.23 350 CP013035_00019 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP013035_00019 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP013035_00019 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 CP013035_00019 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP013035_00019 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP013035_00019 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP013035_00019 - 1932 9.8e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP013035_00019 - 1932 9.8e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP013035_00019 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 CP013035_00019 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP013035_00019 - 1932 2.9e-05 24.5 0.6 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP013035_00019 - 1932 2.9e-05 24.5 0.6 2 2 1.5 5.3e+03 -2.0 0.0 41 81 661 701 646 719 0.66 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 CP013035_00020 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 CP013035_00021 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP013035_00021 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP013035_00021 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP013035_00021 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP013035_00021 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP013035_00021 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 CP013035_00022 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP013035_00022 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 CP013035_00023 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP013035_00023 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP013035_00023 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP013035_00023 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP013035_00023 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP013035_00023 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 CP013035_00024 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 CP013035_00024 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP013035_00024 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 CP013035_00024 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 CP013035_00024 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 CP013035_00024 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 CP013035_00024 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP013035_00024 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP013035_00024 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 CP013035_00025 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CP013035_00025 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain Lip_prot_lig_C PF10437.9 85 CP013035_00026 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 CP013035_00026 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 CP013035_00026 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP013035_00026 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain W2 PF02020.18 79 CP013035_00027 - 266 0.02 15.0 0.1 1 2 0.23 4.1e+03 -2.0 0.0 43 65 155 177 150 179 0.61 eIF4-gamma/eIF5/eIF2-epsilon W2 PF02020.18 79 CP013035_00027 - 266 0.02 15.0 0.1 2 2 3.4e-06 0.061 13.5 0.0 38 77 180 240 176 242 0.86 eIF4-gamma/eIF5/eIF2-epsilon APH PF01636.23 240 CP013035_00028 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 CP013035_00028 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 CP013035_00028 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 CP013035_00028 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family GTP_EFTU PF00009.27 194 CP013035_00029 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP013035_00029 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP013035_00029 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP013035_00029 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP013035_00029 - 639 2.2e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP013035_00029 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP013035_00029 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP013035_00029 - 639 0.0095 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP013035_00029 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP013035_00029 - 639 0.049 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 CP013035_00031 - 473 5.2e-05 23.2 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP013035_00031 - 473 0.022 14.7 4.0 1 2 0.14 1.2e+03 -0.7 0.2 12 60 218 271 211 299 0.70 Intein splicing domain Intein_splicing PF14890.6 134 CP013035_00031 - 473 0.022 14.7 4.0 2 2 3.6e-06 0.032 14.2 1.5 37 125 311 444 264 453 0.74 Intein splicing domain Topoisom_bac PF01131.20 413 CP013035_00032 - 676 9.9e-97 324.5 8.2 1 1 4.5e-100 1.4e-96 324.1 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP013035_00032 - 676 1.4e-12 47.7 0.4 1 2 3.1e-15 9.1e-12 45.1 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP013035_00032 - 676 1.4e-12 47.7 0.4 2 2 1.2 3.7e+03 -1.8 0.1 38 55 537 555 487 569 0.63 Toprim domain zinc_ribbon_9 PF14369.6 35 CP013035_00032 - 676 0.05 13.9 0.7 1 2 2.9 8.5e+03 -2.9 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP013035_00032 - 676 0.05 13.9 0.7 2 2 2.7e-05 0.079 13.2 0.0 18 35 624 641 614 641 0.76 zinc-ribbon zf-C4_Topoisom PF01396.19 39 CP013035_00032 - 676 0.057 13.2 2.4 1 1 5.4e-05 0.16 11.8 2.4 2 27 628 656 627 665 0.89 Topoisomerase DNA binding C4 zinc finger EF-hand_8 PF13833.6 55 CP013035_00032 - 676 0.077 12.9 0.0 1 1 9.3e-05 0.28 11.1 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 CP013035_00032 - 676 0.27 11.4 2.9 1 3 0.59 1.8e+03 -0.8 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP013035_00032 - 676 0.27 11.4 2.9 2 3 1.6 4.9e+03 -2.2 0.1 46 63 472 489 470 493 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP013035_00032 - 676 0.27 11.4 2.9 3 3 0.00026 0.78 10.0 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain Redoxin PF08534.10 147 CP013035_00033 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP013035_00033 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 CP013035_00035 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 CP013035_00035 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 CP013035_00035 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 CP013035_00035 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP013035_00035 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP013035_00035 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 CP013035_00036 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 CP013035_00037 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 CP013035_00037 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 CP013035_00037 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CP013035_00037 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CP013035_00037 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 CP013035_00038 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP013035_00038 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP013035_00038 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP013035_00038 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CP013035_00038 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 CP013035_00039 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP013035_00039 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP013035_00039 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP013035_00039 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP013035_00039 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CP013035_00039 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CP013035_00039 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CP013035_00039 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP013035_00039 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CP013035_00039 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP013035_00039 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP013035_00039 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CP013035_00039 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CP013035_00039 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CP013035_00039 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP013035_00039 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CP013035_00039 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CP013035_00039 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CP013035_00039 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CP013035_00039 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CP013035_00039 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP013035_00039 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CP013035_00039 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP013035_00039 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP013035_00039 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CP013035_00039 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CP013035_00039 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 CP013035_00039 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP013035_00039 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP013035_00039 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CP013035_00039 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 CP013035_00039 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 CP013035_00040 - 390 3.1e-48 164.1 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 193 374 193 374 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP013035_00040 - 390 0.028 13.5 0.1 1 1 4.8e-06 0.043 12.9 0.1 31 81 321 371 304 376 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 CP013035_00041 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CP013035_00041 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CP013035_00041 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 CP013035_00042 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CP013035_00042 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 CP013035_00043 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CP013035_00043 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 CP013035_00044 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP013035_00044 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP013035_00044 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP013035_00044 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 CP013035_00044 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 CP013035_00045 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 CP013035_00045 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP013035_00045 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CP013035_00045 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP013035_00045 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 CP013035_00045 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 CP013035_00045 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 CP013035_00045 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP013035_00045 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 CP013035_00045 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 CP013035_00045 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 CP013035_00045 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 CP013035_00045 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 CP013035_00045 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 CP013035_00045 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain IF2_N PF04760.15 54 CP013035_00046 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP013035_00046 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP013035_00046 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP013035_00046 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP013035_00046 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP013035_00046 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP013035_00046 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 CP013035_00047 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3251 PF11622.8 165 CP013035_00048 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 CP013035_00048 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 CP013035_00048 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 CP013035_00048 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP013035_00048 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP013035_00048 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 CP013035_00048 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP013035_00048 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP013035_00048 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 CP013035_00048 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 CP013035_00048 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 CP013035_00048 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP013035_00048 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP013035_00048 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) Phage_pRha PF09669.10 88 CP013035_00049 - 185 6.3e-29 100.4 0.0 1 1 2.7e-32 9.7e-29 99.8 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 CP013035_00049 - 185 0.0015 18.6 0.0 1 1 9.1e-07 0.0033 17.5 0.0 23 90 27 94 23 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 CP013035_00049 - 185 0.045 13.3 0.1 1 2 0.066 2.4e+02 1.3 0.0 80 118 33 71 5 80 0.79 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 CP013035_00049 - 185 0.045 13.3 0.1 2 2 0.00012 0.42 10.2 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 CP013035_00049 - 185 0.086 12.9 0.0 1 1 5.8e-05 0.21 11.6 0.0 77 131 80 130 63 134 0.84 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 CP013035_00049 - 185 0.73 9.9 5.7 1 3 0.054 1.9e+02 2.1 0.0 43 53 15 25 4 29 0.81 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CP013035_00049 - 185 0.73 9.9 5.7 2 3 0.0022 7.9 6.6 0.8 5 26 30 50 26 61 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CP013035_00049 - 185 0.73 9.9 5.7 3 3 0.064 2.3e+02 1.9 0.0 10 42 116 154 108 160 0.67 Sporulation protein Cse60 CagE_TrbE_VirB PF03135.14 206 CP013035_00050 - 491 2e-06 28.0 0.4 1 2 1.2e-09 5.3e-06 26.7 0.0 162 206 7 51 2 51 0.93 CagE, TrbE, VirB family, component of type IV transporter system CagE_TrbE_VirB PF03135.14 206 CP013035_00050 - 491 2e-06 28.0 0.4 2 2 2.2 9.9e+03 -3.6 0.1 104 135 370 382 348 395 0.48 CagE, TrbE, VirB family, component of type IV transporter system AAA_10 PF12846.7 362 CP013035_00050 - 491 7.4e-06 25.1 1.2 1 1 4.5e-09 2e-05 23.7 1.2 23 321 116 415 104 429 0.74 AAA-like domain HNOBA PF07701.14 221 CP013035_00050 - 491 0.017 14.6 0.1 1 1 6.1e-06 0.028 13.9 0.1 53 153 193 413 191 421 0.86 Heme NO binding associated cEGF PF12662.7 24 CP013035_00050 - 491 0.2 11.6 0.0 1 1 0.0001 0.47 10.4 0.0 14 24 328 339 324 339 0.82 Complement Clr-like EGF-like CagX PF03524.15 211 CP013037_00002 - 295 2e-54 184.5 1.5 1 1 3.7e-58 3.3e-54 183.8 1.5 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CP013037_00002 - 295 0.072 12.9 0.5 1 2 1.8e-05 0.16 11.8 0.0 1 51 1 51 1 66 0.92 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CP013037_00002 - 295 0.072 12.9 0.5 2 2 1.1 9.7e+03 -3.7 0.1 50 62 130 142 124 149 0.68 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 CP013037_00003 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CP013037_00003 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 CP013037_00004 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CP013037_00004 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 CP013037_00005 - 332 2.8e-30 105.7 31.4 1 2 4.7e-34 2.8e-30 105.7 31.4 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP013037_00005 - 332 2.8e-30 105.7 31.4 2 2 0.24 1.4e+03 -1.2 0.1 61 91 293 329 260 332 0.58 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP013037_00005 - 332 0.16 11.8 1.2 1 2 0.16 9.4e+02 -0.3 0.1 35 67 67 105 60 118 0.65 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP013037_00005 - 332 0.16 11.8 1.2 2 2 0.00011 0.68 9.8 0.1 28 81 238 288 209 301 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 CP013037_00005 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 CP013037_00006 - 323 4.7e-28 98.9 14.1 1 1 2.7e-31 6.1e-28 98.6 14.1 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 CP013037_00006 - 323 0.0059 16.7 0.7 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP013037_00006 - 323 0.0059 16.7 0.7 2 2 9.1e-06 0.02 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CP013037_00006 - 323 0.011 16.4 5.4 1 3 0.067 1.5e+02 3.0 0.3 92 135 104 145 41 149 0.59 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP013037_00006 - 323 0.011 16.4 5.4 2 3 0.12 2.6e+02 2.2 0.5 52 135 111 145 93 185 0.58 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP013037_00006 - 323 0.011 16.4 5.4 3 3 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 CP013037_00006 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 CP013037_00006 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 CP013037_00006 - 323 0.069 13.8 0.9 1 2 2.2 4.9e+03 -1.8 0.0 55 72 124 141 101 172 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP013037_00006 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain Allexi_40kDa PF05549.11 271 CP013037_00006 - 323 0.81 9.1 5.0 1 2 0.21 4.8e+02 0.1 0.1 37 123 47 138 33 177 0.61 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 CP013037_00006 - 323 0.81 9.1 5.0 2 2 0.0002 0.46 10.0 1.6 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein THOC7 PF05615.13 132 CP013037_00006 - 323 3 8.1 11.6 1 2 0.00072 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 CP013037_00006 - 323 3 8.1 11.6 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 DHR10 PF18595.1 117 CP013037_00006 - 323 5.7 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 CP013037_00006 - 323 5.7 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain IF2_N PF04760.15 54 CP013037_00007 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP013037_00007 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP013037_00007 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP013037_00007 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP013037_00007 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP013037_00007 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP013037_00007 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 CP013037_00008 - 141 7e-25 87.1 0.1 1 1 4.9e-29 8.8e-25 86.8 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3895 PF13034.6 76 CP013037_00009 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 CP013037_00009 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) Phage_pRha PF09669.10 88 CP013037_00010 - 185 6.4e-29 100.4 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 CP013037_00010 - 185 0.0014 18.7 0.0 1 1 8.6e-07 0.0031 17.6 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 CP013037_00010 - 185 0.011 15.3 0.4 1 2 0.05 1.8e+02 1.6 0.1 80 118 33 71 5 80 0.74 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 CP013037_00010 - 185 0.011 15.3 0.4 2 2 3.3e-05 0.12 12.0 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 CP013037_00010 - 185 0.061 13.3 0.1 1 1 4.6e-05 0.16 11.9 0.0 77 131 80 130 69 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 CP013037_00010 - 185 1.1 9.4 7.5 1 3 0.019 69 3.6 0.1 40 53 12 25 3 29 0.83 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CP013037_00010 - 185 1.1 9.4 7.5 2 3 0.0022 7.9 6.6 0.9 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CP013037_00010 - 185 1.1 9.4 7.5 3 3 0.064 2.3e+02 1.9 0.0 10 42 116 154 109 160 0.66 Sporulation protein Cse60 CagE_TrbE_VirB PF03135.14 206 CP013037_00011 - 922 2.1e-51 174.9 0.9 1 1 1.2e-54 5.2e-51 173.7 0.9 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP013037_00011 - 922 7.2e-21 74.2 1.2 1 1 2.8e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 CP013037_00011 - 922 3.8e-07 29.3 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 CP013037_00011 - 922 0.038 14.1 5.4 1 5 0.48 2.2e+03 -1.5 0.1 96 202 139 253 127 279 0.53 Helicase HerA, central domain DUF87 PF01935.17 227 CP013037_00011 - 922 0.038 14.1 5.4 2 5 0.37 1.7e+03 -1.1 0.1 88 126 264 300 242 417 0.71 Helicase HerA, central domain DUF87 PF01935.17 227 CP013037_00011 - 922 0.038 14.1 5.4 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 CP013037_00011 - 922 0.038 14.1 5.4 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 CP013037_00011 - 922 0.038 14.1 5.4 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain TrbC PF04956.13 99 CP013037_00012 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP013037_00012 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 CP013037_00014 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP013037_00014 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 CP013037_00014 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase Resolvase PF00239.21 146 CP013037_00015 - 204 1.6e-33 115.9 0.7 1 1 4.7e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP013037_00015 - 204 0.024 14.4 0.8 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP013037_00015 - 204 0.024 14.4 0.8 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 CP013037_00015 - 204 0.024 14.4 0.8 3 3 0.01 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP013037_00015 - 204 0.028 14.5 4.9 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP013037_00015 - 204 0.028 14.5 4.9 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP013037_00015 - 204 0.028 14.5 4.9 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 CP013037_00015 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP013037_00015 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP013037_00015 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat GBR_NSP5 PF17580.2 176 CP013037_00017 - 115 0.088 12.6 4.3 1 2 0.17 1.5e+03 -1.1 0.0 135 151 11 27 3 51 0.62 Group B Rotavirus Non-structural protein 5 GBR_NSP5 PF17580.2 176 CP013037_00017 - 115 0.088 12.6 4.3 2 2 4.2e-06 0.038 13.8 2.0 17 64 52 99 34 106 0.78 Group B Rotavirus Non-structural protein 5 FeoB_associated PF12669.7 44 CP013037_00017 - 115 0.4 11.1 1.6 1 2 0.00017 1.5 9.3 0.3 2 25 25 48 23 50 0.90 FeoB-associated Cys-rich membrane protein FeoB_associated PF12669.7 44 CP013037_00017 - 115 0.4 11.1 1.6 2 2 0.12 1.1e+03 0.1 0.1 18 26 89 97 88 101 0.86 FeoB-associated Cys-rich membrane protein AAA_25 PF13481.6 194 CP013037_00018 - 597 1.8e-15 57.0 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 CP013037_00018 - 597 0.00087 18.7 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP013037_00018 - 597 0.00087 18.7 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP013037_00018 - 597 0.0012 18.6 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP013037_00018 - 597 0.0012 18.6 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 CP013037_00018 - 597 0.0035 17.1 0.0 1 1 2.5e-06 0.0073 16.0 0.0 5 122 36 172 32 207 0.72 AAA domain ATPase PF06745.13 231 CP013037_00018 - 597 0.011 15.1 0.1 1 2 2.1e-05 0.064 12.6 0.0 16 70 30 83 26 214 0.87 KaiC ATPase PF06745.13 231 CP013037_00018 - 597 0.011 15.1 0.1 2 2 0.51 1.5e+03 -1.7 0.0 137 160 329 352 321 358 0.83 KaiC CbiA PF01656.23 128 CP013037_00018 - 597 0.18 11.9 0.9 1 1 0.00018 0.53 10.4 1.0 1 29 35 63 35 537 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain HicB_lk_antitox PF15919.5 123 CP013037_00019 - 72 3.6e-09 36.8 0.0 1 1 4.2e-13 3.8e-09 36.7 0.0 3 60 5 61 3 71 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 CP013037_00019 - 72 0.065 12.6 0.0 1 1 7.9e-06 0.071 12.5 0.0 12 60 21 69 15 72 0.92 IRSp53/MIM homology domain Pkinase PF00069.25 264 CP013037_00021 - 390 2.6e-30 105.7 7.7 1 1 1.2e-33 4.2e-30 105.0 7.7 5 202 156 356 153 390 0.81 Protein kinase domain Pkinase_Tyr PF07714.17 259 CP013037_00021 - 390 1.6e-26 93.2 0.7 1 1 6.2e-30 2.2e-26 92.7 0.7 6 163 157 308 154 380 0.85 Protein tyrosine kinase Pkinase_fungal PF17667.1 408 CP013037_00021 - 390 4.7e-06 25.6 0.7 1 1 2e-09 7e-06 25.1 0.7 314 364 254 301 240 319 0.77 Fungal protein kinase DUF2841 PF11001.8 124 CP013037_00021 - 390 0.0036 17.4 0.7 1 2 2.2 7.8e+03 -3.1 0.0 10 56 22 69 17 74 0.59 Protein of unknown function (DUF2841) DUF2841 PF11001.8 124 CP013037_00021 - 390 0.0036 17.4 0.7 2 2 3.3e-06 0.012 15.7 0.7 15 88 179 263 162 323 0.71 Protein of unknown function (DUF2841) ORC6 PF05460.13 357 CP013037_00021 - 390 0.011 15.0 0.2 1 1 4.6e-06 0.016 14.5 0.2 192 282 163 254 117 268 0.79 Origin recognition complex subunit 6 (ORC6) TOPRIM_C PF16898.5 128 CP013037_00022 - 69 0.029 14.7 1.5 1 1 1.7e-06 0.031 14.6 1.5 63 124 8 68 2 69 0.88 C-terminal associated domain of TOPRIM DUF4223 PF13978.6 54 CP013037_00023 - 87 0.0072 16.3 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 CP013037_00023 - 87 0.0072 16.3 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 CP013037_00023 - 87 0.12 12.4 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 CP013037_00024 - 409 3.6e-08 33.7 0.0 1 1 1.6e-11 7.3e-08 32.7 0.0 3 93 270 374 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 CP013037_00024 - 409 0.083 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain 5_3_exonuc PF01367.20 97 CP013037_00024 - 409 0.083 13.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP013037_00024 - 409 0.083 13.5 4.7 2 2 0.0001 0.46 11.1 0.4 15 81 321 383 319 404 0.72 5'-3' exonuclease, C-terminal SAM fold Toprim_4 PF13662.6 89 CP013037_00024 - 409 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain DUF2400 PF09674.10 227 CP013037_00025 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 CP013037_00025 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Sds3 PF08598.11 218 CP013037_00027 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 CP013037_00027 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP013037_00027 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 CP013037_00027 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 CP013037_00027 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 CP013037_00028 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP013037_00028 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP013037_00028 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP013037_00028 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP013037_00028 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP013037_00028 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP013037_00028 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 CP013037_00028 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP013037_00028 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 CP013037_00028 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP013037_00028 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain Relaxase PF03432.14 242 CP013037_00029 - 462 5.1e-10 39.4 7.2 1 2 2.9e-14 5.1e-10 39.4 7.2 48 228 119 296 70 309 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP013037_00029 - 462 5.1e-10 39.4 7.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_19 PF12844.7 65 CP013037_00030 - 314 5.9e-05 23.0 0.2 1 2 0.029 44 4.2 0.0 11 31 9 29 2 42 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 CP013037_00030 - 314 5.9e-05 23.0 0.2 2 2 7e-06 0.01 15.8 0.0 27 64 116 152 91 153 0.90 Helix-turn-helix domain HTH_3 PF01381.22 55 CP013037_00030 - 314 0.0013 18.8 0.0 1 2 7e-06 0.01 15.8 0.0 2 29 3 30 2 30 0.85 Helix-turn-helix HTH_3 PF01381.22 55 CP013037_00030 - 314 0.0013 18.8 0.0 2 2 0.57 8.6e+02 0.1 0.0 26 55 118 147 107 147 0.85 Helix-turn-helix Phage_CI_repr PF07022.13 65 CP013037_00030 - 314 0.0024 17.9 0.0 1 2 0.00012 0.18 11.9 0.1 14 49 12 47 8 50 0.82 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 CP013037_00030 - 314 0.0024 17.9 0.0 2 2 0.055 82 3.4 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 CP013037_00030 - 314 0.0046 16.5 0.0 1 2 4.2e-05 0.062 12.9 0.1 17 34 10 27 9 27 0.94 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP013037_00030 - 314 0.0046 16.5 0.0 2 2 0.25 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding Imm3 PF14425.6 119 CP013037_00030 - 314 0.028 14.5 0.2 1 1 3.8e-05 0.057 13.5 0.2 26 113 18 104 1 109 0.73 Immunity protein Imm3 YdaS_antitoxin PF15943.5 65 CP013037_00030 - 314 0.028 14.3 0.1 1 2 7.5e-05 0.11 12.3 0.0 10 36 12 37 2 49 0.79 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 CP013037_00030 - 314 0.028 14.3 0.1 2 2 2.1 3.2e+03 -1.9 0.1 38 47 290 299 289 300 0.87 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_AsnC-type PF13404.6 42 CP013037_00030 - 314 0.041 13.7 0.1 1 2 7.3e-05 0.11 12.3 0.0 17 34 10 27 9 29 0.94 AsnC-type helix-turn-helix domain HTH_AsnC-type PF13404.6 42 CP013037_00030 - 314 0.041 13.7 0.1 2 2 5.4 8e+03 -3.2 0.0 27 36 99 108 98 110 0.81 AsnC-type helix-turn-helix domain Crp PF00325.20 32 CP013037_00030 - 314 0.053 13.2 0.0 1 1 6.4e-05 0.095 12.4 0.0 1 15 9 23 9 27 0.89 Bacterial regulatory proteins, crp family HTH_28 PF13518.6 52 CP013037_00030 - 314 0.054 13.6 0.0 1 1 8.9e-05 0.13 12.4 0.0 13 32 11 30 9 32 0.94 Helix-turn-helix domain HTH_23 PF13384.6 50 CP013037_00030 - 314 0.072 12.9 0.0 1 1 0.00011 0.17 11.7 0.0 17 37 10 30 1 36 0.86 Homeodomain-like domain HTH_Mga PF08280.11 60 CP013037_00030 - 314 0.097 12.7 2.9 1 3 0.0012 1.8 8.7 0.2 20 37 10 27 6 30 0.88 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP013037_00030 - 314 0.097 12.7 2.9 2 3 0.056 83 3.3 0.0 25 59 41 75 32 76 0.80 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP013037_00030 - 314 0.097 12.7 2.9 3 3 7.7 1.2e+04 -3.5 0.0 46 50 94 98 86 105 0.47 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.6 52 CP013037_00030 - 314 0.21 11.0 0.1 1 1 0.00026 0.39 10.2 0.1 26 47 10 30 5 33 0.89 Helix-turn-helix domain of transposase family ISL3 SNF2_N PF00176.23 350 CP013037_00031 - 1932 1.4e-16 60.1 0.8 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP013037_00031 - 1932 1.4e-16 60.1 0.8 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP013037_00031 - 1932 1.4e-16 60.1 0.8 3 3 1.1 3.9e+03 -3.8 0.0 172 199 1879 1907 1860 1915 0.75 SNF2 family N-terminal domain ResIII PF04851.15 171 CP013037_00031 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP013037_00031 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP013037_00031 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.3 36 121 1801 1904 1749 1929 0.62 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP013037_00031 - 1932 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP013037_00031 - 1932 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP013037_00031 - 1932 1.3e-05 25.1 2.0 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 CP013037_00031 - 1932 1.3e-05 25.1 2.0 2 2 0.15 5.4e+02 0.2 0.1 120 143 1884 1909 1831 1929 0.67 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP013037_00031 - 1932 3e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP013037_00031 - 1932 3e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 CP013037_00032 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 CP013037_00033 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP013037_00033 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP013037_00033 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP013037_00033 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP013037_00033 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP013037_00033 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 CP013037_00034 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP013037_00034 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 CP013037_00035 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP013037_00035 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP013037_00035 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP013037_00035 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP013037_00035 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP013037_00035 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 CP013037_00036 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 CP013037_00036 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP013037_00036 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 CP013037_00036 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 CP013037_00036 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 CP013037_00036 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 CP013037_00036 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 CP013037_00036 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 CP013037_00036 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP013037_00036 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP013037_00036 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 CP013037_00036 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase GTP_EFTU PF00009.27 194 CP013037_00037 - 639 8.1e-59 198.4 0.4 1 1 5.7e-62 1.1e-58 198.0 0.4 2 191 2 237 1 240 0.93 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP013037_00037 - 639 1.3e-22 79.9 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP013037_00037 - 639 1.3e-22 79.9 0.0 2 2 1.7e-25 3.5e-22 78.5 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP013037_00037 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP013037_00037 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP013037_00037 - 639 1.8e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP013037_00037 - 639 0.00029 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP013037_00037 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP013037_00037 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP013037_00037 - 639 0.047 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 CP013037_00039 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP013037_00039 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain Topoisom_bac PF01131.20 413 CP013037_00040 - 648 1.2e-97 327.5 8.2 1 1 5.5e-101 1.6e-97 327.1 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP013037_00040 - 648 3.6e-12 46.4 2.9 1 2 1.8e-15 5.3e-12 45.9 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP013037_00040 - 648 3.6e-12 46.4 2.9 2 2 1.3 3.9e+03 -1.9 0.6 71 77 514 520 476 564 0.60 Toprim domain zf-C4_Topoisom PF01396.19 39 CP013037_00040 - 648 0.011 15.5 1.7 1 1 9.4e-06 0.028 14.2 1.7 2 21 628 648 627 648 0.94 Topoisomerase DNA binding C4 zinc finger EF-hand_8 PF13833.6 55 CP013037_00040 - 648 0.077 12.9 0.0 1 1 8.8e-05 0.26 11.1 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zinc_ribbon_9 PF14369.6 35 CP013037_00040 - 648 0.22 11.8 0.7 1 2 2.7 8.2e+03 -2.8 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP013037_00040 - 648 0.22 11.8 0.7 2 2 0.00012 0.36 11.1 0.0 18 32 624 638 614 640 0.76 zinc-ribbon HTH_34 PF13601.6 80 CP013037_00040 - 648 0.22 11.7 2.8 1 3 0.56 1.7e+03 -0.7 0.0 26 47 362 383 351 388 0.81 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP013037_00040 - 648 0.22 11.7 2.8 2 3 1.5 4.6e+03 -2.1 0.1 46 63 472 489 469 493 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP013037_00040 - 648 0.22 11.7 2.8 3 3 0.00025 0.74 10.0 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain Redoxin PF08534.10 147 CP013037_00041 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP013037_00041 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 CP013037_00043 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 CP013037_00043 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 CP013037_00043 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 CP013037_00043 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP013037_00043 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP013037_00043 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 CP013037_00044 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 CP013037_00045 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 CP013037_00045 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 CP013037_00045 - 145 0.08 12.7 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CP013037_00045 - 145 3.9 7.4 5.6 1 2 0.00081 3.6 7.5 2.3 36 49 29 42 2 47 0.91 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CP013037_00045 - 145 3.9 7.4 5.6 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 CP013037_00046 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP013037_00046 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP013037_00046 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP013037_00046 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CP013037_00046 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 CP013037_00047 - 330 4.6e-54 183.3 0.0 1 1 9.5e-57 5.3e-54 183.1 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP013037_00047 - 330 6.1e-05 23.6 0.0 1 1 2.2e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP013037_00047 - 330 0.00016 21.2 0.0 1 1 4.4e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP013037_00047 - 330 0.00022 20.8 0.0 1 1 6.7e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP013037_00047 - 330 0.0014 18.9 0.0 1 1 4.5e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CP013037_00047 - 330 0.0027 17.5 0.0 1 1 9.3e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CP013037_00047 - 330 0.0031 17.3 0.0 1 1 8.3e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CP013037_00047 - 330 0.0037 17.3 0.0 1 1 1.3e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP013037_00047 - 330 0.0048 15.9 0.0 1 1 1.3e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CP013037_00047 - 330 0.0072 16.3 0.0 1 1 2.2e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP013037_00047 - 330 0.0087 15.4 0.0 1 1 2.5e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP013037_00047 - 330 0.0087 16.0 0.0 1 1 2.1e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CP013037_00047 - 330 0.018 14.8 0.0 1 1 6.4e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CP013037_00047 - 330 0.021 14.8 0.0 1 1 7.4e-05 0.041 13.9 0.0 10 50 147 186 132 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CP013037_00047 - 330 0.021 13.7 0.0 1 1 5.9e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP013037_00047 - 330 0.023 14.8 0.1 1 1 8.1e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CP013037_00047 - 330 0.024 14.4 0.0 1 1 9.4e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CP013037_00047 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CP013037_00047 - 330 0.035 13.5 0.0 1 1 9.9e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein ATP_bind_1 PF03029.17 241 CP013037_00047 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 CP013037_00047 - 330 0.038 14.4 0.0 1 1 0.00019 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 CP013037_00047 - 330 0.04 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CP013037_00047 - 330 0.052 13.3 0.0 1 1 0.00019 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP013037_00047 - 330 0.062 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP013037_00047 - 330 0.064 13.6 0.0 1 1 0.00018 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain MobB PF03205.14 133 CP013037_00047 - 330 0.085 12.8 0.0 1 1 0.00035 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 CP013037_00047 - 330 0.092 12.7 0.4 1 1 0.00043 0.24 11.3 0.2 71 102 149 179 131 199 0.78 Microtubule binding NTPase_1 PF03266.15 168 CP013037_00047 - 330 0.12 12.3 0.1 1 1 0.0004 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP013037_00047 - 330 0.15 11.7 0.0 1 1 0.00041 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 130 CP013037_00047 - 330 0.15 12.6 0.1 1 1 0.00067 0.38 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain AAA_30 PF13604.6 192 CP013037_00047 - 330 0.2 11.4 0.0 1 1 0.00055 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CP013037_00047 - 330 0.22 12.0 2.5 1 1 0.00057 0.32 11.5 1.3 22 37 163 178 152 184 0.88 AAA domain TrbI PF03743.14 187 CP013037_00048 - 85 1.1e-10 41.6 0.1 1 1 1.4e-14 1.3e-10 41.5 0.1 131 187 19 69 2 69 0.80 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP013037_00048 - 85 0.0018 17.4 0.1 1 1 2.2e-07 0.002 17.3 0.1 31 81 16 66 5 72 0.89 HaeIII restriction endonuclease Adenyl_transf PF04439.12 279 CP013117_00001 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 CP013117_00002 - 180 3.8e-20 72.3 0.1 1 1 2.3e-23 5.3e-20 71.8 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 CP013117_00002 - 180 1.2e-13 51.2 0.1 1 1 9.1e-17 2e-13 50.5 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 CP013117_00002 - 180 2.7e-12 46.7 0.0 1 1 1.6e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 CP013117_00002 - 180 1.1e-09 38.6 1.1 1 1 6e-13 1.3e-09 38.3 1.1 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 CP013117_00002 - 180 0.0011 19.7 0.0 1 1 6.1e-07 0.0014 19.4 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 CP013117_00002 - 180 0.0011 19.0 0.0 1 1 1.2e-06 0.0027 17.8 0.0 6 58 79 130 73 132 0.85 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 CP013117_00002 - 180 0.015 15.4 0.0 1 1 2.6e-05 0.059 13.5 0.0 21 126 50 154 43 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 CP013117_00002 - 180 0.038 14.0 0.0 1 1 2.9e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein APH PF01636.23 240 CP013117_00003 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 CP013117_00003 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 CP013117_00003 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 CP013117_00003 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family W2 PF02020.18 79 CP013117_00004 - 266 0.02 15.0 0.1 1 2 0.23 4.1e+03 -2.0 0.0 43 65 155 177 150 179 0.61 eIF4-gamma/eIF5/eIF2-epsilon W2 PF02020.18 79 CP013117_00004 - 266 0.02 15.0 0.1 2 2 3.4e-06 0.061 13.5 0.0 38 77 180 240 176 242 0.86 eIF4-gamma/eIF5/eIF2-epsilon Lip_prot_lig_C PF10437.9 85 CP013117_00005 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 CP013117_00005 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 CP013117_00005 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP013117_00005 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain LysE PF01810.18 193 CP013117_00006 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 CP013117_00006 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP013117_00006 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 CP013117_00006 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 CP013117_00006 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 CP013117_00006 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 CP013117_00006 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 CP013117_00006 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 CP013117_00006 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP013117_00006 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP013117_00006 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 CP013117_00006 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 CP013117_00007 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP013117_00007 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP013117_00007 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP013117_00007 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP013117_00007 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP013117_00007 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 CP013117_00008 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP013117_00008 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 CP013117_00009 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP013117_00009 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP013117_00009 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP013117_00009 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP013117_00009 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP013117_00009 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 CP013117_00010 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 CP013117_00011 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP013117_00011 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP013117_00011 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 CP013117_00011 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP013117_00011 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP013117_00011 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP013117_00011 - 1932 9.9e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP013117_00011 - 1932 9.9e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP013117_00011 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 CP013117_00011 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP013117_00011 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP013117_00011 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 CP013117_00012 - 211 0.0008 19.8 0.0 1 1 2.1e-07 0.0019 18.6 0.0 29 75 56 120 8 121 0.67 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 CP013117_00012 - 211 0.032 14.5 0.1 1 1 7.4e-06 0.066 13.4 0.1 59 92 43 86 16 119 0.74 Acetyltransferase (GNAT) family Peptidase_S24 PF00717.23 70 CP013117_00013 - 222 3.3e-12 46.2 0.0 1 1 2.2e-15 6.4e-12 45.2 0.0 3 68 142 205 140 211 0.94 Peptidase S24-like Phage_CI_repr PF07022.13 65 CP013117_00013 - 222 0.027 14.5 0.0 1 1 2e-05 0.06 13.4 0.0 15 60 37 82 18 87 0.87 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 CP013117_00013 - 222 0.048 13.3 0.0 1 2 0.00011 0.33 10.7 0.0 26 49 34 57 33 57 0.90 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 54 CP013117_00013 - 222 0.048 13.3 0.0 2 2 0.35 1e+03 -0.6 0.0 7 19 191 203 190 205 0.89 Sigma-70, region 4 HTH_10 PF04967.12 53 CP013117_00013 - 222 0.056 13.3 0.0 1 1 3.2e-05 0.097 12.5 0.0 21 41 32 52 30 54 0.90 HTH DNA binding domain Fe_dep_repress PF01325.19 60 CP013117_00013 - 222 0.16 12.2 0.0 1 1 9e-05 0.27 11.5 0.0 16 39 28 51 12 54 0.74 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 50 CP013117_00013 - 222 0.18 11.6 0.0 1 2 0.00024 0.73 9.7 0.0 17 34 34 51 16 54 0.78 Homeodomain-like domain HTH_23 PF13384.6 50 CP013117_00013 - 222 0.18 11.6 0.0 2 2 0.64 1.9e+03 -1.2 0.0 6 16 93 103 92 109 0.73 Homeodomain-like domain RepB-RCR_reg PF10723.9 81 CP013117_00014 - 134 0.057 13.4 1.2 1 1 1.4e-05 0.13 12.3 1.2 22 59 12 49 7 63 0.90 Replication regulatory protein RepB PdaC PF13739.6 95 CP013117_00014 - 134 2.4 9.2 5.8 1 1 0.0011 9.8 7.2 5.8 9 62 24 78 15 129 0.79 Deacetylase PdaC CdhC PF03598.15 155 CP013117_00015 - 64 0.052 13.4 0.0 1 1 5.8e-06 0.052 13.4 0.0 107 145 20 58 5 64 0.89 CO dehydrogenase/acetyl-CoA synthase complex beta subunit SinI PF08671.10 28 CP013117_00015 - 64 0.076 12.8 0.1 1 3 8.5e-06 0.076 12.8 0.1 13 25 29 41 25 41 0.95 Anti-repressor SinI SinI PF08671.10 28 CP013117_00015 - 64 0.076 12.8 0.1 2 3 0.14 1.3e+03 -0.7 0.1 10 15 43 48 43 48 0.84 Anti-repressor SinI SinI PF08671.10 28 CP013117_00015 - 64 0.076 12.8 0.1 3 3 0.5 4.5e+03 -2.4 0.0 3 7 58 62 58 62 0.79 Anti-repressor SinI Ank_2 PF12796.7 83 CP013117_00016 - 95 2.1e-05 25.0 0.1 1 1 5.3e-09 3.2e-05 24.4 0.1 22 77 8 68 2 74 0.77 Ankyrin repeats (3 copies) Ank_3 PF13606.6 31 CP013117_00016 - 95 0.011 16.2 0.1 1 2 0.13 7.9e+02 1.3 0.0 10 23 21 33 14 39 0.57 Ankyrin repeat Ank_3 PF13606.6 31 CP013117_00016 - 95 0.011 16.2 0.1 2 2 3e-05 0.18 12.5 0.0 2 29 44 70 43 72 0.88 Ankyrin repeat DUF3447 PF11929.8 76 CP013117_00016 - 95 0.012 15.6 3.0 1 1 2.1e-06 0.013 15.5 1.4 30 75 10 62 1 63 0.69 Domain of unknown function (DUF3447) MethyltransfD12 PF02086.15 260 CP013117_00017 - 271 1.5e-28 100.2 6.6 1 1 1.7e-32 3e-28 99.2 6.6 1 259 28 252 28 253 0.88 D12 class N6 adenine-specific DNA methyltransferase Phage_GPD PF05954.11 304 CP013117_00018 - 322 3.2e-06 26.7 0.0 1 1 4.1e-10 3.7e-06 26.5 0.0 78 165 102 183 96 309 0.80 Phage late control gene D protein (GPD) PTH2 PF01981.16 117 CP013117_00018 - 322 0.031 14.6 0.1 1 1 7e-06 0.062 13.6 0.1 33 82 100 144 69 151 0.78 Peptidyl-tRNA hydrolase PTH2 Phage_tail_X PF05489.12 60 CP013117_00019 - 63 2.5e-10 39.9 0.0 1 1 1.7e-14 3.1e-10 39.6 0.0 5 58 7 56 3 58 0.87 Phage Tail Protein X Phage_P2_GpU PF06995.11 120 CP013117_00020 - 137 1.2e-18 66.9 0.0 1 1 8.2e-23 1.5e-18 66.6 0.0 4 117 20 133 19 136 0.97 Phage P2 GpU PhageMin_Tail PF10145.9 198 CP013117_00021 - 654 1.5e-22 80.4 18.9 1 4 0.1 1.2e+02 2.5 1.0 120 163 26 68 6 99 0.56 Phage-related minor tail protein PhageMin_Tail PF10145.9 198 CP013117_00021 - 654 1.5e-22 80.4 18.9 2 4 1.4e-25 1.5e-22 80.4 18.9 3 198 116 318 114 318 0.92 Phage-related minor tail protein PhageMin_Tail PF10145.9 198 CP013117_00021 - 654 1.5e-22 80.4 18.9 3 4 0.0065 7.3 6.4 3.4 33 108 307 380 305 386 0.84 Phage-related minor tail protein PhageMin_Tail PF10145.9 198 CP013117_00021 - 654 1.5e-22 80.4 18.9 4 4 0.53 6e+02 0.1 1.0 86 107 358 379 353 461 0.65 Phage-related minor tail protein DUF3450 PF11932.8 241 CP013117_00021 - 654 4.6e-06 26.1 0.6 1 3 0.00013 0.15 11.3 0.0 52 139 19 107 15 113 0.83 Protein of unknown function (DUF3450) DUF3450 PF11932.8 241 CP013117_00021 - 654 4.6e-06 26.1 0.6 2 3 0.014 15 4.8 0.1 13 72 230 291 221 306 0.84 Protein of unknown function (DUF3450) DUF3450 PF11932.8 241 CP013117_00021 - 654 4.6e-06 26.1 0.6 3 3 0.0056 6.2 6.0 0.0 40 113 326 398 322 401 0.82 Protein of unknown function (DUF3450) DLP_helical PF18709.1 339 CP013117_00021 - 654 0.017 14.3 0.4 1 3 0.32 3.6e+02 0.1 1.4 80 209 24 56 17 154 0.69 Dynamin-like helical domain DLP_helical PF18709.1 339 CP013117_00021 - 654 0.017 14.3 0.4 2 3 0.33 3.7e+02 0.1 1.9 165 233 156 225 86 228 0.78 Dynamin-like helical domain DLP_helical PF18709.1 339 CP013117_00021 - 654 0.017 14.3 0.4 3 3 1.5e-05 0.017 14.3 0.4 77 201 245 370 238 399 0.80 Dynamin-like helical domain Dor1 PF04124.12 338 CP013117_00021 - 654 0.037 12.7 1.4 1 2 5.6e-05 0.063 12.0 0.6 33 89 12 109 10 182 0.73 Dor1-like family Dor1 PF04124.12 338 CP013117_00021 - 654 0.037 12.7 1.4 2 2 3.2 3.6e+03 -3.7 0.0 46 77 256 287 249 297 0.74 Dor1-like family HD_2 PF12917.7 182 CP013117_00021 - 654 0.06 13.1 2.9 1 2 0.86 9.6e+02 -0.6 0.4 119 159 32 72 17 78 0.67 HD containing hydrolase-like enzyme HD_2 PF12917.7 182 CP013117_00021 - 654 0.06 13.1 2.9 2 2 6.7e-05 0.076 12.8 0.1 89 167 286 369 264 379 0.73 HD containing hydrolase-like enzyme HAUS-augmin3 PF14932.6 260 CP013117_00021 - 654 0.064 12.8 8.5 1 3 0.023 25 4.3 0.1 52 97 13 58 10 74 0.85 HAUS augmin-like complex subunit 3 HAUS-augmin3 PF14932.6 260 CP013117_00021 - 654 0.064 12.8 8.5 2 3 0.00047 0.53 9.8 2.4 127 239 252 371 232 382 0.81 HAUS augmin-like complex subunit 3 HAUS-augmin3 PF14932.6 260 CP013117_00021 - 654 0.064 12.8 8.5 3 3 2 2.2e+03 -2.1 0.0 203 245 549 596 527 609 0.52 HAUS augmin-like complex subunit 3 DUF16 PF01519.16 104 CP013117_00021 - 654 0.086 13.3 3.1 1 3 0.00095 1.1 9.8 1.4 23 77 15 71 12 120 0.75 Protein of unknown function DUF16 DUF16 PF01519.16 104 CP013117_00021 - 654 0.086 13.3 3.1 2 3 2 2.3e+03 -0.9 0.0 35 73 95 133 89 151 0.67 Protein of unknown function DUF16 DUF16 PF01519.16 104 CP013117_00021 - 654 0.086 13.3 3.1 3 3 0.72 8e+02 0.6 0.0 50 85 325 361 278 398 0.58 Protein of unknown function DUF16 DUF3847 PF12958.7 81 CP013117_00021 - 654 0.11 12.6 4.4 1 4 1.7 1.9e+03 -1.0 0.1 4 32 29 57 26 62 0.78 Protein of unknown function (DUF3847) DUF3847 PF12958.7 81 CP013117_00021 - 654 0.11 12.6 4.4 2 4 0.0013 1.4 9.1 0.0 46 73 291 318 289 329 0.91 Protein of unknown function (DUF3847) DUF3847 PF12958.7 81 CP013117_00021 - 654 0.11 12.6 4.4 3 4 4.7 5.3e+03 -2.4 0.0 6 33 329 357 325 363 0.67 Protein of unknown function (DUF3847) DUF3847 PF12958.7 81 CP013117_00021 - 654 0.11 12.6 4.4 4 4 0.15 1.7e+02 2.4 0.0 30 48 562 581 552 595 0.80 Protein of unknown function (DUF3847) APC1_C PF18122.1 167 CP013117_00021 - 654 0.12 12.3 0.1 1 1 0.00023 0.26 11.2 0.1 36 142 232 346 224 373 0.88 Anaphase-promoting complex sub unit 1 C-terminal domain BLOC1_2 PF10046.9 96 CP013117_00021 - 654 0.15 12.4 15.0 1 7 0.00013 0.15 12.4 0.3 36 79 17 60 12 75 0.84 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP013117_00021 - 654 0.15 12.4 15.0 2 7 0.63 7.1e+02 0.6 0.1 38 76 95 133 88 141 0.52 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP013117_00021 - 654 0.15 12.4 15.0 3 7 5.4 6e+03 -2.4 0.1 28 52 165 190 155 205 0.48 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP013117_00021 - 654 0.15 12.4 15.0 4 7 0.081 90 3.5 0.1 32 67 247 282 239 304 0.86 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP013117_00021 - 654 0.15 12.4 15.0 5 7 1.2 1.3e+03 -0.2 0.0 50 65 347 355 321 402 0.57 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP013117_00021 - 654 0.15 12.4 15.0 6 7 0.94 1.1e+03 0.0 0.0 56 76 526 546 521 548 0.84 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP013117_00021 - 654 0.15 12.4 15.0 7 7 6.9 7.8e+03 -2.7 0.1 23 37 635 649 625 650 0.79 Biogenesis of lysosome-related organelles complex-1 subunit 2 Baculo_PEP_C PF04513.12 140 CP013117_00021 - 654 0.61 10.1 19.4 1 4 0.48 5.3e+02 0.6 0.1 55 80 28 52 18 74 0.43 Baculovirus polyhedron envelope protein, PEP, C terminus Baculo_PEP_C PF04513.12 140 CP013117_00021 - 654 0.61 10.1 19.4 2 4 0.054 60 3.7 1.8 30 80 86 132 79 140 0.77 Baculovirus polyhedron envelope protein, PEP, C terminus Baculo_PEP_C PF04513.12 140 CP013117_00021 - 654 0.61 10.1 19.4 3 4 0.027 31 4.6 0.2 30 89 255 315 246 319 0.89 Baculovirus polyhedron envelope protein, PEP, C terminus Baculo_PEP_C PF04513.12 140 CP013117_00021 - 654 0.61 10.1 19.4 4 4 0.00067 0.75 9.8 1.3 45 117 345 417 308 445 0.61 Baculovirus polyhedron envelope protein, PEP, C terminus Fib_alpha PF08702.10 143 CP013117_00021 - 654 0.87 9.8 4.6 1 3 0.0099 11 6.2 1.0 32 118 36 124 18 134 0.74 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP013117_00021 - 654 0.87 9.8 4.6 2 3 0.18 2e+02 2.1 0.1 100 125 170 195 154 205 0.83 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP013117_00021 - 654 0.87 9.8 4.6 3 3 1.6 1.8e+03 -1.0 0.0 51 51 346 346 309 417 0.55 Fibrinogen alpha/beta chain family Spc7 PF08317.11 310 CP013117_00021 - 654 1.2 7.9 6.5 1 3 0.006 6.7 5.5 1.3 198 245 24 71 15 82 0.49 Spc7 kinetochore protein Spc7 PF08317.11 310 CP013117_00021 - 654 1.2 7.9 6.5 2 3 0.039 44 2.8 3.2 148 237 41 146 34 191 0.60 Spc7 kinetochore protein Spc7 PF08317.11 310 CP013117_00021 - 654 1.2 7.9 6.5 3 3 0.06 67 2.2 0.0 250 296 329 375 321 386 0.84 Spc7 kinetochore protein DUF4795 PF16043.5 204 CP013117_00021 - 654 1.3 8.5 10.7 1 3 0.00044 0.49 10.0 1.7 22 63 19 60 14 69 0.89 Domain of unknown function (DUF4795) DUF4795 PF16043.5 204 CP013117_00021 - 654 1.3 8.5 10.7 2 3 1.3 1.4e+03 -1.3 0.0 111 146 92 132 70 145 0.58 Domain of unknown function (DUF4795) DUF4795 PF16043.5 204 CP013117_00021 - 654 1.3 8.5 10.7 3 3 0.12 1.3e+02 2.0 0.5 84 119 308 343 252 389 0.50 Domain of unknown function (DUF4795) Sigma70_ner PF04546.13 204 CP013117_00021 - 654 2.2 8.1 7.5 1 4 0.025 29 4.5 1.8 70 116 23 69 18 75 0.92 Sigma-70, non-essential region Sigma70_ner PF04546.13 204 CP013117_00021 - 654 2.2 8.1 7.5 2 4 2.3 2.6e+03 -1.9 0.0 66 94 141 169 127 203 0.76 Sigma-70, non-essential region Sigma70_ner PF04546.13 204 CP013117_00021 - 654 2.2 8.1 7.5 3 4 0.027 30 4.4 0.0 61 148 331 420 321 423 0.90 Sigma-70, non-essential region Sigma70_ner PF04546.13 204 CP013117_00021 - 654 2.2 8.1 7.5 4 4 1.7 1.9e+03 -1.5 0.1 70 94 555 579 523 597 0.51 Sigma-70, non-essential region APG6_N PF17675.1 133 CP013117_00021 - 654 4.9 7.7 5.9 1 3 0.033 38 4.8 0.5 25 80 24 58 15 79 0.41 Apg6 coiled-coil region APG6_N PF17675.1 133 CP013117_00021 - 654 4.9 7.7 5.9 2 3 5.4 6e+03 -2.3 0.1 76 76 137 137 89 190 0.53 Apg6 coiled-coil region APG6_N PF17675.1 133 CP013117_00021 - 654 4.9 7.7 5.9 3 3 0.047 52 4.4 0.0 19 72 326 370 322 383 0.80 Apg6 coiled-coil region MgtE PF01769.16 124 CP013117_00022 - 76 0.065 13.6 4.9 1 1 1.2e-05 0.072 13.5 4.9 29 97 5 72 1 75 0.63 Divalent cation transporter DUF4234 PF14018.6 70 CP013117_00022 - 76 0.5 10.5 6.7 1 1 0.00019 1.1 9.4 6.7 10 65 24 74 16 76 0.87 Domain of unknown function (DUF4234) DUF2207 PF09972.9 492 CP013117_00022 - 76 5.5 5.6 8.9 1 1 0.001 6 5.5 8.9 369 430 11 72 1 75 0.59 Predicted membrane protein (DUF2207) Phage_TAC_7 PF10109.9 83 CP013117_00023 - 78 5.2e-05 23.3 0.0 1 1 3.5e-09 6.2e-05 23.0 0.0 16 79 11 68 8 71 0.86 Phage tail assembly chaperone proteins, E, or 41 or 14 Phage_tube PF04985.14 166 CP013117_00024 - 171 1e-29 103.4 0.0 1 1 6.3e-34 1.1e-29 103.2 0.0 1 165 6 169 6 170 0.96 Phage tail tube protein FII Phage_sheath_1C PF17482.2 104 CP013117_00025 - 396 0.0025 17.7 0.3 1 2 0.046 8.2e+02 0.0 0.0 74 101 23 60 6 63 0.77 Phage tail sheath C-terminal domain Phage_sheath_1C PF17482.2 104 CP013117_00025 - 396 0.0025 17.7 0.3 2 2 1.7e-06 0.031 14.3 0.2 4 88 285 366 282 379 0.73 Phage tail sheath C-terminal domain DUF1353 PF07087.11 91 CP013117_00027 - 123 5.8e-19 67.6 0.0 1 1 3.8e-23 6.9e-19 67.4 0.0 1 89 19 108 19 110 0.90 Protein of unknown function (DUF1353) DUF4376 PF14301.6 102 CP013117_00028 - 168 1.3e-10 41.6 0.0 1 1 2e-14 1.7e-10 41.1 0.0 2 100 60 159 59 161 0.96 Domain of unknown function (DUF4376) CENP-X PF09415.10 75 CP013117_00028 - 168 0.022 15.0 0.1 1 1 5.8e-06 0.052 13.9 0.1 13 58 114 158 108 167 0.80 CENP-S associating Centromere protein X DUF3751 PF12571.8 150 CP013117_00029 - 359 8e-38 129.9 0.0 1 1 2.9e-41 1.7e-37 128.8 0.0 3 150 4 148 1 148 0.97 Phage tail-collar fibre protein BppL_N PF18338.1 25 CP013117_00029 - 359 0.0018 18.0 0.4 1 1 7e-07 0.0042 16.8 0.4 6 21 196 211 195 215 0.94 Lower baseplate protein N-terminal domain Peptidase_M28 PF04389.17 198 CP013117_00029 - 359 0.062 13.0 0.0 1 1 1.6e-05 0.097 12.4 0.0 9 149 65 209 57 231 0.73 Peptidase family M28 Tail_P2_I PF09684.10 136 CP013117_00030 - 206 2.5e-23 82.5 0.0 1 1 6.1e-27 3.6e-23 82.0 0.0 10 136 14 139 6 139 0.86 Phage tail protein (Tail_P2_I) Acp26Ab PF05777.12 90 CP013117_00030 - 206 0.08 13.6 0.0 1 1 2.2e-05 0.13 12.9 0.0 26 82 112 169 89 176 0.81 Drosophila accessory gland-specific peptide 26Ab (Acp26Ab) SIN1_PH PF16979.5 110 CP013117_00030 - 206 0.11 12.8 0.0 1 1 3.7e-05 0.22 11.8 0.0 22 67 160 199 145 206 0.78 SAPK-interacting protein 1 (Sin1), Pleckstrin-homology Baseplate_J PF04865.14 255 CP013117_00031 - 388 5.1e-24 84.8 0.0 1 1 5.1e-28 9.1e-24 84.0 0.0 3 234 91 313 89 320 0.83 Baseplate J-like protein GPW_gp25 PF04965.14 95 CP013117_00032 - 96 1.3e-13 50.6 0.0 1 1 8.4e-18 1.5e-13 50.3 0.0 6 85 6 81 2 92 0.90 Gene 25-like lysozyme Phage_base_V PF04717.12 112 CP013117_00033 - 210 1.1e-18 67.2 0.0 1 1 2e-22 1.8e-18 66.5 0.0 13 112 4 102 1 102 0.92 Type VI secretion system, phage-baseplate injector WTF PF03303.13 239 CP013117_00033 - 210 0.14 11.9 0.5 1 1 2.1e-05 0.19 11.4 0.5 19 76 80 134 62 146 0.62 WTF protein DUF1804 PF08822.11 164 CP013117_00034 - 154 1e-09 38.6 0.2 1 1 2e-13 1.2e-09 38.4 0.2 7 142 3 134 1 143 0.92 Protein of unknown function (DUF1804) HTH_29 PF13551.6 63 CP013117_00034 - 154 0.0057 16.6 0.0 1 2 1.3e-05 0.079 13.0 0.0 10 34 13 36 10 55 0.91 Winged helix-turn helix HTH_29 PF13551.6 63 CP013117_00034 - 154 0.0057 16.6 0.0 2 2 0.058 3.5e+02 1.3 0.0 19 38 114 133 104 138 0.85 Winged helix-turn helix HTH_7 PF02796.15 45 CP013117_00034 - 154 0.0077 16.3 0.0 1 1 2.9e-06 0.018 15.1 0.0 12 39 5 32 1 38 0.85 Helix-turn-helix domain of resolvase Mu-like_Pro PF10123.9 325 CP013117_00035 - 346 1.7e-25 90.2 1.1 1 1 4.3e-28 2.3e-25 89.8 1.1 1 319 17 343 17 346 0.67 Mu-like prophage I protein DUF812 PF05667.11 595 CP013117_00035 - 346 0.00088 18.3 14.1 1 1 2.2e-06 0.0012 17.8 14.1 271 403 130 272 103 292 0.70 Protein of unknown function (DUF812) Spc7 PF08317.11 310 CP013117_00035 - 346 0.0032 16.4 15.8 1 1 9.5e-06 0.0052 15.7 15.8 184 278 183 278 175 336 0.75 Spc7 kinetochore protein HALZ PF02183.18 43 CP013117_00035 - 346 0.0036 17.5 3.9 1 2 7.6 4.2e+03 -1.9 1.9 33 40 198 205 183 209 0.57 Homeobox associated leucine zipper HALZ PF02183.18 43 CP013117_00035 - 346 0.0036 17.5 3.9 2 2 6.5e-06 0.0036 17.5 3.9 19 42 233 256 232 257 0.92 Homeobox associated leucine zipper Tropomyosin_1 PF12718.7 143 CP013117_00035 - 346 0.0063 16.7 26.1 1 1 1.2e-05 0.0063 16.7 26.1 14 109 174 269 168 297 0.94 Tropomyosin like Alpha-2-MRAP_C PF06401.11 212 CP013117_00035 - 346 0.026 14.5 13.1 1 2 2.5e-05 0.014 15.4 10.4 47 170 129 269 121 284 0.74 Alpha-2-macroglobulin RAP, C-terminal domain Alpha-2-MRAP_C PF06401.11 212 CP013117_00035 - 346 0.026 14.5 13.1 2 2 3.7 2e+03 -1.5 0.0 140 152 326 338 311 341 0.78 Alpha-2-macroglobulin RAP, C-terminal domain HemX PF04375.14 338 CP013117_00035 - 346 0.055 12.7 10.2 1 1 0.00031 0.17 11.2 10.7 26 104 186 264 179 273 0.86 HemX, putative uroporphyrinogen-III C-methyltransferase FlaC_arch PF05377.11 55 CP013117_00035 - 346 0.064 13.6 0.6 1 2 0.16 88 3.6 5.0 6 33 194 221 185 228 0.63 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 CP013117_00035 - 346 0.064 13.6 0.6 2 2 0.00012 0.064 13.6 0.6 11 37 230 256 227 263 0.88 Flagella accessory protein C (FlaC) UPF0242 PF06785.11 193 CP013117_00035 - 346 0.098 12.7 16.6 1 1 0.00033 0.18 11.9 16.6 59 158 181 293 174 313 0.74 Uncharacterised protein family (UPF0242) N-terminus Atg14 PF10186.9 319 CP013117_00035 - 346 0.1 11.7 9.9 1 1 0.00027 0.15 11.2 9.9 37 129 188 274 128 332 0.66 Vacuolar sorting 38 and autophagy-related subunit 14 Phage_GPO PF05929.11 272 CP013117_00035 - 346 0.11 12.1 8.3 1 1 0.00035 0.19 11.3 8.3 182 254 183 262 133 272 0.67 Phage capsid scaffolding protein (GPO) serine peptidase Golgin_A5 PF09787.9 306 CP013117_00035 - 346 0.13 11.7 12.9 1 1 0.00037 0.2 11.1 12.9 70 152 182 264 128 338 0.76 Golgin subfamily A member 5 FlgN PF05130.12 146 CP013117_00035 - 346 0.15 12.6 15.7 1 1 0.00056 0.31 11.6 15.7 25 109 185 265 182 296 0.88 FlgN protein TPR_MLP1_2 PF07926.12 129 CP013117_00035 - 346 0.15 12.2 25.0 1 1 0.0036 1.9 8.5 25.0 11 98 187 274 178 281 0.83 TPR/MLP1/MLP2-like protein Fib_alpha PF08702.10 143 CP013117_00035 - 346 0.21 11.8 7.5 1 1 0.00086 0.47 10.6 7.5 29 102 189 261 182 283 0.83 Fibrinogen alpha/beta chain family PCRF PF03462.18 193 CP013117_00035 - 346 0.33 10.8 11.2 1 1 0.0014 0.75 9.6 11.2 12 95 185 265 173 271 0.62 PCRF domain DUF5320 PF17253.2 99 CP013117_00035 - 346 0.35 12.0 6.6 1 2 0.032 17 6.5 0.9 56 98 180 220 143 221 0.67 Family of unknown function (DUF5320) DUF5320 PF17253.2 99 CP013117_00035 - 346 0.35 12.0 6.6 2 2 0.013 7.3 7.7 0.6 68 98 228 258 224 259 0.89 Family of unknown function (DUF5320) DUF3578 PF12102.8 183 CP013117_00035 - 346 0.77 9.3 6.4 1 2 1.3 6.8e+02 -0.3 0.4 101 124 190 214 179 232 0.61 Domain of unknown function (DUF3578) DUF3578 PF12102.8 183 CP013117_00035 - 346 0.77 9.3 6.4 2 2 0.00022 0.12 12.0 0.9 105 160 239 293 224 308 0.85 Domain of unknown function (DUF3578) Uso1_p115_C PF04871.13 126 CP013117_00035 - 346 0.81 10.1 23.3 1 2 1.3 6.8e+02 0.6 10.4 38 83 181 222 120 223 0.55 Uso1 / p115 like vesicle tethering protein, C terminal region Uso1_p115_C PF04871.13 126 CP013117_00035 - 346 0.81 10.1 23.3 2 2 0.0009 0.49 10.8 20.6 7 85 194 278 184 280 0.77 Uso1 / p115 like vesicle tethering protein, C terminal region Fzo_mitofusin PF04799.13 161 CP013117_00035 - 346 1.2 8.6 4.4 1 1 0.0026 1.4 8.4 3.4 102 156 199 253 181 257 0.89 fzo-like conserved region DUF2203 PF09969.9 122 CP013117_00035 - 346 1.6 9.4 5.7 1 1 0.009 4.9 7.9 5.7 12 76 197 270 173 281 0.64 Uncharacterized conserved protein (DUF2203) Snapin_Pallidin PF14712.6 90 CP013117_00035 - 346 1.8 9.0 12.1 1 2 1.8 9.7e+02 0.3 1.6 30 46 201 217 183 225 0.58 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 CP013117_00035 - 346 1.8 9.0 12.1 2 2 0.00019 0.1 13.0 3.2 19 68 232 278 229 301 0.86 Snapin/Pallidin T3SS_basalb_I PF17001.5 96 CP013117_00035 - 346 2.9 8.6 9.2 1 2 0.002 1.1 9.9 2.9 11 53 180 222 174 233 0.86 Type III secretion basal body protein I, YscI, HrpB, PscI T3SS_basalb_I PF17001.5 96 CP013117_00035 - 346 2.9 8.6 9.2 2 2 0.67 3.6e+02 1.8 0.3 28 56 235 263 225 281 0.59 Type III secretion basal body protein I, YscI, HrpB, PscI ZapB PF06005.12 71 CP013117_00035 - 346 3.2 8.3 27.1 1 2 0.3 1.6e+02 2.8 7.5 25 50 195 220 181 227 0.72 Cell division protein ZapB ZapB PF06005.12 71 CP013117_00035 - 346 3.2 8.3 27.1 2 2 0.0017 0.9 10.0 11.6 26 67 234 280 232 281 0.68 Cell division protein ZapB Cwf_Cwc_15 PF04889.12 247 CP013117_00035 - 346 3.4 7.3 16.3 1 1 0.0087 4.7 6.9 16.3 81 210 154 302 122 329 0.59 Cwf15/Cwc15 cell cycle control protein TMPIT PF07851.13 324 CP013117_00035 - 346 4.4 6.5 8.7 1 1 0.012 6.8 5.8 8.7 2 73 195 270 174 337 0.59 TMPIT-like protein MutS_IV PF05190.18 92 CP013117_00035 - 346 4.6 7.7 13.0 1 3 0.19 1e+02 3.3 1.3 4 30 195 221 193 226 0.89 MutS family domain IV MutS_IV PF05190.18 92 CP013117_00035 - 346 4.6 7.7 13.0 2 3 0.0086 4.7 7.6 2.2 3 32 232 261 230 275 0.83 MutS family domain IV MutS_IV PF05190.18 92 CP013117_00035 - 346 4.6 7.7 13.0 3 3 0.59 3.2e+02 1.8 0.0 12 34 321 343 310 346 0.82 MutS family domain IV LMBR1 PF04791.16 510 CP013117_00035 - 346 5.4 5.8 6.0 1 1 0.012 6.4 5.6 6.0 209 296 187 272 113 333 0.62 LMBR1-like membrane protein DivIC PF04977.15 80 CP013117_00035 - 346 6 6.7 14.6 1 2 0.75 4.1e+02 0.8 3.3 44 61 194 211 181 225 0.52 Septum formation initiator DivIC PF04977.15 80 CP013117_00035 - 346 6 6.7 14.6 2 2 0.00074 0.4 10.5 3.6 32 51 234 253 229 277 0.66 Septum formation initiator 5_nucleotid PF05761.14 458 CP013117_00035 - 346 6.5 5.5 8.6 1 1 0.018 9.6 5.0 8.6 336 404 188 262 181 273 0.76 5' nucleotidase family Csm1_N PF18504.1 70 CP013117_00035 - 346 6.6 7.2 20.7 1 2 0.81 4.4e+02 1.3 8.2 29 61 190 222 183 229 0.59 Csm1 N-terminal domain Csm1_N PF18504.1 70 CP013117_00035 - 346 6.6 7.2 20.7 2 2 0.00077 0.42 11.0 4.3 34 67 233 266 224 270 0.86 Csm1 N-terminal domain DUF2508 PF10704.9 71 CP013117_00035 - 346 7.5 6.8 12.7 1 2 0.074 40 4.5 2.1 8 45 186 224 179 227 0.77 Protein of unknown function (DUF2508) DUF2508 PF10704.9 71 CP013117_00035 - 346 7.5 6.8 12.7 2 2 0.023 12 6.1 3.1 12 37 239 265 232 278 0.78 Protein of unknown function (DUF2508) HalX PF08663.10 68 CP013117_00035 - 346 9.3 6.7 17.5 1 2 0.23 1.2e+02 3.1 7.9 20 63 183 223 180 229 0.79 HalX domain HalX PF08663.10 68 CP013117_00035 - 346 9.3 6.7 17.5 2 2 0.0049 2.7 8.4 2.4 34 60 239 265 227 270 0.76 HalX domain Mu-like_gpT PF10124.9 289 CP013117_00036 - 295 3.4e-75 253.1 2.8 1 3 5.9e-42 1e-37 130.0 0.2 2 148 12 151 11 155 0.95 Mu-like prophage major head subunit gpT Mu-like_gpT PF10124.9 289 CP013117_00036 - 295 3.4e-75 253.1 2.8 2 3 8.7e-17 1.6e-12 47.4 0.1 218 288 154 223 151 224 0.96 Mu-like prophage major head subunit gpT Mu-like_gpT PF10124.9 289 CP013117_00036 - 295 3.4e-75 253.1 2.8 3 3 2.1e-25 3.8e-21 75.7 0.0 152 217 226 291 222 295 0.95 Mu-like prophage major head subunit gpT SplA PF11132.8 74 CP013117_00037 - 89 0.0073 16.1 0.7 1 2 6.2e-05 0.37 10.6 0.2 30 62 15 46 5 52 0.75 Transcriptional regulator protein (SplA) SplA PF11132.8 74 CP013117_00037 - 89 0.0073 16.1 0.7 2 2 0.0045 27 4.6 0.0 38 56 51 69 46 81 0.84 Transcriptional regulator protein (SplA) tRNA-synt_1g PF09334.11 391 CP013117_00037 - 89 0.065 12.0 4.2 1 1 1.2e-05 0.073 11.8 4.2 151 220 9 79 3 84 0.88 tRNA synthetases class I (M) DNAP_B_exo_N PF08452.10 22 CP013117_00037 - 89 1.6 8.2 6.8 1 3 0.0031 19 4.8 0.0 14 21 24 31 21 32 0.89 DNA polymerase family B exonuclease domain, N-terminal DNAP_B_exo_N PF08452.10 22 CP013117_00037 - 89 1.6 8.2 6.8 2 3 0.013 77 2.8 0.3 15 21 39 45 36 46 0.89 DNA polymerase family B exonuclease domain, N-terminal DNAP_B_exo_N PF08452.10 22 CP013117_00037 - 89 1.6 8.2 6.8 3 3 0.013 77 2.8 0.3 15 21 53 59 50 60 0.89 DNA polymerase family B exonuclease domain, N-terminal Peptidase_M15_3 PF08291.11 111 CP013117_00040 - 129 1.4e-23 83.1 0.0 1 1 2.8e-27 1.6e-23 82.9 0.0 1 111 5 118 5 118 0.81 Peptidase M15 Peptidase_M15_2 PF05951.13 153 CP013117_00040 - 129 4e-06 26.6 0.0 1 1 9e-10 5.4e-06 26.1 0.0 56 147 29 119 22 126 0.76 Bacterial protein of unknown function (DUF882) Extensin-like_C PF06904.12 177 CP013117_00040 - 129 0.07 13.2 0.0 1 1 1.6e-05 0.094 12.7 0.0 83 114 48 82 15 98 0.83 Extensin-like protein C-terminus Phage_holin_3_3 PF16083.5 78 CP013117_00044 - 104 3.3e-10 39.9 3.8 1 1 8.9e-14 4e-10 39.7 3.8 3 77 12 89 10 90 0.89 LydA holin phage, holin superfamily III Phage_holin_3_1 PF05106.12 99 CP013117_00044 - 104 0.0016 18.8 1.7 1 1 1.1e-06 0.0047 17.3 1.6 46 99 43 100 13 100 0.83 Phage holin family (Lysis protein S) DUF3397 PF11877.8 112 CP013117_00044 - 104 0.053 13.7 3.4 1 1 1.7e-05 0.076 13.2 3.4 59 111 10 62 3 63 0.90 Protein of unknown function (DUF3397) DUF3959 PF13105.6 240 CP013117_00044 - 104 0.11 12.0 1.9 1 1 2.8e-05 0.12 11.8 1.9 1 73 13 88 13 96 0.89 Protein of unknown function (DUF3959) ResIII PF04851.15 171 CP013117_00045 - 508 0.002 18.2 2.7 1 2 3.3e-07 0.0029 17.6 0.5 15 140 65 188 40 192 0.74 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP013117_00045 - 508 0.002 18.2 2.7 2 2 0.094 8.5e+02 -0.2 0.1 64 91 288 319 210 364 0.62 Type III restriction enzyme, res subunit Terminase_6C PF17289.2 155 CP013117_00045 - 508 0.064 13.4 0.0 1 1 0.00011 1 9.5 0.0 2 152 335 480 334 481 0.67 Terminase RNaseH-like domain DUF935 PF06074.12 520 CP013117_00046 - 460 2.8e-44 151.8 0.0 1 1 2e-47 1.8e-43 149.1 0.0 72 515 44 451 40 453 0.89 Protein of unknown function (DUF935) DUF2119 PF09892.9 188 CP013117_00046 - 460 0.072 12.5 0.6 1 1 1.9e-05 0.17 11.3 0.6 134 175 391 433 347 446 0.79 Uncharacterized protein conserved in archaea (DUF2119) Phage_Mu_F PF04233.14 112 CP013117_00047 - 377 1.6e-21 77.1 0.9 1 1 4.2e-25 3.8e-21 75.9 0.9 2 112 52 181 51 181 0.93 Phage Mu protein F like protein PBECR2 PF18810.1 119 CP013117_00047 - 377 5.8e-14 52.4 0.5 1 1 1.5e-17 1.4e-13 51.2 0.5 11 119 255 375 245 375 0.84 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 Phage_tail_S PF05069.13 148 CP013117_00048 - 159 1.6e-14 54.0 0.1 1 1 2.1e-18 1.9e-14 53.8 0.1 4 109 7 119 4 158 0.74 Phage virion morphogenesis family BORCS7 PF16088.5 103 CP013117_00048 - 159 0.014 15.6 1.3 1 1 3.3e-06 0.03 14.6 1.0 9 57 33 80 29 89 0.88 BLOC-1-related complex sub-unit 7 DUF2387 PF09526.10 75 CP013117_00049 - 63 0.00073 19.6 0.3 1 1 3.8e-07 0.00076 19.6 0.3 10 39 2 34 1 55 0.85 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.7 46 CP013117_00049 - 63 0.0045 16.9 1.5 1 1 3.2e-06 0.0063 16.5 1.5 20 46 2 34 1 34 0.85 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 62 CP013117_00049 - 63 0.07 13.5 0.1 1 1 4.3e-05 0.085 13.3 0.1 6 37 3 43 2 56 0.78 Restriction alleviation protein Lar eIF-5_eIF-2B PF01873.17 117 CP013117_00049 - 63 0.11 12.4 2.0 1 1 7.7e-05 0.15 11.9 2.0 89 116 2 33 1 34 0.85 Domain found in IF2B/IF5 TFIIS_C PF01096.18 39 CP013117_00049 - 63 0.13 12.2 5.2 1 1 0.00043 0.85 9.5 5.2 2 38 2 35 1 36 0.84 Transcription factor S-II (TFIIS) DUF1660 PF07874.11 64 CP013117_00049 - 63 0.15 12.5 2.1 1 2 0.00037 0.74 10.3 0.3 24 43 2 22 1 26 0.84 Prophage protein (DUF1660) DUF1660 PF07874.11 64 CP013117_00049 - 63 0.15 12.5 2.1 2 2 0.057 1.1e+02 3.3 0.2 21 44 24 56 18 62 0.48 Prophage protein (DUF1660) zinc_ribbon_2 PF13240.6 23 CP013117_00049 - 63 0.24 11.2 2.6 1 2 0.025 50 3.8 0.3 2 8 3 9 2 11 0.74 zinc-ribbon domain zinc_ribbon_2 PF13240.6 23 CP013117_00049 - 63 0.24 11.2 2.6 2 2 0.0017 3.3 7.5 0.1 11 21 21 33 17 35 0.78 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 30 CP013117_00049 - 63 0.55 10.2 0.2 1 2 0.00028 0.55 10.2 0.2 20 28 1 9 1 9 0.95 PhnA Zinc-Ribbon PhnA_Zn_Ribbon PF08274.12 30 CP013117_00049 - 63 0.55 10.2 0.2 2 2 0.67 1.3e+03 -0.6 0.2 5 9 28 32 27 33 0.73 PhnA Zinc-Ribbon UPF0547 PF10571.9 26 CP013117_00049 - 63 1.1 9.4 4.2 1 2 0.024 47 4.2 0.6 3 8 3 8 2 9 0.83 Uncharacterised protein family UPF0547 UPF0547 PF10571.9 26 CP013117_00049 - 63 1.1 9.4 4.2 2 2 0.0038 7.6 6.7 0.2 15 24 26 35 25 37 0.85 Uncharacterised protein family UPF0547 YopX PF09643.10 131 CP013117_00052 - 128 1.3e-18 67.3 5.8 1 1 1.5e-22 2.7e-18 66.3 5.8 2 131 8 127 7 127 0.84 YopX protein MgtE_N PF03448.17 102 CP013117_00053 - 90 5.1e-05 23.8 1.7 1 1 8.3e-08 0.00075 20.1 1.6 24 78 14 73 12 76 0.85 MgtE intracellular N domain CRISPR_Cas9_WED PF18061.1 137 CP013117_00053 - 90 0.064 13.3 0.2 1 1 9.7e-06 0.087 12.9 0.2 24 72 12 61 5 87 0.81 CRISPR-Cas9 WED domain RNA_capsid PF03035.14 226 CP013117_00054 - 70 0.034 14.2 0.3 1 1 1.9e-06 0.034 14.2 0.3 32 72 28 69 5 70 0.80 Calicivirus putative RNA polymerase/capsid protein Phage_Mu_Gam PF07352.12 155 CP013117_00055 - 161 1.2e-33 116.2 4.5 1 1 2.3e-37 1.4e-33 116.0 4.5 2 155 7 152 6 152 0.98 Bacteriophage Mu Gam like protein NPM1-C PF16276.5 49 CP013117_00055 - 161 0.054 13.5 0.1 1 2 2.7e-05 0.16 12.0 0.0 7 29 83 105 81 107 0.87 Nucleophosmin C-terminal domain NPM1-C PF16276.5 49 CP013117_00055 - 161 0.054 13.5 0.1 2 2 1.4 8.5e+03 -3.2 0.0 28 34 144 150 141 155 0.69 Nucleophosmin C-terminal domain YvrJ PF12841.7 36 CP013117_00055 - 161 0.38 10.3 2.6 1 3 0.36 2.2e+03 -1.7 0.0 21 33 14 26 14 28 0.76 YvrJ protein family YvrJ PF12841.7 36 CP013117_00055 - 161 0.38 10.3 2.6 2 3 0.0065 39 3.9 0.1 18 31 95 108 93 109 0.82 YvrJ protein family YvrJ PF12841.7 36 CP013117_00055 - 161 0.38 10.3 2.6 3 3 0.0028 17 5.1 0.1 18 26 149 157 148 159 0.91 YvrJ protein family DUF4406 PF14359.6 91 CP013117_00056 - 113 0.0002 21.8 0.0 1 1 3.7e-08 0.00033 21.1 0.0 28 87 40 104 27 107 0.88 Domain of unknown function (DUF4406) DUF1937 PF09152.10 116 CP013117_00056 - 113 0.0077 17.0 0.0 1 1 1.8e-06 0.016 16.0 0.0 3 48 4 49 2 109 0.71 Domain of unknown function (DUF1937) PVL_ORF50 PF07768.11 116 CP013117_00057 - 143 7.3e-05 23.1 0.5 1 1 5.6e-09 0.0001 22.6 0.4 4 66 29 91 26 123 0.82 PVL ORF-50-like family Sigma70_r4 PF04545.16 50 CP013117_00059 - 63 2.4e-08 33.4 0.1 1 1 1.2e-11 3e-08 33.0 0.1 21 49 1 29 1 30 0.96 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 54 CP013117_00059 - 63 0.00011 21.8 0.1 1 1 5.8e-08 0.00015 21.4 0.1 27 54 1 28 1 28 0.98 Sigma-70, region 4 Sigma70_r3 PF04539.16 78 CP013117_00059 - 63 0.0061 16.6 0.0 1 1 3.7e-06 0.0095 16.0 0.0 24 44 4 24 2 30 0.89 Sigma-70 region 3 HTH_Tnp_ISL3 PF13542.6 52 CP013117_00059 - 63 0.0062 15.9 0.0 1 1 3e-06 0.0077 15.6 0.0 27 50 1 23 1 25 0.91 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 48 CP013117_00059 - 63 0.014 14.9 0.0 1 1 8.4e-06 0.021 14.3 0.0 18 37 1 20 1 28 0.89 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 42 CP013117_00059 - 63 0.014 15.2 0.0 1 1 8.2e-06 0.021 14.6 0.0 18 35 1 18 1 19 0.94 AsnC-type helix-turn-helix domain GerE PF00196.19 57 CP013117_00059 - 63 0.022 14.3 0.1 1 1 1.3e-05 0.033 13.7 0.1 19 46 2 29 1 35 0.92 Bacterial regulatory proteins, luxR family AAA_22 PF13401.6 137 CP013117_00060 - 285 1.2e-19 71.0 0.1 1 1 5.3e-22 2.9e-19 69.7 0.1 4 135 91 204 88 206 0.95 AAA domain TniB PF05621.11 189 CP013117_00060 - 285 3e-09 36.6 0.8 1 1 2.9e-11 1.6e-08 34.2 0.8 36 169 93 206 79 225 0.83 Bacterial TniB protein AAA_30 PF13604.6 192 CP013117_00060 - 285 5.1e-09 36.1 0.0 1 1 1.7e-11 9.2e-09 35.3 0.0 12 123 87 198 82 200 0.73 AAA domain AAA_16 PF13191.6 170 CP013117_00060 - 285 1e-06 29.2 0.5 1 3 4.3 2.3e+03 -1.2 0.0 78 103 29 54 4 73 0.71 AAA ATPase domain AAA_16 PF13191.6 170 CP013117_00060 - 285 1e-06 29.2 0.5 2 3 4.4e-08 2.4e-05 24.8 0.1 23 130 91 190 72 197 0.57 AAA ATPase domain AAA_16 PF13191.6 170 CP013117_00060 - 285 1e-06 29.2 0.5 3 3 9 4.9e+03 -2.3 0.0 37 63 209 253 207 277 0.51 AAA ATPase domain AAA_7 PF12775.7 181 CP013117_00060 - 285 2.2e-05 24.0 0.0 1 1 6.2e-08 3.4e-05 23.4 0.0 10 66 69 125 61 148 0.80 P-loop containing dynein motor region ABC_tran PF00005.27 137 CP013117_00060 - 285 2.7e-05 24.7 0.4 1 2 3.5e-05 0.019 15.5 0.1 5 34 86 115 84 131 0.86 ABC transporter ABC_tran PF00005.27 137 CP013117_00060 - 285 2.7e-05 24.7 0.4 2 2 0.019 10 6.6 0.0 117 135 154 172 144 173 0.89 ABC transporter AAA_19 PF13245.6 146 CP013117_00060 - 285 6.3e-05 23.3 0.4 1 1 1.5e-06 0.00084 19.7 0.4 5 136 89 198 85 200 0.71 AAA domain Viral_helicase1 PF01443.18 234 CP013117_00060 - 285 0.00024 20.9 0.0 1 1 7.2e-07 0.00039 20.2 0.0 2 75 96 176 95 192 0.68 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 131 CP013117_00060 - 285 0.0006 19.8 0.1 1 1 2.2e-06 0.0012 18.9 0.1 2 100 92 199 91 234 0.68 AAA domain AAA PF00004.29 132 CP013117_00060 - 285 0.00092 19.6 0.3 1 1 4.2e-06 0.0023 18.4 0.1 2 70 96 175 95 189 0.70 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 197 CP013117_00060 - 285 0.0011 18.8 0.1 1 2 1.9e-05 0.01 15.6 0.0 5 33 95 124 91 182 0.77 AAA domain AAA_24 PF13479.6 197 CP013117_00060 - 285 0.0011 18.8 0.1 2 2 0.64 3.5e+02 0.8 0.0 78 107 218 246 214 261 0.73 AAA domain ATPase_2 PF01637.18 233 CP013117_00060 - 285 0.0014 18.6 3.0 1 2 2.9e-05 0.016 15.1 0.1 18 44 90 116 73 122 0.89 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 CP013117_00060 - 285 0.0014 18.6 3.0 2 2 0.14 77 3.1 0.4 93 130 139 175 121 192 0.77 ATPase domain predominantly from Archaea DUF2075 PF09848.9 363 CP013117_00060 - 285 0.0015 17.9 0.1 1 1 6.3e-06 0.0034 16.7 0.1 1 152 92 218 92 223 0.74 Uncharacterized conserved protein (DUF2075) Cys_Met_Meta_PP PF01053.20 382 CP013117_00060 - 285 0.0016 17.0 0.0 1 1 5.1e-06 0.0028 16.3 0.0 56 165 84 192 54 199 0.77 Cys/Met metabolism PLP-dependent enzyme Sigma54_activat PF00158.26 168 CP013117_00060 - 285 0.002 17.8 0.0 1 1 6.4e-06 0.0035 17.1 0.0 14 116 84 186 72 198 0.78 Sigma-54 interaction domain AAA_11 PF13086.6 261 CP013117_00060 - 285 0.0026 17.6 0.5 1 2 1.5e-05 0.008 16.0 0.1 10 79 85 144 79 166 0.75 AAA domain AAA_11 PF13086.6 261 CP013117_00060 - 285 0.0026 17.6 0.5 2 2 2.1 1.1e+03 -0.9 0.0 215 226 161 172 146 174 0.62 AAA domain IstB_IS21 PF01695.17 178 CP013117_00060 - 285 0.0027 17.5 0.2 1 1 1.7e-05 0.0092 15.7 0.1 39 123 84 178 68 186 0.72 IstB-like ATP binding protein AAA_5 PF07728.14 138 CP013117_00060 - 285 0.0037 17.3 0.1 1 1 1.5e-05 0.008 16.2 0.1 3 106 96 204 94 262 0.85 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 167 CP013117_00060 - 285 0.006 16.5 0.1 1 2 1.1 5.7e+02 0.3 0.0 95 137 2 43 1 46 0.78 RsgA GTPase RsgA_GTPase PF03193.16 167 CP013117_00060 - 285 0.006 16.5 0.1 2 2 9.3e-05 0.051 13.5 0.0 93 123 85 116 45 132 0.77 RsgA GTPase ATPase PF06745.13 231 CP013117_00060 - 285 0.0096 15.3 0.1 1 1 3.6e-05 0.019 14.3 0.1 16 42 89 115 80 172 0.89 KaiC T2SSE PF00437.20 273 CP013117_00060 - 285 0.0099 15.0 0.1 1 1 3e-05 0.017 14.2 0.1 119 164 82 123 50 171 0.79 Type II/IV secretion system protein TK PF00265.18 177 CP013117_00060 - 285 0.016 15.1 0.1 1 1 7.4e-05 0.04 13.8 0.0 3 117 94 204 92 220 0.76 Thymidine kinase Helicase_RecD PF05127.14 177 CP013117_00060 - 285 0.019 14.8 0.7 1 2 0.21 1.1e+02 2.5 0.1 58 124 62 127 23 134 0.61 Helicase Helicase_RecD PF05127.14 177 CP013117_00060 - 285 0.019 14.8 0.7 2 2 0.00022 0.12 12.2 0.2 3 113 98 188 96 200 0.63 Helicase PhoH PF02562.16 205 CP013117_00060 - 285 0.021 14.2 0.2 1 2 0.00011 0.057 12.9 0.1 12 35 85 108 79 113 0.90 PhoH-like protein PhoH PF02562.16 205 CP013117_00060 - 285 0.021 14.2 0.2 2 2 4.4 2.4e+03 -2.2 0.0 119 128 163 172 134 191 0.77 PhoH-like protein Rad17 PF03215.15 186 CP013117_00060 - 285 0.028 14.3 0.1 1 2 0.0032 1.8 8.5 0.0 43 69 90 116 76 125 0.79 Rad17 P-loop domain Rad17 PF03215.15 186 CP013117_00060 - 285 0.028 14.3 0.1 2 2 0.15 83 3.0 0.1 118 183 149 211 136 214 0.68 Rad17 P-loop domain HTH_19 PF12844.7 65 CP013117_00060 - 285 0.04 14.0 1.0 1 3 0.024 13 5.9 0.0 4 36 8 40 6 47 0.90 Helix-turn-helix domain HTH_19 PF12844.7 65 CP013117_00060 - 285 0.04 14.0 1.0 2 3 0.048 26 4.9 0.2 31 62 142 170 136 173 0.82 Helix-turn-helix domain HTH_19 PF12844.7 65 CP013117_00060 - 285 0.04 14.0 1.0 3 3 4.9 2.7e+03 -1.5 0.0 34 54 247 266 242 280 0.61 Helix-turn-helix domain PEPCK_ATP PF01293.20 465 CP013117_00060 - 285 0.045 12.4 0.0 1 1 0.00011 0.062 12.0 0.0 202 227 86 109 72 128 0.75 Phosphoenolpyruvate carboxykinase AAA_23 PF13476.6 200 CP013117_00060 - 285 0.051 14.1 1.5 1 3 6 3.3e+03 -1.6 0.1 156 174 53 71 30 93 0.59 AAA domain AAA_23 PF13476.6 200 CP013117_00060 - 285 0.051 14.1 1.5 2 3 9.4e-05 0.051 14.1 1.5 18 37 91 110 71 115 0.79 AAA domain AAA_23 PF13476.6 200 CP013117_00060 - 285 0.051 14.1 1.5 3 3 6 3.3e+03 -1.6 1.1 176 176 204 204 132 275 0.55 AAA domain AAA_29 PF13555.6 61 CP013117_00060 - 285 0.056 13.2 0.0 1 1 0.00021 0.11 12.2 0.0 19 39 89 109 81 113 0.86 P-loop containing region of AAA domain TFIIE_beta PF02186.15 68 CP013117_00060 - 285 0.085 13.1 0.1 1 1 0.00039 0.21 11.9 0.1 17 55 127 171 106 177 0.73 TFIIE beta subunit core domain NB-ARC PF00931.22 252 CP013117_00060 - 285 0.097 11.8 0.4 1 1 0.0008 0.43 9.7 0.4 21 43 93 115 80 172 0.72 NB-ARC domain RNA_helicase PF00910.22 107 CP013117_00060 - 285 0.11 13.0 0.2 1 1 0.00073 0.4 11.1 0.0 2 26 96 120 95 174 0.86 RNA helicase AAA_25 PF13481.6 194 CP013117_00060 - 285 0.18 11.4 0.0 1 2 0.0019 1 8.9 0.0 26 49 85 108 74 112 0.87 AAA domain AAA_25 PF13481.6 194 CP013117_00060 - 285 0.18 11.4 0.0 2 2 2 1.1e+03 -1.0 0.0 146 165 132 151 121 166 0.67 AAA domain rve PF00665.26 119 CP013117_00061 - 704 2.4e-11 43.8 0.0 1 1 8.5e-15 5.1e-11 42.8 0.0 22 117 344 441 315 443 0.86 Integrase core domain Mu-transpos_C PF09299.11 61 CP013117_00061 - 704 9.5e-05 22.3 0.0 1 1 3.7e-08 0.00022 21.1 0.0 9 60 542 591 539 592 0.95 Mu transposase, C-terminal CSRNP_N PF16019.5 219 CP013117_00061 - 704 0.33 10.8 4.2 1 2 0.00036 2.1 8.2 0.9 14 132 41 153 28 165 0.68 Cysteine/serine-rich nuclear protein N-terminus CSRNP_N PF16019.5 219 CP013117_00061 - 704 0.33 10.8 4.2 2 2 0.011 67 3.3 0.1 12 103 579 666 574 690 0.54 Cysteine/serine-rich nuclear protein N-terminus HTH_3 PF01381.22 55 CP013117_00064 - 267 3.6e-12 46.1 0.2 1 1 5.7e-15 9.2e-12 44.8 0.2 1 55 7 61 7 61 0.97 Helix-turn-helix Peptidase_S24 PF00717.23 70 CP013117_00064 - 267 2.8e-11 43.2 0.0 1 2 2.2 3.6e+03 -2.0 0.0 11 24 62 75 61 94 0.73 Peptidase S24-like Peptidase_S24 PF00717.23 70 CP013117_00064 - 267 2.8e-11 43.2 0.0 2 2 5.7e-14 9.2e-11 41.5 0.0 3 69 187 249 186 250 0.92 Peptidase S24-like HTH_19 PF12844.7 65 CP013117_00064 - 267 6.9e-10 38.8 0.2 1 1 9.3e-13 1.5e-09 37.7 0.2 1 62 4 64 4 67 0.96 Helix-turn-helix domain HTH_31 PF13560.6 64 CP013117_00064 - 267 1.4e-06 28.6 0.0 1 2 2.3e-09 3.8e-06 27.2 0.0 2 54 3 54 2 59 0.88 Helix-turn-helix domain HTH_31 PF13560.6 64 CP013117_00064 - 267 1.4e-06 28.6 0.0 2 2 3.5 5.7e+03 -2.3 0.0 22 32 160 170 156 172 0.72 Helix-turn-helix domain HTH_25 PF13413.6 62 CP013117_00064 - 267 3.6e-05 23.5 0.2 1 2 6.9e-08 0.00011 22.0 0.1 3 36 8 41 6 43 0.92 Helix-turn-helix domain HTH_25 PF13413.6 62 CP013117_00064 - 267 3.6e-05 23.5 0.2 2 2 2.8 4.6e+03 -2.4 0.0 16 25 50 59 46 60 0.59 Helix-turn-helix domain HTH_23 PF13384.6 50 CP013117_00064 - 267 0.009 15.8 0.1 1 2 2e-05 0.032 14.0 0.0 11 37 10 35 4 38 0.82 Homeodomain-like domain HTH_23 PF13384.6 50 CP013117_00064 - 267 0.009 15.8 0.1 2 2 6.8 1.1e+04 -3.6 0.0 22 29 49 56 47 57 0.79 Homeodomain-like domain HTH_8 PF02954.19 42 CP013117_00064 - 267 0.047 13.5 0.1 1 1 6.6e-05 0.11 12.3 0.1 15 36 12 33 6 34 0.90 Bacterial regulatory protein, Fis family Sigma70_r4_2 PF08281.12 54 CP013117_00064 - 267 0.055 13.1 0.3 1 2 0.0001 0.17 11.6 0.0 21 46 10 35 5 35 0.91 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 54 CP013117_00064 - 267 0.055 13.1 0.3 2 2 3.5 5.7e+03 -2.9 0.0 36 43 103 110 103 112 0.86 Sigma-70, region 4 YdaS_antitoxin PF15943.5 65 CP013117_00064 - 267 0.13 12.2 0.0 1 1 0.00015 0.25 11.2 0.0 10 46 17 53 9 58 0.83 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT MerR PF00376.23 38 CP013117_00064 - 267 0.14 12.0 0.0 1 2 0.00048 0.78 9.6 0.0 4 20 20 36 19 36 0.94 MerR family regulatory protein MerR PF00376.23 38 CP013117_00064 - 267 0.14 12.0 0.0 2 2 1.9 3.1e+03 -2.0 0.0 7 17 160 170 159 170 0.88 MerR family regulatory protein HTH_24 PF13412.6 48 CP013117_00064 - 267 0.15 11.7 0.9 1 2 0.0004 0.66 9.6 0.1 10 34 8 32 7 35 0.86 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP013117_00064 - 267 0.15 11.7 0.9 2 2 0.64 1e+03 -0.7 0.1 27 36 103 112 103 115 0.85 Winged helix-turn-helix DNA-binding Relaxase PF03432.14 242 CP013117_00065 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP013117_00065 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 CP013117_00066 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP013117_00066 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP013117_00066 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP013117_00066 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP013117_00066 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP013117_00066 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP013117_00066 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 CP013117_00066 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP013117_00066 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 CP013117_00066 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP013117_00066 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 CP013117_00067 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 CP013117_00067 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP013117_00067 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 CP013117_00067 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 CP013117_00067 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 CP013117_00070 - 409 1.6e-08 34.8 0.2 1 2 1.1 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 CP013117_00070 - 409 1.6e-08 34.8 0.2 2 2 7.1e-12 4.3e-08 33.4 0.0 3 94 271 376 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 CP013117_00070 - 409 0.016 15.4 0.1 1 2 0.018 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 CP013117_00070 - 409 0.016 15.4 0.1 2 2 0.00022 1.3 9.3 0.0 15 83 283 359 277 369 0.80 Retrotransposon gag protein DUF2315 PF10231.9 123 CP013117_00070 - 409 0.017 15.2 6.4 1 3 0.00021 1.2 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP013117_00070 - 409 0.017 15.2 6.4 2 3 0.0012 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP013117_00070 - 409 0.017 15.2 6.4 3 3 0.93 5.5e+03 -2.6 0.0 21 91 356 374 339 385 0.55 Apoptogenic protein 1 DUF4223 PF13978.6 54 CP013117_00071 - 92 0.0072 16.3 0.0 1 1 1.5e-06 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) STI1 PF17830.1 55 CP013117_00071 - 92 0.15 12.0 0.0 1 1 4e-05 0.36 10.8 0.0 9 39 22 56 16 59 0.84 STI1 domain TOPRIM_C PF16898.5 128 CP013117_00072 - 69 0.029 14.7 1.5 1 1 1.7e-06 0.031 14.6 1.5 63 124 8 68 2 69 0.88 C-terminal associated domain of TOPRIM Pkinase PF00069.25 264 CP013117_00073 - 336 5.1e-29 101.4 6.3 1 1 4.2e-32 9.5e-29 100.6 6.3 5 153 156 304 153 315 0.90 Protein kinase domain Pkinase_Tyr PF07714.17 259 CP013117_00073 - 336 2e-26 92.8 0.9 1 1 1.4e-29 3.2e-26 92.2 0.9 6 158 157 303 154 315 0.88 Protein tyrosine kinase Pkinase_fungal PF17667.1 408 CP013117_00073 - 336 4e-06 25.9 0.8 1 1 2.6e-09 5.9e-06 25.3 0.8 314 364 254 301 238 318 0.78 Fungal protein kinase DUF2841 PF11001.8 124 CP013117_00073 - 336 0.0032 17.5 0.9 1 2 2.6 5.9e+03 -2.7 0.0 10 56 22 69 17 75 0.60 Protein of unknown function (DUF2841) DUF2841 PF11001.8 124 CP013117_00073 - 336 0.0032 17.5 0.9 2 2 3.9e-06 0.0087 16.1 0.7 15 88 179 263 162 323 0.71 Protein of unknown function (DUF2841) RIO1 PF01163.22 188 CP013117_00073 - 336 0.0073 15.9 2.5 1 2 2 4.5e+03 -3.0 0.0 20 34 46 60 37 78 0.60 RIO1 family RIO1 PF01163.22 188 CP013117_00073 - 336 0.0073 15.9 2.5 2 2 3.3e-06 0.0073 15.9 2.5 25 150 167 291 151 302 0.74 RIO1 family ORC6 PF05460.13 357 CP013117_00073 - 336 0.0086 15.4 0.2 1 1 5.4e-06 0.012 14.9 0.2 192 282 163 254 116 268 0.78 Origin recognition complex subunit 6 (ORC6) Pectate_lyase_3 PF12708.7 215 CP013117_00073 - 336 0.068 13.0 0.4 1 1 6e-05 0.14 12.0 0.4 49 199 148 324 143 333 0.59 Pectate lyase superfamily protein Pex19 PF04614.12 244 CP013117_00073 - 336 3.6 7.3 5.4 1 1 0.0033 7.5 6.2 5.4 152 207 172 228 168 231 0.87 Pex19 protein family HicB_lk_antitox PF15919.5 123 CP013117_00075 - 72 3.6e-09 36.8 0.0 1 1 4.2e-13 3.8e-09 36.7 0.0 3 60 5 61 3 71 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 CP013117_00075 - 72 0.065 12.6 0.0 1 1 7.9e-06 0.071 12.5 0.0 12 60 21 69 15 72 0.92 IRSp53/MIM homology domain AAA_25 PF13481.6 194 CP013117_00076 - 597 1.8e-15 57.0 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 CP013117_00076 - 597 0.00087 18.7 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP013117_00076 - 597 0.00087 18.7 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP013117_00076 - 597 0.0012 18.6 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP013117_00076 - 597 0.0012 18.6 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 CP013117_00076 - 597 0.0035 17.1 0.0 1 1 2.5e-06 0.0073 16.0 0.0 5 122 36 172 32 207 0.72 AAA domain ATPase PF06745.13 231 CP013117_00076 - 597 0.011 15.1 0.1 1 2 2.1e-05 0.064 12.6 0.0 16 70 30 83 26 214 0.87 KaiC ATPase PF06745.13 231 CP013117_00076 - 597 0.011 15.1 0.1 2 2 0.51 1.5e+03 -1.7 0.0 137 160 329 352 321 358 0.83 KaiC CbiA PF01656.23 128 CP013117_00076 - 597 0.18 11.9 0.9 1 1 0.00018 0.53 10.4 1.0 1 29 35 63 35 537 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain GBR_NSP5 PF17580.2 176 CP013117_00077 - 150 0.013 15.3 0.4 1 1 1.3e-06 0.024 14.5 0.4 17 64 43 90 26 97 0.78 Group B Rotavirus Non-structural protein 5 Resolvase PF00239.21 146 CP013117_00079 - 204 1.6e-33 115.9 0.7 1 1 4.7e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP013117_00079 - 204 0.024 14.4 0.8 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP013117_00079 - 204 0.024 14.4 0.8 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 CP013117_00079 - 204 0.024 14.4 0.8 3 3 0.01 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP013117_00079 - 204 0.028 14.5 4.9 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP013117_00079 - 204 0.028 14.5 4.9 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP013117_00079 - 204 0.028 14.5 4.9 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 CP013117_00079 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP013117_00079 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP013117_00079 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 CP013117_00080 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP013117_00080 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 CP013117_00080 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 CP013117_00082 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP013117_00082 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 CP013117_00083 - 922 1.3e-51 175.6 0.7 1 1 5e-55 3e-51 174.5 0.7 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP013117_00083 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 CP013117_00083 - 922 0.046 13.2 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 CP013117_00084 - 185 1e-28 99.7 0.0 1 1 1.8e-32 1.6e-28 99.1 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 CP013117_00084 - 185 0.00048 20.2 0.0 1 1 1.1e-07 0.001 19.1 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) DUF3251 PF11622.8 165 CP013117_00085 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 CP013117_00085 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 CP013117_00085 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 CP013117_00085 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP013117_00085 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP013117_00085 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 CP013117_00085 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP013117_00085 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP013117_00085 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 CP013117_00085 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 CP013117_00085 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 CP013117_00085 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP013117_00085 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP013117_00085 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 CP013117_00086 - 140 2.6e-25 88.5 0.1 1 1 1.9e-29 3.5e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 CP013117_00087 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP013117_00087 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP013117_00087 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP013117_00087 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP013117_00087 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP013117_00087 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP013117_00087 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 CP013117_00088 - 328 5e-28 98.9 13.9 1 1 2.4e-31 7.2e-28 98.3 13.9 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 CP013117_00088 - 328 0.0042 17.2 1.4 1 3 0.88 2.6e+03 -1.4 0.0 30 53 134 157 122 164 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP013117_00088 - 328 0.0042 17.2 1.4 2 3 5.4e-06 0.016 15.3 0.1 18 82 195 259 188 263 0.92 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP013117_00088 - 328 0.0042 17.2 1.4 3 3 1.2 3.7e+03 -1.9 0.0 62 79 302 319 292 327 0.75 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CP013117_00088 - 328 0.007 17.1 5.8 1 2 0.034 1e+02 3.6 0.5 93 135 105 145 40 182 0.61 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP013117_00088 - 328 0.007 17.1 5.8 2 2 2.3e-06 0.007 17.1 5.8 47 125 219 315 203 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 CP013117_00088 - 328 0.092 13.4 3.4 1 2 1.7 5.1e+03 -1.9 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP013117_00088 - 328 0.092 13.4 3.4 2 2 2.6e-05 0.078 13.6 1.0 32 84 209 270 202 295 0.83 von Willebrand factor type A domain Phage_holin_6_1 PF09682.10 101 CP013117_00088 - 328 0.13 12.7 8.7 1 2 9.1e-05 0.27 11.7 0.3 4 62 77 136 75 154 0.81 Bacteriophage holin of superfamily 6 (Holin_LLH) Phage_holin_6_1 PF09682.10 101 CP013117_00088 - 328 0.13 12.7 8.7 2 2 0.017 51 4.4 2.4 36 90 268 323 251 327 0.83 Bacteriophage holin of superfamily 6 (Holin_LLH) DUF3752 PF12572.8 152 CP013117_00088 - 328 2.8 8.5 8.6 1 2 0.0033 9.9 6.7 0.4 21 49 106 136 98 153 0.70 Protein of unknown function (DUF3752) DUF3752 PF12572.8 152 CP013117_00088 - 328 2.8 8.5 8.6 2 2 0.01 31 5.1 2.6 33 106 233 320 218 328 0.76 Protein of unknown function (DUF3752) TrbL PF04610.14 215 CP013117_00089 - 330 4.7e-29 101.7 31.2 1 2 7.8e-33 4.7e-29 101.7 31.2 1 214 38 250 38 253 0.91 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP013117_00089 - 330 4.7e-29 101.7 31.2 2 2 0.11 6.3e+02 -0.0 0.4 55 88 281 324 242 330 0.42 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP013117_00089 - 330 0.22 11.3 1.3 1 2 0.19 1.2e+03 -0.6 0.1 38 65 68 101 59 114 0.50 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP013117_00089 - 330 0.22 11.3 1.3 2 2 0.00013 0.79 9.6 0.1 30 81 235 286 201 298 0.76 T-cell leukemia translocation-altered AIM3 PF17096.5 88 CP013117_00089 - 330 1.7 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 297 327 290 329 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 CP013117_00090 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CP013117_00090 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 CP013117_00091 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CP013117_00091 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 CP013117_00092 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CP013117_00092 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CP013117_00092 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 CP013117_00093 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP013117_00093 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 CP013117_00094 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP013117_00094 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP013117_00094 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP013117_00094 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP013117_00094 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CP013117_00094 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CP013117_00094 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CP013117_00094 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP013117_00094 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CP013117_00094 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP013117_00094 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP013117_00094 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CP013117_00094 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CP013117_00094 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CP013117_00094 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP013117_00094 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CP013117_00094 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CP013117_00094 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CP013117_00094 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CP013117_00094 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CP013117_00094 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP013117_00094 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CP013117_00094 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP013117_00094 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP013117_00094 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CP013117_00094 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CP013117_00094 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 CP013117_00094 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP013117_00094 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP013117_00094 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CP013117_00094 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 CP013117_00094 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 CP013117_00095 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP013117_00095 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP013117_00095 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP013117_00095 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CP013117_00095 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 CP013117_00096 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 CP013117_00096 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 CP013117_00096 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CP013117_00096 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CP013117_00096 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 CP013117_00097 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 CP013117_00098 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 CP013117_00098 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 CP013117_00098 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 CP013117_00098 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP013117_00098 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP013117_00098 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 CP013117_00100 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP013117_00100 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 CP013117_00101 - 676 9.9e-97 324.5 8.2 1 1 4.5e-100 1.4e-96 324.1 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP013117_00101 - 676 1.4e-12 47.7 0.4 1 2 3.1e-15 9.1e-12 45.1 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP013117_00101 - 676 1.4e-12 47.7 0.4 2 2 1.2 3.7e+03 -1.8 0.1 38 55 537 555 487 569 0.63 Toprim domain zinc_ribbon_9 PF14369.6 35 CP013117_00101 - 676 0.05 13.9 0.7 1 2 2.9 8.5e+03 -2.9 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP013117_00101 - 676 0.05 13.9 0.7 2 2 2.7e-05 0.079 13.2 0.0 18 35 624 641 614 641 0.76 zinc-ribbon zf-C4_Topoisom PF01396.19 39 CP013117_00101 - 676 0.057 13.2 2.4 1 1 5.4e-05 0.16 11.8 2.4 2 27 628 656 627 665 0.89 Topoisomerase DNA binding C4 zinc finger EF-hand_8 PF13833.6 55 CP013117_00101 - 676 0.077 12.9 0.0 1 1 9.3e-05 0.28 11.1 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 CP013117_00101 - 676 0.27 11.4 2.9 1 3 0.59 1.8e+03 -0.8 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP013117_00101 - 676 0.27 11.4 2.9 2 3 1.6 4.9e+03 -2.2 0.1 46 63 472 489 470 493 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP013117_00101 - 676 0.27 11.4 2.9 3 3 0.00026 0.78 10.0 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain PcfJ PF14284.6 144 CP013117_00102 - 473 5.2e-05 23.2 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP013117_00102 - 473 0.022 14.7 4.0 1 2 0.14 1.2e+03 -0.7 0.2 12 60 218 271 211 299 0.70 Intein splicing domain Intein_splicing PF14890.6 134 CP013117_00102 - 473 0.022 14.7 4.0 2 2 3.6e-06 0.032 14.2 1.5 37 125 311 444 264 453 0.74 Intein splicing domain GTP_EFTU PF00009.27 194 CP013117_00104 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP013117_00104 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP013117_00104 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP013117_00104 - 639 1.2e-16 60.5 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP013117_00104 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 2.9e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP013117_00104 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP013117_00104 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP013117_00104 - 639 0.015 15.1 0.0 1 1 1.6e-05 0.031 14.1 0.0 42 82 377 417 344 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP013117_00104 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP013117_00104 - 639 0.047 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family CPT PF07931.12 174 CP013117_00105 - 152 1e-05 25.5 0.0 1 1 2.7e-09 1.2e-05 25.2 0.0 59 172 26 143 4 145 0.81 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 130 CP013117_00105 - 152 1.5e-05 25.6 0.0 1 1 4.5e-09 2e-05 25.1 0.0 45 124 20 106 2 112 0.76 AAA domain MKT1_N PF12247.8 90 CP013117_00105 - 152 0.016 15.6 0.0 1 1 1.6e-05 0.073 13.4 0.0 14 52 10 46 8 122 0.88 Temperature dependent protein affecting M2 dsRNA replication AAA_33 PF13671.6 143 CP013117_00105 - 152 0.023 14.9 0.0 1 1 7.6e-06 0.034 14.3 0.0 55 136 36 115 4 117 0.79 AAA domain APH PF01636.23 240 CP013117_00106 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 CP013117_00106 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 CP013117_00106 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 CP013117_00106 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 CP013117_00106 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 CP013117_00106 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 CP013117_00107 - 139 4.2e-51 174.0 0.1 1 1 2.7e-55 4.8e-51 173.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase Toprim_3 PF13362.6 95 CP013735_00001 - 410 2.4e-08 34.2 0.1 1 2 1.4 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 CP013735_00001 - 410 2.4e-08 34.2 0.1 2 2 1.4e-11 6.4e-08 32.8 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 CP013735_00001 - 410 0.016 15.5 0.1 1 2 0.024 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 CP013735_00001 - 410 0.016 15.5 0.1 2 2 0.00028 1.2 9.4 0.0 15 83 283 359 277 378 0.81 Retrotransposon gag protein DUF2315 PF10231.9 123 CP013735_00001 - 410 0.055 13.6 8.2 1 3 0.00028 1.3 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP013735_00001 - 410 0.055 13.6 8.2 2 3 0.0017 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP013735_00001 - 410 0.055 13.6 8.2 3 3 0.94 4.2e+03 -2.2 0.0 80 91 363 374 339 402 0.61 Apoptogenic protein 1 5_3_exonuc PF01367.20 97 CP013735_00001 - 410 0.33 11.6 2.5 1 2 0.62 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP013735_00001 - 410 0.33 11.6 2.5 2 2 0.0001 0.47 11.1 0.4 15 81 322 384 321 405 0.71 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 CP013735_00002 - 87 0.0072 16.3 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 CP013735_00002 - 87 0.0072 16.3 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 CP013735_00002 - 87 0.12 12.4 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain TOPRIM_C PF16898.5 128 CP013735_00003 - 69 0.029 14.7 1.5 1 1 1.7e-06 0.031 14.6 1.5 63 124 8 68 2 69 0.88 C-terminal associated domain of TOPRIM Pkinase PF00069.25 264 CP013735_00004 - 390 2.6e-30 105.7 7.7 1 1 1.2e-33 4.2e-30 105.0 7.7 5 202 156 356 153 390 0.81 Protein kinase domain Pkinase_Tyr PF07714.17 259 CP013735_00004 - 390 1.6e-26 93.2 0.7 1 1 6.2e-30 2.2e-26 92.7 0.7 6 163 157 308 154 380 0.85 Protein tyrosine kinase Pkinase_fungal PF17667.1 408 CP013735_00004 - 390 4.7e-06 25.6 0.7 1 1 2e-09 7e-06 25.1 0.7 314 364 254 301 240 319 0.77 Fungal protein kinase DUF2841 PF11001.8 124 CP013735_00004 - 390 0.0036 17.4 0.7 1 2 2.2 7.8e+03 -3.1 0.0 10 56 22 69 17 74 0.59 Protein of unknown function (DUF2841) DUF2841 PF11001.8 124 CP013735_00004 - 390 0.0036 17.4 0.7 2 2 3.3e-06 0.012 15.7 0.7 15 88 179 263 162 323 0.71 Protein of unknown function (DUF2841) ORC6 PF05460.13 357 CP013735_00004 - 390 0.011 15.0 0.2 1 1 4.6e-06 0.016 14.5 0.2 192 282 163 254 117 268 0.79 Origin recognition complex subunit 6 (ORC6) HicB_lk_antitox PF15919.5 123 CP013735_00006 - 72 3.6e-09 36.8 0.0 1 1 4.2e-13 3.8e-09 36.7 0.0 3 60 5 61 3 71 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 CP013735_00006 - 72 0.065 12.6 0.0 1 1 7.9e-06 0.071 12.5 0.0 12 60 21 69 15 72 0.92 IRSp53/MIM homology domain AAA_25 PF13481.6 194 CP013735_00007 - 597 1.8e-15 57.0 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 CP013735_00007 - 597 0.00087 18.7 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP013735_00007 - 597 0.00087 18.7 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP013735_00007 - 597 0.0012 18.6 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP013735_00007 - 597 0.0012 18.6 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 CP013735_00007 - 597 0.0035 17.1 0.0 1 1 2.5e-06 0.0073 16.0 0.0 5 122 36 172 32 207 0.72 AAA domain ATPase PF06745.13 231 CP013735_00007 - 597 0.011 15.1 0.1 1 2 2.1e-05 0.064 12.6 0.0 16 70 30 83 26 214 0.87 KaiC ATPase PF06745.13 231 CP013735_00007 - 597 0.011 15.1 0.1 2 2 0.51 1.5e+03 -1.7 0.0 137 160 329 352 321 358 0.83 KaiC CbiA PF01656.23 128 CP013735_00007 - 597 0.18 11.9 0.9 1 1 0.00018 0.53 10.4 1.0 1 29 35 63 35 537 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain GBR_NSP5 PF17580.2 176 CP013735_00008 - 150 0.011 15.6 0.4 1 1 1.3e-06 0.022 14.6 0.4 17 64 43 90 25 98 0.78 Group B Rotavirus Non-structural protein 5 Resolvase PF00239.21 146 CP013735_00010 - 204 1.6e-33 115.9 0.7 1 1 4.7e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP013735_00010 - 204 0.024 14.4 0.8 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP013735_00010 - 204 0.024 14.4 0.8 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 CP013735_00010 - 204 0.024 14.4 0.8 3 3 0.01 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP013735_00010 - 204 0.028 14.5 4.9 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP013735_00010 - 204 0.028 14.5 4.9 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP013735_00010 - 204 0.028 14.5 4.9 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 CP013735_00010 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP013735_00010 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP013735_00010 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 CP013735_00011 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP013735_00011 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 CP013735_00011 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 CP013735_00013 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP013735_00013 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 CP013735_00014 - 922 7.6e-52 176.4 0.8 1 1 4.1e-55 1.9e-51 175.1 0.8 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP013735_00014 - 922 7.3e-21 74.2 1.2 1 1 2.8e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 CP013735_00014 - 922 3.8e-07 29.3 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 CP013735_00014 - 922 0.038 14.1 5.5 1 5 0.46 2.1e+03 -1.4 0.1 96 202 139 253 124 278 0.55 Helicase HerA, central domain DUF87 PF01935.17 227 CP013735_00014 - 922 0.038 14.1 5.5 2 5 0.36 1.6e+03 -1.0 0.1 88 126 264 300 242 418 0.70 Helicase HerA, central domain DUF87 PF01935.17 227 CP013735_00014 - 922 0.038 14.1 5.5 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 CP013735_00014 - 922 0.038 14.1 5.5 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 CP013735_00014 - 922 0.038 14.1 5.5 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain Phage_pRha PF09669.10 88 CP013735_00015 - 185 6.7e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 CP013735_00015 - 185 0.0015 18.6 0.0 1 1 8.6e-07 0.0031 17.6 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 CP013735_00015 - 185 0.026 14.1 0.3 1 2 0.05 1.8e+02 1.6 0.1 80 118 33 71 5 80 0.74 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 CP013735_00015 - 185 0.026 14.1 0.3 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 CP013735_00015 - 185 0.081 12.9 0.1 1 1 6.1e-05 0.22 11.5 0.0 77 131 80 130 69 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 CP013735_00015 - 185 0.83 9.7 7.1 1 3 0.019 69 3.6 0.1 40 53 12 25 3 29 0.83 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CP013735_00015 - 185 0.83 9.7 7.1 2 3 0.0022 7.9 6.6 0.9 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CP013735_00015 - 185 0.83 9.7 7.1 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 DUF3895 PF13034.6 76 CP013735_00016 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 CP013735_00016 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) SSB PF00436.25 104 CP013735_00017 - 141 7e-25 87.1 0.1 1 1 4.9e-29 8.8e-25 86.8 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 CP013735_00018 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP013735_00018 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP013735_00018 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP013735_00018 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP013735_00018 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP013735_00018 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP013735_00018 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 CP013735_00019 - 323 4.7e-28 98.9 14.1 1 1 2.7e-31 6.1e-28 98.6 14.1 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 CP013735_00019 - 323 0.0059 16.7 0.7 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP013735_00019 - 323 0.0059 16.7 0.7 2 2 9.1e-06 0.02 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CP013735_00019 - 323 0.011 16.4 5.4 1 3 0.067 1.5e+02 3.0 0.3 92 135 104 145 41 149 0.59 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP013735_00019 - 323 0.011 16.4 5.4 2 3 0.12 2.6e+02 2.2 0.5 52 135 111 145 93 185 0.58 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP013735_00019 - 323 0.011 16.4 5.4 3 3 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 CP013735_00019 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 CP013735_00019 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 CP013735_00019 - 323 0.069 13.8 0.9 1 2 2.2 4.9e+03 -1.8 0.0 55 72 124 141 101 172 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP013735_00019 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain Allexi_40kDa PF05549.11 271 CP013735_00019 - 323 0.81 9.1 5.0 1 2 0.21 4.8e+02 0.1 0.1 37 123 47 138 33 177 0.61 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 CP013735_00019 - 323 0.81 9.1 5.0 2 2 0.0002 0.46 10.0 1.6 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein THOC7 PF05615.13 132 CP013735_00019 - 323 3 8.1 11.6 1 2 0.00072 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 CP013735_00019 - 323 3 8.1 11.6 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 DHR10 PF18595.1 117 CP013735_00019 - 323 5.7 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 CP013735_00019 - 323 5.7 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain TrbL PF04610.14 215 CP013735_00020 - 332 2.8e-30 105.7 31.4 1 2 4.7e-34 2.8e-30 105.7 31.4 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP013735_00020 - 332 2.8e-30 105.7 31.4 2 2 0.24 1.4e+03 -1.2 0.1 61 91 293 329 260 332 0.58 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP013735_00020 - 332 0.16 11.8 1.2 1 2 0.16 9.4e+02 -0.3 0.1 35 67 67 105 60 118 0.65 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP013735_00020 - 332 0.16 11.8 1.2 2 2 0.00011 0.68 9.8 0.1 28 81 238 288 209 301 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 CP013735_00020 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 CP013735_00021 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CP013735_00021 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 CP013735_00022 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CP013735_00022 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 CP013735_00023 - 295 2e-54 184.5 1.5 1 1 3.7e-58 3.3e-54 183.8 1.5 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CP013735_00023 - 295 0.072 12.9 0.5 1 2 1.8e-05 0.16 11.8 0.0 1 51 1 51 1 66 0.92 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CP013735_00023 - 295 0.072 12.9 0.5 2 2 1.1 9.7e+03 -3.7 0.1 50 62 130 142 124 149 0.68 Domain of unknown function (DUF4354) TrbI PF03743.14 187 CP013735_00024 - 391 3.3e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP013735_00024 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 CP013735_00025 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP013735_00025 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP013735_00025 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP013735_00025 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP013735_00025 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CP013735_00025 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CP013735_00025 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CP013735_00025 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP013735_00025 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CP013735_00025 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP013735_00025 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP013735_00025 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CP013735_00025 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CP013735_00025 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CP013735_00025 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP013735_00025 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CP013735_00025 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CP013735_00025 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CP013735_00025 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CP013735_00025 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CP013735_00025 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP013735_00025 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CP013735_00025 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP013735_00025 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP013735_00025 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CP013735_00025 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CP013735_00025 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 CP013735_00025 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP013735_00025 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP013735_00025 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CP013735_00025 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 CP013735_00025 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 CP013735_00026 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP013735_00026 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP013735_00026 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP013735_00026 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CP013735_00026 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 CP013735_00027 - 145 5.5e-17 62.1 0.4 1 1 1.2e-20 6.9e-17 61.8 0.4 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 CP013735_00027 - 145 0.068 13.0 0.2 1 1 3.3e-05 0.19 11.5 0.2 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CP013735_00027 - 145 3.9 7.4 6.0 1 2 0.00075 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CP013735_00027 - 145 3.9 7.4 6.0 2 2 0.16 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 CP013735_00028 - 216 8.4e-36 123.3 1.7 1 1 6e-40 1.1e-35 122.9 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 CP013735_00029 - 265 0.038 13.8 0.4 1 2 0.3 5.4e+03 -2.9 0.1 129 153 22 46 15 49 0.68 PRELI-like family PRELI PF04707.14 157 CP013735_00029 - 265 0.038 13.8 0.4 2 2 2.1e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Redoxin PF08534.10 147 CP013735_00031 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP013735_00031 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 CP013735_00032 - 730 1.1e-97 327.7 8.1 1 1 1.5e-100 1.6e-97 327.2 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP013735_00032 - 730 4.4e-12 46.1 2.6 1 2 6.1e-15 6.4e-12 45.6 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP013735_00032 - 730 4.4e-12 46.1 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 CP013735_00032 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP013735_00032 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP013735_00032 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP013735_00032 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP013735_00032 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CP013735_00032 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP013735_00032 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CP013735_00032 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP013735_00032 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 CP013735_00032 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 CP013735_00032 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 CP013735_00032 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP013735_00032 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CP013735_00032 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP013735_00032 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 CP013735_00032 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 CP013735_00032 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP013735_00032 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 CP013735_00032 - 730 0.43 10.8 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP013735_00032 - 730 0.43 10.8 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP013735_00032 - 730 0.43 10.8 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 CP013735_00032 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 CP013735_00032 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 CP013735_00032 - 730 0.63 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP013735_00032 - 730 0.63 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 CP013735_00032 - 730 0.73 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 CP013735_00032 - 730 0.73 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 CP013735_00032 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 CP013735_00032 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 CP013735_00032 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 CP013735_00032 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 CP013735_00033 - 462 0.00012 22.0 2.7 1 1 3.5e-08 0.00031 20.6 2.7 4 133 331 456 328 461 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP013735_00033 - 462 0.035 14.0 4.6 1 1 2.8e-05 0.25 11.3 4.6 37 125 311 444 210 452 0.79 Intein splicing domain Ribonuc_2-5A PF06479.12 127 CP013735_00034 - 105 0.022 14.9 1.5 1 1 3.3e-06 0.03 14.5 1.5 46 91 18 66 2 89 0.78 Ribonuclease 2-5A DUF5311 PF17238.2 194 CP013735_00034 - 105 0.053 13.4 0.0 1 1 6.9e-06 0.062 13.2 0.0 89 122 26 61 10 77 0.80 Family of unknown function (DUF5311) T6SS-SciN PF12790.7 120 CP014345_00001 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 428 CP014345_00002 - 465 4.7e-112 374.8 0.0 1 1 3.1e-116 5.5e-112 374.6 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 205 CP014345_00003 - 257 3.6e-35 121.5 0.0 1 1 2.3e-39 4.2e-35 121.4 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_HCP PF05638.12 129 CP014345_00004 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 259 CP014345_00005 - 1175 6.2e-41 140.5 0.0 1 1 4.1e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 CP014345_00005 - 1175 5.9e-40 137.1 0.5 1 1 4.1e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 CP014345_00005 - 1175 8.2e-27 94.5 2.1 1 1 4.9e-30 1.3e-26 93.9 2.1 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 CP014345_00005 - 1175 0.0003 20.7 0.0 1 2 8.9e-06 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 CP014345_00005 - 1175 0.0003 20.7 0.0 2 2 0.047 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 CP014345_00005 - 1175 0.0011 19.0 0.1 1 2 1.7e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 CP014345_00005 - 1175 0.0011 19.0 0.1 2 2 4.1 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 CP014345_00005 - 1175 0.0041 16.8 4.8 1 3 1.4e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 CP014345_00005 - 1175 0.0041 16.8 4.8 2 3 0.13 3.4e+02 0.8 0.0 41 77 451 487 432 583 0.80 O-Antigen ligase Wzy_C PF04932.15 155 CP014345_00005 - 1175 0.0041 16.8 4.8 3 3 0.076 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 CP014345_00005 - 1175 0.055 13.2 0.1 1 2 0.00017 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 CP014345_00005 - 1175 0.055 13.2 0.1 2 2 0.76 1.9e+03 -1.3 0.0 22 37 841 856 831 870 0.75 P-loop containing region of AAA domain FHA PF00498.26 69 CP014345_00006 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 CP014345_00006 - 299 0.0007 19.9 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 CP014345_00006 - 299 0.0007 19.9 0.0 2 2 0.23 1.4e+03 -0.3 0.0 31 57 199 225 198 231 0.89 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 CP014345_00006 - 299 0.05 14.0 3.1 1 2 0.044 2.6e+02 2.1 0.1 18 58 107 147 105 150 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 CP014345_00006 - 299 0.05 14.0 3.1 2 2 7.4e-05 0.44 11.0 0.9 21 82 151 212 146 218 0.92 Ferredoxin-fold anticodon binding domain DUF2974 PF11187.8 224 CP014345_00010 - 500 3.9e-08 33.1 0.1 1 1 5.2e-11 1e-07 31.7 0.1 7 123 73 202 69 240 0.76 Protein of unknown function (DUF2974) Lipase_3 PF01764.25 142 CP014345_00010 - 500 6.3e-08 32.6 0.0 1 1 8.8e-11 1.8e-07 31.1 0.0 50 114 145 210 91 227 0.81 Lipase (class 3) DUF676 PF05057.14 219 CP014345_00010 - 500 3.1e-05 23.6 0.0 1 1 3.4e-08 6.8e-05 22.5 0.0 63 106 143 186 106 203 0.76 Putative serine esterase (DUF676) PGAP1 PF07819.13 231 CP014345_00010 - 500 4.2e-05 23.4 0.4 1 2 4.3e-07 0.00085 19.1 0.0 76 114 147 182 95 201 0.75 PGAP1-like protein PGAP1 PF07819.13 231 CP014345_00010 - 500 4.2e-05 23.4 0.4 2 2 0.08 1.6e+02 1.8 0.3 30 83 261 315 244 329 0.75 PGAP1-like protein LIDHydrolase PF10230.9 266 CP014345_00010 - 500 0.00084 19.0 0.0 1 1 8.7e-07 0.0017 17.9 0.0 66 101 141 175 100 186 0.72 Lipid-droplet associated hydrolase Abhydrolase_6 PF12697.7 220 CP014345_00010 - 500 0.0016 19.1 0.0 1 1 1.1e-06 0.0022 18.6 0.0 51 87 144 184 114 228 0.75 Alpha/beta hydrolase family UPF0227 PF05728.12 187 CP014345_00010 - 500 0.0033 17.4 0.1 1 2 1.5e-05 0.029 14.3 0.0 45 80 146 180 126 196 0.77 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 CP014345_00010 - 500 0.0033 17.4 0.1 2 2 0.43 8.5e+02 -0.2 0.0 115 145 380 411 357 428 0.73 Uncharacterised protein family (UPF0227) DUF4450 PF14614.6 217 CP014345_00010 - 500 0.036 13.6 1.9 1 3 3 6e+03 -3.4 0.1 102 127 18 46 16 61 0.61 Domain of unknown function (DUF4450) DUF4450 PF14614.6 217 CP014345_00010 - 500 0.036 13.6 1.9 2 3 3.2 6.3e+03 -3.5 0.0 156 173 329 346 319 348 0.71 Domain of unknown function (DUF4450) DUF4450 PF14614.6 217 CP014345_00010 - 500 0.036 13.6 1.9 3 3 2.3e-05 0.045 13.3 0.1 6 48 435 477 432 484 0.94 Domain of unknown function (DUF4450) SBDS PF01172.18 88 CP014345_00010 - 500 0.11 12.6 1.6 1 1 0.00041 0.82 9.8 1.5 8 31 396 420 390 476 0.78 Shwachman-Bodian-Diamond syndrome (SBDS) protein Lipase_3 PF01764.25 142 CP014345_00012 - 245 1.5e-08 34.6 0.0 1 1 3.1e-11 5e-08 32.9 0.0 50 113 176 240 139 243 0.77 Lipase (class 3) DUF2974 PF11187.8 224 CP014345_00012 - 245 3.1e-08 33.4 0.0 1 1 3.1e-11 5e-08 32.8 0.0 7 123 100 233 95 236 0.71 Protein of unknown function (DUF2974) DUF676 PF05057.14 219 CP014345_00012 - 245 1.1e-05 25.0 0.1 1 1 1.4e-08 2.3e-05 24.0 0.1 63 117 174 227 168 235 0.71 Putative serine esterase (DUF676) PGAP1 PF07819.13 231 CP014345_00012 - 245 5.6e-05 23.0 0.1 1 1 5.9e-08 9.7e-05 22.2 0.1 46 114 128 213 98 235 0.75 PGAP1-like protein LIDHydrolase PF10230.9 266 CP014345_00012 - 245 0.00041 20.0 0.1 1 1 3.9e-07 0.00064 19.3 0.1 67 101 173 206 133 218 0.72 Lipid-droplet associated hydrolase Abhydrolase_6 PF12697.7 220 CP014345_00012 - 245 0.00064 20.4 0.0 1 1 5.3e-07 0.00086 20.0 0.0 51 86 175 211 138 241 0.75 Alpha/beta hydrolase family UPF0227 PF05728.12 187 CP014345_00012 - 245 0.0014 18.6 0.3 1 2 1.3 2.1e+03 -1.5 0.1 115 148 46 79 32 96 0.58 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 CP014345_00012 - 245 0.0014 18.6 0.3 2 2 2.2e-06 0.0036 17.3 0.0 24 80 154 211 143 227 0.68 Uncharacterised protein family (UPF0227) Palm_thioest PF02089.15 242 CP014345_00012 - 245 0.014 15.3 1.8 1 2 0.44 7.2e+02 -0.2 0.5 152 206 29 91 18 115 0.65 Palmitoyl protein thioesterase Palm_thioest PF02089.15 242 CP014345_00012 - 245 0.014 15.3 1.8 2 2 1.6e-05 0.027 14.3 0.0 30 88 158 212 137 231 0.74 Palmitoyl protein thioesterase NMT PF01233.19 160 CP014345_00012 - 245 0.079 12.8 0.2 1 1 7e-05 0.11 12.3 0.2 28 123 90 188 62 195 0.79 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain Hydrolase_4 PF12146.8 239 CP014345_00012 - 245 0.17 11.2 0.0 1 1 0.00017 0.28 10.4 0.0 65 94 181 208 169 224 0.67 Serine aminopeptidase, S33 Ser_hydrolase PF06821.13 171 CP014345_00012 - 245 0.17 11.7 0.0 1 1 0.00017 0.28 11.0 0.0 6 71 141 206 138 219 0.80 Serine hydrolase DUF2070 PF09843.9 564 CP014345_00013 - 114 0.082 11.2 10.5 1 1 3.2e-05 0.094 11.0 10.5 80 172 9 105 3 113 0.74 Predicted membrane protein (DUF2070) DUF4199 PF13858.6 168 CP014345_00013 - 114 0.094 13.1 17.4 1 2 0.0018 5.3 7.4 8.4 6 59 11 62 7 66 0.60 Protein of unknown function (DUF4199) DUF4199 PF13858.6 168 CP014345_00013 - 114 0.094 13.1 17.4 2 2 0.00012 0.35 11.2 2.1 14 60 68 110 63 114 0.46 Protein of unknown function (DUF4199) Glucos_trans_II PF14264.6 297 CP014345_00013 - 114 0.2 11.0 22.9 1 2 0.0032 9.7 5.4 14.2 226 282 5 59 2 78 0.65 Glucosyl transferase GtrII Glucos_trans_II PF14264.6 297 CP014345_00013 - 114 0.2 11.0 22.9 2 2 0.0014 4.3 6.6 6.7 148 248 64 104 58 113 0.46 Glucosyl transferase GtrII ABC2_membrane_5 PF13346.6 206 CP014345_00013 - 114 0.31 10.5 21.7 1 2 0.035 1.1e+02 2.3 8.8 3 50 3 43 1 53 0.47 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 206 CP014345_00013 - 114 0.31 10.5 21.7 2 2 7.8e-06 0.023 14.2 5.5 2 65 53 113 51 114 0.71 ABC-2 family transporter protein DUF5385 PF17359.2 220 CP014345_00013 - 114 0.4 10.2 9.3 1 2 0.058 1.7e+02 1.6 0.6 5 30 35 61 32 67 0.59 Family of unknown function (DUF5385) DUF5385 PF17359.2 220 CP014345_00013 - 114 0.4 10.2 9.3 2 2 2.8e-05 0.085 12.4 2.6 2 31 81 112 80 114 0.50 Family of unknown function (DUF5385) DUF3784 PF12650.7 94 CP014345_00013 - 114 4.8 7.4 22.3 1 2 0.067 2e+02 2.3 7.2 48 90 10 56 3 60 0.64 Domain of unknown function (DUF3784) DUF3784 PF12650.7 94 CP014345_00013 - 114 4.8 7.4 22.3 2 2 7.4e-05 0.22 11.7 8.0 42 93 57 106 51 108 0.77 Domain of unknown function (DUF3784) RseC_MucC PF04246.12 130 CP014345_00014 - 93 9.1 6.3 6.3 1 2 0.085 1.5e+03 -1.0 0.1 78 96 5 22 3 31 0.58 Positive regulator of sigma(E), RseC/MucC RseC_MucC PF04246.12 130 CP014345_00014 - 93 9.1 6.3 6.3 2 2 0.00014 2.4 8.1 3.1 62 112 32 81 27 91 0.74 Positive regulator of sigma(E), RseC/MucC AAA_31 PF13614.6 177 CP014345_00016 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 CP014345_00016 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 CP014345_00016 - 186 0.0018 18.3 0.5 1 1 2.7e-06 0.016 15.3 0.5 1 55 3 89 3 164 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP014345_00016 - 186 0.014 14.9 0.0 1 1 3.1e-06 0.019 14.4 0.0 17 109 69 171 61 180 0.77 short chain dehydrogenase RHH_7 PF16777.5 74 CP014345_00017 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 CP014345_00017 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal OrfB_IS605 PF01385.19 120 CP014345_00018 - 90 1.8e-12 47.5 1.0 1 1 1.4e-16 2.5e-12 47.1 1.0 62 117 7 62 6 65 0.96 Probable transposase AAA_25 PF13481.6 194 CP014345_00019 - 599 2.9e-15 56.3 0.0 1 1 2.4e-18 6.2e-15 55.3 0.0 30 193 30 175 23 176 0.86 AAA domain DnaB_C PF03796.15 255 CP014345_00019 - 599 0.00024 20.5 0.0 1 2 3.9e-06 0.01 15.2 0.0 16 109 30 128 25 130 0.81 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP014345_00019 - 599 0.00024 20.5 0.0 2 2 0.0039 10 5.4 0.0 121 183 112 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP014345_00019 - 599 0.0012 18.6 0.0 1 2 9.7e-06 0.025 14.3 0.0 46 85 32 71 23 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP014345_00019 - 599 0.0012 18.6 0.0 2 2 0.11 2.7e+02 1.2 0.0 96 119 108 131 98 171 0.69 IstB-like ATP binding protein AAA_24 PF13479.6 197 CP014345_00019 - 599 0.0029 17.4 0.0 1 1 2.3e-06 0.006 16.3 0.0 5 122 36 172 32 206 0.73 AAA domain ATPase PF06745.13 231 CP014345_00019 - 599 0.0041 16.5 0.1 1 2 1.2e-05 0.03 13.7 0.0 16 77 30 89 25 215 0.63 KaiC ATPase PF06745.13 231 CP014345_00019 - 599 0.0041 16.5 0.1 2 2 0.65 1.7e+03 -1.9 0.0 137 160 329 352 322 358 0.84 KaiC AAA PF00004.29 132 CP014345_00019 - 599 0.053 13.9 0.8 1 3 0.00026 0.67 10.4 0.0 2 106 37 167 36 174 0.61 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP014345_00019 - 599 0.053 13.9 0.8 2 3 0.36 9.1e+02 0.2 0.0 57 74 417 436 383 456 0.76 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP014345_00019 - 599 0.053 13.9 0.8 3 3 3.5 9e+03 -3.0 0.0 23 49 497 525 477 529 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 CP014345_00019 - 599 0.16 12.1 0.8 1 1 0.00019 0.49 10.5 0.8 1 29 35 63 35 551 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain HicA_toxin PF07927.12 58 CP014345_00020 - 67 6.2e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 CP014345_00021 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Peptidase_M4_C PF02868.15 168 CP014345_00022 - 100 0.051 13.4 0.1 1 1 3.8e-06 0.068 13.0 0.1 103 150 12 59 4 65 0.90 Thermolysin metallopeptidase, alpha-helical domain AAA_31 PF13614.6 177 CP014345_00025 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 CP014345_00025 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 CP014345_00025 - 186 0.0018 18.3 0.5 1 1 2.7e-06 0.016 15.3 0.5 1 55 3 89 3 164 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP014345_00025 - 186 0.014 14.9 0.0 1 1 3.1e-06 0.019 14.4 0.0 17 109 69 171 61 180 0.77 short chain dehydrogenase RHH_7 PF16777.5 74 CP014345_00026 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 CP014345_00026 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal NYN PF01936.18 147 CP014345_00028 - 180 1.1e-09 39.0 0.0 1 1 2e-13 1.2e-09 38.8 0.0 60 123 74 146 15 161 0.80 NYN domain Peroxin-22 PF12827.7 113 CP014345_00028 - 180 0.004 17.0 0.6 1 1 1.3e-06 0.0079 16.1 0.6 25 105 81 162 46 169 0.76 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 CP014345_00028 - 180 0.029 15.0 0.0 1 1 8.3e-06 0.049 14.2 0.0 61 103 100 142 77 142 0.87 PIN domain Toprim_3 PF13362.6 95 CP014345_00030 - 409 2.4e-08 34.2 0.1 1 2 1.4 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 CP014345_00030 - 409 2.4e-08 34.2 0.1 2 2 1.4e-11 6.4e-08 32.9 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 CP014345_00030 - 409 0.017 15.4 0.2 1 2 0.024 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 CP014345_00030 - 409 0.017 15.4 0.2 2 2 0.00027 1.2 9.4 0.0 15 83 283 359 277 382 0.82 Retrotransposon gag protein DUF2315 PF10231.9 123 CP014345_00030 - 409 0.023 14.8 6.8 1 3 0.00028 1.3 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP014345_00030 - 409 0.023 14.8 6.8 2 3 0.0016 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP014345_00030 - 409 0.023 14.8 6.8 3 3 1.3 5.9e+03 -2.7 0.0 20 90 355 373 339 384 0.54 Apoptogenic protein 1 5_3_exonuc PF01367.20 97 CP014345_00030 - 409 0.25 12.0 1.7 1 2 0.62 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP014345_00030 - 409 0.25 12.0 1.7 2 2 0.00012 0.53 10.9 0.2 15 81 322 384 321 401 0.72 5'-3' exonuclease, C-terminal SAM fold Put_DNA-bind_N PF06971.13 49 CP014345_00032 - 141 0.016 15.2 0.0 1 1 1.5e-06 0.027 14.5 0.0 11 34 4 27 3 30 0.95 Putative DNA-binding protein N-terminus BLOC1_2 PF10046.9 96 CP014345_00033 - 432 0.049 13.9 1.0 1 1 2.8e-05 0.25 11.7 1.0 44 95 263 314 260 315 0.94 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2459 PF09601.10 171 CP014345_00033 - 432 0.053 13.3 1.1 1 2 1.3e-05 0.12 12.2 0.1 87 163 131 199 119 201 0.72 Protein of unknown function (DUF2459) DUF2459 PF09601.10 171 CP014345_00033 - 432 0.053 13.3 1.1 2 2 0.32 2.8e+03 -2.1 0.1 143 143 289 289 239 346 0.63 Protein of unknown function (DUF2459) SseC PF04888.12 317 CP014345_00036 - 1310 0.005 16.5 0.2 1 1 3e-06 0.014 15.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family ThrE PF06738.12 241 CP014345_00036 - 1310 0.014 14.8 0.8 1 1 7.8e-06 0.035 13.5 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter Hormone_2 PF00123.20 28 CP014345_00036 - 1310 0.036 14.0 0.1 1 1 3.5e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone APOBEC_C PF05240.14 78 CP014345_00036 - 1310 0.061 13.3 0.4 1 1 6.9e-05 0.31 11.0 0.4 26 76 766 819 755 821 0.85 APOBEC-like C-terminal domain UvrA_DNA-bind PF17755.1 110 CP014345_00037 - 422 0.008 16.5 0.4 1 2 0.00015 2.8 8.3 0.1 24 65 32 73 19 86 0.82 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 CP014345_00037 - 422 0.008 16.5 0.4 2 2 0.00087 16 5.9 0.0 15 33 92 109 88 125 0.75 UvrA DNA-binding domain Glyco_tranf_2_5 PF13712.6 210 CP014345_00038 - 267 0.00068 19.4 3.8 1 1 7.1e-08 0.0013 18.5 3.8 4 77 114 190 111 198 0.85 Glycosyltransferase like family TraG_N PF07916.11 467 CP014345_00039 - 838 1.5e-38 132.9 22.2 1 3 1.7e-42 1.5e-38 132.9 22.2 13 465 3 449 1 455 0.80 TraG-like protein, N-terminal region TraG_N PF07916.11 467 CP014345_00039 - 838 1.5e-38 132.9 22.2 2 3 0.13 1.2e+03 -2.0 0.2 229 301 546 613 528 633 0.43 TraG-like protein, N-terminal region TraG_N PF07916.11 467 CP014345_00039 - 838 1.5e-38 132.9 22.2 3 3 0.39 3.5e+03 -3.5 4.5 210 295 632 724 584 756 0.53 TraG-like protein, N-terminal region CHMI PF02962.15 124 CP014345_00039 - 838 0.0083 16.5 0.0 1 1 6.3e-06 0.057 13.8 0.0 46 120 68 144 11 148 0.82 5-carboxymethyl-2-hydroxymuconate isomerase YafQ_toxin PF15738.5 88 CP014345_00041 - 93 2.5e-24 85.4 5.0 1 1 6.3e-28 2.8e-24 85.2 5.0 1 88 4 91 4 91 0.93 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 CP014345_00041 - 93 9.5e-06 26.1 0.3 1 1 2.7e-09 1.2e-05 25.8 0.3 3 89 8 89 6 90 0.79 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 87 CP014345_00041 - 93 0.00012 22.0 2.5 1 1 3.3e-08 0.00015 21.7 2.5 3 84 8 91 6 93 0.81 ParE-like toxin of type II bacterial toxin-antitoxin system BTHB PF18410.1 72 CP014345_00041 - 93 0.086 12.7 1.5 1 3 0.04 1.8e+02 2.0 0.1 53 66 11 24 5 30 0.79 Basic tilted helix bundle domain BTHB PF18410.1 72 CP014345_00041 - 93 0.086 12.7 1.5 2 3 0.16 7.4e+02 0.1 0.0 45 61 31 47 22 48 0.82 Basic tilted helix bundle domain BTHB PF18410.1 72 CP014345_00041 - 93 0.086 12.7 1.5 3 3 0.0002 0.87 9.4 0.1 34 63 45 74 41 80 0.92 Basic tilted helix bundle domain HicB_lk_antitox PF15919.5 123 CP014345_00043 - 120 8.6e-09 35.6 0.3 1 2 4.3e-06 0.039 14.1 0.0 1 60 13 75 13 80 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 CP014345_00043 - 120 8.6e-09 35.6 0.3 2 2 4e-08 0.00036 20.7 0.1 88 123 78 109 73 109 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 CP014345_00043 - 120 0.16 11.9 0.0 1 1 3.3e-05 0.3 11.0 0.0 3 35 81 113 80 116 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HicA_toxin PF07927.12 58 CP014345_00044 - 75 1.7e-06 28.0 0.0 1 1 1.4e-10 2.5e-06 27.4 0.0 5 55 24 71 20 72 0.88 HicA toxin of bacterial toxin-antitoxin, Fic PF02661.18 97 CP014345_00046 - 133 4.4e-05 24.3 0.0 1 1 8.9e-09 8e-05 23.5 0.0 23 97 6 76 2 76 0.72 Fic/DOC family Como_LCP PF02247.16 373 CP014345_00046 - 133 0.056 12.0 0.1 1 1 7.2e-06 0.065 11.8 0.1 238 302 51 116 35 129 0.88 Large coat protein Pox_J1 PF03338.15 146 CP014345_00047 - 220 0.0028 17.5 1.7 1 2 0.006 53 3.6 0.2 51 93 13 54 9 88 0.79 Poxvirus J1 protein Pox_J1 PF03338.15 146 CP014345_00047 - 220 0.0028 17.5 1.7 2 2 1.1e-05 0.096 12.5 0.1 13 50 125 162 119 169 0.88 Poxvirus J1 protein DHHA1 PF02272.19 138 CP014345_00047 - 220 0.85 10.0 3.4 1 1 0.00019 1.7 9.1 3.2 16 92 68 148 55 160 0.83 DHHA1 domain DUF3825 PF12873.7 239 CP014345_00048 - 335 2.2e-28 99.3 0.4 1 1 1.9e-32 3.4e-28 98.7 0.4 1 239 106 330 106 330 0.86 Domain of unknown function (DUF3825) DUF447 PF04289.12 176 CP014345_00049 - 130 0.029 14.1 0.1 1 1 7.7e-06 0.046 13.5 0.1 42 111 21 87 19 96 0.85 Protein of unknown function (DUF447) WH1 PF00568.23 111 CP014345_00049 - 130 0.04 13.9 0.3 1 1 1e-05 0.063 13.2 0.3 9 80 28 98 20 106 0.84 WH1 domain Cob_adeno_trans PF01923.18 164 CP014345_00049 - 130 0.045 13.9 0.1 1 1 9.9e-06 0.059 13.5 0.1 25 104 37 127 32 130 0.79 Cobalamin adenosyltransferase IMS_C PF11799.8 118 CP014345_00051 - 127 0.00012 22.7 0.0 1 1 2.2e-08 0.00019 22.1 0.0 59 111 11 62 3 67 0.88 impB/mucB/samB family C-terminal domain Patched PF02460.18 811 CP014345_00051 - 127 0.024 12.8 0.2 1 1 3.1e-06 0.027 12.5 0.2 3 75 52 122 50 126 0.91 Patched family IMS PF00817.20 150 CP014345_00052 - 328 7.5e-25 87.7 1.9 1 2 1.5e-28 1.4e-24 86.8 0.2 1 149 10 192 10 193 0.86 impB/mucB/samB family IMS PF00817.20 150 CP014345_00052 - 328 7.5e-25 87.7 1.9 2 2 0.21 1.9e+03 -1.2 0.1 55 84 295 324 284 327 0.72 impB/mucB/samB family IMS_HHH PF11798.8 32 CP014345_00052 - 328 0.00023 21.3 0.1 1 2 0.95 8.5e+03 -2.5 0.0 3 12 18 28 16 30 0.56 IMS family HHH motif IMS_HHH PF11798.8 32 CP014345_00052 - 328 0.00023 21.3 0.1 2 2 1.2e-07 0.0011 19.2 0.1 6 32 218 245 215 245 0.92 IMS family HHH motif CooC_C PF15976.5 93 CP014345_00054 - 53 0.015 15.3 0.0 1 1 1.8e-06 0.016 15.2 0.0 12 46 5 39 1 43 0.89 CS1-pili formation C-terminal PemK_toxin PF02452.17 111 CP014345_00054 - 53 0.04 14.3 0.0 1 1 5.3e-06 0.048 14.1 0.0 81 108 2 29 1 32 0.91 PemK-like, MazF-like toxin of type II toxin-antitoxin system HTH_3 PF01381.22 55 CP014345_00055 - 44 3.7e-07 30.1 0.0 1 1 4.6e-10 4.1e-07 30.0 0.0 1 36 9 43 9 44 0.94 Helix-turn-helix HTH_26 PF13443.6 63 CP014345_00055 - 44 0.00017 21.9 0.0 1 1 2.1e-07 0.00019 21.8 0.0 2 35 9 42 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 CP014345_00055 - 44 0.00074 19.0 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 65 CP014345_00055 - 44 0.0012 18.7 0.0 1 1 1.4e-06 0.0013 18.6 0.0 1 32 9 41 9 44 0.81 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_19 PF12844.7 65 CP014345_00055 - 44 0.0012 18.8 0.0 1 1 1.5e-06 0.0013 18.7 0.0 4 37 9 42 7 44 0.90 Helix-turn-helix domain HTH_23 PF13384.6 50 CP014345_00055 - 44 0.002 17.8 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 CP014345_00055 - 44 0.0038 17.3 0.3 1 1 6e-06 0.0054 16.8 0.3 25 46 1 22 1 40 0.90 ENT domain HTH_31 PF13560.6 64 CP014345_00055 - 44 0.0048 17.2 0.0 1 1 5.8e-06 0.0052 17.1 0.0 12 40 15 43 9 44 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 CP014345_00055 - 44 0.0094 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 CP014345_00055 - 44 0.0099 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 CP014345_00055 - 44 0.013 14.8 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 CP014345_00055 - 44 0.02 14.8 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 CP014345_00055 - 44 0.021 14.6 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain Phage_CI_repr PF07022.13 65 CP014345_00055 - 44 0.028 14.5 0.0 1 1 3.5e-05 0.032 14.3 0.0 3 33 9 38 7 42 0.84 Bacteriophage CI repressor helix-turn-helix domain HTH_AsnC-type PF13404.6 42 CP014345_00055 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 51 CP014345_00055 - 44 0.031 14.5 0.0 1 2 0.02 18 5.6 0.0 4 16 9 21 9 25 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 CP014345_00055 - 44 0.031 14.5 0.0 2 2 0.0034 3 8.1 0.0 6 28 22 43 19 44 0.83 Helix-turn-helix domain Sigma70_r4 PF04545.16 50 CP014345_00055 - 44 0.035 13.6 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 MerR PF00376.23 38 CP014345_00055 - 44 0.08 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 CP014345_00055 - 44 0.08 12.7 0.0 2 2 0.0096 8.6 6.2 0.0 4 18 22 36 21 43 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 CP014345_00055 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 CP014345_00055 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain DUF5601 PF18151.1 65 CP014345_00057 - 133 0.0084 16.4 0.4 1 1 1.8e-06 0.016 15.5 0.4 12 55 44 89 29 90 0.86 Domain of unknown function (DUF5601) IFP_35_N PF07334.13 76 CP014345_00057 - 133 0.14 12.2 4.9 1 3 0.0049 44 4.2 0.0 57 72 5 20 3 23 0.89 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 CP014345_00057 - 133 0.14 12.2 4.9 2 3 0.15 1.3e+03 -0.5 0.1 1 20 42 61 29 73 0.74 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 CP014345_00057 - 133 0.14 12.2 4.9 3 3 0.00022 2 8.5 0.4 6 28 97 119 90 126 0.88 Interferon-induced 35 kDa protein (IFP 35) N-terminus Occludin_ELL PF07303.13 101 CP014345_00060 - 115 0.0057 17.4 1.0 1 1 1.7e-06 0.0076 17.0 1.0 43 99 28 86 15 87 0.87 Occludin homology domain DUF2935 PF11155.8 122 CP014345_00060 - 115 0.019 15.3 1.9 1 1 5.2e-06 0.023 15.0 1.9 26 118 20 113 12 115 0.78 Domain of unknown function (DUF2935) HAUS4 PF14735.6 235 CP014345_00060 - 115 0.038 13.7 0.1 1 1 9.8e-06 0.044 13.5 0.1 51 130 26 107 7 112 0.88 HAUS augmin-like complex subunit 4 DUF2207 PF09972.9 492 CP014345_00060 - 115 0.19 10.5 2.4 1 1 4.5e-05 0.2 10.4 2.4 319 390 10 97 2 113 0.62 Predicted membrane protein (DUF2207) Phage_NinH PF06322.11 60 CP014345_00061 - 47 0.1 12.5 0.2 1 1 7e-06 0.13 12.2 0.2 36 56 26 46 21 47 0.90 Phage NinH protein YafQ_toxin PF15738.5 88 CP014345_00065 - 106 1.6e-26 92.4 3.7 1 1 4.7e-30 2.1e-26 92.0 3.7 1 87 20 106 20 106 0.95 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 CP014345_00065 - 106 1.9e-06 28.4 0.6 1 1 4.9e-10 2.2e-06 28.2 0.6 6 89 23 105 18 106 0.80 ParE toxin of type II toxin-antitoxin system, parDE Ribosomal_S2 PF00318.20 215 CP014345_00065 - 106 0.0042 16.3 0.9 1 1 1.2e-06 0.0053 16.0 0.9 98 164 27 94 21 99 0.83 Ribosomal protein S2 ParE-like_toxin PF15781.5 87 CP014345_00065 - 106 0.017 15.1 1.6 1 1 7.8e-06 0.035 14.1 1.6 5 82 26 105 22 106 0.79 ParE-like toxin of type II bacterial toxin-antitoxin system WGR PF05406.15 80 CP014345_00070 - 75 4.2e-07 29.9 0.3 1 1 5.5e-11 4.9e-07 29.7 0.3 3 73 4 74 2 75 0.86 WGR domain Cadherin_pro PF08758.11 90 CP014345_00070 - 75 0.035 14.3 0.0 1 1 4.8e-06 0.043 14.0 0.0 15 44 26 55 12 62 0.80 Cadherin prodomain like FlaC_arch PF05377.11 55 CP014345_00071 - 76 0.0068 16.8 1.5 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 CP014345_00071 - 76 0.0068 16.8 1.5 2 2 3.8e-07 0.0068 16.8 1.5 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) Phage_integrase PF00589.22 172 CP014345_00072 - 312 4.9e-24 85.0 0.5 1 1 3.2e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 CP014345_00072 - 312 1.2e-05 25.5 4.2 1 2 1.5e-08 3.9e-05 23.9 1.8 1 79 16 99 16 102 0.92 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 CP014345_00072 - 312 1.2e-05 25.5 4.2 2 2 4 1e+04 -3.1 0.0 38 54 125 141 115 151 0.53 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP014345_00072 - 312 0.00017 21.8 4.6 1 3 6.8e-08 0.00017 21.8 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP014345_00072 - 312 0.00017 21.8 4.6 2 3 1.1 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP014345_00072 - 312 0.00017 21.8 4.6 3 3 2.1 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 85 CP014345_00072 - 312 0.0026 18.2 8.9 1 3 0.00099 2.5 8.6 0.3 35 80 5 49 2 53 0.86 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 CP014345_00072 - 312 0.0026 18.2 8.9 2 3 3.4e-06 0.0086 16.5 5.3 2 79 16 101 15 104 0.90 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 CP014345_00072 - 312 0.0026 18.2 8.9 3 3 2 5.2e+03 -2.0 0.1 8 22 285 299 281 302 0.77 Phage integrase, N-terminal SAM-like domain Phyto-Amp PF15438.6 195 CP014345_00072 - 312 0.0092 15.8 0.3 1 1 6.5e-06 0.017 15.0 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma Phage_int_SAM_3 PF14659.6 58 CP014345_00072 - 312 0.027 14.7 3.2 1 1 4.2e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain YbjN PF10722.9 127 CP014345_00072 - 312 0.029 14.4 0.3 1 2 0.00055 1.4 9.0 0.1 38 77 96 135 91 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 CP014345_00072 - 312 0.029 14.4 0.3 2 2 0.047 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator Prok-TraM PF09228.10 102 CP014345_00074 - 298 0.087 13.2 0.0 1 1 2e-05 0.18 12.2 0.0 13 93 35 115 24 120 0.89 Prokaryotic Transcriptional repressor TraM Flu_B_M2 PF04772.12 109 CP014345_00074 - 298 2.3 8.5 10.7 1 3 2.5e-05 0.22 11.8 0.4 43 101 80 138 67 141 0.90 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 CP014345_00074 - 298 2.3 8.5 10.7 2 3 0.013 1.1e+02 3.0 2.9 25 87 133 195 132 208 0.88 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 CP014345_00074 - 298 2.3 8.5 10.7 3 3 0.27 2.4e+03 -1.2 0.0 74 104 236 266 228 270 0.67 Influenza B matrix protein 2 (BM2) TagA PF12561.8 99 CP014345_00075 - 210 1.1 9.7 3.4 1 2 0.00094 17 5.9 0.7 31 90 68 127 55 133 0.81 ToxR activated gene A lipoprotein domain TagA PF12561.8 99 CP014345_00075 - 210 1.1 9.7 3.4 2 2 0.0027 49 4.4 0.1 63 88 184 209 166 210 0.84 ToxR activated gene A lipoprotein domain DUF4299 PF14132.6 301 CP014345_00076 - 116 3.2e-08 33.4 0.1 1 1 6.2e-12 3.7e-08 33.2 0.1 189 300 12 110 5 111 0.85 Domain of unknown function (DUF4299) A2M PF00207.22 92 CP014345_00076 - 116 0.11 12.3 0.0 1 1 2.6e-05 0.16 11.9 0.0 17 56 49 89 36 94 0.81 Alpha-2-macroglobulin family XPG_I PF00867.18 94 CP014345_00076 - 116 0.13 12.7 0.0 1 1 2.6e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region AHH PF14412.6 114 CP014345_00078 - 259 5.3e-16 58.7 1.4 1 1 1.1e-19 9.6e-16 57.9 1.4 10 113 155 241 148 242 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH RRF PF01765.19 162 CP014345_00078 - 259 0.12 12.3 4.7 1 2 1.8e-05 0.16 11.9 0.1 124 153 163 193 112 199 0.86 Ribosome recycling factor RRF PF01765.19 162 CP014345_00078 - 259 0.12 12.3 4.7 2 2 0.025 2.3e+02 1.7 1.1 121 146 215 242 207 256 0.69 Ribosome recycling factor Glyco_hydro_59 PF02057.15 294 CP014345_00080 - 287 0.022 14.0 1.2 1 1 2.4e-06 0.043 13.1 1.2 109 165 106 159 99 178 0.87 Glycosyl hydrolase family 59 Nucleoside_tran PF01733.18 309 CP014345_00082 - 289 0.15 11.4 2.7 1 1 4.6e-05 0.28 10.5 2.7 71 192 10 129 3 134 0.66 Nucleoside transporter Turandot PF07240.11 81 CP014345_00082 - 289 0.19 11.7 1.3 1 2 0.75 4.5e+03 -2.3 0.0 17 40 25 48 22 54 0.61 Stress-inducible humoral factor Turandot Turandot PF07240.11 81 CP014345_00082 - 289 0.19 11.7 1.3 2 2 8e-05 0.48 10.4 0.6 2 28 247 273 246 288 0.77 Stress-inducible humoral factor Turandot Sigma70_ner PF04546.13 204 CP014345_00082 - 289 0.2 11.5 6.4 1 2 0.03 1.8e+02 1.9 0.4 16 78 33 83 20 120 0.46 Sigma-70, non-essential region Sigma70_ner PF04546.13 204 CP014345_00082 - 289 0.2 11.5 6.4 2 2 1.7e-05 0.1 12.4 1.0 88 125 238 276 228 285 0.90 Sigma-70, non-essential region Rapsyn_N PF10579.9 80 CP014345_00084 - 358 0.53 10.4 3.8 1 3 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 CP014345_00084 - 358 0.53 10.4 3.8 2 3 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 CP014345_00084 - 358 0.53 10.4 3.8 3 3 0.24 4.3e+03 -2.1 0.1 19 34 340 355 329 356 0.74 Rapsyn N-terminal myristoylation and linker region DUF2768 PF10966.8 58 CP014345_00085 - 114 0.0086 16.5 0.2 1 2 1.9e-06 0.0086 16.5 0.2 22 57 37 72 35 72 0.95 Protein of unknown function (DUF2768) DUF2768 PF10966.8 58 CP014345_00085 - 114 0.0086 16.5 0.2 2 2 0.4 1.8e+03 -0.5 1.3 6 13 96 103 79 108 0.53 Protein of unknown function (DUF2768) DiS_P_DiS PF06750.13 84 CP014345_00085 - 114 0.027 14.6 0.4 1 1 1.2e-05 0.054 13.6 0.4 29 73 6 50 2 59 0.84 Bacterial Peptidase A24 N-terminal domain DZR PF12773.7 49 CP014345_00085 - 114 0.028 14.4 0.3 1 1 8.3e-06 0.037 14.0 0.3 13 37 5 38 2 45 0.88 Double zinc ribbon zinc_ribbon_4 PF13717.6 36 CP014345_00085 - 114 0.14 12.1 4.3 1 2 0.072 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP014345_00085 - 114 0.14 12.1 4.3 2 2 3.5e-05 0.16 12.0 0.3 3 16 30 43 29 47 0.86 zinc-ribbon domain Myc-LZ PF02344.15 31 CP014345_00086 - 34 0.045 13.9 0.4 1 1 3e-06 0.054 13.6 0.4 8 18 15 25 14 27 0.94 Myc leucine zipper domain Importin_rep PF18773.1 40 CP014345_00087 - 260 0.018 14.7 0.1 1 1 6.7e-06 0.04 13.6 0.1 16 27 231 242 226 249 0.90 Importin 13 repeat DUF327 PF03885.13 143 CP014345_00087 - 260 0.075 13.0 0.1 1 3 0.41 2.5e+03 -1.7 0.1 97 109 43 55 22 76 0.50 Protein of unknown function (DUF327) DUF327 PF03885.13 143 CP014345_00087 - 260 0.075 13.0 0.1 2 3 0.96 5.7e+03 -2.8 0.0 22 24 140 142 116 165 0.49 Protein of unknown function (DUF327) DUF327 PF03885.13 143 CP014345_00087 - 260 0.075 13.0 0.1 3 3 1.3e-05 0.075 13.0 0.1 48 85 217 254 191 258 0.89 Protein of unknown function (DUF327) BLOC1_2 PF10046.9 96 CP014345_00087 - 260 0.94 9.8 4.4 1 3 2.1 1.2e+04 -3.4 0.1 38 61 48 71 47 73 0.65 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP014345_00087 - 260 0.94 9.8 4.4 2 3 4.3e-05 0.26 11.6 0.4 22 75 115 172 110 179 0.87 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP014345_00087 - 260 0.94 9.8 4.4 3 3 0.81 4.8e+03 -2.1 0.0 70 79 245 254 228 258 0.43 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GPD PF05954.11 304 CP014345_00088 - 833 5.9e-18 65.2 0.0 1 1 1e-21 9.4e-18 64.5 0.0 22 281 73 360 45 376 0.76 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 CP014345_00088 - 833 0.11 12.2 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 CP014345_00088 - 833 0.11 12.2 0.0 2 2 0.00042 3.8 7.2 0.0 19 49 456 486 447 513 0.81 TCL1/MTCP1 family T6SS_TssG PF06996.11 299 CP014345_00089 - 302 1.9e-47 161.9 0.0 1 1 1.2e-51 2.2e-47 161.8 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG T6SS_TssF PF05947.12 603 CP014345_00090 - 573 1.6e-110 370.4 0.0 1 1 1e-114 1.8e-110 370.3 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF GPW_gp25 PF04965.14 95 CP014345_00091 - 130 2.2e-09 36.9 0.0 1 1 4.8e-13 2.9e-09 36.6 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 CP014345_00091 - 130 0.021 14.7 0.3 1 1 4.5e-06 0.027 14.3 0.3 94 159 21 87 5 92 0.87 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 CP014345_00091 - 130 0.072 12.6 0.2 1 2 2.9e-05 0.17 11.3 0.1 82 121 5 46 1 64 0.84 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 CP014345_00091 - 130 0.072 12.6 0.2 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 422 CP014345_00092 - 484 6e-170 565.6 0.0 1 1 7.9e-174 7.1e-170 565.3 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 CP014345_00092 - 484 0.33 11.0 2.6 1 4 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 CP014345_00092 - 484 0.33 11.0 2.6 2 4 1.5 1.4e+04 -3.9 0.0 103 117 130 143 127 147 0.66 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 CP014345_00092 - 484 0.33 11.0 2.6 3 4 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 CP014345_00092 - 484 0.33 11.0 2.6 4 4 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 155 CP014345_00093 - 161 6.4e-52 175.5 3.9 1 1 8e-56 7.2e-52 175.3 3.9 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 CP014345_00093 - 161 0.14 10.8 0.0 1 1 1.8e-05 0.16 10.5 0.0 171 227 55 111 40 127 0.90 Chitin synthase T6SS_VasJ PF16989.5 255 CP014345_00094 - 415 2.9e-12 46.6 0.0 1 1 9.3e-16 4.2e-12 46.1 0.0 3 153 176 323 174 408 0.83 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 CP014345_00094 - 415 0.00014 22.0 0.2 1 2 1.8e-07 0.0008 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 CP014345_00094 - 415 0.00014 22.0 0.2 2 2 0.31 1.4e+03 -0.6 0.0 47 71 185 209 162 212 0.83 ImpA, N-terminal, type VI secretion system TetR_C_24 PF17932.1 114 CP014345_00094 - 415 0.19 12.0 0.0 1 1 8.8e-05 0.4 11.0 0.0 20 68 71 119 62 132 0.87 Tetracyclin repressor-like, C-terminal domain PX PF00787.24 113 CP014345_00094 - 415 0.28 11.2 14.0 1 3 0.00025 1.1 9.2 2.4 31 111 33 130 20 131 0.67 PX domain PX PF00787.24 113 CP014345_00094 - 415 0.28 11.2 14.0 2 3 0.0042 19 5.3 0.1 16 111 155 274 132 276 0.64 PX domain PX PF00787.24 113 CP014345_00094 - 415 0.28 11.2 14.0 3 3 0.052 2.3e+02 1.8 0.7 22 97 316 396 296 404 0.70 PX domain Phage_portal PF04860.12 314 CP014569_00001 - 353 3.7e-29 101.9 0.1 1 1 5.4e-33 4.8e-29 101.5 0.1 27 314 60 348 45 348 0.85 Phage portal protein DUF3770 PF12603.8 235 CP014569_00001 - 353 0.036 13.6 0.1 1 1 6.8e-06 0.061 12.8 0.1 70 141 148 219 135 238 0.83 Protein of unknown function (DUF3770) Terminase_6 PF03237.15 215 CP014569_00002 - 577 8.4e-17 61.6 0.0 1 1 9e-20 1.6e-16 60.6 0.0 2 213 181 375 180 377 0.92 Terminase-like family Terminase_6C PF17289.2 155 CP014569_00002 - 577 1.9e-07 31.3 0.0 1 1 2.6e-10 4.6e-07 30.1 0.0 25 154 431 562 396 563 0.85 Terminase RNaseH-like domain HTH_Tnp_1 PF01527.20 75 CP014569_00002 - 577 1.4e-06 28.5 0.2 1 1 2.3e-09 4.1e-06 27.0 0.2 6 70 19 80 13 85 0.78 Transposase HTH_3 PF01381.22 55 CP014569_00002 - 577 0.00044 20.2 0.0 1 4 1.9e-05 0.034 14.2 0.0 7 44 33 72 30 75 0.88 Helix-turn-helix HTH_3 PF01381.22 55 CP014569_00002 - 577 0.00044 20.2 0.0 2 4 0.96 1.7e+03 -0.9 0.0 12 23 77 88 73 90 0.82 Helix-turn-helix HTH_3 PF01381.22 55 CP014569_00002 - 577 0.00044 20.2 0.0 3 4 0.25 4.4e+02 1.0 0.0 24 37 121 135 120 138 0.76 Helix-turn-helix HTH_3 PF01381.22 55 CP014569_00002 - 577 0.00044 20.2 0.0 4 4 5 9e+03 -3.2 0.0 40 52 223 235 221 236 0.81 Helix-turn-helix HTH_28 PF13518.6 52 CP014569_00002 - 577 0.0027 17.8 0.0 1 1 3.6e-06 0.0064 16.6 0.0 1 34 24 57 24 64 0.94 Helix-turn-helix domain HTH_29 PF13551.6 63 CP014569_00002 - 577 0.0043 17.0 0.0 1 1 6.2e-06 0.011 15.7 0.0 4 40 28 63 27 69 0.89 Winged helix-turn helix HTH_7 PF02796.15 45 CP014569_00002 - 577 0.035 14.2 0.0 1 1 4.8e-05 0.086 12.9 0.0 12 38 26 52 19 55 0.88 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 50 CP014569_00002 - 577 0.061 13.1 0.0 1 1 0.00012 0.22 11.4 0.0 12 43 30 61 25 65 0.83 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 52 CP014569_00002 - 577 0.081 12.3 0.0 1 1 0.00011 0.19 11.1 0.0 12 48 20 56 19 60 0.89 Helix-turn-helix domain of transposase family ISL3 Stirrup PF09061.6 79 CP014569_00002 - 577 0.11 12.7 0.0 1 2 0.0021 3.7 7.8 0.0 12 31 224 243 218 255 0.80 Stirrup Stirrup PF09061.6 79 CP014569_00002 - 577 0.11 12.7 0.0 2 2 0.2 3.5e+02 1.5 0.0 11 33 350 372 339 383 0.76 Stirrup YajC PF02699.15 80 CP014569_00004 - 36 0.044 13.7 0.0 1 1 5e-06 0.045 13.6 0.0 5 31 7 33 2 36 0.77 Preprotein translocase subunit FeoB_associated PF12669.7 44 CP014569_00004 - 36 0.057 13.8 0.0 1 1 7.5e-06 0.068 13.6 0.0 2 27 5 30 4 32 0.89 FeoB-associated Cys-rich membrane protein Phage_Mu_F PF04233.14 112 CP014569_00007 - 408 1.2e-05 26.0 0.0 1 1 5.9e-09 3.5e-05 24.5 0.0 44 111 181 277 124 278 0.71 Phage Mu protein F like protein SieB PF14163.6 147 CP014569_00007 - 408 0.065 12.7 5.5 1 2 3.9e-06 0.023 14.2 2.0 55 132 8 86 5 98 0.87 Super-infection exclusion protein B SieB PF14163.6 147 CP014569_00007 - 408 0.065 12.7 5.5 2 2 0.26 1.6e+03 -1.5 0.1 58 79 319 340 310 358 0.76 Super-infection exclusion protein B TFIID_NTD2 PF04494.15 130 CP014569_00007 - 408 0.53 10.5 3.9 1 3 0.13 7.9e+02 0.3 0.1 104 128 22 46 3 66 0.78 WD40 associated region in TFIID subunit, NTD2 domain TFIID_NTD2 PF04494.15 130 CP014569_00007 - 408 0.53 10.5 3.9 2 3 0.37 2.2e+03 -1.2 0.1 65 95 174 198 128 209 0.61 WD40 associated region in TFIID subunit, NTD2 domain TFIID_NTD2 PF04494.15 130 CP014569_00007 - 408 0.53 10.5 3.9 3 3 0.00017 1 9.6 0.1 61 104 325 368 306 375 0.87 WD40 associated region in TFIID subunit, NTD2 domain Zn_Tnp_IS1595 PF12760.7 46 CP014569_00008 - 61 0.0013 18.7 1.5 1 1 2.9e-07 0.0017 18.3 1.5 20 46 2 34 1 34 0.85 Transposase zinc-ribbon domain Elf1 PF05129.13 78 CP014569_00008 - 61 0.0049 16.9 0.3 1 1 9.6e-07 0.0058 16.7 0.3 24 67 3 47 1 51 0.90 Transcription elongation factor Elf1 like Cys_rich_KTR PF14205.6 54 CP014569_00008 - 61 0.097 12.5 5.1 1 1 2.7e-05 0.16 11.8 5.1 5 36 2 34 1 55 0.68 Cysteine-rich KTR DUF1018 PF06252.12 119 CP014569_00009 - 145 0.02 15.8 0.1 1 1 2e-06 0.036 15.0 0.1 4 116 29 139 27 141 0.78 Protein of unknown function (DUF1018) OrfB_IS605 PF01385.19 120 CP014569_00012 - 366 1.2e-24 86.8 0.2 1 2 0.18 8.1e+02 0.2 2.7 57 96 53 91 27 107 0.73 Probable transposase OrfB_IS605 PF01385.19 120 CP014569_00012 - 366 1.2e-24 86.8 0.2 2 2 2.7e-28 1.2e-24 86.8 0.2 2 119 160 275 159 276 0.95 Probable transposase OrfB_Zn_ribbon PF07282.11 69 CP014569_00012 - 366 3.3e-18 65.4 1.3 1 2 3.3 1.5e+04 -4.0 0.1 3 11 99 107 99 108 0.84 Putative transposase DNA-binding domain OrfB_Zn_ribbon PF07282.11 69 CP014569_00012 - 366 3.3e-18 65.4 1.3 2 2 7.4e-22 3.3e-18 65.4 1.3 1 68 285 349 285 350 0.92 Putative transposase DNA-binding domain VPS28 PF03997.12 189 CP014569_00012 - 366 0.051 13.3 0.4 1 3 1.1e-05 0.051 13.3 0.4 144 187 46 92 12 93 0.77 VPS28 protein VPS28 PF03997.12 189 CP014569_00012 - 366 0.051 13.3 0.4 2 3 0.24 1.1e+03 -0.9 0.2 144 160 227 243 166 268 0.62 VPS28 protein VPS28 PF03997.12 189 CP014569_00012 - 366 0.051 13.3 0.4 3 3 0.064 2.9e+02 1.0 0.2 113 167 238 290 233 310 0.75 VPS28 protein HTH_OrfB_IS605 PF12323.8 47 CP014569_00012 - 366 0.072 12.6 0.2 1 1 4.5e-05 0.2 11.2 0.2 1 44 1 42 1 45 0.90 Helix-turn-helix domain Y1_Tnp PF01797.16 121 CP014569_00013 - 151 1.5e-38 131.6 0.0 1 1 1.3e-42 2.3e-38 131.0 0.0 1 121 13 130 13 130 0.98 Transposase IS200 like DUF1353 PF07087.11 91 CP014569_00014 - 117 1.3e-18 66.4 0.0 1 1 8.9e-23 1.6e-18 66.2 0.0 4 91 21 107 18 107 0.91 Protein of unknown function (DUF1353) ExsD PF16806.5 238 CP014569_00015 - 356 0.0064 16.4 1.8 1 1 5.3e-06 0.0096 15.9 1.8 93 192 48 146 27 166 0.82 Antiactivator protein ExsD CBM_X2 PF03442.14 83 CP014569_00015 - 356 0.032 14.3 1.5 1 2 0.00026 0.47 10.6 0.3 14 61 113 160 108 166 0.91 Carbohydrate binding domain X2 CBM_X2 PF03442.14 83 CP014569_00015 - 356 0.032 14.3 1.5 2 2 0.13 2.3e+02 2.0 0.0 32 54 226 248 213 260 0.79 Carbohydrate binding domain X2 YlqD PF11068.8 131 CP014569_00015 - 356 0.052 13.9 4.1 1 1 4.7e-05 0.084 13.2 4.1 17 83 43 117 27 140 0.82 YlqD protein HSBP1 PF06825.12 51 CP014569_00015 - 356 0.065 13.1 0.4 1 2 0.00074 1.3 8.9 0.1 13 42 56 88 55 92 0.83 Heat shock factor binding protein 1 HSBP1 PF06825.12 51 CP014569_00015 - 356 0.065 13.1 0.4 2 2 0.19 3.5e+02 1.2 0.0 28 40 127 139 104 142 0.78 Heat shock factor binding protein 1 Spc7 PF08317.11 310 CP014569_00015 - 356 0.098 11.5 10.1 1 1 7.8e-05 0.14 11.0 10.1 140 239 39 138 31 160 0.79 Spc7 kinetochore protein DUF1465 PF07323.12 154 CP014569_00015 - 356 0.11 12.4 1.1 1 1 0.0001 0.18 11.6 1.1 84 137 43 97 25 116 0.77 Protein of unknown function (DUF1465) DUF1664 PF07889.12 124 CP014569_00015 - 356 0.28 11.2 4.1 1 1 0.00023 0.41 10.7 2.9 53 120 46 113 29 117 0.88 Protein of unknown function (DUF1664) DUF4455 PF14643.6 469 CP014569_00015 - 356 0.69 8.5 8.7 1 2 0.03 54 2.3 3.5 24 92 21 87 18 93 0.85 Domain of unknown function (DUF4455) DUF4455 PF14643.6 469 CP014569_00015 - 356 0.69 8.5 8.7 2 2 0.00027 0.48 9.0 0.2 18 74 98 156 91 160 0.85 Domain of unknown function (DUF4455) Atg14 PF10186.9 319 CP014569_00015 - 356 0.79 8.7 7.5 1 1 0.0011 2 7.4 7.4 26 91 42 107 36 139 0.85 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4795 PF16043.5 204 CP014569_00015 - 356 2.5 7.6 9.4 1 2 0.00086 1.5 8.3 6.2 13 68 35 99 19 103 0.84 Domain of unknown function (DUF4795) DUF4795 PF16043.5 204 CP014569_00015 - 356 2.5 7.6 9.4 2 2 0.13 2.2e+02 1.3 0.2 12 55 95 139 92 153 0.82 Domain of unknown function (DUF4795) DivIC PF04977.15 80 CP014569_00016 - 121 0.24 11.2 0.1 1 3 1.3e-05 0.24 11.2 0.1 3 54 7 58 5 64 0.92 Septum formation initiator DivIC PF04977.15 80 CP014569_00016 - 121 0.24 11.2 0.1 2 3 0.07 1.3e+03 -0.7 0.3 36 42 68 74 58 92 0.51 Septum formation initiator DivIC PF04977.15 80 CP014569_00016 - 121 0.24 11.2 0.1 3 3 0.0052 92 2.9 0.2 26 51 95 120 91 121 0.86 Septum formation initiator Phage_holin_3_3 PF16083.5 78 CP014569_00018 - 116 1.2e-10 41.3 4.9 1 1 9.1e-15 1.6e-10 40.9 4.9 3 74 18 93 17 97 0.93 LydA holin phage, holin superfamily III PG_binding_3 PF09374.10 76 CP014569_00019 - 184 2.5e-11 43.7 0.0 1 1 4.3e-15 3.9e-11 43.1 0.0 4 75 118 181 115 182 0.94 Predicted Peptidoglycan domain Glyco_hydro_108 PF05838.12 85 CP014569_00019 - 184 5e-08 33.3 0.1 1 1 1e-11 9.4e-08 32.4 0.1 20 85 31 112 22 112 0.90 Glycosyl hydrolase 108 MethyltransfD12 PF02086.15 260 CP014569_00020 - 253 1.3e-28 100.4 4.0 1 1 2.5e-32 2.2e-28 99.7 4.0 1 259 12 236 12 237 0.80 D12 class N6 adenine-specific DNA methyltransferase Zea_mays_MuDR PF05928.11 207 CP014569_00020 - 253 0.055 13.1 0.1 1 1 9.6e-06 0.086 12.5 0.1 163 196 212 245 204 252 0.89 Zea mays MURB-like protein (MuDR) HTH_26 PF13443.6 63 CP014569_00021 - 156 0.0001 22.7 0.1 1 3 0.21 3.9e+02 1.6 0.0 10 31 4 25 2 31 0.86 Cro/C1-type HTH DNA-binding domain HTH_26 PF13443.6 63 CP014569_00021 - 156 0.0001 22.7 0.1 2 3 0.00037 0.66 10.4 0.0 15 40 63 88 61 105 0.86 Cro/C1-type HTH DNA-binding domain HTH_26 PF13443.6 63 CP014569_00021 - 156 0.0001 22.7 0.1 3 3 0.0041 7.4 7.1 0.1 3 46 102 142 100 147 0.78 Cro/C1-type HTH DNA-binding domain HTH_28 PF13518.6 52 CP014569_00021 - 156 0.0042 17.2 0.0 1 3 0.15 2.7e+02 1.8 0.0 18 34 10 26 3 27 0.85 Helix-turn-helix domain HTH_28 PF13518.6 52 CP014569_00021 - 156 0.0042 17.2 0.0 2 3 0.00085 1.5 9.0 0.0 18 34 64 80 62 81 0.82 Helix-turn-helix domain HTH_28 PF13518.6 52 CP014569_00021 - 156 0.0042 17.2 0.0 3 3 0.11 1.9e+02 2.3 0.0 16 34 112 132 98 137 0.75 Helix-turn-helix domain HTH_3 PF01381.22 55 CP014569_00021 - 156 0.013 15.6 1.7 1 4 0.024 43 4.3 0.0 8 31 3 26 3 32 0.89 Helix-turn-helix HTH_3 PF01381.22 55 CP014569_00021 - 156 0.013 15.6 1.7 2 4 0.0038 6.7 6.8 0.0 18 34 67 83 62 86 0.90 Helix-turn-helix HTH_3 PF01381.22 55 CP014569_00021 - 156 0.013 15.6 1.7 3 4 0.19 3.3e+02 1.4 0.0 13 29 114 130 105 146 0.79 Helix-turn-helix HTH_3 PF01381.22 55 CP014569_00021 - 156 0.013 15.6 1.7 4 4 2.2 3.9e+03 -2.0 0.0 8 16 144 152 139 153 0.72 Helix-turn-helix Phage_terminase PF10668.9 60 CP014569_00021 - 156 0.015 15.3 0.5 1 3 0.0089 16 5.6 0.0 23 48 5 30 2 37 0.84 Phage terminase small subunit Phage_terminase PF10668.9 60 CP014569_00021 - 156 0.015 15.3 0.5 2 3 0.3 5.4e+02 0.7 0.0 26 43 62 79 58 88 0.84 Phage terminase small subunit Phage_terminase PF10668.9 60 CP014569_00021 - 156 0.015 15.3 0.5 3 3 0.01 19 5.4 0.2 22 44 110 132 97 141 0.85 Phage terminase small subunit DUF4004 PF13171.6 197 CP014569_00021 - 156 0.021 15.1 3.4 1 3 0.0056 10 6.3 0.2 5 25 7 27 3 32 0.90 Protein of unknown function (DUF4004) DUF4004 PF13171.6 197 CP014569_00021 - 156 0.021 15.1 3.4 2 3 0.0052 9.3 6.4 0.0 6 24 62 80 59 90 0.87 Protein of unknown function (DUF4004) DUF4004 PF13171.6 197 CP014569_00021 - 156 0.021 15.1 3.4 3 3 0.18 3.1e+02 1.4 0.2 3 24 111 132 109 135 0.89 Protein of unknown function (DUF4004) DUF2862 PF11061.8 61 CP014569_00021 - 156 0.053 13.4 0.1 1 2 0.0055 9.8 6.1 0.0 14 39 5 30 2 45 0.83 Protein of unknown function (DUF2862) DUF2862 PF11061.8 61 CP014569_00021 - 156 0.053 13.4 0.1 2 2 0.015 27 4.7 0.0 9 34 106 131 100 138 0.90 Protein of unknown function (DUF2862) HTH_23 PF13384.6 50 CP014569_00021 - 156 0.062 13.1 0.0 1 3 0.094 1.7e+02 2.2 0.0 17 39 4 26 1 29 0.88 Homeodomain-like domain HTH_23 PF13384.6 50 CP014569_00021 - 156 0.062 13.1 0.0 2 3 0.013 24 4.9 0.0 21 39 62 80 59 84 0.87 Homeodomain-like domain HTH_23 PF13384.6 50 CP014569_00021 - 156 0.062 13.1 0.0 3 3 0.11 2e+02 2.0 0.0 19 39 112 132 99 138 0.83 Homeodomain-like domain HTH_19 PF12844.7 65 CP014569_00021 - 156 0.1 12.6 0.0 1 3 2.2 4e+03 -2.1 0.0 47 55 9 17 3 39 0.65 Helix-turn-helix domain HTH_19 PF12844.7 65 CP014569_00021 - 156 0.1 12.6 0.0 2 3 0.00033 0.59 10.2 0.0 16 49 62 104 61 128 0.75 Helix-turn-helix domain HTH_19 PF12844.7 65 CP014569_00021 - 156 0.1 12.6 0.0 3 3 2.4 4.3e+03 -2.2 0.0 12 20 145 153 143 153 0.81 Helix-turn-helix domain AviRa PF11599.8 234 CP014569_00021 - 156 0.11 12.0 0.0 1 2 0.0022 4 6.8 0.0 171 197 13 41 7 49 0.78 RRNA methyltransferase AviRa AviRa PF11599.8 234 CP014569_00021 - 156 0.11 12.0 0.0 2 2 0.027 49 3.3 0.0 155 197 102 146 84 151 0.67 RRNA methyltransferase AviRa YcxB PF14317.6 61 CP014569_00021 - 156 0.16 11.7 2.8 1 2 0.018 33 4.3 0.4 13 31 12 30 4 47 0.82 YcxB-like protein YcxB PF14317.6 61 CP014569_00021 - 156 0.16 11.7 2.8 2 2 0.0023 4.1 7.2 0.1 3 30 108 135 107 142 0.90 YcxB-like protein DUF2569 PF10754.9 143 CP014569_00024 - 128 0.026 15.0 0.4 1 1 7e-06 0.042 14.3 0.4 11 98 7 95 5 121 0.70 Protein of unknown function (DUF2569) PMT_4TMC PF16192.5 199 CP014569_00024 - 128 0.06 12.9 0.3 1 1 1.4e-05 0.083 12.5 0.3 128 181 50 103 46 119 0.87 C-terminal four TMM region of protein-O-mannosyltransferase NiFe_hyd_3_EhaA PF17367.2 97 CP014569_00024 - 128 0.14 12.3 3.0 1 2 0.64 3.8e+03 -1.9 0.0 47 60 5 18 2 30 0.75 NiFe-hydrogenase-type-3 Eha complex subunit A NiFe_hyd_3_EhaA PF17367.2 97 CP014569_00024 - 128 0.14 12.3 3.0 2 2 1.7e-05 0.1 12.8 1.1 41 94 46 99 39 108 0.79 NiFe-hydrogenase-type-3 Eha complex subunit A SHE3 PF17078.5 228 CP014569_00025 - 108 0.0065 16.2 10.7 1 1 3e-06 0.0078 16.0 10.7 153 221 35 103 26 107 0.88 SWI5-dependent HO expression protein 3 F420_oxidored PF03807.17 97 CP014569_00025 - 108 0.009 16.6 0.5 1 1 4.3e-06 0.011 16.3 0.5 16 82 40 105 27 108 0.84 NADP oxidoreductase coenzyme F420-dependent SKIP_SNW PF02731.15 160 CP014569_00025 - 108 0.031 13.9 2.1 1 1 1.7e-05 0.042 13.5 2.1 81 151 15 84 13 88 0.93 SKIP/SNW domain EutB PF06751.11 435 CP014569_00025 - 108 0.037 12.8 0.6 1 1 1.5e-05 0.039 12.8 0.6 70 137 34 101 9 107 0.82 Ethanolamine ammonia lyase large subunit (EutB) FB_lectin PF07367.11 140 CP014569_00025 - 108 0.072 13.0 0.3 1 1 3.7e-05 0.094 12.7 0.3 73 136 19 82 9 85 0.83 Fungal fruit body lectin MCC-bdg_PDZ PF10506.9 65 CP014569_00025 - 108 0.13 12.3 6.4 1 2 0.17 4.3e+02 1.0 0.1 10 25 43 58 36 59 0.80 PDZ domain of MCC-2 bdg protein for Usher syndrome MCC-bdg_PDZ PF10506.9 65 CP014569_00025 - 108 0.13 12.3 6.4 2 2 3e-05 0.078 13.0 3.1 3 38 57 95 56 101 0.93 PDZ domain of MCC-2 bdg protein for Usher syndrome DUF737 PF05300.11 201 CP014569_00025 - 108 0.35 11.2 6.5 1 1 0.00017 0.43 10.9 6.5 117 173 28 83 24 94 0.89 Protein of unknown function (DUF737) COX8 PF02285.15 43 CP014569_00027 - 246 0.016 15.1 0.0 1 1 2e-06 0.036 13.9 0.0 4 39 85 120 82 120 0.91 Cytochrome oxidase c subunit VIII O-antigen_lig PF13425.6 468 CP014569_00028 - 195 0.0041 16.0 3.8 1 1 1e-06 0.0059 15.4 3.8 240 346 10 157 3 168 0.65 O-antigen ligase like membrane protein Insulin_TMD PF17870.1 47 CP014569_00028 - 195 0.035 14.2 1.3 1 2 5.9e-06 0.035 14.2 1.3 9 31 12 34 6 37 0.83 Insulin receptor trans-membrane segment Insulin_TMD PF17870.1 47 CP014569_00028 - 195 0.035 14.2 1.3 2 2 1.5 9.1e+03 -3.2 0.0 9 18 114 123 111 123 0.79 Insulin receptor trans-membrane segment TMEM51 PF15345.6 238 CP014569_00028 - 195 0.079 12.8 0.1 1 1 2.1e-05 0.13 12.1 0.1 62 127 17 81 5 130 0.73 Transmembrane protein 51 RRXRR PF14239.6 174 CP014569_00031 - 439 1.5e-55 187.8 5.1 1 1 4.5e-59 2e-55 187.3 5.1 1 174 2 177 2 177 0.98 RRXRR protein HNH_5 PF14279.6 56 CP014569_00031 - 439 4e-12 45.8 1.5 1 1 1.6e-15 7.1e-12 45.0 1.5 1 44 196 235 196 245 0.89 HNH endonuclease HNH PF01844.23 47 CP014569_00031 - 439 4.7e-09 36.3 3.1 1 1 2e-12 9e-09 35.4 3.1 1 44 196 234 196 236 0.93 HNH endonuclease HNH_4 PF13395.6 55 CP014569_00031 - 439 8.2e-09 35.2 0.1 1 1 5.3e-12 2.4e-08 33.8 0.1 16 50 201 235 186 238 0.82 HNH endonuclease DUF325 PF03804.13 73 CP014569_00032 - 309 0.17 11.9 0.9 1 2 2e-05 0.36 10.9 0.3 30 73 83 125 77 125 0.93 Viral proteins of unknown function DUF325 PF03804.13 73 CP014569_00032 - 309 0.17 11.9 0.9 2 2 0.42 7.6e+03 -3.0 0.0 32 43 174 185 163 192 0.67 Viral proteins of unknown function Yae1_N PF09811.9 39 CP014569_00033 - 211 0.41 10.4 1.9 1 2 3.3e-05 0.6 9.9 0.7 1 23 32 54 30 60 0.83 Essential protein Yae1, N terminal Yae1_N PF09811.9 39 CP014569_00033 - 211 0.41 10.4 1.9 2 2 0.13 2.3e+03 -1.6 0.0 30 37 66 73 64 75 0.75 Essential protein Yae1, N terminal DUF1411 PF07199.11 194 CP014569_00034 - 386 0.2 11.3 8.9 1 2 1.3e-06 0.024 14.3 4.5 28 168 131 272 125 286 0.76 Protein of unknown function (DUF1411) DUF1411 PF07199.11 194 CP014569_00034 - 386 0.2 11.3 8.9 2 2 0.18 3.3e+03 -2.4 0.1 68 95 342 373 311 379 0.51 Protein of unknown function (DUF1411) HdeA PF06411.11 92 CP014569_00035 - 143 0.057 13.6 0.2 1 1 4.8e-06 0.087 13.0 0.2 13 75 24 86 20 92 0.78 HdeA/HdeB family FAM76 PF16046.5 300 CP014569_00037 - 239 0.24 10.7 30.5 1 2 0.0082 37 3.5 1.6 257 298 19 60 9 62 0.88 FAM76 protein FAM76 PF16046.5 300 CP014569_00037 - 239 0.24 10.7 30.5 2 2 1.5e-05 0.067 12.5 21.6 177 292 99 212 61 222 0.59 FAM76 protein UCH PF00443.29 257 CP014569_00037 - 239 0.42 10.1 17.0 1 2 5.8e-06 0.026 14.0 2.2 73 129 10 67 2 91 0.77 Ubiquitin carboxyl-terminal hydrolase UCH PF00443.29 257 CP014569_00037 - 239 0.42 10.1 17.0 2 2 0.058 2.6e+02 0.9 7.4 100 136 102 142 74 200 0.76 Ubiquitin carboxyl-terminal hydrolase DUF4806 PF16064.5 90 CP014569_00037 - 239 0.55 10.6 10.9 1 2 5.4e-05 0.24 11.7 1.1 7 49 14 57 9 73 0.83 Domain of unknown function (DUF4806) DUF4806 PF16064.5 90 CP014569_00037 - 239 0.55 10.6 10.9 2 2 0.0094 42 4.5 1.1 13 39 168 194 160 204 0.81 Domain of unknown function (DUF4806) DUF4665 PF15679.5 99 CP014569_00037 - 239 2.5 8.7 34.7 1 3 0.00023 1 10.0 5.6 35 76 21 62 14 84 0.81 Domain of unknown function (DUF4665) DUF4665 PF15679.5 99 CP014569_00037 - 239 2.5 8.7 34.7 2 3 0.0043 19 5.9 6.6 37 97 88 150 74 152 0.77 Domain of unknown function (DUF4665) DUF4665 PF15679.5 99 CP014569_00037 - 239 2.5 8.7 34.7 3 3 0.026 1.2e+02 3.4 8.0 36 86 153 202 149 214 0.83 Domain of unknown function (DUF4665) Chlorosome_CsmC PF11098.8 139 CP014569_00038 - 161 0.0041 17.1 0.0 1 1 3.8e-06 0.0052 16.8 0.0 70 118 34 82 25 118 0.91 Chlorosome envelope protein C Tup_N PF08581.10 77 CP014569_00038 - 161 0.017 15.4 1.7 1 2 1.2e-05 0.017 15.4 1.7 28 61 22 55 11 66 0.89 Tup N-terminal Tup_N PF08581.10 77 CP014569_00038 - 161 0.017 15.4 1.7 2 2 0.85 1.2e+03 -0.1 4.6 27 67 90 98 58 124 0.47 Tup N-terminal CBP_BcsR PF10945.8 42 CP014569_00038 - 161 0.031 13.7 0.3 1 1 4.8e-05 0.067 12.7 0.3 2 27 32 57 31 58 0.93 Cellulose biosynthesis protein BcsR Spectrin_like PF18373.1 78 CP014569_00038 - 161 0.033 14.3 3.6 1 3 0.22 3.1e+02 1.5 0.0 25 42 13 30 10 37 0.82 Spectrin like domain Spectrin_like PF18373.1 78 CP014569_00038 - 161 0.033 14.3 3.6 2 3 0.00017 0.23 11.6 0.3 31 49 40 58 36 84 0.86 Spectrin like domain Spectrin_like PF18373.1 78 CP014569_00038 - 161 0.033 14.3 3.6 3 3 0.54 7.4e+02 0.3 0.1 26 36 90 100 61 115 0.69 Spectrin like domain APG6_N PF17675.1 133 CP014569_00038 - 161 0.042 14.4 6.1 1 2 0.00021 0.28 11.7 0.6 52 115 3 66 1 84 0.90 Apg6 coiled-coil region APG6_N PF17675.1 133 CP014569_00038 - 161 0.042 14.4 6.1 2 2 0.014 19 5.8 0.7 19 59 84 119 78 124 0.83 Apg6 coiled-coil region TMPIT PF07851.13 324 CP014569_00038 - 161 0.059 12.6 6.3 1 2 7e-05 0.097 11.9 2.1 27 88 16 77 1 86 0.83 TMPIT-like protein TMPIT PF07851.13 324 CP014569_00038 - 161 0.059 12.6 6.3 2 2 0.03 41 3.3 0.2 49 102 93 143 77 153 0.68 TMPIT-like protein DUF948 PF06103.11 89 CP014569_00038 - 161 0.099 12.9 2.4 1 2 0.00018 0.25 11.6 0.5 18 79 18 76 15 85 0.85 Bacterial protein of unknown function (DUF948) DUF948 PF06103.11 89 CP014569_00038 - 161 0.099 12.9 2.4 2 2 0.022 30 4.9 0.3 21 75 64 117 63 125 0.84 Bacterial protein of unknown function (DUF948) PSD3 PF07626.11 65 CP014569_00038 - 161 0.14 12.7 0.1 1 1 0.00016 0.23 12.0 0.1 5 38 90 124 89 130 0.75 Protein of unknown function (DUF1587) SKA2 PF16740.5 110 CP014569_00038 - 161 0.25 11.1 7.9 1 1 0.00051 0.71 9.7 6.6 4 93 21 116 18 132 0.78 Spindle and kinetochore-associated protein 2 NPV_P10 PF05531.12 75 CP014569_00038 - 161 0.53 10.8 6.0 1 1 0.0085 12 6.5 6.1 10 63 32 83 28 125 0.85 Nucleopolyhedrovirus P10 protein FliD_N PF02465.18 97 CP014569_00038 - 161 0.55 11.0 3.8 1 2 0.0093 13 6.6 0.2 22 58 20 57 5 86 0.77 Flagellar hook-associated protein 2 N-terminus FliD_N PF02465.18 97 CP014569_00038 - 161 0.55 11.0 3.8 2 2 0.019 26 5.6 0.4 6 40 94 129 90 136 0.84 Flagellar hook-associated protein 2 N-terminus DUF2203 PF09969.9 122 CP014569_00038 - 161 1.2 9.9 4.2 1 2 0.08 1.1e+02 3.5 0.1 48 80 21 53 4 58 0.69 Uncharacterized conserved protein (DUF2203) DUF2203 PF09969.9 122 CP014569_00038 - 161 1.2 9.9 4.2 2 2 0.0073 10 6.9 1.0 16 67 61 117 58 124 0.60 Uncharacterized conserved protein (DUF2203) ZapB PF06005.12 71 CP014569_00038 - 161 2.7 8.5 8.5 1 2 0.0061 8.5 6.9 8.2 3 67 18 102 16 119 0.93 Cell division protein ZapB ZapB PF06005.12 71 CP014569_00038 - 161 2.7 8.5 8.5 2 2 1.6 2.3e+03 -0.9 0.2 41 49 109 117 102 127 0.56 Cell division protein ZapB Phasin PF05597.11 126 CP014569_00039 - 208 0.17 11.9 9.3 1 3 1.3 3.2e+03 -1.9 0.0 79 96 20 41 4 66 0.64 Poly(hydroxyalcanoate) granule associated protein (phasin) Phasin PF05597.11 126 CP014569_00039 - 208 0.17 11.9 9.3 2 3 0.00027 0.68 9.9 1.9 52 107 88 143 76 148 0.82 Poly(hydroxyalcanoate) granule associated protein (phasin) Phasin PF05597.11 126 CP014569_00039 - 208 0.17 11.9 9.3 3 3 0.0039 9.9 6.2 0.2 53 94 158 199 147 205 0.79 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF948 PF06103.11 89 CP014569_00039 - 208 0.47 10.7 5.0 1 2 0.023 58 4.0 0.2 46 69 92 115 55 139 0.60 Bacterial protein of unknown function (DUF948) DUF948 PF06103.11 89 CP014569_00039 - 208 0.47 10.7 5.0 2 2 0.0011 2.7 8.3 0.8 46 87 161 207 155 208 0.60 Bacterial protein of unknown function (DUF948) DUF883 PF05957.13 94 CP014569_00039 - 208 0.47 11.1 2.2 1 2 0.066 1.7e+02 2.9 0.3 21 50 98 127 79 141 0.56 Bacterial protein of unknown function (DUF883) DUF883 PF05957.13 94 CP014569_00039 - 208 0.47 11.1 2.2 2 2 0.0026 6.7 7.4 0.1 4 64 161 199 140 207 0.51 Bacterial protein of unknown function (DUF883) MutS_III PF05192.18 191 CP014569_00039 - 208 0.56 10.4 5.4 1 1 0.00025 0.64 10.2 5.4 74 178 57 204 6 208 0.58 MutS domain III Bravo_FIGEY PF13882.6 88 CP014569_00039 - 208 1.2 10.5 7.1 1 2 3.4 8.6e+03 -1.8 0.0 49 64 34 49 13 56 0.64 Bravo-like intracellular region Bravo_FIGEY PF13882.6 88 CP014569_00039 - 208 1.2 10.5 7.1 2 2 0.00024 0.61 11.5 4.1 12 77 88 157 82 159 0.78 Bravo-like intracellular region YtxH PF12732.7 75 CP014569_00039 - 208 2.5 8.7 21.0 1 3 0.28 7.3e+02 0.8 0.2 29 58 17 46 5 66 0.67 YtxH-like protein YtxH PF12732.7 75 CP014569_00039 - 208 2.5 8.7 21.0 2 3 0.04 1e+02 3.5 5.6 24 70 89 135 86 142 0.75 YtxH-like protein YtxH PF12732.7 75 CP014569_00039 - 208 2.5 8.7 21.0 3 3 4.1e-05 0.11 13.1 2.6 29 64 166 205 158 208 0.51 YtxH-like protein HEPN_RES_NTD1 PF18870.1 129 CP014569_00039 - 208 4.2 7.6 8.3 1 3 0.72 1.8e+03 -1.0 0.1 98 114 13 29 6 44 0.79 HEPN/RES N-terminal domain 1 HEPN_RES_NTD1 PF18870.1 129 CP014569_00039 - 208 4.2 7.6 8.3 2 3 0.0029 7.5 6.8 0.4 53 104 82 133 56 135 0.84 HEPN/RES N-terminal domain 1 HEPN_RES_NTD1 PF18870.1 129 CP014569_00039 - 208 4.2 7.6 8.3 3 3 0.0069 18 5.6 0.3 44 85 138 183 121 196 0.78 HEPN/RES N-terminal domain 1 SLT PF01464.20 117 CP014569_00040 - 184 8.9e-12 44.7 0.0 1 1 2.4e-15 1.4e-11 44.0 0.0 2 101 26 166 25 178 0.92 Transglycosylase SLT domain Leukocidin PF07968.12 255 CP014569_00040 - 184 0.00012 22.1 0.2 1 1 3.4e-08 0.0002 21.3 0.2 165 232 26 89 16 111 0.77 Leukocidin/Hemolysin toxin family Glucosaminidase PF01832.20 87 CP014569_00040 - 184 0.2 12.2 2.1 1 1 4.5e-05 0.27 11.8 2.1 2 41 25 66 24 179 0.72 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AAA_22 PF13401.6 137 CP014569_00041 - 781 0.14 12.4 0.0 1 2 0.00038 6.7 7.0 0.0 6 28 373 395 369 407 0.88 AAA domain AAA_22 PF13401.6 137 CP014569_00041 - 781 0.14 12.4 0.0 2 2 0.013 2.4e+02 1.9 0.0 80 112 676 710 645 727 0.70 AAA domain DUF226 PF02890.14 139 CP014569_00042 - 620 0.017 15.1 0.9 1 3 0.16 2.9e+03 -1.8 0.1 81 106 13 38 5 48 0.63 Borrelia family of unknown function DUF226 DUF226 PF02890.14 139 CP014569_00042 - 620 0.017 15.1 0.9 2 3 9.4e-07 0.017 15.1 0.9 13 126 62 180 56 188 0.76 Borrelia family of unknown function DUF226 DUF226 PF02890.14 139 CP014569_00042 - 620 0.017 15.1 0.9 3 3 0.15 2.6e+03 -1.7 0.6 16 39 249 272 237 314 0.60 Borrelia family of unknown function DUF226 Y1_Tnp PF01797.16 121 CP014569_00043 - 151 1.5e-38 131.6 0.0 1 1 1.3e-42 2.3e-38 131.0 0.0 1 121 13 130 13 130 0.98 Transposase IS200 like OrfB_IS605 PF01385.19 120 CP014569_00044 - 366 1.2e-24 86.8 0.2 1 2 0.18 8.1e+02 0.2 2.7 57 96 53 91 27 107 0.73 Probable transposase OrfB_IS605 PF01385.19 120 CP014569_00044 - 366 1.2e-24 86.8 0.2 2 2 2.7e-28 1.2e-24 86.8 0.2 2 119 160 275 159 276 0.95 Probable transposase OrfB_Zn_ribbon PF07282.11 69 CP014569_00044 - 366 3.3e-18 65.4 1.3 1 2 3.3 1.5e+04 -4.0 0.1 3 11 99 107 99 108 0.84 Putative transposase DNA-binding domain OrfB_Zn_ribbon PF07282.11 69 CP014569_00044 - 366 3.3e-18 65.4 1.3 2 2 7.4e-22 3.3e-18 65.4 1.3 1 68 285 349 285 350 0.92 Putative transposase DNA-binding domain VPS28 PF03997.12 189 CP014569_00044 - 366 0.051 13.3 0.4 1 3 1.1e-05 0.051 13.3 0.4 144 187 46 92 12 93 0.77 VPS28 protein VPS28 PF03997.12 189 CP014569_00044 - 366 0.051 13.3 0.4 2 3 0.24 1.1e+03 -0.9 0.2 144 160 227 243 166 268 0.62 VPS28 protein VPS28 PF03997.12 189 CP014569_00044 - 366 0.051 13.3 0.4 3 3 0.064 2.9e+02 1.0 0.2 113 167 238 290 233 310 0.75 VPS28 protein HTH_OrfB_IS605 PF12323.8 47 CP014569_00044 - 366 0.073 12.6 0.2 1 1 4.5e-05 0.2 11.2 0.2 1 44 1 42 1 45 0.90 Helix-turn-helix domain CshA_NR2 PF18651.1 330 CP014569_00046 - 297 0.099 11.8 0.2 1 2 0.094 1.7e+03 -2.1 0.1 43 87 39 81 35 111 0.60 Surface adhesin CshA non-repetitive domain 2 CshA_NR2 PF18651.1 330 CP014569_00046 - 297 0.099 11.8 0.2 2 2 1.4e-05 0.24 10.5 0.0 235 284 174 226 162 233 0.82 Surface adhesin CshA non-repetitive domain 2 DUF3603 PF12227.8 214 CP014569_00048 - 156 0.3 10.4 3.1 1 2 1.5e-05 0.27 10.5 1.2 131 186 7 62 1 73 0.91 Protein of unknown function (DUF3603) DUF3603 PF12227.8 214 CP014569_00048 - 156 0.3 10.4 3.1 2 2 0.049 8.8e+02 -1.0 0.0 75 114 107 146 99 152 0.82 Protein of unknown function (DUF3603) DUF2357 PF09823.9 251 CP014569_00049 - 251 0.098 11.9 0.0 1 1 1.4e-05 0.12 11.6 0.0 113 186 45 117 9 153 0.73 Domain of unknown function (DUF2357) ThylakoidFormat PF11264.8 216 CP014569_00049 - 251 0.24 11.0 2.1 1 1 0.0002 1.8 8.2 2.1 152 192 107 147 38 161 0.91 Thylakoid formation protein DUF4214 PF13946.6 72 CP014569_00051 - 1765 0.0004 20.4 4.0 1 4 0.29 5.1e+03 -2.4 0.0 7 22 705 719 701 725 0.78 Domain of unknown function (DUF4214) DUF4214 PF13946.6 72 CP014569_00051 - 1765 0.0004 20.4 4.0 2 4 0.61 1.1e+04 -3.4 0.0 20 31 1268 1279 1257 1281 0.59 Domain of unknown function (DUF4214) DUF4214 PF13946.6 72 CP014569_00051 - 1765 0.0004 20.4 4.0 3 4 2.4e-08 0.00042 20.3 0.1 24 57 1611 1644 1592 1651 0.86 Domain of unknown function (DUF4214) DUF4214 PF13946.6 72 CP014569_00051 - 1765 0.0004 20.4 4.0 4 4 0.36 6.5e+03 -2.7 0.1 46 64 1721 1739 1720 1744 0.84 Domain of unknown function (DUF4214) DUF3784 PF12650.7 94 CP014569_00052 - 64 0.0045 17.2 0.7 1 1 8.1e-07 0.0048 17.1 0.7 45 89 10 54 3 59 0.90 Domain of unknown function (DUF3784) TMCCDC2 PF15844.5 171 CP014569_00052 - 64 0.021 14.7 0.7 1 1 3.6e-06 0.021 14.7 0.7 44 85 12 54 4 64 0.78 Transmembrane and coiled-coil domain-containing protein 2 DUF1240 PF06836.12 95 CP014569_00052 - 64 0.052 14.1 1.8 1 2 0.099 5.9e+02 1.1 0.2 44 64 16 36 3 38 0.46 Protein of unknown function (DUF1240) DUF1240 PF06836.12 95 CP014569_00052 - 64 0.052 14.1 1.8 2 2 2.2e-05 0.13 12.8 1.8 47 74 34 61 11 63 0.86 Protein of unknown function (DUF1240) DUF2321 PF10083.9 156 CP014569_00053 - 71 0.05 13.2 0.1 1 1 2.9e-06 0.053 13.2 0.1 64 94 40 70 24 71 0.83 Uncharacterized protein conserved in bacteria (DUF2321) Phage_cap_P2 PF05125.12 326 CP014569_00058 - 311 9.9e-08 31.3 2.5 1 1 2.2e-10 2e-06 27.0 2.5 15 210 15 198 4 290 0.69 Phage major capsid protein, P2 family Tctex-1 PF03645.13 103 CP014569_00058 - 311 0.014 15.7 1.3 1 2 1.5e-05 0.14 12.4 0.0 31 100 64 131 11 133 0.80 Tctex-1 family Tctex-1 PF03645.13 103 CP014569_00058 - 311 0.014 15.7 1.3 2 2 0.079 7e+02 0.5 0.2 21 43 165 187 144 206 0.76 Tctex-1 family Peptidase_S78_2 PF14550.6 120 CP014569_00059 - 245 7.4e-34 116.4 0.1 1 1 4e-37 1.2e-33 115.8 0.1 3 119 40 156 38 157 0.92 Putative phage serine protease XkdF Holin_BhlA PF10960.8 70 CP014569_00059 - 245 0.026 14.5 1.7 1 1 2e-05 0.061 13.3 1.7 33 70 183 223 172 223 0.82 BhlA holin family Abi_C PF14355.6 83 CP014569_00059 - 245 0.059 13.5 0.7 1 3 0.67 2e+03 -1.0 0.0 13 43 57 86 54 87 0.78 Abortive infection C-terminus Abi_C PF14355.6 83 CP014569_00059 - 245 0.059 13.5 0.7 2 3 0.0042 13 6.0 0.0 9 43 145 177 138 181 0.81 Abortive infection C-terminus Abi_C PF14355.6 83 CP014569_00059 - 245 0.059 13.5 0.7 3 3 0.017 50 4.1 0.1 22 45 188 211 178 224 0.86 Abortive infection C-terminus DUF2203 PF09969.9 122 CP014569_00059 - 245 0.26 12.0 1.8 1 2 1.2 3.7e+03 -1.4 0.0 65 84 143 162 119 185 0.62 Uncharacterized conserved protein (DUF2203) DUF2203 PF09969.9 122 CP014569_00059 - 245 0.26 12.0 1.8 2 2 0.00016 0.46 11.2 0.5 6 47 195 236 192 242 0.84 Uncharacterized conserved protein (DUF2203) DUF4391 PF14335.6 242 CP014569_00059 - 245 0.29 10.8 5.2 1 2 0.2 6e+02 -0.1 0.0 107 161 37 92 25 97 0.66 Domain of unknown function (DUF4391) DUF4391 PF14335.6 242 CP014569_00059 - 245 0.29 10.8 5.2 2 2 0.00022 0.66 9.6 3.7 195 226 201 232 178 237 0.91 Domain of unknown function (DUF4391) SPT16 PF08644.11 151 CP014569_00059 - 245 0.58 10.3 3.5 1 2 0.18 5.4e+02 0.7 0.1 86 93 39 46 12 105 0.58 FACT complex subunit (SPT16/CDC68) SPT16 PF08644.11 151 CP014569_00059 - 245 0.58 10.3 3.5 2 2 0.00029 0.87 9.8 0.8 49 106 180 237 131 244 0.84 FACT complex subunit (SPT16/CDC68) Prok-TraM PF09228.10 102 CP014743_00001 - 298 0.085 13.2 0.0 1 1 2e-05 0.18 12.2 0.0 13 93 35 115 24 120 0.89 Prokaryotic Transcriptional repressor TraM Flu_B_M2 PF04772.12 109 CP014743_00001 - 298 3 8.1 11.1 1 3 2e-05 0.18 12.0 0.3 43 102 80 139 62 142 0.90 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 CP014743_00001 - 298 3 8.1 11.1 2 3 0.017 1.5e+02 2.6 2.9 26 87 134 195 133 210 0.87 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 CP014743_00001 - 298 3 8.1 11.1 3 3 0.26 2.3e+03 -1.2 0.0 73 104 235 266 227 270 0.68 Influenza B matrix protein 2 (BM2) TagA PF12561.8 99 CP014743_00002 - 210 1.1 9.7 3.4 1 2 0.00094 17 5.9 0.7 31 90 68 127 55 133 0.81 ToxR activated gene A lipoprotein domain TagA PF12561.8 99 CP014743_00002 - 210 1.1 9.7 3.4 2 2 0.0027 49 4.4 0.1 63 88 184 209 166 210 0.84 ToxR activated gene A lipoprotein domain DUF4299 PF14132.6 301 CP014743_00003 - 116 3.2e-08 33.4 0.1 1 1 6.2e-12 3.7e-08 33.2 0.1 189 300 12 110 5 111 0.85 Domain of unknown function (DUF4299) A2M PF00207.22 92 CP014743_00003 - 116 0.11 12.3 0.0 1 1 2.6e-05 0.16 11.9 0.0 17 56 49 89 36 94 0.81 Alpha-2-macroglobulin family XPG_I PF00867.18 94 CP014743_00003 - 116 0.13 12.7 0.0 1 1 2.6e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region AHH PF14412.6 114 CP014743_00005 - 259 5.3e-16 58.7 1.4 1 1 1.1e-19 9.6e-16 57.9 1.4 10 113 155 241 148 242 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH RRF PF01765.19 162 CP014743_00005 - 259 0.12 12.3 4.7 1 2 1.8e-05 0.16 11.9 0.1 124 153 163 193 112 199 0.86 Ribosome recycling factor RRF PF01765.19 162 CP014743_00005 - 259 0.12 12.3 4.7 2 2 0.025 2.3e+02 1.7 1.1 121 146 215 242 207 256 0.69 Ribosome recycling factor Glyco_hydro_59 PF02057.15 294 CP014743_00007 - 287 0.022 14.0 1.2 1 1 2.4e-06 0.043 13.1 1.2 109 165 106 159 99 178 0.87 Glycosyl hydrolase family 59 Nucleoside_tran PF01733.18 309 CP014743_00009 - 289 0.15 11.4 2.7 1 1 4.6e-05 0.28 10.5 2.7 71 192 10 129 3 134 0.66 Nucleoside transporter Turandot PF07240.11 81 CP014743_00009 - 289 0.19 11.7 1.3 1 2 0.75 4.5e+03 -2.3 0.0 17 40 25 48 22 54 0.61 Stress-inducible humoral factor Turandot Turandot PF07240.11 81 CP014743_00009 - 289 0.19 11.7 1.3 2 2 8e-05 0.48 10.4 0.6 2 28 247 273 246 288 0.77 Stress-inducible humoral factor Turandot Sigma70_ner PF04546.13 204 CP014743_00009 - 289 0.2 11.5 6.4 1 2 0.03 1.8e+02 1.9 0.4 16 78 33 83 20 120 0.46 Sigma-70, non-essential region Sigma70_ner PF04546.13 204 CP014743_00009 - 289 0.2 11.5 6.4 2 2 1.7e-05 0.1 12.4 1.0 88 125 238 276 228 285 0.90 Sigma-70, non-essential region Rapsyn_N PF10579.9 80 CP014743_00011 - 358 0.53 10.4 3.8 1 3 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 CP014743_00011 - 358 0.53 10.4 3.8 2 3 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 CP014743_00011 - 358 0.53 10.4 3.8 3 3 0.24 4.3e+03 -2.1 0.1 19 34 340 355 329 356 0.74 Rapsyn N-terminal myristoylation and linker region DUF2768 PF10966.8 58 CP014743_00012 - 114 0.0086 16.5 0.2 1 2 1.9e-06 0.0086 16.5 0.2 22 57 37 72 35 72 0.95 Protein of unknown function (DUF2768) DUF2768 PF10966.8 58 CP014743_00012 - 114 0.0086 16.5 0.2 2 2 0.4 1.8e+03 -0.5 1.3 6 13 96 103 79 108 0.53 Protein of unknown function (DUF2768) DiS_P_DiS PF06750.13 84 CP014743_00012 - 114 0.027 14.6 0.4 1 1 1.2e-05 0.054 13.6 0.4 29 73 6 50 2 59 0.84 Bacterial Peptidase A24 N-terminal domain DZR PF12773.7 49 CP014743_00012 - 114 0.028 14.4 0.3 1 1 8.3e-06 0.037 14.0 0.3 13 37 5 38 2 45 0.88 Double zinc ribbon zinc_ribbon_4 PF13717.6 36 CP014743_00012 - 114 0.14 12.1 4.3 1 2 0.072 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP014743_00012 - 114 0.14 12.1 4.3 2 2 3.5e-05 0.16 12.0 0.3 3 16 30 43 29 47 0.86 zinc-ribbon domain Importin_rep PF18773.1 40 CP014743_00013 - 260 0.018 14.7 0.1 1 1 6.7e-06 0.04 13.6 0.1 16 27 231 242 226 249 0.90 Importin 13 repeat DUF327 PF03885.13 143 CP014743_00013 - 260 0.075 13.0 0.1 1 3 0.41 2.5e+03 -1.7 0.1 97 109 43 55 22 76 0.50 Protein of unknown function (DUF327) DUF327 PF03885.13 143 CP014743_00013 - 260 0.075 13.0 0.1 2 3 0.96 5.7e+03 -2.8 0.0 22 24 140 142 116 165 0.49 Protein of unknown function (DUF327) DUF327 PF03885.13 143 CP014743_00013 - 260 0.075 13.0 0.1 3 3 1.3e-05 0.075 13.0 0.1 48 85 217 254 191 258 0.89 Protein of unknown function (DUF327) BLOC1_2 PF10046.9 96 CP014743_00013 - 260 0.94 9.8 4.4 1 3 2.1 1.2e+04 -3.4 0.1 38 61 48 71 47 73 0.65 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP014743_00013 - 260 0.94 9.8 4.4 2 3 4.3e-05 0.26 11.6 0.4 22 75 115 172 110 179 0.87 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP014743_00013 - 260 0.94 9.8 4.4 3 3 0.81 4.8e+03 -2.1 0.0 70 79 245 254 228 258 0.43 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GPD PF05954.11 304 CP014743_00014 - 833 5.9e-18 65.2 0.0 1 1 1e-21 9.4e-18 64.5 0.0 22 281 73 360 45 376 0.76 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 CP014743_00014 - 833 0.11 12.2 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 CP014743_00014 - 833 0.11 12.2 0.0 2 2 0.00042 3.8 7.2 0.0 19 49 456 486 447 513 0.81 TCL1/MTCP1 family T6SS_TssG PF06996.11 299 CP014743_00015 - 302 3.5e-47 161.1 0.0 1 1 2.2e-51 3.9e-47 160.9 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG T6SS_TssF PF05947.12 603 CP014743_00016 - 573 2.2e-110 370.0 0.0 1 1 1.4e-114 2.5e-110 369.8 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF GPW_gp25 PF04965.14 95 CP014743_00017 - 130 2.2e-09 36.9 0.0 1 1 4.8e-13 2.9e-09 36.6 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 CP014743_00017 - 130 0.021 14.7 0.3 1 1 4.5e-06 0.027 14.3 0.3 94 159 21 87 5 92 0.87 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 CP014743_00017 - 130 0.072 12.6 0.2 1 2 2.9e-05 0.17 11.3 0.1 82 121 5 46 1 64 0.84 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 CP014743_00017 - 130 0.072 12.6 0.2 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 422 CP014743_00018 - 484 6e-170 565.6 0.0 1 1 7.9e-174 7.1e-170 565.3 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 CP014743_00018 - 484 0.33 11.0 2.6 1 4 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 CP014743_00018 - 484 0.33 11.0 2.6 2 4 1.5 1.4e+04 -3.9 0.0 103 117 130 143 127 147 0.66 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 CP014743_00018 - 484 0.33 11.0 2.6 3 4 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 CP014743_00018 - 484 0.33 11.0 2.6 4 4 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 155 CP014743_00019 - 161 6.4e-52 175.5 3.9 1 1 8e-56 7.2e-52 175.3 3.9 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 CP014743_00019 - 161 0.14 10.8 0.0 1 1 1.8e-05 0.16 10.5 0.0 171 227 55 111 40 127 0.90 Chitin synthase T6SS_VasJ PF16989.5 255 CP014743_00020 - 411 1.2e-12 47.9 0.0 1 1 2.9e-16 1.7e-12 47.4 0.0 3 153 172 319 170 404 0.84 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 CP014743_00020 - 411 0.00013 22.0 0.2 1 2 1.3e-07 0.00079 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 CP014743_00020 - 411 0.00013 22.0 0.2 2 2 0.23 1.4e+03 -0.6 0.0 47 71 181 205 158 208 0.83 ImpA, N-terminal, type VI secretion system PX PF00787.24 113 CP014743_00020 - 411 0.0034 17.4 13.8 1 3 9.9e-06 0.059 13.3 1.9 31 111 33 126 19 127 0.76 PX domain PX PF00787.24 113 CP014743_00020 - 411 0.0034 17.4 13.8 2 3 0.00062 3.7 7.6 0.2 16 112 151 271 128 272 0.68 PX domain PX PF00787.24 113 CP014743_00020 - 411 0.0034 17.4 13.8 3 3 0.038 2.3e+02 1.8 0.7 22 97 312 392 292 400 0.70 PX domain T6SS-SciN PF12790.7 120 CP014743_00021 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 428 CP014743_00022 - 465 4.7e-112 374.8 0.0 1 1 3.1e-116 5.5e-112 374.6 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 205 CP014743_00023 - 257 3.6e-35 121.5 0.0 1 1 2.3e-39 4.2e-35 121.4 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_HCP PF05638.12 129 CP014743_00024 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 259 CP014743_00025 - 1175 6.2e-41 140.5 0.0 1 1 4.1e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 CP014743_00025 - 1175 5.9e-40 137.1 0.5 1 1 4.1e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 CP014743_00025 - 1175 8.2e-27 94.5 2.1 1 1 4.9e-30 1.3e-26 93.9 2.1 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 CP014743_00025 - 1175 0.0003 20.7 0.0 1 2 8.9e-06 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 CP014743_00025 - 1175 0.0003 20.7 0.0 2 2 0.047 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 CP014743_00025 - 1175 0.0011 19.0 0.1 1 2 1.7e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 CP014743_00025 - 1175 0.0011 19.0 0.1 2 2 4.1 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 CP014743_00025 - 1175 0.0041 16.8 4.8 1 3 1.4e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 CP014743_00025 - 1175 0.0041 16.8 4.8 2 3 0.13 3.4e+02 0.8 0.0 41 77 451 487 432 583 0.80 O-Antigen ligase Wzy_C PF04932.15 155 CP014743_00025 - 1175 0.0041 16.8 4.8 3 3 0.076 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 CP014743_00025 - 1175 0.055 13.2 0.1 1 2 0.00017 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 CP014743_00025 - 1175 0.055 13.2 0.1 2 2 0.76 1.9e+03 -1.3 0.0 22 37 841 856 831 870 0.75 P-loop containing region of AAA domain FHA PF00498.26 69 CP014743_00026 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 CP014743_00026 - 299 0.0007 19.9 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 CP014743_00026 - 299 0.0007 19.9 0.0 2 2 0.23 1.4e+03 -0.3 0.0 31 57 199 225 198 231 0.89 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 CP014743_00026 - 299 0.05 14.0 3.1 1 2 0.044 2.6e+02 2.1 0.1 18 58 107 147 105 150 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 CP014743_00026 - 299 0.05 14.0 3.1 2 2 7.4e-05 0.44 11.0 0.9 21 82 151 212 146 218 0.92 Ferredoxin-fold anticodon binding domain DUF3870 PF12986.7 94 CP014743_00027 - 410 0.098 12.9 0.0 1 1 1.3e-05 0.22 11.7 0.0 11 62 4 58 1 70 0.79 Domain of unknown function (DUF3870) DUF2459 PF09601.10 171 CP014743_00030 - 432 0.053 13.3 1.1 1 2 1.3e-05 0.12 12.2 0.1 87 163 131 199 119 201 0.72 Protein of unknown function (DUF2459) DUF2459 PF09601.10 171 CP014743_00030 - 432 0.053 13.3 1.1 2 2 0.32 2.8e+03 -2.1 0.1 143 143 289 289 239 346 0.63 Protein of unknown function (DUF2459) BLOC1_2 PF10046.9 96 CP014743_00030 - 432 0.1 12.9 2.0 1 2 2.8e-05 0.25 11.7 1.0 44 95 263 314 260 315 0.94 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP014743_00030 - 432 0.1 12.9 2.0 2 2 2 1.8e+04 -4.1 0.0 20 30 349 359 345 364 0.58 Biogenesis of lysosome-related organelles complex-1 subunit 2 Put_DNA-bind_N PF06971.13 49 CP014743_00031 - 141 0.016 15.2 0.0 1 1 1.5e-06 0.027 14.5 0.0 11 34 4 27 3 30 0.95 Putative DNA-binding protein N-terminus Toprim_3 PF13362.6 95 CP014743_00032 - 409 2.4e-08 34.2 0.1 1 2 1.4 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 CP014743_00032 - 409 2.4e-08 34.2 0.1 2 2 1.4e-11 6.4e-08 32.9 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 CP014743_00032 - 409 0.017 15.4 0.2 1 2 0.024 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 CP014743_00032 - 409 0.017 15.4 0.2 2 2 0.00027 1.2 9.4 0.0 15 83 283 359 277 382 0.82 Retrotransposon gag protein DUF2315 PF10231.9 123 CP014743_00032 - 409 0.023 14.8 6.8 1 3 0.00028 1.3 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP014743_00032 - 409 0.023 14.8 6.8 2 3 0.0016 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP014743_00032 - 409 0.023 14.8 6.8 3 3 1.3 5.9e+03 -2.7 0.0 20 90 355 373 339 384 0.54 Apoptogenic protein 1 5_3_exonuc PF01367.20 97 CP014743_00032 - 409 0.25 12.0 1.7 1 2 0.62 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP014743_00032 - 409 0.25 12.0 1.7 2 2 0.00012 0.53 10.9 0.2 15 81 322 384 321 401 0.72 5'-3' exonuclease, C-terminal SAM fold NYN PF01936.18 147 CP014743_00034 - 180 1.1e-09 39.0 0.0 1 1 2e-13 1.2e-09 38.8 0.0 60 123 74 146 15 161 0.80 NYN domain Peroxin-22 PF12827.7 113 CP014743_00034 - 180 0.004 17.0 0.6 1 1 1.3e-06 0.0079 16.1 0.6 25 105 81 162 46 169 0.76 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 CP014743_00034 - 180 0.029 15.0 0.0 1 1 8.3e-06 0.049 14.2 0.0 61 103 100 142 77 142 0.87 PIN domain PTS-HPr PF00381.19 82 CP014743_00035 - 44 0.17 12.1 0.0 1 1 1.1e-05 0.19 12.0 0.0 34 61 13 39 2 43 0.75 PTS HPr component phosphorylation site RHH_7 PF16777.5 74 CP014743_00036 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 CP014743_00036 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal AAA_31 PF13614.6 177 CP014743_00037 - 186 6.9e-05 22.8 0.5 1 2 2.1e-07 0.00093 19.2 0.1 3 26 2 25 1 31 0.91 AAA domain AAA_31 PF13614.6 177 CP014743_00037 - 186 6.9e-05 22.8 0.5 2 2 0.04 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 CP014743_00037 - 186 0.001 19.1 0.5 1 1 1.9e-06 0.0086 16.1 0.5 1 55 3 89 3 167 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP014743_00037 - 186 0.014 14.8 0.0 1 1 4.2e-06 0.019 14.4 0.0 17 109 69 171 61 180 0.77 short chain dehydrogenase ParA PF10609.9 246 CP014743_00037 - 186 0.17 11.3 0.0 1 1 5.9e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 CP014743_00038 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP014743_00038 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 CP014743_00039 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP014743_00039 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP014743_00039 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP014743_00039 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP014743_00039 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP014743_00039 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 CP014743_00040 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 CP014743_00040 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP014743_00040 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 CP014743_00040 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 CP014743_00040 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 CP014743_00040 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 CP014743_00040 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP014743_00040 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP014743_00040 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 CP014743_00041 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CP014743_00041 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain CtsR_C PF17727.1 72 CP014743_00042 - 120 0.047 13.8 0.3 1 2 0.00025 4.4 7.5 0.0 3 38 25 60 22 67 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP014743_00042 - 120 0.047 13.8 0.3 2 2 0.0022 40 4.4 0.0 28 48 68 88 65 102 0.85 CtsR C-terminal dimerization domain W2 PF02020.18 79 CP014743_00043 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 CP014743_00043 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 CP014743_00043 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Asp-B-Hydro_N PF05279.11 243 CP014743_00045 - 114 2.9 7.9 12.2 1 1 0.00019 3.4 7.7 12.2 114 210 6 104 3 113 0.78 Aspartyl beta-hydroxylase N-terminal region GTP_EFTU PF00009.27 194 CP014743_00046 - 639 8.1e-59 198.4 0.4 1 1 5.7e-62 1.1e-58 198.0 0.4 2 191 2 237 1 240 0.93 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP014743_00046 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP014743_00046 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP014743_00046 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP014743_00046 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP014743_00046 - 639 1.8e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP014743_00046 - 639 0.00029 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP014743_00046 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP014743_00046 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP014743_00046 - 639 0.047 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 CP014743_00048 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP014743_00048 - 473 0.022 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain Topoisom_bac PF01131.20 413 CP014743_00049 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP014743_00049 - 730 5.6e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP014743_00049 - 730 5.6e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 CP014743_00049 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP014743_00049 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP014743_00049 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP014743_00049 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP014743_00049 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CP014743_00049 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP014743_00049 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CP014743_00049 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP014743_00049 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 CP014743_00049 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 CP014743_00049 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 CP014743_00049 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP014743_00049 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CP014743_00049 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP014743_00049 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 CP014743_00049 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 CP014743_00049 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP014743_00049 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 CP014743_00049 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP014743_00049 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP014743_00049 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 CP014743_00049 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 CP014743_00049 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 CP014743_00049 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP014743_00049 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 CP014743_00049 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 CP014743_00049 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 CP014743_00049 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 CP014743_00049 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 CP014743_00049 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 CP014743_00049 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 CP014743_00050 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP014743_00050 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 CP014743_00051 - 265 0.038 13.8 0.4 1 2 0.9 5.4e+03 -2.9 0.1 129 153 22 46 15 49 0.68 PRELI-like family PRELI PF04707.14 157 CP014743_00051 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 CP014743_00051 - 265 0.077 11.7 0.0 1 1 1.8e-05 0.1 11.2 0.0 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 CP014743_00051 - 265 0.74 9.8 5.2 1 3 0.4 2.4e+03 -1.6 0.1 113 134 21 42 5 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP014743_00051 - 265 0.74 9.8 5.2 2 3 7.4e-05 0.44 10.5 1.9 42 108 120 185 89 189 0.81 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP014743_00051 - 265 0.74 9.8 5.2 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 CP014743_00052 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 CP014743_00053 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 CP014743_00053 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 CP014743_00053 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CP014743_00053 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CP014743_00053 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 CP014743_00054 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP014743_00054 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP014743_00054 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP014743_00054 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CP014743_00054 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Phage_pRha PF09669.10 88 CP014743_00055 - 221 3.4e-21 75.6 0.1 1 2 1.9e-25 3.4e-21 75.6 0.1 2 88 38 125 37 125 0.92 Phage regulatory protein Rha (Phage_pRha) Phage_pRha PF09669.10 88 CP014743_00055 - 221 3.4e-21 75.6 0.1 2 2 0.21 3.7e+03 -1.4 0.4 38 45 198 209 140 220 0.65 Phage regulatory protein Rha (Phage_pRha) T2SSE PF00437.20 273 CP014743_00056 - 332 6.4e-54 182.8 0.0 1 1 1.3e-56 7.4e-54 182.6 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP014743_00056 - 332 6.1e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP014743_00056 - 332 0.00016 21.1 0.0 1 1 4.3e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP014743_00056 - 332 0.00022 20.8 0.0 1 1 6.5e-07 0.00038 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP014743_00056 - 332 0.0014 18.9 0.0 1 1 4.4e-06 0.0026 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CP014743_00056 - 332 0.0026 17.5 0.0 1 1 9.1e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CP014743_00056 - 332 0.003 17.3 0.0 1 1 8.2e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CP014743_00056 - 332 0.0037 17.3 0.0 1 1 1.3e-05 0.0073 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP014743_00056 - 332 0.0049 15.9 0.0 1 1 1.2e-05 0.0072 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CP014743_00056 - 332 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP014743_00056 - 332 0.0087 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP014743_00056 - 332 0.0088 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CP014743_00056 - 332 0.018 14.8 0.0 1 1 6.3e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CP014743_00056 - 332 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 244 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CP014743_00056 - 332 0.022 13.7 0.0 1 1 5.8e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP014743_00056 - 332 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CP014743_00056 - 332 0.024 14.4 0.0 1 1 9.2e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CP014743_00056 - 332 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CP014743_00056 - 332 0.035 13.5 0.0 1 1 9.7e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CP014743_00056 - 332 0.037 14.4 0.0 1 1 0.00018 0.11 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CP014743_00056 - 332 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP014743_00056 - 332 0.039 13.2 0.0 1 1 0.00012 0.069 12.4 0.0 14 49 158 193 145 207 0.83 Zeta toxin PRK PF00485.18 197 CP014743_00056 - 332 0.052 13.3 0.0 1 1 0.00019 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP014743_00056 - 332 0.063 11.9 0.0 1 1 0.00015 0.086 11.4 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP014743_00056 - 332 0.065 13.6 0.0 1 1 0.00017 0.1 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CP014743_00056 - 332 0.085 12.8 0.4 1 1 0.00039 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CP014743_00056 - 332 0.089 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 CP014743_00056 - 332 0.11 12.4 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP014743_00056 - 332 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP014743_00056 - 332 0.2 11.4 0.0 1 1 0.00054 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CP014743_00056 - 332 0.29 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 CP014743_00056 - 332 0.29 11.6 3.1 2 2 0.00055 0.32 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 CP014743_00057 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP014743_00057 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 CP014743_00058 - 295 6.2e-55 186.2 1.7 1 1 1.1e-58 1e-54 185.5 1.7 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CP014743_00058 - 295 0.082 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CP014743_00058 - 295 0.082 12.7 0.3 2 2 1.1 9.7e+03 -3.7 0.1 50 62 130 142 124 149 0.68 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 CP014743_00059 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CP014743_00059 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 CP014743_00060 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CP014743_00060 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 CP014743_00061 - 330 2.7e-29 102.5 30.5 1 1 3e-33 2.7e-29 102.5 30.5 1 214 38 250 38 251 0.92 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP014743_00061 - 330 0.21 11.4 1.5 1 2 0.13 1.2e+03 -0.6 0.1 38 65 68 101 59 114 0.50 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP014743_00061 - 330 0.21 11.4 1.5 2 2 7.3e-05 0.65 9.8 0.1 29 81 232 286 201 298 0.76 T-cell leukemia translocation-altered T4SS PF07996.11 197 CP014743_00062 - 328 1.9e-28 100.2 13.4 1 1 1e-31 2.7e-28 99.7 13.4 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 CP014743_00062 - 328 0.0072 16.4 1.8 1 3 1 2.6e+03 -1.4 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP014743_00062 - 328 0.0072 16.4 1.8 2 3 8.3e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP014743_00062 - 328 0.0072 16.4 1.8 3 3 1.4 3.7e+03 -1.9 0.0 62 79 302 319 292 327 0.75 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CP014743_00062 - 328 0.0092 16.7 6.0 1 2 0.046 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP014743_00062 - 328 0.0092 16.7 6.0 2 2 3.6e-06 0.0092 16.7 6.0 49 125 225 315 205 322 0.78 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 CP014743_00062 - 328 0.072 13.8 1.0 1 2 2.2 5.8e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP014743_00062 - 328 0.072 13.8 1.0 2 2 2.8e-05 0.072 13.8 1.0 32 84 209 270 199 295 0.83 von Willebrand factor type A domain Phage_holin_6_1 PF09682.10 101 CP014743_00062 - 328 0.13 12.7 8.7 1 2 0.00011 0.27 11.7 0.3 4 62 77 136 75 154 0.81 Bacteriophage holin of superfamily 6 (Holin_LLH) Phage_holin_6_1 PF09682.10 101 CP014743_00062 - 328 0.13 12.7 8.7 2 2 0.02 51 4.4 2.4 36 90 268 323 251 327 0.83 Bacteriophage holin of superfamily 6 (Holin_LLH) DUF3752 PF12572.8 152 CP014743_00062 - 328 2.3 8.7 8.3 1 2 0.0038 9.6 6.7 0.3 21 49 106 136 98 152 0.70 Protein of unknown function (DUF3752) DUF3752 PF12572.8 152 CP014743_00062 - 328 2.3 8.7 8.3 2 2 0.012 31 5.1 2.6 33 106 233 320 218 328 0.76 Protein of unknown function (DUF3752) WXG100 PF06013.12 86 CP014743_00062 - 328 7.2 6.9 12.9 1 3 0.25 6.5e+02 0.7 0.8 7 38 112 143 102 186 0.61 Proteins of 100 residues with WXG WXG100 PF06013.12 86 CP014743_00062 - 328 7.2 6.9 12.9 2 3 0.00039 1 9.7 0.7 48 85 226 263 223 264 0.86 Proteins of 100 residues with WXG WXG100 PF06013.12 86 CP014743_00062 - 328 7.2 6.9 12.9 3 3 0.04 1e+02 3.2 0.3 27 65 275 313 266 322 0.87 Proteins of 100 residues with WXG IF2_N PF04760.15 54 CP014743_00063 - 91 6.5e-05 22.7 5.8 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP014743_00063 - 91 6.5e-05 22.7 5.8 2 2 0.0075 34 4.4 0.1 31 53 57 79 56 80 0.87 Translation initiation factor IF-2, N-terminal region HTH_16 PF12645.7 65 CP014743_00063 - 91 0.013 15.5 1.9 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP014743_00063 - 91 0.013 15.5 1.9 2 2 2.8e-05 0.13 12.4 0.3 15 54 44 82 40 85 0.87 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP014743_00063 - 91 0.029 15.1 0.5 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP014743_00063 - 91 0.029 15.1 0.5 2 2 0.014 63 4.4 0.0 29 51 69 91 64 91 0.83 Rv0623-like transcription factor FliG_N PF14842.6 104 CP014743_00063 - 91 0.039 14.5 1.0 1 1 1e-05 0.046 14.3 1.0 21 86 9 80 1 85 0.89 FliG N-terminal domain SSB PF00436.25 104 CP014743_00064 - 141 2.5e-24 85.3 0.1 1 1 1.8e-28 3.2e-24 85.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family FapA PF03961.13 454 CP014743_00065 - 221 0.072 11.7 13.7 1 2 2.2e-06 0.0066 15.1 7.2 332 412 3 86 1 142 0.88 Flagellar Assembly Protein A FapA PF03961.13 454 CP014743_00065 - 221 0.072 11.7 13.7 2 2 0.057 1.7e+02 0.6 0.9 293 363 139 215 121 221 0.63 Flagellar Assembly Protein A DUF3251 PF11622.8 165 CP014743_00065 - 221 0.085 12.5 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) Fib_alpha PF08702.10 143 CP014743_00065 - 221 1.1 9.4 11.4 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP014743_00065 - 221 1.1 9.4 11.4 2 3 0.38 1.1e+03 -0.3 0.0 110 126 136 152 113 164 0.63 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP014743_00065 - 221 1.1 9.4 11.4 3 3 0.58 1.7e+03 -0.9 0.2 36 52 193 209 177 220 0.44 Fibrinogen alpha/beta chain family DUF5082 PF16888.5 123 CP014743_00065 - 221 1.8 8.9 13.9 1 2 0.00034 1 9.7 0.6 92 122 5 35 3 36 0.82 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 CP014743_00065 - 221 1.8 8.9 13.9 2 2 0.0058 17 5.7 2.9 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 CP014743_00065 - 221 4.4 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP014743_00065 - 221 4.4 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP014743_00065 - 221 4.4 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) Ax_dynein_light PF10211.9 187 CP014743_00065 - 221 4.5 7.2 15.1 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP014743_00065 - 221 4.5 7.2 15.1 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP014743_00065 - 221 4.5 7.2 15.1 3 3 0.18 5.3e+02 0.4 0.7 110 141 178 214 173 221 0.41 Axonemal dynein light chain Phage_pRha PF09669.10 88 CP014743_00066 - 188 2e-29 102.0 0.1 1 1 1.9e-33 3.3e-29 101.3 0.1 2 88 24 122 23 122 0.83 Phage regulatory protein Rha (Phage_pRha) CagE_TrbE_VirB PF03135.14 206 CP014743_00067 - 922 9.3e-49 166.3 0.3 1 1 5.2e-52 2.3e-48 165.0 0.3 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP014743_00067 - 922 7e-21 74.3 1.2 1 1 2.8e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 CP014743_00067 - 922 1.5e-07 30.7 0.8 1 1 7.7e-11 3.5e-07 29.5 0.8 23 318 547 843 533 856 0.73 AAA-like domain DUF87 PF01935.17 227 CP014743_00067 - 922 0.039 14.0 5.4 1 5 0.57 2.6e+03 -1.7 0.2 134 201 188 252 129 286 0.48 Helicase HerA, central domain DUF87 PF01935.17 227 CP014743_00067 - 922 0.039 14.0 5.4 2 5 0.81 3.6e+03 -2.2 0.0 87 124 263 298 237 301 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 CP014743_00067 - 922 0.039 14.0 5.4 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 CP014743_00067 - 922 0.039 14.0 5.4 4 5 0.0066 30 4.6 0.2 100 178 638 716 630 731 0.75 Helicase HerA, central domain DUF87 PF01935.17 227 CP014743_00067 - 922 0.039 14.0 5.4 5 5 0.31 1.4e+03 -0.8 0.1 43 108 751 811 747 916 0.59 Helicase HerA, central domain TrbC PF04956.13 99 CP014743_00068 - 87 1.4e-15 57.3 6.9 1 1 1.8e-19 1.6e-15 57.1 6.9 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP014743_00068 - 87 0.041 13.8 3.5 1 1 5.4e-06 0.049 13.5 3.3 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 CP014743_00070 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP014743_00070 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 CP014743_00070 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase Resolvase PF00239.21 146 CP014743_00071 - 204 9.1e-32 110.2 0.6 1 1 2.7e-35 1.2e-31 109.8 0.6 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP014743_00071 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP014743_00071 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 CP014743_00071 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP014743_00071 - 204 0.065 13.3 4.7 1 3 0.00015 0.68 10.0 0.7 27 59 12 44 6 45 0.87 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP014743_00071 - 204 0.065 13.3 4.7 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP014743_00071 - 204 0.065 13.3 4.7 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 CP014743_00071 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP014743_00071 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP014743_00071 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat AAA_25 PF13481.6 194 CP014743_00072 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 CP014743_00072 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP014743_00072 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP014743_00072 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP014743_00072 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 CP014743_00072 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP014743_00072 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 CP014743_00072 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 CP014743_00072 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 CP014743_00072 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 CP014743_00072 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 CP014743_00072 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain HicA_toxin PF07927.12 58 CP014743_00073 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 CP014743_00074 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 CP014743_00075 - 85 0.0043 17.1 1.7 1 1 6e-07 0.0054 16.8 1.7 34 88 20 76 18 80 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2633 PF11119.8 57 CP014743_00075 - 85 0.93 9.4 4.2 1 1 0.00019 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) DUF4223 PF13978.6 54 CP014743_00076 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 CP014743_00076 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 CP014743_00076 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 CP014743_00077 - 408 2.1e-08 34.4 0.0 1 1 7.1e-12 4.2e-08 33.4 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 CP014743_00077 - 408 0.088 12.8 0.8 1 2 6.1e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Paz_1 PF18349.1 93 CP014743_00077 - 408 0.088 12.8 0.8 2 2 0.47 2.8e+03 -1.7 0.0 63 90 257 283 221 285 0.49 PAZ domain 5_3_exonuc PF01367.20 97 CP014743_00077 - 408 0.17 12.5 4.7 1 2 0.019 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP014743_00077 - 408 0.17 12.5 4.7 2 2 0.00015 0.89 10.2 0.4 15 79 321 381 320 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF2400 PF09674.10 227 CP014743_00078 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 CP014743_00078 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Sds3 PF08598.11 218 CP014743_00080 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 CP014743_00080 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP014743_00080 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 CP014743_00080 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 CP014743_00080 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 CP014743_00081 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP014743_00081 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP014743_00081 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP014743_00081 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP014743_00081 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP014743_00081 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP014743_00081 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 CP014743_00081 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP014743_00081 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 CP014743_00081 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP014743_00081 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain Relaxase PF03432.14 242 CP014743_00082 - 462 5.1e-10 39.4 7.2 1 2 2.9e-14 5.1e-10 39.4 7.2 48 228 119 296 70 309 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP014743_00082 - 462 5.1e-10 39.4 7.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_19 PF12844.7 65 CP014743_00083 - 314 1e-05 25.5 0.2 1 2 0.0055 7.1 6.7 0.0 11 31 9 29 1 42 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 CP014743_00083 - 314 1e-05 25.5 0.2 2 2 8.1e-06 0.01 15.8 0.0 27 64 116 152 91 153 0.90 Helix-turn-helix domain HTH_3 PF01381.22 55 CP014743_00083 - 314 5.4e-05 23.2 0.0 1 2 3.6e-07 0.00046 20.2 0.0 2 29 3 30 2 30 0.90 Helix-turn-helix HTH_3 PF01381.22 55 CP014743_00083 - 314 5.4e-05 23.2 0.0 2 2 0.67 8.6e+02 0.1 0.0 26 55 118 147 107 147 0.85 Helix-turn-helix Phage_CI_repr PF07022.13 65 CP014743_00083 - 314 0.0011 19.0 0.0 1 2 6.6e-05 0.084 13.0 0.0 11 49 10 47 2 50 0.77 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 CP014743_00083 - 314 0.0011 19.0 0.0 2 2 0.064 82 3.4 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 CP014743_00083 - 314 0.0078 15.7 0.0 1 2 8.2e-05 0.11 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP014743_00083 - 314 0.0078 15.7 0.0 2 2 0.29 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 CP014743_00083 - 314 0.015 15.4 0.0 1 1 2.9e-05 0.037 14.2 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 CP014743_00083 - 314 0.016 15.0 0.1 1 2 5.1e-05 0.065 13.1 0.0 4 36 5 37 2 49 0.75 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 CP014743_00083 - 314 0.016 15.0 0.1 2 2 2.5 3.2e+03 -1.9 0.1 38 47 290 299 289 300 0.87 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 CP014743_00083 - 314 0.019 14.7 0.0 1 1 3.5e-05 0.045 13.6 0.0 16 37 7 30 1 36 0.86 Homeodomain-like domain Imm3 PF14425.6 119 CP014743_00083 - 314 0.042 13.9 0.1 1 1 6.8e-05 0.087 12.9 0.1 33 113 26 104 2 109 0.75 Immunity protein Imm3 HTH_26 PF13443.6 63 CP014743_00083 - 314 0.071 13.6 0.0 1 1 0.00012 0.16 12.4 0.0 3 30 3 30 1 38 0.88 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.7 51 CP014743_00083 - 314 0.097 12.9 0.0 1 2 0.13 1.7e+02 2.5 0.0 5 16 3 14 2 16 0.90 Helix-turn-helix domain HTH_17 PF12728.7 51 CP014743_00083 - 314 0.097 12.9 0.0 2 2 0.0011 1.4 9.2 0.0 5 27 14 36 11 42 0.83 Helix-turn-helix domain HTH_31 PF13560.6 64 CP014743_00083 - 314 0.1 12.9 0.0 1 1 0.00016 0.2 12.0 0.0 12 33 8 29 2 40 0.88 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 CP014743_00083 - 314 0.13 11.9 0.0 1 1 0.00027 0.35 10.6 0.0 25 46 9 30 5 30 0.93 Sigma-70, region 4 Phage_AlpA PF05930.12 51 CP014743_00083 - 314 0.14 12.0 0.0 1 2 0.015 20 5.1 0.0 6 19 2 15 1 18 0.89 Prophage CP4-57 regulatory protein (AlpA) Phage_AlpA PF05930.12 51 CP014743_00083 - 314 0.14 12.0 0.0 2 2 0.0031 4 7.3 0.0 5 23 12 30 11 35 0.88 Prophage CP4-57 regulatory protein (AlpA) HTH_Mga PF08280.11 60 CP014743_00083 - 314 0.15 12.1 1.8 1 3 0.0044 5.6 7.1 0.1 21 37 11 27 4 30 0.89 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP014743_00083 - 314 0.15 12.1 1.8 2 3 0.065 83 3.3 0.0 25 59 41 75 32 76 0.80 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP014743_00083 - 314 0.15 12.1 1.8 3 3 9 1.2e+04 -3.5 0.0 46 50 94 98 86 105 0.47 M protein trans-acting positive regulator (MGA) HTH domain SNF2_N PF00176.23 350 CP014743_00084 - 1931 1.4e-16 60.1 0.8 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1016 1272 934 1313 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP014743_00084 - 1931 1.4e-16 60.1 0.8 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP014743_00084 - 1931 1.4e-16 60.1 0.8 3 3 1.1 3.9e+03 -3.8 0.0 172 199 1878 1906 1859 1914 0.75 SNF2 family N-terminal domain ResIII PF04851.15 171 CP014743_00084 - 1931 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 648 691 638 783 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP014743_00084 - 1931 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 999 1211 998 1242 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP014743_00084 - 1931 4.9e-08 33.2 8.3 3 3 0.34 1.2e+03 -0.7 5.2 33 121 1797 1903 1746 1928 0.65 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP014743_00084 - 1931 9.4e-07 29.2 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1076 1104 1028 1108 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP014743_00084 - 1931 9.4e-07 29.2 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP014743_00084 - 1931 1.3e-05 25.0 2.0 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1003 1108 1002 1204 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 CP014743_00084 - 1931 1.3e-05 25.0 2.0 2 2 0.15 5.5e+02 0.2 0.1 120 143 1883 1908 1832 1928 0.67 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP014743_00084 - 1931 3e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 371 471 369 474 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP014743_00084 - 1931 3e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 660 699 644 718 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 CP014743_00085 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 CP014743_00086 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 CP014743_00086 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 CP014743_00086 - 186 0.0021 18.1 0.9 1 1 2.9e-06 0.017 15.2 0.9 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP014743_00086 - 186 0.014 14.8 0.0 1 1 3.2e-06 0.019 14.4 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase NnrS PF05940.12 366 CP014743_00088 - 124 0.023 14.1 9.9 1 1 1.3e-05 0.028 13.8 9.9 75 171 8 110 3 116 0.73 NnrS protein DUF2070 PF09843.9 564 CP014743_00088 - 124 0.054 11.8 13.4 1 1 2.8e-05 0.063 11.6 13.4 80 176 9 115 3 123 0.72 Predicted membrane protein (DUF2070) DUF4199 PF13858.6 168 CP014743_00088 - 124 0.15 12.4 19.9 1 2 0.0025 5.6 7.3 8.2 6 59 11 62 7 66 0.60 Protein of unknown function (DUF4199) DUF4199 PF13858.6 168 CP014743_00088 - 124 0.15 12.4 19.9 2 2 0.00024 0.53 10.7 4.4 9 60 73 120 64 124 0.49 Protein of unknown function (DUF4199) Glucos_trans_II PF14264.6 297 CP014743_00088 - 124 0.51 9.7 27.0 1 2 0.00022 0.49 9.7 7.9 226 278 5 53 2 59 0.81 Glucosyl transferase GtrII Glucos_trans_II PF14264.6 297 CP014743_00088 - 124 0.51 9.7 27.0 2 2 0.007 16 4.8 11.0 138 187 67 113 58 123 0.55 Glucosyl transferase GtrII DUF5385 PF17359.2 220 CP014743_00088 - 124 0.52 9.8 9.3 1 2 0.09 2e+02 1.4 0.6 5 30 35 61 32 67 0.59 Family of unknown function (DUF5385) DUF5385 PF17359.2 220 CP014743_00088 - 124 0.52 9.8 9.3 2 2 4.4e-05 0.099 12.2 2.6 2 31 91 122 90 124 0.50 Family of unknown function (DUF5385) NVEALA PF14055.6 64 CP014743_00088 - 124 4.1 7.4 6.4 1 3 1 2.3e+03 -1.4 0.1 15 15 43 43 30 67 0.50 NVEALA protein NVEALA PF14055.6 64 CP014743_00088 - 124 4.1 7.4 6.4 2 3 0.04 89 3.2 0.5 9 35 72 98 62 99 0.79 NVEALA protein NVEALA PF14055.6 64 CP014743_00088 - 124 4.1 7.4 6.4 3 3 0.0019 4.2 7.4 0.2 6 29 99 122 95 124 0.86 NVEALA protein TssN PF17555.2 275 CP014743_00088 - 124 4.7 6.5 20.7 1 1 0.0026 5.9 6.2 20.7 38 142 9 116 2 122 0.71 Type VI secretion system, TssN DUF2663 PF10864.8 127 CP014743_00088 - 124 6.7 7.1 10.9 1 2 0.1 2.3e+02 2.1 1.5 51 78 30 57 1 64 0.47 Protein of unknown function (DUF2663) DUF2663 PF10864.8 127 CP014743_00088 - 124 6.7 7.1 10.9 2 2 0.016 36 4.8 8.5 17 83 56 121 27 123 0.75 Protein of unknown function (DUF2663) Lipase_3 PF01764.25 142 CP014743_00089 - 531 3.6e-08 33.4 0.0 1 1 7.7e-11 1.4e-07 31.5 0.0 49 114 175 241 139 253 0.73 Lipase (class 3) DUF2974 PF11187.8 224 CP014743_00089 - 531 2.8e-07 30.3 0.0 1 1 3.8e-10 6.7e-07 29.1 0.0 7 123 100 233 95 271 0.73 Protein of unknown function (DUF2974) PGAP1 PF07819.13 231 CP014743_00089 - 531 2.7e-05 24.0 0.3 1 2 1.9e-07 0.00034 20.4 0.0 48 114 130 213 91 232 0.72 PGAP1-like protein PGAP1 PF07819.13 231 CP014743_00089 - 531 2.7e-05 24.0 0.3 2 2 0.14 2.5e+02 1.2 0.1 44 83 306 346 271 361 0.77 PGAP1-like protein DUF676 PF05057.14 219 CP014743_00089 - 531 5.3e-05 22.8 0.0 1 1 7.2e-08 0.00013 21.6 0.0 66 105 177 216 168 234 0.71 Putative serine esterase (DUF676) LIDHydrolase PF10230.9 266 CP014743_00089 - 531 0.00045 19.9 0.1 1 1 5.2e-07 0.00093 18.8 0.1 66 101 168 206 133 217 0.71 Lipid-droplet associated hydrolase Abhydrolase_6 PF12697.7 220 CP014743_00089 - 531 0.0017 19.0 0.0 1 1 1.3e-06 0.0024 18.5 0.0 51 87 175 215 140 258 0.74 Alpha/beta hydrolase family UPF0227 PF05728.12 187 CP014743_00089 - 531 0.0021 18.1 0.9 1 3 5.7 1e+04 -3.8 0.1 123 146 54 77 36 87 0.53 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 CP014743_00089 - 531 0.0021 18.1 0.9 2 3 8e-06 0.014 15.3 0.0 40 80 172 211 144 227 0.70 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 CP014743_00089 - 531 0.0021 18.1 0.9 3 3 0.51 9.2e+02 -0.4 0.0 115 145 411 442 388 459 0.73 Uncharacterised protein family (UPF0227) DUF4450 PF14614.6 217 CP014743_00089 - 531 0.016 14.8 0.1 1 1 2.7e-05 0.049 13.2 0.1 6 48 466 508 463 515 0.94 Domain of unknown function (DUF4450) DUF1257 PF06868.11 104 CP014743_00089 - 531 0.24 11.7 2.3 1 3 0.0099 18 5.7 0.1 5 34 33 64 30 81 0.76 Protein of unknown function (DUF1257) DUF1257 PF06868.11 104 CP014743_00089 - 531 0.24 11.7 2.3 2 3 0.021 38 4.6 0.1 29 69 415 455 401 468 0.84 Protein of unknown function (DUF1257) DUF1257 PF06868.11 104 CP014743_00089 - 531 0.24 11.7 2.3 3 3 7.7 1.4e+04 -3.6 0.0 67 78 484 495 477 503 0.65 Protein of unknown function (DUF1257) SBDS PF01172.18 88 CP014743_00089 - 531 0.79 9.8 5.3 1 2 1 1.9e+03 -1.0 0.1 20 41 43 63 27 110 0.69 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS PF01172.18 88 CP014743_00089 - 531 0.79 9.8 5.3 2 2 0.00046 0.83 9.8 1.4 8 31 427 451 420 506 0.79 Shwachman-Bodian-Diamond syndrome (SBDS) protein SseC PF04888.12 317 CP014743_00092 - 1305 0.0012 18.5 0.2 1 1 1.1e-06 0.0032 17.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family APOBEC_C PF05240.14 78 CP014743_00092 - 1305 0.018 15.0 0.5 1 1 3e-05 0.091 12.7 0.5 26 76 766 819 755 821 0.86 APOBEC-like C-terminal domain ThrE PF06738.12 241 CP014743_00092 - 1305 0.019 14.3 0.8 1 1 1.7e-05 0.051 12.9 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter Hormone_2 PF00123.20 28 CP014743_00092 - 1305 0.033 14.1 0.1 1 1 5.2e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone PTS_EIIC_2 PF13303.6 328 CP014743_00092 - 1305 0.037 13.1 1.0 1 1 2.1e-05 0.064 12.3 1.0 21 107 208 297 204 316 0.82 Phosphotransferase system, EIIC TPR_11 PF13414.6 42 CP014743_00092 - 1305 0.064 12.9 0.3 1 1 5.9e-05 0.18 11.5 0.3 13 33 1193 1213 1192 1214 0.96 TPR repeat Glyco_tranf_2_5 PF13712.6 210 CP014743_00094 - 267 0.00068 19.4 3.8 1 1 7.1e-08 0.0013 18.5 3.8 4 77 114 190 111 198 0.85 Glycosyltransferase like family TraG_N PF07916.11 467 CP014743_00095 - 753 3.3e-42 144.9 22.9 1 2 3.7e-46 3.3e-42 144.9 22.9 12 465 2 449 1 455 0.80 TraG-like protein, N-terminal region TraG_N PF07916.11 467 CP014743_00095 - 753 3.3e-42 144.9 22.9 2 2 0.31 2.7e+03 -3.2 4.3 210 287 611 695 581 735 0.49 TraG-like protein, N-terminal region CHMI PF02962.15 124 CP014743_00095 - 753 0.017 15.5 0.1 1 3 0.81 7.3e+03 -2.7 0.0 98 120 21 43 5 51 0.68 5-carboxymethyl-2-hydroxymuconate isomerase CHMI PF02962.15 124 CP014743_00095 - 753 0.017 15.5 0.1 2 3 1.2e-05 0.11 12.9 0.0 47 120 69 144 61 148 0.78 5-carboxymethyl-2-hydroxymuconate isomerase CHMI PF02962.15 124 CP014743_00095 - 753 0.017 15.5 0.1 3 3 0.67 6e+03 -2.5 0.0 45 97 546 600 538 619 0.62 5-carboxymethyl-2-hydroxymuconate isomerase YafQ_toxin PF15738.5 88 CP014743_00098 - 93 2.5e-24 85.4 5.0 1 1 6.3e-28 2.8e-24 85.2 5.0 1 88 4 91 4 91 0.93 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 CP014743_00098 - 93 9.5e-06 26.1 0.3 1 1 2.7e-09 1.2e-05 25.8 0.3 3 89 8 89 6 90 0.79 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 87 CP014743_00098 - 93 0.00012 22.0 2.5 1 1 3.3e-08 0.00015 21.7 2.5 3 84 8 91 6 93 0.81 ParE-like toxin of type II bacterial toxin-antitoxin system BTHB PF18410.1 72 CP014743_00098 - 93 0.086 12.7 1.5 1 3 0.04 1.8e+02 2.0 0.1 53 66 11 24 5 30 0.79 Basic tilted helix bundle domain BTHB PF18410.1 72 CP014743_00098 - 93 0.086 12.7 1.5 2 3 0.16 7.4e+02 0.1 0.0 45 61 31 47 22 48 0.82 Basic tilted helix bundle domain BTHB PF18410.1 72 CP014743_00098 - 93 0.086 12.7 1.5 3 3 0.0002 0.87 9.4 0.1 34 63 45 74 41 80 0.92 Basic tilted helix bundle domain HicB_lk_antitox PF15919.5 123 CP014743_00100 - 119 8.3e-09 35.6 0.3 1 2 4.2e-06 0.038 14.1 0.0 1 60 12 74 12 79 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 CP014743_00100 - 119 8.3e-09 35.6 0.3 2 2 3.9e-08 0.00035 20.7 0.1 88 123 77 108 72 108 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 CP014743_00100 - 119 0.15 11.9 0.0 1 1 3.3e-05 0.29 11.0 0.0 3 35 80 112 79 115 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HicA_toxin PF07927.12 58 CP014743_00101 - 75 1.7e-06 28.0 0.0 1 1 1.4e-10 2.5e-06 27.4 0.0 5 55 24 71 20 72 0.88 HicA toxin of bacterial toxin-antitoxin, Fic PF02661.18 97 CP014743_00102 - 133 4.4e-05 24.3 0.0 1 1 8.9e-09 8e-05 23.5 0.0 23 97 6 76 2 76 0.72 Fic/DOC family Como_LCP PF02247.16 373 CP014743_00102 - 133 0.056 12.0 0.1 1 1 7.2e-06 0.065 11.8 0.1 238 302 51 116 35 129 0.88 Large coat protein DHHA1 PF02272.19 138 CP014743_00103 - 189 0.18 12.2 1.6 1 1 2e-05 0.37 11.2 1.6 15 92 36 117 22 129 0.83 DHHA1 domain DUF3825 PF12873.7 239 CP014743_00104 - 335 2.2e-28 99.3 0.4 1 1 1.9e-32 3.4e-28 98.7 0.4 1 239 106 330 106 330 0.86 Domain of unknown function (DUF3825) DUF447 PF04289.12 176 CP014743_00105 - 130 0.029 14.1 0.1 1 1 7.7e-06 0.046 13.5 0.1 42 111 21 87 19 96 0.85 Protein of unknown function (DUF447) WH1 PF00568.23 111 CP014743_00105 - 130 0.04 13.9 0.3 1 1 1e-05 0.063 13.2 0.3 9 80 28 98 20 106 0.84 WH1 domain Cob_adeno_trans PF01923.18 164 CP014743_00105 - 130 0.045 13.9 0.1 1 1 9.9e-06 0.059 13.5 0.1 25 104 37 127 32 130 0.79 Cobalamin adenosyltransferase IMS_C PF11799.8 118 CP014743_00107 - 127 0.00012 22.7 0.0 1 1 2.2e-08 0.00019 22.1 0.0 59 111 11 62 3 67 0.88 impB/mucB/samB family C-terminal domain Patched PF02460.18 811 CP014743_00107 - 127 0.024 12.8 0.2 1 1 3.1e-06 0.027 12.5 0.2 3 75 52 122 50 126 0.91 Patched family IMS PF00817.20 150 CP014743_00109 - 220 1.5e-25 89.9 0.2 1 1 2.2e-29 4e-25 88.6 0.2 1 149 10 192 10 193 0.86 impB/mucB/samB family CooC_C PF15976.5 93 CP014743_00110 - 53 0.015 15.3 0.0 1 1 1.8e-06 0.016 15.2 0.0 12 46 5 39 1 43 0.89 CS1-pili formation C-terminal PemK_toxin PF02452.17 111 CP014743_00110 - 53 0.04 14.3 0.0 1 1 5.3e-06 0.048 14.1 0.0 81 108 2 29 1 32 0.91 PemK-like, MazF-like toxin of type II toxin-antitoxin system HTH_3 PF01381.22 55 CP014743_00111 - 44 3.7e-07 30.1 0.0 1 1 4.6e-10 4.1e-07 30.0 0.0 1 36 9 43 9 44 0.94 Helix-turn-helix HTH_26 PF13443.6 63 CP014743_00111 - 44 0.00017 21.9 0.0 1 1 2.1e-07 0.00019 21.8 0.0 2 35 9 42 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 CP014743_00111 - 44 0.00074 19.0 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 65 CP014743_00111 - 44 0.0012 18.7 0.0 1 1 1.4e-06 0.0013 18.6 0.0 1 32 9 41 9 44 0.81 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_19 PF12844.7 65 CP014743_00111 - 44 0.0012 18.8 0.0 1 1 1.5e-06 0.0013 18.7 0.0 4 37 9 42 7 44 0.90 Helix-turn-helix domain HTH_23 PF13384.6 50 CP014743_00111 - 44 0.002 17.8 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 CP014743_00111 - 44 0.0038 17.3 0.3 1 1 6e-06 0.0054 16.8 0.3 25 46 1 22 1 40 0.90 ENT domain HTH_31 PF13560.6 64 CP014743_00111 - 44 0.0048 17.2 0.0 1 1 5.8e-06 0.0052 17.1 0.0 12 40 15 43 9 44 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 CP014743_00111 - 44 0.0094 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 CP014743_00111 - 44 0.0099 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 CP014743_00111 - 44 0.013 14.8 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 CP014743_00111 - 44 0.02 14.8 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 CP014743_00111 - 44 0.021 14.6 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain Phage_CI_repr PF07022.13 65 CP014743_00111 - 44 0.028 14.5 0.0 1 1 3.5e-05 0.032 14.3 0.0 3 33 9 38 7 42 0.84 Bacteriophage CI repressor helix-turn-helix domain HTH_AsnC-type PF13404.6 42 CP014743_00111 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 51 CP014743_00111 - 44 0.031 14.5 0.0 1 2 0.02 18 5.6 0.0 4 16 9 21 9 25 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 CP014743_00111 - 44 0.031 14.5 0.0 2 2 0.0034 3 8.1 0.0 6 28 22 43 19 44 0.83 Helix-turn-helix domain Sigma70_r4 PF04545.16 50 CP014743_00111 - 44 0.035 13.6 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 MerR PF00376.23 38 CP014743_00111 - 44 0.08 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 CP014743_00111 - 44 0.08 12.7 0.0 2 2 0.0096 8.6 6.2 0.0 4 18 22 36 21 43 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 CP014743_00111 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 CP014743_00111 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain DUF5601 PF18151.1 65 CP014743_00113 - 133 0.0084 16.4 0.4 1 1 1.8e-06 0.016 15.5 0.4 12 55 44 89 29 90 0.86 Domain of unknown function (DUF5601) IFP_35_N PF07334.13 76 CP014743_00113 - 133 0.14 12.2 4.9 1 3 0.0049 44 4.2 0.0 57 72 5 20 3 23 0.89 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 CP014743_00113 - 133 0.14 12.2 4.9 2 3 0.15 1.3e+03 -0.5 0.1 1 20 42 61 29 73 0.74 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 CP014743_00113 - 133 0.14 12.2 4.9 3 3 0.00022 2 8.5 0.4 6 28 97 119 90 126 0.88 Interferon-induced 35 kDa protein (IFP 35) N-terminus HSBP1 PF06825.12 51 CP014743_00115 - 126 0.025 14.4 0.1 1 1 9.8e-06 0.044 13.6 0.1 14 43 65 94 61 98 0.87 Heat shock factor binding protein 1 CCDC-167 PF15188.6 84 CP014743_00115 - 126 0.026 14.9 0.3 1 1 8.7e-06 0.039 14.3 0.3 36 79 48 108 20 110 0.72 Coiled-coil domain-containing protein 167 DUF3450 PF11932.8 241 CP014743_00115 - 126 0.11 11.8 0.2 1 1 2.9e-05 0.13 11.6 0.2 36 105 35 104 19 112 0.82 Protein of unknown function (DUF3450) DUF4164 PF13747.6 89 CP014743_00115 - 126 0.11 12.8 0.3 1 1 5.3e-05 0.24 11.7 0.1 13 42 65 95 60 98 0.89 Domain of unknown function (DUF4164) Phage_NinH PF06322.11 60 CP014743_00116 - 47 0.1 12.5 0.2 1 1 7e-06 0.13 12.2 0.2 36 56 26 46 21 47 0.90 Phage NinH protein WGR PF05406.15 80 CP014743_00120 - 75 4.2e-07 29.9 0.3 1 1 5.5e-11 4.9e-07 29.7 0.3 3 73 4 74 2 75 0.86 WGR domain Cadherin_pro PF08758.11 90 CP014743_00120 - 75 0.035 14.3 0.0 1 1 4.8e-06 0.043 14.0 0.0 15 44 26 55 12 62 0.80 Cadherin prodomain like FlaC_arch PF05377.11 55 CP014743_00121 - 76 0.0068 16.8 1.5 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 CP014743_00121 - 76 0.0068 16.8 1.5 2 2 3.8e-07 0.0068 16.8 1.5 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) Phage_integrase PF00589.22 172 CP014743_00122 - 312 4.9e-24 85.0 0.5 1 1 3.2e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 CP014743_00122 - 312 1.2e-05 25.5 4.2 1 2 1.5e-08 3.9e-05 23.9 1.8 1 79 16 99 16 102 0.92 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 CP014743_00122 - 312 1.2e-05 25.5 4.2 2 2 4 1e+04 -3.1 0.0 38 54 125 141 115 151 0.53 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP014743_00122 - 312 0.00017 21.8 4.6 1 3 6.8e-08 0.00017 21.8 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP014743_00122 - 312 0.00017 21.8 4.6 2 3 1.1 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP014743_00122 - 312 0.00017 21.8 4.6 3 3 2.1 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 85 CP014743_00122 - 312 0.0026 18.2 8.9 1 3 0.00099 2.5 8.6 0.3 35 80 5 49 2 53 0.86 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 CP014743_00122 - 312 0.0026 18.2 8.9 2 3 3.4e-06 0.0086 16.5 5.3 2 79 16 101 15 104 0.90 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 CP014743_00122 - 312 0.0026 18.2 8.9 3 3 2 5.2e+03 -2.0 0.1 8 22 285 299 281 302 0.77 Phage integrase, N-terminal SAM-like domain Phyto-Amp PF15438.6 195 CP014743_00122 - 312 0.0092 15.8 0.3 1 1 6.5e-06 0.017 15.0 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma Phage_int_SAM_3 PF14659.6 58 CP014743_00122 - 312 0.027 14.7 3.2 1 1 4.2e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain YbjN PF10722.9 127 CP014743_00122 - 312 0.029 14.4 0.3 1 2 0.00055 1.4 9.0 0.1 38 77 96 135 91 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 CP014743_00122 - 312 0.029 14.4 0.3 2 2 0.047 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator Prok-TraM PF09228.10 102 CP014745_00001 - 298 0.085 13.2 0.0 1 1 2e-05 0.18 12.2 0.0 13 93 35 115 24 120 0.89 Prokaryotic Transcriptional repressor TraM Flu_B_M2 PF04772.12 109 CP014745_00001 - 298 3 8.1 11.1 1 3 2e-05 0.18 12.0 0.3 43 102 80 139 62 142 0.90 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 CP014745_00001 - 298 3 8.1 11.1 2 3 0.017 1.5e+02 2.6 2.9 26 87 134 195 133 210 0.87 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 CP014745_00001 - 298 3 8.1 11.1 3 3 0.26 2.3e+03 -1.2 0.0 73 104 235 266 227 270 0.68 Influenza B matrix protein 2 (BM2) TagA PF12561.8 99 CP014745_00003 - 210 1.1 9.7 3.4 1 2 0.00094 17 5.9 0.7 31 90 68 127 55 133 0.81 ToxR activated gene A lipoprotein domain TagA PF12561.8 99 CP014745_00003 - 210 1.1 9.7 3.4 2 2 0.0027 49 4.4 0.1 63 88 184 209 166 210 0.84 ToxR activated gene A lipoprotein domain DUF4299 PF14132.6 301 CP014745_00004 - 116 3.2e-08 33.4 0.1 1 1 6.2e-12 3.7e-08 33.2 0.1 189 300 12 110 5 111 0.85 Domain of unknown function (DUF4299) A2M PF00207.22 92 CP014745_00004 - 116 0.11 12.3 0.0 1 1 2.6e-05 0.16 11.9 0.0 17 56 49 89 36 94 0.81 Alpha-2-macroglobulin family XPG_I PF00867.18 94 CP014745_00004 - 116 0.13 12.7 0.0 1 1 2.6e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region AHH PF14412.6 114 CP014745_00006 - 259 5.3e-16 58.7 1.4 1 1 1.1e-19 9.6e-16 57.9 1.4 10 113 155 241 148 242 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH RRF PF01765.19 162 CP014745_00006 - 259 0.12 12.3 4.7 1 2 1.8e-05 0.16 11.9 0.1 124 153 163 193 112 199 0.86 Ribosome recycling factor RRF PF01765.19 162 CP014745_00006 - 259 0.12 12.3 4.7 2 2 0.025 2.3e+02 1.7 1.1 121 146 215 242 207 256 0.69 Ribosome recycling factor Glyco_hydro_59 PF02057.15 294 CP014745_00008 - 287 0.022 14.0 1.2 1 1 2.4e-06 0.043 13.1 1.2 109 165 106 159 99 178 0.87 Glycosyl hydrolase family 59 DivIC PF04977.15 80 CP014745_00009 - 1411 0.0039 16.9 0.2 1 4 4.3e-07 0.0039 16.9 0.2 23 78 35 90 31 92 0.94 Septum formation initiator DivIC PF04977.15 80 CP014745_00009 - 1411 0.0039 16.9 0.2 2 4 0.92 8.3e+03 -3.3 3.7 24 50 259 285 248 295 0.58 Septum formation initiator DivIC PF04977.15 80 CP014745_00009 - 1411 0.0039 16.9 0.2 3 4 2 1.8e+04 -4.7 2.3 21 40 439 458 432 477 0.59 Septum formation initiator DivIC PF04977.15 80 CP014745_00009 - 1411 0.0039 16.9 0.2 4 4 2 1.8e+04 -6.5 2.6 25 44 888 907 885 912 0.48 Septum formation initiator HTH_48 PF17906.1 50 CP014745_00009 - 1411 0.043 13.9 0.2 1 2 0.00062 5.5 7.2 0.0 11 30 194 213 193 218 0.93 HTH domain in Mos1 transposase HTH_48 PF17906.1 50 CP014745_00009 - 1411 0.043 13.9 0.2 2 2 0.0098 88 3.3 0.1 7 26 1237 1256 1234 1275 0.87 HTH domain in Mos1 transposase Nucleoside_tran PF01733.18 309 CP014745_00011 - 289 0.15 11.4 2.7 1 1 4.6e-05 0.28 10.5 2.7 71 192 10 129 3 134 0.66 Nucleoside transporter Turandot PF07240.11 81 CP014745_00011 - 289 0.19 11.7 1.3 1 2 0.75 4.5e+03 -2.3 0.0 17 40 25 48 22 54 0.61 Stress-inducible humoral factor Turandot Turandot PF07240.11 81 CP014745_00011 - 289 0.19 11.7 1.3 2 2 8e-05 0.48 10.4 0.6 2 28 247 273 246 288 0.77 Stress-inducible humoral factor Turandot Sigma70_ner PF04546.13 204 CP014745_00011 - 289 0.2 11.5 6.4 1 2 0.03 1.8e+02 1.9 0.4 16 78 33 83 20 120 0.46 Sigma-70, non-essential region Sigma70_ner PF04546.13 204 CP014745_00011 - 289 0.2 11.5 6.4 2 2 1.7e-05 0.1 12.4 1.0 88 125 238 276 228 285 0.90 Sigma-70, non-essential region Rapsyn_N PF10579.9 80 CP014745_00013 - 358 0.53 10.4 3.8 1 3 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 CP014745_00013 - 358 0.53 10.4 3.8 2 3 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 CP014745_00013 - 358 0.53 10.4 3.8 3 3 0.24 4.3e+03 -2.1 0.1 19 34 340 355 329 356 0.74 Rapsyn N-terminal myristoylation and linker region DUF2768 PF10966.8 58 CP014745_00014 - 114 0.0086 16.5 0.2 1 2 1.9e-06 0.0086 16.5 0.2 22 57 37 72 35 72 0.95 Protein of unknown function (DUF2768) DUF2768 PF10966.8 58 CP014745_00014 - 114 0.0086 16.5 0.2 2 2 0.4 1.8e+03 -0.5 1.3 6 13 96 103 79 108 0.53 Protein of unknown function (DUF2768) DiS_P_DiS PF06750.13 84 CP014745_00014 - 114 0.027 14.6 0.4 1 1 1.2e-05 0.054 13.6 0.4 29 73 6 50 2 59 0.84 Bacterial Peptidase A24 N-terminal domain DZR PF12773.7 49 CP014745_00014 - 114 0.028 14.4 0.3 1 1 8.3e-06 0.037 14.0 0.3 13 37 5 38 2 45 0.88 Double zinc ribbon zinc_ribbon_4 PF13717.6 36 CP014745_00014 - 114 0.14 12.1 4.3 1 2 0.072 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP014745_00014 - 114 0.14 12.1 4.3 2 2 3.5e-05 0.16 12.0 0.3 3 16 30 43 29 47 0.86 zinc-ribbon domain Importin_rep PF18773.1 40 CP014745_00015 - 260 0.018 14.7 0.1 1 1 6.7e-06 0.04 13.6 0.1 16 27 231 242 226 249 0.90 Importin 13 repeat DUF327 PF03885.13 143 CP014745_00015 - 260 0.075 13.0 0.1 1 3 0.41 2.5e+03 -1.7 0.1 97 109 43 55 22 76 0.50 Protein of unknown function (DUF327) DUF327 PF03885.13 143 CP014745_00015 - 260 0.075 13.0 0.1 2 3 0.96 5.7e+03 -2.8 0.0 22 24 140 142 116 165 0.49 Protein of unknown function (DUF327) DUF327 PF03885.13 143 CP014745_00015 - 260 0.075 13.0 0.1 3 3 1.3e-05 0.075 13.0 0.1 48 85 217 254 191 258 0.89 Protein of unknown function (DUF327) BLOC1_2 PF10046.9 96 CP014745_00015 - 260 0.94 9.8 4.4 1 3 2.1 1.2e+04 -3.4 0.1 38 61 48 71 47 73 0.65 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP014745_00015 - 260 0.94 9.8 4.4 2 3 4.3e-05 0.26 11.6 0.4 22 75 115 172 110 179 0.87 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP014745_00015 - 260 0.94 9.8 4.4 3 3 0.81 4.8e+03 -2.1 0.0 70 79 245 254 228 258 0.43 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GPD PF05954.11 304 CP014745_00016 - 833 5.9e-18 65.2 0.0 1 1 1e-21 9.4e-18 64.5 0.0 22 281 73 360 45 376 0.76 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 CP014745_00016 - 833 0.11 12.2 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 CP014745_00016 - 833 0.11 12.2 0.0 2 2 0.00042 3.8 7.2 0.0 19 49 456 486 447 513 0.81 TCL1/MTCP1 family T6SS_TssG PF06996.11 299 CP014745_00017 - 302 3.5e-47 161.1 0.0 1 1 2.2e-51 3.9e-47 160.9 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG T6SS_TssF PF05947.12 603 CP014745_00018 - 573 1.6e-110 370.4 0.0 1 1 1e-114 1.8e-110 370.3 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF GPW_gp25 PF04965.14 95 CP014745_00019 - 130 2.2e-09 36.9 0.0 1 1 4.8e-13 2.9e-09 36.6 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 CP014745_00019 - 130 0.021 14.7 0.3 1 1 4.5e-06 0.027 14.3 0.3 94 159 21 87 5 92 0.87 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 CP014745_00019 - 130 0.072 12.6 0.2 1 2 2.9e-05 0.17 11.3 0.1 82 121 5 46 1 64 0.84 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 CP014745_00019 - 130 0.072 12.6 0.2 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 422 CP014745_00020 - 484 1.2e-169 564.6 0.0 1 1 1.6e-173 1.4e-169 564.4 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 CP014745_00020 - 484 0.33 11.0 2.6 1 4 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 CP014745_00020 - 484 0.33 11.0 2.6 2 4 1.5 1.4e+04 -3.9 0.0 103 117 130 143 127 147 0.66 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 CP014745_00020 - 484 0.33 11.0 2.6 3 4 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 CP014745_00020 - 484 0.33 11.0 2.6 4 4 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 155 CP014745_00021 - 161 6.4e-52 175.5 3.9 1 1 8e-56 7.2e-52 175.3 3.9 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 CP014745_00021 - 161 0.14 10.8 0.0 1 1 1.8e-05 0.16 10.5 0.0 171 227 55 111 40 127 0.90 Chitin synthase T6SS_VasJ PF16989.5 255 CP014745_00022 - 415 1.2e-12 47.9 0.0 1 1 3.9e-16 1.7e-12 47.3 0.0 3 153 176 323 174 408 0.84 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 CP014745_00022 - 415 0.00014 22.0 0.2 1 2 1.8e-07 0.0008 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 CP014745_00022 - 415 0.00014 22.0 0.2 2 2 0.31 1.4e+03 -0.6 0.0 47 71 185 209 162 212 0.83 ImpA, N-terminal, type VI secretion system PX PF00787.24 113 CP014745_00022 - 415 0.074 13.0 14.5 1 3 0.00025 1.1 9.2 2.4 31 111 33 130 20 131 0.67 PX domain PX PF00787.24 113 CP014745_00022 - 415 0.074 13.0 14.5 2 3 0.00084 3.8 7.5 0.2 16 112 155 275 132 276 0.68 PX domain PX PF00787.24 113 CP014745_00022 - 415 0.074 13.0 14.5 3 3 0.052 2.3e+02 1.8 0.7 22 97 316 396 296 404 0.70 PX domain TetR_C_24 PF17932.1 114 CP014745_00022 - 415 0.19 12.0 0.0 1 1 8.8e-05 0.4 11.0 0.0 20 68 71 119 62 132 0.87 Tetracyclin repressor-like, C-terminal domain T6SS-SciN PF12790.7 120 CP014745_00023 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 428 CP014745_00024 - 465 4.7e-112 374.8 0.0 1 1 3.1e-116 5.5e-112 374.6 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 205 CP014745_00025 - 257 3.6e-35 121.5 0.0 1 1 2.3e-39 4.2e-35 121.4 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_HCP PF05638.12 129 CP014745_00026 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 259 CP014745_00027 - 1175 6.2e-41 140.5 0.0 1 1 4.1e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 CP014745_00027 - 1175 5.9e-40 137.1 0.5 1 1 4.1e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 CP014745_00027 - 1175 8.2e-27 94.5 2.1 1 1 4.9e-30 1.3e-26 93.9 2.1 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 CP014745_00027 - 1175 0.0003 20.7 0.0 1 2 8.9e-06 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 CP014745_00027 - 1175 0.0003 20.7 0.0 2 2 0.047 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 CP014745_00027 - 1175 0.0011 19.0 0.1 1 2 1.7e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 CP014745_00027 - 1175 0.0011 19.0 0.1 2 2 4.1 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 CP014745_00027 - 1175 0.0041 16.8 4.8 1 3 1.4e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 CP014745_00027 - 1175 0.0041 16.8 4.8 2 3 0.13 3.4e+02 0.8 0.0 41 77 451 487 432 583 0.80 O-Antigen ligase Wzy_C PF04932.15 155 CP014745_00027 - 1175 0.0041 16.8 4.8 3 3 0.076 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 CP014745_00027 - 1175 0.055 13.2 0.1 1 2 0.00017 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 CP014745_00027 - 1175 0.055 13.2 0.1 2 2 0.76 1.9e+03 -1.3 0.0 22 37 841 856 831 870 0.75 P-loop containing region of AAA domain FHA PF00498.26 69 CP014745_00028 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 CP014745_00028 - 299 0.0007 19.9 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 CP014745_00028 - 299 0.0007 19.9 0.0 2 2 0.23 1.4e+03 -0.3 0.0 31 57 199 225 198 231 0.89 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 CP014745_00028 - 299 0.05 14.0 3.1 1 2 0.044 2.6e+02 2.1 0.1 18 58 107 147 105 150 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 CP014745_00028 - 299 0.05 14.0 3.1 2 2 7.4e-05 0.44 11.0 0.9 21 82 151 212 146 218 0.92 Ferredoxin-fold anticodon binding domain DUF3870 PF12986.7 94 CP014745_00029 - 433 0.11 12.8 0.0 1 1 1.4e-05 0.24 11.6 0.0 11 62 4 58 1 70 0.79 Domain of unknown function (DUF3870) Syntaxin-6_N PF09177.11 99 CP014745_00030 - 1596 6.8 7.3 10.5 1 3 0.038 6.8e+02 0.9 0.2 41 75 300 336 280 344 0.81 Syntaxin 6, N-terminal Syntaxin-6_N PF09177.11 99 CP014745_00030 - 1596 6.8 7.3 10.5 2 3 0.0024 44 4.7 3.3 2 97 494 597 493 599 0.65 Syntaxin 6, N-terminal Syntaxin-6_N PF09177.11 99 CP014745_00030 - 1596 6.8 7.3 10.5 3 3 0.01 1.8e+02 2.8 0.0 21 75 624 675 608 679 0.79 Syntaxin 6, N-terminal DUF2459 PF09601.10 171 CP014745_00031 - 432 0.053 13.3 1.1 1 2 1.3e-05 0.12 12.2 0.1 87 163 131 199 119 201 0.72 Protein of unknown function (DUF2459) DUF2459 PF09601.10 171 CP014745_00031 - 432 0.053 13.3 1.1 2 2 0.32 2.8e+03 -2.1 0.1 143 143 289 289 239 346 0.63 Protein of unknown function (DUF2459) BLOC1_2 PF10046.9 96 CP014745_00031 - 432 0.1 12.9 2.0 1 2 2.8e-05 0.25 11.7 1.0 44 95 263 314 260 315 0.94 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP014745_00031 - 432 0.1 12.9 2.0 2 2 2 1.8e+04 -4.1 0.0 20 30 349 359 345 364 0.58 Biogenesis of lysosome-related organelles complex-1 subunit 2 Put_DNA-bind_N PF06971.13 49 CP014745_00032 - 141 0.016 15.2 0.0 1 1 1.5e-06 0.027 14.5 0.0 11 34 4 27 3 30 0.95 Putative DNA-binding protein N-terminus Toprim_3 PF13362.6 95 CP014745_00033 - 409 2.4e-08 34.2 0.1 1 2 1.4 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 CP014745_00033 - 409 2.4e-08 34.2 0.1 2 2 1.4e-11 6.4e-08 32.9 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 CP014745_00033 - 409 0.017 15.4 0.2 1 2 0.024 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 CP014745_00033 - 409 0.017 15.4 0.2 2 2 0.00027 1.2 9.4 0.0 15 83 283 359 277 382 0.82 Retrotransposon gag protein DUF2315 PF10231.9 123 CP014745_00033 - 409 0.023 14.8 6.8 1 3 0.00028 1.3 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP014745_00033 - 409 0.023 14.8 6.8 2 3 0.0016 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP014745_00033 - 409 0.023 14.8 6.8 3 3 1.3 5.9e+03 -2.7 0.0 20 90 355 373 339 384 0.54 Apoptogenic protein 1 5_3_exonuc PF01367.20 97 CP014745_00033 - 409 0.25 12.0 1.7 1 2 0.62 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP014745_00033 - 409 0.25 12.0 1.7 2 2 0.00012 0.53 10.9 0.2 15 81 322 384 321 401 0.72 5'-3' exonuclease, C-terminal SAM fold DUF2400 PF09674.10 227 CP014745_00034 - 217 0.26 11.3 4.3 1 2 0.0086 1.5e+02 2.2 0.1 38 73 49 84 41 93 0.81 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 CP014745_00034 - 217 0.26 11.3 4.3 2 2 3.1e-05 0.56 10.2 0.9 25 111 96 182 91 210 0.74 Protein of unknown function (DUF2400) NYN PF01936.18 147 CP014745_00035 - 180 1.1e-09 39.0 0.0 1 1 2e-13 1.2e-09 38.8 0.0 60 123 74 146 15 161 0.80 NYN domain Peroxin-22 PF12827.7 113 CP014745_00035 - 180 0.004 17.0 0.6 1 1 1.3e-06 0.0079 16.1 0.6 25 105 81 162 46 169 0.76 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 CP014745_00035 - 180 0.029 15.0 0.0 1 1 8.3e-06 0.049 14.2 0.0 61 103 100 142 77 142 0.87 PIN domain RHH_7 PF16777.5 74 CP014745_00037 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 CP014745_00037 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal AAA_31 PF13614.6 177 CP014745_00038 - 186 4.8e-05 23.3 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP014745_00038 - 186 4.8e-05 23.3 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP014745_00038 - 186 0.00043 20.3 0.7 1 1 1.2e-06 0.0043 17.1 0.7 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP014745_00038 - 186 0.036 13.5 0.0 1 1 1.3e-05 0.048 13.1 0.0 17 109 69 171 61 180 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP014745_00038 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP014745_00038 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 CP014745_00039 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP014745_00039 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 CP014745_00040 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP014745_00040 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP014745_00040 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP014745_00040 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP014745_00040 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP014745_00040 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 CP014745_00041 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 CP014745_00041 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP014745_00041 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 CP014745_00041 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 CP014745_00041 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 CP014745_00041 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 CP014745_00041 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP014745_00041 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP014745_00041 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain GTP_EFTU PF00009.27 194 CP014745_00042 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP014745_00042 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP014745_00042 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP014745_00042 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP014745_00042 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP014745_00042 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP014745_00042 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP014745_00042 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP014745_00042 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP014745_00042 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 CP014745_00044 - 473 5.2e-05 23.2 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP014745_00044 - 473 0.022 14.7 4.0 1 2 0.14 1.2e+03 -0.7 0.2 12 60 218 271 211 299 0.70 Intein splicing domain Intein_splicing PF14890.6 134 CP014745_00044 - 473 0.022 14.7 4.0 2 2 3.6e-06 0.032 14.2 1.5 37 125 311 444 264 453 0.74 Intein splicing domain Topoisom_bac PF01131.20 413 CP014745_00045 - 730 1.2e-96 324.2 8.2 1 1 1.5e-99 1.7e-96 323.8 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP014745_00045 - 730 1.8e-12 47.4 0.4 1 2 9.2e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP014745_00045 - 730 1.8e-12 47.4 0.4 2 2 3.9 4.4e+03 -2.0 0.0 38 56 537 556 489 567 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 CP014745_00045 - 730 1.7e-08 34.1 15.1 1 2 3.7e-09 4.1e-06 26.5 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP014745_00045 - 730 1.7e-08 34.1 15.1 2 2 8.7e-05 0.098 12.5 2.4 3 27 683 710 681 719 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP014745_00045 - 730 1e-05 25.7 2.3 1 3 8.3 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP014745_00045 - 730 1e-05 25.7 2.3 2 3 0.00037 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP014745_00045 - 730 1e-05 25.7 2.3 3 3 3.8e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CP014745_00045 - 730 0.012 15.7 1.3 1 2 0.0077 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP014745_00045 - 730 0.012 15.7 1.3 2 2 0.0045 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CP014745_00045 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP014745_00045 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 CP014745_00045 - 730 0.056 14.3 2.8 1 2 0.007 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP014745_00045 - 730 0.056 14.3 2.8 2 2 0.021 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CP014745_00045 - 730 0.087 12.3 2.7 1 2 0.003 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP014745_00045 - 730 0.087 12.3 2.7 2 2 0.02 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 CP014745_00045 - 730 0.088 13.1 4.5 1 2 0.00079 0.88 9.9 3.7 5 64 627 689 623 696 0.71 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP014745_00045 - 730 0.088 13.1 4.5 2 2 0.0023 2.6 8.4 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain EF-hand_8 PF13833.6 55 CP014745_00045 - 730 0.088 12.7 0.0 1 1 0.00027 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 CP014745_00045 - 730 0.46 10.7 3.3 1 3 1.7 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP014745_00045 - 730 0.46 10.7 3.3 2 3 5 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP014745_00045 - 730 0.46 10.7 3.3 3 3 0.00076 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 CP014745_00045 - 730 0.55 9.9 3.0 1 2 0.03 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 CP014745_00045 - 730 0.55 9.9 3.0 2 2 0.011 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 CP014745_00045 - 730 0.64 10.0 3.8 1 2 0.0041 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP014745_00045 - 730 0.64 10.0 3.8 2 2 0.13 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 CP014745_00045 - 730 0.75 9.9 3.8 1 2 0.1 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 CP014745_00045 - 730 0.75 9.9 3.8 2 2 0.0039 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 CP014745_00045 - 730 6.9 6.5 8.0 1 2 0.046 51 3.7 2.5 15 31 629 645 627 660 0.79 PADR1 (NUC008) domain PADR1 PF08063.12 53 CP014745_00045 - 730 6.9 6.5 8.0 2 2 0.016 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 CP014745_00045 - 730 8.4 6.4 6.5 1 2 0.01 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 CP014745_00045 - 730 8.4 6.4 6.5 2 2 0.088 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 CP014745_00046 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP014745_00046 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 CP014745_00047 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 CP014745_00047 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 CP014745_00047 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 CP014745_00047 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP014745_00047 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP014745_00047 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 CP014745_00048 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 CP014745_00049 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 CP014745_00049 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 CP014745_00049 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CP014745_00049 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CP014745_00049 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 CP014745_00050 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP014745_00050 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP014745_00050 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP014745_00050 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CP014745_00050 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 CP014745_00051 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP014745_00051 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP014745_00051 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP014745_00051 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP014745_00051 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CP014745_00051 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CP014745_00051 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CP014745_00051 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP014745_00051 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CP014745_00051 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP014745_00051 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP014745_00051 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CP014745_00051 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CP014745_00051 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CP014745_00051 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP014745_00051 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CP014745_00051 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CP014745_00051 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CP014745_00051 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CP014745_00051 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CP014745_00051 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP014745_00051 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CP014745_00051 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP014745_00051 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP014745_00051 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CP014745_00051 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CP014745_00051 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 CP014745_00051 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP014745_00051 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP014745_00051 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CP014745_00051 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 CP014745_00051 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 CP014745_00052 - 390 3.1e-48 164.1 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 193 374 193 374 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP014745_00052 - 390 0.028 13.5 0.1 1 1 4.8e-06 0.043 12.9 0.1 31 81 321 371 304 376 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 CP014745_00053 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CP014745_00053 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CP014745_00053 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 CP014745_00054 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CP014745_00054 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 CP014745_00055 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CP014745_00055 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 CP014745_00056 - 332 2.7e-31 109.0 32.0 1 2 6e-35 2.7e-31 109.0 32.0 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP014745_00056 - 332 2.7e-31 109.0 32.0 2 2 0.23 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein DUF3176 PF11374.8 107 CP014745_00056 - 332 0.088 13.0 0.5 1 4 0.39 1.8e+03 -0.8 0.0 19 32 30 43 8 58 0.73 Protein of unknown function (DUF3176) DUF3176 PF11374.8 107 CP014745_00056 - 332 0.088 13.0 0.5 2 4 2e-05 0.088 13.0 0.5 62 105 119 166 106 168 0.78 Protein of unknown function (DUF3176) DUF3176 PF11374.8 107 CP014745_00056 - 332 0.088 13.0 0.5 3 4 0.62 2.8e+03 -1.5 0.2 85 106 195 216 176 217 0.49 Protein of unknown function (DUF3176) DUF3176 PF11374.8 107 CP014745_00056 - 332 0.088 13.0 0.5 4 4 1.5 6.6e+03 -2.7 0.1 86 94 240 248 219 256 0.54 Protein of unknown function (DUF3176) T_cell_tran_alt PF15128.6 92 CP014745_00056 - 332 0.18 11.6 1.6 1 2 0.1 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP014745_00056 - 332 0.18 11.6 1.6 2 2 0.00023 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 CP014745_00056 - 332 1.7 9.7 5.2 1 1 0.00061 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 CP014745_00057 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 CP014745_00057 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP014745_00057 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CP014745_00057 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP014745_00057 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 CP014745_00057 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 CP014745_00057 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 CP014745_00057 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP014745_00057 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 CP014745_00057 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 CP014745_00057 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 CP014745_00057 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 CP014745_00057 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 CP014745_00057 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 CP014745_00057 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain IF2_N PF04760.15 54 CP014745_00058 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP014745_00058 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP014745_00058 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP014745_00058 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP014745_00058 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP014745_00058 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP014745_00058 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 CP014745_00059 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3251 PF11622.8 165 CP014745_00060 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 CP014745_00060 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 CP014745_00060 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 CP014745_00060 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP014745_00060 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP014745_00060 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 CP014745_00060 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP014745_00060 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP014745_00060 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 CP014745_00060 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 CP014745_00060 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 CP014745_00060 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP014745_00060 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP014745_00060 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) Phage_pRha PF09669.10 88 CP014745_00061 - 185 6.6e-30 103.5 0.0 1 1 1.7e-33 1e-29 102.9 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 CP014745_00061 - 185 0.0051 16.9 0.0 1 1 1.8e-06 0.011 15.9 0.0 23 90 27 94 23 96 0.94 Uncharacterized protein conserved in archaea (DUF2250) DUF5512 PF17631.2 139 CP014745_00061 - 185 0.094 12.7 0.0 1 1 3.5e-05 0.21 11.6 0.0 77 131 80 130 61 134 0.85 Family of unknown function (DUF5512) CagE_TrbE_VirB PF03135.14 206 CP014745_00062 - 922 4e-51 174.0 0.4 1 1 2e-54 9.1e-51 172.9 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP014745_00062 - 922 3.7e-21 75.1 1.1 1 1 1.4e-24 6.4e-21 74.4 1.1 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 CP014745_00062 - 922 4.4e-07 29.2 0.5 1 1 2.2e-10 1e-06 28.0 0.5 23 320 547 845 535 859 0.73 AAA-like domain DUF87 PF01935.17 227 CP014745_00062 - 922 0.0092 16.1 2.9 1 5 0.46 2e+03 -1.4 0.1 96 202 139 253 122 280 0.55 Helicase HerA, central domain DUF87 PF01935.17 227 CP014745_00062 - 922 0.0092 16.1 2.9 2 5 0.95 4.3e+03 -2.4 0.0 87 124 263 298 245 301 0.78 Helicase HerA, central domain DUF87 PF01935.17 227 CP014745_00062 - 922 0.0092 16.1 2.9 3 5 0.00038 1.7 8.7 0.0 26 49 548 571 539 591 0.86 Helicase HerA, central domain DUF87 PF01935.17 227 CP014745_00062 - 922 0.0092 16.1 2.9 4 5 0.0074 33 4.5 0.2 100 163 638 700 625 733 0.77 Helicase HerA, central domain DUF87 PF01935.17 227 CP014745_00062 - 922 0.0092 16.1 2.9 5 5 0.55 2.5e+03 -1.7 0.0 43 108 751 811 747 849 0.65 Helicase HerA, central domain TrbC PF04956.13 99 CP014745_00063 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP014745_00063 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 CP014745_00065 - 135 0.00056 20.0 0.0 1 1 8.6e-08 0.0015 18.6 0.0 5 53 8 71 5 106 0.81 CRISPR associated protein Cas2 Resolvase PF00239.21 146 CP014745_00066 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP014745_00066 - 204 0.026 14.3 0.7 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 CP014745_00066 - 204 0.026 14.3 0.7 2 3 0.0016 9.6 6.1 0.0 2 36 117 152 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 CP014745_00066 - 204 0.026 14.3 0.7 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP014745_00066 - 204 0.05 13.6 4.8 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP014745_00066 - 204 0.05 13.6 4.8 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP014745_00066 - 204 0.05 13.6 4.8 3 3 0.018 1.1e+02 3.0 0.1 39 55 159 175 153 177 0.91 M protein trans-acting positive regulator (MGA) HTH domain AAA_25 PF13481.6 194 CP014745_00067 - 597 1.6e-14 54.0 0.0 1 1 1.3e-17 3.3e-14 52.9 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 CP014745_00067 - 597 0.00038 19.9 0.0 1 2 7.2e-07 0.0018 17.6 0.0 16 117 30 136 23 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP014745_00067 - 597 0.00038 19.9 0.0 2 2 0.019 48 3.2 0.0 123 183 114 176 98 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP014745_00067 - 597 0.0023 17.7 0.0 1 2 5.7e-06 0.015 15.1 0.0 46 87 32 73 22 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP014745_00067 - 597 0.0023 17.7 0.0 2 2 0.5 1.3e+03 -1.0 0.0 99 118 111 130 102 168 0.67 IstB-like ATP binding protein ATPase PF06745.13 231 CP014745_00067 - 597 0.0089 15.4 0.0 1 2 2.3e-05 0.058 12.7 0.0 16 70 30 83 23 120 0.90 KaiC ATPase PF06745.13 231 CP014745_00067 - 597 0.0089 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 CP014745_00067 - 597 0.009 16.4 0.2 1 2 8.6e-05 0.22 11.9 0.0 2 105 37 166 36 176 0.67 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP014745_00067 - 597 0.009 16.4 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 CP014745_00067 - 597 0.16 12.0 1.6 1 1 0.00029 0.74 9.9 1.6 1 29 35 63 35 536 0.91 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 CP014745_00067 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP014745_00067 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP014745_00067 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) HicB_lk_antitox PF15919.5 123 CP014745_00068 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system UBA_6 PF18039.1 42 CP014745_00069 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 CP014745_00069 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 CP014745_00069 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 CP014745_00069 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region DUF4223 PF13978.6 54 CP014745_00070 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 CP014745_00070 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 CP014745_00070 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 CP014745_00071 - 408 2.5e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 CP014745_00071 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 CP014745_00071 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 CP014745_00071 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP014745_00071 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF2400 PF09674.10 227 CP014745_00072 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 CP014745_00072 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) HisK_sensor PF18698.1 126 CP014745_00073 - 80 0.052 13.9 1.6 1 1 4e-06 0.072 13.5 1.6 29 81 8 59 3 79 0.84 Histidine kinase sensor domain SANT_DAMP1_like PF16282.5 80 CP014745_00074 - 98 0.08 13.1 0.3 1 1 6.4e-06 0.11 12.6 0.3 6 47 5 46 3 88 0.87 SANT/Myb-like domain of DAMP1 Sds3 PF08598.11 218 CP014745_00075 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 CP014745_00075 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP014745_00075 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 CP014745_00075 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 CP014745_00075 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 CP014745_00076 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP014745_00076 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP014745_00076 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP014745_00076 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP014745_00076 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP014745_00076 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP014745_00076 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 CP014745_00076 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP014745_00076 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 CP014745_00076 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP014745_00076 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain Relaxase PF03432.14 242 CP014745_00077 - 462 5.1e-10 39.4 7.2 1 2 2.9e-14 5.1e-10 39.4 7.2 48 228 119 296 70 309 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP014745_00077 - 462 5.1e-10 39.4 7.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_19 PF12844.7 65 CP014745_00078 - 314 1e-05 25.5 0.2 1 2 0.0055 7.1 6.7 0.0 11 31 9 29 1 42 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 CP014745_00078 - 314 1e-05 25.5 0.2 2 2 8.1e-06 0.01 15.8 0.0 27 64 116 152 91 153 0.90 Helix-turn-helix domain HTH_3 PF01381.22 55 CP014745_00078 - 314 5.4e-05 23.2 0.0 1 2 3.6e-07 0.00046 20.2 0.0 2 29 3 30 2 30 0.90 Helix-turn-helix HTH_3 PF01381.22 55 CP014745_00078 - 314 5.4e-05 23.2 0.0 2 2 0.67 8.6e+02 0.1 0.0 26 55 118 147 107 147 0.85 Helix-turn-helix Phage_CI_repr PF07022.13 65 CP014745_00078 - 314 0.0011 19.0 0.0 1 2 6.6e-05 0.084 13.0 0.0 11 49 10 47 2 50 0.77 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 CP014745_00078 - 314 0.0011 19.0 0.0 2 2 0.064 82 3.4 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 CP014745_00078 - 314 0.0078 15.7 0.0 1 2 8.2e-05 0.11 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP014745_00078 - 314 0.0078 15.7 0.0 2 2 0.29 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 CP014745_00078 - 314 0.015 15.4 0.0 1 1 2.9e-05 0.037 14.2 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 CP014745_00078 - 314 0.016 15.0 0.1 1 2 5.1e-05 0.065 13.1 0.0 4 36 5 37 2 49 0.75 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 CP014745_00078 - 314 0.016 15.0 0.1 2 2 2.5 3.2e+03 -1.9 0.1 38 47 290 299 289 300 0.87 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 CP014745_00078 - 314 0.019 14.7 0.0 1 1 3.5e-05 0.045 13.6 0.0 16 37 7 30 1 36 0.86 Homeodomain-like domain Imm3 PF14425.6 119 CP014745_00078 - 314 0.042 13.9 0.1 1 1 6.8e-05 0.087 12.9 0.1 33 113 26 104 2 109 0.75 Immunity protein Imm3 HTH_26 PF13443.6 63 CP014745_00078 - 314 0.071 13.6 0.0 1 1 0.00012 0.16 12.4 0.0 3 30 3 30 1 38 0.88 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.7 51 CP014745_00078 - 314 0.097 12.9 0.0 1 2 0.13 1.7e+02 2.5 0.0 5 16 3 14 2 16 0.90 Helix-turn-helix domain HTH_17 PF12728.7 51 CP014745_00078 - 314 0.097 12.9 0.0 2 2 0.0011 1.4 9.2 0.0 5 27 14 36 11 42 0.83 Helix-turn-helix domain HTH_31 PF13560.6 64 CP014745_00078 - 314 0.1 12.9 0.0 1 1 0.00016 0.2 12.0 0.0 12 33 8 29 2 40 0.88 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 CP014745_00078 - 314 0.13 11.9 0.0 1 1 0.00027 0.35 10.6 0.0 25 46 9 30 5 30 0.93 Sigma-70, region 4 Phage_AlpA PF05930.12 51 CP014745_00078 - 314 0.14 12.0 0.0 1 2 0.015 20 5.1 0.0 6 19 2 15 1 18 0.89 Prophage CP4-57 regulatory protein (AlpA) Phage_AlpA PF05930.12 51 CP014745_00078 - 314 0.14 12.0 0.0 2 2 0.0031 4 7.3 0.0 5 23 12 30 11 35 0.88 Prophage CP4-57 regulatory protein (AlpA) HTH_Mga PF08280.11 60 CP014745_00078 - 314 0.15 12.1 1.8 1 3 0.0044 5.6 7.1 0.1 21 37 11 27 4 30 0.89 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP014745_00078 - 314 0.15 12.1 1.8 2 3 0.065 83 3.3 0.0 25 59 41 75 32 76 0.80 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP014745_00078 - 314 0.15 12.1 1.8 3 3 9 1.2e+04 -3.5 0.0 46 50 94 98 86 105 0.47 M protein trans-acting positive regulator (MGA) HTH domain SNF2_N PF00176.23 350 CP014745_00079 - 1931 1.4e-16 60.1 0.8 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1016 1272 934 1313 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP014745_00079 - 1931 1.4e-16 60.1 0.8 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP014745_00079 - 1931 1.4e-16 60.1 0.8 3 3 1.1 3.9e+03 -3.8 0.0 172 199 1878 1906 1859 1914 0.75 SNF2 family N-terminal domain ResIII PF04851.15 171 CP014745_00079 - 1931 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 648 691 638 783 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP014745_00079 - 1931 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 999 1211 998 1242 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP014745_00079 - 1931 4.9e-08 33.2 8.3 3 3 0.34 1.2e+03 -0.7 5.2 33 121 1797 1903 1746 1928 0.65 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP014745_00079 - 1931 9.4e-07 29.2 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1076 1104 1028 1108 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP014745_00079 - 1931 9.4e-07 29.2 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP014745_00079 - 1931 1.3e-05 25.0 2.0 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1003 1108 1002 1204 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 CP014745_00079 - 1931 1.3e-05 25.0 2.0 2 2 0.15 5.5e+02 0.2 0.1 120 143 1883 1908 1832 1928 0.67 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP014745_00079 - 1931 3e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 371 471 369 474 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP014745_00079 - 1931 3e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 660 699 644 718 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 CP014745_00080 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 CP014745_00081 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 CP014745_00081 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 CP014745_00081 - 186 0.0021 18.1 0.9 1 1 2.9e-06 0.017 15.2 0.9 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP014745_00081 - 186 0.014 14.8 0.0 1 1 3.2e-06 0.019 14.4 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase NnrS PF05940.12 366 CP014745_00083 - 124 0.023 14.1 9.9 1 1 1.3e-05 0.028 13.8 9.9 75 171 8 110 3 116 0.73 NnrS protein DUF2070 PF09843.9 564 CP014745_00083 - 124 0.054 11.8 13.4 1 1 2.8e-05 0.063 11.6 13.4 80 176 9 115 3 123 0.72 Predicted membrane protein (DUF2070) DUF4199 PF13858.6 168 CP014745_00083 - 124 0.15 12.4 19.9 1 2 0.0025 5.6 7.3 8.2 6 59 11 62 7 66 0.60 Protein of unknown function (DUF4199) DUF4199 PF13858.6 168 CP014745_00083 - 124 0.15 12.4 19.9 2 2 0.00024 0.53 10.7 4.4 9 60 73 120 64 124 0.49 Protein of unknown function (DUF4199) Glucos_trans_II PF14264.6 297 CP014745_00083 - 124 0.51 9.7 27.0 1 2 0.00022 0.49 9.7 7.9 226 278 5 53 2 59 0.81 Glucosyl transferase GtrII Glucos_trans_II PF14264.6 297 CP014745_00083 - 124 0.51 9.7 27.0 2 2 0.007 16 4.8 11.0 138 187 67 113 58 123 0.55 Glucosyl transferase GtrII DUF5385 PF17359.2 220 CP014745_00083 - 124 0.52 9.8 9.3 1 2 0.09 2e+02 1.4 0.6 5 30 35 61 32 67 0.59 Family of unknown function (DUF5385) DUF5385 PF17359.2 220 CP014745_00083 - 124 0.52 9.8 9.3 2 2 4.4e-05 0.099 12.2 2.6 2 31 91 122 90 124 0.50 Family of unknown function (DUF5385) NVEALA PF14055.6 64 CP014745_00083 - 124 4.1 7.4 6.4 1 3 1 2.3e+03 -1.4 0.1 15 15 43 43 30 67 0.50 NVEALA protein NVEALA PF14055.6 64 CP014745_00083 - 124 4.1 7.4 6.4 2 3 0.04 89 3.2 0.5 9 35 72 98 62 99 0.79 NVEALA protein NVEALA PF14055.6 64 CP014745_00083 - 124 4.1 7.4 6.4 3 3 0.0019 4.2 7.4 0.2 6 29 99 122 95 124 0.86 NVEALA protein TssN PF17555.2 275 CP014745_00083 - 124 4.7 6.5 20.7 1 1 0.0026 5.9 6.2 20.7 38 142 9 116 2 122 0.71 Type VI secretion system, TssN DUF2663 PF10864.8 127 CP014745_00083 - 124 6.7 7.1 10.9 1 2 0.1 2.3e+02 2.1 1.5 51 78 30 57 1 64 0.47 Protein of unknown function (DUF2663) DUF2663 PF10864.8 127 CP014745_00083 - 124 6.7 7.1 10.9 2 2 0.016 36 4.8 8.5 17 83 56 121 27 123 0.75 Protein of unknown function (DUF2663) Lipase_3 PF01764.25 142 CP014745_00084 - 531 3.6e-08 33.4 0.0 1 1 7.7e-11 1.4e-07 31.5 0.0 49 114 175 241 139 253 0.73 Lipase (class 3) DUF2974 PF11187.8 224 CP014745_00084 - 531 2.8e-07 30.3 0.0 1 1 3.8e-10 6.7e-07 29.1 0.0 7 123 100 233 95 271 0.73 Protein of unknown function (DUF2974) PGAP1 PF07819.13 231 CP014745_00084 - 531 2.7e-05 24.0 0.3 1 2 1.9e-07 0.00034 20.4 0.0 48 114 130 213 91 232 0.72 PGAP1-like protein PGAP1 PF07819.13 231 CP014745_00084 - 531 2.7e-05 24.0 0.3 2 2 0.14 2.5e+02 1.2 0.1 44 83 306 346 271 361 0.77 PGAP1-like protein DUF676 PF05057.14 219 CP014745_00084 - 531 5.3e-05 22.8 0.0 1 1 7.2e-08 0.00013 21.6 0.0 66 105 177 216 168 234 0.71 Putative serine esterase (DUF676) LIDHydrolase PF10230.9 266 CP014745_00084 - 531 0.00045 19.9 0.1 1 1 5.2e-07 0.00093 18.8 0.1 66 101 168 206 133 217 0.71 Lipid-droplet associated hydrolase Abhydrolase_6 PF12697.7 220 CP014745_00084 - 531 0.0017 19.0 0.0 1 1 1.3e-06 0.0024 18.5 0.0 51 87 175 215 140 258 0.74 Alpha/beta hydrolase family UPF0227 PF05728.12 187 CP014745_00084 - 531 0.0021 18.1 0.9 1 3 5.7 1e+04 -3.8 0.1 123 146 54 77 36 87 0.53 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 CP014745_00084 - 531 0.0021 18.1 0.9 2 3 8e-06 0.014 15.3 0.0 40 80 172 211 144 227 0.70 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 CP014745_00084 - 531 0.0021 18.1 0.9 3 3 0.51 9.2e+02 -0.4 0.0 115 145 411 442 388 459 0.73 Uncharacterised protein family (UPF0227) DUF4450 PF14614.6 217 CP014745_00084 - 531 0.016 14.8 0.1 1 1 2.7e-05 0.049 13.2 0.1 6 48 466 508 463 515 0.94 Domain of unknown function (DUF4450) DUF1257 PF06868.11 104 CP014745_00084 - 531 0.24 11.7 2.3 1 3 0.0099 18 5.7 0.1 5 34 33 64 30 81 0.76 Protein of unknown function (DUF1257) DUF1257 PF06868.11 104 CP014745_00084 - 531 0.24 11.7 2.3 2 3 0.021 38 4.6 0.1 29 69 415 455 401 468 0.84 Protein of unknown function (DUF1257) DUF1257 PF06868.11 104 CP014745_00084 - 531 0.24 11.7 2.3 3 3 7.7 1.4e+04 -3.6 0.0 67 78 484 495 477 503 0.65 Protein of unknown function (DUF1257) SBDS PF01172.18 88 CP014745_00084 - 531 0.79 9.8 5.3 1 2 1 1.9e+03 -1.0 0.1 20 41 43 63 27 110 0.69 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS PF01172.18 88 CP014745_00084 - 531 0.79 9.8 5.3 2 2 0.00046 0.83 9.8 1.4 8 31 427 451 420 506 0.79 Shwachman-Bodian-Diamond syndrome (SBDS) protein SseC PF04888.12 317 CP014745_00087 - 1305 0.0012 18.5 0.2 1 1 1.1e-06 0.0032 17.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family APOBEC_C PF05240.14 78 CP014745_00087 - 1305 0.018 15.0 0.5 1 1 3e-05 0.091 12.7 0.5 26 76 766 819 755 821 0.86 APOBEC-like C-terminal domain ThrE PF06738.12 241 CP014745_00087 - 1305 0.019 14.3 0.8 1 1 1.7e-05 0.051 12.9 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter Hormone_2 PF00123.20 28 CP014745_00087 - 1305 0.033 14.1 0.1 1 1 5.2e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone PTS_EIIC_2 PF13303.6 328 CP014745_00087 - 1305 0.037 13.1 1.0 1 1 2.1e-05 0.064 12.3 1.0 21 107 208 297 204 316 0.82 Phosphotransferase system, EIIC TPR_11 PF13414.6 42 CP014745_00087 - 1305 0.064 12.9 0.3 1 1 5.9e-05 0.18 11.5 0.3 13 33 1193 1213 1192 1214 0.96 TPR repeat Glyco_tranf_2_5 PF13712.6 210 CP014745_00089 - 267 0.00068 19.4 3.8 1 1 7.1e-08 0.0013 18.5 3.8 4 77 114 190 111 198 0.85 Glycosyltransferase like family TraG_N PF07916.11 467 CP014745_00090 - 753 3.3e-42 144.9 22.9 1 2 3.7e-46 3.3e-42 144.9 22.9 12 465 2 449 1 455 0.80 TraG-like protein, N-terminal region TraG_N PF07916.11 467 CP014745_00090 - 753 3.3e-42 144.9 22.9 2 2 0.31 2.7e+03 -3.2 4.3 210 287 611 695 581 735 0.49 TraG-like protein, N-terminal region CHMI PF02962.15 124 CP014745_00090 - 753 0.017 15.5 0.1 1 3 0.81 7.3e+03 -2.7 0.0 98 120 21 43 5 51 0.68 5-carboxymethyl-2-hydroxymuconate isomerase CHMI PF02962.15 124 CP014745_00090 - 753 0.017 15.5 0.1 2 3 1.2e-05 0.11 12.9 0.0 47 120 69 144 61 148 0.78 5-carboxymethyl-2-hydroxymuconate isomerase CHMI PF02962.15 124 CP014745_00090 - 753 0.017 15.5 0.1 3 3 0.67 6e+03 -2.5 0.0 45 97 546 600 538 619 0.62 5-carboxymethyl-2-hydroxymuconate isomerase YafQ_toxin PF15738.5 88 CP014745_00093 - 93 2.5e-24 85.4 5.0 1 1 6.3e-28 2.8e-24 85.2 5.0 1 88 4 91 4 91 0.93 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 CP014745_00093 - 93 9.5e-06 26.1 0.3 1 1 2.7e-09 1.2e-05 25.8 0.3 3 89 8 89 6 90 0.79 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 87 CP014745_00093 - 93 0.00012 22.0 2.5 1 1 3.3e-08 0.00015 21.7 2.5 3 84 8 91 6 93 0.81 ParE-like toxin of type II bacterial toxin-antitoxin system BTHB PF18410.1 72 CP014745_00093 - 93 0.086 12.7 1.5 1 3 0.04 1.8e+02 2.0 0.1 53 66 11 24 5 30 0.79 Basic tilted helix bundle domain BTHB PF18410.1 72 CP014745_00093 - 93 0.086 12.7 1.5 2 3 0.16 7.4e+02 0.1 0.0 45 61 31 47 22 48 0.82 Basic tilted helix bundle domain BTHB PF18410.1 72 CP014745_00093 - 93 0.086 12.7 1.5 3 3 0.0002 0.87 9.4 0.1 34 63 45 74 41 80 0.92 Basic tilted helix bundle domain HicB_lk_antitox PF15919.5 123 CP014745_00095 - 119 8.3e-09 35.6 0.3 1 2 4.2e-06 0.038 14.1 0.0 1 60 12 74 12 79 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 CP014745_00095 - 119 8.3e-09 35.6 0.3 2 2 3.9e-08 0.00035 20.7 0.1 88 123 77 108 72 108 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 CP014745_00095 - 119 0.15 11.9 0.0 1 1 3.3e-05 0.29 11.0 0.0 3 35 80 112 79 115 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HicA_toxin PF07927.12 58 CP014745_00096 - 75 1.7e-06 28.0 0.0 1 1 1.4e-10 2.5e-06 27.4 0.0 5 55 24 71 20 72 0.88 HicA toxin of bacterial toxin-antitoxin, Fic PF02661.18 97 CP014745_00097 - 133 4.4e-05 24.3 0.0 1 1 8.9e-09 8e-05 23.5 0.0 23 97 6 76 2 76 0.72 Fic/DOC family Como_LCP PF02247.16 373 CP014745_00097 - 133 0.056 12.0 0.1 1 1 7.2e-06 0.065 11.8 0.1 238 302 51 116 35 129 0.88 Large coat protein DHHA1 PF02272.19 138 CP014745_00098 - 189 0.18 12.2 1.6 1 1 2e-05 0.37 11.2 1.6 15 92 36 117 22 129 0.83 DHHA1 domain DUF3825 PF12873.7 239 CP014745_00099 - 335 2.2e-28 99.3 0.4 1 1 1.9e-32 3.4e-28 98.7 0.4 1 239 106 330 106 330 0.86 Domain of unknown function (DUF3825) DUF447 PF04289.12 176 CP014745_00100 - 130 0.029 14.1 0.1 1 1 7.7e-06 0.046 13.5 0.1 42 111 21 87 19 96 0.85 Protein of unknown function (DUF447) WH1 PF00568.23 111 CP014745_00100 - 130 0.04 13.9 0.3 1 1 1e-05 0.063 13.2 0.3 9 80 28 98 20 106 0.84 WH1 domain Cob_adeno_trans PF01923.18 164 CP014745_00100 - 130 0.045 13.9 0.1 1 1 9.9e-06 0.059 13.5 0.1 25 104 37 127 32 130 0.79 Cobalamin adenosyltransferase IMS_C PF11799.8 118 CP014745_00102 - 127 0.00012 22.7 0.0 1 1 2.2e-08 0.00019 22.1 0.0 59 111 11 62 3 67 0.88 impB/mucB/samB family C-terminal domain Patched PF02460.18 811 CP014745_00102 - 127 0.024 12.8 0.2 1 1 3.1e-06 0.027 12.5 0.2 3 75 52 122 50 126 0.91 Patched family IMS PF00817.20 150 CP014745_00104 - 220 1.5e-25 89.9 0.2 1 1 2.2e-29 4e-25 88.6 0.2 1 149 10 192 10 193 0.86 impB/mucB/samB family CooC_C PF15976.5 93 CP014745_00105 - 53 0.015 15.3 0.0 1 1 1.8e-06 0.016 15.2 0.0 12 46 5 39 1 43 0.89 CS1-pili formation C-terminal PemK_toxin PF02452.17 111 CP014745_00105 - 53 0.04 14.3 0.0 1 1 5.3e-06 0.048 14.1 0.0 81 108 2 29 1 32 0.91 PemK-like, MazF-like toxin of type II toxin-antitoxin system HTH_3 PF01381.22 55 CP014745_00106 - 44 3.7e-07 30.1 0.0 1 1 4.6e-10 4.1e-07 30.0 0.0 1 36 9 43 9 44 0.94 Helix-turn-helix HTH_26 PF13443.6 63 CP014745_00106 - 44 0.00017 21.9 0.0 1 1 2.1e-07 0.00019 21.8 0.0 2 35 9 42 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 CP014745_00106 - 44 0.00074 19.0 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 65 CP014745_00106 - 44 0.0012 18.7 0.0 1 1 1.4e-06 0.0013 18.6 0.0 1 32 9 41 9 44 0.81 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_19 PF12844.7 65 CP014745_00106 - 44 0.0012 18.8 0.0 1 1 1.5e-06 0.0013 18.7 0.0 4 37 9 42 7 44 0.90 Helix-turn-helix domain HTH_23 PF13384.6 50 CP014745_00106 - 44 0.002 17.8 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 CP014745_00106 - 44 0.0038 17.3 0.3 1 1 6e-06 0.0054 16.8 0.3 25 46 1 22 1 40 0.90 ENT domain HTH_31 PF13560.6 64 CP014745_00106 - 44 0.0048 17.2 0.0 1 1 5.8e-06 0.0052 17.1 0.0 12 40 15 43 9 44 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 CP014745_00106 - 44 0.0094 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 CP014745_00106 - 44 0.0099 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 CP014745_00106 - 44 0.013 14.8 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 CP014745_00106 - 44 0.02 14.8 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 CP014745_00106 - 44 0.021 14.6 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain Phage_CI_repr PF07022.13 65 CP014745_00106 - 44 0.028 14.5 0.0 1 1 3.5e-05 0.032 14.3 0.0 3 33 9 38 7 42 0.84 Bacteriophage CI repressor helix-turn-helix domain HTH_AsnC-type PF13404.6 42 CP014745_00106 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 51 CP014745_00106 - 44 0.031 14.5 0.0 1 2 0.02 18 5.6 0.0 4 16 9 21 9 25 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 CP014745_00106 - 44 0.031 14.5 0.0 2 2 0.0034 3 8.1 0.0 6 28 22 43 19 44 0.83 Helix-turn-helix domain Sigma70_r4 PF04545.16 50 CP014745_00106 - 44 0.035 13.6 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 MerR PF00376.23 38 CP014745_00106 - 44 0.08 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 CP014745_00106 - 44 0.08 12.7 0.0 2 2 0.0096 8.6 6.2 0.0 4 18 22 36 21 43 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 CP014745_00106 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 CP014745_00106 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain DUF5601 PF18151.1 65 CP014745_00108 - 133 0.0084 16.4 0.4 1 1 1.8e-06 0.016 15.5 0.4 12 55 44 89 29 90 0.86 Domain of unknown function (DUF5601) IFP_35_N PF07334.13 76 CP014745_00108 - 133 0.14 12.2 4.9 1 3 0.0049 44 4.2 0.0 57 72 5 20 3 23 0.89 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 CP014745_00108 - 133 0.14 12.2 4.9 2 3 0.15 1.3e+03 -0.5 0.1 1 20 42 61 29 73 0.74 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 CP014745_00108 - 133 0.14 12.2 4.9 3 3 0.00022 2 8.5 0.4 6 28 97 119 90 126 0.88 Interferon-induced 35 kDa protein (IFP 35) N-terminus HSBP1 PF06825.12 51 CP014745_00110 - 126 0.025 14.4 0.1 1 1 9.8e-06 0.044 13.6 0.1 14 43 65 94 61 98 0.87 Heat shock factor binding protein 1 CCDC-167 PF15188.6 84 CP014745_00110 - 126 0.026 14.9 0.3 1 1 8.7e-06 0.039 14.3 0.3 36 79 48 108 20 110 0.72 Coiled-coil domain-containing protein 167 DUF3450 PF11932.8 241 CP014745_00110 - 126 0.11 11.8 0.2 1 1 2.9e-05 0.13 11.6 0.2 36 105 35 104 19 112 0.82 Protein of unknown function (DUF3450) DUF4164 PF13747.6 89 CP014745_00110 - 126 0.11 12.8 0.3 1 1 5.3e-05 0.24 11.7 0.1 13 42 65 95 60 98 0.89 Domain of unknown function (DUF4164) Phage_NinH PF06322.11 60 CP014745_00111 - 47 0.1 12.5 0.2 1 1 7e-06 0.13 12.2 0.2 36 56 26 46 21 47 0.90 Phage NinH protein WGR PF05406.15 80 CP014745_00115 - 75 4.2e-07 29.9 0.3 1 1 5.5e-11 4.9e-07 29.7 0.3 3 73 4 74 2 75 0.86 WGR domain Cadherin_pro PF08758.11 90 CP014745_00115 - 75 0.035 14.3 0.0 1 1 4.8e-06 0.043 14.0 0.0 15 44 26 55 12 62 0.80 Cadherin prodomain like FlaC_arch PF05377.11 55 CP014745_00116 - 76 0.0068 16.8 1.5 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 CP014745_00116 - 76 0.0068 16.8 1.5 2 2 3.8e-07 0.0068 16.8 1.5 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) Phage_integrase PF00589.22 172 CP014745_00117 - 312 4.9e-24 85.0 0.5 1 1 3.2e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 CP014745_00117 - 312 1.2e-05 25.5 4.2 1 2 1.5e-08 3.9e-05 23.9 1.8 1 79 16 99 16 102 0.92 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 CP014745_00117 - 312 1.2e-05 25.5 4.2 2 2 4 1e+04 -3.1 0.0 38 54 125 141 115 151 0.53 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP014745_00117 - 312 0.00017 21.8 4.6 1 3 6.8e-08 0.00017 21.8 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP014745_00117 - 312 0.00017 21.8 4.6 2 3 1.1 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP014745_00117 - 312 0.00017 21.8 4.6 3 3 2.1 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 85 CP014745_00117 - 312 0.0026 18.2 8.9 1 3 0.00099 2.5 8.6 0.3 35 80 5 49 2 53 0.86 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 CP014745_00117 - 312 0.0026 18.2 8.9 2 3 3.4e-06 0.0086 16.5 5.3 2 79 16 101 15 104 0.90 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 CP014745_00117 - 312 0.0026 18.2 8.9 3 3 2 5.2e+03 -2.0 0.1 8 22 285 299 281 302 0.77 Phage integrase, N-terminal SAM-like domain Phyto-Amp PF15438.6 195 CP014745_00117 - 312 0.0092 15.8 0.3 1 1 6.5e-06 0.017 15.0 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma Phage_int_SAM_3 PF14659.6 58 CP014745_00117 - 312 0.027 14.7 3.2 1 1 4.2e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain YbjN PF10722.9 127 CP014745_00117 - 312 0.029 14.4 0.3 1 2 0.00055 1.4 9.0 0.1 38 77 96 135 91 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 CP014745_00117 - 312 0.029 14.4 0.3 2 2 0.047 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator IMS PF00817.20 150 CP017026_00001 - 126 1.1e-06 28.7 0.1 1 1 1.7e-10 3e-06 27.3 0.1 1 80 10 122 10 126 0.71 impB/mucB/samB family DUF4368 PF14287.6 67 CP017026_00002 - 628 3.6e-23 81.6 2.1 1 1 3.9e-26 1.2e-22 80.0 2.1 2 66 472 537 471 538 0.92 Domain of unknown function (DUF4368) Recombinase PF07508.13 104 CP017026_00002 - 628 3.6e-22 78.7 0.7 1 2 2.6 7.8e+03 -2.7 0.0 8 32 133 157 132 173 0.80 Recombinase Recombinase PF07508.13 104 CP017026_00002 - 628 3.6e-22 78.7 0.7 2 2 4.6e-25 1.4e-21 76.9 0.2 1 101 183 303 183 305 0.96 Recombinase Resolvase PF00239.21 146 CP017026_00002 - 628 5.2e-21 75.3 0.1 1 3 1.7e-24 5.2e-21 75.3 0.1 2 146 9 161 8 161 0.90 Resolvase, N terminal domain Resolvase PF00239.21 146 CP017026_00002 - 628 5.2e-21 75.3 0.1 2 3 0.18 5.4e+02 0.6 2.3 21 62 380 422 375 521 0.78 Resolvase, N terminal domain Resolvase PF00239.21 146 CP017026_00002 - 628 5.2e-21 75.3 0.1 3 3 1.2 3.6e+03 -2.1 1.6 123 142 579 598 549 602 0.65 Resolvase, N terminal domain Zn_ribbon_recom PF13408.6 58 CP017026_00002 - 628 1.4e-12 47.9 2.6 1 1 1.5e-15 4.3e-12 46.3 2.6 1 58 318 380 318 380 0.84 Recombinase zinc beta ribbon domain Xrn1_D3 PF18194.1 71 CP017026_00002 - 628 0.14 12.2 0.7 1 2 0.00013 0.38 10.9 0.1 2 28 376 402 375 412 0.91 Exoribonuclease 1 Domain-3 Xrn1_D3 PF18194.1 71 CP017026_00002 - 628 0.14 12.2 0.7 2 2 4 1.2e+04 -3.5 0.1 33 50 464 481 458 484 0.74 Exoribonuclease 1 Domain-3 Snapin_Pallidin PF14712.6 90 CP017026_00002 - 628 1.2 9.6 6.0 1 3 6 1.8e+04 -3.8 0.0 33 51 29 47 24 54 0.68 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 CP017026_00002 - 628 1.2 9.6 6.0 2 3 0.0043 13 6.3 0.2 46 78 397 429 383 435 0.78 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 CP017026_00002 - 628 1.2 9.6 6.0 3 3 0.0082 24 5.4 0.2 26 56 455 486 452 504 0.82 Snapin/Pallidin TnpV PF14198.6 112 CP017026_00003 - 114 3.3e-41 139.8 0.5 1 1 2e-45 3.6e-41 139.6 0.5 1 112 4 112 4 112 0.99 Transposon-encoded protein TnpV AAA_18 PF13238.6 130 CP017026_00004 - 181 1.4e-14 54.8 0.0 1 1 4.6e-17 1.8e-14 54.4 0.0 1 122 7 133 7 141 0.78 AAA domain AAA_33 PF13671.6 143 CP017026_00004 - 181 2.8e-11 43.8 0.0 1 1 8.7e-14 3.5e-11 43.5 0.0 2 136 7 144 6 147 0.80 AAA domain CPT PF07931.12 174 CP017026_00004 - 181 1.9e-10 40.9 0.0 1 1 9.1e-13 3.6e-10 39.9 0.0 1 172 4 172 4 174 0.80 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 199 CP017026_00004 - 181 1.5e-07 30.9 0.1 1 1 8e-10 3.2e-07 29.8 0.1 18 161 6 139 2 174 0.76 Zeta toxin AAA_28 PF13521.6 163 CP017026_00004 - 181 4e-06 27.2 0.2 1 2 2.8e-08 1.1e-05 25.7 0.0 2 65 7 74 6 86 0.72 AAA domain AAA_28 PF13521.6 163 CP017026_00004 - 181 4e-06 27.2 0.2 2 2 4.9 2e+03 -1.1 0.0 35 127 100 125 89 158 0.52 AAA domain AAA PF00004.29 132 CP017026_00004 - 181 7.9e-06 26.3 0.0 1 2 1.4e-07 5.6e-05 23.6 0.0 2 25 8 31 7 83 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP017026_00004 - 181 7.9e-06 26.3 0.0 2 2 1.5 6.2e+02 0.8 0.0 113 131 117 135 96 176 0.64 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 136 CP017026_00004 - 181 9.5e-06 26.1 0.0 1 1 1e-07 4e-05 24.1 0.0 1 128 10 131 10 138 0.76 AAA domain AAA_22 PF13401.6 137 CP017026_00004 - 181 1.5e-05 25.3 0.0 1 2 1.5e-07 5.9e-05 23.4 0.0 4 43 3 42 1 88 0.83 AAA domain AAA_22 PF13401.6 137 CP017026_00004 - 181 1.5e-05 25.3 0.0 2 2 2.7 1.1e+03 -0.2 0.0 61 98 120 156 91 176 0.72 AAA domain AAA_14 PF13173.6 131 CP017026_00004 - 181 6.5e-05 23.0 0.0 1 1 2.4e-07 9.5e-05 22.4 0.0 2 123 4 137 3 145 0.74 AAA domain AAA_16 PF13191.6 170 CP017026_00004 - 181 0.00031 21.2 0.0 1 1 1e-06 0.00041 20.8 0.0 22 61 2 42 1 133 0.81 AAA ATPase domain DUF2075 PF09848.9 363 CP017026_00004 - 181 0.001 18.4 0.2 1 1 3e-06 0.0012 18.2 0.2 2 27 5 32 4 146 0.90 Uncharacterized conserved protein (DUF2075) KTI12 PF08433.10 272 CP017026_00004 - 181 0.0016 17.9 0.1 1 2 9.5e-06 0.0038 16.7 0.0 3 42 6 44 5 87 0.77 Chromatin associated protein KTI12 KTI12 PF08433.10 272 CP017026_00004 - 181 0.0016 17.9 0.1 2 2 3.4 1.4e+03 -1.5 0.1 128 128 135 135 100 175 0.55 Chromatin associated protein KTI12 AAA_19 PF13245.6 146 CP017026_00004 - 181 0.0017 18.7 0.2 1 1 8.9e-06 0.0035 17.7 0.0 9 39 3 33 1 49 0.84 AAA domain AAA_24 PF13479.6 197 CP017026_00004 - 181 0.0019 17.9 0.4 1 1 1e-05 0.004 16.9 0.4 3 33 5 40 3 173 0.73 AAA domain AAA_30 PF13604.6 192 CP017026_00004 - 181 0.0023 17.7 0.2 1 1 9.8e-06 0.0039 16.9 0.2 17 40 3 26 1 39 0.84 AAA domain ABC_tran PF00005.27 137 CP017026_00004 - 181 0.0025 18.3 0.1 1 1 7.6e-06 0.003 18.1 0.1 9 51 2 43 1 160 0.83 ABC transporter ATPase_2 PF01637.18 233 CP017026_00004 - 181 0.0033 17.4 0.4 1 2 0.0026 1 9.2 0.0 19 54 3 38 1 65 0.80 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 CP017026_00004 - 181 0.0033 17.4 0.4 2 2 0.019 7.5 6.4 0.4 48 114 102 174 96 179 0.71 ATPase domain predominantly from Archaea APS_kinase PF01583.20 158 CP017026_00004 - 181 0.0047 16.8 0.0 1 2 0.00025 0.099 12.5 0.0 1 45 3 45 3 94 0.65 Adenylylsulphate kinase APS_kinase PF01583.20 158 CP017026_00004 - 181 0.0047 16.8 0.0 2 2 0.28 1.1e+02 2.6 0.0 45 77 119 151 98 174 0.83 Adenylylsulphate kinase TIP49 PF06068.13 351 CP017026_00004 - 181 0.0054 16.0 0.4 1 2 4.9e-05 0.019 14.2 0.0 50 75 4 29 1 46 0.81 TIP49 P-loop domain TIP49 PF06068.13 351 CP017026_00004 - 181 0.0054 16.0 0.4 2 2 1.3 5e+02 -0.4 0.3 142 182 120 160 99 172 0.70 TIP49 P-loop domain ATPase PF06745.13 231 CP017026_00004 - 181 0.0068 15.8 1.2 1 2 4e-05 0.016 14.6 0.1 18 38 3 23 1 39 0.87 KaiC ATPase PF06745.13 231 CP017026_00004 - 181 0.0068 15.8 1.2 2 2 1.4 5.7e+02 -0.3 0.2 99 130 128 160 100 178 0.50 KaiC DnaB_C PF03796.15 255 CP017026_00004 - 181 0.01 15.2 1.0 1 2 0.00021 0.084 12.2 0.0 17 47 2 32 1 41 0.84 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP017026_00004 - 181 0.01 15.2 1.0 2 2 0.34 1.4e+02 1.7 0.3 47 116 102 172 96 180 0.50 DnaB-like helicase C terminal domain T2SSE PF00437.20 273 CP017026_00004 - 181 0.011 14.9 0.0 1 1 4.2e-05 0.017 14.2 0.0 130 154 5 29 1 71 0.87 Type II/IV secretion system protein SRP54 PF00448.22 196 CP017026_00004 - 181 0.016 14.9 0.1 1 2 9.1e-05 0.036 13.7 0.0 3 40 6 42 4 46 0.81 SRP54-type protein, GTPase domain SRP54 PF00448.22 196 CP017026_00004 - 181 0.016 14.9 0.1 2 2 6.3 2.5e+03 -2.1 0.0 76 80 123 127 97 171 0.55 SRP54-type protein, GTPase domain Viral_helicase1 PF01443.18 234 CP017026_00004 - 181 0.017 14.8 0.0 1 1 6.8e-05 0.027 14.2 0.0 1 60 7 75 7 89 0.66 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.15 168 CP017026_00004 - 181 0.018 15.0 0.6 1 2 9e-05 0.036 14.0 0.2 2 22 7 27 6 36 0.88 NTPase NTPase_1 PF03266.15 168 CP017026_00004 - 181 0.018 15.0 0.6 2 2 8.8 3.5e+03 -2.3 0.0 92 92 126 126 96 169 0.60 NTPase RuvB_N PF05496.12 159 CP017026_00004 - 181 0.018 14.8 0.1 1 2 0.0002 0.08 12.7 0.0 36 59 7 30 3 46 0.86 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 CP017026_00004 - 181 0.018 14.8 0.1 2 2 2.6 1e+03 -0.7 0.0 96 140 111 159 103 171 0.62 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 194 CP017026_00004 - 181 0.02 14.5 0.3 1 3 0.00018 0.071 12.7 0.1 32 54 3 25 1 28 0.88 AAA domain AAA_25 PF13481.6 194 CP017026_00004 - 181 0.02 14.5 0.3 2 3 8 3.2e+03 -2.5 0.0 119 174 57 74 31 85 0.49 AAA domain AAA_25 PF13481.6 194 CP017026_00004 - 181 0.02 14.5 0.3 3 3 4.2 1.7e+03 -1.6 0.0 69 89 101 121 92 169 0.51 AAA domain Cytidylate_kin2 PF13189.6 179 CP017026_00004 - 181 0.024 14.8 0.2 1 2 0.038 15 5.6 0.1 1 22 6 27 6 33 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 CP017026_00004 - 181 0.024 14.8 0.2 2 2 0.011 4.5 7.4 0.0 108 147 99 138 42 146 0.89 Cytidylate kinase-like family Rad17 PF03215.15 186 CP017026_00004 - 181 0.033 14.1 0.0 1 2 0.00041 0.16 11.9 0.0 45 69 4 28 1 41 0.87 Rad17 P-loop domain Rad17 PF03215.15 186 CP017026_00004 - 181 0.033 14.1 0.0 2 2 1.9 7.6e+02 -0.1 0.0 113 146 110 145 98 167 0.71 Rad17 P-loop domain NB-ARC PF00931.22 252 CP017026_00004 - 181 0.038 13.2 0.0 1 1 0.00018 0.072 12.3 0.0 21 47 5 30 1 48 0.84 NB-ARC domain ArsA_ATPase PF02374.15 305 CP017026_00004 - 181 0.04 13.1 0.1 1 2 0.00025 0.099 11.8 0.0 2 44 5 46 4 84 0.80 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 CP017026_00004 - 181 0.04 13.1 0.1 2 2 2.8 1.1e+03 -1.5 0.1 162 282 137 151 105 175 0.45 Anion-transporting ATPase MKT1_N PF12247.8 90 CP017026_00004 - 181 0.042 14.2 0.0 1 1 0.00024 0.097 13.0 0.0 14 52 39 75 35 154 0.89 Temperature dependent protein affecting M2 dsRNA replication Hydin_ADK PF17213.3 198 CP017026_00004 - 181 0.043 14.1 1.2 1 2 0.00014 0.054 13.8 0.2 2 22 7 27 6 31 0.92 Hydin Adenylate kinase-like domain Hydin_ADK PF17213.3 198 CP017026_00004 - 181 0.043 14.1 1.2 2 2 9.1 3.6e+03 -2.0 0.0 58 72 123 137 109 177 0.42 Hydin Adenylate kinase-like domain NACHT PF05729.12 166 CP017026_00004 - 181 0.048 13.6 0.0 1 1 0.00018 0.071 13.0 0.0 1 31 5 35 5 73 0.75 NACHT domain AAA_11 PF13086.6 261 CP017026_00004 - 181 0.051 13.4 1.5 1 1 0.00025 0.1 12.4 1.5 16 42 3 29 1 179 0.86 AAA domain RNA_helicase PF00910.22 107 CP017026_00004 - 181 0.051 14.0 0.0 1 1 0.00024 0.095 13.1 0.0 1 35 7 42 7 77 0.71 RNA helicase Sigma54_activat PF00158.26 168 CP017026_00004 - 181 0.055 13.2 0.0 1 1 0.00025 0.1 12.3 0.0 25 67 7 56 1 89 0.73 Sigma-54 interaction domain GvpD PF07088.11 484 CP017026_00004 - 181 0.057 12.0 0.4 1 2 0.001 0.41 9.2 0.1 9 26 3 20 1 38 0.87 GvpD gas vesicle protein GvpD PF07088.11 484 CP017026_00004 - 181 0.057 12.0 0.4 2 2 0.29 1.1e+02 1.1 0.0 31 375 97 132 79 174 0.65 GvpD gas vesicle protein AAA_7 PF12775.7 181 CP017026_00004 - 181 0.059 12.9 0.2 1 2 0.0003 0.12 11.9 0.0 31 64 2 35 1 47 0.83 P-loop containing dynein motor region AAA_7 PF12775.7 181 CP017026_00004 - 181 0.059 12.9 0.2 2 2 6 2.4e+03 -2.1 0.0 84 90 126 132 98 168 0.57 P-loop containing dynein motor region PhoH PF02562.16 205 CP017026_00004 - 181 0.079 12.4 0.1 1 1 0.00046 0.18 11.2 0.1 18 43 3 28 1 36 0.81 PhoH-like protein IstB_IS21 PF01695.17 178 CP017026_00004 - 181 0.08 12.7 0.1 1 1 0.00042 0.17 11.6 0.0 48 70 5 27 1 47 0.84 IstB-like ATP binding protein ATP-synt_ab PF00006.25 213 CP017026_00004 - 181 0.086 12.5 0.0 1 1 0.00027 0.11 12.2 0.0 12 70 2 120 1 140 0.67 ATP synthase alpha/beta family, nucleotide-binding domain Ploopntkinase1 PF18748.1 196 CP017026_00004 - 181 0.1 12.1 0.1 1 2 0.24 94 2.4 0.0 16 41 3 29 1 41 0.78 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 CP017026_00004 - 181 0.1 12.1 0.1 2 2 0.0052 2.1 7.8 0.0 93 164 72 143 56 158 0.76 P-loop Nucleotide Kinase1 IPT PF01745.16 233 CP017026_00004 - 181 0.11 11.9 0.2 1 2 0.00066 0.26 10.6 0.1 3 25 6 28 4 41 0.90 Isopentenyl transferase IPT PF01745.16 233 CP017026_00004 - 181 0.11 11.9 0.2 2 2 3.7 1.5e+03 -1.6 0.0 194 211 127 144 82 161 0.65 Isopentenyl transferase Ploopntkinase3 PF18751.1 185 CP017026_00004 - 181 0.12 12.2 0.4 1 2 0.001 0.4 10.6 0.0 3 33 4 34 1 49 0.80 P-loop Nucleotide Kinase3 Ploopntkinase3 PF18751.1 185 CP017026_00004 - 181 0.12 12.2 0.4 2 2 4.4 1.8e+03 -1.3 0.0 108 145 101 139 95 160 0.69 P-loop Nucleotide Kinase3 APH PF01636.23 240 CP017026_00005 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 CP017026_00005 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 CP017026_00005 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 CP017026_00005 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 CP017026_00005 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 CP017026_00005 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 CP017026_00006 - 139 1.3e-51 175.6 0.1 1 1 8.3e-56 1.5e-51 175.5 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase APH PF01636.23 240 CP017026_00007 - 250 6.8e-11 42.6 0.0 1 1 9.1e-15 8.1e-11 42.3 0.0 34 218 45 220 16 242 0.81 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 CP017026_00007 - 250 0.014 14.6 0.1 1 2 0.00011 1 8.5 0.0 52 94 44 84 11 91 0.72 Fructosamine kinase Fructosamin_kin PF03881.14 288 CP017026_00007 - 250 0.014 14.6 0.1 2 2 0.0019 17 4.5 0.1 184 251 168 237 107 246 0.75 Fructosamine kinase CPT PF07931.12 174 CP017026_00008 - 146 4e-06 26.8 0.0 1 1 1.4e-09 4.9e-06 26.5 0.0 59 172 20 137 11 139 0.78 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 130 CP017026_00008 - 146 9.4e-06 26.2 0.0 1 1 3.2e-09 1.2e-05 25.9 0.0 46 122 15 98 1 106 0.77 AAA domain AAA_33 PF13671.6 143 CP017026_00008 - 146 0.00063 19.9 0.0 1 1 2.2e-07 0.0008 19.6 0.0 55 136 30 109 9 112 0.82 AAA domain MKT1_N PF12247.8 90 CP017026_00008 - 146 0.027 14.8 0.0 1 1 1.7e-05 0.063 13.6 0.0 15 52 5 40 3 131 0.90 Temperature dependent protein affecting M2 dsRNA replication AAA_17 PF13207.6 136 CP017026_00008 - 146 0.14 12.6 0.0 1 1 5.4e-05 0.19 12.1 0.0 55 128 27 96 12 103 0.73 AAA domain DUF3847 PF12958.7 81 CP017026_00009 - 119 1.8e-31 108.1 8.2 1 1 5.7e-35 2.6e-31 107.6 8.2 1 81 6 89 6 89 0.98 Protein of unknown function (DUF3847) CENP-Q PF13094.6 168 CP017026_00009 - 119 0.034 14.3 11.9 1 1 9.8e-06 0.044 14.0 11.9 46 96 5 56 2 115 0.74 CENP-Q, a CENPA-CAD centromere complex subunit TPR_8 PF13181.6 34 CP017026_00009 - 119 0.078 13.2 0.1 1 1 4.4e-05 0.2 12.0 0.1 6 27 20 41 16 48 0.89 Tetratricopeptide repeat PHM7_cyt PF14703.6 176 CP017026_00009 - 119 4.2 7.6 7.2 1 1 0.0015 6.6 6.9 7.2 40 87 3 56 1 111 0.75 Cytosolic domain of 10TM putative phosphate transporter MobA_MobL PF03389.15 222 CP017026_00010 - 498 3.7e-79 265.5 0.0 1 2 7.3e-82 1.4e-78 263.6 0.0 1 222 17 246 17 246 0.99 MobA/MobL family MobA_MobL PF03389.15 222 CP017026_00010 - 498 3.7e-79 265.5 0.0 2 2 0.85 1.7e+03 -1.5 0.1 7 188 309 339 297 367 0.59 MobA/MobL family Spectrin PF00435.21 105 CP017026_00010 - 498 0.015 15.8 2.4 1 2 9e-05 0.18 12.3 0.2 6 102 269 365 264 368 0.75 Spectrin repeat Spectrin PF00435.21 105 CP017026_00010 - 498 0.015 15.8 2.4 2 2 0.14 2.7e+02 2.1 0.1 33 90 406 463 396 464 0.78 Spectrin repeat Prominin PF05478.11 800 CP017026_00010 - 498 0.02 12.9 1.9 1 1 1.4e-05 0.029 12.4 1.9 542 695 321 479 298 487 0.84 Prominin Snapin_Pallidin PF14712.6 90 CP017026_00010 - 498 0.021 15.2 2.0 1 2 3e-05 0.059 13.8 0.3 14 69 337 393 335 395 0.95 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 CP017026_00010 - 498 0.021 15.2 2.0 2 2 0.69 1.4e+03 -0.2 0.1 36 69 430 465 427 482 0.67 Snapin/Pallidin DUF2408 PF10303.9 135 CP017026_00010 - 498 0.032 14.8 2.4 1 2 3e-05 0.06 13.9 0.3 39 120 312 394 253 396 0.74 Protein of unknown function (DUF2408) DUF2408 PF10303.9 135 CP017026_00010 - 498 0.032 14.8 2.4 2 2 0.56 1.1e+03 0.1 0.1 43 67 429 454 398 489 0.61 Protein of unknown function (DUF2408) Tup_N PF08581.10 77 CP017026_00010 - 498 0.065 13.5 2.3 1 4 2.7 5.3e+03 -2.2 0.0 45 61 158 174 157 177 0.82 Tup N-terminal Tup_N PF08581.10 77 CP017026_00010 - 498 0.065 13.5 2.3 2 4 4.2 8.4e+03 -2.8 0.0 19 48 244 273 229 276 0.72 Tup N-terminal Tup_N PF08581.10 77 CP017026_00010 - 498 0.065 13.5 2.3 3 4 0.0033 6.6 7.1 0.3 28 64 339 375 318 383 0.90 Tup N-terminal Tup_N PF08581.10 77 CP017026_00010 - 498 0.065 13.5 2.3 4 4 0.034 67 3.9 0.0 12 51 422 461 417 467 0.74 Tup N-terminal Mod_r PF07200.13 146 CP017026_00010 - 498 0.65 10.1 8.1 1 3 0.00031 0.62 10.2 0.4 54 101 334 383 293 387 0.76 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 CP017026_00010 - 498 0.65 10.1 8.1 2 3 0.094 1.9e+02 2.1 0.2 69 91 429 451 398 465 0.69 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 CP017026_00010 - 498 0.65 10.1 8.1 3 3 0.14 2.8e+02 1.5 1.6 18 57 451 490 427 498 0.33 Modifier of rudimentary (Mod(r)) protein SOAR PF16533.5 101 CP017026_00010 - 498 1.2 9.1 5.4 1 2 0.00078 1.5 8.8 0.1 50 97 326 373 300 376 0.81 STIM1 Orai1-activating region SOAR PF16533.5 101 CP017026_00010 - 498 1.2 9.1 5.4 2 2 0.35 6.9e+02 0.3 2.1 19 58 398 455 388 490 0.72 STIM1 Orai1-activating region DUF4407 PF14362.6 298 CP017026_00010 - 498 5.1 6.4 8.4 1 1 0.027 53 3.0 8.4 130 235 333 446 233 498 0.58 Domain of unknown function (DUF4407) AAA_25 PF13481.6 194 CP017026_00011 - 623 4.9e-30 104.5 0.0 1 1 8.5e-33 8.9e-30 103.7 0.0 11 193 306 475 297 476 0.87 AAA domain Toprim_2 PF13155.6 90 CP017026_00011 - 623 6.6e-18 64.9 0.0 1 2 2.4e-20 2.5e-17 63.1 0.0 1 90 189 278 189 278 0.91 Toprim-like Toprim_2 PF13155.6 90 CP017026_00011 - 623 6.6e-18 64.9 0.0 2 2 4.5 4.7e+03 -1.9 0.1 44 77 393 427 381 441 0.75 Toprim-like DUF3991 PF13154.6 76 CP017026_00011 - 623 3.3e-14 53.0 0.0 1 2 1.6e-16 1.7e-13 50.7 0.0 1 74 112 183 112 185 0.93 Protein of unknown function (DUF3991) DUF3991 PF13154.6 76 CP017026_00011 - 623 3.3e-14 53.0 0.0 2 2 2.8 3e+03 -1.3 0.0 6 19 589 602 587 620 0.71 Protein of unknown function (DUF3991) DnaB_C PF03796.15 255 CP017026_00011 - 623 8.6e-09 35.1 0.0 1 2 0.00037 0.39 10.0 0.0 19 45 329 355 326 366 0.87 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP017026_00011 - 623 8.6e-09 35.1 0.0 2 2 4.7e-08 4.9e-05 22.8 0.0 90 185 385 478 369 490 0.79 DnaB-like helicase C terminal domain Toprim_3 PF13362.6 95 CP017026_00011 - 623 1.8e-08 34.6 0.2 1 2 4.2e-10 4.4e-07 30.2 0.0 2 92 188 281 187 283 0.86 Toprim domain Toprim_3 PF13362.6 95 CP017026_00011 - 623 1.8e-08 34.6 0.2 2 2 0.46 4.8e+02 1.2 0.6 40 85 393 439 381 446 0.77 Toprim domain ATPase PF06745.13 231 CP017026_00011 - 623 7.2e-06 25.5 0.1 1 1 1.9e-07 0.0002 20.8 0.0 16 171 326 478 324 511 0.73 KaiC AAA_22 PF13401.6 137 CP017026_00011 - 623 0.0002 21.6 0.0 1 1 5.5e-07 0.00058 20.2 0.0 6 130 330 470 329 475 0.76 AAA domain NACHT PF05729.12 166 CP017026_00011 - 623 0.0033 17.4 0.0 1 2 1.1 1.1e+03 -0.7 0.0 43 71 6 33 3 43 0.76 NACHT domain NACHT PF05729.12 166 CP017026_00011 - 623 0.0033 17.4 0.0 2 2 2.5e-05 0.027 14.4 0.0 2 28 331 357 330 429 0.89 NACHT domain Toprim_4 PF13662.6 89 CP017026_00011 - 623 0.0078 16.7 0.0 1 1 2.5e-05 0.026 15.0 0.0 47 88 227 267 212 268 0.81 Toprim domain AAA_5 PF07728.14 138 CP017026_00011 - 623 0.018 15.0 0.0 1 1 6e-05 0.063 13.3 0.0 3 26 333 357 332 406 0.82 AAA domain (dynein-related subfamily) Rad51 PF08423.11 255 CP017026_00011 - 623 0.05 12.8 0.0 1 1 0.00051 0.54 9.5 0.0 34 190 326 475 324 494 0.69 Rad51 Toprim PF01751.22 103 CP017026_00011 - 623 0.051 13.8 0.0 1 1 0.00011 0.12 12.7 0.0 51 87 222 258 204 269 0.85 Toprim domain AAA_11 PF13086.6 261 CP017026_00011 - 623 0.065 13.0 0.0 1 2 0.24 2.6e+02 1.2 0.0 50 97 230 271 208 294 0.80 AAA domain AAA_11 PF13086.6 261 CP017026_00011 - 623 0.065 13.0 0.0 2 2 0.00095 1 9.1 0.0 18 43 330 355 320 400 0.76 AAA domain RNA_helicase PF00910.22 107 CP017026_00011 - 623 0.13 12.7 0.0 1 2 2.6 2.8e+03 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 CP017026_00011 - 623 0.13 12.7 0.0 2 2 0.00069 0.73 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase PhoH PF02562.16 205 CP017026_00011 - 623 0.17 11.3 0.0 1 1 0.00034 0.36 10.3 0.0 20 47 330 357 322 362 0.88 PhoH-like protein zf-CHC2 PF01807.20 98 CP017026_00011 - 623 0.18 11.7 0.0 1 1 0.00035 0.37 10.6 0.0 44 88 40 82 8 90 0.84 CHC2 zinc finger DUF2075 PF09848.9 363 CP017026_00011 - 623 0.2 10.8 0.0 1 1 0.00031 0.33 10.2 0.0 2 26 330 354 329 398 0.89 Uncharacterized conserved protein (DUF2075) IMS_C PF11799.8 118 CP017026_00012 - 236 1.1e-12 48.7 0.0 1 1 2.1e-16 1.9e-12 48.0 0.0 8 111 94 221 90 226 0.91 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 32 CP017026_00012 - 236 0.0002 21.5 0.0 1 2 7.5e-08 0.00067 19.8 0.1 6 32 19 46 16 46 0.92 IMS family HHH motif IMS_HHH PF11798.8 32 CP017026_00012 - 236 0.0002 21.5 0.0 2 2 1.6 1.4e+04 -3.2 0.0 17 28 79 90 79 92 0.79 IMS family HHH motif Cob_adeno_trans PF01923.18 164 CP017026_00015 - 130 0.014 15.6 0.1 1 1 9.4e-07 0.017 15.3 0.1 25 106 37 129 23 130 0.80 Cobalamin adenosyltransferase DUF3825 PF12873.7 239 CP017026_00016 - 335 4.2e-29 101.7 0.3 1 1 3.7e-33 6.7e-29 101.0 0.3 1 239 106 330 106 330 0.86 Domain of unknown function (DUF3825) DUF4795 PF16043.5 204 CP017026_00017 - 201 0.026 14.1 0.1 1 1 2.4e-06 0.043 13.4 0.1 60 124 45 109 31 174 0.86 Domain of unknown function (DUF4795) SGT1 PF07093.11 583 CP017026_00018 - 50 0.046 12.2 2.7 1 1 7.5e-06 0.045 12.2 2.7 511 553 7 49 1 50 0.79 SGT1 protein PG_binding_4 PF12229.8 114 CP017026_00018 - 50 0.057 13.7 1.0 1 1 1.1e-05 0.065 13.5 1.0 42 79 10 48 2 50 0.81 Putative peptidoglycan binding domain DUF2175 PF09943.9 98 CP017026_00018 - 50 0.077 13.3 1.2 1 1 1.4e-05 0.082 13.2 1.2 60 89 9 38 2 47 0.83 Uncharacterized protein conserved in archaea (DUF2175) DUF5309 PF17236.2 280 CP017026_00019 - 81 3e-05 23.5 0.5 1 1 1.8e-09 3.3e-05 23.4 0.5 4 53 24 74 21 81 0.82 Family of unknown function (DUF5309) HicA_toxin PF07927.12 58 CP017026_00020 - 75 1.7e-06 28.0 0.0 1 1 1.4e-10 2.5e-06 27.4 0.0 5 55 24 71 20 72 0.88 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 CP017026_00021 - 119 8.3e-09 35.6 0.3 1 2 4.2e-06 0.038 14.1 0.0 1 60 12 74 12 79 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 CP017026_00021 - 119 8.3e-09 35.6 0.3 2 2 3.9e-08 0.00035 20.7 0.1 88 123 77 108 72 108 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 CP017026_00021 - 119 0.15 11.9 0.0 1 1 3.3e-05 0.29 11.0 0.0 3 35 80 112 79 115 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 ParE_toxin PF05016.15 90 CP017026_00023 - 93 1.1e-07 32.4 0.1 1 1 6.6e-12 1.2e-07 32.3 0.1 4 82 6 85 3 89 0.87 ParE toxin of type II toxin-antitoxin system, parDE YafQ_toxin PF15738.5 88 CP017026_00025 - 91 8.9e-29 99.7 1.1 1 1 5.4e-33 9.7e-29 99.5 1.1 2 88 3 89 2 89 0.98 Bacterial toxin of type II toxin-antitoxin system, YafQ DUF4131 PF13567.6 167 CP017026_00026 - 106 0.00082 19.1 0.1 1 1 2.8e-07 0.001 18.8 0.1 3 83 19 97 17 100 0.70 Domain of unknown function (DUF4131) DUF981 PF06168.11 187 CP017026_00026 - 106 0.014 15.3 3.1 1 1 4.9e-06 0.018 15.0 3.1 120 175 10 66 5 73 0.87 Protein of unknown function (DUF981) Wzy_C PF04932.15 155 CP017026_00026 - 106 0.055 13.1 1.3 1 1 1.8e-05 0.064 12.9 1.3 19 65 24 71 19 96 0.81 O-Antigen ligase DUF2721 PF11026.8 129 CP017026_00026 - 106 0.068 13.1 3.9 1 1 2.4e-05 0.085 12.8 3.9 53 118 6 66 2 69 0.85 Protein of unknown function (DUF2721) DUF2663 PF10864.8 127 CP017026_00026 - 106 0.13 12.7 1.9 1 1 4.5e-05 0.16 12.4 1.9 8 80 9 81 2 86 0.64 Protein of unknown function (DUF2663) TraG_N PF07916.11 467 CP017026_00027 - 900 3e-39 135.2 20.8 1 4 1.7e-43 3e-39 135.2 20.8 38 465 23 446 1 452 0.78 TraG-like protein, N-terminal region TraG_N PF07916.11 467 CP017026_00027 - 900 3e-39 135.2 20.8 2 4 0.1 1.8e+03 -2.6 0.9 267 318 538 590 504 600 0.52 TraG-like protein, N-terminal region TraG_N PF07916.11 467 CP017026_00027 - 900 3e-39 135.2 20.8 3 4 0.077 1.4e+03 -2.2 2.0 246 312 686 748 651 775 0.48 TraG-like protein, N-terminal region TraG_N PF07916.11 467 CP017026_00027 - 900 3e-39 135.2 20.8 4 4 0.36 6.4e+03 -4.4 5.1 229 319 809 885 797 899 0.46 TraG-like protein, N-terminal region Glyco_tranf_2_5 PF13712.6 210 CP017026_00028 - 267 0.0018 18.0 4.5 1 1 1.9e-07 0.0035 17.1 4.5 4 77 114 190 111 198 0.85 Glycosyltransferase like family UvrA_DNA-bind PF17755.1 110 CP017026_00029 - 422 0.0008 19.7 0.3 1 2 1.9e-05 0.33 11.3 0.1 24 65 32 73 19 86 0.83 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 CP017026_00029 - 422 0.0008 19.7 0.3 2 2 0.00081 14 6.0 0.0 15 33 92 109 88 135 0.79 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 CP017026_00030 - 426 0.003 17.9 0.2 1 3 0.00012 2.1 8.7 0.1 24 65 36 77 30 90 0.84 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 CP017026_00030 - 426 0.003 17.9 0.2 2 3 0.00082 15 6.0 0.0 15 33 96 113 92 139 0.79 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 CP017026_00030 - 426 0.003 17.9 0.2 3 3 0.29 5.3e+03 -2.2 0.0 77 97 316 336 306 338 0.82 UvrA DNA-binding domain Ank_2 PF12796.7 83 CP017026_00033 - 313 1.4e-11 44.8 0.4 1 2 8e-08 0.00029 21.4 0.0 32 82 140 197 71 198 0.81 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 CP017026_00033 - 313 1.4e-11 44.8 0.4 2 2 3e-10 1.1e-06 29.2 0.1 5 80 142 235 138 238 0.78 Ankyrin repeats (3 copies) Ank_3 PF13606.6 31 CP017026_00033 - 313 5.4e-10 38.6 0.4 1 4 0.015 55 4.8 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 CP017026_00033 - 313 5.4e-10 38.6 0.4 2 4 0.026 92 4.1 0.0 10 29 142 160 134 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 CP017026_00033 - 313 5.4e-10 38.6 0.4 3 4 2.6e-06 0.0094 16.4 0.0 2 30 168 195 167 196 0.94 Ankyrin repeat Ank_3 PF13606.6 31 CP017026_00033 - 313 5.4e-10 38.6 0.4 4 4 0.0018 6.5 7.7 0.0 1 30 206 235 206 236 0.92 Ankyrin repeat Ank_4 PF13637.6 55 CP017026_00033 - 313 0.0016 19.0 0.1 1 4 0.84 3e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP017026_00033 - 313 0.0016 19.0 0.1 2 4 0.00017 0.63 10.7 0.0 13 55 146 188 134 188 0.78 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP017026_00033 - 313 0.0016 19.0 0.1 3 4 9e-05 0.32 11.6 0.0 2 55 169 228 168 228 0.84 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP017026_00033 - 313 0.0016 19.0 0.1 4 4 0.02 70 4.2 0.0 3 28 209 235 206 244 0.89 Ankyrin repeats (many copies) Ank PF00023.30 32 CP017026_00033 - 313 0.0035 17.7 0.0 1 3 0.023 84 3.9 0.0 10 25 142 158 130 166 0.83 Ankyrin repeat Ank PF00023.30 32 CP017026_00033 - 313 0.0035 17.7 0.0 2 3 0.031 1.1e+02 3.5 0.0 3 31 169 198 167 199 0.82 Ankyrin repeat Ank PF00023.30 32 CP017026_00033 - 313 0.0035 17.7 0.0 3 3 0.0048 17 6.0 0.0 15 28 221 235 206 238 0.69 Ankyrin repeat Ank_5 PF13857.6 56 CP017026_00033 - 313 0.016 15.5 0.1 1 4 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP017026_00033 - 313 0.016 15.5 0.1 2 4 0.00045 1.6 9.1 0.0 23 54 141 173 139 175 0.92 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP017026_00033 - 313 0.016 15.5 0.1 3 4 0.00063 2.3 8.7 0.0 1 46 153 198 153 211 0.91 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP017026_00033 - 313 0.016 15.5 0.1 4 4 1.8 6.6e+03 -2.4 0.0 32 53 224 243 214 244 0.66 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 CP017026_00034 - 567 1.6e-07 31.5 0.0 1 2 1 1.8e+04 -5.2 5.9 25 58 343 376 306 392 0.55 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 CP017026_00034 - 567 1.6e-07 31.5 0.0 2 2 9.1e-12 1.6e-07 31.5 0.0 13 84 416 489 397 491 0.81 Restriction endonuclease fold toxin 7 Ank_2 PF12796.7 83 CP017026_00035 - 317 1.6e-14 54.2 0.1 1 3 1 3.1e+03 -1.1 0.0 34 48 26 40 19 64 0.65 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 CP017026_00035 - 317 1.6e-14 54.2 0.1 2 3 9.3e-09 2.8e-05 24.6 0.0 25 82 134 202 72 203 0.67 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 CP017026_00035 - 317 1.6e-14 54.2 0.1 3 3 5.1e-12 1.5e-08 35.1 0.0 6 80 148 239 139 242 0.78 Ankyrin repeats (3 copies) Ank_3 PF13606.6 31 CP017026_00035 - 317 6.1e-10 38.5 0.0 1 4 0.033 98 4.0 0.0 8 26 77 97 72 101 0.82 Ankyrin repeat Ank_3 PF13606.6 31 CP017026_00035 - 317 6.1e-10 38.5 0.0 2 4 0.12 3.6e+02 2.3 0.0 12 29 149 165 137 167 0.81 Ankyrin repeat Ank_3 PF13606.6 31 CP017026_00035 - 317 6.1e-10 38.5 0.0 3 4 3.1e-07 0.00093 19.5 0.0 2 30 173 200 172 201 0.95 Ankyrin repeat Ank_3 PF13606.6 31 CP017026_00035 - 317 6.1e-10 38.5 0.0 4 4 0.0045 13 6.7 0.0 3 30 212 239 210 240 0.89 Ankyrin repeat Ank_4 PF13637.6 55 CP017026_00035 - 317 8.6e-06 26.2 0.0 1 3 1.3 3.8e+03 -1.4 0.0 8 21 78 93 71 104 0.57 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP017026_00035 - 317 8.6e-06 26.2 0.0 2 3 5.7e-07 0.0017 18.9 0.0 13 55 151 193 137 193 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP017026_00035 - 317 8.6e-06 26.2 0.0 3 3 0.043 1.3e+02 3.3 0.0 4 41 214 249 212 260 0.72 Ankyrin repeats (many copies) Ank PF00023.30 32 CP017026_00035 - 317 3.4e-05 24.1 0.0 1 3 0.036 1.1e+02 3.5 0.0 10 25 143 163 138 170 0.73 Ankyrin repeat Ank PF00023.30 32 CP017026_00035 - 317 3.4e-05 24.1 0.0 2 3 0.00084 2.5 8.7 0.0 2 31 173 203 172 204 0.87 Ankyrin repeat Ank PF00023.30 32 CP017026_00035 - 317 3.4e-05 24.1 0.0 3 3 0.0022 6.7 7.4 0.0 5 28 214 239 211 242 0.76 Ankyrin repeat Ank_5 PF13857.6 56 CP017026_00035 - 317 0.0018 18.6 0.3 1 5 0.31 9.3e+02 0.3 0.0 24 39 26 42 25 49 0.86 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP017026_00035 - 317 0.0018 18.6 0.3 2 5 0.69 2.1e+03 -0.8 0.0 26 42 83 100 77 102 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP017026_00035 - 317 0.0018 18.6 0.3 3 5 0.032 97 3.5 0.0 25 54 148 178 148 179 0.86 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP017026_00035 - 317 0.0018 18.6 0.3 4 5 4.3e-05 0.13 12.6 0.0 9 48 167 205 158 207 0.83 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP017026_00035 - 317 0.0018 18.6 0.3 5 5 2.9 8.6e+03 -2.7 0.0 37 54 233 248 228 250 0.47 Ankyrin repeats (many copies) APG17 PF04108.12 396 CP017026_00035 - 317 0.017 14.2 0.7 1 1 8e-06 0.024 13.8 0.7 91 160 1 77 1 101 0.71 Autophagy protein Apg17 DUF2345 PF10106.9 151 CP017026_00036 - 486 0.0046 16.8 2.2 1 1 2.7e-06 0.016 15.1 2.2 28 132 379 478 376 482 0.84 Uncharacterized protein conserved in bacteria (DUF2345) DUF3540 PF12059.8 199 CP017026_00036 - 486 0.029 14.2 0.9 1 2 0.079 4.7e+02 0.5 0.0 31 45 138 152 136 159 0.80 Protein of unknown function (DUF3540) DUF3540 PF12059.8 199 CP017026_00036 - 486 0.029 14.2 0.9 2 2 3.3e-05 0.2 11.5 0.2 60 128 387 454 381 467 0.85 Protein of unknown function (DUF3540) Gp5_C PF06715.12 24 CP017026_00036 - 486 0.094 12.9 0.1 1 5 3 1.8e+04 -4.0 0.7 11 17 227 233 225 235 0.43 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 CP017026_00036 - 486 0.094 12.9 0.1 2 5 1.6e-05 0.094 12.9 0.1 3 24 261 282 259 290 0.67 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 CP017026_00036 - 486 0.094 12.9 0.1 3 5 0.062 3.7e+02 1.6 0.0 13 24 335 346 334 346 0.89 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 CP017026_00036 - 486 0.094 12.9 0.1 4 5 0.19 1.2e+03 0.1 0.1 1 18 346 364 346 364 0.83 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 CP017026_00036 - 486 0.094 12.9 0.1 5 5 0.1 6.3e+02 0.9 0.1 8 17 370 379 363 381 0.68 Gp5 C-terminal repeat (3 copies) Bacteriocin_IIc PF10439.9 62 CP017026_00037 - 689 0.0019 18.2 10.8 1 2 4.5 1.4e+04 -3.7 0.3 27 36 34 43 28 45 0.52 Bacteriocin class II with double-glycine leader peptide Bacteriocin_IIc PF10439.9 62 CP017026_00037 - 689 0.0019 18.2 10.8 2 2 6.5e-07 0.0019 18.2 10.8 23 61 155 192 151 193 0.91 Bacteriocin class II with double-glycine leader peptide Gly-zipper_Omp PF13488.6 46 CP017026_00037 - 689 0.04 13.9 10.0 1 1 2.8e-05 0.084 12.9 10.0 8 36 161 191 161 199 0.66 Glycine zipper DUF3482 PF11981.8 294 CP017026_00037 - 689 0.1 12.0 1.3 1 1 6.9e-05 0.21 11.0 1.3 143 190 149 192 145 215 0.87 Domain of unknown function (DUF3482) Gly-zipper_YMGG PF13441.6 46 CP017026_00037 - 689 0.17 11.6 8.3 1 1 0.00012 0.36 10.6 8.3 12 40 161 190 152 195 0.82 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.15 42 CP017026_00037 - 689 1.4 8.9 12.1 1 1 0.00089 2.7 7.9 12.1 4 39 161 191 160 192 0.87 Glycine zipper 2TM domain DUF1269 PF06897.12 100 CP017026_00037 - 689 5.8 7.3 7.3 1 2 0.0045 13 6.1 5.6 3 35 162 192 160 210 0.81 Protein of unknown function (DUF1269) DUF1269 PF06897.12 100 CP017026_00037 - 689 5.8 7.3 7.3 2 2 1.2 3.7e+03 -1.7 0.0 40 93 307 357 299 362 0.61 Protein of unknown function (DUF1269) Phage_GPD PF05954.11 304 CP017026_00039 - 837 5.4e-18 65.3 0.0 1 1 9.6e-22 8.6e-18 64.7 0.0 21 281 72 360 45 376 0.76 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 CP017026_00039 - 837 0.11 12.1 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 CP017026_00039 - 837 0.11 12.1 0.0 2 2 0.00043 3.9 7.2 0.0 19 49 461 491 452 517 0.81 TCL1/MTCP1 family T6SS_TssG PF06996.11 299 CP017026_00040 - 302 1.9e-47 161.9 0.0 1 1 1.2e-51 2.2e-47 161.8 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG T6SS_TssF PF05947.12 603 CP017026_00041 - 573 2.3e-110 369.9 0.0 1 1 1.5e-114 2.6e-110 369.8 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF GPW_gp25 PF04965.14 95 CP017026_00042 - 130 1.2e-09 37.8 0.0 1 1 2.6e-13 1.5e-09 37.5 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 CP017026_00042 - 130 0.0076 16.1 0.3 1 1 1.6e-06 0.0097 15.8 0.3 93 159 20 87 6 92 0.89 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 CP017026_00042 - 130 0.051 13.0 0.1 1 2 2.1e-05 0.12 11.8 0.1 82 121 5 46 1 64 0.83 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 CP017026_00042 - 130 0.051 13.0 0.1 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 422 CP017026_00043 - 484 1e-169 564.9 0.0 1 1 1.3e-173 1.2e-169 564.6 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 CP017026_00043 - 484 0.096 12.7 0.8 1 3 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 CP017026_00043 - 484 0.096 12.7 0.8 2 3 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 CP017026_00043 - 484 0.096 12.7 0.8 3 3 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 155 CP017026_00044 - 161 1.2e-51 174.6 3.8 1 1 1.5e-55 1.3e-51 174.4 3.8 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 CP017026_00044 - 161 0.082 11.5 0.0 1 1 1.1e-05 0.099 11.2 0.0 171 227 55 111 40 127 0.90 Chitin synthase T6SS_VasJ PF16989.5 255 CP017026_00045 - 415 1.2e-12 47.9 0.0 1 1 3.9e-16 1.7e-12 47.3 0.0 3 153 176 323 174 408 0.84 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 CP017026_00045 - 415 0.00014 22.0 0.2 1 2 1.8e-07 0.0008 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 CP017026_00045 - 415 0.00014 22.0 0.2 2 2 0.31 1.4e+03 -0.6 0.0 47 71 185 209 162 212 0.83 ImpA, N-terminal, type VI secretion system PX PF00787.24 113 CP017026_00045 - 415 0.074 13.0 14.5 1 3 0.00025 1.1 9.2 2.4 31 111 33 130 20 131 0.67 PX domain PX PF00787.24 113 CP017026_00045 - 415 0.074 13.0 14.5 2 3 0.00084 3.8 7.5 0.2 16 112 155 275 132 276 0.68 PX domain PX PF00787.24 113 CP017026_00045 - 415 0.074 13.0 14.5 3 3 0.052 2.3e+02 1.8 0.7 22 97 316 396 296 404 0.70 PX domain TetR_C_24 PF17932.1 114 CP017026_00045 - 415 0.19 12.0 0.0 1 1 8.8e-05 0.4 11.0 0.0 20 68 71 119 62 132 0.87 Tetracyclin repressor-like, C-terminal domain T6SS-SciN PF12790.7 120 CP017026_00046 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 428 CP017026_00047 - 465 1.3e-112 376.6 0.0 1 1 8.6e-117 1.5e-112 376.4 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 205 CP017026_00048 - 257 1.1e-34 120.0 0.0 1 1 6.9e-39 1.2e-34 119.8 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_HCP PF05638.12 129 CP017026_00049 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 259 CP017026_00050 - 1175 6.2e-41 140.5 0.0 1 1 4.1e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 CP017026_00050 - 1175 5.9e-40 137.0 0.5 1 1 4.1e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 CP017026_00050 - 1175 8.2e-27 94.5 2.1 1 1 4.9e-30 1.3e-26 93.9 2.1 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 CP017026_00050 - 1175 0.0003 20.7 0.0 1 2 8.9e-06 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 CP017026_00050 - 1175 0.0003 20.7 0.0 2 2 0.047 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 CP017026_00050 - 1175 0.0011 19.0 0.1 1 2 1.7e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 CP017026_00050 - 1175 0.0011 19.0 0.1 2 2 4.1 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 CP017026_00050 - 1175 0.0033 17.1 5.0 1 3 1.4e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 CP017026_00050 - 1175 0.0033 17.1 5.0 2 3 0.078 2e+02 1.5 0.0 41 78 451 488 431 588 0.81 O-Antigen ligase Wzy_C PF04932.15 155 CP017026_00050 - 1175 0.0033 17.1 5.0 3 3 0.076 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 CP017026_00050 - 1175 0.055 13.2 0.1 1 2 0.00017 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 CP017026_00050 - 1175 0.055 13.2 0.1 2 2 0.72 1.8e+03 -1.3 0.0 22 37 841 856 831 873 0.75 P-loop containing region of AAA domain FHA PF00498.26 69 CP017026_00051 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 CP017026_00051 - 299 0.0007 19.9 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 CP017026_00051 - 299 0.0007 19.9 0.0 2 2 0.23 1.4e+03 -0.3 0.0 31 57 199 225 198 231 0.89 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 CP017026_00051 - 299 0.05 14.0 3.1 1 2 0.044 2.6e+02 2.1 0.1 18 58 107 147 105 150 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 CP017026_00051 - 299 0.05 14.0 3.1 2 2 7.4e-05 0.44 11.0 0.9 21 82 151 212 146 218 0.92 Ferredoxin-fold anticodon binding domain Y1_Tnp PF01797.16 121 CP017026_00054 - 158 8.8e-37 125.9 2.5 1 1 6.8e-41 1.2e-36 125.4 2.5 2 121 13 133 12 133 0.95 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 69 CP017026_00055 - 415 2.2e-22 78.7 1.3 1 1 2.3e-25 4.6e-22 77.7 1.3 1 69 324 393 324 393 0.98 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 CP017026_00055 - 415 5.9e-13 49.1 2.4 1 1 7.1e-16 1.4e-12 47.9 2.4 10 118 187 302 172 304 0.76 Probable transposase HTH_OrfB_IS605 PF12323.8 47 CP017026_00055 - 415 3.8e-10 39.1 2.8 1 1 4.2e-13 8.4e-10 38.0 2.8 1 46 1 47 1 48 0.95 Helix-turn-helix domain HypA PF01155.19 112 CP017026_00055 - 415 0.022 14.8 0.4 1 1 2.7e-05 0.053 13.5 0.4 19 96 298 380 281 391 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 4_1_CTD PF05902.13 107 CP017026_00055 - 415 0.058 13.5 0.1 1 3 0.00018 0.35 11.0 0.0 35 96 47 108 16 115 0.83 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 CP017026_00055 - 415 0.058 13.5 0.1 2 3 2 4e+03 -2.1 0.0 25 37 178 190 158 231 0.62 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 CP017026_00055 - 415 0.058 13.5 0.1 3 3 2.8 5.5e+03 -2.5 0.0 51 66 333 348 331 355 0.83 4.1 protein C-terminal domain (CTD) Zn_ribbon_17 PF17120.5 58 CP017026_00055 - 415 0.071 12.7 0.5 1 1 6.8e-05 0.14 11.8 0.5 4 32 351 384 348 395 0.81 Zinc-ribbon, C4HC2 type DUF1161 PF06649.12 52 CP017026_00055 - 415 0.12 12.6 0.8 1 1 0.00016 0.32 11.2 0.8 3 32 270 299 269 311 0.89 Protein of unknown function (DUF1161) Prok-RING_1 PF14446.6 54 CP017026_00055 - 415 0.16 11.9 3.2 1 1 0.00018 0.36 10.8 3.2 2 33 349 383 348 388 0.83 Prokaryotic RING finger family 1 Spt4 PF06093.13 77 CP017026_00055 - 415 0.82 9.8 4.4 1 2 3.3 6.5e+03 -2.7 0.0 55 70 78 93 76 98 0.76 Spt4/RpoE2 zinc finger Spt4 PF06093.13 77 CP017026_00055 - 415 0.82 9.8 4.4 2 2 0.00041 0.81 9.8 2.2 2 30 352 382 351 393 0.79 Spt4/RpoE2 zinc finger Fic PF02661.18 97 CP017026_00056 - 264 8.4e-24 84.3 0.1 1 1 2.3e-27 2.1e-23 83.0 0.1 2 96 95 191 94 192 0.96 Fic/DOC family S_layer_C PF05124.12 220 CP017026_00056 - 264 6.6 6.6 8.7 1 2 6.2e-05 0.56 10.2 2.0 12 114 2 116 1 132 0.69 S-layer like family, C-terminal region S_layer_C PF05124.12 220 CP017026_00056 - 264 6.6 6.6 8.7 2 2 0.065 5.8e+02 0.3 0.6 158 182 230 253 229 260 0.77 S-layer like family, C-terminal region Y1_Tnp PF01797.16 121 CP017026_00057 - 158 8.8e-37 125.9 2.5 1 1 6.8e-41 1.2e-36 125.4 2.5 2 121 13 133 12 133 0.95 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 69 CP017026_00058 - 415 2.2e-22 78.7 1.3 1 1 2.3e-25 4.6e-22 77.7 1.3 1 69 324 393 324 393 0.98 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 CP017026_00058 - 415 5.9e-13 49.1 2.4 1 1 7.1e-16 1.4e-12 47.9 2.4 10 118 187 302 172 304 0.76 Probable transposase HTH_OrfB_IS605 PF12323.8 47 CP017026_00058 - 415 3.8e-10 39.1 2.8 1 1 4.2e-13 8.4e-10 38.0 2.8 1 46 1 47 1 48 0.95 Helix-turn-helix domain HypA PF01155.19 112 CP017026_00058 - 415 0.022 14.8 0.4 1 1 2.7e-05 0.053 13.5 0.4 19 96 298 380 281 391 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 4_1_CTD PF05902.13 107 CP017026_00058 - 415 0.058 13.5 0.1 1 3 0.00018 0.35 11.0 0.0 35 96 47 108 16 115 0.83 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 CP017026_00058 - 415 0.058 13.5 0.1 2 3 2 4e+03 -2.1 0.0 25 37 178 190 158 231 0.62 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 CP017026_00058 - 415 0.058 13.5 0.1 3 3 2.8 5.5e+03 -2.5 0.0 51 66 333 348 331 355 0.83 4.1 protein C-terminal domain (CTD) Zn_ribbon_17 PF17120.5 58 CP017026_00058 - 415 0.071 12.7 0.5 1 1 6.8e-05 0.14 11.8 0.5 4 32 351 384 348 395 0.81 Zinc-ribbon, C4HC2 type DUF1161 PF06649.12 52 CP017026_00058 - 415 0.12 12.6 0.8 1 1 0.00016 0.32 11.2 0.8 3 32 270 299 269 311 0.89 Protein of unknown function (DUF1161) Prok-RING_1 PF14446.6 54 CP017026_00058 - 415 0.16 11.9 3.2 1 1 0.00018 0.36 10.8 3.2 2 33 349 383 348 388 0.83 Prokaryotic RING finger family 1 Spt4 PF06093.13 77 CP017026_00058 - 415 0.82 9.8 4.4 1 2 3.3 6.5e+03 -2.7 0.0 55 70 78 93 76 98 0.76 Spt4/RpoE2 zinc finger Spt4 PF06093.13 77 CP017026_00058 - 415 0.82 9.8 4.4 2 2 0.00041 0.81 9.8 2.2 2 30 352 382 351 393 0.79 Spt4/RpoE2 zinc finger Fic PF02661.18 97 CP017026_00059 - 264 8.4e-24 84.3 0.1 1 1 2.3e-27 2.1e-23 83.0 0.1 2 96 95 191 94 192 0.96 Fic/DOC family S_layer_C PF05124.12 220 CP017026_00059 - 264 6.6 6.6 8.7 1 2 6.2e-05 0.56 10.2 2.0 12 114 2 116 1 132 0.69 S-layer like family, C-terminal region S_layer_C PF05124.12 220 CP017026_00059 - 264 6.6 6.6 8.7 2 2 0.065 5.8e+02 0.3 0.6 158 182 230 253 229 260 0.77 S-layer like family, C-terminal region Y1_Tnp PF01797.16 121 CP017026_00060 - 158 8.8e-37 125.9 2.5 1 1 6.8e-41 1.2e-36 125.4 2.5 2 121 13 133 12 133 0.95 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 69 CP017026_00061 - 415 2.2e-22 78.7 1.3 1 1 2.3e-25 4.6e-22 77.7 1.3 1 69 324 393 324 393 0.98 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 CP017026_00061 - 415 5.9e-13 49.1 2.4 1 1 7.1e-16 1.4e-12 47.9 2.4 10 118 187 302 172 304 0.76 Probable transposase HTH_OrfB_IS605 PF12323.8 47 CP017026_00061 - 415 3.8e-10 39.1 2.8 1 1 4.2e-13 8.4e-10 38.0 2.8 1 46 1 47 1 48 0.95 Helix-turn-helix domain HypA PF01155.19 112 CP017026_00061 - 415 0.022 14.8 0.4 1 1 2.7e-05 0.053 13.5 0.4 19 96 298 380 281 391 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 4_1_CTD PF05902.13 107 CP017026_00061 - 415 0.058 13.5 0.1 1 3 0.00018 0.35 11.0 0.0 35 96 47 108 16 115 0.83 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 CP017026_00061 - 415 0.058 13.5 0.1 2 3 2 4e+03 -2.1 0.0 25 37 178 190 158 231 0.62 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 CP017026_00061 - 415 0.058 13.5 0.1 3 3 2.8 5.5e+03 -2.5 0.0 51 66 333 348 331 355 0.83 4.1 protein C-terminal domain (CTD) Zn_ribbon_17 PF17120.5 58 CP017026_00061 - 415 0.071 12.7 0.5 1 1 6.8e-05 0.14 11.8 0.5 4 32 351 384 348 395 0.81 Zinc-ribbon, C4HC2 type DUF1161 PF06649.12 52 CP017026_00061 - 415 0.12 12.6 0.8 1 1 0.00016 0.32 11.2 0.8 3 32 270 299 269 311 0.89 Protein of unknown function (DUF1161) Prok-RING_1 PF14446.6 54 CP017026_00061 - 415 0.16 11.9 3.2 1 1 0.00018 0.36 10.8 3.2 2 33 349 383 348 388 0.83 Prokaryotic RING finger family 1 Spt4 PF06093.13 77 CP017026_00061 - 415 0.82 9.8 4.4 1 2 3.3 6.5e+03 -2.7 0.0 55 70 78 93 76 98 0.76 Spt4/RpoE2 zinc finger Spt4 PF06093.13 77 CP017026_00061 - 415 0.82 9.8 4.4 2 2 0.00041 0.81 9.8 2.2 2 30 352 382 351 393 0.79 Spt4/RpoE2 zinc finger DUF3492 PF11997.8 268 CP017026_00062 - 671 0.19 11.4 2.9 1 1 5.5e-05 0.5 10.1 2.9 33 164 64 199 59 210 0.76 Domain of unknown function (DUF3492) CLZ PF16526.5 71 CP017026_00062 - 671 0.99 9.8 4.8 1 2 0.01 90 3.5 0.6 30 58 122 150 104 162 0.78 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CLZ PF16526.5 71 CP017026_00062 - 671 0.99 9.8 4.8 2 2 0.0012 11 6.5 0.2 22 56 530 564 522 570 0.86 C-terminal leucine zipper domain of cyclic nucleotide-gated channels MeMO_Hyd_G PF02964.16 161 CP017026_00063 - 476 0.078 13.0 0.7 1 2 1.9e-05 0.17 11.9 0.1 47 106 120 180 107 186 0.87 Methane monooxygenase, hydrolase gamma chain MeMO_Hyd_G PF02964.16 161 CP017026_00063 - 476 0.078 13.0 0.7 2 2 0.47 4.2e+03 -2.4 0.1 25 34 348 357 319 400 0.63 Methane monooxygenase, hydrolase gamma chain Vta1 PF04652.16 145 CP017026_00063 - 476 2.5 8.1 10.2 1 3 0.31 2.7e+03 -1.8 0.2 116 136 148 169 137 174 0.78 Vta1 like Vta1 PF04652.16 145 CP017026_00063 - 476 2.5 8.1 10.2 2 3 0.16 1.5e+03 -0.9 0.2 29 60 317 356 312 369 0.67 Vta1 like Vta1 PF04652.16 145 CP017026_00063 - 476 2.5 8.1 10.2 3 3 4.8e-06 0.043 13.8 1.0 8 79 392 467 384 470 0.79 Vta1 like DUF2974 PF11187.8 224 CP017026_00064 - 511 1.4e-06 28.0 0.0 1 1 1.5e-09 3.4e-06 26.8 0.0 6 109 79 192 75 260 0.72 Protein of unknown function (DUF2974) Lipase_3 PF01764.25 142 CP017026_00064 - 511 1e-05 25.4 0.0 1 1 2.1e-08 4.6e-05 23.3 0.0 45 107 148 218 108 243 0.78 Lipase (class 3) DUF676 PF05057.14 219 CP017026_00064 - 511 0.0019 17.7 0.0 1 1 2.1e-06 0.0046 16.5 0.0 70 116 158 205 129 247 0.73 Putative serine esterase (DUF676) PGAP1 PF07819.13 231 CP017026_00064 - 511 0.0036 17.0 0.1 1 2 5e-05 0.11 12.2 0.0 69 116 148 193 144 201 0.76 PGAP1-like protein PGAP1 PF07819.13 231 CP017026_00064 - 511 0.0036 17.0 0.1 2 2 0.06 1.4e+02 2.1 0.2 27 83 269 326 247 340 0.76 PGAP1-like protein DUF4450 PF14614.6 217 CP017026_00064 - 511 0.016 14.8 0.2 1 2 2.9 6.5e+03 -3.5 0.0 156 173 340 357 330 359 0.71 Domain of unknown function (DUF4450) DUF4450 PF14614.6 217 CP017026_00064 - 511 0.016 14.8 0.2 2 2 2.1e-05 0.047 13.3 0.1 6 48 446 488 443 495 0.94 Domain of unknown function (DUF4450) UPF0227 PF05728.12 187 CP017026_00064 - 511 0.028 14.4 0.1 1 2 9.1e-05 0.2 11.6 0.0 48 80 157 189 133 196 0.80 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 CP017026_00064 - 511 0.028 14.4 0.1 2 2 0.39 8.7e+02 -0.3 0.0 115 145 391 422 368 439 0.73 Uncharacterised protein family (UPF0227) PAF-AH_p_II PF03403.13 379 CP017026_00064 - 511 0.028 13.0 0.0 1 1 2.2e-05 0.05 12.1 0.0 185 244 120 184 94 210 0.77 Platelet-activating factor acetylhydrolase, isoform II Abhydrolase_6 PF12697.7 220 CP017026_00064 - 511 0.049 14.2 0.0 1 1 3.1e-05 0.069 13.7 0.0 49 86 148 189 103 236 0.62 Alpha/beta hydrolase family DUF2974 PF11187.8 224 CP017026_00065 - 202 0.00072 19.2 0.1 1 1 1.9e-07 0.0011 18.5 0.1 7 94 100 196 95 198 0.73 Protein of unknown function (DUF2974) DUF676 PF05057.14 219 CP017026_00065 - 202 0.044 13.3 0.0 1 1 1.4e-05 0.086 12.3 0.0 63 91 170 198 130 200 0.73 Putative serine esterase (DUF676) Lipase_3 PF01764.25 142 CP017026_00065 - 202 0.1 12.4 0.2 1 1 4.6e-05 0.28 11.1 0.1 50 75 172 196 121 197 0.77 Lipase (class 3) Put_DNA-bind_N PF06971.13 49 CP017026_00069 - 141 0.034 14.2 0.0 1 1 3.2e-06 0.058 13.4 0.0 11 34 4 27 3 30 0.94 Putative DNA-binding protein N-terminus AAA_31 PF13614.6 177 CP017026_00071 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 CP017026_00071 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 CP017026_00071 - 186 0.0021 18.1 0.9 1 1 2.9e-06 0.017 15.2 0.9 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP017026_00071 - 186 0.014 14.8 0.0 1 1 3.2e-06 0.019 14.4 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase RHH_7 PF16777.5 74 CP017026_00072 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_25 PF13481.6 194 CP017026_00073 - 597 4.8e-15 55.7 0.0 1 1 5.6e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 CP017026_00073 - 597 0.0003 20.2 0.0 1 2 9.8e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP017026_00073 - 597 0.0003 20.2 0.0 2 2 0.013 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP017026_00073 - 597 0.0023 17.7 0.0 1 2 7.2e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP017026_00073 - 597 0.0023 17.7 0.0 2 2 0.7 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 CP017026_00073 - 597 0.0091 15.4 0.4 1 3 3.7e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 CP017026_00073 - 597 0.0091 15.4 0.4 2 3 0.81 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC ATPase PF06745.13 231 CP017026_00073 - 597 0.0091 15.4 0.4 3 3 2.1 4.2e+03 -3.2 0.1 64 122 377 434 373 452 0.51 KaiC AAA PF00004.29 132 CP017026_00073 - 597 0.021 15.2 0.5 1 3 0.00017 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP017026_00073 - 597 0.021 15.2 0.5 2 3 0.33 6.7e+02 0.7 0.0 47 74 411 434 377 455 0.71 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP017026_00073 - 597 0.021 15.2 0.5 3 3 4.5 9e+03 -3.0 0.0 23 49 495 523 475 527 0.69 ATPase family associated with various cellular activities (AAA) ApoC-I PF04691.12 61 CP017026_00073 - 597 0.16 11.9 3.3 1 3 0.0026 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP017026_00073 - 597 0.16 11.9 3.3 2 3 0.22 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP017026_00073 - 597 0.16 11.9 3.3 3 3 0.2 4e+02 1.0 0.1 7 23 519 535 516 541 0.76 Apolipoprotein C-I (ApoC-1) CbiA PF01656.23 128 CP017026_00073 - 597 0.24 11.4 2.2 1 1 0.00053 1.1 9.4 2.2 1 29 35 63 35 548 0.91 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 CP017026_00073 - 597 0.7 9.5 5.5 1 2 0.0067 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 CP017026_00073 - 597 0.7 9.5 5.5 2 2 0.0087 17 5.1 1.5 16 28 517 529 511 531 0.91 VASP tetramerisation domain DUF1947 PF09183.10 66 CP017026_00073 - 597 0.73 10.2 6.3 1 2 0.15 3e+02 1.8 0.2 23 46 245 269 237 271 0.78 Domain of unknown function (DUF1947) DUF1947 PF09183.10 66 CP017026_00073 - 597 0.73 10.2 6.3 2 2 0.00085 1.7 9.0 1.7 7 42 517 550 515 567 0.87 Domain of unknown function (DUF1947) HicA_toxin PF07927.12 58 CP017026_00074 - 67 6.1e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 CP017026_00075 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 CP017026_00077 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 CP017026_00077 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 CP017026_00077 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) nec1 PF10379.9 184 CP017026_00078 - 70 0.036 13.6 0.0 1 1 2.2e-06 0.039 13.5 0.0 65 105 29 67 8 69 0.74 Virulence protein nec1 Toprim_3 PF13362.6 95 CP017026_00080 - 406 3.2e-08 33.8 0.0 1 1 1.7e-11 6.2e-08 32.9 0.0 3 93 270 374 268 376 0.87 Toprim domain Toprim_4 PF13662.6 89 CP017026_00080 - 406 0.12 12.9 0.1 1 1 7.1e-05 0.25 11.8 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 CP017026_00080 - 406 0.12 13.0 3.6 1 2 0.037 1.3e+02 3.2 0.4 52 85 140 172 121 201 0.70 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP017026_00080 - 406 0.12 13.0 3.6 2 2 0.00034 1.2 9.8 0.2 15 80 321 382 319 402 0.70 5'-3' exonuclease, C-terminal SAM fold Paz_1 PF18349.1 93 CP017026_00080 - 406 0.12 12.3 0.9 1 2 9.2e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Paz_1 PF18349.1 93 CP017026_00080 - 406 0.12 12.3 0.9 2 2 2.7 9.6e+03 -3.4 0.0 36 42 237 243 223 260 0.57 PAZ domain TSC21 PF15217.6 180 CP017026_00080 - 406 0.17 11.8 0.2 1 1 8.2e-05 0.29 11.0 0.2 38 86 145 193 129 208 0.83 TSC21 family CdvA PF18822.1 123 CP017026_00082 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP017026_00082 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 CP017026_00082 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 CP017026_00082 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 CP017026_00082 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 CP017026_00083 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP017026_00083 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP017026_00083 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP017026_00083 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP017026_00083 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP017026_00083 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP017026_00083 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 CP017026_00083 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP017026_00083 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 CP017026_00083 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP017026_00083 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain Relaxase PF03432.14 242 CP017026_00084 - 462 3.7e-10 39.8 7.6 1 2 2.1e-14 3.7e-10 39.8 7.6 47 229 118 297 70 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP017026_00084 - 462 3.7e-10 39.8 7.6 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain Peptidase_C39 PF03412.15 133 CP017026_00086 - 188 4.3e-18 65.4 0.0 1 1 9.4e-22 5.6e-18 65.0 0.0 2 124 24 153 23 167 0.81 Peptidase C39 family Peptidase_C70 PF12385.8 145 CP017026_00086 - 188 9.8e-05 22.4 0.0 1 1 2.4e-08 0.00014 21.9 0.0 11 131 28 138 11 149 0.78 Papain-like cysteine protease AvrRpt2 Peptidase_C39_2 PF13529.6 144 CP017026_00086 - 188 0.046 14.3 0.0 1 1 1.7e-05 0.099 13.2 0.0 6 143 27 134 22 135 0.72 Peptidase_C39 like family GramPos_pilinBB PF16569.5 115 CP017026_00089 - 236 0.016 16.0 3.9 1 2 2.1e-05 0.19 12.6 1.9 56 113 16 74 2 75 0.79 Gram-positive pilin backbone subunit 2, Cna-B-like domain GramPos_pilinBB PF16569.5 115 CP017026_00089 - 236 0.016 16.0 3.9 2 2 0.016 1.4e+02 3.3 0.0 23 66 113 157 95 188 0.77 Gram-positive pilin backbone subunit 2, Cna-B-like domain DUF2768 PF10966.8 58 CP017026_00089 - 236 0.052 14.0 0.6 1 1 1.2e-05 0.11 13.0 0.6 23 52 205 234 203 235 0.91 Protein of unknown function (DUF2768) SNF2_N PF00176.23 350 CP017026_00090 - 1932 2.6e-16 59.3 1.7 1 3 1.2e-19 4.4e-16 58.5 0.1 57 245 1018 1273 935 1314 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP017026_00090 - 1932 2.6e-16 59.3 1.7 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP017026_00090 - 1932 2.6e-16 59.3 1.7 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 CP017026_00090 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.2e+03 -3.4 0.2 54 75 649 690 638 782 0.55 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP017026_00090 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP017026_00090 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP017026_00090 - 1932 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP017026_00090 - 1932 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP017026_00090 - 1932 7.6e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 CP017026_00090 - 1932 7.6e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP017026_00090 - 1932 2.2e-05 24.9 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 372 472 370 475 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP017026_00090 - 1932 2.2e-05 24.9 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 CP017026_00091 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 CP017026_00092 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP017026_00092 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP017026_00092 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP017026_00092 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP017026_00092 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP017026_00092 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 CP017026_00093 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP017026_00093 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 CP017026_00094 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP017026_00094 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP017026_00094 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP017026_00094 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP017026_00094 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP017026_00094 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 CP017026_00095 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 CP017026_00095 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP017026_00095 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 CP017026_00095 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 CP017026_00095 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 CP017026_00095 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 CP017026_00095 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP017026_00095 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP017026_00095 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 CP017026_00096 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CP017026_00096 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain CtsR_C PF17727.1 72 CP017026_00097 - 120 0.047 13.8 0.3 1 2 0.00025 4.4 7.5 0.0 3 38 25 60 22 67 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP017026_00097 - 120 0.047 13.8 0.3 2 2 0.0022 40 4.4 0.0 28 48 68 88 65 102 0.85 CtsR C-terminal dimerization domain W2 PF02020.18 79 CP017026_00098 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 CP017026_00098 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 CP017026_00098 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain GTP_EFTU PF00009.27 194 CP017026_00101 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP017026_00101 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP017026_00101 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP017026_00101 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP017026_00101 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP017026_00101 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP017026_00101 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP017026_00101 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP017026_00101 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP017026_00101 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 CP017026_00103 - 351 1.2e-05 25.3 2.3 1 1 3.6e-09 3.2e-05 23.8 2.3 3 133 208 334 206 344 0.67 PcfJ-like protein Intein_splicing PF14890.6 134 CP017026_00103 - 351 0.03 14.3 4.7 1 2 0.1 9.3e+02 -0.3 0.1 11 60 95 149 88 152 0.72 Intein splicing domain Intein_splicing PF14890.6 134 CP017026_00103 - 351 0.03 14.3 4.7 2 2 3.3e-06 0.03 14.3 1.1 37 125 195 322 161 330 0.74 Intein splicing domain Topoisom_bac PF01131.20 413 CP017026_00105 - 730 9e-97 324.7 8.0 1 1 1.2e-99 1.3e-96 324.2 8.0 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP017026_00105 - 730 9.7e-12 45.0 0.1 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP017026_00105 - 730 9.7e-12 45.0 0.1 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 CP017026_00105 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP017026_00105 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP017026_00105 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP017026_00105 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP017026_00105 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CP017026_00105 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP017026_00105 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CP017026_00105 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP017026_00105 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 CP017026_00105 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 CP017026_00105 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain EF-hand_8 PF13833.6 55 CP017026_00105 - 730 0.052 13.4 0.2 1 2 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair EF-hand_8 PF13833.6 55 CP017026_00105 - 730 0.052 13.4 0.2 2 2 1.7 1.8e+03 -1.2 0.0 24 36 342 354 332 355 0.83 EF-hand domain pair zf-C2H2_4 PF13894.6 24 CP017026_00105 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP017026_00105 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CP017026_00105 - 730 0.086 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP017026_00105 - 730 0.086 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 CP017026_00105 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP017026_00105 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 CP017026_00105 - 730 0.38 11.0 3.0 1 3 1.9 2e+03 -1.0 0.0 26 47 362 383 354 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP017026_00105 - 730 0.38 11.0 3.0 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP017026_00105 - 730 0.38 11.0 3.0 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 CP017026_00105 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 CP017026_00105 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 CP017026_00105 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP017026_00105 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 CP017026_00105 - 730 0.76 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 CP017026_00105 - 730 0.76 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 CP017026_00105 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 CP017026_00105 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 CP017026_00105 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 CP017026_00105 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type DUF1461 PF07314.11 189 CP017026_00106 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) CdhD PF03599.16 386 CP017026_00107 - 206 0.004 15.9 0.0 1 1 7.2e-07 0.0064 15.2 0.0 283 358 11 87 2 96 0.88 CO dehydrogenase/acetyl-CoA synthase delta subunit Redoxin PF08534.10 147 CP017026_00107 - 206 0.056 13.2 0.7 1 2 0.065 5.9e+02 0.1 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP017026_00107 - 206 0.056 13.2 0.7 2 2 3.9e-05 0.35 10.6 0.1 49 76 144 173 138 191 0.79 Redoxin PRELI PF04707.14 157 CP017026_00108 - 265 0.044 13.6 0.3 1 2 0.33 2e+03 -1.5 0.1 94 133 10 45 4 72 0.50 PRELI-like family PRELI PF04707.14 157 CP017026_00108 - 265 0.044 13.6 0.3 2 2 7.4e-06 0.044 13.6 0.3 96 155 83 147 78 149 0.87 PRELI-like family TACC_C PF05010.14 201 CP017026_00108 - 265 1.3 8.8 9.6 1 2 0.00056 3.3 7.4 8.5 14 124 2 111 1 135 0.79 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 CP017026_00108 - 265 1.3 8.8 9.6 2 2 0.053 3.2e+02 1.0 1.1 8 45 100 139 94 148 0.70 Transforming acidic coiled-coil-containing protein (TACC), C-terminal IFT20 PF14931.6 119 CP017026_00108 - 265 4.9 7.3 10.2 1 3 0.081 4.9e+02 0.9 0.3 20 47 18 45 2 56 0.57 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 CP017026_00108 - 265 4.9 7.3 10.2 2 3 0.00026 1.5 9.0 0.5 25 53 89 117 81 120 0.91 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 CP017026_00108 - 265 4.9 7.3 10.2 3 3 0.027 1.6e+02 2.4 0.3 22 43 119 140 115 164 0.78 Intraflagellar transport complex B, subunit 20 TrbM PF07424.11 156 CP017026_00109 - 252 3.9e-38 130.8 2.1 1 1 5.6e-42 5e-38 130.5 2.1 1 154 25 190 25 192 0.88 TrbM HpaB PF03241.13 202 CP017026_00109 - 252 0.17 10.9 0.1 1 2 0.047 4.2e+02 -0.1 0.0 20 39 17 36 4 37 0.76 4-hydroxyphenylacetate 3-hydroxylase C terminal HpaB PF03241.13 202 CP017026_00109 - 252 0.17 10.9 0.1 2 2 0.00011 1 8.4 0.0 56 101 116 161 102 164 0.88 4-hydroxyphenylacetate 3-hydroxylase C terminal Cag12 PF13117.6 97 CP017026_00110 - 143 2.9e-16 59.8 0.3 1 1 4.1e-20 3.7e-16 59.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 CP017026_00110 - 143 0.078 12.8 0.4 1 1 2.3e-05 0.2 11.4 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) T4SS-DNA_transf PF02534.14 469 CP017026_00111 - 567 6.8e-104 348.3 0.1 1 1 1.5e-107 9.2e-104 347.8 0.1 3 460 58 527 46 535 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP017026_00111 - 567 3.1e-24 85.3 0.0 1 1 1e-27 6.1e-24 84.4 0.0 2 125 370 492 369 493 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP017026_00111 - 567 2.6e-15 56.3 0.0 1 2 1.1e-06 0.0065 15.4 0.0 41 157 113 241 89 262 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP017026_00111 - 567 2.6e-15 56.3 0.0 2 2 8.6e-14 5.1e-10 38.8 0.0 187 369 311 495 274 507 0.81 Type IV secretion-system coupling protein DNA-binding domain T2SSE PF00437.20 273 CP017026_00112 - 335 7.7e-55 185.9 0.0 1 1 1.5e-57 8.9e-55 185.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP017026_00112 - 335 7.4e-05 23.3 0.0 1 1 2.6e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP017026_00112 - 335 0.00012 21.6 0.0 1 1 3e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP017026_00112 - 335 0.00028 20.5 0.0 1 1 8.8e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP017026_00112 - 335 0.0014 18.9 0.0 1 1 4.5e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 CP017026_00112 - 335 0.0014 18.4 0.0 1 1 3.9e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 CP017026_00112 - 335 0.0023 17.7 0.0 1 1 9.2e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 CP017026_00112 - 335 0.0035 17.3 0.0 1 1 1.2e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP017026_00112 - 335 0.0055 15.7 0.0 1 1 1.3e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 CP017026_00112 - 335 0.0073 16.2 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP017026_00112 - 335 0.0087 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP017026_00112 - 335 0.0092 15.9 0.0 1 1 2.3e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 CP017026_00112 - 335 0.019 15.1 0.0 1 1 6.1e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain AAA_14 PF13173.6 131 CP017026_00112 - 335 0.02 14.9 0.1 1 2 3 1.8e+03 -1.1 0.0 73 104 35 65 15 73 0.83 AAA domain AAA_14 PF13173.6 131 CP017026_00112 - 335 0.02 14.9 0.1 2 2 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain TrwB_AAD_bind PF10412.9 386 CP017026_00112 - 335 0.021 13.8 0.0 1 1 5.9e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.6 61 CP017026_00112 - 335 0.024 14.4 0.0 1 1 8.8e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain ResIII PF04851.15 171 CP017026_00112 - 335 0.026 14.5 0.0 1 1 9.1e-05 0.053 13.5 0.0 5 50 147 186 132 244 0.73 Type III restriction enzyme, res subunit Sigma54_activat PF00158.26 168 CP017026_00112 - 335 0.026 14.2 0.0 1 1 9.3e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 CP017026_00112 - 335 0.031 13.7 0.0 1 1 0.0001 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein ATP_bind_1 PF03029.17 241 CP017026_00112 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 CP017026_00112 - 335 0.045 14.1 0.0 1 1 0.00018 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 CP017026_00112 - 335 0.045 13.0 0.0 1 1 0.00013 0.077 12.3 0.0 14 49 158 193 146 207 0.84 Zeta toxin PRK PF00485.18 197 CP017026_00112 - 335 0.057 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP017026_00112 - 335 0.065 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP017026_00112 - 335 0.074 13.4 0.0 1 1 0.00019 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 CP017026_00112 - 335 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 CP017026_00112 - 335 0.1 12.6 0.5 1 1 0.00042 0.25 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 CP017026_00112 - 335 0.11 12.4 0.1 1 1 0.0004 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP017026_00112 - 335 0.15 11.7 0.0 1 1 0.00041 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP017026_00112 - 335 0.15 11.8 0.0 1 1 0.00042 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 CP017026_00112 - 335 0.44 11.0 4.2 1 2 2.5 1.5e+03 -0.5 0.1 68 130 84 150 40 162 0.62 AAA domain AAA_23 PF13476.6 200 CP017026_00112 - 335 0.44 11.0 4.2 2 2 0.00057 0.33 11.4 1.4 22 37 163 178 151 184 0.88 AAA domain TrbI PF03743.14 187 CP017026_00113 - 393 7.4e-48 162.9 0.1 1 2 0.6 5.4e+03 -3.0 0.4 123 155 136 168 119 173 0.53 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 CP017026_00113 - 393 7.4e-48 162.9 0.1 2 2 8.2e-52 7.4e-48 162.9 0.1 1 187 196 377 196 377 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP017026_00113 - 393 0.044 12.9 0.1 1 1 7.7e-06 0.069 12.2 0.1 29 81 322 374 303 379 0.85 HaeIII restriction endonuclease CagX PF03524.15 211 CP017026_00114 - 297 4.5e-56 189.9 2.1 1 1 7.9e-60 7.1e-56 189.3 2.1 2 211 32 272 31 272 0.92 Conjugal transfer protein TraE PF05309.11 182 CP017026_00114 - 297 0.021 14.2 0.1 1 1 4.4e-06 0.04 13.3 0.1 107 171 90 155 87 162 0.83 TraE protein VirB8 PF04335.13 214 CP017026_00115 - 219 1.6e-52 178.4 0.4 1 1 2e-56 1.8e-52 178.3 0.4 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 CP017026_00115 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 CP017026_00116 - 54 0.034 13.1 1.0 1 1 5.2e-06 0.031 13.2 1.0 3 25 3 24 1 53 0.80 Treponema clustered lipoprotein (Trep_dent_lipo) La_HTH_kDCL PF18177.1 90 CP017026_00116 - 54 0.19 12.0 0.0 1 1 3.6e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain PsbT PF01405.17 29 CP017026_00116 - 54 1.1 9.1 5.2 1 1 0.00027 1.6 8.6 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 CP017026_00117 - 331 2.1e-30 106.1 33.3 1 2 3.5e-34 2.1e-30 106.1 33.3 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP017026_00117 - 331 2.1e-30 106.1 33.3 2 2 0.75 4.5e+03 -2.8 0.1 84 84 289 289 259 327 0.50 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP017026_00117 - 331 0.065 13.0 0.9 1 2 0.4 2.4e+03 -1.6 0.1 39 51 70 82 61 114 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP017026_00117 - 331 0.065 13.0 0.9 2 2 3.6e-05 0.22 11.4 0.1 37 81 243 287 222 299 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 CP017026_00117 - 331 0.17 11.9 0.0 1 1 5.1e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) T4SS PF07996.11 197 CP017026_00118 - 329 1.8e-28 100.3 13.3 1 1 5.5e-32 2.5e-28 99.9 13.3 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 CP017026_00118 - 329 0.0035 17.5 0.5 1 2 0.27 1.2e+03 -0.3 0.0 30 54 134 158 120 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP017026_00118 - 329 0.0035 17.5 0.5 2 2 4.7e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 CP017026_00118 - 329 0.017 15.7 0.9 1 2 1.3 6e+03 -2.1 0.0 55 70 124 139 101 163 0.57 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP017026_00118 - 329 0.017 15.7 0.9 2 2 8.1e-06 0.036 14.7 0.2 31 84 208 270 197 307 0.84 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 CP017026_00118 - 329 0.5 11.1 11.4 1 2 0.042 1.9e+02 2.7 0.8 49 135 108 145 95 182 0.47 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP017026_00118 - 329 0.5 11.1 11.4 2 2 9.1e-05 0.41 11.3 4.5 49 116 225 306 205 328 0.68 Apoptosis antagonizing transcription factor IF2_N PF04760.15 54 CP017026_00119 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP017026_00119 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP017026_00119 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP017026_00119 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP017026_00119 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP017026_00119 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP017026_00119 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 CP017026_00120 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family PBECR2 PF18810.1 119 CP017026_00121 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 Phage_pRha PF09669.10 88 CP017026_00122 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 CP017026_00122 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 CP017026_00122 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) CagE_TrbE_VirB PF03135.14 206 CP017026_00123 - 922 6.9e-51 173.3 0.4 1 1 1.8e-54 1.6e-50 172.1 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP017026_00123 - 922 3.6e-21 75.2 0.8 1 1 6.9e-25 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein TrbC PF04956.13 99 CP017026_00124 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP017026_00124 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 CP017026_00126 - 135 0.00056 20.0 0.0 1 1 8.6e-08 0.0015 18.6 0.0 5 53 8 71 5 106 0.81 CRISPR associated protein Cas2 Resolvase PF00239.21 146 CP017026_00127 - 204 1.4e-33 116.0 0.8 1 1 3.3e-37 2e-33 115.6 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_Mga PF08280.11 60 CP017026_00127 - 204 0.03 14.4 4.9 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP017026_00127 - 204 0.03 14.4 4.9 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP017026_00127 - 204 0.03 14.4 4.9 3 3 0.0097 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain HTH_38 PF13936.6 44 CP017026_00127 - 204 0.042 13.6 0.8 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 CP017026_00127 - 204 0.042 13.6 0.8 2 3 0.00081 4.9 7.0 0.1 2 34 117 150 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 CP017026_00127 - 204 0.042 13.6 0.8 3 3 0.0074 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain RepL PF05732.11 165 CP017026_00128 - 107 5.2e-17 61.8 0.0 1 1 3.7e-20 6e-17 61.6 0.0 40 135 2 100 1 105 0.89 Firmicute plasmid replication protein (RepL) HTH_5 PF01022.20 47 CP017026_00128 - 107 6.3e-05 22.8 0.0 1 1 6.3e-08 0.0001 22.1 0.0 17 47 42 72 41 72 0.94 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 68 CP017026_00128 - 107 0.00012 22.0 0.0 1 1 9.4e-08 0.00015 21.6 0.0 19 56 38 76 25 83 0.76 Crp-like helix-turn-helix domain DUF4423 PF14394.6 168 CP017026_00128 - 107 0.00096 18.9 0.0 1 1 7e-07 0.0011 18.7 0.0 37 84 41 86 32 104 0.85 Domain of unknown function (DUF4423) HTH_11 PF08279.12 55 CP017026_00128 - 107 0.0036 17.2 0.0 1 1 3.3e-06 0.0053 16.7 0.0 17 50 42 74 27 78 0.86 HTH domain MarR PF01047.22 59 CP017026_00128 - 107 0.0037 17.2 0.0 1 1 3.3e-06 0.0054 16.6 0.0 19 52 42 75 32 76 0.90 MarR family MarR_2 PF12802.7 62 CP017026_00128 - 107 0.0046 16.8 0.0 1 1 3.7e-06 0.0061 16.4 0.0 23 56 42 75 22 76 0.80 MarR family HTH_20 PF12840.7 61 CP017026_00128 - 107 0.0048 16.9 0.0 1 1 4.2e-06 0.0068 16.4 0.0 26 59 42 75 41 77 0.93 Helix-turn-helix domain Rrf2 PF02082.20 83 CP017026_00128 - 107 0.023 15.0 0.0 1 1 2.1e-05 0.035 14.5 0.0 8 59 22 74 17 83 0.80 Transcriptional regulator TrmB PF01978.19 68 CP017026_00128 - 107 0.028 14.3 0.0 1 1 2.5e-05 0.04 13.8 0.0 23 58 41 76 40 87 0.90 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.10 121 CP017026_00128 - 107 0.038 13.9 0.1 1 1 2.4e-05 0.038 13.9 0.1 52 108 39 95 2 106 0.83 N-terminal phage replisome organiser (Phage_rep_org_N) CRISPR_Cas2 PF09827.9 76 CP017026_00129 - 95 1.6e-11 44.2 0.1 1 1 2.3e-15 2e-11 43.9 0.1 2 73 1 86 1 88 0.80 CRISPR associated protein Cas2 Citrate_ly_lig PF08218.11 182 CP017026_00129 - 95 0.093 12.4 0.0 1 1 1.2e-05 0.11 12.2 0.0 83 153 15 88 10 94 0.82 Citrate lyase ligase C-terminal domain TIR_2 PF13676.6 118 CP017026_00130 - 408 2.1e-05 25.1 0.1 1 1 1.4e-08 8.4e-05 23.2 0.1 1 83 269 354 269 385 0.79 TIR domain DUF1863 PF08937.11 130 CP017026_00130 - 408 0.012 16.0 1.2 1 3 0.16 9.6e+02 0.1 3.0 16 71 90 143 62 146 0.73 MTH538 TIR-like domain (DUF1863) DUF1863 PF08937.11 130 CP017026_00130 - 408 0.012 16.0 1.2 2 3 0.74 4.4e+03 -2.1 0.1 6 38 209 232 207 265 0.49 MTH538 TIR-like domain (DUF1863) DUF1863 PF08937.11 130 CP017026_00130 - 408 0.012 16.0 1.2 3 3 2e-06 0.012 16.0 1.2 1 103 267 358 267 363 0.69 MTH538 TIR-like domain (DUF1863) T_Ag_DNA_bind PF02217.16 94 CP017026_00130 - 408 2.7 8.6 7.4 1 2 2.9 1.7e+04 -3.6 0.3 32 48 88 105 84 120 0.48 Origin of replication binding protein T_Ag_DNA_bind PF02217.16 94 CP017026_00130 - 408 2.7 8.6 7.4 2 2 3.2e-05 0.19 12.3 1.8 13 83 176 245 168 247 0.92 Origin of replication binding protein DUF1899 PF08953.11 66 CP017026_00131 - 138 0.095 12.6 0.1 1 2 0.43 3.8e+03 -2.2 0.0 38 47 46 55 39 56 0.77 Domain of unknown function (DUF1899) DUF1899 PF08953.11 66 CP017026_00131 - 138 0.095 12.6 0.1 2 2 3e-05 0.27 11.1 0.0 21 42 77 98 71 100 0.92 Domain of unknown function (DUF1899) XhlA PF10779.9 67 CP017026_00131 - 138 0.12 12.6 1.7 1 1 2.7e-05 0.25 11.6 1.7 22 61 2 45 1 47 0.87 Haemolysin XhlA AAA_25 PF13481.6 194 CP017026_00132 - 599 5.2e-16 58.8 0.0 1 1 4.4e-19 1.1e-15 57.7 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 CP017026_00132 - 599 0.00056 19.3 0.0 1 1 1.7e-06 0.0044 16.4 0.0 16 111 30 130 25 180 0.85 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP017026_00132 - 599 0.0015 18.3 0.0 1 2 9.4e-06 0.024 14.4 0.0 46 85 32 71 21 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP017026_00132 - 599 0.0015 18.3 0.0 2 2 0.15 3.9e+02 0.7 0.0 96 118 108 130 98 168 0.75 IstB-like ATP binding protein AAA_24 PF13479.6 197 CP017026_00132 - 599 0.0044 16.8 0.0 1 1 3.7e-06 0.0095 15.7 0.0 5 91 36 144 32 206 0.72 AAA domain ATPase PF06745.13 231 CP017026_00132 - 599 0.0061 15.9 0.1 1 2 1.8e-05 0.046 13.1 0.0 16 71 30 84 23 214 0.76 KaiC ATPase PF06745.13 231 CP017026_00132 - 599 0.0061 15.9 0.1 2 2 0.65 1.7e+03 -1.9 0.0 137 160 329 352 322 358 0.84 KaiC AAA PF00004.29 132 CP017026_00132 - 599 0.092 13.2 0.2 1 2 0.00054 1.4 9.4 0.0 2 105 37 166 36 177 0.57 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP017026_00132 - 599 0.092 13.2 0.2 2 2 0.35 9e+02 0.3 0.0 57 74 417 436 383 457 0.76 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 CP017026_00132 - 599 0.2 11.7 1.5 1 1 0.00027 0.69 10.0 1.4 1 29 35 63 35 535 0.93 CobQ/CobB/MinD/ParA nucleotide binding domain HicA_toxin PF07927.12 58 CP017026_00133 - 67 6.1e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 CP017026_00134 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system TRADD_N PF09034.10 112 CP017026_00135 - 217 0.033 14.2 0.0 1 1 6.1e-06 0.055 13.5 0.0 21 91 58 127 49 135 0.86 TRADD, N-terminal domain Peptidase_M4_C PF02868.15 168 CP017026_00135 - 217 0.18 11.7 1.3 1 3 4.2e-05 0.37 10.6 0.1 104 150 13 59 5 63 0.90 Thermolysin metallopeptidase, alpha-helical domain Peptidase_M4_C PF02868.15 168 CP017026_00135 - 217 0.18 11.7 1.3 2 3 0.6 5.3e+03 -2.9 0.0 123 137 88 102 80 114 0.76 Thermolysin metallopeptidase, alpha-helical domain Peptidase_M4_C PF02868.15 168 CP017026_00135 - 217 0.18 11.7 1.3 3 3 0.33 2.9e+03 -2.0 0.1 103 126 107 130 92 145 0.64 Thermolysin metallopeptidase, alpha-helical domain AAA_31 PF13614.6 177 CP017026_00136 - 186 6.3e-05 23.0 0.6 1 2 2.1e-07 0.0013 18.7 0.1 3 26 2 25 1 37 0.90 AAA domain AAA_31 PF13614.6 177 CP017026_00136 - 186 6.3e-05 23.0 0.6 2 2 0.015 90 2.9 0.0 116 157 52 93 23 106 0.69 AAA domain CbiA PF01656.23 128 CP017026_00136 - 186 0.0021 18.1 0.8 1 1 2.8e-06 0.017 15.2 0.8 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP017026_00136 - 186 0.02 14.4 0.0 1 1 4.5e-06 0.027 13.9 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase RHH_7 PF16777.5 74 CP017026_00137 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG NYN PF01936.18 147 CP017026_00139 - 180 1.1e-09 39.0 0.0 1 1 2e-13 1.2e-09 38.8 0.0 60 123 74 146 15 161 0.80 NYN domain Peroxin-22 PF12827.7 113 CP017026_00139 - 180 0.004 17.0 0.6 1 1 1.3e-06 0.0079 16.1 0.6 25 105 81 162 46 169 0.76 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 CP017026_00139 - 180 0.029 15.0 0.0 1 1 8.3e-06 0.049 14.2 0.0 61 103 100 142 77 142 0.87 PIN domain DUF2400 PF09674.10 227 CP017026_00140 - 217 0.26 11.2 4.0 1 2 0.0095 1.7e+02 2.0 0.1 38 75 49 86 42 96 0.78 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 CP017026_00140 - 217 0.26 11.2 4.0 2 2 3.1e-05 0.56 10.2 0.8 25 110 96 181 92 209 0.74 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 CP017026_00141 - 406 3.2e-08 33.8 0.0 1 1 1.7e-11 6.2e-08 32.9 0.0 3 93 270 374 268 376 0.87 Toprim domain Toprim_4 PF13662.6 89 CP017026_00141 - 406 0.12 12.9 0.1 1 1 7.1e-05 0.25 11.8 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 CP017026_00141 - 406 0.12 13.0 3.6 1 2 0.037 1.3e+02 3.2 0.4 52 85 140 172 121 201 0.70 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP017026_00141 - 406 0.12 13.0 3.6 2 2 0.00034 1.2 9.8 0.2 15 80 321 382 319 402 0.70 5'-3' exonuclease, C-terminal SAM fold Paz_1 PF18349.1 93 CP017026_00141 - 406 0.12 12.3 0.9 1 2 9.2e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Paz_1 PF18349.1 93 CP017026_00141 - 406 0.12 12.3 0.9 2 2 2.7 9.6e+03 -3.4 0.0 36 42 237 243 223 260 0.57 PAZ domain TSC21 PF15217.6 180 CP017026_00141 - 406 0.17 11.8 0.2 1 1 8.2e-05 0.29 11.0 0.2 38 86 145 193 129 208 0.83 TSC21 family CitMHS PF03600.16 300 CP017026_00147 - 208 0.014 14.6 0.6 1 1 4.4e-06 0.016 14.4 0.6 147 214 4 101 1 114 0.80 Citrate transporter Yip1 PF04893.17 172 CP017026_00147 - 208 0.27 10.9 6.3 1 1 0.00011 0.4 10.4 6.3 65 120 7 68 2 75 0.84 Yip1 domain Spo7 PF03907.13 221 CP017026_00147 - 208 0.46 9.9 7.7 1 1 0.00021 0.75 9.2 7.7 33 93 16 71 12 178 0.72 Spo7-like protein DUF3810 PF12725.7 310 CP017026_00147 - 208 0.68 9.2 12.4 1 1 0.00023 0.82 8.9 12.4 19 86 8 75 1 177 0.60 Protein of unknown function (DUF3810) DHHC PF01529.20 134 CP017026_00147 - 208 8.2 6.5 12.2 1 1 0.0043 15 5.7 12.2 47 112 7 69 3 96 0.69 DHHC palmitoyltransferase CitMHS PF03600.16 300 CP017026_00149 - 208 0.014 14.6 0.6 1 1 4.4e-06 0.016 14.4 0.6 147 214 4 101 1 114 0.80 Citrate transporter Yip1 PF04893.17 172 CP017026_00149 - 208 0.27 10.9 6.3 1 1 0.00011 0.4 10.4 6.3 65 120 7 68 2 75 0.84 Yip1 domain Spo7 PF03907.13 221 CP017026_00149 - 208 0.46 9.9 7.7 1 1 0.00021 0.75 9.2 7.7 33 93 16 71 12 178 0.72 Spo7-like protein DUF3810 PF12725.7 310 CP017026_00149 - 208 0.68 9.2 12.4 1 1 0.00023 0.82 8.9 12.4 19 86 8 75 1 177 0.60 Protein of unknown function (DUF3810) DHHC PF01529.20 134 CP017026_00149 - 208 8.2 6.5 12.2 1 1 0.0043 15 5.7 12.2 47 112 7 69 3 96 0.69 DHHC palmitoyltransferase DUF3344 PF11824.8 279 CP017026_00151 - 227 0.087 12.4 0.5 1 1 7.3e-06 0.13 11.8 0.5 117 171 136 194 128 218 0.86 Protein of unknown function (DUF3344) DUF5013 PF16405.5 148 CP017026_00153 - 506 0.0095 16.2 0.0 1 2 8.9e-06 0.08 13.2 0.0 70 105 222 258 198 277 0.87 Domain of unknown function (DUF5013) DUF5013 PF16405.5 148 CP017026_00153 - 506 0.0095 16.2 0.0 2 2 0.18 1.6e+03 -0.7 0.0 18 42 408 435 395 473 0.74 Domain of unknown function (DUF5013) AMPK1_CBM PF16561.5 85 CP017026_00153 - 506 0.088 13.0 0.0 1 1 4.5e-05 0.41 10.9 0.0 21 56 201 237 199 248 0.81 Glycogen recognition site of AMP-activated protein kinase Ribophorin_II PF05817.14 631 CP017026_00154 - 165 1.4 7.4 7.7 1 1 0.00011 2 6.9 7.7 544 593 18 70 16 77 0.85 Oligosaccharyltransferase subunit Ribophorin II SseC PF04888.12 317 CP017026_00157 - 1311 0.004 16.8 0.2 1 1 3e-06 0.014 15.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family ThrE PF06738.12 241 CP017026_00157 - 1311 0.014 14.8 0.8 1 1 7.9e-06 0.036 13.4 0.8 90 179 209 300 201 311 0.78 Putative threonine/serine exporter Hormone_2 PF00123.20 28 CP017026_00157 - 1311 0.036 14.0 0.1 1 1 3.5e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone APOBEC_C PF05240.14 78 CP017026_00157 - 1311 0.062 13.3 0.4 1 1 6.9e-05 0.31 11.0 0.4 26 76 766 819 755 821 0.85 APOBEC-like C-terminal domain Ank_3 PF13606.6 31 CP017026_00159 - 312 3.6e-09 36.1 0.2 1 4 0.015 55 4.8 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 CP017026_00159 - 312 3.6e-09 36.1 0.2 2 4 0.026 92 4.1 0.0 10 29 142 160 134 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 CP017026_00159 - 312 3.6e-09 36.1 0.2 3 4 3.6e-06 0.013 16.0 0.0 2 30 168 195 167 196 0.94 Ankyrin repeat Ank_3 PF13606.6 31 CP017026_00159 - 312 3.6e-09 36.1 0.2 4 4 0.01 37 5.3 0.0 4 30 208 234 205 235 0.86 Ankyrin repeat Ank_2 PF12796.7 83 CP017026_00159 - 312 4.6e-08 33.5 0.0 1 2 0.54 1.9e+03 -0.5 0.0 4 18 74 92 70 122 0.55 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 CP017026_00159 - 312 4.6e-08 33.5 0.0 2 2 8.4e-11 3e-07 30.9 0.0 5 80 142 234 138 237 0.78 Ankyrin repeats (3 copies) Ank PF00023.30 32 CP017026_00159 - 312 0.00033 21.0 0.0 1 3 0.016 57 4.4 0.0 10 26 142 159 130 165 0.79 Ankyrin repeat Ank PF00023.30 32 CP017026_00159 - 312 0.00033 21.0 0.0 2 3 0.0043 15 6.2 0.0 3 31 169 198 168 199 0.85 Ankyrin repeat Ank PF00023.30 32 CP017026_00159 - 312 0.00033 21.0 0.0 3 3 0.0054 19 5.9 0.0 15 28 220 234 206 237 0.70 Ankyrin repeat Ank_5 PF13857.6 56 CP017026_00159 - 312 0.0019 18.5 0.3 1 4 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP017026_00159 - 312 0.0019 18.5 0.3 2 4 0.00043 1.5 9.2 0.0 23 54 141 173 139 174 0.92 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP017026_00159 - 312 0.0019 18.5 0.3 3 4 8.5e-06 0.03 14.6 0.0 1 48 153 200 153 202 0.93 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP017026_00159 - 312 0.0019 18.5 0.3 4 4 2.5 9.1e+03 -2.8 0.0 34 53 225 242 221 243 0.56 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP017026_00159 - 312 0.0027 18.3 0.1 1 3 0.83 3e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP017026_00159 - 312 0.0027 18.3 0.1 2 3 4.6e-05 0.17 12.5 0.0 13 55 146 188 133 188 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP017026_00159 - 312 0.0027 18.3 0.1 3 3 0.11 3.9e+02 1.8 0.0 4 28 209 234 207 243 0.79 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 CP017026_00160 - 567 1.6e-07 31.5 0.0 1 2 3 1.8e+04 -5.2 5.9 25 58 343 376 306 392 0.55 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 CP017026_00160 - 567 1.6e-07 31.5 0.0 2 2 2.7e-11 1.6e-07 31.5 0.0 13 84 416 489 397 491 0.81 Restriction endonuclease fold toxin 7 DUF2239 PF09998.9 184 CP017026_00160 - 567 8.1 6.2 10.9 1 2 0.00026 1.6 8.5 0.6 23 71 46 92 38 103 0.74 Uncharacterized protein conserved in bacteria (DUF2239) DUF2239 PF09998.9 184 CP017026_00160 - 567 8.1 6.2 10.9 2 2 0.066 3.9e+02 0.7 4.1 4 67 259 324 257 429 0.82 Uncharacterized protein conserved in bacteria (DUF2239) DUF4637 PF15470.6 166 CP017026_00160 - 567 9.9 5.9 8.5 1 2 0.35 2.1e+03 -1.7 1.7 34 49 78 93 49 130 0.55 Domain of unknown function (DUF4637) DUF4637 PF15470.6 166 CP017026_00160 - 567 9.9 5.9 8.5 2 2 8.1e-05 0.49 10.1 0.7 17 88 357 428 342 436 0.77 Domain of unknown function (DUF4637) Ank_3 PF13606.6 31 CP017026_00161 - 312 3.6e-09 36.1 0.2 1 4 0.015 55 4.8 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 CP017026_00161 - 312 3.6e-09 36.1 0.2 2 4 0.026 92 4.1 0.0 10 29 142 160 134 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 CP017026_00161 - 312 3.6e-09 36.1 0.2 3 4 3.6e-06 0.013 16.0 0.0 2 30 168 195 167 196 0.94 Ankyrin repeat Ank_3 PF13606.6 31 CP017026_00161 - 312 3.6e-09 36.1 0.2 4 4 0.01 37 5.3 0.0 4 30 208 234 205 235 0.86 Ankyrin repeat Ank_2 PF12796.7 83 CP017026_00161 - 312 4.6e-08 33.5 0.0 1 2 0.54 1.9e+03 -0.5 0.0 4 18 74 92 70 122 0.55 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 CP017026_00161 - 312 4.6e-08 33.5 0.0 2 2 8.4e-11 3e-07 30.9 0.0 5 80 142 234 138 237 0.78 Ankyrin repeats (3 copies) Ank PF00023.30 32 CP017026_00161 - 312 0.00033 21.0 0.0 1 3 0.016 57 4.4 0.0 10 26 142 159 130 165 0.79 Ankyrin repeat Ank PF00023.30 32 CP017026_00161 - 312 0.00033 21.0 0.0 2 3 0.0043 15 6.2 0.0 3 31 169 198 168 199 0.85 Ankyrin repeat Ank PF00023.30 32 CP017026_00161 - 312 0.00033 21.0 0.0 3 3 0.0054 19 5.9 0.0 15 28 220 234 206 237 0.70 Ankyrin repeat Ank_5 PF13857.6 56 CP017026_00161 - 312 0.0019 18.5 0.3 1 4 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP017026_00161 - 312 0.0019 18.5 0.3 2 4 0.00043 1.5 9.2 0.0 23 54 141 173 139 174 0.92 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP017026_00161 - 312 0.0019 18.5 0.3 3 4 8.5e-06 0.03 14.6 0.0 1 48 153 200 153 202 0.93 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP017026_00161 - 312 0.0019 18.5 0.3 4 4 2.5 9.1e+03 -2.8 0.0 34 53 225 242 221 243 0.56 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP017026_00161 - 312 0.0027 18.3 0.1 1 3 0.83 3e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP017026_00161 - 312 0.0027 18.3 0.1 2 3 4.6e-05 0.17 12.5 0.0 13 55 146 188 133 188 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP017026_00161 - 312 0.0027 18.3 0.1 3 3 0.11 3.9e+02 1.8 0.0 4 28 209 234 207 243 0.79 Ankyrin repeats (many copies) Ntox24 PF15529.6 97 CP017026_00164 - 318 0.0021 18.3 0.8 1 2 0.39 7e+03 -2.6 0.0 26 45 180 201 159 205 0.54 Bacterial toxin 24 Ntox24 PF15529.6 97 CP017026_00164 - 318 0.0021 18.3 0.8 2 2 2.2e-07 0.0039 17.5 0.1 5 93 228 301 210 305 0.79 Bacterial toxin 24 CobN-Mg_chel PF02514.16 1089 CP017026_00165 - 128 0.16 9.7 0.0 1 1 1e-05 0.19 9.5 0.0 299 369 36 100 24 109 0.71 CobN/Magnesium Chelatase LPD7 PF18821.1 94 CP017026_00166 - 184 0.0092 16.1 0.4 1 2 0.0018 11 6.2 0.1 19 80 45 110 19 121 0.60 Large polyvalent protein-associated domain 7 LPD7 PF18821.1 94 CP017026_00166 - 184 0.0092 16.1 0.4 2 2 0.00051 3 8.0 0.1 35 65 124 157 114 161 0.78 Large polyvalent protein-associated domain 7 Imm59 PF15597.6 100 CP017026_00166 - 184 0.13 12.8 10.6 1 3 2.1e-05 0.13 12.8 3.6 28 74 25 73 20 95 0.85 Immunity protein 59 Imm59 PF15597.6 100 CP017026_00166 - 184 0.13 12.8 10.6 2 3 0.039 2.3e+02 2.3 2.1 10 47 68 108 63 142 0.61 Immunity protein 59 Imm59 PF15597.6 100 CP017026_00166 - 184 0.13 12.8 10.6 3 3 0.039 2.3e+02 2.3 1.0 39 62 124 149 88 183 0.63 Immunity protein 59 ABC2_membrane_3 PF12698.7 345 CP017026_00166 - 184 0.29 10.2 0.8 1 1 5.3e-05 0.32 10.1 0.8 47 122 43 118 23 175 0.68 ABC-2 family transporter protein AHH PF14412.6 114 CP017026_00167 - 258 6.2e-16 58.5 1.7 1 1 6.7e-20 1.2e-15 57.6 1.7 9 111 154 239 149 243 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH DUF4299 PF14132.6 301 CP017026_00169 - 116 3.2e-08 33.4 0.1 1 1 6.2e-12 3.7e-08 33.2 0.1 189 300 12 110 5 111 0.85 Domain of unknown function (DUF4299) A2M PF00207.22 92 CP017026_00169 - 116 0.11 12.3 0.0 1 1 2.6e-05 0.16 11.9 0.0 17 56 49 89 36 94 0.81 Alpha-2-macroglobulin family XPG_I PF00867.18 94 CP017026_00169 - 116 0.13 12.7 0.0 1 1 2.6e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region Phage_GPD PF05954.11 304 CP017026_00171 - 838 5.5e-18 65.3 0.0 1 1 9.6e-22 8.6e-18 64.6 0.0 21 281 72 360 45 376 0.76 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 CP017026_00171 - 838 0.11 12.1 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 CP017026_00171 - 838 0.11 12.1 0.0 2 2 0.00042 3.8 7.2 0.0 19 49 461 491 452 518 0.81 TCL1/MTCP1 family DivIC PF04977.15 80 CP017026_00173 - 635 0.0014 18.3 0.2 1 5 8e-08 0.0014 18.3 0.2 23 78 35 90 31 92 0.94 Septum formation initiator DivIC PF04977.15 80 CP017026_00173 - 635 0.0014 18.3 0.2 2 5 0.19 3.3e+03 -2.1 3.7 24 50 259 285 248 295 0.58 Septum formation initiator DivIC PF04977.15 80 CP017026_00173 - 635 0.0014 18.3 0.2 3 5 0.48 8.6e+03 -3.4 0.3 40 57 376 392 375 393 0.79 Septum formation initiator DivIC PF04977.15 80 CP017026_00173 - 635 0.0014 18.3 0.2 4 5 0.4 7.1e+03 -3.1 2.3 21 41 439 459 431 484 0.61 Septum formation initiator DivIC PF04977.15 80 CP017026_00173 - 635 0.0014 18.3 0.2 5 5 0.17 3.1e+03 -2.0 0.1 16 35 614 633 609 635 0.77 Septum formation initiator DZR PF12773.7 49 CP017026_00174 - 114 0.039 14.0 0.3 1 1 9.1e-06 0.054 13.5 0.3 13 37 5 38 2 43 0.91 Double zinc ribbon DiS_P_DiS PF06750.13 84 CP017026_00174 - 114 0.04 14.1 0.4 1 1 1.3e-05 0.077 13.1 0.4 29 72 6 49 2 59 0.83 Bacterial Peptidase A24 N-terminal domain zinc_ribbon_4 PF13717.6 36 CP017026_00174 - 114 0.6 10.1 4.6 1 2 0.054 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP017026_00174 - 114 0.6 10.1 4.6 2 2 0.00011 0.64 10.0 0.4 3 14 30 41 29 45 0.88 zinc-ribbon domain Rapsyn_N PF10579.9 80 CP017026_00175 - 358 0.12 12.5 1.2 1 2 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 CP017026_00175 - 358 0.12 12.5 1.2 2 2 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region SprT-like PF10263.9 113 CP017026_00177 - 424 0.056 13.3 0.1 1 1 1.5e-05 0.13 12.1 0.1 58 93 316 353 294 360 0.81 SprT-like family Peptidase_M78 PF06114.13 123 CP017026_00177 - 424 0.077 12.9 0.1 1 1 2e-05 0.18 11.8 0.1 6 63 288 347 285 365 0.76 IrrE N-terminal-like domain Phage_integrase PF00589.22 172 CP017026_00180 - 312 5.1e-24 85.0 0.5 1 1 2.8e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 CP017026_00180 - 312 2.3e-05 24.6 3.9 1 3 1.4e-07 0.00043 20.5 1.9 1 79 16 99 16 99 0.88 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 CP017026_00180 - 312 2.3e-05 24.6 3.9 2 3 0.0015 4.4 7.7 0.0 13 35 80 102 76 109 0.89 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 CP017026_00180 - 312 2.3e-05 24.6 3.9 3 3 3.1 9.3e+03 -3.0 0.0 36 54 123 141 114 151 0.54 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP017026_00180 - 312 0.00011 22.4 4.6 1 3 3.8e-08 0.00011 22.4 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP017026_00180 - 312 0.00011 22.4 4.6 2 3 0.91 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP017026_00180 - 312 0.00011 22.4 4.6 3 3 1.8 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phyto-Amp PF15438.6 195 CP017026_00180 - 312 0.0094 15.8 0.3 1 1 5.8e-06 0.017 14.9 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma YbjN PF10722.9 127 CP017026_00180 - 312 0.011 15.8 0.3 1 2 0.00017 0.51 10.4 0.1 38 77 96 135 93 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 CP017026_00180 - 312 0.011 15.8 0.3 2 2 0.04 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator Phage_int_SAM_3 PF14659.6 58 CP017026_00180 - 312 0.028 14.7 3.2 1 1 3.6e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain FlaC_arch PF05377.11 55 CP017026_00181 - 76 0.0083 16.5 2.3 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 CP017026_00181 - 76 0.0083 16.5 2.3 2 2 4.6e-07 0.0083 16.5 2.3 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) WGR PF05406.15 80 CP017026_00182 - 75 2.4e-07 30.7 0.6 1 1 3.1e-11 2.7e-07 30.5 0.6 3 73 4 74 2 75 0.87 WGR domain Cadherin_pro PF08758.11 90 CP017026_00182 - 75 0.017 15.3 0.0 1 1 2.3e-06 0.021 15.0 0.0 15 45 26 56 12 62 0.81 Cadherin prodomain like YafQ_toxin PF15738.5 88 CP017026_00186 - 106 1.6e-26 92.4 3.7 1 1 4.7e-30 2.1e-26 92.0 3.7 1 87 20 106 20 106 0.95 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 CP017026_00186 - 106 1.9e-06 28.4 0.6 1 1 4.9e-10 2.2e-06 28.2 0.6 6 89 23 105 18 106 0.80 ParE toxin of type II toxin-antitoxin system, parDE Ribosomal_S2 PF00318.20 215 CP017026_00186 - 106 0.0042 16.3 0.9 1 1 1.2e-06 0.0053 16.0 0.9 98 164 27 94 21 99 0.83 Ribosomal protein S2 ParE-like_toxin PF15781.5 87 CP017026_00186 - 106 0.017 15.1 1.6 1 1 7.8e-06 0.035 14.1 1.6 5 82 26 105 22 106 0.79 ParE-like toxin of type II bacterial toxin-antitoxin system CCDC-167 PF15188.6 84 CP017026_00191 - 137 0.002 18.4 0.4 1 1 1.1e-06 0.0033 17.7 0.4 37 79 77 119 21 121 0.77 Coiled-coil domain-containing protein 167 DUF3461 PF11944.8 125 CP017026_00191 - 137 0.015 15.4 3.5 1 1 1.3e-05 0.04 14.0 3.5 23 124 7 100 2 101 0.83 Protein of unknown function (DUF3461) HSBP1 PF06825.12 51 CP017026_00191 - 137 0.033 14.0 0.1 1 2 0.027 80 3.2 0.0 28 43 61 76 46 78 0.86 Heat shock factor binding protein 1 HSBP1 PF06825.12 51 CP017026_00191 - 137 0.033 14.0 0.1 2 2 0.00073 2.2 8.2 0.0 17 42 79 104 77 109 0.83 Heat shock factor binding protein 1 Streptin-Immun PF11083.8 93 CP017026_00191 - 137 0.052 14.0 0.6 1 2 0.35 1.1e+03 0.2 0.1 63 82 40 59 20 68 0.62 Lantibiotic streptin immunity protein Streptin-Immun PF11083.8 93 CP017026_00191 - 137 0.052 14.0 0.6 2 2 6.7e-05 0.2 12.1 0.1 42 81 68 107 63 115 0.87 Lantibiotic streptin immunity protein DUF4164 PF13747.6 89 CP017026_00191 - 137 0.1 12.9 0.4 1 1 0.00011 0.32 11.3 0.2 14 42 77 106 62 109 0.77 Domain of unknown function (DUF4164) Trimer_CC PF08954.11 52 CP017026_00191 - 137 0.14 11.7 0.1 1 2 0.0033 9.8 5.8 0.0 41 52 79 90 52 90 0.70 Trimerisation motif Trimer_CC PF08954.11 52 CP017026_00191 - 137 0.14 11.7 0.1 2 2 0.19 5.8e+02 0.2 0.0 41 49 90 98 89 100 0.83 Trimerisation motif Sigma_reg_N PF13800.6 90 CP017026_00192 - 37 0.13 12.6 0.3 1 1 7.1e-06 0.13 12.6 0.3 15 44 5 34 4 37 0.89 Sigma factor regulator N-terminal DUF5601 PF18151.1 65 CP017026_00193 - 118 0.038 14.3 0.2 1 1 7e-06 0.063 13.6 0.2 14 55 5 47 1 48 0.88 Domain of unknown function (DUF5601) DUF1640 PF07798.11 175 CP017026_00193 - 118 0.58 10.2 7.1 1 2 1.4e-05 0.12 12.4 2.4 52 100 26 77 9 86 0.83 Protein of unknown function (DUF1640) DUF1640 PF07798.11 175 CP017026_00193 - 118 0.58 10.2 7.1 2 2 0.068 6.1e+02 0.3 0.3 148 169 82 103 74 110 0.65 Protein of unknown function (DUF1640) HTH_3 PF01381.22 55 CP017026_00195 - 44 8.4e-07 29.0 0.0 1 1 1e-09 9.1e-07 28.9 0.0 1 33 9 41 9 44 0.95 Helix-turn-helix HTH_26 PF13443.6 63 CP017026_00195 - 44 0.00022 21.6 0.0 1 1 2.7e-07 0.00024 21.4 0.0 2 34 9 41 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 CP017026_00195 - 44 0.0007 19.1 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding HTH_19 PF12844.7 65 CP017026_00195 - 44 0.0012 18.8 0.0 1 1 1.4e-06 0.0013 18.8 0.0 4 37 9 42 7 44 0.91 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 CP017026_00195 - 44 0.002 18.0 0.1 1 1 2.6e-06 0.0023 17.7 0.1 1 32 9 41 9 43 0.84 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 CP017026_00195 - 44 0.002 17.9 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 CP017026_00195 - 44 0.0035 17.4 0.3 1 1 5.7e-06 0.0052 16.8 0.3 25 46 1 22 1 41 0.89 ENT domain HTH_31 PF13560.6 64 CP017026_00195 - 44 0.0089 16.4 0.0 1 1 1.2e-05 0.011 16.1 0.0 12 38 15 41 9 43 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 CP017026_00195 - 44 0.009 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 CP017026_00195 - 44 0.0098 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 CP017026_00195 - 44 0.013 14.9 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 CP017026_00195 - 44 0.019 14.9 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 CP017026_00195 - 44 0.02 14.7 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain HTH_AsnC-type PF13404.6 42 CP017026_00195 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain Phage_CI_repr PF07022.13 65 CP017026_00195 - 44 0.03 14.4 0.0 1 1 3.7e-05 0.033 14.3 0.0 3 33 9 38 7 41 0.84 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4 PF04545.16 50 CP017026_00195 - 44 0.034 13.7 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 HTH_17 PF12728.7 51 CP017026_00195 - 44 0.081 13.1 0.1 1 2 0.018 16 5.8 0.0 4 16 9 21 9 26 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 CP017026_00195 - 44 0.081 13.1 0.1 2 2 0.0085 7.6 6.8 0.0 6 26 22 42 19 44 0.78 Helix-turn-helix domain MerR PF00376.23 38 CP017026_00195 - 44 0.085 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 CP017026_00195 - 44 0.085 12.7 0.0 2 2 0.01 9.3 6.1 0.0 4 17 22 35 21 41 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 CP017026_00195 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 CP017026_00195 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain LysE PF01810.18 193 CP017230_00001 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 CP017230_00001 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP017230_00001 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 CP017230_00001 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 CP017230_00001 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 CP017230_00001 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 CP017230_00001 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 CP017230_00001 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 CP017230_00001 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP017230_00001 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP017230_00001 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 CP017230_00001 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 CP017230_00002 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP017230_00002 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP017230_00002 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP017230_00002 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP017230_00002 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP017230_00002 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 CP017230_00003 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP017230_00003 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 CP017230_00004 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP017230_00004 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP017230_00004 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP017230_00004 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP017230_00004 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP017230_00004 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 CP017230_00005 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 CP017230_00006 - 1932 3.5e-16 58.9 1.1 1 3 2.1e-19 7.4e-16 57.8 0.1 57 245 1018 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP017230_00006 - 1932 3.5e-16 58.9 1.1 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP017230_00006 - 1932 3.5e-16 58.9 1.1 3 3 1.1 3.9e+03 -3.8 0.0 172 198 1879 1906 1860 1920 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 CP017230_00006 - 1932 4e-08 33.4 8.0 1 2 1.1e-11 4e-08 33.4 8.0 2 148 1000 1212 999 1243 0.71 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP017230_00006 - 1932 4e-08 33.4 8.0 2 2 0.31 1.1e+03 -0.5 5.3 36 121 1801 1904 1750 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP017230_00006 - 1932 1.2e-06 28.8 0.2 1 2 0.24 8.7e+02 0.3 0.0 45 73 1077 1105 1030 1108 0.80 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP017230_00006 - 1932 1.2e-06 28.8 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP017230_00006 - 1932 5.8e-06 26.2 1.2 1 2 3.6e-07 0.0013 18.5 0.2 2 108 1004 1109 1003 1205 0.58 DEAD/DEAH box helicase DEAD PF00270.29 176 CP017230_00006 - 1932 5.8e-06 26.2 1.2 2 2 0.11 3.9e+02 0.7 0.0 119 150 1883 1916 1827 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP017230_00006 - 1932 3.7e-05 24.2 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP017230_00006 - 1932 3.7e-05 24.2 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 664 701 655 716 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 CP017230_00007 - 234 0.0008 19.8 0.1 1 1 4.4e-07 0.002 18.5 0.1 29 75 79 143 7 144 0.70 Acetyltransferase (GNAT) domain DUF2768 PF10966.8 58 CP017230_00007 - 234 0.011 16.1 0.9 1 1 5.7e-06 0.026 15.0 0.9 23 52 203 232 201 233 0.94 Protein of unknown function (DUF2768) Acetyltransf_1 PF00583.25 117 CP017230_00007 - 234 0.021 15.1 0.1 1 1 1.1e-05 0.051 13.8 0.1 59 92 66 109 30 142 0.69 Acetyltransferase (GNAT) family GramPos_pilinBB PF16569.5 115 CP017230_00007 - 234 0.22 12.3 4.3 1 2 3.8e-05 0.17 12.7 1.7 56 111 16 72 2 76 0.74 Gram-positive pilin backbone subunit 2, Cna-B-like domain GramPos_pilinBB PF16569.5 115 CP017230_00007 - 234 0.22 12.3 4.3 2 2 0.4 1.8e+03 -0.3 0.0 20 62 128 174 112 198 0.60 Gram-positive pilin backbone subunit 2, Cna-B-like domain CooC_C PF15976.5 93 CP017230_00009 - 444 0.12 12.4 0.4 1 2 6.9e-05 0.62 10.2 0.2 22 76 47 101 38 112 0.84 CS1-pili formation C-terminal CooC_C PF15976.5 93 CP017230_00009 - 444 0.12 12.4 0.4 2 2 0.22 2e+03 -1.1 0.0 11 34 419 442 416 444 0.81 CS1-pili formation C-terminal EVI2A PF05399.11 232 CP017230_00009 - 444 2.8 7.5 10.5 1 1 0.00068 6.1 6.4 10.5 19 108 14 101 10 112 0.83 Ectropic viral integration site 2A protein (EVI2A) Peptidase_C39 PF03412.15 133 CP017230_00011 - 197 9e-18 64.4 0.0 1 1 1.9e-21 1.2e-17 64.0 0.0 2 124 33 162 32 176 0.81 Peptidase C39 family Peptidase_C70 PF12385.8 145 CP017230_00011 - 197 0.00011 22.2 0.0 1 1 2.6e-08 0.00016 21.7 0.0 11 131 37 147 20 158 0.78 Papain-like cysteine protease AvrRpt2 Peptidase_C39_2 PF13529.6 144 CP017230_00011 - 197 0.086 13.4 0.0 1 1 2.9e-05 0.18 12.4 0.0 6 143 36 143 31 144 0.67 Peptidase_C39 like family Relaxase PF03432.14 242 CP017230_00013 - 462 1.6e-10 41.1 7.7 1 2 8.7e-15 1.6e-10 41.1 7.7 48 229 119 297 70 310 0.74 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP017230_00013 - 462 1.6e-10 41.1 7.7 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 CP017230_00014 - 183 4.6e-05 23.3 7.5 1 3 3.3e-05 0.15 12.1 0.3 24 45 17 38 10 44 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP017230_00014 - 183 4.6e-05 23.3 7.5 2 3 0.38 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP017230_00014 - 183 4.6e-05 23.3 7.5 3 3 1e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP017230_00014 - 183 0.032 14.4 2.3 1 1 9.1e-06 0.041 14.0 1.6 54 131 18 103 9 124 0.73 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP017230_00014 - 183 0.1 12.7 5.3 1 2 0.0054 24 5.1 0.7 10 46 55 91 53 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP017230_00014 - 183 0.1 12.7 5.3 2 2 0.00034 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 CP017230_00014 - 183 0.48 10.7 7.2 1 2 0.022 1e+02 3.2 0.6 2 23 9 30 8 69 0.71 DNA sulphur modification protein DndE DndE PF08870.11 112 CP017230_00014 - 183 0.48 10.7 7.2 2 2 0.00012 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 CP017230_00015 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 CP017230_00015 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP017230_00015 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 CP017230_00015 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 CP017230_00015 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 CP017230_00018 - 409 2.3e-08 34.3 0.2 1 2 1 6.1e+03 -2.3 0.0 55 74 161 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 CP017230_00018 - 409 2.3e-08 34.3 0.2 2 2 1.1e-11 6.4e-08 32.9 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 CP017230_00018 - 409 0.024 14.9 0.1 1 2 0.028 1.6e+02 2.6 0.3 41 60 149 169 121 180 0.81 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 CP017230_00018 - 409 0.024 14.9 0.1 2 2 0.00021 1.2 9.4 0.0 15 83 283 359 277 378 0.81 Retrotransposon gag protein 5_3_exonuc PF01367.20 97 CP017230_00018 - 409 0.36 11.5 2.6 1 2 0.48 2.9e+03 -1.1 0.1 28 42 166 180 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP017230_00018 - 409 0.36 11.5 2.6 2 2 7.8e-05 0.47 11.1 0.4 15 81 322 384 321 405 0.71 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 CP017230_00019 - 92 0.0072 16.3 0.0 1 1 1.5e-06 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) STI1 PF17830.1 55 CP017230_00019 - 92 0.15 12.0 0.0 1 1 4e-05 0.36 10.8 0.0 9 39 22 56 16 59 0.84 STI1 domain DUF1451 PF07295.11 147 CP017230_00020 - 67 0.00056 20.0 0.0 1 1 3.5e-08 0.00063 19.8 0.0 107 137 9 39 2 44 0.88 Zinc-ribbon containing domain DUF4145 PF13643.6 88 CP017230_00021 - 207 2.5e-16 59.6 5.0 1 3 0.88 1.6e+04 -3.9 0.0 35 43 76 84 67 86 0.66 Domain of unknown function (DUF4145) DUF4145 PF13643.6 88 CP017230_00021 - 207 2.5e-16 59.6 5.0 2 3 8.1e-20 1.4e-15 57.1 0.1 1 76 87 161 87 172 0.91 Domain of unknown function (DUF4145) DUF4145 PF13643.6 88 CP017230_00021 - 207 2.5e-16 59.6 5.0 3 3 0.0019 34 4.7 0.6 21 52 177 203 161 207 0.77 Domain of unknown function (DUF4145) Glyco_hydro_16 PF00722.21 177 CP017230_00024 - 46 0.081 12.4 0.4 1 1 4.5e-06 0.081 12.4 0.4 108 130 11 33 2 41 0.83 Glycosyl hydrolases family 16 HicB_lk_antitox PF15919.5 123 CP017230_00025 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 CP017230_00026 - 67 6.2e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 CP017230_00027 - 597 1.8e-15 57.0 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 CP017230_00027 - 597 0.00087 18.7 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP017230_00027 - 597 0.00087 18.7 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP017230_00027 - 597 0.0012 18.6 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP017230_00027 - 597 0.0012 18.6 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 CP017230_00027 - 597 0.0035 17.1 0.0 1 1 2.5e-06 0.0073 16.0 0.0 5 122 36 172 32 207 0.72 AAA domain ATPase PF06745.13 231 CP017230_00027 - 597 0.011 15.1 0.1 1 2 2.1e-05 0.064 12.6 0.0 16 70 30 83 26 214 0.87 KaiC ATPase PF06745.13 231 CP017230_00027 - 597 0.011 15.1 0.1 2 2 0.51 1.5e+03 -1.7 0.0 137 160 329 352 321 358 0.83 KaiC CbiA PF01656.23 128 CP017230_00027 - 597 0.18 11.9 0.9 1 1 0.00018 0.53 10.4 1.0 1 29 35 63 35 537 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain GBR_NSP5 PF17580.2 176 CP017230_00028 - 141 0.012 15.5 0.4 1 1 1.1e-06 0.02 14.7 0.4 17 64 34 81 17 89 0.78 Group B Rotavirus Non-structural protein 5 Resolvase PF00239.21 146 CP017230_00030 - 204 1.6e-33 115.9 0.7 1 1 4.7e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP017230_00030 - 204 0.024 14.4 0.8 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP017230_00030 - 204 0.024 14.4 0.8 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 CP017230_00030 - 204 0.024 14.4 0.8 3 3 0.01 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP017230_00030 - 204 0.028 14.5 4.9 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP017230_00030 - 204 0.028 14.5 4.9 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP017230_00030 - 204 0.028 14.5 4.9 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 CP017230_00030 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP017230_00030 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP017230_00030 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 CP017230_00031 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP017230_00031 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 CP017230_00031 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 CP017230_00033 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP017230_00033 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 CP017230_00034 - 922 7.4e-52 176.4 0.8 1 1 4.1e-55 1.9e-51 175.1 0.8 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP017230_00034 - 922 3.6e-21 75.2 0.8 1 1 1.4e-24 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 CP017230_00034 - 922 3.9e-07 29.3 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 CP017230_00034 - 922 0.033 14.3 5.2 1 5 0.52 2.3e+03 -1.6 0.1 96 202 139 253 129 274 0.53 Helicase HerA, central domain DUF87 PF01935.17 227 CP017230_00034 - 922 0.033 14.3 5.2 2 5 0.35 1.6e+03 -1.0 0.1 88 126 264 300 242 418 0.70 Helicase HerA, central domain DUF87 PF01935.17 227 CP017230_00034 - 922 0.033 14.3 5.2 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 CP017230_00034 - 922 0.033 14.3 5.2 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 CP017230_00034 - 922 0.033 14.3 5.2 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain Phage_pRha PF09669.10 88 CP017230_00035 - 185 6.7e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 CP017230_00035 - 185 0.0015 18.6 0.0 1 1 8.6e-07 0.0031 17.6 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 CP017230_00035 - 185 0.026 14.1 0.3 1 2 0.05 1.8e+02 1.6 0.1 80 118 33 71 5 80 0.74 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 CP017230_00035 - 185 0.026 14.1 0.3 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 CP017230_00035 - 185 0.081 12.9 0.1 1 1 6.1e-05 0.22 11.5 0.0 77 131 80 130 69 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 CP017230_00035 - 185 0.83 9.7 7.1 1 3 0.019 69 3.6 0.1 40 53 12 25 3 29 0.83 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CP017230_00035 - 185 0.83 9.7 7.1 2 3 0.0022 7.9 6.6 0.9 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CP017230_00035 - 185 0.83 9.7 7.1 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 DUF3895 PF13034.6 76 CP017230_00036 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 CP017230_00036 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) SSB PF00436.25 104 CP017230_00037 - 141 7e-25 87.1 0.1 1 1 4.9e-29 8.8e-25 86.8 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 CP017230_00038 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP017230_00038 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP017230_00038 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP017230_00038 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP017230_00038 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP017230_00038 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP017230_00038 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 CP017230_00039 - 323 4.7e-28 98.9 14.1 1 1 2.7e-31 6.1e-28 98.6 14.1 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 CP017230_00039 - 323 0.0059 16.7 0.7 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP017230_00039 - 323 0.0059 16.7 0.7 2 2 9.1e-06 0.02 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CP017230_00039 - 323 0.011 16.4 5.4 1 3 0.067 1.5e+02 3.0 0.3 92 135 104 145 41 149 0.59 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP017230_00039 - 323 0.011 16.4 5.4 2 3 0.12 2.6e+02 2.2 0.5 52 135 111 145 93 185 0.58 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP017230_00039 - 323 0.011 16.4 5.4 3 3 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 CP017230_00039 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 CP017230_00039 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 CP017230_00039 - 323 0.069 13.8 0.9 1 2 2.2 4.9e+03 -1.8 0.0 55 72 124 141 101 172 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP017230_00039 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain Allexi_40kDa PF05549.11 271 CP017230_00039 - 323 0.81 9.1 5.0 1 2 0.21 4.8e+02 0.1 0.1 37 123 47 138 33 177 0.61 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 CP017230_00039 - 323 0.81 9.1 5.0 2 2 0.0002 0.46 10.0 1.6 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein THOC7 PF05615.13 132 CP017230_00039 - 323 3 8.1 11.6 1 2 0.00072 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 CP017230_00039 - 323 3 8.1 11.6 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 DHR10 PF18595.1 117 CP017230_00039 - 323 5.7 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 CP017230_00039 - 323 5.7 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain TrbL PF04610.14 215 CP017230_00040 - 332 2.8e-30 105.7 31.4 1 2 4.7e-34 2.8e-30 105.7 31.4 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP017230_00040 - 332 2.8e-30 105.7 31.4 2 2 0.24 1.4e+03 -1.2 0.1 61 91 293 329 260 332 0.58 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP017230_00040 - 332 0.16 11.8 1.2 1 2 0.16 9.4e+02 -0.3 0.1 35 67 67 105 60 118 0.65 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP017230_00040 - 332 0.16 11.8 1.2 2 2 0.00011 0.68 9.8 0.1 28 81 238 288 209 301 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 CP017230_00040 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 CP017230_00041 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CP017230_00041 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 CP017230_00042 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CP017230_00042 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 CP017230_00043 - 295 2e-54 184.5 1.5 1 1 3.7e-58 3.3e-54 183.8 1.5 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CP017230_00043 - 295 0.072 12.9 0.5 1 2 1.8e-05 0.16 11.8 0.0 1 51 1 51 1 66 0.92 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CP017230_00043 - 295 0.072 12.9 0.5 2 2 1.1 9.7e+03 -3.7 0.1 50 62 130 142 124 149 0.68 Domain of unknown function (DUF4354) TrbI PF03743.14 187 CP017230_00044 - 391 3.3e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP017230_00044 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 CP017230_00045 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP017230_00045 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP017230_00045 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP017230_00045 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP017230_00045 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CP017230_00045 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CP017230_00045 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CP017230_00045 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP017230_00045 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CP017230_00045 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP017230_00045 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP017230_00045 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CP017230_00045 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CP017230_00045 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CP017230_00045 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP017230_00045 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CP017230_00045 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CP017230_00045 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CP017230_00045 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CP017230_00045 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CP017230_00045 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP017230_00045 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CP017230_00045 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP017230_00045 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP017230_00045 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CP017230_00045 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CP017230_00045 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 CP017230_00045 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP017230_00045 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP017230_00045 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CP017230_00045 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 CP017230_00045 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 CP017230_00046 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP017230_00046 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP017230_00046 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP017230_00046 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CP017230_00046 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 CP017230_00047 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 CP017230_00047 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 CP017230_00047 - 145 0.08 12.7 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CP017230_00047 - 145 3.9 7.4 5.6 1 2 0.00081 3.6 7.5 2.3 36 49 29 42 2 47 0.91 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CP017230_00047 - 145 3.9 7.4 5.6 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 CP017230_00048 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 CP017230_00049 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 CP017230_00049 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 CP017230_00049 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 CP017230_00049 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP017230_00049 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP017230_00049 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 CP017230_00051 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP017230_00051 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 CP017230_00052 - 676 1.4e-97 327.4 8.2 1 1 6.3e-101 1.9e-97 326.9 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP017230_00052 - 676 4.7e-12 46.0 3.1 1 2 1.8e-15 5.4e-12 45.8 0.1 2 101 3 132 2 134 0.90 Toprim domain Toprim PF01751.22 103 CP017230_00052 - 676 4.7e-12 46.0 3.1 2 2 1.3 3.8e+03 -1.8 0.6 77 77 520 520 476 566 0.60 Toprim domain zf-C4_Topoisom PF01396.19 39 CP017230_00052 - 676 0.05 13.4 2.1 1 1 4.7e-05 0.14 12.0 2.1 2 27 628 656 627 664 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP017230_00052 - 676 0.05 13.9 0.7 1 2 2.9 8.5e+03 -2.9 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP017230_00052 - 676 0.05 13.9 0.7 2 2 2.7e-05 0.079 13.2 0.0 18 35 624 641 614 641 0.76 zinc-ribbon EF-hand_8 PF13833.6 55 CP017230_00052 - 676 0.083 12.8 0.0 1 1 9.3e-05 0.28 11.1 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 CP017230_00052 - 676 0.34 11.1 3.3 1 3 0.59 1.8e+03 -0.8 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP017230_00052 - 676 0.34 11.1 3.3 2 3 1.7 5.2e+03 -2.3 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP017230_00052 - 676 0.34 11.1 3.3 3 3 0.00026 0.78 10.0 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain PcfJ PF14284.6 144 CP017230_00053 - 473 4.7e-05 23.3 2.2 1 1 1.3e-08 0.00012 22.0 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP017230_00053 - 473 0.025 14.5 4.1 1 1 2e-05 0.18 11.7 4.1 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 CP017230_00055 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP017230_00055 - 639 3.4e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP017230_00055 - 639 3.4e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP017230_00055 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP017230_00055 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP017230_00055 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP017230_00055 - 639 0.0015 18.9 0.0 1 1 2e-06 0.0036 17.6 0.0 4 58 266 314 264 318 0.81 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP017230_00055 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP017230_00055 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP017230_00055 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 CP017230_00055 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B Rrp15p PF07890.12 134 CP017230_00057 - 65 0.41 11.0 7.3 1 1 0.00014 0.42 10.9 7.3 25 74 14 64 3 65 0.80 Rrp15p Oxysterol_BP PF01237.18 373 CP017230_00057 - 65 0.82 8.4 6.8 1 1 0.00028 0.84 8.4 6.8 311 349 26 63 5 64 0.82 Oxysterol-binding protein Asp4 PF16996.5 55 CP017230_00057 - 65 1.1 9.1 4.3 1 2 0.0003 0.9 9.4 2.6 9 30 18 39 13 44 0.91 Accessory secretory protein Sec Asp4 Asp4 PF16996.5 55 CP017230_00057 - 65 1.1 9.1 4.3 2 2 0.52 1.5e+03 -1.0 0.1 17 25 41 49 37 55 0.66 Accessory secretory protein Sec Asp4 Casc1_N PF15927.5 201 CP017230_00057 - 65 1.8 8.2 14.1 1 1 0.00072 2.1 8.0 14.1 3 35 20 52 18 62 0.83 Cancer susceptibility candidate 1 N-terminus Herpes_UL56 PF04534.12 197 CP017230_00057 - 65 2.6 7.5 9.7 1 1 0.0011 3.2 7.2 9.7 63 103 15 58 8 61 0.72 Herpesvirus UL56 protein Radial_spoke_3 PF06098.11 286 CP017230_00057 - 65 5.5 6.2 13.0 1 1 0.002 6 6.1 13.0 150 204 1 54 1 60 0.81 Radial spoke protein 3 CtsR_C PF17727.1 72 CP017230_00060 - 102 0.019 15.1 0.2 1 2 0.00017 3 8.0 0.0 3 38 31 66 27 73 0.86 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP017230_00060 - 102 0.019 15.1 0.2 2 2 0.0014 24 5.1 0.0 28 49 74 95 71 101 0.84 CtsR C-terminal dimerization domain AAA_31 PF13614.6 177 CP017417_00001 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 CP017417_00001 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 CP017417_00001 - 186 0.0021 18.1 0.9 1 1 2.9e-06 0.017 15.2 0.9 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP017417_00001 - 186 0.014 14.8 0.0 1 1 3.2e-06 0.019 14.4 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase RseC_MucC PF04246.12 130 CP017417_00002 - 93 9.1 6.3 6.3 1 2 0.085 1.5e+03 -1.0 0.1 78 96 5 22 3 31 0.58 Positive regulator of sigma(E), RseC/MucC RseC_MucC PF04246.12 130 CP017417_00002 - 93 9.1 6.3 6.3 2 2 0.00014 2.4 8.1 3.1 62 112 32 81 27 91 0.74 Positive regulator of sigma(E), RseC/MucC NnrS PF05940.12 366 CP017417_00003 - 124 0.023 14.1 9.9 1 1 1.3e-05 0.028 13.8 9.9 75 171 8 110 3 116 0.73 NnrS protein DUF2070 PF09843.9 564 CP017417_00003 - 124 0.054 11.8 13.4 1 1 2.8e-05 0.063 11.6 13.4 80 176 9 115 3 123 0.72 Predicted membrane protein (DUF2070) DUF4199 PF13858.6 168 CP017417_00003 - 124 0.15 12.4 19.9 1 2 0.0025 5.6 7.3 8.2 6 59 11 62 7 66 0.60 Protein of unknown function (DUF4199) DUF4199 PF13858.6 168 CP017417_00003 - 124 0.15 12.4 19.9 2 2 0.00024 0.53 10.7 4.4 9 60 73 120 64 124 0.49 Protein of unknown function (DUF4199) Glucos_trans_II PF14264.6 297 CP017417_00003 - 124 0.51 9.7 27.0 1 2 0.00022 0.49 9.7 7.9 226 278 5 53 2 59 0.81 Glucosyl transferase GtrII Glucos_trans_II PF14264.6 297 CP017417_00003 - 124 0.51 9.7 27.0 2 2 0.007 16 4.8 11.0 138 187 67 113 58 123 0.55 Glucosyl transferase GtrII DUF5385 PF17359.2 220 CP017417_00003 - 124 0.52 9.8 9.3 1 2 0.09 2e+02 1.4 0.6 5 30 35 61 32 67 0.59 Family of unknown function (DUF5385) DUF5385 PF17359.2 220 CP017417_00003 - 124 0.52 9.8 9.3 2 2 4.4e-05 0.099 12.2 2.6 2 31 91 122 90 124 0.50 Family of unknown function (DUF5385) NVEALA PF14055.6 64 CP017417_00003 - 124 4.1 7.4 6.4 1 3 1 2.3e+03 -1.4 0.1 15 15 43 43 30 67 0.50 NVEALA protein NVEALA PF14055.6 64 CP017417_00003 - 124 4.1 7.4 6.4 2 3 0.04 89 3.2 0.5 9 35 72 98 62 99 0.79 NVEALA protein NVEALA PF14055.6 64 CP017417_00003 - 124 4.1 7.4 6.4 3 3 0.0019 4.2 7.4 0.2 6 29 99 122 95 124 0.86 NVEALA protein TssN PF17555.2 275 CP017417_00003 - 124 4.7 6.5 20.7 1 1 0.0026 5.9 6.2 20.7 38 142 9 116 2 122 0.71 Type VI secretion system, TssN DUF2663 PF10864.8 127 CP017417_00003 - 124 6.7 7.1 10.9 1 2 0.1 2.3e+02 2.1 1.5 51 78 30 57 1 64 0.47 Protein of unknown function (DUF2663) DUF2663 PF10864.8 127 CP017417_00003 - 124 6.7 7.1 10.9 2 2 0.016 36 4.8 8.5 17 83 56 121 27 123 0.75 Protein of unknown function (DUF2663) Lipase_3 PF01764.25 142 CP017417_00004 - 531 3.6e-08 33.4 0.0 1 1 7.7e-11 1.4e-07 31.5 0.0 49 114 175 241 139 253 0.73 Lipase (class 3) DUF2974 PF11187.8 224 CP017417_00004 - 531 2.8e-07 30.3 0.0 1 1 3.8e-10 6.7e-07 29.1 0.0 7 123 100 233 95 271 0.73 Protein of unknown function (DUF2974) PGAP1 PF07819.13 231 CP017417_00004 - 531 2.7e-05 24.0 0.3 1 2 1.9e-07 0.00034 20.4 0.0 48 114 130 213 91 232 0.72 PGAP1-like protein PGAP1 PF07819.13 231 CP017417_00004 - 531 2.7e-05 24.0 0.3 2 2 0.14 2.5e+02 1.2 0.1 44 83 306 346 271 361 0.77 PGAP1-like protein DUF676 PF05057.14 219 CP017417_00004 - 531 5.3e-05 22.8 0.0 1 1 7.2e-08 0.00013 21.6 0.0 66 105 177 216 168 234 0.71 Putative serine esterase (DUF676) LIDHydrolase PF10230.9 266 CP017417_00004 - 531 0.00045 19.9 0.1 1 1 5.2e-07 0.00093 18.8 0.1 66 101 168 206 133 217 0.71 Lipid-droplet associated hydrolase Abhydrolase_6 PF12697.7 220 CP017417_00004 - 531 0.0017 19.0 0.0 1 1 1.3e-06 0.0024 18.5 0.0 51 87 175 215 140 258 0.74 Alpha/beta hydrolase family UPF0227 PF05728.12 187 CP017417_00004 - 531 0.0021 18.1 0.9 1 3 5.7 1e+04 -3.8 0.1 123 146 54 77 36 87 0.53 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 CP017417_00004 - 531 0.0021 18.1 0.9 2 3 8e-06 0.014 15.3 0.0 40 80 172 211 144 227 0.70 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 CP017417_00004 - 531 0.0021 18.1 0.9 3 3 0.51 9.2e+02 -0.4 0.0 115 145 411 442 388 459 0.73 Uncharacterised protein family (UPF0227) DUF4450 PF14614.6 217 CP017417_00004 - 531 0.016 14.8 0.1 1 1 2.7e-05 0.049 13.2 0.1 6 48 466 508 463 515 0.94 Domain of unknown function (DUF4450) DUF1257 PF06868.11 104 CP017417_00004 - 531 0.24 11.7 2.3 1 3 0.0099 18 5.7 0.1 5 34 33 64 30 81 0.76 Protein of unknown function (DUF1257) DUF1257 PF06868.11 104 CP017417_00004 - 531 0.24 11.7 2.3 2 3 0.021 38 4.6 0.1 29 69 415 455 401 468 0.84 Protein of unknown function (DUF1257) DUF1257 PF06868.11 104 CP017417_00004 - 531 0.24 11.7 2.3 3 3 7.7 1.4e+04 -3.6 0.0 67 78 484 495 477 503 0.65 Protein of unknown function (DUF1257) SBDS PF01172.18 88 CP017417_00004 - 531 0.79 9.8 5.3 1 2 1 1.9e+03 -1.0 0.1 20 41 43 63 27 110 0.69 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS PF01172.18 88 CP017417_00004 - 531 0.79 9.8 5.3 2 2 0.00046 0.83 9.8 1.4 8 31 427 451 420 506 0.79 Shwachman-Bodian-Diamond syndrome (SBDS) protein SseC PF04888.12 317 CP017417_00007 - 1305 0.0012 18.5 0.2 1 1 1.1e-06 0.0032 17.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family APOBEC_C PF05240.14 78 CP017417_00007 - 1305 0.018 15.0 0.5 1 1 3e-05 0.091 12.7 0.5 26 76 766 819 755 821 0.86 APOBEC-like C-terminal domain ThrE PF06738.12 241 CP017417_00007 - 1305 0.019 14.3 0.8 1 1 1.7e-05 0.051 12.9 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter Hormone_2 PF00123.20 28 CP017417_00007 - 1305 0.033 14.1 0.1 1 1 5.2e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone PTS_EIIC_2 PF13303.6 328 CP017417_00007 - 1305 0.037 13.1 1.0 1 1 2.1e-05 0.064 12.3 1.0 21 107 208 297 204 316 0.82 Phosphotransferase system, EIIC TPR_11 PF13414.6 42 CP017417_00007 - 1305 0.064 12.9 0.3 1 1 5.9e-05 0.18 11.5 0.3 13 33 1193 1213 1192 1214 0.96 TPR repeat Glyco_tranf_2_5 PF13712.6 210 CP017417_00009 - 267 0.00068 19.4 3.8 1 1 7.1e-08 0.0013 18.5 3.8 4 77 114 190 111 198 0.85 Glycosyltransferase like family TraG_N PF07916.11 467 CP017417_00010 - 753 3.3e-42 144.9 22.9 1 2 3.7e-46 3.3e-42 144.9 22.9 12 465 2 449 1 455 0.80 TraG-like protein, N-terminal region TraG_N PF07916.11 467 CP017417_00010 - 753 3.3e-42 144.9 22.9 2 2 0.31 2.7e+03 -3.2 4.3 210 287 611 695 581 735 0.49 TraG-like protein, N-terminal region CHMI PF02962.15 124 CP017417_00010 - 753 0.017 15.5 0.1 1 3 0.81 7.3e+03 -2.7 0.0 98 120 21 43 5 51 0.68 5-carboxymethyl-2-hydroxymuconate isomerase CHMI PF02962.15 124 CP017417_00010 - 753 0.017 15.5 0.1 2 3 1.2e-05 0.11 12.9 0.0 47 120 69 144 61 148 0.78 5-carboxymethyl-2-hydroxymuconate isomerase CHMI PF02962.15 124 CP017417_00010 - 753 0.017 15.5 0.1 3 3 0.67 6e+03 -2.5 0.0 45 97 546 600 538 619 0.62 5-carboxymethyl-2-hydroxymuconate isomerase YafQ_toxin PF15738.5 88 CP017417_00013 - 93 2.5e-24 85.4 5.0 1 1 6.3e-28 2.8e-24 85.2 5.0 1 88 4 91 4 91 0.93 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 CP017417_00013 - 93 9.5e-06 26.1 0.3 1 1 2.7e-09 1.2e-05 25.8 0.3 3 89 8 89 6 90 0.79 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 87 CP017417_00013 - 93 0.00012 22.0 2.5 1 1 3.3e-08 0.00015 21.7 2.5 3 84 8 91 6 93 0.81 ParE-like toxin of type II bacterial toxin-antitoxin system BTHB PF18410.1 72 CP017417_00013 - 93 0.086 12.7 1.5 1 3 0.04 1.8e+02 2.0 0.1 53 66 11 24 5 30 0.79 Basic tilted helix bundle domain BTHB PF18410.1 72 CP017417_00013 - 93 0.086 12.7 1.5 2 3 0.16 7.4e+02 0.1 0.0 45 61 31 47 22 48 0.82 Basic tilted helix bundle domain BTHB PF18410.1 72 CP017417_00013 - 93 0.086 12.7 1.5 3 3 0.0002 0.87 9.4 0.1 34 63 45 74 41 80 0.92 Basic tilted helix bundle domain HicB_lk_antitox PF15919.5 123 CP017417_00015 - 120 8.6e-09 35.6 0.3 1 2 4.3e-06 0.039 14.1 0.0 1 60 13 75 13 80 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 CP017417_00015 - 120 8.6e-09 35.6 0.3 2 2 4e-08 0.00036 20.7 0.1 88 123 78 109 73 109 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 CP017417_00015 - 120 0.16 11.9 0.0 1 1 3.3e-05 0.3 11.0 0.0 3 35 81 113 80 116 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HicA_toxin PF07927.12 58 CP017417_00016 - 75 1.7e-06 28.0 0.0 1 1 1.4e-10 2.5e-06 27.4 0.0 5 55 24 71 20 72 0.88 HicA toxin of bacterial toxin-antitoxin, Fic PF02661.18 97 CP017417_00018 - 133 4.4e-05 24.3 0.0 1 1 8.9e-09 8e-05 23.5 0.0 23 97 6 76 2 76 0.72 Fic/DOC family Como_LCP PF02247.16 373 CP017417_00018 - 133 0.056 12.0 0.1 1 1 7.2e-06 0.065 11.8 0.1 238 302 51 116 35 129 0.88 Large coat protein DHHA1 PF02272.19 138 CP017417_00019 - 189 0.18 12.2 1.6 1 1 2e-05 0.37 11.2 1.6 15 92 36 117 22 129 0.83 DHHA1 domain DUF3825 PF12873.7 239 CP017417_00020 - 335 2.2e-28 99.3 0.4 1 1 1.9e-32 3.4e-28 98.7 0.4 1 239 106 330 106 330 0.86 Domain of unknown function (DUF3825) DUF447 PF04289.12 176 CP017417_00021 - 130 0.029 14.1 0.1 1 1 7.7e-06 0.046 13.5 0.1 42 111 21 87 19 96 0.85 Protein of unknown function (DUF447) WH1 PF00568.23 111 CP017417_00021 - 130 0.04 13.9 0.3 1 1 1e-05 0.063 13.2 0.3 9 80 28 98 20 106 0.84 WH1 domain Cob_adeno_trans PF01923.18 164 CP017417_00021 - 130 0.045 13.9 0.1 1 1 9.9e-06 0.059 13.5 0.1 25 104 37 127 32 130 0.79 Cobalamin adenosyltransferase IMS_C PF11799.8 118 CP017417_00023 - 127 0.00012 22.7 0.0 1 1 2.2e-08 0.00019 22.1 0.0 59 111 11 62 3 67 0.88 impB/mucB/samB family C-terminal domain Patched PF02460.18 811 CP017417_00023 - 127 0.024 12.8 0.2 1 1 3.1e-06 0.027 12.5 0.2 3 75 52 122 50 126 0.91 Patched family IMS PF00817.20 150 CP017417_00025 - 220 1.5e-25 89.9 0.2 1 1 2.2e-29 4e-25 88.6 0.2 1 149 10 192 10 193 0.86 impB/mucB/samB family CooC_C PF15976.5 93 CP017417_00027 - 53 0.015 15.3 0.0 1 1 1.8e-06 0.016 15.2 0.0 12 46 5 39 1 43 0.89 CS1-pili formation C-terminal PemK_toxin PF02452.17 111 CP017417_00027 - 53 0.04 14.3 0.0 1 1 5.3e-06 0.048 14.1 0.0 81 108 2 29 1 32 0.91 PemK-like, MazF-like toxin of type II toxin-antitoxin system HTH_3 PF01381.22 55 CP017417_00028 - 44 3.7e-07 30.1 0.0 1 1 4.6e-10 4.1e-07 30.0 0.0 1 36 9 43 9 44 0.94 Helix-turn-helix HTH_26 PF13443.6 63 CP017417_00028 - 44 0.00017 21.9 0.0 1 1 2.1e-07 0.00019 21.8 0.0 2 35 9 42 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 CP017417_00028 - 44 0.00074 19.0 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 65 CP017417_00028 - 44 0.0012 18.7 0.0 1 1 1.4e-06 0.0013 18.6 0.0 1 32 9 41 9 44 0.81 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_19 PF12844.7 65 CP017417_00028 - 44 0.0012 18.8 0.0 1 1 1.5e-06 0.0013 18.7 0.0 4 37 9 42 7 44 0.90 Helix-turn-helix domain HTH_23 PF13384.6 50 CP017417_00028 - 44 0.002 17.8 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 CP017417_00028 - 44 0.0038 17.3 0.3 1 1 6e-06 0.0054 16.8 0.3 25 46 1 22 1 40 0.90 ENT domain HTH_31 PF13560.6 64 CP017417_00028 - 44 0.0048 17.2 0.0 1 1 5.8e-06 0.0052 17.1 0.0 12 40 15 43 9 44 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 CP017417_00028 - 44 0.0094 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 CP017417_00028 - 44 0.0099 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 CP017417_00028 - 44 0.013 14.8 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 CP017417_00028 - 44 0.02 14.8 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 CP017417_00028 - 44 0.021 14.6 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain Phage_CI_repr PF07022.13 65 CP017417_00028 - 44 0.028 14.5 0.0 1 1 3.5e-05 0.032 14.3 0.0 3 33 9 38 7 42 0.84 Bacteriophage CI repressor helix-turn-helix domain HTH_AsnC-type PF13404.6 42 CP017417_00028 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 51 CP017417_00028 - 44 0.031 14.5 0.0 1 2 0.02 18 5.6 0.0 4 16 9 21 9 25 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 CP017417_00028 - 44 0.031 14.5 0.0 2 2 0.0034 3 8.1 0.0 6 28 22 43 19 44 0.83 Helix-turn-helix domain Sigma70_r4 PF04545.16 50 CP017417_00028 - 44 0.035 13.6 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 MerR PF00376.23 38 CP017417_00028 - 44 0.08 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 CP017417_00028 - 44 0.08 12.7 0.0 2 2 0.0096 8.6 6.2 0.0 4 18 22 36 21 43 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 CP017417_00028 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 CP017417_00028 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain DUF5601 PF18151.1 65 CP017417_00030 - 133 0.0084 16.4 0.4 1 1 1.8e-06 0.016 15.5 0.4 12 55 44 89 29 90 0.86 Domain of unknown function (DUF5601) IFP_35_N PF07334.13 76 CP017417_00030 - 133 0.14 12.2 4.9 1 3 0.0049 44 4.2 0.0 57 72 5 20 3 23 0.89 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 CP017417_00030 - 133 0.14 12.2 4.9 2 3 0.15 1.3e+03 -0.5 0.1 1 20 42 61 29 73 0.74 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 CP017417_00030 - 133 0.14 12.2 4.9 3 3 0.00022 2 8.5 0.4 6 28 97 119 90 126 0.88 Interferon-induced 35 kDa protein (IFP 35) N-terminus HSBP1 PF06825.12 51 CP017417_00033 - 126 0.025 14.4 0.1 1 1 9.8e-06 0.044 13.6 0.1 14 43 65 94 61 98 0.87 Heat shock factor binding protein 1 CCDC-167 PF15188.6 84 CP017417_00033 - 126 0.026 14.9 0.3 1 1 8.7e-06 0.039 14.3 0.3 36 79 48 108 20 110 0.72 Coiled-coil domain-containing protein 167 DUF3450 PF11932.8 241 CP017417_00033 - 126 0.11 11.8 0.2 1 1 2.9e-05 0.13 11.6 0.2 36 105 35 104 19 112 0.82 Protein of unknown function (DUF3450) DUF4164 PF13747.6 89 CP017417_00033 - 126 0.11 12.8 0.3 1 1 5.3e-05 0.24 11.7 0.1 13 42 65 95 60 98 0.89 Domain of unknown function (DUF4164) Phage_NinH PF06322.11 60 CP017417_00034 - 47 0.1 12.5 0.2 1 1 7e-06 0.13 12.2 0.2 36 56 26 46 21 47 0.90 Phage NinH protein WGR PF05406.15 80 CP017417_00038 - 75 4.2e-07 29.9 0.3 1 1 5.5e-11 4.9e-07 29.7 0.3 3 73 4 74 2 75 0.86 WGR domain Cadherin_pro PF08758.11 90 CP017417_00038 - 75 0.035 14.3 0.0 1 1 4.8e-06 0.043 14.0 0.0 15 44 26 55 12 62 0.80 Cadherin prodomain like FlaC_arch PF05377.11 55 CP017417_00039 - 76 0.0068 16.8 1.5 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 CP017417_00039 - 76 0.0068 16.8 1.5 2 2 3.8e-07 0.0068 16.8 1.5 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) Phage_integrase PF00589.22 172 CP017417_00040 - 312 4.9e-24 85.0 0.5 1 1 3.2e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 CP017417_00040 - 312 1.2e-05 25.5 4.2 1 2 1.5e-08 3.9e-05 23.9 1.8 1 79 16 99 16 102 0.92 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 CP017417_00040 - 312 1.2e-05 25.5 4.2 2 2 4 1e+04 -3.1 0.0 38 54 125 141 115 151 0.53 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP017417_00040 - 312 0.00017 21.8 4.6 1 3 6.8e-08 0.00017 21.8 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP017417_00040 - 312 0.00017 21.8 4.6 2 3 1.1 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP017417_00040 - 312 0.00017 21.8 4.6 3 3 2.1 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 85 CP017417_00040 - 312 0.0026 18.2 8.9 1 3 0.00099 2.5 8.6 0.3 35 80 5 49 2 53 0.86 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 CP017417_00040 - 312 0.0026 18.2 8.9 2 3 3.4e-06 0.0086 16.5 5.3 2 79 16 101 15 104 0.90 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 CP017417_00040 - 312 0.0026 18.2 8.9 3 3 2 5.2e+03 -2.0 0.1 8 22 285 299 281 302 0.77 Phage integrase, N-terminal SAM-like domain Phyto-Amp PF15438.6 195 CP017417_00040 - 312 0.0092 15.8 0.3 1 1 6.5e-06 0.017 15.0 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma Phage_int_SAM_3 PF14659.6 58 CP017417_00040 - 312 0.027 14.7 3.2 1 1 4.2e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain YbjN PF10722.9 127 CP017417_00040 - 312 0.029 14.4 0.3 1 2 0.00055 1.4 9.0 0.1 38 77 96 135 91 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 CP017417_00040 - 312 0.029 14.4 0.3 2 2 0.047 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator Prok-TraM PF09228.10 102 CP017417_00042 - 298 0.085 13.2 0.0 1 1 2e-05 0.18 12.2 0.0 13 93 35 115 24 120 0.89 Prokaryotic Transcriptional repressor TraM Flu_B_M2 PF04772.12 109 CP017417_00042 - 298 3 8.1 11.1 1 3 2e-05 0.18 12.0 0.3 43 102 80 139 62 142 0.90 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 CP017417_00042 - 298 3 8.1 11.1 2 3 0.017 1.5e+02 2.6 2.9 26 87 134 195 133 210 0.87 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 CP017417_00042 - 298 3 8.1 11.1 3 3 0.26 2.3e+03 -1.2 0.0 73 104 235 266 227 270 0.68 Influenza B matrix protein 2 (BM2) TagA PF12561.8 99 CP017417_00043 - 210 1.1 9.7 3.4 1 2 0.00094 17 5.9 0.7 31 90 68 127 55 133 0.81 ToxR activated gene A lipoprotein domain TagA PF12561.8 99 CP017417_00043 - 210 1.1 9.7 3.4 2 2 0.0027 49 4.4 0.1 63 88 184 209 166 210 0.84 ToxR activated gene A lipoprotein domain DUF4299 PF14132.6 301 CP017417_00044 - 116 3.2e-08 33.4 0.1 1 1 6.2e-12 3.7e-08 33.2 0.1 189 300 12 110 5 111 0.85 Domain of unknown function (DUF4299) A2M PF00207.22 92 CP017417_00044 - 116 0.11 12.3 0.0 1 1 2.6e-05 0.16 11.9 0.0 17 56 49 89 36 94 0.81 Alpha-2-macroglobulin family XPG_I PF00867.18 94 CP017417_00044 - 116 0.13 12.7 0.0 1 1 2.6e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region AHH PF14412.6 114 CP017417_00046 - 259 5.3e-16 58.7 1.4 1 1 1.1e-19 9.6e-16 57.9 1.4 10 113 155 241 148 242 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH RRF PF01765.19 162 CP017417_00046 - 259 0.12 12.3 4.7 1 2 1.8e-05 0.16 11.9 0.1 124 153 163 193 112 199 0.86 Ribosome recycling factor RRF PF01765.19 162 CP017417_00046 - 259 0.12 12.3 4.7 2 2 0.025 2.3e+02 1.7 1.1 121 146 215 242 207 256 0.69 Ribosome recycling factor Glyco_hydro_59 PF02057.15 294 CP017417_00048 - 287 0.022 14.0 1.2 1 1 2.4e-06 0.043 13.1 1.2 109 165 106 159 99 178 0.87 Glycosyl hydrolase family 59 Nucleoside_tran PF01733.18 309 CP017417_00050 - 289 0.15 11.4 2.7 1 1 4.6e-05 0.28 10.5 2.7 71 192 10 129 3 134 0.66 Nucleoside transporter Turandot PF07240.11 81 CP017417_00050 - 289 0.19 11.7 1.3 1 2 0.75 4.5e+03 -2.3 0.0 17 40 25 48 22 54 0.61 Stress-inducible humoral factor Turandot Turandot PF07240.11 81 CP017417_00050 - 289 0.19 11.7 1.3 2 2 8e-05 0.48 10.4 0.6 2 28 247 273 246 288 0.77 Stress-inducible humoral factor Turandot Sigma70_ner PF04546.13 204 CP017417_00050 - 289 0.2 11.5 6.4 1 2 0.03 1.8e+02 1.9 0.4 16 78 33 83 20 120 0.46 Sigma-70, non-essential region Sigma70_ner PF04546.13 204 CP017417_00050 - 289 0.2 11.5 6.4 2 2 1.7e-05 0.1 12.4 1.0 88 125 238 276 228 285 0.90 Sigma-70, non-essential region Rapsyn_N PF10579.9 80 CP017417_00052 - 358 0.53 10.4 3.8 1 3 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 CP017417_00052 - 358 0.53 10.4 3.8 2 3 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 CP017417_00052 - 358 0.53 10.4 3.8 3 3 0.24 4.3e+03 -2.1 0.1 19 34 340 355 329 356 0.74 Rapsyn N-terminal myristoylation and linker region DUF2768 PF10966.8 58 CP017417_00053 - 114 0.0086 16.5 0.2 1 2 1.9e-06 0.0086 16.5 0.2 22 57 37 72 35 72 0.95 Protein of unknown function (DUF2768) DUF2768 PF10966.8 58 CP017417_00053 - 114 0.0086 16.5 0.2 2 2 0.4 1.8e+03 -0.5 1.3 6 13 96 103 79 108 0.53 Protein of unknown function (DUF2768) DiS_P_DiS PF06750.13 84 CP017417_00053 - 114 0.027 14.6 0.4 1 1 1.2e-05 0.054 13.6 0.4 29 73 6 50 2 59 0.84 Bacterial Peptidase A24 N-terminal domain DZR PF12773.7 49 CP017417_00053 - 114 0.028 14.4 0.3 1 1 8.3e-06 0.037 14.0 0.3 13 37 5 38 2 45 0.88 Double zinc ribbon zinc_ribbon_4 PF13717.6 36 CP017417_00053 - 114 0.14 12.1 4.3 1 2 0.072 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP017417_00053 - 114 0.14 12.1 4.3 2 2 3.5e-05 0.16 12.0 0.3 3 16 30 43 29 47 0.86 zinc-ribbon domain Myc-LZ PF02344.15 31 CP017417_00054 - 34 0.045 13.9 0.4 1 1 3e-06 0.054 13.6 0.4 8 18 15 25 14 27 0.94 Myc leucine zipper domain Importin_rep PF18773.1 40 CP017417_00055 - 260 0.018 14.7 0.1 1 1 6.7e-06 0.04 13.6 0.1 16 27 231 242 226 249 0.90 Importin 13 repeat DUF327 PF03885.13 143 CP017417_00055 - 260 0.075 13.0 0.1 1 3 0.41 2.5e+03 -1.7 0.1 97 109 43 55 22 76 0.50 Protein of unknown function (DUF327) DUF327 PF03885.13 143 CP017417_00055 - 260 0.075 13.0 0.1 2 3 0.96 5.7e+03 -2.8 0.0 22 24 140 142 116 165 0.49 Protein of unknown function (DUF327) DUF327 PF03885.13 143 CP017417_00055 - 260 0.075 13.0 0.1 3 3 1.3e-05 0.075 13.0 0.1 48 85 217 254 191 258 0.89 Protein of unknown function (DUF327) BLOC1_2 PF10046.9 96 CP017417_00055 - 260 0.94 9.8 4.4 1 3 2.1 1.2e+04 -3.4 0.1 38 61 48 71 47 73 0.65 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP017417_00055 - 260 0.94 9.8 4.4 2 3 4.3e-05 0.26 11.6 0.4 22 75 115 172 110 179 0.87 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP017417_00055 - 260 0.94 9.8 4.4 3 3 0.81 4.8e+03 -2.1 0.0 70 79 245 254 228 258 0.43 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GPD PF05954.11 304 CP017417_00056 - 833 5.9e-18 65.2 0.0 1 1 1e-21 9.4e-18 64.5 0.0 22 281 73 360 45 376 0.76 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 CP017417_00056 - 833 0.11 12.2 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 CP017417_00056 - 833 0.11 12.2 0.0 2 2 0.00042 3.8 7.2 0.0 19 49 456 486 447 513 0.81 TCL1/MTCP1 family T6SS_TssG PF06996.11 299 CP017417_00057 - 302 3.5e-47 161.1 0.0 1 1 2.2e-51 3.9e-47 160.9 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG T6SS_TssF PF05947.12 603 CP017417_00058 - 573 1.6e-110 370.4 0.0 1 1 1e-114 1.8e-110 370.3 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF GPW_gp25 PF04965.14 95 CP017417_00059 - 130 2.2e-09 36.9 0.0 1 1 4.8e-13 2.9e-09 36.6 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 CP017417_00059 - 130 0.021 14.7 0.3 1 1 4.5e-06 0.027 14.3 0.3 94 159 21 87 5 92 0.87 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 CP017417_00059 - 130 0.072 12.6 0.2 1 2 2.9e-05 0.17 11.3 0.1 82 121 5 46 1 64 0.84 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 CP017417_00059 - 130 0.072 12.6 0.2 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 422 CP017417_00060 - 484 6e-170 565.6 0.0 1 1 7.9e-174 7.1e-170 565.3 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 CP017417_00060 - 484 0.33 11.0 2.6 1 4 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 CP017417_00060 - 484 0.33 11.0 2.6 2 4 1.5 1.4e+04 -3.9 0.0 103 117 130 143 127 147 0.66 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 CP017417_00060 - 484 0.33 11.0 2.6 3 4 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 CP017417_00060 - 484 0.33 11.0 2.6 4 4 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 155 CP017417_00061 - 161 6.4e-52 175.5 3.9 1 1 8e-56 7.2e-52 175.3 3.9 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 CP017417_00061 - 161 0.14 10.8 0.0 1 1 1.8e-05 0.16 10.5 0.0 171 227 55 111 40 127 0.90 Chitin synthase T6SS_VasJ PF16989.5 255 CP017417_00062 - 415 1.2e-12 47.9 0.0 1 1 3.9e-16 1.7e-12 47.3 0.0 3 153 176 323 174 408 0.84 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 CP017417_00062 - 415 0.00014 22.0 0.2 1 2 1.8e-07 0.0008 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 CP017417_00062 - 415 0.00014 22.0 0.2 2 2 0.31 1.4e+03 -0.6 0.0 47 71 185 209 162 212 0.83 ImpA, N-terminal, type VI secretion system PX PF00787.24 113 CP017417_00062 - 415 0.074 13.0 14.5 1 3 0.00025 1.1 9.2 2.4 31 111 33 130 20 131 0.67 PX domain PX PF00787.24 113 CP017417_00062 - 415 0.074 13.0 14.5 2 3 0.00084 3.8 7.5 0.2 16 112 155 275 132 276 0.68 PX domain PX PF00787.24 113 CP017417_00062 - 415 0.074 13.0 14.5 3 3 0.052 2.3e+02 1.8 0.7 22 97 316 396 296 404 0.70 PX domain TetR_C_24 PF17932.1 114 CP017417_00062 - 415 0.19 12.0 0.0 1 1 8.8e-05 0.4 11.0 0.0 20 68 71 119 62 132 0.87 Tetracyclin repressor-like, C-terminal domain T6SS-SciN PF12790.7 120 CP017417_00063 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 428 CP017417_00064 - 465 4.7e-112 374.8 0.0 1 1 3.1e-116 5.5e-112 374.6 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 205 CP017417_00065 - 257 3.6e-35 121.5 0.0 1 1 2.3e-39 4.2e-35 121.4 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_HCP PF05638.12 129 CP017417_00066 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 259 CP017417_00067 - 1175 6.2e-41 140.5 0.0 1 1 4.1e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 CP017417_00067 - 1175 5.9e-40 137.1 0.5 1 1 4.1e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 CP017417_00067 - 1175 8.2e-27 94.5 2.1 1 1 4.9e-30 1.3e-26 93.9 2.1 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 CP017417_00067 - 1175 0.0003 20.7 0.0 1 2 8.9e-06 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 CP017417_00067 - 1175 0.0003 20.7 0.0 2 2 0.047 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 CP017417_00067 - 1175 0.0011 19.0 0.1 1 2 1.7e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 CP017417_00067 - 1175 0.0011 19.0 0.1 2 2 4.1 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 CP017417_00067 - 1175 0.0041 16.8 4.8 1 3 1.4e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 CP017417_00067 - 1175 0.0041 16.8 4.8 2 3 0.13 3.4e+02 0.8 0.0 41 77 451 487 432 583 0.80 O-Antigen ligase Wzy_C PF04932.15 155 CP017417_00067 - 1175 0.0041 16.8 4.8 3 3 0.076 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 CP017417_00067 - 1175 0.055 13.2 0.1 1 2 0.00017 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 CP017417_00067 - 1175 0.055 13.2 0.1 2 2 0.76 1.9e+03 -1.3 0.0 22 37 841 856 831 870 0.75 P-loop containing region of AAA domain FHA PF00498.26 69 CP017417_00068 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 CP017417_00068 - 299 0.0007 19.9 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 CP017417_00068 - 299 0.0007 19.9 0.0 2 2 0.23 1.4e+03 -0.3 0.0 31 57 199 225 198 231 0.89 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 CP017417_00068 - 299 0.05 14.0 3.1 1 2 0.044 2.6e+02 2.1 0.1 18 58 107 147 105 150 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 CP017417_00068 - 299 0.05 14.0 3.1 2 2 7.4e-05 0.44 11.0 0.9 21 82 151 212 146 218 0.92 Ferredoxin-fold anticodon binding domain DUF3870 PF12986.7 94 CP017417_00069 - 433 0.11 12.8 0.0 1 1 1.4e-05 0.24 11.6 0.0 11 62 4 58 1 70 0.79 Domain of unknown function (DUF3870) DUF2459 PF09601.10 171 CP017417_00072 - 432 0.053 13.3 1.1 1 2 1.3e-05 0.12 12.2 0.1 87 163 131 199 119 201 0.72 Protein of unknown function (DUF2459) DUF2459 PF09601.10 171 CP017417_00072 - 432 0.053 13.3 1.1 2 2 0.32 2.8e+03 -2.1 0.1 143 143 289 289 239 346 0.63 Protein of unknown function (DUF2459) BLOC1_2 PF10046.9 96 CP017417_00072 - 432 0.1 12.9 2.0 1 2 2.8e-05 0.25 11.7 1.0 44 95 263 314 260 315 0.94 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP017417_00072 - 432 0.1 12.9 2.0 2 2 2 1.8e+04 -4.1 0.0 20 30 349 359 345 364 0.58 Biogenesis of lysosome-related organelles complex-1 subunit 2 Put_DNA-bind_N PF06971.13 49 CP017417_00073 - 141 0.016 15.2 0.0 1 1 1.5e-06 0.027 14.5 0.0 11 34 4 27 3 30 0.95 Putative DNA-binding protein N-terminus Toprim_3 PF13362.6 95 CP017417_00074 - 409 2.4e-08 34.2 0.1 1 2 1.4 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 CP017417_00074 - 409 2.4e-08 34.2 0.1 2 2 1.4e-11 6.4e-08 32.9 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 CP017417_00074 - 409 0.017 15.4 0.2 1 2 0.024 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 CP017417_00074 - 409 0.017 15.4 0.2 2 2 0.00027 1.2 9.4 0.0 15 83 283 359 277 382 0.82 Retrotransposon gag protein DUF2315 PF10231.9 123 CP017417_00074 - 409 0.023 14.8 6.8 1 3 0.00028 1.3 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP017417_00074 - 409 0.023 14.8 6.8 2 3 0.0016 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP017417_00074 - 409 0.023 14.8 6.8 3 3 1.3 5.9e+03 -2.7 0.0 20 90 355 373 339 384 0.54 Apoptogenic protein 1 5_3_exonuc PF01367.20 97 CP017417_00074 - 409 0.25 12.0 1.7 1 2 0.62 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP017417_00074 - 409 0.25 12.0 1.7 2 2 0.00012 0.53 10.9 0.2 15 81 322 384 321 401 0.72 5'-3' exonuclease, C-terminal SAM fold NYN PF01936.18 147 CP017417_00076 - 180 1.1e-09 39.0 0.0 1 1 2e-13 1.2e-09 38.8 0.0 60 123 74 146 15 161 0.80 NYN domain Peroxin-22 PF12827.7 113 CP017417_00076 - 180 0.004 17.0 0.6 1 1 1.3e-06 0.0079 16.1 0.6 25 105 81 162 46 169 0.76 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 CP017417_00076 - 180 0.029 15.0 0.0 1 1 8.3e-06 0.049 14.2 0.0 61 103 100 142 77 142 0.87 PIN domain AAA_31 PF13614.6 177 CP017418_00001 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 CP017418_00001 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 CP017418_00001 - 186 0.0021 18.1 0.9 1 1 2.9e-06 0.017 15.2 0.9 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP017418_00001 - 186 0.014 14.8 0.0 1 1 3.2e-06 0.019 14.4 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase RHH_7 PF16777.5 74 CP017418_00002 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 CP017418_00003 - 1931 1.4e-16 60.1 0.8 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1016 1272 934 1313 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP017418_00003 - 1931 1.4e-16 60.1 0.8 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP017418_00003 - 1931 1.4e-16 60.1 0.8 3 3 1.1 3.9e+03 -3.8 0.0 172 199 1878 1906 1859 1914 0.75 SNF2 family N-terminal domain ResIII PF04851.15 171 CP017418_00003 - 1931 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 648 691 638 783 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP017418_00003 - 1931 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 999 1211 998 1242 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP017418_00003 - 1931 4.9e-08 33.2 8.3 3 3 0.34 1.2e+03 -0.7 5.2 33 121 1797 1903 1746 1928 0.65 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP017418_00003 - 1931 9.4e-07 29.2 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1076 1104 1028 1108 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP017418_00003 - 1931 9.4e-07 29.2 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP017418_00003 - 1931 1.3e-05 25.0 2.0 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1003 1108 1002 1204 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 CP017418_00003 - 1931 1.3e-05 25.0 2.0 2 2 0.15 5.5e+02 0.2 0.1 120 143 1883 1908 1832 1928 0.67 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP017418_00003 - 1931 3e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 371 471 369 474 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP017418_00003 - 1931 3e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 660 699 644 718 0.65 Eco57I restriction-modification methylase HTH_19 PF12844.7 65 CP017418_00004 - 314 1e-05 25.5 0.2 1 2 0.0055 7.1 6.7 0.0 11 31 9 29 1 42 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 CP017418_00004 - 314 1e-05 25.5 0.2 2 2 8.1e-06 0.01 15.8 0.0 27 64 116 152 91 153 0.90 Helix-turn-helix domain HTH_3 PF01381.22 55 CP017418_00004 - 314 5.4e-05 23.2 0.0 1 2 3.6e-07 0.00046 20.2 0.0 2 29 3 30 2 30 0.90 Helix-turn-helix HTH_3 PF01381.22 55 CP017418_00004 - 314 5.4e-05 23.2 0.0 2 2 0.67 8.6e+02 0.1 0.0 26 55 118 147 107 147 0.85 Helix-turn-helix Phage_CI_repr PF07022.13 65 CP017418_00004 - 314 0.0011 19.0 0.0 1 2 6.6e-05 0.084 13.0 0.0 11 49 10 47 2 50 0.77 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 CP017418_00004 - 314 0.0011 19.0 0.0 2 2 0.064 82 3.4 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 CP017418_00004 - 314 0.0078 15.7 0.0 1 2 8.2e-05 0.11 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 CP017418_00004 - 314 0.0078 15.7 0.0 2 2 0.29 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 CP017418_00004 - 314 0.015 15.4 0.0 1 1 2.9e-05 0.037 14.2 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 CP017418_00004 - 314 0.016 15.0 0.1 1 2 5.1e-05 0.065 13.1 0.0 4 36 5 37 2 49 0.75 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 CP017418_00004 - 314 0.016 15.0 0.1 2 2 2.5 3.2e+03 -1.9 0.1 38 47 290 299 289 300 0.87 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 CP017418_00004 - 314 0.019 14.7 0.0 1 1 3.5e-05 0.045 13.6 0.0 16 37 7 30 1 36 0.86 Homeodomain-like domain Imm3 PF14425.6 119 CP017418_00004 - 314 0.042 13.9 0.1 1 1 6.8e-05 0.087 12.9 0.1 33 113 26 104 2 109 0.75 Immunity protein Imm3 HTH_26 PF13443.6 63 CP017418_00004 - 314 0.071 13.6 0.0 1 1 0.00012 0.16 12.4 0.0 3 30 3 30 1 38 0.88 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.7 51 CP017418_00004 - 314 0.097 12.9 0.0 1 2 0.13 1.7e+02 2.5 0.0 5 16 3 14 2 16 0.90 Helix-turn-helix domain HTH_17 PF12728.7 51 CP017418_00004 - 314 0.097 12.9 0.0 2 2 0.0011 1.4 9.2 0.0 5 27 14 36 11 42 0.83 Helix-turn-helix domain HTH_31 PF13560.6 64 CP017418_00004 - 314 0.1 12.9 0.0 1 1 0.00016 0.2 12.0 0.0 12 33 8 29 2 40 0.88 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 CP017418_00004 - 314 0.13 11.9 0.0 1 1 0.00027 0.35 10.6 0.0 25 46 9 30 5 30 0.93 Sigma-70, region 4 Phage_AlpA PF05930.12 51 CP017418_00004 - 314 0.14 12.0 0.0 1 2 0.015 20 5.1 0.0 6 19 2 15 1 18 0.89 Prophage CP4-57 regulatory protein (AlpA) Phage_AlpA PF05930.12 51 CP017418_00004 - 314 0.14 12.0 0.0 2 2 0.0031 4 7.3 0.0 5 23 12 30 11 35 0.88 Prophage CP4-57 regulatory protein (AlpA) HTH_Mga PF08280.11 60 CP017418_00004 - 314 0.15 12.1 1.8 1 3 0.0044 5.6 7.1 0.1 21 37 11 27 4 30 0.89 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP017418_00004 - 314 0.15 12.1 1.8 2 3 0.065 83 3.3 0.0 25 59 41 75 32 76 0.80 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP017418_00004 - 314 0.15 12.1 1.8 3 3 9 1.2e+04 -3.5 0.0 46 50 94 98 86 105 0.47 M protein trans-acting positive regulator (MGA) HTH domain Relaxase PF03432.14 242 CP017418_00005 - 462 5.1e-10 39.4 7.2 1 2 2.9e-14 5.1e-10 39.4 7.2 48 228 119 296 70 309 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP017418_00005 - 462 5.1e-10 39.4 7.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 CP017418_00006 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP017418_00006 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP017418_00006 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP017418_00006 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP017418_00006 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP017418_00006 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP017418_00006 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 CP017418_00006 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP017418_00006 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 CP017418_00006 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP017418_00006 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain CdvA PF18822.1 123 CP017418_00007 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP017418_00007 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 CP017418_00007 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 CP017418_00007 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 CP017418_00007 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 CP017418_00009 - 408 0.00054 20.3 0.0 1 1 6.2e-08 0.0011 19.3 0.0 3 93 270 374 268 376 0.77 Toprim domain DUF4223 PF13978.6 54 CP017418_00010 - 97 0.007 16.3 0.0 1 1 1.7e-06 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) nec1 PF10379.9 184 CP017418_00010 - 97 0.067 12.7 0.0 1 1 1.1e-05 0.099 12.1 0.0 65 105 56 94 35 96 0.75 Virulence protein nec1 Sdh_cyt PF01127.22 121 CP017418_00011 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 CP017418_00011 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 CP017418_00011 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 CP017418_00013 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 CP017418_00014 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 CP017418_00015 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 CP017418_00015 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP017418_00015 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP017418_00015 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP017418_00015 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 CP017418_00015 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 CP017418_00015 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 CP017418_00015 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP017418_00015 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 CP017418_00015 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 CP017418_00015 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP017418_00015 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP017418_00015 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 CP017418_00016 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP017418_00016 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 CP017418_00016 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 CP017418_00016 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP017418_00016 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP017418_00016 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP017418_00016 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain CRISPR_Cas2 PF09827.9 76 CP017418_00017 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP017418_00017 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 TrbC PF04956.13 99 CP017418_00019 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP017418_00019 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 CP017418_00020 - 922 4e-51 174.0 0.4 1 1 2e-54 9.1e-51 172.9 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP017418_00020 - 922 3.7e-21 75.1 1.1 1 1 1.4e-24 6.4e-21 74.4 1.1 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 CP017418_00020 - 922 4.4e-07 29.2 0.5 1 1 2.2e-10 1e-06 28.0 0.5 23 320 547 845 535 859 0.73 AAA-like domain DUF87 PF01935.17 227 CP017418_00020 - 922 0.0092 16.1 2.9 1 5 0.46 2e+03 -1.4 0.1 96 202 139 253 122 280 0.55 Helicase HerA, central domain DUF87 PF01935.17 227 CP017418_00020 - 922 0.0092 16.1 2.9 2 5 0.95 4.3e+03 -2.4 0.0 87 124 263 298 245 301 0.78 Helicase HerA, central domain DUF87 PF01935.17 227 CP017418_00020 - 922 0.0092 16.1 2.9 3 5 0.00038 1.7 8.7 0.0 26 49 548 571 539 591 0.86 Helicase HerA, central domain DUF87 PF01935.17 227 CP017418_00020 - 922 0.0092 16.1 2.9 4 5 0.0074 33 4.5 0.2 100 163 638 700 625 733 0.77 Helicase HerA, central domain DUF87 PF01935.17 227 CP017418_00020 - 922 0.0092 16.1 2.9 5 5 0.55 2.5e+03 -1.7 0.0 43 108 751 811 747 849 0.65 Helicase HerA, central domain Phage_pRha PF09669.10 88 CP017418_00021 - 185 6.6e-30 103.5 0.0 1 1 1.7e-33 1e-29 102.9 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 CP017418_00021 - 185 0.0051 16.9 0.0 1 1 1.8e-06 0.011 15.9 0.0 23 90 27 94 23 96 0.94 Uncharacterized protein conserved in archaea (DUF2250) DUF5512 PF17631.2 139 CP017418_00021 - 185 0.094 12.7 0.0 1 1 3.5e-05 0.21 11.6 0.0 77 131 80 130 61 134 0.85 Family of unknown function (DUF5512) DUF3251 PF11622.8 165 CP017418_00022 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 CP017418_00022 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 CP017418_00022 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 CP017418_00022 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP017418_00022 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP017418_00022 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 CP017418_00022 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP017418_00022 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP017418_00022 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 CP017418_00022 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 CP017418_00022 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 CP017418_00022 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP017418_00022 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP017418_00022 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 CP017418_00023 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 CP017418_00024 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP017418_00024 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP017418_00024 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP017418_00024 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP017418_00024 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP017418_00024 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP017418_00024 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 CP017418_00025 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 CP017418_00025 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP017418_00025 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CP017418_00025 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP017418_00025 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 CP017418_00025 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 CP017418_00025 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 CP017418_00025 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP017418_00025 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 CP017418_00025 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 CP017418_00025 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 CP017418_00025 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 CP017418_00025 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 CP017418_00025 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 CP017418_00025 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain TrbL PF04610.14 215 CP017418_00026 - 332 2.7e-31 109.0 32.0 1 2 6e-35 2.7e-31 109.0 32.0 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP017418_00026 - 332 2.7e-31 109.0 32.0 2 2 0.23 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein DUF3176 PF11374.8 107 CP017418_00026 - 332 0.088 13.0 0.5 1 4 0.39 1.8e+03 -0.8 0.0 19 32 30 43 8 58 0.73 Protein of unknown function (DUF3176) DUF3176 PF11374.8 107 CP017418_00026 - 332 0.088 13.0 0.5 2 4 2e-05 0.088 13.0 0.5 62 105 119 166 106 168 0.78 Protein of unknown function (DUF3176) DUF3176 PF11374.8 107 CP017418_00026 - 332 0.088 13.0 0.5 3 4 0.62 2.8e+03 -1.5 0.2 85 106 195 216 176 217 0.49 Protein of unknown function (DUF3176) DUF3176 PF11374.8 107 CP017418_00026 - 332 0.088 13.0 0.5 4 4 1.5 6.6e+03 -2.7 0.1 86 94 240 248 219 256 0.54 Protein of unknown function (DUF3176) T_cell_tran_alt PF15128.6 92 CP017418_00026 - 332 0.18 11.6 1.6 1 2 0.1 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP017418_00026 - 332 0.18 11.6 1.6 2 2 0.00023 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 CP017418_00026 - 332 1.7 9.7 5.2 1 1 0.00061 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 CP017418_00027 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CP017418_00027 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 CP017418_00028 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CP017418_00028 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 CP017418_00029 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CP017418_00029 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CP017418_00029 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 CP017418_00030 - 390 3.1e-48 164.1 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 193 374 193 374 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP017418_00030 - 390 0.028 13.5 0.1 1 1 4.8e-06 0.043 12.9 0.1 31 81 321 371 304 376 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 CP017418_00031 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP017418_00031 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP017418_00031 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP017418_00031 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP017418_00031 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CP017418_00031 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CP017418_00031 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CP017418_00031 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP017418_00031 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CP017418_00031 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP017418_00031 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP017418_00031 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CP017418_00031 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CP017418_00031 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CP017418_00031 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP017418_00031 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CP017418_00031 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CP017418_00031 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CP017418_00031 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CP017418_00031 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CP017418_00031 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP017418_00031 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CP017418_00031 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP017418_00031 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP017418_00031 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CP017418_00031 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CP017418_00031 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 CP017418_00031 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP017418_00031 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP017418_00031 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CP017418_00031 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 CP017418_00031 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 CP017418_00032 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP017418_00032 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP017418_00032 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP017418_00032 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CP017418_00032 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 CP017418_00033 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 CP017418_00033 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 CP017418_00033 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CP017418_00033 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CP017418_00033 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 CP017418_00034 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 CP017418_00035 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 CP017418_00035 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 CP017418_00035 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 CP017418_00035 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP017418_00035 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP017418_00035 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 CP017418_00037 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP017418_00037 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 CP017418_00038 - 687 1e-96 324.5 8.2 1 1 4.8e-100 1.4e-96 324.0 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP017418_00038 - 687 1.5e-12 47.6 0.4 1 2 3.1e-15 9.4e-12 45.1 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP017418_00038 - 687 1.5e-12 47.6 0.4 2 2 1.3 3.9e+03 -1.9 0.1 38 55 537 555 487 568 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 CP017418_00038 - 687 1.5e-06 27.9 5.0 1 1 1.3e-09 3.8e-06 26.6 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger EF-hand_8 PF13833.6 55 CP017418_00038 - 687 0.079 12.8 0.0 1 1 9.4e-05 0.28 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zinc_ribbon_9 PF14369.6 35 CP017418_00038 - 687 0.22 11.8 0.7 1 2 2.9 8.7e+03 -2.9 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP017418_00038 - 687 0.22 11.8 0.7 2 2 0.00013 0.38 11.0 0.0 18 32 624 638 614 640 0.76 zinc-ribbon HTH_34 PF13601.6 80 CP017418_00038 - 687 0.4 10.9 3.3 1 3 0.61 1.8e+03 -0.8 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP017418_00038 - 687 0.4 10.9 3.3 2 3 1.8 5.3e+03 -2.3 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP017418_00038 - 687 0.4 10.9 3.3 3 3 0.00027 0.79 9.9 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain PcfJ PF14284.6 144 CP017418_00039 - 473 5.2e-05 23.2 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP017418_00039 - 473 0.022 14.7 4.0 1 2 0.14 1.2e+03 -0.7 0.2 12 60 218 271 211 299 0.70 Intein splicing domain Intein_splicing PF14890.6 134 CP017418_00039 - 473 0.022 14.7 4.0 2 2 3.6e-06 0.032 14.2 1.5 37 125 311 444 264 453 0.74 Intein splicing domain GTP_EFTU PF00009.27 194 CP017418_00041 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP017418_00041 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP017418_00041 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP017418_00041 - 639 9.3e-17 60.8 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP017418_00041 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP017418_00041 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP017418_00041 - 639 0.00031 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP017418_00041 - 639 0.018 14.9 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP017418_00041 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP017418_00041 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family DUF5442 PF17514.2 107 CP017418_00042 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 CP017418_00042 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 CP017418_00044 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 CP017418_00044 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 CP017418_00044 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 CP017418_00045 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 CP017418_00045 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 CP017418_00045 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP017418_00045 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 CP017418_00046 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CP017418_00046 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 CP017418_00047 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 CP017418_00047 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP017418_00047 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 CP017418_00047 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 CP017418_00047 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 CP017418_00047 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 CP017418_00047 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP017418_00047 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP017418_00047 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 CP017418_00048 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP017418_00048 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP017418_00048 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP017418_00048 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP017418_00048 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP017418_00048 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 CP017418_00049 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP017418_00049 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) Toprim_3 PF13362.6 95 CP017854_00001 - 409 1.6e-08 34.8 0.2 1 2 1.1 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 CP017854_00001 - 409 1.6e-08 34.8 0.2 2 2 7.1e-12 4.3e-08 33.4 0.0 3 94 271 376 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 CP017854_00001 - 409 0.016 15.4 0.1 1 2 0.018 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 CP017854_00001 - 409 0.016 15.4 0.1 2 2 0.00022 1.3 9.3 0.0 15 83 283 359 277 369 0.80 Retrotransposon gag protein DUF2315 PF10231.9 123 CP017854_00001 - 409 0.017 15.2 6.4 1 3 0.00021 1.2 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP017854_00001 - 409 0.017 15.2 6.4 2 3 0.0012 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP017854_00001 - 409 0.017 15.2 6.4 3 3 0.93 5.5e+03 -2.6 0.0 21 91 356 374 339 385 0.55 Apoptogenic protein 1 DUF4223 PF13978.6 54 CP017854_00002 - 92 0.0072 16.3 0.0 1 1 1.5e-06 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) STI1 PF17830.1 55 CP017854_00002 - 92 0.15 12.0 0.0 1 1 4e-05 0.36 10.8 0.0 9 39 22 56 16 59 0.84 STI1 domain TOPRIM_C PF16898.5 128 CP017854_00003 - 69 0.029 14.7 1.5 1 1 1.7e-06 0.031 14.6 1.5 63 124 8 68 2 69 0.88 C-terminal associated domain of TOPRIM Pkinase PF00069.25 264 CP017854_00004 - 336 5.1e-29 101.4 6.3 1 1 4.2e-32 9.5e-29 100.6 6.3 5 153 156 304 153 315 0.90 Protein kinase domain Pkinase_Tyr PF07714.17 259 CP017854_00004 - 336 2e-26 92.8 0.9 1 1 1.4e-29 3.2e-26 92.2 0.9 6 158 157 303 154 315 0.88 Protein tyrosine kinase Pkinase_fungal PF17667.1 408 CP017854_00004 - 336 4e-06 25.9 0.8 1 1 2.6e-09 5.9e-06 25.3 0.8 314 364 254 301 238 318 0.78 Fungal protein kinase DUF2841 PF11001.8 124 CP017854_00004 - 336 0.0032 17.5 0.9 1 2 2.6 5.9e+03 -2.7 0.0 10 56 22 69 17 75 0.60 Protein of unknown function (DUF2841) DUF2841 PF11001.8 124 CP017854_00004 - 336 0.0032 17.5 0.9 2 2 3.9e-06 0.0087 16.1 0.7 15 88 179 263 162 323 0.71 Protein of unknown function (DUF2841) RIO1 PF01163.22 188 CP017854_00004 - 336 0.0073 15.9 2.5 1 2 2 4.5e+03 -3.0 0.0 20 34 46 60 37 78 0.60 RIO1 family RIO1 PF01163.22 188 CP017854_00004 - 336 0.0073 15.9 2.5 2 2 3.3e-06 0.0073 15.9 2.5 25 150 167 291 151 302 0.74 RIO1 family ORC6 PF05460.13 357 CP017854_00004 - 336 0.0086 15.4 0.2 1 1 5.4e-06 0.012 14.9 0.2 192 282 163 254 116 268 0.78 Origin recognition complex subunit 6 (ORC6) Pectate_lyase_3 PF12708.7 215 CP017854_00004 - 336 0.068 13.0 0.4 1 1 6e-05 0.14 12.0 0.4 49 199 148 324 143 333 0.59 Pectate lyase superfamily protein Pex19 PF04614.12 244 CP017854_00004 - 336 3.6 7.3 5.4 1 1 0.0033 7.5 6.2 5.4 152 207 172 228 168 231 0.87 Pex19 protein family HicB_lk_antitox PF15919.5 123 CP017854_00006 - 72 3.6e-09 36.8 0.0 1 1 4.2e-13 3.8e-09 36.7 0.0 3 60 5 61 3 71 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 CP017854_00006 - 72 0.065 12.6 0.0 1 1 7.9e-06 0.071 12.5 0.0 12 60 21 69 15 72 0.92 IRSp53/MIM homology domain AAA_25 PF13481.6 194 CP017854_00007 - 597 1.8e-15 57.0 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 CP017854_00007 - 597 0.00087 18.7 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP017854_00007 - 597 0.00087 18.7 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP017854_00007 - 597 0.0012 18.6 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP017854_00007 - 597 0.0012 18.6 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 CP017854_00007 - 597 0.0035 17.1 0.0 1 1 2.5e-06 0.0073 16.0 0.0 5 122 36 172 32 207 0.72 AAA domain ATPase PF06745.13 231 CP017854_00007 - 597 0.011 15.1 0.1 1 2 2.1e-05 0.064 12.6 0.0 16 70 30 83 26 214 0.87 KaiC ATPase PF06745.13 231 CP017854_00007 - 597 0.011 15.1 0.1 2 2 0.51 1.5e+03 -1.7 0.0 137 160 329 352 321 358 0.83 KaiC CbiA PF01656.23 128 CP017854_00007 - 597 0.18 11.9 0.9 1 1 0.00018 0.53 10.4 1.0 1 29 35 63 35 537 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain GBR_NSP5 PF17580.2 176 CP017854_00008 - 150 0.013 15.3 0.4 1 1 1.3e-06 0.024 14.5 0.4 17 64 43 90 26 97 0.78 Group B Rotavirus Non-structural protein 5 Resolvase PF00239.21 146 CP017854_00010 - 204 1.6e-33 115.9 0.7 1 1 4.7e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP017854_00010 - 204 0.024 14.4 0.8 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP017854_00010 - 204 0.024 14.4 0.8 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 CP017854_00010 - 204 0.024 14.4 0.8 3 3 0.01 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP017854_00010 - 204 0.028 14.5 4.9 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP017854_00010 - 204 0.028 14.5 4.9 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP017854_00010 - 204 0.028 14.5 4.9 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 CP017854_00010 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP017854_00010 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP017854_00010 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 CP017854_00011 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP017854_00011 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 CP017854_00011 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 CP017854_00013 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP017854_00013 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 CP017854_00014 - 922 1.3e-51 175.6 0.7 1 1 5e-55 3e-51 174.5 0.7 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP017854_00014 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 CP017854_00014 - 922 0.045 13.2 0.1 1 1 1.6e-05 0.096 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 CP017854_00015 - 185 1e-28 99.7 0.0 1 1 1.8e-32 1.6e-28 99.1 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 CP017854_00015 - 185 0.00048 20.2 0.0 1 1 1.1e-07 0.001 19.1 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) DUF3251 PF11622.8 165 CP017854_00016 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 CP017854_00016 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 CP017854_00016 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 CP017854_00016 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP017854_00016 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP017854_00016 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 CP017854_00016 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP017854_00016 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP017854_00016 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 CP017854_00016 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 CP017854_00016 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 CP017854_00016 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP017854_00016 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP017854_00016 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 CP017854_00017 - 140 2.6e-25 88.5 0.1 1 1 1.9e-29 3.5e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 CP017854_00018 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP017854_00018 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP017854_00018 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP017854_00018 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP017854_00018 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP017854_00018 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP017854_00018 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 CP017854_00019 - 328 5e-28 98.9 13.9 1 1 2.4e-31 7.2e-28 98.3 13.9 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 CP017854_00019 - 328 0.0042 17.2 1.4 1 3 0.88 2.6e+03 -1.4 0.0 30 53 134 157 122 164 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP017854_00019 - 328 0.0042 17.2 1.4 2 3 5.4e-06 0.016 15.3 0.1 18 82 195 259 188 263 0.92 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP017854_00019 - 328 0.0042 17.2 1.4 3 3 1.2 3.7e+03 -1.9 0.0 62 79 302 319 292 327 0.75 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CP017854_00019 - 328 0.007 17.1 5.8 1 2 0.034 1e+02 3.6 0.5 93 135 105 145 40 182 0.61 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP017854_00019 - 328 0.007 17.1 5.8 2 2 2.3e-06 0.007 17.1 5.8 47 125 219 315 203 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 CP017854_00019 - 328 0.092 13.4 3.4 1 2 1.7 5.1e+03 -1.9 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP017854_00019 - 328 0.092 13.4 3.4 2 2 2.6e-05 0.078 13.6 1.0 32 84 209 270 202 295 0.83 von Willebrand factor type A domain Phage_holin_6_1 PF09682.10 101 CP017854_00019 - 328 0.13 12.7 8.7 1 2 9.1e-05 0.27 11.7 0.3 4 62 77 136 75 154 0.81 Bacteriophage holin of superfamily 6 (Holin_LLH) Phage_holin_6_1 PF09682.10 101 CP017854_00019 - 328 0.13 12.7 8.7 2 2 0.017 51 4.4 2.4 36 90 268 323 251 327 0.83 Bacteriophage holin of superfamily 6 (Holin_LLH) DUF3752 PF12572.8 152 CP017854_00019 - 328 2.8 8.5 8.6 1 2 0.0033 9.9 6.7 0.4 21 49 106 136 98 153 0.70 Protein of unknown function (DUF3752) DUF3752 PF12572.8 152 CP017854_00019 - 328 2.8 8.5 8.6 2 2 0.01 31 5.1 2.6 33 106 233 320 218 328 0.76 Protein of unknown function (DUF3752) TrbL PF04610.14 215 CP017854_00020 - 330 4.7e-29 101.7 31.2 1 2 7.8e-33 4.7e-29 101.7 31.2 1 214 38 250 38 253 0.91 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP017854_00020 - 330 4.7e-29 101.7 31.2 2 2 0.11 6.3e+02 -0.0 0.4 55 88 281 324 242 330 0.42 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP017854_00020 - 330 0.22 11.3 1.3 1 2 0.19 1.2e+03 -0.6 0.1 38 65 68 101 59 114 0.50 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP017854_00020 - 330 0.22 11.3 1.3 2 2 0.00013 0.79 9.6 0.1 30 81 235 286 201 298 0.76 T-cell leukemia translocation-altered AIM3 PF17096.5 88 CP017854_00020 - 330 1.7 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 297 327 290 329 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 CP017854_00021 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CP017854_00021 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 CP017854_00022 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CP017854_00022 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 CP017854_00023 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CP017854_00023 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CP017854_00023 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 CP017854_00024 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP017854_00024 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 CP017854_00025 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP017854_00025 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP017854_00025 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP017854_00025 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP017854_00025 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CP017854_00025 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CP017854_00025 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CP017854_00025 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP017854_00025 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CP017854_00025 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP017854_00025 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP017854_00025 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CP017854_00025 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CP017854_00025 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CP017854_00025 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP017854_00025 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CP017854_00025 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CP017854_00025 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CP017854_00025 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CP017854_00025 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CP017854_00025 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP017854_00025 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CP017854_00025 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP017854_00025 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP017854_00025 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CP017854_00025 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CP017854_00025 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 CP017854_00025 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP017854_00025 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP017854_00025 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CP017854_00025 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 CP017854_00025 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 CP017854_00026 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP017854_00026 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP017854_00026 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP017854_00026 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CP017854_00026 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 CP017854_00027 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 CP017854_00027 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 CP017854_00027 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CP017854_00027 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CP017854_00027 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 CP017854_00028 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 CP017854_00029 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 CP017854_00029 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 CP017854_00029 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 CP017854_00029 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP017854_00029 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP017854_00029 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 CP017854_00031 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP017854_00031 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 CP017854_00032 - 676 9.9e-97 324.5 8.2 1 1 4.5e-100 1.4e-96 324.1 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP017854_00032 - 676 1.4e-12 47.7 0.4 1 2 3.1e-15 9.1e-12 45.1 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP017854_00032 - 676 1.4e-12 47.7 0.4 2 2 1.2 3.7e+03 -1.8 0.1 38 55 537 555 487 569 0.63 Toprim domain zinc_ribbon_9 PF14369.6 35 CP017854_00032 - 676 0.05 13.9 0.7 1 2 2.9 8.5e+03 -2.9 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP017854_00032 - 676 0.05 13.9 0.7 2 2 2.7e-05 0.079 13.2 0.0 18 35 624 641 614 641 0.76 zinc-ribbon zf-C4_Topoisom PF01396.19 39 CP017854_00032 - 676 0.057 13.2 2.4 1 1 5.4e-05 0.16 11.8 2.4 2 27 628 656 627 665 0.89 Topoisomerase DNA binding C4 zinc finger EF-hand_8 PF13833.6 55 CP017854_00032 - 676 0.077 12.9 0.0 1 1 9.3e-05 0.28 11.1 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 CP017854_00032 - 676 0.27 11.4 2.9 1 3 0.59 1.8e+03 -0.8 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP017854_00032 - 676 0.27 11.4 2.9 2 3 1.6 4.9e+03 -2.2 0.1 46 63 472 489 470 493 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP017854_00032 - 676 0.27 11.4 2.9 3 3 0.00026 0.78 10.0 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain PcfJ PF14284.6 144 CP017854_00033 - 473 5.1e-05 23.2 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP017854_00033 - 473 0.02 14.8 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 CP017854_00035 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP017854_00035 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP017854_00035 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP017854_00035 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP017854_00035 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP017854_00035 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP017854_00035 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP017854_00035 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP017854_00035 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP017854_00035 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family Sgf11 PF08209.11 33 CP017854_00036 - 91 0.11 12.1 0.8 1 1 1.3e-05 0.23 11.1 0.8 4 13 74 83 72 85 0.90 Sgf11 (transcriptional regulation protein) CtsR_C PF17727.1 72 CP017854_00037 - 101 0.031 14.4 0.2 1 2 0.00036 3.2 7.9 0.0 3 37 6 40 3 47 0.86 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP017854_00037 - 101 0.031 14.4 0.2 2 2 0.003 27 5.0 0.0 28 48 49 69 45 85 0.85 CtsR C-terminal dimerization domain Lip_prot_lig_C PF10437.9 85 CP017854_00037 - 101 0.049 13.6 2.7 1 2 0.05 4.5e+02 0.9 0.0 59 83 4 26 2 29 0.71 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 CP017854_00037 - 101 0.049 13.6 2.7 2 2 1.9e-05 0.17 11.9 2.2 3 83 15 98 13 99 0.76 Bacterial lipoate protein ligase C-terminus LysE PF01810.18 193 CP017854_00038 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 CP017854_00038 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP017854_00038 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 CP017854_00038 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 CP017854_00038 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 CP017854_00038 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 CP017854_00038 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 CP017854_00038 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 CP017854_00038 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP017854_00038 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP017854_00038 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 CP017854_00038 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 CP017854_00039 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP017854_00039 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP017854_00039 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP017854_00039 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP017854_00039 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP017854_00039 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 CP017854_00040 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP017854_00040 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 CP017854_00041 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP017854_00041 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP017854_00041 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP017854_00041 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP017854_00041 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP017854_00041 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 CP017854_00042 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 CP017854_00043 - 1937 2.2e-16 59.5 2.2 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP017854_00043 - 1937 2.2e-16 59.5 2.2 2 3 0.71 2.5e+03 -3.2 0.0 245 283 1469 1512 1462 1527 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP017854_00043 - 1937 2.2e-16 59.5 2.2 3 3 0.2 7.1e+02 -1.3 0.1 169 209 1876 1924 1845 1925 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 CP017854_00043 - 1937 5e-08 33.1 8.3 1 3 2.3 8.1e+03 -3.4 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP017854_00043 - 1937 5e-08 33.1 8.3 2 3 1.4e-11 5e-08 33.1 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP017854_00043 - 1937 5e-08 33.1 8.3 3 3 0.46 1.6e+03 -1.1 5.7 36 121 1801 1904 1747 1933 0.56 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP017854_00043 - 1937 9.5e-07 29.2 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP017854_00043 - 1937 9.5e-07 29.2 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1466 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP017854_00043 - 1937 1.1e-05 25.3 2.2 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 CP017854_00043 - 1937 1.1e-05 25.3 2.2 2 2 0.1 3.7e+02 0.8 0.1 119 150 1883 1916 1832 1933 0.69 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP017854_00043 - 1937 3.1e-05 24.4 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP017854_00043 - 1937 3.1e-05 24.4 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase DUF3800 PF12686.7 120 CP017854_00044 - 263 6e-06 26.9 8.9 1 2 1e-09 6e-06 26.9 8.9 3 117 6 188 4 192 0.61 Protein of unknown function (DUF3800) DUF3800 PF12686.7 120 CP017854_00044 - 263 6e-06 26.9 8.9 2 2 0.36 2.2e+03 -0.7 1.1 45 63 208 236 189 256 0.56 Protein of unknown function (DUF3800) CM_2 PF01817.21 75 CP017854_00044 - 263 0.032 14.6 0.2 1 1 1.4e-05 0.082 13.3 0.2 20 75 35 95 30 95 0.84 Chorismate mutase type II Myb_DNA-bind_3 PF12776.7 96 CP017854_00044 - 263 2 9.5 5.3 1 2 0.13 7.6e+02 1.2 0.4 49 63 103 117 57 143 0.71 Myb/SANT-like DNA-binding domain Myb_DNA-bind_3 PF12776.7 96 CP017854_00044 - 263 2 9.5 5.3 2 2 0.00026 1.6 9.8 0.4 12 72 187 245 179 251 0.85 Myb/SANT-like DNA-binding domain Relaxase PF03432.14 242 CP017854_00045 - 462 3.6e-10 39.9 7.2 1 2 2e-14 3.6e-10 39.9 7.2 49 229 120 297 70 310 0.73 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP017854_00045 - 462 3.6e-10 39.9 7.2 2 2 0.018 3.3e+02 0.7 6.4 119 183 326 395 318 426 0.69 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 CP017854_00046 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP017854_00046 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP017854_00046 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP017854_00046 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP017854_00046 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP017854_00046 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP017854_00046 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 CP017854_00046 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP017854_00046 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 CP017854_00046 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP017854_00046 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 CP017854_00047 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 CP017854_00047 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP017854_00047 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 CP017854_00047 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 CP017854_00047 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide GTP_EFTU PF00009.27 194 CP017857_00001 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP017857_00001 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP017857_00001 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP017857_00001 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP017857_00001 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP017857_00001 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP017857_00001 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP017857_00001 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP017857_00001 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP017857_00001 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family Sgf11 PF08209.11 33 CP017857_00002 - 91 0.11 12.1 0.8 1 1 1.3e-05 0.23 11.1 0.8 4 13 74 83 72 85 0.90 Sgf11 (transcriptional regulation protein) CtsR_C PF17727.1 72 CP017857_00003 - 101 0.031 14.4 0.2 1 2 0.00036 3.2 7.9 0.0 3 37 6 40 3 47 0.86 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP017857_00003 - 101 0.031 14.4 0.2 2 2 0.003 27 5.0 0.0 28 48 49 69 45 85 0.85 CtsR C-terminal dimerization domain Lip_prot_lig_C PF10437.9 85 CP017857_00003 - 101 0.049 13.6 2.7 1 2 0.05 4.5e+02 0.9 0.0 59 83 4 26 2 29 0.71 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 CP017857_00003 - 101 0.049 13.6 2.7 2 2 1.9e-05 0.17 11.9 2.2 3 83 15 98 13 99 0.76 Bacterial lipoate protein ligase C-terminus LysE PF01810.18 193 CP017857_00004 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 CP017857_00004 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP017857_00004 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 CP017857_00004 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 CP017857_00004 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 CP017857_00004 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 CP017857_00004 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 CP017857_00004 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 CP017857_00004 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP017857_00004 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP017857_00004 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 CP017857_00004 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 CP017857_00005 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP017857_00005 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP017857_00005 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP017857_00005 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP017857_00005 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP017857_00005 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 CP017857_00006 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP017857_00006 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 CP017857_00007 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP017857_00007 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP017857_00007 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP017857_00007 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP017857_00007 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP017857_00007 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 CP017857_00008 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 CP017857_00009 - 1937 2.2e-16 59.5 2.2 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP017857_00009 - 1937 2.2e-16 59.5 2.2 2 3 0.71 2.5e+03 -3.2 0.0 245 283 1469 1512 1462 1527 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP017857_00009 - 1937 2.2e-16 59.5 2.2 3 3 0.2 7.1e+02 -1.3 0.1 169 209 1876 1924 1845 1925 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 CP017857_00009 - 1937 5e-08 33.1 8.3 1 3 2.3 8.1e+03 -3.4 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP017857_00009 - 1937 5e-08 33.1 8.3 2 3 1.4e-11 5e-08 33.1 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP017857_00009 - 1937 5e-08 33.1 8.3 3 3 0.46 1.6e+03 -1.1 5.7 36 121 1801 1904 1747 1933 0.56 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP017857_00009 - 1937 9.5e-07 29.2 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP017857_00009 - 1937 9.5e-07 29.2 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1466 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP017857_00009 - 1937 1.1e-05 25.3 2.2 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 CP017857_00009 - 1937 1.1e-05 25.3 2.2 2 2 0.1 3.7e+02 0.8 0.1 119 150 1883 1916 1832 1933 0.69 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP017857_00009 - 1937 3.1e-05 24.4 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP017857_00009 - 1937 3.1e-05 24.4 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase DUF3800 PF12686.7 120 CP017857_00010 - 263 6e-06 26.9 8.9 1 2 1e-09 6e-06 26.9 8.9 3 117 6 188 4 192 0.61 Protein of unknown function (DUF3800) DUF3800 PF12686.7 120 CP017857_00010 - 263 6e-06 26.9 8.9 2 2 0.36 2.2e+03 -0.7 1.1 45 63 208 236 189 256 0.56 Protein of unknown function (DUF3800) CM_2 PF01817.21 75 CP017857_00010 - 263 0.032 14.6 0.2 1 1 1.4e-05 0.082 13.3 0.2 20 75 35 95 30 95 0.84 Chorismate mutase type II Myb_DNA-bind_3 PF12776.7 96 CP017857_00010 - 263 2 9.5 5.3 1 2 0.13 7.6e+02 1.2 0.4 49 63 103 117 57 143 0.71 Myb/SANT-like DNA-binding domain Myb_DNA-bind_3 PF12776.7 96 CP017857_00010 - 263 2 9.5 5.3 2 2 0.00026 1.6 9.8 0.4 12 72 187 245 179 251 0.85 Myb/SANT-like DNA-binding domain Relaxase PF03432.14 242 CP017857_00011 - 462 3.6e-10 39.9 7.2 1 2 2e-14 3.6e-10 39.9 7.2 49 229 120 297 70 310 0.73 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP017857_00011 - 462 3.6e-10 39.9 7.2 2 2 0.018 3.3e+02 0.7 6.4 119 183 326 395 318 426 0.69 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 CP017857_00012 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP017857_00012 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP017857_00012 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP017857_00012 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP017857_00012 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP017857_00012 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP017857_00012 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 CP017857_00012 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP017857_00012 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 CP017857_00012 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP017857_00012 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 CP017857_00013 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 CP017857_00013 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP017857_00013 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 CP017857_00013 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 CP017857_00013 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 CP017857_00016 - 409 1.6e-08 34.8 0.2 1 2 1.1 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 CP017857_00016 - 409 1.6e-08 34.8 0.2 2 2 7.1e-12 4.3e-08 33.4 0.0 3 94 271 376 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 CP017857_00016 - 409 0.016 15.4 0.1 1 2 0.018 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 CP017857_00016 - 409 0.016 15.4 0.1 2 2 0.00022 1.3 9.3 0.0 15 83 283 359 277 369 0.80 Retrotransposon gag protein DUF2315 PF10231.9 123 CP017857_00016 - 409 0.017 15.2 6.4 1 3 0.00021 1.2 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP017857_00016 - 409 0.017 15.2 6.4 2 3 0.0012 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP017857_00016 - 409 0.017 15.2 6.4 3 3 0.93 5.5e+03 -2.6 0.0 21 91 356 374 339 385 0.55 Apoptogenic protein 1 DUF4223 PF13978.6 54 CP017857_00017 - 92 0.0072 16.3 0.0 1 1 1.5e-06 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) STI1 PF17830.1 55 CP017857_00017 - 92 0.15 12.0 0.0 1 1 4e-05 0.36 10.8 0.0 9 39 22 56 16 59 0.84 STI1 domain TOPRIM_C PF16898.5 128 CP017857_00018 - 69 0.029 14.7 1.5 1 1 1.7e-06 0.031 14.6 1.5 63 124 8 68 2 69 0.88 C-terminal associated domain of TOPRIM Pkinase PF00069.25 264 CP017857_00019 - 336 5.1e-29 101.4 6.3 1 1 4.2e-32 9.5e-29 100.6 6.3 5 153 156 304 153 315 0.90 Protein kinase domain Pkinase_Tyr PF07714.17 259 CP017857_00019 - 336 2e-26 92.8 0.9 1 1 1.4e-29 3.2e-26 92.2 0.9 6 158 157 303 154 315 0.88 Protein tyrosine kinase Pkinase_fungal PF17667.1 408 CP017857_00019 - 336 4e-06 25.9 0.8 1 1 2.6e-09 5.9e-06 25.3 0.8 314 364 254 301 238 318 0.78 Fungal protein kinase DUF2841 PF11001.8 124 CP017857_00019 - 336 0.0032 17.5 0.9 1 2 2.6 5.9e+03 -2.7 0.0 10 56 22 69 17 75 0.60 Protein of unknown function (DUF2841) DUF2841 PF11001.8 124 CP017857_00019 - 336 0.0032 17.5 0.9 2 2 3.9e-06 0.0087 16.1 0.7 15 88 179 263 162 323 0.71 Protein of unknown function (DUF2841) RIO1 PF01163.22 188 CP017857_00019 - 336 0.0073 15.9 2.5 1 2 2 4.5e+03 -3.0 0.0 20 34 46 60 37 78 0.60 RIO1 family RIO1 PF01163.22 188 CP017857_00019 - 336 0.0073 15.9 2.5 2 2 3.3e-06 0.0073 15.9 2.5 25 150 167 291 151 302 0.74 RIO1 family ORC6 PF05460.13 357 CP017857_00019 - 336 0.0086 15.4 0.2 1 1 5.4e-06 0.012 14.9 0.2 192 282 163 254 116 268 0.78 Origin recognition complex subunit 6 (ORC6) Pectate_lyase_3 PF12708.7 215 CP017857_00019 - 336 0.068 13.0 0.4 1 1 6e-05 0.14 12.0 0.4 49 199 148 324 143 333 0.59 Pectate lyase superfamily protein Pex19 PF04614.12 244 CP017857_00019 - 336 3.6 7.3 5.4 1 1 0.0033 7.5 6.2 5.4 152 207 172 228 168 231 0.87 Pex19 protein family HicB_lk_antitox PF15919.5 123 CP017857_00021 - 72 3.6e-09 36.8 0.0 1 1 4.2e-13 3.8e-09 36.7 0.0 3 60 5 61 3 71 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 CP017857_00021 - 72 0.065 12.6 0.0 1 1 7.9e-06 0.071 12.5 0.0 12 60 21 69 15 72 0.92 IRSp53/MIM homology domain AAA_25 PF13481.6 194 CP017857_00022 - 597 1.8e-15 57.0 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 CP017857_00022 - 597 0.00087 18.7 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP017857_00022 - 597 0.00087 18.7 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP017857_00022 - 597 0.0012 18.6 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP017857_00022 - 597 0.0012 18.6 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 CP017857_00022 - 597 0.0035 17.1 0.0 1 1 2.5e-06 0.0073 16.0 0.0 5 122 36 172 32 207 0.72 AAA domain ATPase PF06745.13 231 CP017857_00022 - 597 0.011 15.1 0.1 1 2 2.1e-05 0.064 12.6 0.0 16 70 30 83 26 214 0.87 KaiC ATPase PF06745.13 231 CP017857_00022 - 597 0.011 15.1 0.1 2 2 0.51 1.5e+03 -1.7 0.0 137 160 329 352 321 358 0.83 KaiC CbiA PF01656.23 128 CP017857_00022 - 597 0.18 11.9 0.9 1 1 0.00018 0.53 10.4 1.0 1 29 35 63 35 537 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain GBR_NSP5 PF17580.2 176 CP017857_00023 - 150 0.013 15.3 0.4 1 1 1.3e-06 0.024 14.5 0.4 17 64 43 90 26 97 0.78 Group B Rotavirus Non-structural protein 5 Resolvase PF00239.21 146 CP017857_00025 - 204 1.6e-33 115.9 0.7 1 1 4.7e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP017857_00025 - 204 0.024 14.4 0.8 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP017857_00025 - 204 0.024 14.4 0.8 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 CP017857_00025 - 204 0.024 14.4 0.8 3 3 0.01 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP017857_00025 - 204 0.028 14.5 4.9 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP017857_00025 - 204 0.028 14.5 4.9 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP017857_00025 - 204 0.028 14.5 4.9 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 CP017857_00025 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP017857_00025 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP017857_00025 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 CP017857_00026 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP017857_00026 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 CP017857_00026 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 CP017857_00028 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP017857_00028 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 CP017857_00029 - 922 1.3e-51 175.6 0.7 1 1 5e-55 3e-51 174.5 0.7 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP017857_00029 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 CP017857_00029 - 922 0.045 13.2 0.1 1 1 1.6e-05 0.096 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 CP017857_00030 - 185 1e-28 99.7 0.0 1 1 1.8e-32 1.6e-28 99.1 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 CP017857_00030 - 185 0.00048 20.2 0.0 1 1 1.1e-07 0.001 19.1 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) DUF3251 PF11622.8 165 CP017857_00031 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 CP017857_00031 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 CP017857_00031 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 CP017857_00031 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP017857_00031 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP017857_00031 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 CP017857_00031 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP017857_00031 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP017857_00031 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 CP017857_00031 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 CP017857_00031 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 CP017857_00031 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP017857_00031 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP017857_00031 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 CP017857_00032 - 140 2.6e-25 88.5 0.1 1 1 1.9e-29 3.5e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 CP017857_00033 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP017857_00033 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP017857_00033 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP017857_00033 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP017857_00033 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP017857_00033 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP017857_00033 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 CP017857_00034 - 328 5e-28 98.9 13.9 1 1 2.4e-31 7.2e-28 98.3 13.9 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 CP017857_00034 - 328 0.0042 17.2 1.4 1 3 0.88 2.6e+03 -1.4 0.0 30 53 134 157 122 164 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP017857_00034 - 328 0.0042 17.2 1.4 2 3 5.4e-06 0.016 15.3 0.1 18 82 195 259 188 263 0.92 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP017857_00034 - 328 0.0042 17.2 1.4 3 3 1.2 3.7e+03 -1.9 0.0 62 79 302 319 292 327 0.75 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CP017857_00034 - 328 0.007 17.1 5.8 1 2 0.034 1e+02 3.6 0.5 93 135 105 145 40 182 0.61 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP017857_00034 - 328 0.007 17.1 5.8 2 2 2.3e-06 0.007 17.1 5.8 47 125 219 315 203 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 CP017857_00034 - 328 0.092 13.4 3.4 1 2 1.7 5.1e+03 -1.9 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP017857_00034 - 328 0.092 13.4 3.4 2 2 2.6e-05 0.078 13.6 1.0 32 84 209 270 202 295 0.83 von Willebrand factor type A domain Phage_holin_6_1 PF09682.10 101 CP017857_00034 - 328 0.13 12.7 8.7 1 2 9.1e-05 0.27 11.7 0.3 4 62 77 136 75 154 0.81 Bacteriophage holin of superfamily 6 (Holin_LLH) Phage_holin_6_1 PF09682.10 101 CP017857_00034 - 328 0.13 12.7 8.7 2 2 0.017 51 4.4 2.4 36 90 268 323 251 327 0.83 Bacteriophage holin of superfamily 6 (Holin_LLH) DUF3752 PF12572.8 152 CP017857_00034 - 328 2.8 8.5 8.6 1 2 0.0033 9.9 6.7 0.4 21 49 106 136 98 153 0.70 Protein of unknown function (DUF3752) DUF3752 PF12572.8 152 CP017857_00034 - 328 2.8 8.5 8.6 2 2 0.01 31 5.1 2.6 33 106 233 320 218 328 0.76 Protein of unknown function (DUF3752) TrbL PF04610.14 215 CP017857_00035 - 330 4.7e-29 101.7 31.2 1 2 7.8e-33 4.7e-29 101.7 31.2 1 214 38 250 38 253 0.91 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP017857_00035 - 330 4.7e-29 101.7 31.2 2 2 0.11 6.3e+02 -0.0 0.4 55 88 281 324 242 330 0.42 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP017857_00035 - 330 0.22 11.3 1.3 1 2 0.19 1.2e+03 -0.6 0.1 38 65 68 101 59 114 0.50 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP017857_00035 - 330 0.22 11.3 1.3 2 2 0.00013 0.79 9.6 0.1 30 81 235 286 201 298 0.76 T-cell leukemia translocation-altered AIM3 PF17096.5 88 CP017857_00035 - 330 1.7 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 297 327 290 329 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 CP017857_00036 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CP017857_00036 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 CP017857_00037 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CP017857_00037 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 CP017857_00038 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CP017857_00038 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CP017857_00038 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 CP017857_00039 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP017857_00039 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 CP017857_00040 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP017857_00040 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP017857_00040 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP017857_00040 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP017857_00040 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CP017857_00040 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CP017857_00040 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CP017857_00040 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP017857_00040 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CP017857_00040 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP017857_00040 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP017857_00040 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CP017857_00040 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CP017857_00040 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CP017857_00040 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP017857_00040 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CP017857_00040 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CP017857_00040 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CP017857_00040 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CP017857_00040 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CP017857_00040 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP017857_00040 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CP017857_00040 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP017857_00040 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP017857_00040 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CP017857_00040 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CP017857_00040 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 CP017857_00040 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP017857_00040 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP017857_00040 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CP017857_00040 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 CP017857_00040 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 CP017857_00041 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP017857_00041 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP017857_00041 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP017857_00041 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CP017857_00041 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 CP017857_00042 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 CP017857_00042 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 CP017857_00042 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CP017857_00042 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CP017857_00042 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 CP017857_00043 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 CP017857_00044 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 CP017857_00044 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 CP017857_00044 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 CP017857_00044 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP017857_00044 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP017857_00044 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 CP017857_00046 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP017857_00046 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 CP017857_00047 - 676 9.9e-97 324.5 8.2 1 1 4.5e-100 1.4e-96 324.1 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP017857_00047 - 676 1.4e-12 47.7 0.4 1 2 3.1e-15 9.1e-12 45.1 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP017857_00047 - 676 1.4e-12 47.7 0.4 2 2 1.2 3.7e+03 -1.8 0.1 38 55 537 555 487 569 0.63 Toprim domain zinc_ribbon_9 PF14369.6 35 CP017857_00047 - 676 0.05 13.9 0.7 1 2 2.9 8.5e+03 -2.9 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP017857_00047 - 676 0.05 13.9 0.7 2 2 2.7e-05 0.079 13.2 0.0 18 35 624 641 614 641 0.76 zinc-ribbon zf-C4_Topoisom PF01396.19 39 CP017857_00047 - 676 0.057 13.2 2.4 1 1 5.4e-05 0.16 11.8 2.4 2 27 628 656 627 665 0.89 Topoisomerase DNA binding C4 zinc finger EF-hand_8 PF13833.6 55 CP017857_00047 - 676 0.077 12.9 0.0 1 1 9.3e-05 0.28 11.1 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 CP017857_00047 - 676 0.27 11.4 2.9 1 3 0.59 1.8e+03 -0.8 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP017857_00047 - 676 0.27 11.4 2.9 2 3 1.6 4.9e+03 -2.2 0.1 46 63 472 489 470 493 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP017857_00047 - 676 0.27 11.4 2.9 3 3 0.00026 0.78 10.0 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain PcfJ PF14284.6 144 CP017857_00048 - 473 5.1e-05 23.2 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP017857_00048 - 473 0.02 14.8 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain IMS PF00817.20 150 CP018901_00001 - 126 1.1e-06 28.7 0.1 1 1 1.7e-10 3e-06 27.3 0.1 1 80 10 122 10 126 0.71 impB/mucB/samB family DUF4368 PF14287.6 67 CP018901_00002 - 628 3.6e-23 81.6 2.1 1 1 3.2e-26 1.2e-22 80.0 2.1 2 66 472 537 471 538 0.92 Domain of unknown function (DUF4368) Recombinase PF07508.13 104 CP018901_00002 - 628 3.6e-22 78.7 0.7 1 2 2.2 7.8e+03 -2.7 0.0 8 32 133 157 132 173 0.80 Recombinase Recombinase PF07508.13 104 CP018901_00002 - 628 3.6e-22 78.7 0.7 2 2 3.8e-25 1.4e-21 76.9 0.2 1 101 183 303 183 305 0.96 Recombinase Resolvase PF00239.21 146 CP018901_00002 - 628 5.2e-21 75.3 0.1 1 3 1.5e-24 5.2e-21 75.3 0.1 2 146 9 161 8 161 0.90 Resolvase, N terminal domain Resolvase PF00239.21 146 CP018901_00002 - 628 5.2e-21 75.3 0.1 2 3 0.11 4e+02 1.1 2.0 21 62 380 422 373 520 0.78 Resolvase, N terminal domain Resolvase PF00239.21 146 CP018901_00002 - 628 5.2e-21 75.3 0.1 3 3 1 3.6e+03 -2.1 1.6 123 142 579 598 549 602 0.65 Resolvase, N terminal domain Zn_ribbon_recom PF13408.6 58 CP018901_00002 - 628 1.4e-12 47.9 2.6 1 1 1.2e-15 4.3e-12 46.3 2.6 1 58 318 380 318 380 0.84 Recombinase zinc beta ribbon domain Xrn1_D3 PF18194.1 71 CP018901_00002 - 628 0.12 12.5 0.5 1 2 0.00011 0.38 10.9 0.1 2 28 376 402 375 412 0.91 Exoribonuclease 1 Domain-3 Xrn1_D3 PF18194.1 71 CP018901_00002 - 628 0.12 12.5 0.5 2 2 4.2 1.5e+04 -3.8 0.0 33 50 464 481 459 484 0.73 Exoribonuclease 1 Domain-3 TnpV PF14198.6 112 CP018901_00003 - 114 3.3e-41 139.8 0.5 1 1 2e-45 3.6e-41 139.6 0.5 1 112 4 112 4 112 0.99 Transposon-encoded protein TnpV AAA_18 PF13238.6 130 CP018901_00004 - 172 1.2e-14 55.0 0.0 1 1 4e-17 1.5e-14 54.6 0.0 1 122 7 133 7 141 0.78 AAA domain AAA_33 PF13671.6 143 CP018901_00004 - 172 2.4e-11 44.0 0.0 1 1 7.5e-14 2.9e-11 43.7 0.0 2 136 7 144 6 147 0.80 AAA domain CPT PF07931.12 174 CP018901_00004 - 172 2.8e-10 40.3 0.0 1 1 1.4e-12 5.4e-10 39.4 0.0 1 170 4 170 4 172 0.79 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 199 CP018901_00004 - 172 1.5e-07 30.9 0.0 1 1 7.8e-10 3.1e-07 29.9 0.0 18 160 6 138 2 169 0.77 Zeta toxin AAA_28 PF13521.6 163 CP018901_00004 - 172 3.6e-06 27.3 0.2 1 2 2.5e-08 9.9e-06 25.9 0.0 2 65 7 74 6 86 0.73 AAA domain AAA_28 PF13521.6 163 CP018901_00004 - 172 3.6e-06 27.3 0.2 2 2 4.3 1.7e+03 -0.9 0.0 34 127 99 125 88 159 0.52 AAA domain AAA PF00004.29 132 CP018901_00004 - 172 8.3e-06 26.3 0.0 1 2 1.3e-07 5.1e-05 23.7 0.0 2 25 8 31 7 83 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP018901_00004 - 172 8.3e-06 26.3 0.0 2 2 1.8 6.9e+02 0.6 0.0 112 131 116 135 96 168 0.67 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 136 CP018901_00004 - 172 8.6e-06 26.2 0.0 1 1 8.7e-08 3.4e-05 24.3 0.0 1 128 10 131 10 138 0.76 AAA domain AAA_22 PF13401.6 137 CP018901_00004 - 172 1.5e-05 25.3 0.0 1 2 1.4e-07 5.4e-05 23.5 0.0 4 43 3 42 1 88 0.83 AAA domain AAA_22 PF13401.6 137 CP018901_00004 - 172 1.5e-05 25.3 0.0 2 2 3.3 1.3e+03 -0.4 0.0 61 97 120 155 91 162 0.70 AAA domain AAA_14 PF13173.6 131 CP018901_00004 - 172 5.9e-05 23.1 0.0 1 1 2.1e-07 8e-05 22.7 0.0 2 123 4 137 3 145 0.74 AAA domain AAA_16 PF13191.6 170 CP018901_00004 - 172 0.00029 21.2 0.0 1 1 9.3e-07 0.00036 21.0 0.0 22 61 2 42 1 134 0.81 AAA ATPase domain DUF2075 PF09848.9 363 CP018901_00004 - 172 0.00097 18.5 0.3 1 1 2.9e-06 0.0011 18.2 0.3 2 27 5 32 4 146 0.89 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 146 CP018901_00004 - 172 0.0016 18.8 0.0 1 1 8.4e-06 0.0033 17.8 0.0 9 39 3 33 1 49 0.84 AAA domain KTI12 PF08433.10 272 CP018901_00004 - 172 0.0016 18.0 0.1 1 2 8.8e-06 0.0034 16.9 0.0 3 42 6 44 5 87 0.76 Chromatin associated protein KTI12 KTI12 PF08433.10 272 CP018901_00004 - 172 0.0016 18.0 0.1 2 2 4.5 1.8e+03 -1.9 0.0 120 122 126 128 100 165 0.54 Chromatin associated protein KTI12 AAA_30 PF13604.6 192 CP018901_00004 - 172 0.0021 17.8 0.1 1 1 8.8e-06 0.0034 17.1 0.1 17 40 3 26 1 40 0.84 AAA domain AAA_24 PF13479.6 197 CP018901_00004 - 172 0.0022 17.8 0.3 1 1 9.1e-06 0.0036 17.1 0.3 3 33 5 40 3 172 0.76 AAA domain ABC_tran PF00005.27 137 CP018901_00004 - 172 0.0025 18.3 0.0 1 1 7.5e-06 0.0029 18.1 0.0 9 51 2 43 1 147 0.82 ABC transporter TIP49 PF06068.13 351 CP018901_00004 - 172 0.0047 16.2 0.3 1 2 4.6e-05 0.018 14.3 0.0 50 75 4 29 1 46 0.81 TIP49 P-loop domain TIP49 PF06068.13 351 CP018901_00004 - 172 0.0047 16.2 0.3 2 2 1.2 4.9e+02 -0.3 0.2 141 182 119 160 99 169 0.71 TIP49 P-loop domain APS_kinase PF01583.20 158 CP018901_00004 - 172 0.0047 16.8 0.0 1 2 0.00023 0.088 12.7 0.0 1 46 3 46 3 95 0.65 Adenylylsulphate kinase APS_kinase PF01583.20 158 CP018901_00004 - 172 0.0047 16.8 0.0 2 2 0.33 1.3e+02 2.4 0.0 45 76 119 150 98 167 0.86 Adenylylsulphate kinase ATPase PF06745.13 231 CP018901_00004 - 172 0.0061 15.9 0.7 1 2 3.8e-05 0.015 14.7 0.1 18 38 3 23 1 39 0.87 KaiC ATPase PF06745.13 231 CP018901_00004 - 172 0.0061 15.9 0.7 2 2 2.3 9e+02 -1.0 0.1 98 120 124 149 100 169 0.47 KaiC T2SSE PF00437.20 273 CP018901_00004 - 172 0.011 14.9 0.0 1 1 3.9e-05 0.015 14.3 0.0 130 154 5 29 1 71 0.87 Type II/IV secretion system protein DnaB_C PF03796.15 255 CP018901_00004 - 172 0.015 14.7 0.5 1 2 0.0002 0.077 12.3 0.0 17 47 2 32 1 41 0.84 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP018901_00004 - 172 0.015 14.7 0.5 2 2 0.77 3e+02 0.5 0.1 49 92 104 144 96 171 0.45 DnaB-like helicase C terminal domain SRP54 PF00448.22 196 CP018901_00004 - 172 0.015 14.9 0.1 1 1 8.6e-05 0.033 13.8 0.0 3 40 6 42 4 46 0.81 SRP54-type protein, GTPase domain ATPase_2 PF01637.18 233 CP018901_00004 - 172 0.015 15.2 0.1 1 2 0.0024 0.93 9.4 0.0 19 54 3 38 1 67 0.80 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 CP018901_00004 - 172 0.015 15.2 0.1 2 2 0.09 35 4.2 0.1 48 93 102 151 95 172 0.61 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 168 CP018901_00004 - 172 0.016 15.1 0.5 1 1 8.1e-05 0.031 14.2 0.2 2 22 7 27 6 37 0.88 NTPase Viral_helicase1 PF01443.18 234 CP018901_00004 - 172 0.016 14.9 0.0 1 1 6.2e-05 0.024 14.4 0.0 1 60 7 75 7 89 0.66 Viral (Superfamily 1) RNA helicase RuvB_N PF05496.12 159 CP018901_00004 - 172 0.018 14.8 0.1 1 2 0.00019 0.073 12.8 0.0 36 59 7 30 3 47 0.86 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 CP018901_00004 - 172 0.018 14.8 0.1 2 2 2.8 1.1e+03 -0.7 0.0 96 139 111 158 102 164 0.58 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 194 CP018901_00004 - 172 0.018 14.6 0.3 1 3 0.00017 0.066 12.8 0.1 32 54 3 25 1 28 0.88 AAA domain AAA_25 PF13481.6 194 CP018901_00004 - 172 0.018 14.6 0.3 2 3 7 2.7e+03 -2.3 0.0 118 174 56 74 30 85 0.48 AAA domain AAA_25 PF13481.6 194 CP018901_00004 - 172 0.018 14.6 0.3 3 3 4.7 1.8e+03 -1.7 0.0 63 89 96 121 92 162 0.53 AAA domain Cytidylate_kin2 PF13189.6 179 CP018901_00004 - 172 0.024 14.8 0.2 1 2 0.036 14 5.7 0.1 1 22 6 27 6 33 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 CP018901_00004 - 172 0.024 14.8 0.2 2 2 0.011 4.2 7.5 0.0 108 147 99 138 41 143 0.88 Cytidylate kinase-like family Rad17 PF03215.15 186 CP018901_00004 - 172 0.03 14.3 0.0 1 2 0.00038 0.15 12.0 0.0 45 69 4 28 1 41 0.87 Rad17 P-loop domain Rad17 PF03215.15 186 CP018901_00004 - 172 0.03 14.3 0.0 2 2 1.9 7.4e+02 -0.1 0.0 113 146 110 145 98 164 0.71 Rad17 P-loop domain Hydin_ADK PF17213.3 198 CP018901_00004 - 172 0.032 14.5 0.7 1 1 0.00013 0.05 13.9 0.2 2 22 7 27 6 31 0.92 Hydin Adenylate kinase-like domain NB-ARC PF00931.22 252 CP018901_00004 - 172 0.037 13.2 0.0 1 1 0.00017 0.065 12.4 0.0 21 47 5 30 1 49 0.84 NB-ARC domain MKT1_N PF12247.8 90 CP018901_00004 - 172 0.04 14.3 0.0 1 1 0.00022 0.084 13.2 0.0 14 52 39 75 35 160 0.90 Temperature dependent protein affecting M2 dsRNA replication ArsA_ATPase PF02374.15 305 CP018901_00004 - 172 0.042 13.0 0.1 1 2 0.00023 0.089 12.0 0.0 2 44 5 46 4 84 0.80 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 CP018901_00004 - 172 0.042 13.0 0.1 2 2 4.6 1.8e+03 -2.2 0.0 265 278 134 147 105 169 0.50 Anion-transporting ATPase NACHT PF05729.12 166 CP018901_00004 - 172 0.045 13.7 0.0 1 1 0.00016 0.064 13.2 0.0 1 31 5 35 5 74 0.75 NACHT domain AAA_11 PF13086.6 261 CP018901_00004 - 172 0.046 13.5 1.0 1 1 0.00017 0.067 13.0 0.9 16 41 3 28 1 164 0.90 AAA domain RNA_helicase PF00910.22 107 CP018901_00004 - 172 0.047 14.1 0.0 1 1 0.00022 0.086 13.2 0.0 1 35 7 42 7 77 0.71 RNA helicase Sigma54_activat PF00158.26 168 CP018901_00004 - 172 0.053 13.2 0.0 1 1 0.00023 0.091 12.5 0.0 25 67 7 56 1 89 0.73 Sigma-54 interaction domain GvpD PF07088.11 484 CP018901_00004 - 172 0.054 12.1 0.3 1 3 0.00096 0.38 9.3 0.0 9 26 3 20 1 39 0.87 GvpD gas vesicle protein GvpD PF07088.11 484 CP018901_00004 - 172 0.054 12.1 0.3 2 3 0.46 1.8e+02 0.5 0.0 31 64 97 129 79 146 0.67 GvpD gas vesicle protein GvpD PF07088.11 484 CP018901_00004 - 172 0.054 12.1 0.3 3 3 1.5 6e+02 -1.2 0.0 363 390 120 147 104 163 0.74 GvpD gas vesicle protein AAA_7 PF12775.7 181 CP018901_00004 - 172 0.056 13.0 0.2 1 2 0.00028 0.11 12.0 0.0 31 64 2 35 1 47 0.83 P-loop containing dynein motor region AAA_7 PF12775.7 181 CP018901_00004 - 172 0.056 13.0 0.2 2 2 5.8 2.2e+03 -2.0 0.0 74 90 116 132 97 166 0.59 P-loop containing dynein motor region IstB_IS21 PF01695.17 178 CP018901_00004 - 172 0.073 12.8 0.1 1 2 0.0004 0.16 11.7 0.0 48 70 5 27 1 47 0.84 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP018901_00004 - 172 0.073 12.8 0.1 2 2 9.2 3.6e+03 -2.5 0.0 133 148 99 114 96 136 0.63 IstB-like ATP binding protein PhoH PF02562.16 205 CP018901_00004 - 172 0.076 12.5 0.1 1 1 0.00043 0.17 11.3 0.1 18 43 3 28 1 36 0.81 PhoH-like protein Ploopntkinase1 PF18748.1 196 CP018901_00004 - 172 0.086 12.4 0.0 1 2 0.22 86 2.6 0.0 16 41 3 29 1 41 0.78 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 CP018901_00004 - 172 0.086 12.4 0.0 2 2 0.005 2 7.9 0.0 93 164 72 143 56 152 0.75 P-loop Nucleotide Kinase1 ATP-synt_ab PF00006.25 213 CP018901_00004 - 172 0.086 12.5 0.0 1 1 0.00024 0.094 12.4 0.0 12 71 2 121 1 140 0.68 ATP synthase alpha/beta family, nucleotide-binding domain IPT PF01745.16 233 CP018901_00004 - 172 0.098 12.0 0.2 1 2 0.00062 0.24 10.7 0.1 3 25 6 28 4 42 0.91 Isopentenyl transferase IPT PF01745.16 233 CP018901_00004 - 172 0.098 12.0 0.2 2 2 3.8 1.5e+03 -1.6 0.0 193 211 126 144 81 156 0.63 Isopentenyl transferase Ploopntkinase3 PF18751.1 185 CP018901_00004 - 172 0.11 12.4 0.4 1 2 0.00095 0.37 10.7 0.0 3 33 4 34 1 49 0.80 P-loop Nucleotide Kinase3 Ploopntkinase3 PF18751.1 185 CP018901_00004 - 172 0.11 12.4 0.4 2 2 4.5 1.7e+03 -1.3 0.0 108 145 101 139 94 155 0.68 P-loop Nucleotide Kinase3 CoaE PF01121.20 179 CP018901_00004 - 172 0.18 11.5 0.7 1 2 0.026 10 5.7 0.1 2 21 6 25 5 31 0.87 Dephospho-CoA kinase CoaE PF01121.20 179 CP018901_00004 - 172 0.18 11.5 0.7 2 2 0.074 29 4.3 0.0 125 149 108 132 95 146 0.82 Dephospho-CoA kinase APH PF01636.23 240 CP018901_00005 - 305 8.6e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 CP018901_00005 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 CP018901_00005 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 CP018901_00005 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 CP018901_00005 - 305 0.09 12.4 0.4 1 1 5.2e-05 0.15 11.6 0.4 68 119 244 294 238 303 0.88 TMEM95 family EcKinase PF02958.20 294 CP018901_00005 - 305 0.098 12.0 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 CP018901_00006 - 139 1.3e-51 175.6 0.1 1 1 8.3e-56 1.5e-51 175.5 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase APH PF01636.23 240 CP018901_00007 - 250 6.8e-11 42.6 0.0 1 1 9.1e-15 8.1e-11 42.3 0.0 34 218 45 220 16 242 0.81 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 CP018901_00007 - 250 0.014 14.6 0.1 1 2 0.00011 1 8.5 0.0 52 94 44 84 11 91 0.72 Fructosamine kinase Fructosamin_kin PF03881.14 288 CP018901_00007 - 250 0.014 14.6 0.1 2 2 0.0019 17 4.5 0.1 184 251 168 237 107 246 0.75 Fructosamine kinase CPT PF07931.12 174 CP018901_00008 - 146 4e-06 26.8 0.0 1 1 1.4e-09 4.9e-06 26.5 0.0 59 172 20 137 11 139 0.78 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 130 CP018901_00008 - 146 9.4e-06 26.2 0.0 1 1 3.2e-09 1.2e-05 25.9 0.0 46 122 15 98 1 106 0.77 AAA domain AAA_33 PF13671.6 143 CP018901_00008 - 146 0.00063 19.9 0.0 1 1 2.2e-07 0.0008 19.6 0.0 55 136 30 109 9 112 0.82 AAA domain MKT1_N PF12247.8 90 CP018901_00008 - 146 0.027 14.8 0.0 1 1 1.7e-05 0.063 13.6 0.0 15 52 5 40 3 131 0.90 Temperature dependent protein affecting M2 dsRNA replication AAA_17 PF13207.6 136 CP018901_00008 - 146 0.14 12.6 0.0 1 1 5.4e-05 0.19 12.1 0.0 55 128 27 96 12 103 0.73 AAA domain DUF3847 PF12958.7 81 CP018901_00009 - 119 1.8e-31 108.1 8.2 1 1 5.7e-35 2.6e-31 107.6 8.2 1 81 6 89 6 89 0.98 Protein of unknown function (DUF3847) CENP-Q PF13094.6 168 CP018901_00009 - 119 0.034 14.3 11.9 1 1 9.8e-06 0.044 14.0 11.9 46 96 5 56 2 115 0.74 CENP-Q, a CENPA-CAD centromere complex subunit TPR_8 PF13181.6 34 CP018901_00009 - 119 0.078 13.2 0.1 1 1 4.4e-05 0.2 12.0 0.1 6 27 20 41 16 48 0.89 Tetratricopeptide repeat PHM7_cyt PF14703.6 176 CP018901_00009 - 119 4.2 7.6 7.2 1 1 0.0015 6.6 6.9 7.2 40 87 3 56 1 111 0.75 Cytosolic domain of 10TM putative phosphate transporter MobA_MobL PF03389.15 222 CP018901_00010 - 183 3.5e-50 170.8 0.0 1 1 2.2e-54 3.9e-50 170.6 0.0 1 133 17 154 17 178 0.95 MobA/MobL family AAA_25 PF13481.6 194 CP018901_00011 - 623 4.9e-30 104.5 0.0 1 1 8.5e-33 8.9e-30 103.7 0.0 11 193 306 475 297 476 0.87 AAA domain Toprim_2 PF13155.6 90 CP018901_00011 - 623 6.6e-18 64.9 0.0 1 2 2.4e-20 2.5e-17 63.1 0.0 1 90 189 278 189 278 0.91 Toprim-like Toprim_2 PF13155.6 90 CP018901_00011 - 623 6.6e-18 64.9 0.0 2 2 4.5 4.7e+03 -1.9 0.1 44 77 393 427 381 441 0.75 Toprim-like DUF3991 PF13154.6 76 CP018901_00011 - 623 3.3e-14 53.0 0.0 1 2 1.6e-16 1.7e-13 50.7 0.0 1 74 112 183 112 185 0.93 Protein of unknown function (DUF3991) DUF3991 PF13154.6 76 CP018901_00011 - 623 3.3e-14 53.0 0.0 2 2 2.8 3e+03 -1.3 0.0 6 19 589 602 587 620 0.71 Protein of unknown function (DUF3991) DnaB_C PF03796.15 255 CP018901_00011 - 623 8.6e-09 35.1 0.0 1 2 0.00037 0.39 10.0 0.0 19 45 329 355 326 366 0.87 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP018901_00011 - 623 8.6e-09 35.1 0.0 2 2 4.7e-08 4.9e-05 22.8 0.0 90 185 385 478 369 490 0.79 DnaB-like helicase C terminal domain Toprim_3 PF13362.6 95 CP018901_00011 - 623 1.8e-08 34.6 0.2 1 2 4.2e-10 4.4e-07 30.2 0.0 2 92 188 281 187 283 0.86 Toprim domain Toprim_3 PF13362.6 95 CP018901_00011 - 623 1.8e-08 34.6 0.2 2 2 0.46 4.8e+02 1.2 0.6 40 85 393 439 381 446 0.77 Toprim domain ATPase PF06745.13 231 CP018901_00011 - 623 7.2e-06 25.5 0.1 1 1 1.9e-07 0.0002 20.8 0.0 16 171 326 478 324 511 0.73 KaiC AAA_22 PF13401.6 137 CP018901_00011 - 623 0.0002 21.6 0.0 1 1 5.5e-07 0.00058 20.2 0.0 6 130 330 470 329 475 0.76 AAA domain NACHT PF05729.12 166 CP018901_00011 - 623 0.0033 17.4 0.0 1 2 1.1 1.1e+03 -0.7 0.0 43 71 6 33 3 43 0.76 NACHT domain NACHT PF05729.12 166 CP018901_00011 - 623 0.0033 17.4 0.0 2 2 2.5e-05 0.027 14.4 0.0 2 28 331 357 330 429 0.89 NACHT domain Toprim_4 PF13662.6 89 CP018901_00011 - 623 0.0078 16.7 0.0 1 1 2.5e-05 0.026 15.0 0.0 47 88 227 267 212 268 0.81 Toprim domain AAA_5 PF07728.14 138 CP018901_00011 - 623 0.018 15.0 0.0 1 1 6e-05 0.063 13.3 0.0 3 26 333 357 332 406 0.82 AAA domain (dynein-related subfamily) Rad51 PF08423.11 255 CP018901_00011 - 623 0.05 12.8 0.0 1 1 0.00051 0.54 9.5 0.0 34 190 326 475 324 494 0.69 Rad51 Toprim PF01751.22 103 CP018901_00011 - 623 0.051 13.8 0.0 1 1 0.00011 0.12 12.7 0.0 51 87 222 258 204 269 0.85 Toprim domain AAA_11 PF13086.6 261 CP018901_00011 - 623 0.065 13.0 0.0 1 2 0.24 2.6e+02 1.2 0.0 50 97 230 271 208 294 0.80 AAA domain AAA_11 PF13086.6 261 CP018901_00011 - 623 0.065 13.0 0.0 2 2 0.00095 1 9.1 0.0 18 43 330 355 320 400 0.76 AAA domain RNA_helicase PF00910.22 107 CP018901_00011 - 623 0.13 12.7 0.0 1 2 2.6 2.8e+03 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 CP018901_00011 - 623 0.13 12.7 0.0 2 2 0.00069 0.73 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase PhoH PF02562.16 205 CP018901_00011 - 623 0.17 11.3 0.0 1 1 0.00034 0.36 10.3 0.0 20 47 330 357 322 362 0.88 PhoH-like protein zf-CHC2 PF01807.20 98 CP018901_00011 - 623 0.18 11.7 0.0 1 1 0.00035 0.37 10.6 0.0 44 88 40 82 8 90 0.84 CHC2 zinc finger DUF2075 PF09848.9 363 CP018901_00011 - 623 0.2 10.8 0.0 1 1 0.00031 0.33 10.2 0.0 2 26 330 354 329 398 0.89 Uncharacterized conserved protein (DUF2075) IMS_C PF11799.8 118 CP018901_00012 - 236 1.1e-12 48.7 0.0 1 1 2.1e-16 1.9e-12 48.0 0.0 8 111 94 221 90 226 0.91 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 32 CP018901_00012 - 236 0.00028 21.0 0.1 1 1 7.5e-08 0.00067 19.8 0.1 6 32 19 46 16 46 0.92 IMS family HHH motif DUF447 PF04289.12 176 CP018901_00014 - 130 0.029 14.2 0.1 1 1 7.3e-06 0.044 13.6 0.1 42 111 21 87 19 97 0.84 Protein of unknown function (DUF447) WH1 PF00568.23 111 CP018901_00014 - 130 0.032 14.1 0.3 1 1 8.2e-06 0.049 13.6 0.2 10 80 29 98 20 108 0.85 WH1 domain Cob_adeno_trans PF01923.18 164 CP018901_00014 - 130 0.04 14.0 0.1 1 1 9.1e-06 0.054 13.6 0.1 26 104 38 127 34 130 0.78 Cobalamin adenosyltransferase DUF3825 PF12873.7 239 CP018901_00015 - 335 4.2e-29 101.7 0.3 1 1 3.7e-33 6.7e-29 101.0 0.3 1 239 106 330 106 330 0.86 Domain of unknown function (DUF3825) SGT1 PF07093.11 583 CP018901_00017 - 50 0.046 12.2 2.7 1 1 7.5e-06 0.045 12.2 2.7 511 553 7 49 1 50 0.79 SGT1 protein PG_binding_4 PF12229.8 114 CP018901_00017 - 50 0.057 13.7 1.0 1 1 1.1e-05 0.065 13.5 1.0 42 79 10 48 2 50 0.81 Putative peptidoglycan binding domain DUF2175 PF09943.9 98 CP018901_00017 - 50 0.077 13.3 1.2 1 1 1.4e-05 0.082 13.2 1.2 60 89 9 38 2 47 0.83 Uncharacterized protein conserved in archaea (DUF2175) DUF5309 PF17236.2 280 CP018901_00018 - 81 3.1e-05 23.5 0.5 1 1 1.8e-09 3.3e-05 23.4 0.5 4 53 24 74 21 81 0.82 Family of unknown function (DUF5309) HicA_toxin PF07927.12 58 CP018901_00019 - 75 1.7e-06 28.0 0.0 1 1 1.4e-10 2.5e-06 27.4 0.0 5 55 24 71 20 72 0.88 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 CP018901_00020 - 119 8.3e-09 35.6 0.3 1 2 4.2e-06 0.038 14.1 0.0 1 60 12 74 12 79 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 CP018901_00020 - 119 8.3e-09 35.6 0.3 2 2 3.9e-08 0.00035 20.7 0.1 88 123 77 108 72 108 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 CP018901_00020 - 119 0.15 11.9 0.0 1 1 3.3e-05 0.29 11.0 0.0 3 35 80 112 79 115 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 ParE_toxin PF05016.15 90 CP018901_00022 - 93 1.1e-07 32.4 0.1 1 1 6.6e-12 1.2e-07 32.3 0.1 4 82 6 85 3 89 0.87 ParE toxin of type II toxin-antitoxin system, parDE YafQ_toxin PF15738.5 88 CP018901_00024 - 91 8.9e-29 99.7 1.1 1 1 5.4e-33 9.7e-29 99.5 1.1 2 88 3 89 2 89 0.98 Bacterial toxin of type II toxin-antitoxin system, YafQ DUF4131 PF13567.6 167 CP018901_00025 - 106 0.0008 19.1 0.1 1 1 2.8e-07 0.001 18.8 0.1 3 83 19 97 17 100 0.70 Domain of unknown function (DUF4131) DUF981 PF06168.11 187 CP018901_00025 - 106 0.015 15.2 3.3 1 1 5.2e-06 0.019 14.9 3.3 119 175 9 66 4 73 0.87 Protein of unknown function (DUF981) Wzy_C PF04932.15 155 CP018901_00025 - 106 0.056 13.1 1.3 1 1 1.8e-05 0.064 12.9 1.3 19 65 24 71 19 96 0.81 O-Antigen ligase DUF2663 PF10864.8 127 CP018901_00025 - 106 0.13 12.7 2.1 1 1 4.5e-05 0.16 12.4 2.1 8 80 9 81 2 86 0.58 Protein of unknown function (DUF2663) DUF2721 PF11026.8 129 CP018901_00025 - 106 0.27 11.1 5.3 1 1 9.5e-05 0.34 10.8 5.3 59 118 12 66 3 69 0.85 Protein of unknown function (DUF2721) TraG_N PF07916.11 467 CP018901_00026 - 900 8.5e-39 133.7 20.1 1 4 4.8e-43 8.5e-39 133.7 20.1 38 465 23 446 1 452 0.77 TraG-like protein, N-terminal region TraG_N PF07916.11 467 CP018901_00026 - 900 8.5e-39 133.7 20.1 2 4 0.093 1.7e+03 -2.5 0.9 267 318 538 590 504 606 0.53 TraG-like protein, N-terminal region TraG_N PF07916.11 467 CP018901_00026 - 900 8.5e-39 133.7 20.1 3 4 0.15 2.7e+03 -3.1 3.1 246 307 686 745 646 776 0.48 TraG-like protein, N-terminal region TraG_N PF07916.11 467 CP018901_00026 - 900 8.5e-39 133.7 20.1 4 4 0.66 1.2e+04 -5.3 6.2 229 319 809 885 798 899 0.45 TraG-like protein, N-terminal region Glyco_tranf_2_5 PF13712.6 210 CP018901_00027 - 267 0.00068 19.4 3.8 1 1 7.1e-08 0.0013 18.5 3.8 4 77 114 190 111 198 0.85 Glycosyltransferase like family UvrA_DNA-bind PF17755.1 110 CP018901_00028 - 422 0.00087 19.6 0.5 1 2 1.8e-05 0.32 11.4 0.1 24 65 32 73 19 86 0.82 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 CP018901_00028 - 422 0.00087 19.6 0.5 2 2 0.00078 14 6.1 0.0 15 33 92 109 88 127 0.77 UvrA DNA-binding domain SseC PF04888.12 317 CP018901_00030 - 1310 0.0051 16.5 0.2 1 1 3e-06 0.014 15.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family ThrE PF06738.12 241 CP018901_00030 - 1310 0.014 14.8 0.8 1 1 7.8e-06 0.035 13.5 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter APOBEC_C PF05240.14 78 CP018901_00030 - 1310 0.018 15.0 0.5 1 1 2e-05 0.091 12.7 0.5 26 76 766 819 755 821 0.86 APOBEC-like C-terminal domain Hormone_2 PF00123.20 28 CP018901_00030 - 1310 0.035 14.0 0.1 1 1 3.5e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone Phage_lysozyme PF00959.19 109 CP018901_00032 - 632 1.2e-10 41.8 1.2 1 2 0.95 8.5e+03 -2.8 0.1 17 37 323 343 306 360 0.73 Phage lysozyme Phage_lysozyme PF00959.19 109 CP018901_00032 - 632 1.2e-10 41.8 1.2 2 2 2.2e-14 1.9e-10 41.1 0.1 3 108 521 630 519 631 0.86 Phage lysozyme Vta1 PF04652.16 145 CP018901_00032 - 632 2.2 8.3 10.2 1 4 0.44 4e+03 -2.3 0.1 116 137 148 170 139 173 0.79 Vta1 like Vta1 PF04652.16 145 CP018901_00032 - 632 2.2 8.3 10.2 2 4 0.15 1.4e+03 -0.8 0.2 29 61 317 357 312 369 0.69 Vta1 like Vta1 PF04652.16 145 CP018901_00032 - 632 2.2 8.3 10.2 3 4 6e-06 0.054 13.5 1.0 8 80 392 468 384 481 0.81 Vta1 like Vta1 PF04652.16 145 CP018901_00032 - 632 2.2 8.3 10.2 4 4 0.19 1.7e+03 -1.1 0.0 21 58 464 501 463 516 0.80 Vta1 like DUF2974 PF11187.8 224 CP018901_00033 - 511 1.4e-06 28.0 0.0 1 1 1.5e-09 3.4e-06 26.8 0.0 6 109 79 192 75 260 0.72 Protein of unknown function (DUF2974) Lipase_3 PF01764.25 142 CP018901_00033 - 511 1e-05 25.4 0.0 1 1 2.1e-08 4.6e-05 23.3 0.0 45 107 148 218 108 243 0.78 Lipase (class 3) DUF676 PF05057.14 219 CP018901_00033 - 511 0.0019 17.7 0.0 1 1 2.1e-06 0.0046 16.5 0.0 70 116 158 205 129 247 0.73 Putative serine esterase (DUF676) PGAP1 PF07819.13 231 CP018901_00033 - 511 0.0036 17.0 0.1 1 2 5e-05 0.11 12.2 0.0 69 116 148 193 144 201 0.76 PGAP1-like protein PGAP1 PF07819.13 231 CP018901_00033 - 511 0.0036 17.0 0.1 2 2 0.06 1.4e+02 2.1 0.2 27 83 269 326 247 340 0.76 PGAP1-like protein DUF4450 PF14614.6 217 CP018901_00033 - 511 0.016 14.8 0.2 1 2 2.9 6.5e+03 -3.5 0.0 156 173 340 357 330 359 0.71 Domain of unknown function (DUF4450) DUF4450 PF14614.6 217 CP018901_00033 - 511 0.016 14.8 0.2 2 2 2.1e-05 0.047 13.3 0.1 6 48 446 488 443 495 0.94 Domain of unknown function (DUF4450) UPF0227 PF05728.12 187 CP018901_00033 - 511 0.028 14.4 0.1 1 2 9.1e-05 0.2 11.6 0.0 48 80 157 189 133 196 0.80 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 CP018901_00033 - 511 0.028 14.4 0.1 2 2 0.39 8.7e+02 -0.3 0.0 115 145 391 422 368 439 0.73 Uncharacterised protein family (UPF0227) PAF-AH_p_II PF03403.13 379 CP018901_00033 - 511 0.028 13.0 0.0 1 1 2.2e-05 0.05 12.1 0.0 185 244 120 184 94 210 0.77 Platelet-activating factor acetylhydrolase, isoform II Abhydrolase_6 PF12697.7 220 CP018901_00033 - 511 0.049 14.2 0.0 1 1 3.1e-05 0.069 13.7 0.0 49 86 148 189 103 236 0.62 Alpha/beta hydrolase family DUF2974 PF11187.8 224 CP018901_00034 - 215 0.0024 17.4 0.1 1 2 0.39 2.3e+03 -2.1 0.0 137 159 74 98 58 101 0.68 Protein of unknown function (DUF2974) DUF2974 PF11187.8 224 CP018901_00034 - 215 0.0024 17.4 0.1 2 2 1.2e-06 0.007 16.0 0.0 20 94 131 209 117 211 0.77 Protein of unknown function (DUF2974) DUF676 PF05057.14 219 CP018901_00034 - 215 0.05 13.1 0.0 1 1 1.6e-05 0.096 12.2 0.0 63 91 183 211 143 213 0.73 Putative serine esterase (DUF676) Lipase_3 PF01764.25 142 CP018901_00034 - 215 0.11 12.3 0.1 1 1 7.3e-05 0.44 10.4 0.1 50 75 185 209 159 210 0.80 Lipase (class 3) DUF3810 PF12725.7 310 CP018901_00035 - 212 0.0026 17.2 5.2 1 1 6.4e-07 0.0029 17.0 5.2 20 117 9 106 1 185 0.59 Protein of unknown function (DUF3810) CitMHS PF03600.16 300 CP018901_00035 - 212 0.023 13.9 0.3 1 1 5.2e-06 0.023 13.9 0.3 147 221 4 67 1 158 0.80 Citrate transporter Yip1 PF04893.17 172 CP018901_00035 - 212 0.11 12.2 5.7 1 1 3.5e-05 0.16 11.7 5.7 64 120 6 68 2 76 0.85 Yip1 domain Spo7 PF03907.13 221 CP018901_00035 - 212 1.8 7.9 10.7 1 1 0.0009 4.1 6.8 10.3 33 92 16 70 12 176 0.75 Spo7-like protein Lipase_3 PF01764.25 142 CP018901_00038 - 245 1.5e-08 34.6 0.0 1 1 3.1e-11 5e-08 32.9 0.0 50 113 176 240 139 243 0.77 Lipase (class 3) DUF2974 PF11187.8 224 CP018901_00038 - 245 3.1e-08 33.4 0.0 1 1 3.1e-11 5e-08 32.8 0.0 7 123 100 233 95 236 0.71 Protein of unknown function (DUF2974) DUF676 PF05057.14 219 CP018901_00038 - 245 1.1e-05 25.0 0.1 1 1 1.4e-08 2.3e-05 24.0 0.1 63 117 174 227 168 235 0.71 Putative serine esterase (DUF676) PGAP1 PF07819.13 231 CP018901_00038 - 245 5.6e-05 23.0 0.1 1 1 5.9e-08 9.7e-05 22.2 0.1 46 114 128 213 98 235 0.75 PGAP1-like protein LIDHydrolase PF10230.9 266 CP018901_00038 - 245 0.00041 20.0 0.1 1 1 3.9e-07 0.00064 19.3 0.1 67 101 173 206 133 218 0.72 Lipid-droplet associated hydrolase Abhydrolase_6 PF12697.7 220 CP018901_00038 - 245 0.00064 20.4 0.0 1 1 5.3e-07 0.00086 20.0 0.0 51 86 175 211 138 241 0.75 Alpha/beta hydrolase family UPF0227 PF05728.12 187 CP018901_00038 - 245 0.0014 18.6 0.3 1 2 1.3 2.1e+03 -1.5 0.1 115 148 46 79 32 96 0.58 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 CP018901_00038 - 245 0.0014 18.6 0.3 2 2 2.2e-06 0.0036 17.3 0.0 24 80 154 211 143 227 0.68 Uncharacterised protein family (UPF0227) Palm_thioest PF02089.15 242 CP018901_00038 - 245 0.014 15.3 1.8 1 2 0.44 7.2e+02 -0.2 0.5 152 206 29 91 18 115 0.65 Palmitoyl protein thioesterase Palm_thioest PF02089.15 242 CP018901_00038 - 245 0.014 15.3 1.8 2 2 1.6e-05 0.027 14.3 0.0 30 88 158 212 137 231 0.74 Palmitoyl protein thioesterase NMT PF01233.19 160 CP018901_00038 - 245 0.079 12.8 0.2 1 1 7e-05 0.11 12.3 0.2 28 123 90 188 62 195 0.79 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain Hydrolase_4 PF12146.8 239 CP018901_00038 - 245 0.17 11.2 0.0 1 1 0.00017 0.28 10.4 0.0 65 94 181 208 169 224 0.67 Serine aminopeptidase, S33 Ser_hydrolase PF06821.13 171 CP018901_00038 - 245 0.17 11.7 0.0 1 1 0.00017 0.28 11.0 0.0 6 71 141 206 138 219 0.80 Serine hydrolase Put_DNA-bind_N PF06971.13 49 CP018901_00042 - 155 0.039 14.0 0.0 1 1 7.5e-06 0.067 13.2 0.0 11 34 4 27 3 30 0.94 Putative DNA-binding protein N-terminus ATG27 PF09451.10 264 CP018901_00042 - 155 0.071 13.0 0.6 1 1 1.4e-05 0.12 12.2 0.6 188 227 16 55 7 61 0.79 Autophagy-related protein 27 Toprim_3 PF13362.6 95 CP018901_00044 - 409 2.4e-08 34.2 0.1 1 2 1.4 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 CP018901_00044 - 409 2.4e-08 34.2 0.1 2 2 1.4e-11 6.4e-08 32.9 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 CP018901_00044 - 409 0.017 15.4 0.2 1 2 0.024 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 CP018901_00044 - 409 0.017 15.4 0.2 2 2 0.00027 1.2 9.4 0.0 15 83 283 359 277 382 0.82 Retrotransposon gag protein DUF2315 PF10231.9 123 CP018901_00044 - 409 0.023 14.8 6.8 1 3 0.00028 1.3 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP018901_00044 - 409 0.023 14.8 6.8 2 3 0.0016 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 CP018901_00044 - 409 0.023 14.8 6.8 3 3 1.3 5.9e+03 -2.7 0.0 20 90 355 373 339 384 0.54 Apoptogenic protein 1 5_3_exonuc PF01367.20 97 CP018901_00044 - 409 0.25 12.0 1.7 1 2 0.62 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP018901_00044 - 409 0.25 12.0 1.7 2 2 0.00012 0.53 10.9 0.2 15 81 322 384 321 401 0.72 5'-3' exonuclease, C-terminal SAM fold Abi_2 PF07751.11 179 CP018901_00045 - 225 0.0013 19.1 11.1 1 1 1.1e-07 0.002 18.4 11.1 41 177 29 176 3 178 0.66 Abi-like protein NYN PF01936.18 147 CP018901_00046 - 180 1.7e-10 41.6 0.0 1 1 3.1e-14 1.9e-10 41.4 0.0 60 123 74 146 15 161 0.80 NYN domain Peroxin-22 PF12827.7 113 CP018901_00046 - 180 0.0082 16.0 0.7 1 1 2.7e-06 0.016 15.1 0.7 25 105 81 162 46 169 0.76 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 CP018901_00046 - 180 0.02 15.5 0.0 1 1 5.8e-06 0.035 14.8 0.0 57 103 99 142 77 142 0.88 PIN domain RHH_7 PF16777.5 74 CP018901_00047 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 CP018901_00047 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal AAA_31 PF13614.6 177 CP018901_00048 - 186 6.9e-05 22.8 0.5 1 2 2.1e-07 0.00093 19.2 0.1 3 26 2 25 1 31 0.91 AAA domain AAA_31 PF13614.6 177 CP018901_00048 - 186 6.9e-05 22.8 0.5 2 2 0.04 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 CP018901_00048 - 186 0.001 19.1 0.5 1 1 1.9e-06 0.0086 16.1 0.5 1 55 3 89 3 167 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP018901_00048 - 186 0.014 14.8 0.0 1 1 4.2e-06 0.019 14.4 0.0 17 109 69 171 61 180 0.77 short chain dehydrogenase ParA PF10609.9 246 CP018901_00048 - 186 0.17 11.3 0.0 1 1 5.9e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase DUF4223 PF13978.6 54 CP018901_00049 - 78 0.21 11.6 1.5 1 1 2e-05 0.36 10.8 1.5 1 26 1 27 1 41 0.79 Protein of unknown function (DUF4223) ZapB PF06005.12 71 CP018901_00050 - 32 0.094 13.2 0.1 1 1 5.3e-06 0.095 13.2 0.1 1 22 1 22 1 28 0.94 Cell division protein ZapB DUF1451 PF07295.11 147 CP018901_00051 - 67 0.00056 20.0 0.0 1 1 3.5e-08 0.00063 19.8 0.0 107 137 9 39 2 44 0.88 Zinc-ribbon containing domain DUF4145 PF13643.6 88 CP018901_00052 - 207 8.2e-17 61.1 3.4 1 2 8.1e-20 1.4e-15 57.1 0.1 1 76 87 161 87 172 0.91 Domain of unknown function (DUF4145) DUF4145 PF13643.6 88 CP018901_00052 - 207 8.2e-17 61.1 3.4 2 2 0.0019 34 4.7 0.6 21 52 177 203 161 207 0.77 Domain of unknown function (DUF4145) HicB_lk_antitox PF15919.5 123 CP018901_00054 - 72 1.8e-08 34.5 0.0 1 1 2.3e-12 2e-08 34.4 0.0 3 60 5 61 3 68 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 CP018901_00054 - 72 0.075 12.4 0.0 1 1 9.1e-06 0.082 12.3 0.0 12 61 21 70 15 72 0.94 IRSp53/MIM homology domain HicA_toxin PF07927.12 58 CP018901_00055 - 67 6.2e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 CP018901_00056 - 599 1.7e-15 57.2 0.0 1 1 1.6e-18 3.5e-15 56.1 0.0 30 193 30 175 23 176 0.86 AAA domain DnaB_C PF03796.15 255 CP018901_00056 - 599 0.00066 19.1 0.0 1 2 3.2e-06 0.0072 15.7 0.0 16 109 30 128 25 134 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP018901_00056 - 599 0.00066 19.1 0.0 2 2 0.016 36 3.6 0.0 121 183 112 176 96 180 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP018901_00056 - 599 0.0016 18.2 0.0 1 2 1.1e-05 0.025 14.3 0.0 46 85 32 71 23 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP018901_00056 - 599 0.0016 18.2 0.0 2 2 0.17 3.7e+02 0.7 0.0 96 118 108 130 98 169 0.74 IstB-like ATP binding protein AAA_24 PF13479.6 197 CP018901_00056 - 599 0.0031 17.3 0.0 1 1 2.9e-06 0.0066 16.2 0.0 5 122 36 172 32 206 0.73 AAA domain ATPase PF06745.13 231 CP018901_00056 - 599 0.0057 16.0 0.1 1 2 2e-05 0.044 13.1 0.0 16 71 30 84 25 214 0.73 KaiC ATPase PF06745.13 231 CP018901_00056 - 599 0.0057 16.0 0.1 2 2 0.74 1.7e+03 -1.9 0.0 137 160 329 352 322 358 0.84 KaiC AAA PF00004.29 132 CP018901_00056 - 599 0.07 13.6 0.7 1 3 0.0004 0.9 10.0 0.0 2 105 37 166 36 177 0.58 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP018901_00056 - 599 0.07 13.6 0.7 2 3 0.41 9.1e+02 0.2 0.0 57 74 417 436 383 456 0.76 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP018901_00056 - 599 0.07 13.6 0.7 3 3 4 9e+03 -3.0 0.0 23 49 497 525 477 529 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 CP018901_00056 - 599 0.16 12.0 1.2 1 1 0.00026 0.59 10.2 1.2 1 29 35 63 35 550 0.93 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1947 PF09183.10 66 CP018901_00056 - 599 0.7 10.2 6.3 1 2 0.14 3e+02 1.8 0.2 23 46 245 269 237 271 0.78 Domain of unknown function (DUF1947) DUF1947 PF09183.10 66 CP018901_00056 - 599 0.7 10.2 6.3 2 2 0.00076 1.7 9.0 1.7 7 42 519 552 517 569 0.87 Domain of unknown function (DUF1947) RHH_7 PF16777.5 74 CP018901_00057 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 CP018901_00057 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal AAA_31 PF13614.6 177 CP018901_00058 - 186 6.9e-05 22.8 0.5 1 2 2.1e-07 0.00093 19.2 0.1 3 26 2 25 1 31 0.91 AAA domain AAA_31 PF13614.6 177 CP018901_00058 - 186 6.9e-05 22.8 0.5 2 2 0.04 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 CP018901_00058 - 186 0.001 19.1 0.5 1 1 1.9e-06 0.0086 16.1 0.5 1 55 3 89 3 167 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP018901_00058 - 186 0.014 14.8 0.0 1 1 4.2e-06 0.019 14.4 0.0 17 109 69 171 61 180 0.77 short chain dehydrogenase ParA PF10609.9 246 CP018901_00058 - 186 0.17 11.3 0.0 1 1 5.9e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase DUF4995 PF16386.5 73 CP018901_00059 - 66 0.14 12.2 0.7 1 1 1.7e-05 0.15 12.1 0.7 6 38 8 43 1 65 0.73 Domain of unknown function DUF4223 PF13978.6 54 CP018901_00059 - 66 0.2 11.6 1.9 1 1 3.1e-05 0.28 11.2 1.9 1 26 1 27 1 55 0.84 Protein of unknown function (DUF4223) CitMHS PF03600.16 300 CP018901_00064 - 200 0.0018 17.5 0.1 1 1 6e-07 0.0018 17.5 0.1 147 214 4 101 1 166 0.82 Citrate transporter DUF3810 PF12725.7 310 CP018901_00064 - 200 0.0049 16.3 5.3 1 1 1.9e-06 0.0058 16.0 5.3 19 89 8 80 1 164 0.59 Protein of unknown function (DUF3810) Yip1 PF04893.17 172 CP018901_00064 - 200 0.24 11.1 5.6 1 1 0.00012 0.37 10.5 5.6 66 120 8 68 2 76 0.77 Yip1 domain Ion_trans PF00520.31 245 CP018901_00064 - 200 1.4 8.1 14.4 1 1 0.00058 1.7 7.8 14.4 127 183 5 52 1 170 0.81 Ion transport protein DHHC PF01529.20 134 CP018901_00064 - 200 1.8 8.6 10.9 1 1 0.001 3.1 7.9 10.9 47 112 7 69 3 101 0.70 DHHC palmitoyltransferase Spo7 PF03907.13 221 CP018901_00064 - 200 2.8 7.4 6.8 1 1 0.0019 5.6 6.4 6.8 33 91 16 69 7 76 0.84 Spo7-like protein CitMHS PF03600.16 300 CP018901_00066 - 208 0.0033 16.7 0.5 1 1 1.3e-06 0.0039 16.4 0.5 147 214 4 101 1 114 0.81 Citrate transporter Yip1 PF04893.17 172 CP018901_00066 - 208 0.4 10.4 6.1 1 1 0.00019 0.57 9.9 6.1 66 120 8 68 2 75 0.77 Yip1 domain DUF3810 PF12725.7 310 CP018901_00066 - 208 0.43 9.9 11.7 1 1 0.00018 0.55 9.5 11.6 19 85 8 74 1 173 0.61 Protein of unknown function (DUF3810) Ion_trans PF00520.31 245 CP018901_00066 - 208 0.5 9.5 12.3 1 1 0.00026 0.78 8.9 12.2 127 183 5 52 1 85 0.78 Ion transport protein Spo7 PF03907.13 221 CP018901_00066 - 208 2.2 7.7 7.5 1 1 0.0012 3.7 7.0 7.5 33 93 16 71 12 178 0.72 Spo7-like protein DHHC PF01529.20 134 CP018901_00066 - 208 3.4 7.8 11.8 1 1 0.0021 6.4 6.9 11.8 47 112 7 69 3 96 0.68 DHHC palmitoyltransferase Phage_lysozyme PF00959.19 109 CP018901_00067 - 1405 2.1e-10 41.0 2.1 1 2 1.3 4.8e+03 -2.0 0.2 25 64 689 732 680 751 0.61 Phage lysozyme Phage_lysozyme PF00959.19 109 CP018901_00067 - 1405 2.1e-10 41.0 2.1 2 2 1.7e-13 6e-10 39.6 0.1 3 108 1294 1403 1292 1404 0.86 Phage lysozyme Lipase_3 PF01764.25 142 CP018901_00067 - 1405 2.8e-07 30.5 0.0 1 1 2.8e-10 1e-06 28.7 0.0 39 105 191 251 158 267 0.71 Lipase (class 3) PGAP1 PF07819.13 231 CP018901_00067 - 1405 0.00084 19.1 2.0 1 3 8.3e-07 0.003 17.3 0.0 64 133 190 256 145 317 0.76 PGAP1-like protein PGAP1 PF07819.13 231 CP018901_00067 - 1405 0.00084 19.1 2.0 2 3 1.1 3.8e+03 -2.7 0.7 50 95 541 581 508 582 0.68 PGAP1-like protein PGAP1 PF07819.13 231 CP018901_00067 - 1405 0.00084 19.1 2.0 3 3 0.31 1.1e+03 -0.9 0.0 164 192 1000 1028 989 1049 0.80 PGAP1-like protein Abhydrolase_6 PF12697.7 220 CP018901_00067 - 1405 0.096 13.3 0.0 1 1 4.2e-05 0.15 12.6 0.0 62 86 203 230 164 263 0.74 Alpha/beta hydrolase family Thioesterase PF00975.20 231 CP018901_00067 - 1405 0.2 11.8 0.0 1 1 0.00014 0.51 10.4 0.0 59 94 205 242 184 260 0.71 Thioesterase domain SseC PF04888.12 317 CP018901_00069 - 1312 0.014 15.1 0.2 1 2 3e-06 0.014 15.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family SseC PF04888.12 317 CP018901_00069 - 1312 0.014 15.1 0.2 2 2 1.7 7.7e+03 -3.8 3.6 23 55 1260 1290 1243 1291 0.72 Secretion system effector C (SseC) like family ThrE PF06738.12 241 CP018901_00069 - 1312 0.014 14.8 0.8 1 1 7.8e-06 0.035 13.5 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter APOBEC_C PF05240.14 78 CP018901_00069 - 1312 0.018 15.0 0.5 1 1 2e-05 0.091 12.7 0.5 26 76 766 819 755 821 0.86 APOBEC-like C-terminal domain Hormone_2 PF00123.20 28 CP018901_00069 - 1312 0.035 14.0 0.1 1 1 3.5e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone UvrA_DNA-bind PF17755.1 110 CP018901_00070 - 426 0.0051 17.1 0.3 1 3 0.00018 3.2 8.1 0.0 24 65 36 77 30 90 0.84 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 CP018901_00070 - 426 0.0051 17.1 0.3 2 3 0.00088 16 5.9 0.0 15 33 96 113 92 129 0.75 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 CP018901_00070 - 426 0.0051 17.1 0.3 3 3 0.29 5.3e+03 -2.2 0.0 77 97 316 336 306 338 0.82 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 CP018901_00071 - 428 0.013 15.8 0.2 1 2 0.00038 6.8 7.1 0.1 24 57 32 65 19 83 0.84 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 CP018901_00071 - 428 0.013 15.8 0.2 2 2 0.00081 14 6.0 0.0 15 33 92 109 88 133 0.78 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 CP018901_00073 - 433 0.025 14.9 0.6 1 3 0.0012 11 6.4 0.1 25 57 38 70 31 88 0.85 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 CP018901_00073 - 433 0.025 14.9 0.6 2 3 0.0016 15 6.0 0.0 15 33 97 114 93 138 0.78 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 CP018901_00073 - 433 0.025 14.9 0.6 3 3 1.6 1.4e+04 -3.6 0.0 68 90 317 340 295 343 0.63 UvrA DNA-binding domain DUF3870 PF12986.7 94 CP018901_00073 - 433 0.11 12.8 0.0 1 1 2.7e-05 0.24 11.6 0.0 11 62 4 58 1 70 0.79 Domain of unknown function (DUF3870) FHA PF00498.26 69 CP018901_00074 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 CP018901_00074 - 299 0.0007 19.9 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 CP018901_00074 - 299 0.0007 19.9 0.0 2 2 0.23 1.4e+03 -0.3 0.0 31 57 199 225 198 231 0.89 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 CP018901_00074 - 299 0.05 14.0 3.1 1 2 0.044 2.6e+02 2.1 0.1 18 58 107 147 105 150 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 CP018901_00074 - 299 0.05 14.0 3.1 2 2 7.4e-05 0.44 11.0 0.9 21 82 151 212 146 218 0.92 Ferredoxin-fold anticodon binding domain ImcF-related_N PF14331.6 259 CP018901_00075 - 1175 6.2e-41 140.5 0.0 1 1 4.1e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 CP018901_00075 - 1175 5.9e-40 137.0 0.5 1 1 4.1e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 CP018901_00075 - 1175 8.2e-27 94.5 2.1 1 1 4.9e-30 1.3e-26 93.9 2.1 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 CP018901_00075 - 1175 0.0003 20.7 0.0 1 2 8.9e-06 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 CP018901_00075 - 1175 0.0003 20.7 0.0 2 2 0.047 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 CP018901_00075 - 1175 0.0011 19.0 0.1 1 2 1.7e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 CP018901_00075 - 1175 0.0011 19.0 0.1 2 2 4.1 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 CP018901_00075 - 1175 0.0033 17.1 5.0 1 3 1.4e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 CP018901_00075 - 1175 0.0033 17.1 5.0 2 3 0.078 2e+02 1.5 0.0 41 78 451 488 431 588 0.81 O-Antigen ligase Wzy_C PF04932.15 155 CP018901_00075 - 1175 0.0033 17.1 5.0 3 3 0.076 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 CP018901_00075 - 1175 0.055 13.2 0.1 1 2 0.00017 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 CP018901_00075 - 1175 0.055 13.2 0.1 2 2 0.72 1.8e+03 -1.3 0.0 22 37 841 856 831 873 0.75 P-loop containing region of AAA domain T6SS_HCP PF05638.12 129 CP018901_00076 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp DotU PF09850.9 205 CP018901_00077 - 257 3.6e-35 121.5 0.0 1 1 2.3e-39 4.2e-35 121.4 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_VasE PF05936.12 428 CP018901_00078 - 465 1.3e-112 376.6 0.0 1 1 8.6e-117 1.5e-112 376.4 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE T6SS-SciN PF12790.7 120 CP018901_00079 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasJ PF16989.5 255 CP018901_00080 - 415 1.2e-12 47.9 0.0 1 1 3.9e-16 1.7e-12 47.3 0.0 3 153 176 323 174 408 0.84 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 CP018901_00080 - 415 0.00014 22.0 0.2 1 2 1.8e-07 0.0008 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 CP018901_00080 - 415 0.00014 22.0 0.2 2 2 0.31 1.4e+03 -0.6 0.0 47 71 185 209 162 212 0.83 ImpA, N-terminal, type VI secretion system PX PF00787.24 113 CP018901_00080 - 415 0.074 13.0 14.5 1 3 0.00025 1.1 9.2 2.4 31 111 33 130 20 131 0.67 PX domain PX PF00787.24 113 CP018901_00080 - 415 0.074 13.0 14.5 2 3 0.00084 3.8 7.5 0.2 16 112 155 275 132 276 0.68 PX domain PX PF00787.24 113 CP018901_00080 - 415 0.074 13.0 14.5 3 3 0.052 2.3e+02 1.8 0.7 22 97 316 396 296 404 0.70 PX domain TetR_C_24 PF17932.1 114 CP018901_00080 - 415 0.19 12.0 0.0 1 1 8.8e-05 0.4 11.0 0.0 20 68 71 119 62 132 0.87 Tetracyclin repressor-like, C-terminal domain T6SS_VipA PF05591.12 155 CP018901_00081 - 161 6.4e-52 175.5 3.9 1 1 8e-56 7.2e-52 175.3 3.9 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 CP018901_00081 - 161 0.14 10.8 0.0 1 1 1.8e-05 0.16 10.5 0.0 171 227 55 111 40 127 0.90 Chitin synthase VipB PF05943.12 422 CP018901_00082 - 484 7.4e-170 565.3 0.0 1 1 9.8e-174 8.7e-170 565.1 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 CP018901_00082 - 484 0.33 11.0 2.6 1 4 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 CP018901_00082 - 484 0.33 11.0 2.6 2 4 1.5 1.4e+04 -3.9 0.0 103 117 130 143 127 147 0.66 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 CP018901_00082 - 484 0.33 11.0 2.6 3 4 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 CP018901_00082 - 484 0.33 11.0 2.6 4 4 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide GPW_gp25 PF04965.14 95 CP018901_00083 - 130 1.2e-09 37.8 0.0 1 1 2.6e-13 1.5e-09 37.5 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 CP018901_00083 - 130 0.0076 16.1 0.3 1 1 1.6e-06 0.0097 15.8 0.3 93 159 20 87 6 92 0.89 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 CP018901_00083 - 130 0.051 13.0 0.1 1 2 2.1e-05 0.12 11.8 0.1 82 121 5 46 1 64 0.83 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 CP018901_00083 - 130 0.051 13.0 0.1 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) T6SS_TssF PF05947.12 603 CP018901_00084 - 573 2.3e-110 369.9 0.0 1 1 1.5e-114 2.6e-110 369.8 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF T6SS_TssG PF06996.11 299 CP018901_00085 - 302 1.9e-47 161.9 0.0 1 1 1.2e-51 2.2e-47 161.8 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG Phage_GPD PF05954.11 304 CP018901_00086 - 882 1.2e-17 64.2 0.0 1 1 5.4e-21 1.9e-17 63.5 0.0 23 281 74 360 45 376 0.74 Phage late control gene D protein (GPD) DUF2345 PF10106.9 151 CP018901_00086 - 882 0.011 15.7 1.7 1 1 8.1e-06 0.029 14.2 1.7 28 132 775 874 772 878 0.84 Uncharacterized protein conserved in bacteria (DUF2345) Gp5_C PF06715.12 24 CP018901_00086 - 882 0.013 15.6 4.6 1 4 5.3e-05 0.19 11.9 0.1 3 24 657 678 655 686 0.67 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 CP018901_00086 - 882 0.013 15.6 4.6 2 4 0.2 7.2e+02 0.7 0.0 13 24 731 742 730 742 0.89 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 CP018901_00086 - 882 0.013 15.6 4.6 3 4 0.61 2.2e+03 -0.8 0.0 1 18 742 760 742 761 0.83 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 CP018901_00086 - 882 0.013 15.6 4.6 4 4 0.22 7.8e+02 0.6 0.1 2 23 752 773 751 774 0.81 Gp5 C-terminal repeat (3 copies) DUF3540 PF12059.8 199 CP018901_00086 - 882 0.1 12.4 0.8 1 2 0.25 9.1e+02 -0.5 0.0 31 45 534 548 532 555 0.80 Protein of unknown function (DUF3540) DUF3540 PF12059.8 199 CP018901_00086 - 882 0.1 12.4 0.8 2 2 0.00012 0.45 10.3 0.2 60 128 783 850 777 861 0.85 Protein of unknown function (DUF3540) TCL1_MTCP1 PF01840.17 116 CP018901_00086 - 882 0.1 12.2 0.0 1 2 0.053 1.9e+02 1.7 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 CP018901_00086 - 882 0.1 12.2 0.0 2 2 0.00085 3 7.5 0.0 19 52 461 494 452 517 0.80 TCL1/MTCP1 family Ank_3 PF13606.6 31 CP018901_00087 - 312 2.8e-10 39.5 0.1 1 4 0.017 63 4.6 0.0 8 26 73 93 71 97 0.83 Ankyrin repeat Ank_3 PF13606.6 31 CP018901_00087 - 312 2.8e-10 39.5 0.1 2 4 0.025 88 4.2 0.0 10 29 142 160 132 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 CP018901_00087 - 312 2.8e-10 39.5 0.1 3 4 2.5e-07 0.00091 19.5 0.0 2 30 168 195 167 196 0.95 Ankyrin repeat Ank_3 PF13606.6 31 CP018901_00087 - 312 2.8e-10 39.5 0.1 4 4 0.01 37 5.3 0.0 4 30 208 234 205 235 0.86 Ankyrin repeat Ank_2 PF12796.7 83 CP018901_00087 - 312 3.8e-09 37.0 0.0 1 2 0.53 1.9e+03 -0.5 0.0 4 18 74 92 70 121 0.56 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 CP018901_00087 - 312 3.8e-09 37.0 0.0 2 2 7.2e-12 2.6e-08 34.3 0.0 5 80 142 234 138 237 0.79 Ankyrin repeats (3 copies) Ank_4 PF13637.6 55 CP018901_00087 - 312 1.9e-05 25.1 0.0 1 3 1.3 4.7e+03 -1.6 0.0 10 21 76 89 67 99 0.55 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP018901_00087 - 312 1.9e-05 25.1 0.0 2 3 3e-07 0.0011 19.5 0.0 13 55 146 188 134 188 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP018901_00087 - 312 1.9e-05 25.1 0.0 3 3 0.11 3.9e+02 1.8 0.0 4 28 209 234 207 243 0.79 Ankyrin repeats (many copies) Ank PF00023.30 32 CP018901_00087 - 312 7.3e-05 23.0 0.0 1 3 0.023 82 3.9 0.0 10 25 142 158 132 165 0.82 Ankyrin repeat Ank PF00023.30 32 CP018901_00087 - 312 7.3e-05 23.0 0.0 2 3 0.00068 2.5 8.7 0.0 2 31 168 198 167 199 0.87 Ankyrin repeat Ank PF00023.30 32 CP018901_00087 - 312 7.3e-05 23.0 0.0 3 3 0.0054 19 5.9 0.0 15 28 220 234 206 237 0.70 Ankyrin repeat Ank_5 PF13857.6 56 CP018901_00087 - 312 0.0034 17.6 0.3 1 5 2.5 8.8e+03 -2.8 0.0 42 52 50 60 48 61 0.76 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP018901_00087 - 312 0.0034 17.6 0.3 2 5 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP018901_00087 - 312 0.0034 17.6 0.3 3 5 0.2 7.2e+02 0.7 0.0 23 41 141 159 139 166 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP018901_00087 - 312 0.0034 17.6 0.3 4 5 3.5e-05 0.13 12.7 0.0 9 48 162 200 153 202 0.83 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP018901_00087 - 312 0.0034 17.6 0.3 5 5 2.5 9.1e+03 -2.8 0.0 34 53 225 242 221 243 0.56 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 CP018901_00088 - 592 6.6e-08 32.8 0.0 1 3 0.38 6.9e+03 -2.6 0.1 20 27 371 378 352 399 0.59 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 CP018901_00088 - 592 6.6e-08 32.8 0.0 2 3 3.7e-12 6.6e-08 32.8 0.0 13 84 410 483 391 485 0.81 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 CP018901_00088 - 592 6.6e-08 32.8 0.0 3 3 1 1.8e+04 -4.0 0.7 46 58 492 505 490 517 0.52 Restriction endonuclease fold toxin 7 Ank_2 PF12796.7 83 CP018901_00089 - 304 1.3e-11 44.9 0.5 1 2 7e-08 0.00025 21.6 0.1 32 82 140 197 70 198 0.79 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 CP018901_00089 - 304 1.3e-11 44.9 0.5 2 2 3e-10 1.1e-06 29.1 0.1 5 80 142 235 137 238 0.79 Ankyrin repeats (3 copies) Ank_3 PF13606.6 31 CP018901_00089 - 304 4.9e-10 38.8 0.4 1 4 0.015 53 4.9 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 CP018901_00089 - 304 4.9e-10 38.8 0.4 2 4 0.024 85 4.2 0.0 10 29 142 160 132 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 CP018901_00089 - 304 4.9e-10 38.8 0.4 3 4 2.5e-06 0.0091 16.4 0.0 2 30 168 195 167 196 0.94 Ankyrin repeat Ank_3 PF13606.6 31 CP018901_00089 - 304 4.9e-10 38.8 0.4 4 4 0.0018 6.3 7.7 0.0 1 30 206 235 206 236 0.92 Ankyrin repeat Ank_4 PF13637.6 55 CP018901_00089 - 304 0.0015 19.1 0.1 1 4 0.81 2.9e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP018901_00089 - 304 0.0015 19.1 0.1 2 4 0.00017 0.6 10.8 0.0 13 55 146 188 134 188 0.78 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP018901_00089 - 304 0.0015 19.1 0.1 3 4 8.5e-05 0.31 11.7 0.0 2 55 169 228 168 228 0.84 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP018901_00089 - 304 0.0015 19.1 0.1 4 4 0.024 84 3.9 0.0 3 28 209 235 207 239 0.90 Ankyrin repeats (many copies) Ank PF00023.30 32 CP018901_00089 - 304 0.0038 17.6 0.0 1 3 0.024 85 3.9 0.0 10 25 142 158 132 166 0.83 Ankyrin repeat Ank PF00023.30 32 CP018901_00089 - 304 0.0038 17.6 0.0 2 3 0.03 1.1e+02 3.5 0.0 3 31 169 198 167 199 0.82 Ankyrin repeat Ank PF00023.30 32 CP018901_00089 - 304 0.0038 17.6 0.0 3 3 0.0051 18 6.0 0.0 15 28 221 235 206 238 0.69 Ankyrin repeat Ank_5 PF13857.6 56 CP018901_00089 - 304 0.023 15.0 0.1 1 3 0.59 2.1e+03 -0.8 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP018901_00089 - 304 0.023 15.0 0.1 2 3 0.00043 1.5 9.2 0.0 23 54 141 173 139 175 0.92 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP018901_00089 - 304 0.023 15.0 0.1 3 3 0.13 4.6e+02 1.3 0.0 15 29 179 193 173 210 0.76 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 CP018901_00090 - 572 1.4e-07 31.7 4.9 1 3 0.36 3.2e+03 -1.5 1.2 37 64 337 365 334 372 0.73 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 CP018901_00090 - 572 1.4e-07 31.7 4.9 2 3 0.51 4.6e+03 -2.0 0.1 13 29 378 394 366 399 0.52 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 CP018901_00090 - 572 1.4e-07 31.7 4.9 3 3 1.8e-11 1.7e-07 31.5 0.0 13 84 421 494 402 496 0.81 Restriction endonuclease fold toxin 7 DUF2239 PF09998.9 184 CP018901_00090 - 572 0.57 9.9 6.5 1 2 0.00018 1.6 8.5 0.6 23 71 46 92 38 103 0.74 Uncharacterized protein conserved in bacteria (DUF2239) DUF2239 PF09998.9 184 CP018901_00090 - 572 0.57 9.9 6.5 2 2 0.0045 40 3.9 0.8 4 83 259 373 257 382 0.72 Uncharacterized protein conserved in bacteria (DUF2239) Ank_2 PF12796.7 83 CP018901_00091 - 315 5.5e-13 49.3 0.5 1 2 2.7e-08 8.2e-05 23.1 0.1 27 82 132 199 71 200 0.70 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 CP018901_00091 - 315 5.5e-13 49.3 0.5 2 2 4.5e-11 1.3e-07 32.0 0.0 7 80 145 237 136 240 0.79 Ankyrin repeats (3 copies) Ank_3 PF13606.6 31 CP018901_00091 - 315 5.8e-11 41.6 0.3 1 4 0.021 63 4.6 0.0 8 26 73 93 71 97 0.83 Ankyrin repeat Ank_3 PF13606.6 31 CP018901_00091 - 315 5.8e-11 41.6 0.3 2 4 0.05 1.5e+02 3.5 0.0 12 29 145 161 135 163 0.78 Ankyrin repeat Ank_3 PF13606.6 31 CP018901_00091 - 315 5.8e-11 41.6 0.3 3 4 1.8e-07 0.00054 20.2 0.0 1 30 169 197 169 198 0.95 Ankyrin repeat Ank_3 PF13606.6 31 CP018901_00091 - 315 5.8e-11 41.6 0.3 4 4 0.0022 6.6 7.7 0.0 1 30 208 237 208 238 0.92 Ankyrin repeat Ank PF00023.30 32 CP018901_00091 - 315 1.9e-05 24.9 0.0 1 3 0.015 44 4.8 0.0 11 26 144 160 132 166 0.69 Ankyrin repeat Ank PF00023.30 32 CP018901_00091 - 315 1.9e-05 24.9 0.0 2 3 0.00038 1.1 9.8 0.0 1 31 169 200 169 201 0.87 Ankyrin repeat Ank PF00023.30 32 CP018901_00091 - 315 1.9e-05 24.9 0.0 3 3 0.0058 17 6.0 0.0 15 28 223 237 208 240 0.69 Ankyrin repeat Ank_4 PF13637.6 55 CP018901_00091 - 315 6.7e-05 23.4 0.2 1 3 1.4 4.3e+03 -1.5 0.0 10 21 76 89 67 102 0.57 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP018901_00091 - 315 6.7e-05 23.4 0.2 2 3 6e-06 0.018 15.6 0.1 14 55 148 190 132 190 0.79 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 CP018901_00091 - 315 6.7e-05 23.4 0.2 3 3 0.027 80 4.0 0.0 3 28 211 237 193 239 0.86 Ankyrin repeats (many copies) FAM25 PF15825.5 65 CP018901_00091 - 315 0.0037 17.6 1.6 1 2 0.0008 2.4 8.6 0.2 13 35 108 128 104 130 0.91 FAM25 family FAM25 PF15825.5 65 CP018901_00091 - 315 0.0037 17.6 1.6 2 2 0.0022 6.4 7.2 0.1 19 35 299 315 291 315 0.82 FAM25 family Ank_5 PF13857.6 56 CP018901_00091 - 315 0.028 14.7 0.1 1 4 3 8.9e+03 -2.8 0.0 42 52 50 60 48 61 0.76 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP018901_00091 - 315 0.028 14.7 0.1 2 4 0.67 2e+03 -0.7 0.0 26 42 79 96 73 99 0.80 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP018901_00091 - 315 0.028 14.7 0.1 3 4 0.14 4.3e+02 1.4 0.0 26 53 145 174 143 176 0.70 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 CP018901_00091 - 315 0.028 14.7 0.1 4 4 0.00028 0.82 10.1 0.0 2 46 155 200 154 211 0.77 Ankyrin repeats (many copies) TNT PF14021.6 88 CP018901_00094 - 364 1.5e-15 57.5 0.0 1 2 6.2e-13 1.1e-08 35.5 0.0 1 53 238 298 238 304 0.87 Tuberculosis necrotizing toxin TNT PF14021.6 88 CP018901_00094 - 364 1.5e-15 57.5 0.0 2 2 5.1e-08 0.00092 19.7 0.0 53 88 329 363 313 363 0.91 Tuberculosis necrotizing toxin LPD7 PF18821.1 94 CP018901_00095 - 184 0.032 14.3 0.5 1 2 0.0043 39 4.5 0.1 30 80 55 110 19 121 0.62 Large polyvalent protein-associated domain 7 LPD7 PF18821.1 94 CP018901_00095 - 184 0.032 14.3 0.5 2 2 0.00035 3.1 8.0 0.1 35 65 124 157 116 161 0.77 Large polyvalent protein-associated domain 7 Imm59 PF15597.6 100 CP018901_00095 - 184 1.1 9.8 8.9 1 3 0.00016 1.5 9.4 2.6 28 74 25 73 21 94 0.85 Immunity protein 59 Imm59 PF15597.6 100 CP018901_00095 - 184 1.1 9.8 8.9 2 3 0.033 3e+02 2.0 1.7 12 47 70 107 64 145 0.53 Immunity protein 59 Imm59 PF15597.6 100 CP018901_00095 - 184 1.1 9.8 8.9 3 3 0.023 2.1e+02 2.5 0.7 41 62 124 149 90 183 0.64 Immunity protein 59 AHH PF14412.6 114 CP018901_00096 - 258 1e-15 57.8 1.5 1 1 1.1e-19 2e-15 56.9 1.5 8 111 153 239 148 243 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH Ntox24 PF15529.6 97 CP018901_00099 - 318 0.003 17.8 1.3 1 2 0.41 7.4e+03 -2.7 0.0 26 45 180 201 159 204 0.52 Bacterial toxin 24 Ntox24 PF15529.6 97 CP018901_00099 - 318 0.003 17.8 1.3 2 2 2.7e-07 0.0048 17.2 0.3 5 93 228 301 223 305 0.76 Bacterial toxin 24 CobN-Mg_chel PF02514.16 1089 CP018901_00100 - 128 0.16 9.7 0.0 1 1 1e-05 0.19 9.5 0.0 299 369 36 100 24 109 0.71 CobN/Magnesium Chelatase Imm59 PF15597.6 100 CP018901_00101 - 185 0.054 14.0 8.6 1 2 6.5e-06 0.12 12.9 1.7 28 85 25 84 18 93 0.83 Immunity protein 59 Imm59 PF15597.6 100 CP018901_00101 - 185 0.054 14.0 8.6 2 2 0.0019 34 5.0 1.5 6 86 87 176 83 184 0.65 Immunity protein 59 AHH PF14412.6 114 CP018901_00102 - 258 5.7e-17 61.8 2.0 1 1 1.3e-20 1.1e-16 60.9 2.0 8 111 153 239 148 243 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH RRF PF01765.19 162 CP018901_00102 - 258 0.25 11.3 7.2 1 2 1.5e-05 0.13 12.2 1.5 122 156 161 196 125 199 0.78 Ribosome recycling factor RRF PF01765.19 162 CP018901_00102 - 258 0.25 11.3 7.2 2 2 0.018 1.6e+02 2.2 0.4 83 106 220 243 207 256 0.59 Ribosome recycling factor DUF4299 PF14132.6 301 CP018901_00104 - 116 1.4e-08 34.5 0.1 1 1 1.8e-12 1.6e-08 34.3 0.1 189 300 12 110 5 111 0.87 Domain of unknown function (DUF4299) XPG_I PF00867.18 94 CP018901_00104 - 116 0.12 12.7 0.0 1 1 1.7e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region Phage_GPD PF05954.11 304 CP018901_00106 - 838 1.1e-17 64.3 0.0 1 1 1.9e-21 1.7e-17 63.7 0.0 23 281 74 360 45 376 0.74 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 CP018901_00106 - 838 0.081 12.6 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 CP018901_00106 - 838 0.081 12.6 0.0 2 2 0.00032 2.9 7.6 0.0 19 52 461 494 452 517 0.80 TCL1/MTCP1 family BaxI_1 PF12811.7 232 CP018901_00108 - 203 0.28 10.7 13.0 1 1 4.8e-05 0.43 10.1 12.5 98 179 71 166 47 180 0.71 Bax inhibitor 1 like CrgA PF06781.12 88 CP018901_00108 - 203 0.43 10.7 6.3 1 2 5.6e-05 0.5 10.5 4.6 35 84 77 130 70 132 0.74 Cell division protein CrgA CrgA PF06781.12 88 CP018901_00108 - 203 0.43 10.7 6.3 2 2 0.52 4.6e+03 -2.3 0.0 31 45 158 172 143 184 0.54 Cell division protein CrgA Peripla_BP_2 PF01497.18 238 CP018901_00109 - 118 0.017 14.7 0.0 1 1 2.4e-06 0.021 14.4 0.0 39 69 64 98 38 108 0.76 Periplasmic binding protein DUF2345 PF10106.9 151 CP018901_00109 - 118 0.029 14.3 0.4 1 2 3e-05 0.27 11.1 0.1 86 144 18 74 15 81 0.81 Uncharacterized protein conserved in bacteria (DUF2345) DUF2345 PF10106.9 151 CP018901_00109 - 118 0.029 14.3 0.4 2 2 0.012 1e+02 2.7 0.1 91 132 70 110 67 114 0.63 Uncharacterized protein conserved in bacteria (DUF2345) DZR PF12773.7 49 CP018901_00113 - 114 0.039 14.0 0.3 1 1 9.1e-06 0.054 13.5 0.3 13 37 5 38 2 43 0.91 Double zinc ribbon DiS_P_DiS PF06750.13 84 CP018901_00113 - 114 0.04 14.1 0.4 1 1 1.3e-05 0.077 13.1 0.4 29 72 6 49 2 59 0.83 Bacterial Peptidase A24 N-terminal domain zinc_ribbon_4 PF13717.6 36 CP018901_00113 - 114 0.6 10.1 4.6 1 2 0.054 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP018901_00113 - 114 0.6 10.1 4.6 2 2 0.00011 0.64 10.0 0.4 3 14 30 41 29 45 0.88 zinc-ribbon domain Rapsyn_N PF10579.9 80 CP018901_00114 - 358 0.12 12.5 1.2 1 2 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 CP018901_00114 - 358 0.12 12.5 1.2 2 2 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region SprT-like PF10263.9 113 CP018901_00116 - 424 0.056 13.3 0.1 1 1 1.5e-05 0.13 12.1 0.1 58 93 316 353 294 360 0.81 SprT-like family Peptidase_M78 PF06114.13 123 CP018901_00116 - 424 0.077 12.9 0.1 1 1 2e-05 0.18 11.8 0.1 6 63 288 347 285 365 0.76 IrrE N-terminal-like domain Phage_integrase PF00589.22 172 CP018901_00119 - 312 5.1e-24 85.0 0.5 1 1 2.8e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 CP018901_00119 - 312 2.3e-05 24.6 3.9 1 3 1.4e-07 0.00043 20.5 1.9 1 79 16 99 16 99 0.88 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 CP018901_00119 - 312 2.3e-05 24.6 3.9 2 3 0.0015 4.4 7.7 0.0 13 35 80 102 76 109 0.89 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 CP018901_00119 - 312 2.3e-05 24.6 3.9 3 3 3.1 9.3e+03 -3.0 0.0 36 54 123 141 114 151 0.54 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP018901_00119 - 312 0.00011 22.4 4.6 1 3 3.8e-08 0.00011 22.4 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP018901_00119 - 312 0.00011 22.4 4.6 2 3 0.91 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 CP018901_00119 - 312 0.00011 22.4 4.6 3 3 1.8 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phyto-Amp PF15438.6 195 CP018901_00119 - 312 0.0094 15.8 0.3 1 1 5.8e-06 0.017 14.9 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma YbjN PF10722.9 127 CP018901_00119 - 312 0.011 15.8 0.3 1 2 0.00017 0.51 10.4 0.1 38 77 96 135 93 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 CP018901_00119 - 312 0.011 15.8 0.3 2 2 0.04 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator Phage_int_SAM_3 PF14659.6 58 CP018901_00119 - 312 0.028 14.7 3.2 1 1 3.6e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain FlaC_arch PF05377.11 55 CP018901_00120 - 76 0.0083 16.5 2.3 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 CP018901_00120 - 76 0.0083 16.5 2.3 2 2 4.6e-07 0.0083 16.5 2.3 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) WGR PF05406.15 80 CP018901_00121 - 75 2.4e-07 30.7 0.6 1 1 3.1e-11 2.7e-07 30.5 0.6 3 73 4 74 2 75 0.87 WGR domain Cadherin_pro PF08758.11 90 CP018901_00121 - 75 0.017 15.3 0.0 1 1 2.3e-06 0.021 15.0 0.0 15 45 26 56 12 62 0.81 Cadherin prodomain like YafQ_toxin PF15738.5 88 CP018901_00125 - 106 1.6e-26 92.4 3.7 1 1 4.7e-30 2.1e-26 92.0 3.7 1 87 20 106 20 106 0.95 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 CP018901_00125 - 106 1.9e-06 28.4 0.6 1 1 4.9e-10 2.2e-06 28.2 0.6 6 89 23 105 18 106 0.80 ParE toxin of type II toxin-antitoxin system, parDE Ribosomal_S2 PF00318.20 215 CP018901_00125 - 106 0.0042 16.3 0.9 1 1 1.2e-06 0.0053 16.0 0.9 98 164 27 94 21 99 0.83 Ribosomal protein S2 ParE-like_toxin PF15781.5 87 CP018901_00125 - 106 0.017 15.1 1.6 1 1 7.8e-06 0.035 14.1 1.6 5 82 26 105 22 106 0.79 ParE-like toxin of type II bacterial toxin-antitoxin system CCDC-167 PF15188.6 84 CP018901_00130 - 137 0.0044 17.3 0.4 1 1 8.6e-07 0.0077 16.6 0.4 37 79 77 119 21 120 0.77 Coiled-coil domain-containing protein 167 DUF3461 PF11944.8 125 CP018901_00130 - 137 0.018 15.1 3.2 1 1 5.4e-06 0.049 13.8 3.2 23 124 7 100 2 101 0.82 Protein of unknown function (DUF3461) Sigma_reg_N PF13800.6 90 CP018901_00131 - 37 0.13 12.6 0.3 1 1 7.1e-06 0.13 12.6 0.3 15 44 5 34 4 37 0.89 Sigma factor regulator N-terminal DUF5601 PF18151.1 65 CP018901_00132 - 118 0.038 14.3 0.2 1 1 7e-06 0.063 13.6 0.2 14 55 5 47 1 48 0.88 Domain of unknown function (DUF5601) DUF1640 PF07798.11 175 CP018901_00132 - 118 0.58 10.2 7.1 1 2 1.4e-05 0.12 12.4 2.4 52 100 26 77 9 86 0.83 Protein of unknown function (DUF1640) DUF1640 PF07798.11 175 CP018901_00132 - 118 0.58 10.2 7.1 2 2 0.068 6.1e+02 0.3 0.3 148 169 82 103 74 110 0.65 Protein of unknown function (DUF1640) HTH_3 PF01381.22 55 CP018901_00134 - 44 8.4e-07 29.0 0.0 1 1 1e-09 9.1e-07 28.9 0.0 1 33 9 41 9 44 0.95 Helix-turn-helix HTH_26 PF13443.6 63 CP018901_00134 - 44 0.00022 21.6 0.0 1 1 2.7e-07 0.00024 21.4 0.0 2 34 9 41 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 CP018901_00134 - 44 0.0007 19.1 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding HTH_19 PF12844.7 65 CP018901_00134 - 44 0.0012 18.8 0.0 1 1 1.4e-06 0.0013 18.8 0.0 4 37 9 42 7 44 0.91 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 CP018901_00134 - 44 0.002 18.0 0.1 1 1 2.6e-06 0.0023 17.7 0.1 1 32 9 41 9 43 0.84 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 CP018901_00134 - 44 0.002 17.9 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 CP018901_00134 - 44 0.0035 17.4 0.3 1 1 5.7e-06 0.0052 16.8 0.3 25 46 1 22 1 41 0.89 ENT domain HTH_31 PF13560.6 64 CP018901_00134 - 44 0.0089 16.4 0.0 1 1 1.2e-05 0.011 16.1 0.0 12 38 15 41 9 43 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 CP018901_00134 - 44 0.009 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 CP018901_00134 - 44 0.0098 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 CP018901_00134 - 44 0.013 14.9 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 CP018901_00134 - 44 0.019 14.9 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 CP018901_00134 - 44 0.02 14.7 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain HTH_AsnC-type PF13404.6 42 CP018901_00134 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain Phage_CI_repr PF07022.13 65 CP018901_00134 - 44 0.03 14.4 0.0 1 1 3.7e-05 0.033 14.3 0.0 3 33 9 38 7 41 0.84 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4 PF04545.16 50 CP018901_00134 - 44 0.034 13.7 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 HTH_17 PF12728.7 51 CP018901_00134 - 44 0.081 13.1 0.1 1 2 0.018 16 5.8 0.0 4 16 9 21 9 26 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 CP018901_00134 - 44 0.081 13.1 0.1 2 2 0.0085 7.6 6.8 0.0 6 26 22 42 19 44 0.78 Helix-turn-helix domain MerR PF00376.23 38 CP018901_00134 - 44 0.085 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 CP018901_00134 - 44 0.085 12.7 0.0 2 2 0.01 9.3 6.1 0.0 4 17 22 35 21 41 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 CP018901_00134 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 CP018901_00134 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain SNF2_N PF00176.23 350 CP020479_00001 - 2631 4.6e-14 51.9 0.1 1 1 7.2e-17 1.8e-13 49.9 0.1 59 251 1603 1882 1589 2063 0.80 SNF2 family N-terminal domain Eco57I PF07669.11 106 CP020479_00001 - 2631 2.4e-09 37.6 1.8 1 3 0.72 1.8e+03 -0.6 0.1 9 45 486 520 485 524 0.81 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP020479_00001 - 2631 2.4e-09 37.6 1.8 2 3 1.7e-10 4.5e-07 30.3 0.0 3 101 886 980 883 985 0.75 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP020479_00001 - 2631 2.4e-09 37.6 1.8 3 3 0.15 3.8e+02 1.6 0.1 31 71 1113 1151 1084 1173 0.78 Eco57I restriction-modification methylase Helicase_C PF00271.31 111 CP020479_00001 - 2631 2.2e-06 28.0 0.9 1 3 1.1 2.9e+03 -1.4 0.1 9 59 1246 1308 1239 1319 0.72 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP020479_00001 - 2631 2.2e-06 28.0 0.9 2 3 2.6 6.7e+03 -2.6 0.0 19 71 1632 1686 1621 1693 0.68 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP020479_00001 - 2631 2.2e-06 28.0 0.9 3 3 1.4e-08 3.6e-05 24.1 0.0 42 111 2132 2203 2102 2203 0.81 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP020479_00001 - 2631 0.0037 17.1 2.5 1 3 3.9e-06 0.01 15.6 0.1 8 108 1594 1691 1586 1704 0.77 DEAD/DEAH box helicase DEAD PF00270.29 176 CP020479_00001 - 2631 0.0037 17.1 2.5 2 3 0.44 1.1e+03 -0.8 0.1 77 135 1720 1789 1705 1815 0.61 DEAD/DEAH box helicase DEAD PF00270.29 176 CP020479_00001 - 2631 0.0037 17.1 2.5 3 3 3.5 9e+03 -3.7 0.1 69 106 2122 2165 2115 2178 0.66 DEAD/DEAH box helicase Methyltransf_23 PF13489.6 165 CP020479_00001 - 2631 0.0041 17.0 0.1 1 2 1.9e-05 0.049 13.5 0.0 13 109 814 957 805 1002 0.71 Methyltransferase domain Methyltransf_23 PF13489.6 165 CP020479_00001 - 2631 0.0041 17.0 0.1 2 2 0.52 1.3e+03 -0.9 0.0 110 159 2060 2110 2012 2113 0.78 Methyltransferase domain MTS PF05175.14 169 CP020479_00001 - 2631 0.0059 16.2 0.0 1 1 7.4e-06 0.019 14.5 0.0 82 143 869 938 822 957 0.73 Methyltransferase small domain Hydrolase PF00702.26 210 CP020479_00001 - 2631 0.1 12.8 1.1 1 3 4.6 1.2e+04 -3.7 0.0 21 80 333 422 328 438 0.62 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 210 CP020479_00001 - 2631 0.1 12.8 1.1 2 3 0.068 1.8e+02 2.3 0.0 180 202 2117 2142 2089 2144 0.71 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 210 CP020479_00001 - 2631 0.1 12.8 1.1 3 3 0.002 5.2 7.3 0.2 69 138 2272 2403 2239 2408 0.57 haloacid dehalogenase-like hydrolase AbiEi_4 PF13338.6 49 CP020479_00002 - 181 6.2e-05 23.1 0.0 1 3 1.7e-08 0.00031 20.8 0.0 28 47 41 60 35 62 0.92 Transcriptional regulator, AbiEi antitoxin AbiEi_4 PF13338.6 49 CP020479_00002 - 181 6.2e-05 23.1 0.0 2 3 0.18 3.2e+03 -1.6 0.0 32 42 93 103 91 105 0.80 Transcriptional regulator, AbiEi antitoxin AbiEi_4 PF13338.6 49 CP020479_00002 - 181 6.2e-05 23.1 0.0 3 3 0.51 9.2e+03 -3.1 0.0 43 47 146 150 145 152 0.83 Transcriptional regulator, AbiEi antitoxin AbiEii PF08843.11 239 CP020479_00003 - 305 5.5e-30 105.1 0.1 1 1 4.5e-34 8e-30 104.5 0.1 2 225 37 252 36 263 0.82 Nucleotidyl transferase AbiEii toxin, Type IV TA system JmjN PF02375.17 34 CP020479_00004 - 86 1.2 9.2 3.8 1 3 0.0019 17 5.5 0.1 12 27 4 19 1 19 0.89 jmjN domain JmjN PF02375.17 34 CP020479_00004 - 86 1.2 9.2 3.8 2 3 0.0051 46 4.1 0.3 8 26 55 73 53 75 0.89 jmjN domain JmjN PF02375.17 34 CP020479_00004 - 86 1.2 9.2 3.8 3 3 0.22 2e+03 -1.1 0.0 14 22 77 85 74 86 0.82 jmjN domain MtrG PF04210.13 64 CP020479_00004 - 86 1.2 9.1 5.1 1 2 0.0049 44 4.0 0.8 6 34 19 47 16 49 0.86 Tetrahydromethanopterin S-methyltransferase, subunit G MtrG PF04210.13 64 CP020479_00004 - 86 1.2 9.1 5.1 2 2 8.9e-05 0.8 9.6 0.7 8 29 43 64 40 73 0.87 Tetrahydromethanopterin S-methyltransferase, subunit G RelB PF04221.12 83 CP020479_00005 - 90 2.1e-09 37.2 0.0 1 1 1.5e-13 2.6e-09 36.9 0.0 1 58 2 59 2 86 0.84 RelB antitoxin ParE_toxin PF05016.15 90 CP020479_00006 - 88 2.7e-05 24.7 0.5 1 1 1.7e-09 3e-05 24.5 0.5 12 82 9 78 5 86 0.75 ParE toxin of type II toxin-antitoxin system, parDE Apolipoprotein PF01442.18 190 CP020479_00007 - 255 0.00016 21.6 2.2 1 2 1.9 5.7e+03 -3.0 0.1 29 41 86 98 72 103 0.45 Apolipoprotein A1/A4/E domain Apolipoprotein PF01442.18 190 CP020479_00007 - 255 0.00016 21.6 2.2 2 2 5.5e-08 0.00016 21.6 2.2 34 107 169 241 147 253 0.85 Apolipoprotein A1/A4/E domain PP_kinase PF02503.17 202 CP020479_00007 - 255 0.011 15.3 0.7 1 2 3.7e-06 0.011 15.3 0.7 111 193 19 101 6 108 0.83 Polyphosphate kinase middle domain PP_kinase PF02503.17 202 CP020479_00007 - 255 0.011 15.3 0.7 2 2 1 3e+03 -2.4 0.1 119 134 193 208 183 234 0.54 Polyphosphate kinase middle domain T3SSipB PF16535.5 155 CP020479_00007 - 255 0.025 15.0 0.3 1 1 1.8e-05 0.053 14.0 0.3 20 77 196 253 191 255 0.95 Type III cell invasion protein SipB Thump_like PF18096.1 78 CP020479_00007 - 255 0.046 13.6 0.6 1 2 7.2e-05 0.21 11.5 0.1 15 49 59 94 51 102 0.87 THUMP domain-like Thump_like PF18096.1 78 CP020479_00007 - 255 0.046 13.6 0.6 2 2 0.73 2.2e+03 -1.3 0.1 9 22 198 211 194 223 0.69 THUMP domain-like Fib_alpha PF08702.10 143 CP020479_00007 - 255 7.7 6.7 9.5 1 2 0.58 1.7e+03 -0.9 0.1 33 69 10 45 2 72 0.69 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP020479_00007 - 255 7.7 6.7 9.5 2 2 0.00059 1.8 8.8 5.0 22 116 173 250 153 254 0.47 Fibrinogen alpha/beta chain family KxDL PF10241.9 86 CP020479_00007 - 255 8.3 6.8 12.9 1 2 0.26 7.8e+02 0.4 0.3 30 46 86 102 83 105 0.86 Uncharacterized conserved protein KxDL PF10241.9 86 CP020479_00007 - 255 8.3 6.8 12.9 2 2 0.00064 1.9 8.8 7.2 20 80 194 254 182 255 0.91 Uncharacterized conserved protein NYN PF01936.18 147 CP020479_00008 - 215 2.8e-10 40.8 1.4 1 1 2.7e-13 9.5e-10 39.1 1.4 1 127 2 182 2 202 0.67 NYN domain Tn7_Tnp_TnsA_C PF08721.11 83 CP020479_00008 - 215 0.0029 18.2 1.9 1 2 0.0054 20 5.9 0.1 25 55 15 45 6 55 0.83 TnsA endonuclease C terminal Tn7_Tnp_TnsA_C PF08721.11 83 CP020479_00008 - 215 0.0029 18.2 1.9 2 2 0.00012 0.42 11.3 0.3 8 39 72 101 68 113 0.65 TnsA endonuclease C terminal TMPIT PF07851.13 324 CP020479_00008 - 215 0.078 12.2 2.2 1 1 3e-05 0.11 11.7 2.2 3 88 8 94 6 133 0.62 TMPIT-like protein ApbA PF02558.16 152 CP020479_00008 - 215 0.11 12.2 0.0 1 1 4.9e-05 0.18 11.5 0.0 66 113 150 196 109 206 0.81 Ketopantoate reductase PanE/ApbA Vir_act_alpha_C PF10400.9 77 CP020479_00008 - 215 0.28 11.9 1.6 1 2 0.00016 0.57 10.9 1.1 12 73 4 81 1 85 0.73 Virulence activator alpha C-term Vir_act_alpha_C PF10400.9 77 CP020479_00008 - 215 0.28 11.9 1.6 2 2 1.6 5.6e+03 -1.9 0.0 31 58 88 116 79 121 0.52 Virulence activator alpha C-term UvrD_C PF13361.6 349 CP020479_00009 - 453 8e-16 58.3 3.4 1 2 3.7e-06 0.0066 15.9 0.6 2 47 227 276 226 333 0.69 UvrD-like helicase C-terminal domain UvrD_C PF13361.6 349 CP020479_00009 - 453 8e-16 58.3 3.4 2 2 2.3e-14 4.2e-11 42.8 0.2 270 342 363 447 298 448 0.74 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 146 CP020479_00009 - 453 2.3e-12 47.5 0.0 1 2 4.8e-15 8.7e-12 45.6 0.0 9 146 19 211 12 211 0.78 AAA domain AAA_19 PF13245.6 146 CP020479_00009 - 453 2.3e-12 47.5 0.0 2 2 1.2 2.2e+03 -1.1 0.0 42 58 267 283 213 392 0.55 AAA domain Viral_helicase1 PF01443.18 234 CP020479_00009 - 453 2e-09 37.6 1.2 1 3 2.1e-05 0.037 13.7 0.0 3 53 25 78 23 92 0.75 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 CP020479_00009 - 453 2e-09 37.6 1.2 2 3 1.5e-06 0.0027 17.5 0.3 16 173 121 276 118 293 0.74 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 CP020479_00009 - 453 2e-09 37.6 1.2 3 3 0.036 65 3.2 0.0 214 227 431 444 370 448 0.79 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.21 315 CP020479_00009 - 453 5.4e-09 36.0 22.6 1 4 0.00082 1.5 8.3 0.1 13 32 20 39 8 46 0.77 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 CP020479_00009 - 453 5.4e-09 36.0 22.6 2 4 0.0053 9.4 5.6 0.2 85 140 63 118 51 130 0.78 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 CP020479_00009 - 453 5.4e-09 36.0 22.6 3 4 8.9e-11 1.6e-07 31.2 2.9 206 301 106 212 101 225 0.74 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 CP020479_00009 - 453 5.4e-09 36.0 22.6 4 4 0.091 1.6e+02 1.6 4.9 106 209 326 433 255 446 0.71 UvrD/REP helicase N-terminal domain UvrD_C_2 PF13538.6 52 CP020479_00009 - 453 1.2e-06 28.2 0.0 1 2 6.1e-05 0.11 12.3 0.0 2 22 381 401 380 412 0.85 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 52 CP020479_00009 - 453 1.2e-06 28.2 0.0 2 2 3.1e-05 0.055 13.3 0.0 32 46 430 444 418 447 0.77 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 192 CP020479_00009 - 453 5.1e-05 23.1 0.0 1 1 1.2e-07 0.00021 21.1 0.0 2 128 3 206 2 268 0.76 AAA domain ResIII PF04851.15 171 CP020479_00009 - 453 0.0028 17.7 3.3 1 3 1.6e-06 0.0028 17.7 3.3 11 147 10 185 1 230 0.61 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP020479_00009 - 453 0.0028 17.7 3.3 2 3 1.4 2.6e+03 -1.7 0.0 62 88 212 238 184 281 0.65 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP020479_00009 - 453 0.0028 17.7 3.3 3 3 0.91 1.6e+03 -1.1 0.2 91 111 358 386 306 431 0.58 Type III restriction enzyme, res subunit PhoH PF02562.16 205 CP020479_00009 - 453 0.0036 16.8 0.4 1 2 0.0039 7.1 6.0 0.0 7 41 5 42 2 63 0.79 PhoH-like protein PhoH PF02562.16 205 CP020479_00009 - 453 0.0036 16.8 0.4 2 2 0.00062 1.1 8.7 0.1 122 168 173 217 168 230 0.76 PhoH-like protein AAA_22 PF13401.6 137 CP020479_00009 - 453 0.024 14.9 0.2 1 1 7.7e-05 0.14 12.5 0.2 4 31 19 46 14 205 0.91 AAA domain AAA_11 PF13086.6 261 CP020479_00009 - 453 0.15 11.8 0.2 1 3 0.26 4.7e+02 0.3 0.0 4 39 5 42 2 77 0.76 AAA domain AAA_11 PF13086.6 261 CP020479_00009 - 453 0.15 11.8 0.2 2 3 0.0013 2.3 7.9 0.0 216 253 166 205 156 205 0.77 AAA domain AAA_11 PF13086.6 261 CP020479_00009 - 453 0.15 11.8 0.2 3 3 1.2 2.2e+03 -1.8 0.1 173 188 409 424 324 441 0.62 AAA domain Fic PF02661.18 97 CP020479_00011 - 303 3.8e-13 50.1 0.5 1 3 0.51 4.6e+03 -1.4 0.0 36 49 59 72 7 101 0.57 Fic/DOC family Fic PF02661.18 97 CP020479_00011 - 303 3.8e-13 50.1 0.5 2 3 2.4e-16 2.1e-12 47.8 0.0 2 97 111 222 110 222 0.82 Fic/DOC family Fic PF02661.18 97 CP020479_00011 - 303 3.8e-13 50.1 0.5 3 3 0.47 4.2e+03 -1.3 0.0 37 57 245 265 227 279 0.66 Fic/DOC family Tli4_N PF18443.1 137 CP020479_00011 - 303 3.3 8.1 9.6 1 2 0.00015 1.3 9.4 6.2 39 122 5 86 1 141 0.77 Tle cognate immunity protein 4 N-terminal domain Tli4_N PF18443.1 137 CP020479_00011 - 303 3.3 8.1 9.6 2 2 0.2 1.8e+03 -0.8 0.1 12 57 144 189 137 250 0.72 Tle cognate immunity protein 4 N-terminal domain YopX PF09643.10 131 CP020479_00012 - 143 4.1e-12 46.3 6.8 1 2 0.0019 35 4.5 0.1 1 25 7 31 7 39 0.78 YopX protein YopX PF09643.10 131 CP020479_00012 - 143 4.1e-12 46.3 6.8 2 2 1.7e-15 3.1e-11 43.5 4.1 48 130 34 126 22 127 0.73 YopX protein TMF_DNA_bd PF12329.8 74 CP020479_00013 - 636 0.00073 19.5 18.5 1 6 0.22 3.9e+03 -2.1 6.0 39 64 231 256 215 283 0.68 TATA element modulatory factor 1 DNA binding TMF_DNA_bd PF12329.8 74 CP020479_00013 - 636 0.00073 19.5 18.5 2 6 0.085 1.5e+03 -0.8 2.8 41 69 327 355 303 358 0.78 TATA element modulatory factor 1 DNA binding TMF_DNA_bd PF12329.8 74 CP020479_00013 - 636 0.00073 19.5 18.5 3 6 0.038 6.8e+02 0.4 17.6 6 71 392 464 388 467 0.65 TATA element modulatory factor 1 DNA binding TMF_DNA_bd PF12329.8 74 CP020479_00013 - 636 0.00073 19.5 18.5 4 6 4.1e-08 0.00073 19.5 18.5 1 72 464 535 464 537 0.95 TATA element modulatory factor 1 DNA binding TMF_DNA_bd PF12329.8 74 CP020479_00013 - 636 0.00073 19.5 18.5 5 6 0.088 1.6e+03 -0.8 4.9 36 71 530 565 529 567 0.88 TATA element modulatory factor 1 DNA binding TMF_DNA_bd PF12329.8 74 CP020479_00013 - 636 0.00073 19.5 18.5 6 6 0.054 9.7e+02 -0.1 14.1 28 71 567 610 555 616 0.82 TATA element modulatory factor 1 DNA binding DUF386 PF04074.12 148 CP020479_00014 - 82 0.024 14.5 0.0 1 1 1.4e-06 0.026 14.5 0.0 89 132 7 54 1 71 0.80 YhcH/YjgK/YiaL AAA_31 PF13614.6 177 CP020479_00015 - 237 8.4e-18 64.9 2.1 1 3 2.4e-14 3.1e-11 43.5 0.0 3 48 15 59 12 76 0.80 AAA domain AAA_31 PF13614.6 177 CP020479_00015 - 237 8.4e-18 64.9 2.1 2 3 2.7e-07 0.00034 20.6 0.1 99 175 73 148 63 152 0.87 AAA domain AAA_31 PF13614.6 177 CP020479_00015 - 237 8.4e-18 64.9 2.1 3 3 2.4 3e+03 -2.1 0.0 69 86 174 191 163 220 0.64 AAA domain CbiA PF01656.23 128 CP020479_00015 - 237 6e-17 61.9 0.2 1 1 6.7e-20 8.6e-17 61.4 0.2 2 126 17 207 16 209 0.81 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 262 CP020479_00015 - 237 7.9e-15 54.8 0.3 1 3 9.8e-10 1.3e-06 28.0 0.0 2 54 15 65 14 71 0.90 ATPase MipZ MipZ PF09140.11 262 CP020479_00015 - 237 7.9e-15 54.8 0.3 2 3 1.1e-08 1.4e-05 24.6 0.1 88 142 80 134 73 151 0.87 ATPase MipZ MipZ PF09140.11 262 CP020479_00015 - 237 7.9e-15 54.8 0.3 3 3 3.7 4.7e+03 -3.4 0.0 211 231 191 211 174 222 0.72 ATPase MipZ VirC1 PF07015.11 231 CP020479_00015 - 237 5.1e-07 29.2 0.0 1 1 5.9e-10 7.6e-07 28.7 0.0 6 184 18 201 13 217 0.77 VirC1 protein ParA PF10609.9 246 CP020479_00015 - 237 1.5e-06 27.9 0.2 1 2 8.4e-08 0.00011 21.8 0.0 3 41 13 50 11 54 0.90 NUBPL iron-transfer P-loop NTPase ParA PF10609.9 246 CP020479_00015 - 237 1.5e-06 27.9 0.2 2 2 0.02 25 4.2 0.0 110 163 90 141 78 172 0.84 NUBPL iron-transfer P-loop NTPase CLP1_P PF16575.5 188 CP020479_00015 - 237 5.2e-05 23.1 0.0 1 2 7.1e-07 0.00091 19.1 0.0 4 35 24 54 21 58 0.88 mRNA cleavage and polyadenylation factor CLP1 P-loop CLP1_P PF16575.5 188 CP020479_00015 - 237 5.2e-05 23.1 0.0 2 2 0.15 1.9e+02 1.7 0.0 99 112 88 101 69 151 0.76 mRNA cleavage and polyadenylation factor CLP1 P-loop ArsA_ATPase PF02374.15 305 CP020479_00015 - 237 0.00018 20.8 0.3 1 1 2.4e-07 0.0003 20.1 0.1 3 107 16 122 12 145 0.59 Anion-transporting ATPase SRP54 PF00448.22 196 CP020479_00015 - 237 0.00025 20.7 1.1 1 2 8.4e-07 0.0011 18.7 0.4 11 99 24 107 13 115 0.77 SRP54-type protein, GTPase domain SRP54 PF00448.22 196 CP020479_00015 - 237 0.00025 20.7 1.1 2 2 4.4 5.7e+03 -3.3 0.0 103 127 168 195 165 218 0.57 SRP54-type protein, GTPase domain AAA_33 PF13671.6 143 CP020479_00015 - 237 0.016 15.4 0.0 1 1 3.3e-05 0.042 14.0 0.0 9 86 24 108 22 117 0.75 AAA domain Fer4_NifH PF00142.18 271 CP020479_00015 - 237 0.016 14.6 0.0 1 1 3e-05 0.038 13.4 0.0 7 43 21 55 15 103 0.85 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF1188 PF06690.11 248 CP020479_00015 - 237 0.057 13.0 2.3 1 2 6.4e-05 0.081 12.5 1.9 57 159 33 153 26 222 0.80 Protein of unknown function (DUF1188) DUF1188 PF06690.11 248 CP020479_00015 - 237 0.057 13.0 2.3 2 2 3.1 4e+03 -2.9 0.0 126 147 210 231 201 235 0.69 Protein of unknown function (DUF1188) AAA_26 PF13500.6 198 CP020479_00015 - 237 0.089 12.6 1.2 1 2 0.005 6.3 6.6 0.1 121 153 4 36 1 49 0.65 AAA domain AAA_26 PF13500.6 198 CP020479_00015 - 237 0.089 12.6 1.2 2 2 0.0069 8.8 6.1 0.7 11 31 24 43 13 192 0.48 AAA domain AAA_18 PF13238.6 130 CP020479_00015 - 237 0.098 13.2 0.6 1 2 0.001 1.3 9.5 0.1 8 83 24 101 22 129 0.57 AAA domain AAA_18 PF13238.6 130 CP020479_00015 - 237 0.098 13.2 0.6 2 2 0.28 3.5e+02 1.7 0.1 17 62 166 219 161 232 0.69 AAA domain PAC2 PF09754.9 213 CP020479_00015 - 237 0.12 12.3 0.0 1 1 0.00013 0.16 11.9 0.0 27 112 108 198 93 231 0.73 PAC2 family DUF4271 PF14093.6 207 CP020479_00016 - 135 0.0013 18.7 1.3 1 1 7.7e-07 0.0017 18.3 1.3 8 127 13 132 12 133 0.67 Domain of unknown function (DUF4271) SLAC1 PF03595.17 324 CP020479_00016 - 135 0.0015 17.9 2.7 1 1 9e-07 0.002 17.4 2.8 134 197 56 120 12 132 0.81 Voltage-dependent anion channel PEN-2 PF10251.9 93 CP020479_00016 - 135 0.0075 16.7 0.7 1 2 3.1 7e+03 -2.5 0.0 65 86 16 36 13 44 0.53 Presenilin enhancer-2 subunit of gamma secretase PEN-2 PF10251.9 93 CP020479_00016 - 135 0.0075 16.7 0.7 2 2 6.2e-06 0.014 15.8 0.5 18 66 60 108 53 132 0.80 Presenilin enhancer-2 subunit of gamma secretase DUF3413 PF11893.8 248 CP020479_00016 - 135 0.028 13.6 2.1 1 2 1 2.3e+03 -2.5 0.0 170 179 15 24 4 39 0.57 Domain of unknown function (DUF3413) DUF3413 PF11893.8 248 CP020479_00016 - 135 0.028 13.6 2.1 2 2 1.3e-05 0.029 13.5 1.2 16 71 55 114 50 131 0.72 Domain of unknown function (DUF3413) DUF456 PF04306.13 139 CP020479_00016 - 135 0.033 14.5 4.7 1 1 2.6e-05 0.058 13.7 4.7 25 87 52 115 12 119 0.81 Protein of unknown function (DUF456) TctB PF07331.11 135 CP020479_00016 - 135 0.17 12.1 8.2 1 1 0.00014 0.32 11.3 8.2 14 97 23 119 11 132 0.57 Tripartite tricarboxylate transporter TctB family DUF1772 PF08592.11 137 CP020479_00016 - 135 0.25 11.7 2.0 1 1 9.7e-05 0.22 11.8 0.7 32 85 58 111 34 118 0.74 Domain of unknown function (DUF1772) DUF4405 PF14358.6 66 CP020479_00016 - 135 4.8 7.8 8.7 1 2 0.071 1.6e+02 2.9 0.6 49 61 16 28 11 29 0.91 Domain of unknown function (DUF4405) DUF4405 PF14358.6 66 CP020479_00016 - 135 4.8 7.8 8.7 2 2 0.0013 2.9 8.5 1.9 5 45 98 134 94 135 0.79 Domain of unknown function (DUF4405) TSNAXIP1_N PF15739.5 111 CP020479_00017 - 102 0.012 16.0 2.3 1 1 1.6e-06 0.015 15.7 2.3 35 69 34 70 30 102 0.72 Translin-associated factor X-interacting N-terminus CsoSCA PF08936.10 455 CP020479_00017 - 102 0.045 12.4 0.0 1 1 5.7e-06 0.051 12.2 0.0 352 388 41 77 24 83 0.89 Carboxysome Shell Carbonic Anhydrase SPC12 PF06645.13 71 CP020479_00018 - 175 0.33 11.1 8.5 1 2 0.14 1.2e+03 -0.4 0.1 45 60 61 77 49 85 0.77 Microsomal signal peptidase 12 kDa subunit (SPC12) SPC12 PF06645.13 71 CP020479_00018 - 175 0.33 11.1 8.5 2 2 9.1e-06 0.082 13.0 3.5 10 52 98 141 93 143 0.80 Microsomal signal peptidase 12 kDa subunit (SPC12) Arteri_Gl PF00951.18 179 CP020479_00018 - 175 8.1 6.2 11.4 1 2 0.004 36 4.1 2.8 57 97 56 94 43 114 0.77 Arterivirus GL envelope glycoprotein Arteri_Gl PF00951.18 179 CP020479_00018 - 175 8.1 6.2 11.4 2 2 0.00053 4.8 7.0 2.1 34 70 115 151 108 172 0.82 Arterivirus GL envelope glycoprotein DUF4521 PF15021.6 204 CP020479_00019 - 314 0.007 16.3 0.2 1 1 6.4e-07 0.011 15.6 0.2 52 105 94 147 83 164 0.85 Protein of unknown function (DUF4521) SOAR PF16533.5 101 CP020479_00020 - 178 0.023 14.7 1.5 1 2 0.51 1.3e+03 -0.6 0.1 11 25 53 67 31 89 0.68 STIM1 Orai1-activating region SOAR PF16533.5 101 CP020479_00020 - 178 0.023 14.7 1.5 2 2 8.8e-06 0.023 14.7 1.5 6 70 99 165 95 174 0.86 STIM1 Orai1-activating region zf-RING_9 PF13901.6 206 CP020479_00020 - 178 0.071 13.1 3.2 1 1 3.7e-05 0.095 12.7 3.2 34 147 21 137 18 146 0.84 Putative zinc-RING and/or ribbon Pro-rich_19 PF15455.6 363 CP020479_00020 - 178 0.098 11.8 0.1 1 1 4.6e-05 0.12 11.5 0.1 26 102 3 76 1 91 0.82 Proline-rich 19 DUF2959 PF11172.8 190 CP020479_00020 - 178 0.21 11.7 8.6 1 2 1.9e-05 0.048 13.8 4.0 115 190 33 110 17 110 0.89 Protein of unknown function (DUF2959) DUF2959 PF11172.8 190 CP020479_00020 - 178 0.21 11.7 8.6 2 2 0.35 9e+02 -0.1 0.1 94 122 111 139 108 144 0.77 Protein of unknown function (DUF2959) DASH_Hsk3 PF08227.11 45 CP020479_00020 - 178 0.79 10.1 3.9 1 4 2.7 7e+03 -2.5 0.0 7 12 46 51 35 53 0.51 DASH complex subunit Hsk3 like DASH_Hsk3 PF08227.11 45 CP020479_00020 - 178 0.79 10.1 3.9 2 4 0.44 1.1e+03 0.0 0.0 4 19 75 90 74 103 0.72 DASH complex subunit Hsk3 like DASH_Hsk3 PF08227.11 45 CP020479_00020 - 178 0.79 10.1 3.9 3 4 0.39 9.9e+02 0.2 0.1 9 23 126 140 125 141 0.79 DASH complex subunit Hsk3 like DASH_Hsk3 PF08227.11 45 CP020479_00020 - 178 0.79 10.1 3.9 4 4 0.0013 3.4 8.1 0.1 4 19 150 165 149 169 0.91 DASH complex subunit Hsk3 like DUF1664 PF07889.12 124 CP020479_00020 - 178 1.2 9.1 7.2 1 2 0.0049 13 5.9 1.2 63 120 35 92 24 96 0.71 Protein of unknown function (DUF1664) DUF1664 PF07889.12 124 CP020479_00020 - 178 1.2 9.1 7.2 2 2 0.0051 13 5.8 0.3 57 79 146 168 125 177 0.75 Protein of unknown function (DUF1664) Fib_alpha PF08702.10 143 CP020479_00020 - 178 3.4 7.8 6.7 1 2 0.011 29 4.8 3.8 17 76 34 93 18 141 0.65 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP020479_00020 - 178 3.4 7.8 6.7 2 2 0.012 30 4.8 0.5 32 78 123 169 111 176 0.78 Fibrinogen alpha/beta chain family SpoIIIAH PF12685.7 210 CP020479_00021 - 218 0.00058 19.7 1.1 1 1 8.9e-08 0.0008 19.3 1.1 8 122 30 159 22 173 0.57 SpoIIIAH-like protein ASFV_J13L PF05568.11 189 CP020479_00021 - 218 0.0095 15.7 0.3 1 1 1.8e-06 0.016 15.0 0.3 27 118 17 114 9 156 0.71 African swine fever virus J13L protein Baculo_F PF12259.8 610 CP020479_00022 - 71 0.02 13.4 0.7 1 1 3.5e-06 0.021 13.4 0.7 160 226 1 70 1 71 0.84 Baculovirus F protein CcdA PF07362.12 71 CP020479_00022 - 71 0.031 14.7 0.0 1 1 7.9e-06 0.047 14.1 0.0 33 63 14 42 4 47 0.79 Post-segregation antitoxin CcdA Phage_Mu_Gam PF07352.12 155 CP020479_00022 - 71 0.086 12.7 0.0 1 1 1.5e-05 0.091 12.7 0.0 3 28 15 40 14 70 0.86 Bacteriophage Mu Gam like protein Yae1_N PF09811.9 39 CP020479_00023 - 286 0.86 9.4 2.9 1 3 2.5e-05 0.44 10.3 0.2 2 22 39 59 38 60 0.95 Essential protein Yae1, N terminal Yae1_N PF09811.9 39 CP020479_00023 - 286 0.86 9.4 2.9 2 3 0.43 7.7e+03 -3.3 0.0 8 14 94 100 93 102 0.52 Essential protein Yae1, N terminal Yae1_N PF09811.9 39 CP020479_00023 - 286 0.86 9.4 2.9 3 3 0.42 7.6e+03 -3.3 0.0 15 21 159 165 158 166 0.48 Essential protein Yae1, N terminal DUF5638 PF18688.1 104 CP020479_00026 - 208 0.0095 16.2 6.4 1 3 0.00025 4.5 7.6 0.6 23 50 10 37 1 59 0.71 Family of unknown function (DUF5638) DUF5638 PF18688.1 104 CP020479_00026 - 208 0.0095 16.2 6.4 2 3 0.18 3.1e+03 -1.5 0.0 64 82 76 94 73 101 0.80 Family of unknown function (DUF5638) DUF5638 PF18688.1 104 CP020479_00026 - 208 0.0095 16.2 6.4 3 3 2.5e-05 0.45 10.8 0.3 9 54 149 194 145 199 0.86 Family of unknown function (DUF5638) YvrJ PF12841.7 36 CP020479_00027 - 92 2.2 7.9 5.6 1 3 0.14 2.6e+03 -2.0 0.0 22 32 17 27 15 30 0.79 YvrJ protein family YvrJ PF12841.7 36 CP020479_00027 - 92 2.2 7.9 5.6 2 3 0.00026 4.7 6.8 0.1 9 17 40 48 40 48 0.94 YvrJ protein family YvrJ PF12841.7 36 CP020479_00027 - 92 2.2 7.9 5.6 3 3 0.0044 79 2.9 0.3 19 28 78 87 76 90 0.82 YvrJ protein family Phage_holin_6_1 PF09682.10 101 CP020479_00028 - 56 0.015 15.7 0.2 1 1 3.9e-06 0.017 15.5 0.2 5 43 10 52 6 55 0.69 Bacteriophage holin of superfamily 6 (Holin_LLH) TMEM151 PF14857.6 428 CP020479_00028 - 56 0.029 13.3 0.0 1 1 6.9e-06 0.031 13.2 0.0 68 100 10 42 7 54 0.83 TMEM151 family Mlo PF03094.15 479 CP020479_00028 - 56 0.033 12.6 0.2 1 1 7.9e-06 0.035 12.5 0.2 12 54 12 54 6 56 0.90 Mlo family Na_Ala_symp PF01235.17 393 CP020479_00028 - 56 0.047 13.0 0.0 1 1 1.2e-05 0.053 12.8 0.0 350 390 6 46 2 48 0.90 Sodium:alanine symporter family Yae1_N PF09811.9 39 CP020479_00029 - 215 0.42 10.3 4.8 1 2 8.5e-06 0.15 11.8 2.0 15 34 34 53 33 58 0.59 Essential protein Yae1, N terminal Yae1_N PF09811.9 39 CP020479_00029 - 215 0.42 10.3 4.8 2 2 0.68 1.2e+04 -3.9 0.0 30 35 70 75 69 76 0.72 Essential protein Yae1, N terminal DUF4234 PF14018.6 70 CP020479_00030 - 86 0.033 14.3 1.1 1 2 2.7e-06 0.049 13.8 0.6 42 69 9 36 1 37 0.79 Domain of unknown function (DUF4234) DUF4234 PF14018.6 70 CP020479_00030 - 86 0.033 14.3 1.1 2 2 0.18 3.2e+03 -1.7 0.0 25 37 41 53 38 74 0.61 Domain of unknown function (DUF4234) Ribosomal_L44 PF00935.19 76 CP020479_00031 - 128 0.1 13.1 0.6 1 3 5.8e-06 0.1 13.1 0.6 34 73 5 44 3 45 0.90 Ribosomal protein L44 Ribosomal_L44 PF00935.19 76 CP020479_00031 - 128 0.1 13.1 0.6 2 3 0.28 5.1e+03 -2.0 0.0 53 64 65 76 62 80 0.58 Ribosomal protein L44 Ribosomal_L44 PF00935.19 76 CP020479_00031 - 128 0.1 13.1 0.6 3 3 0.33 5.8e+03 -2.2 1.0 39 51 83 95 68 98 0.60 Ribosomal protein L44 Imm8 PF15586.6 114 CP020479_00032 - 373 0.034 14.2 0.8 1 2 0.86 3.8e+03 -2.1 0.0 5 33 100 128 98 136 0.73 Immunity protein 8 Imm8 PF15586.6 114 CP020479_00032 - 373 0.034 14.2 0.8 2 2 3e-05 0.14 12.2 0.1 25 95 299 368 276 371 0.83 Immunity protein 8 Orthopox_F7 PF05813.12 80 CP020479_00032 - 373 0.057 13.5 0.0 1 1 3.8e-05 0.17 12.0 0.0 7 67 96 156 91 164 0.79 Orthopoxvirus F7 protein PYST-C1 PF09690.10 55 CP020479_00032 - 373 1.1 9.0 7.2 1 1 0.00061 2.7 7.8 7.2 7 42 219 254 216 265 0.81 Plasmodium yoelii subtelomeric region (PYST-C1) T3SSipB PF16535.5 155 CP020479_00032 - 373 4.3 7.8 13.9 1 2 0.18 8.2e+02 0.4 0.0 123 150 7 34 2 38 0.83 Type III cell invasion protein SipB T3SSipB PF16535.5 155 CP020479_00032 - 373 4.3 7.8 13.9 2 2 0.00092 4.1 7.9 10.1 46 151 253 355 216 367 0.69 Type III cell invasion protein SipB Remorin_C PF03763.13 107 CP020479_00033 - 220 0.76 9.7 6.9 1 3 0.0025 44 4.0 0.0 60 80 6 26 3 46 0.82 Remorin, C-terminal region Remorin_C PF03763.13 107 CP020479_00033 - 220 0.76 9.7 6.9 2 3 0.00016 2.8 7.9 0.4 23 53 116 147 115 155 0.77 Remorin, C-terminal region Remorin_C PF03763.13 107 CP020479_00033 - 220 0.76 9.7 6.9 3 3 0.052 9.3e+02 -0.2 0.4 28 43 187 202 174 213 0.40 Remorin, C-terminal region Corona_NS3b PF03053.14 226 CP020479_00034 - 101 0.0098 15.7 0.2 1 1 2.6e-06 0.011 15.5 0.2 29 80 19 71 10 82 0.78 ORF3b coronavirus protein DUF5058 PF16481.5 222 CP020479_00034 - 101 0.042 13.6 0.2 1 1 9.8e-06 0.044 13.5 0.2 132 210 8 87 1 90 0.70 Domain of unknown function (DUF5058) MscS_TM PF12794.7 339 CP020479_00034 - 101 0.052 12.4 0.0 1 1 1.3e-05 0.06 12.2 0.0 124 189 29 93 13 100 0.77 Mechanosensitive ion channel inner membrane domain 1 MBOAT_2 PF13813.6 83 CP020479_00034 - 101 0.061 13.6 0.1 1 1 1.8e-05 0.083 13.2 0.1 21 73 30 82 29 91 0.86 Membrane bound O-acyl transferase family ETRAMP PF09716.10 83 CP020479_00035 - 52 0.021 14.9 0.2 1 1 1.3e-06 0.024 14.7 0.2 4 38 11 44 9 51 0.78 Malarial early transcribed membrane protein (ETRAMP) Baculo_PEP_C PF04513.12 140 CP020479_00037 - 164 0.19 11.8 7.2 1 1 1.6e-05 0.29 11.2 7.2 25 128 10 111 2 128 0.57 Baculovirus polyhedron envelope protein, PEP, C terminus Cytochrom_B558a PF05038.13 184 CP020479_00038 - 92 0.0086 15.7 0.0 1 1 1.1e-06 0.0099 15.5 0.0 14 66 35 87 22 91 0.85 Cytochrome Cytochrome b558 alpha-subunit DUF3040 PF11239.8 84 CP020479_00038 - 92 0.3 11.4 1.4 1 2 3.7e-05 0.33 11.2 0.3 40 82 29 65 14 70 0.72 Protein of unknown function (DUF3040) DUF3040 PF11239.8 84 CP020479_00038 - 92 0.3 11.4 1.4 2 2 0.52 4.7e+03 -2.0 0.0 8 16 79 87 75 88 0.80 Protein of unknown function (DUF3040) DUF746 PF05344.11 64 CP020479_00039 - 54 0.045 13.6 0.0 1 1 2.6e-06 0.046 13.5 0.0 2 48 6 52 5 54 0.92 Domain of Unknown Function (DUF746) Tetraspanin PF00335.20 229 CP020479_00041 - 54 0.022 14.5 0.0 1 1 5.1e-06 0.023 14.4 0.0 78 107 6 37 2 52 0.75 Tetraspanin family Saf_2TM PF18303.1 152 CP020479_00041 - 54 0.041 13.5 0.0 1 1 1e-05 0.045 13.3 0.0 67 99 10 41 2 47 0.78 SAVED-fused 2TM effector domain OPA3 PF07047.12 125 CP020479_00041 - 54 0.075 12.8 0.0 1 1 2.1e-05 0.095 12.5 0.0 82 115 18 51 14 53 0.90 Optic atrophy 3 protein (OPA3) LapA_dom PF06305.11 64 CP020479_00041 - 54 0.078 12.8 0.1 1 1 2.4e-05 0.11 12.4 0.1 20 61 11 49 5 52 0.64 Lipopolysaccharide assembly protein A domain CPSase_L_D2 PF02786.17 211 CP020479_00042 - 222 0.0071 15.9 0.3 1 1 2.7e-06 0.0097 15.4 0.3 58 155 40 147 36 182 0.83 Carbamoyl-phosphate synthase L chain, ATP binding domain AAA_23 PF13476.6 200 CP020479_00042 - 222 0.074 13.6 6.5 1 1 2.8e-05 0.1 13.1 6.0 60 179 68 211 29 222 0.73 AAA domain PBECR3 PF18812.1 115 CP020479_00042 - 222 0.19 11.7 6.8 1 2 2.2e-05 0.079 12.9 3.5 36 98 33 92 27 104 0.77 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 PBECR3 PF18812.1 115 CP020479_00042 - 222 0.19 11.7 6.8 2 2 0.57 2e+03 -1.3 0.0 45 64 134 152 100 166 0.74 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 RecG_N PF17190.4 89 CP020479_00042 - 222 0.29 11.9 3.6 1 2 0.29 1e+03 0.5 0.2 16 39 38 61 28 81 0.68 RecG N-terminal helical domain RecG_N PF17190.4 89 CP020479_00042 - 222 0.29 11.9 3.6 2 2 0.00011 0.38 11.5 0.4 7 50 170 212 166 218 0.78 RecG N-terminal helical domain DUF5301 PF17225.3 97 CP020479_00042 - 222 4.5 7.8 8.1 1 3 0.4 1.4e+03 -0.3 0.1 29 44 39 54 23 83 0.73 Domain of unknown function (DUF5300) DUF5301 PF17225.3 97 CP020479_00042 - 222 4.5 7.8 8.1 2 3 0.0049 18 5.9 0.1 60 95 90 125 79 127 0.87 Domain of unknown function (DUF5300) DUF5301 PF17225.3 97 CP020479_00042 - 222 4.5 7.8 8.1 3 3 0.011 40 4.7 1.3 18 58 168 209 153 222 0.72 Domain of unknown function (DUF5300) Tape_meas_lam_C PF09718.10 76 CP020479_00043 - 123 0.12 12.5 0.3 1 1 1.1e-05 0.19 11.9 0.3 23 59 76 113 72 116 0.86 Lambda phage tail tape-measure protein (Tape_meas_lam_C) SLT PF01464.20 117 CP020479_00044 - 187 3.3e-14 52.5 0.1 1 1 2.7e-18 4.8e-14 52.0 0.1 4 98 29 163 26 174 0.93 Transglycosylase SLT domain MFS_Mycoplasma PF07672.13 274 CP020479_00046 - 51 0.0037 16.6 0.3 1 1 1e-06 0.0037 16.6 0.3 37 82 4 49 1 51 0.85 Mycoplasma MFS transporter OSTMP1 PF09777.9 234 CP020479_00046 - 51 0.0094 15.4 0.1 1 1 2.6e-06 0.0094 15.4 0.1 188 226 5 47 1 51 0.74 Osteopetrosis-associated transmembrane protein 1 precursor DUF3139 PF11337.8 83 CP020479_00046 - 51 0.0097 16.5 0.6 1 1 3.4e-06 0.012 16.2 0.6 6 48 4 46 2 50 0.78 Protein of unknown function (DUF3139) ATP-synt_8 PF00895.20 55 CP020479_00046 - 51 0.07 13.6 1.9 1 1 2.5e-05 0.088 13.3 1.9 5 49 3 46 3 50 0.72 ATP synthase protein 8 Presenilin PF01080.17 398 CP020479_00046 - 51 1 8.0 3.9 1 1 0.00026 0.93 8.2 3.3 89 117 3 31 1 40 0.90 Presenilin PBECR3 PF18812.1 115 CP020479_00047 - 176 0.051 13.5 3.0 1 1 4.8e-06 0.087 12.8 3.0 20 84 14 78 2 103 0.80 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 AAA_10 PF12846.7 362 CP020479_00049 - 778 1.5e-05 24.1 0.1 1 2 0.0034 21 3.9 0.0 20 45 372 397 366 442 0.89 AAA-like domain AAA_10 PF12846.7 362 CP020479_00049 - 778 1.5e-05 24.1 0.1 2 2 2.1e-07 0.0012 17.8 0.0 245 303 659 716 643 749 0.78 AAA-like domain AAA_22 PF13401.6 137 CP020479_00049 - 778 0.17 12.2 0.9 1 3 0.00087 5.2 7.3 0.0 8 29 376 397 373 421 0.87 AAA domain AAA_22 PF13401.6 137 CP020479_00049 - 778 0.17 12.2 0.9 2 3 1.4 8.3e+03 -3.0 0.1 40 66 510 537 485 547 0.61 AAA domain AAA_22 PF13401.6 137 CP020479_00049 - 778 0.17 12.2 0.9 3 3 0.033 2e+02 2.2 0.0 25 104 584 667 581 714 0.68 AAA domain DUF87 PF01935.17 227 CP020479_00049 - 778 0.91 9.6 9.9 1 2 0.72 4.3e+03 -2.5 0.1 165 221 239 294 234 298 0.79 Helicase HerA, central domain DUF87 PF01935.17 227 CP020479_00049 - 778 0.91 9.6 9.9 2 2 0.00017 1 9.4 5.2 19 53 369 402 359 602 0.71 Helicase HerA, central domain HTH_Crp_2 PF13545.6 68 CP020479_00050 - 281 0.0016 18.4 0.2 1 1 2e-06 0.0059 16.6 0.1 23 55 83 115 51 126 0.85 Crp-like helix-turn-helix domain GntR PF00392.21 64 CP020479_00050 - 281 0.0078 15.8 0.1 1 1 6.5e-06 0.019 14.6 0.1 29 61 86 118 83 121 0.94 Bacterial regulatory proteins, gntR family Phage_rep_O PF04492.13 95 CP020479_00050 - 281 0.035 14.7 0.1 1 1 3e-05 0.091 13.4 0.1 22 85 51 117 43 122 0.82 Bacteriophage replication protein O Utp11 PF03998.13 245 CP020479_00050 - 281 0.039 13.9 8.7 1 1 2.2e-05 0.067 13.1 8.7 90 216 145 271 128 281 0.61 Utp11 protein DUF5359 PF17313.2 56 CP020479_00050 - 281 0.048 13.6 0.1 1 1 3.7e-05 0.11 12.5 0.1 26 53 150 177 146 179 0.88 Family of unknown function (DUF5359) DUF1413 PF07205.11 69 CP020479_00050 - 281 0.062 13.3 1.4 1 2 7.7e-05 0.23 11.5 0.0 20 57 127 165 119 176 0.84 Domain of unknown function (DUF1413) DUF1413 PF07205.11 69 CP020479_00050 - 281 0.062 13.3 1.4 2 2 0.35 1.1e+03 -0.2 0.3 6 21 235 250 231 271 0.60 Domain of unknown function (DUF1413) HLH PF00010.26 53 CP020479_00051 - 139 0.12 12.3 1.8 1 2 7.9e-06 0.14 12.1 0.6 15 47 67 99 66 100 0.94 Helix-loop-helix DNA-binding domain HLH PF00010.26 53 CP020479_00051 - 139 0.12 12.3 1.8 2 2 0.26 4.7e+03 -2.3 0.0 17 35 117 134 110 135 0.68 Helix-loop-helix DNA-binding domain O-antigen_lig PF13425.6 468 CP020479_00052 - 126 1.7e-06 27.1 2.5 1 1 6.9e-10 2.1e-06 26.8 2.5 216 335 8 118 7 124 0.63 O-antigen ligase like membrane protein CLN3 PF02487.17 398 CP020479_00052 - 126 0.00068 18.8 0.1 1 1 2.5e-07 0.00074 18.7 0.1 140 223 34 116 5 126 0.43 CLN3 protein TMEM171 PF15471.6 320 CP020479_00052 - 126 0.031 13.3 0.0 1 1 1.4e-05 0.04 12.9 0.0 153 204 33 91 23 99 0.75 Transmembrane protein family 171 Connexin PF00029.19 234 CP020479_00052 - 126 0.061 13.1 0.4 1 1 3e-05 0.089 12.5 0.4 78 146 42 111 36 125 0.44 Connexin DUF4834 PF16118.5 99 CP020479_00052 - 126 0.39 11.7 9.4 1 1 0.0007 2.1 9.4 9.4 8 80 41 112 8 122 0.73 Domain of unknown function (DUF4834) DUF4355 PF14265.6 125 CP020479_00052 - 126 0.51 10.6 11.2 1 1 0.00023 0.7 10.1 11.2 30 82 68 121 62 125 0.65 Domain of unknown function (DUF4355) AAA PF00004.29 132 CP020479_00053 - 410 4.6e-15 56.2 0.0 1 1 4.9e-18 8e-15 55.4 0.0 2 131 164 300 163 301 0.88 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 138 CP020479_00053 - 410 1.1e-05 25.5 0.0 1 1 1.5e-08 2.5e-05 24.3 0.0 2 102 163 267 162 290 0.78 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 137 CP020479_00053 - 410 2.8e-05 24.4 0.2 1 1 3.1e-06 0.0051 17.1 0.2 5 132 160 276 155 281 0.83 AAA domain AAA_14 PF13173.6 131 CP020479_00053 - 410 6.1e-05 23.1 0.2 1 2 1.9 3.2e+03 -1.9 0.0 107 116 27 36 9 76 0.54 AAA domain AAA_14 PF13173.6 131 CP020479_00053 - 410 6.1e-05 23.1 0.2 2 2 1.2e-07 0.0002 21.4 0.0 4 77 162 236 159 307 0.77 AAA domain DUF815 PF05673.13 250 CP020479_00053 - 410 0.00029 20.1 0.0 1 1 2.8e-07 0.00046 19.4 0.0 24 116 131 232 116 275 0.85 Protein of unknown function (DUF815) AAA_2 PF07724.14 171 CP020479_00053 - 410 0.0015 18.7 0.0 1 1 1.7e-06 0.0028 17.8 0.0 6 87 163 238 159 280 0.76 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 143 CP020479_00053 - 410 0.011 15.9 0.0 1 1 1.3e-05 0.021 15.0 0.0 2 87 163 295 163 312 0.81 AAA domain RuvB_N PF05496.12 159 CP020479_00053 - 410 0.028 14.2 0.0 1 1 4e-05 0.065 13.0 0.0 3 93 131 224 130 242 0.69 Holliday junction DNA helicase RuvB P-loop domain DUF2120 PF09893.9 136 CP020479_00053 - 410 0.042 14.0 0.2 1 2 9.5e-05 0.15 12.1 0.0 38 87 199 244 186 272 0.76 Uncharacterized protein conserved in archaea (DUF2120) DUF2120 PF09893.9 136 CP020479_00053 - 410 0.042 14.0 0.2 2 2 2.1 3.4e+03 -2.0 0.0 66 94 365 401 335 406 0.65 Uncharacterized protein conserved in archaea (DUF2120) AAA_16 PF13191.6 170 CP020479_00053 - 410 0.099 13.0 0.0 1 2 0.0019 3.1 8.2 0.0 24 51 159 187 145 219 0.75 AAA ATPase domain AAA_16 PF13191.6 170 CP020479_00053 - 410 0.099 13.0 0.0 2 2 0.081 1.3e+02 2.8 0.0 127 163 210 255 193 262 0.68 AAA ATPase domain TniB PF05621.11 189 CP020479_00053 - 410 0.19 11.1 1.1 1 3 0.11 1.8e+02 1.4 0.0 26 93 29 96 18 124 0.72 Bacterial TniB protein TniB PF05621.11 189 CP020479_00053 - 410 0.19 11.1 1.1 2 3 0.2 3.2e+02 0.6 0.0 30 56 155 181 140 188 0.76 Bacterial TniB protein TniB PF05621.11 189 CP020479_00053 - 410 0.19 11.1 1.1 3 3 0.0049 7.9 5.8 0.1 122 157 226 261 177 276 0.82 Bacterial TniB protein YopX PF09643.10 131 CP020479_00054 - 125 1.5e-12 47.7 2.9 1 1 1e-16 1.9e-12 47.4 2.9 49 130 34 123 3 124 0.69 YopX protein Telomere_reg-2 PF10193.9 109 CP020479_00056 - 214 0.13 12.7 0.6 1 2 0.0063 1.1e+02 3.3 0.1 4 67 5 71 3 84 0.79 Telomere length regulation protein Telomere_reg-2 PF10193.9 109 CP020479_00056 - 214 0.13 12.7 0.6 2 2 0.0003 5.5 7.5 0.0 7 34 183 210 181 214 0.92 Telomere length regulation protein Snapin_Pallidin PF14712.6 90 CP020479_00062 - 258 0.79 10.2 7.9 1 2 0.00059 11 6.6 0.4 31 71 8 48 5 63 0.77 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 CP020479_00062 - 258 0.79 10.2 7.9 2 2 0.0006 11 6.6 2.0 13 66 204 257 199 258 0.87 Snapin/Pallidin Topoisom_bac PF01131.20 413 CP020479_00063 - 723 3.7e-97 325.9 2.9 1 1 4.8e-100 4.8e-97 325.6 2.9 3 413 154 591 152 591 0.93 DNA topoisomerase Toprim PF01751.22 103 CP020479_00063 - 723 1.2e-11 44.8 0.4 1 2 5.6e-14 5.6e-11 42.6 0.1 1 100 2 133 2 136 0.85 Toprim domain Toprim PF01751.22 103 CP020479_00063 - 723 1.2e-11 44.8 0.4 2 2 5.4 5.4e+03 -2.3 0.0 61 77 497 513 457 516 0.65 Toprim domain zf-C4_Topoisom PF01396.19 39 CP020479_00063 - 723 2.3e-07 30.5 20.4 1 2 1e-06 0.001 18.8 4.6 2 32 619 651 618 657 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP020479_00063 - 723 2.3e-07 30.5 20.4 2 2 3.4e-06 0.0034 17.1 7.9 3 37 674 713 672 715 0.85 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP020479_00063 - 723 0.00043 20.5 0.2 1 2 0.0039 3.9 7.8 0.0 18 34 615 631 610 632 0.78 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP020479_00063 - 723 0.00043 20.5 0.2 2 2 0.00069 0.69 10.2 0.0 20 32 671 683 661 685 0.78 zinc-ribbon Zn_ribbon_SprT PF17283.2 38 CP020479_00063 - 723 0.015 15.2 1.1 1 2 0.46 4.6e+02 0.8 0.1 7 13 621 627 614 632 0.64 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 CP020479_00063 - 723 0.015 15.2 1.1 2 2 0.00011 0.11 12.4 0.2 4 27 672 699 669 704 0.93 SprT-like zinc ribbon domain Toprim_2 PF13155.6 90 CP020479_00063 - 723 0.054 13.9 0.2 1 2 0.0011 1.1 9.7 0.1 37 74 91 130 83 154 0.79 Toprim-like Toprim_2 PF13155.6 90 CP020479_00063 - 723 0.054 13.9 0.2 2 2 0.51 5.1e+02 1.2 0.0 33 58 488 513 465 516 0.78 Toprim-like Zn-ribbon_8 PF09723.10 40 CP020479_00063 - 723 0.082 13.0 0.7 1 2 0.035 35 4.6 0.0 18 34 609 626 603 632 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP020479_00063 - 723 0.082 13.0 0.7 2 2 0.012 11 6.2 0.1 5 21 672 688 665 693 0.77 Zinc ribbon domain zinc_ribbon_4 PF13717.6 36 CP020479_00063 - 723 0.1 12.5 2.3 1 2 0.018 18 5.3 0.2 2 12 618 628 618 629 0.85 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP020479_00063 - 723 0.1 12.5 2.3 2 2 0.011 11 6.1 0.1 4 17 674 687 672 694 0.84 zinc-ribbon domain Toprim_4 PF13662.6 89 CP020479_00063 - 723 0.1 13.1 0.1 1 2 0.00068 0.68 10.4 0.0 49 76 89 120 69 132 0.72 Toprim domain Toprim_4 PF13662.6 89 CP020479_00063 - 723 0.1 13.1 0.1 2 2 4.2 4.2e+03 -1.7 0.0 28 68 481 513 470 515 0.70 Toprim domain zf-ribbon_3 PF13248.6 26 CP020479_00063 - 723 0.18 11.3 1.0 1 2 0.013 12 5.4 0.1 2 11 618 628 617 633 0.74 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP020479_00063 - 723 0.18 11.3 1.0 2 2 0.04 40 3.8 0.1 1 8 671 678 671 687 0.83 zinc-ribbon domain HTH_34 PF13601.6 80 CP020479_00063 - 723 0.25 11.6 1.1 1 2 3.4 3.4e+03 -1.7 0.1 46 63 465 482 463 495 0.75 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP020479_00063 - 723 0.25 11.6 1.1 2 2 0.00077 0.77 10.0 0.1 32 57 524 549 519 558 0.84 Winged helix DNA-binding domain TRAF6_Z2 PF18048.1 27 CP020479_00063 - 723 0.45 10.7 3.7 1 3 1.7 1.7e+03 -0.8 0.0 18 25 264 271 262 272 0.85 TNF receptor-associated factor 6 zinc finger 2 TRAF6_Z2 PF18048.1 27 CP020479_00063 - 723 0.45 10.7 3.7 2 3 2 2e+03 -1.0 0.0 5 10 620 625 618 628 0.81 TNF receptor-associated factor 6 zinc finger 2 TRAF6_Z2 PF18048.1 27 CP020479_00063 - 723 0.45 10.7 3.7 3 3 0.0012 1.1 9.4 0.4 5 13 674 682 671 684 0.89 TNF receptor-associated factor 6 zinc finger 2 Zn_Tnp_IS1 PF03811.13 35 CP020479_00063 - 723 0.48 10.2 3.3 1 2 0.073 73 3.2 0.2 6 12 619 625 617 627 0.88 InsA N-terminal domain Zn_Tnp_IS1 PF03811.13 35 CP020479_00063 - 723 0.48 10.2 3.3 2 2 0.0051 5.1 6.9 0.4 7 33 674 701 672 703 0.89 InsA N-terminal domain zf-HIT PF04438.16 30 CP020479_00063 - 723 0.61 10.0 4.2 1 2 0.048 47 4.0 0.3 11 23 616 628 614 643 0.83 HIT zinc finger zf-HIT PF04438.16 30 CP020479_00063 - 723 0.61 10.0 4.2 2 2 0.006 5.9 6.8 0.4 11 20 670 679 667 682 0.86 HIT zinc finger zf_C2H2_10 PF18414.1 26 CP020479_00063 - 723 2.6 7.7 7.4 1 2 0.011 11 5.7 1.3 4 10 620 626 618 628 0.85 C2H2 type zinc-finger zf_C2H2_10 PF18414.1 26 CP020479_00063 - 723 2.6 7.7 7.4 2 2 0.025 25 4.5 0.5 2 9 672 679 671 681 0.88 C2H2 type zinc-finger PIN_4 PF13638.6 131 CP020479_00063 - 723 4 7.7 5.5 1 3 3.4 3.4e+03 -1.7 0.0 28 64 204 241 200 277 0.52 PIN domain PIN_4 PF13638.6 131 CP020479_00063 - 723 4 7.7 5.5 2 3 0.00089 0.89 9.8 0.5 60 126 470 554 442 558 0.79 PIN domain PIN_4 PF13638.6 131 CP020479_00063 - 723 4 7.7 5.5 3 3 9 8.9e+03 -3.1 0.1 79 91 607 619 574 620 0.47 PIN domain PADR1 PF08063.12 53 CP020479_00063 - 723 7.7 6.4 8.1 1 2 0.0096 9.6 6.1 1.7 15 50 620 656 619 658 0.80 PADR1 (NUC008) domain PADR1 PF08063.12 53 CP020479_00063 - 723 7.7 6.4 8.1 2 2 0.069 69 3.3 0.6 15 28 674 687 673 702 0.82 PADR1 (NUC008) domain zf-H2C2_2 PF13465.6 26 CP020479_00063 - 723 7.8 7.1 8.1 1 2 0.068 67 4.2 0.1 9 24 613 628 609 630 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP020479_00063 - 723 7.8 7.1 8.1 2 2 0.012 12 6.5 0.7 11 24 669 682 665 683 0.82 Zinc-finger double domain CoA_transf_3 PF02515.17 368 CP020479_00064 - 440 0.18 10.9 0.4 1 1 1.5e-05 0.28 10.3 0.4 247 299 258 315 253 351 0.76 CoA-transferase family III Tfb5 PF06331.12 68 CP020479_00065 - 198 1.7 8.7 7.2 1 2 0.0015 26 4.9 0.9 14 61 38 88 35 91 0.81 Transcription factor TFIIH complex subunit Tfb5 Tfb5 PF06331.12 68 CP020479_00065 - 198 1.7 8.7 7.2 2 2 0.00028 5.1 7.2 0.7 23 66 138 181 130 183 0.83 Transcription factor TFIIH complex subunit Tfb5 DUF3042 PF11240.8 54 CP020479_00066 - 790 8.3 6.5 6.1 1 2 0.01 1.9e+02 2.2 1.4 7 26 603 622 601 625 0.89 Protein of unknown function (DUF3042) DUF3042 PF11240.8 54 CP020479_00066 - 790 8.3 6.5 6.1 2 2 0.001 18 5.4 0.2 3 27 728 752 726 756 0.92 Protein of unknown function (DUF3042) DUF2368 PF10166.9 134 CP020479_00067 - 106 0.59 9.7 2.9 1 2 0.16 1.5e+03 -1.2 0.1 56 77 20 40 12 67 0.70 Uncharacterised conserved protein (DUF2368) DUF2368 PF10166.9 134 CP020479_00067 - 106 0.59 9.7 2.9 2 2 4e-05 0.35 10.5 1.0 79 99 78 98 47 101 0.78 Uncharacterised conserved protein (DUF2368) Herpes_UL73 PF03554.13 75 CP020479_00067 - 106 2.6 8.1 10.4 1 2 0.027 2.4e+02 1.8 0.3 51 72 17 38 8 40 0.76 UL73 viral envelope glycoprotein Herpes_UL73 PF03554.13 75 CP020479_00067 - 106 2.6 8.1 10.4 2 2 8.9e-05 0.79 9.8 4.6 36 69 68 101 53 105 0.89 UL73 viral envelope glycoprotein GLF PF03275.13 204 CP020479_00069 - 315 0.021 14.5 1.0 1 3 0.38 2.3e+03 -1.9 0.0 134 146 77 89 37 110 0.62 UDP-galactopyranose mutase GLF PF03275.13 204 CP020479_00069 - 315 0.021 14.5 1.0 2 3 0.26 1.6e+03 -1.4 0.0 125 158 142 175 129 218 0.74 UDP-galactopyranose mutase GLF PF03275.13 204 CP020479_00069 - 315 0.021 14.5 1.0 3 3 3.5e-06 0.021 14.5 1.0 78 147 228 302 208 312 0.84 UDP-galactopyranose mutase HTH_57 PF18679.1 108 CP020479_00069 - 315 0.051 13.9 0.3 1 2 0.44 2.6e+03 -1.3 0.3 45 82 142 178 110 185 0.66 ThcOx helix turn helix domain HTH_57 PF18679.1 108 CP020479_00069 - 315 0.051 13.9 0.3 2 2 8.6e-06 0.051 13.9 0.3 9 60 256 307 253 312 0.93 ThcOx helix turn helix domain DUF349 PF03993.12 75 CP020479_00069 - 315 3.7 7.9 13.9 1 3 0.0047 28 5.1 0.4 9 33 50 74 48 77 0.92 Domain of Unknown Function (DUF349) DUF349 PF03993.12 75 CP020479_00069 - 315 3.7 7.9 13.9 2 3 0.031 1.9e+02 2.4 3.9 19 46 101 128 93 165 0.79 Domain of Unknown Function (DUF349) DUF349 PF03993.12 75 CP020479_00069 - 315 3.7 7.9 13.9 3 3 0.0061 36 4.7 0.1 13 33 237 257 235 270 0.92 Domain of Unknown Function (DUF349) DUF1192 PF06698.11 58 CP020479_00071 - 314 5.1 7.2 15.9 1 3 0.047 8.4e+02 0.1 0.4 3 24 24 45 21 55 0.74 Protein of unknown function (DUF1192) DUF1192 PF06698.11 58 CP020479_00071 - 314 5.1 7.2 15.9 2 3 8.9e-06 0.16 12.0 0.4 13 50 136 173 124 175 0.80 Protein of unknown function (DUF1192) DUF1192 PF06698.11 58 CP020479_00071 - 314 5.1 7.2 15.9 3 3 0.012 2.1e+02 2.0 3.2 14 51 240 277 226 278 0.79 Protein of unknown function (DUF1192) Peptidase_C101 PF16218.5 265 CP020479_00072 - 187 0.00027 20.3 6.7 1 2 4.5e-08 0.00027 20.3 6.7 87 198 40 150 9 155 0.85 Peptidase family C101 Peptidase_C101 PF16218.5 265 CP020479_00072 - 187 0.00027 20.3 6.7 2 2 0.0096 58 2.8 0.5 102 147 139 179 119 183 0.74 Peptidase family C101 HTH_45 PF14947.6 77 CP020479_00072 - 187 0.029 14.3 1.2 1 1 1e-05 0.063 13.3 1.0 11 48 8 44 6 74 0.83 Winged helix-turn-helix CLAMP PF14769.6 99 CP020479_00072 - 187 0.086 13.3 4.7 1 2 0.026 1.5e+02 2.9 0.1 41 73 67 100 31 104 0.74 Flagellar C1a complex subunit C1a-32 CLAMP PF14769.6 99 CP020479_00072 - 187 0.086 13.3 4.7 2 2 4.3e-05 0.26 11.8 1.2 4 65 110 173 107 180 0.80 Flagellar C1a complex subunit C1a-32 DUF2232 PF09991.9 290 CP020479_00074 - 80 0.046 12.9 0.4 1 1 3e-06 0.053 12.7 0.4 99 156 6 60 1 65 0.68 Predicted membrane protein (DUF2232) Thioredoxin_2 PF13098.6 109 CP020479_00075 - 289 5.6e-06 26.8 2.9 1 2 1.5 4.6e+03 -1.9 0.0 27 47 74 93 49 118 0.62 Thioredoxin-like domain Thioredoxin_2 PF13098.6 109 CP020479_00075 - 289 5.6e-06 26.8 2.9 2 2 2.9e-09 8.6e-06 26.2 1.5 3 76 177 273 175 285 0.67 Thioredoxin-like domain Thioredoxin_4 PF13462.6 166 CP020479_00075 - 289 0.00015 22.0 2.1 1 2 0.12 3.6e+02 1.2 0.1 65 122 11 88 6 110 0.43 Thioredoxin Thioredoxin_4 PF13462.6 166 CP020479_00075 - 289 0.00015 22.0 2.1 2 2 2e-07 0.0006 20.0 0.2 16 103 182 264 174 278 0.74 Thioredoxin Glutaredoxin PF00462.24 60 CP020479_00075 - 289 0.0022 18.2 0.3 1 1 3.1e-06 0.0094 16.2 0.3 3 43 185 230 183 237 0.82 Glutaredoxin Thioredoxin_3 PF13192.6 76 CP020479_00075 - 289 0.0074 16.3 0.1 1 2 1.8e-05 0.055 13.5 0.0 5 42 185 224 181 229 0.86 Thioredoxin domain Thioredoxin_3 PF13192.6 76 CP020479_00075 - 289 0.0074 16.3 0.1 2 2 0.62 1.8e+03 -1.0 0.0 34 51 264 282 254 283 0.73 Thioredoxin domain HypD PF01924.16 351 CP020479_00075 - 289 0.061 12.4 0.0 1 1 3.2e-05 0.096 11.7 0.0 45 108 182 246 179 262 0.92 Hydrogenase formation hypA family Aminopep PF10023.9 322 CP020479_00075 - 289 3.2 7.0 7.8 1 2 0.051 1.5e+02 1.5 0.9 197 297 23 119 10 148 0.58 Putative aminopeptidase Aminopep PF10023.9 322 CP020479_00075 - 289 3.2 7.0 7.8 2 2 0.00019 0.56 9.5 1.4 249 311 215 277 117 282 0.77 Putative aminopeptidase 4HFCP_synth PF04476.13 228 CP020479_00077 - 215 0.005 16.6 0.1 1 1 2.6e-06 0.0092 15.7 0.1 93 176 129 211 121 213 0.89 4-HFC-P synthase Herpes_U30 PF04523.13 917 CP020479_00077 - 215 0.044 11.7 3.7 1 1 1.4e-05 0.051 11.5 3.7 723 852 19 154 8 180 0.81 Herpes virus tegument protein U30 TT_ORF1 PF02956.14 525 CP020479_00077 - 215 0.14 10.8 2.1 1 1 4e-05 0.14 10.8 2.1 248 360 10 136 1 204 0.76 TT viral orf 1 DUF4776 PF16003.5 503 CP020479_00077 - 215 3.4 6.6 9.6 1 1 0.0011 3.8 6.4 9.0 132 238 23 126 5 151 0.58 Domain of unknown function (DUF4776) LMBR1 PF04791.16 510 CP020479_00077 - 215 4.3 6.1 6.3 1 1 0.0013 4.7 6.0 6.3 193 296 32 147 6 210 0.60 LMBR1-like membrane protein Bacillus_HBL PF05791.11 177 CP020479_00078 - 109 0.03 14.2 1.8 1 1 8.9e-06 0.04 13.8 1.8 84 161 28 108 24 109 0.82 Bacillus haemolytic enterotoxin (HBL) Tape_meas_lam_C PF09718.10 76 CP020479_00078 - 109 0.035 14.2 0.0 1 1 1.1e-05 0.05 13.7 0.0 21 60 16 55 12 65 0.87 Lambda phage tail tape-measure protein (Tape_meas_lam_C) Prefoldin_3 PF13758.6 99 CP020479_00078 - 109 0.042 13.9 1.1 1 1 1.2e-05 0.055 13.5 1.1 17 63 50 100 32 108 0.65 Prefoldin subunit Erf4 PF10256.9 116 CP020479_00078 - 109 0.09 12.9 0.9 1 1 0.00024 1.1 9.4 0.5 67 102 17 54 2 86 0.80 Golgin subfamily A member 7/ERF4 family KAR PF15222.6 103 CP020479_00080 - 148 0.037 14.3 2.6 1 2 0.00085 15 5.9 0.1 9 44 11 48 4 72 0.78 Kidney androgen-regulated KAR PF15222.6 103 CP020479_00080 - 148 0.037 14.3 2.6 2 2 0.00011 2 8.8 0.5 18 66 91 139 78 145 0.72 Kidney androgen-regulated LRAT PF04970.13 127 CP020479_00081 - 75 0.035 14.4 0.0 1 1 2e-06 0.037 14.3 0.0 2 38 10 46 9 72 0.77 Lecithin retinol acyltransferase SNase PF00565.17 108 CP020479_00082 - 200 2.2e-26 92.4 0.3 1 1 1.8e-30 3.2e-26 91.9 0.3 1 108 94 187 94 187 0.96 Staphylococcal nuclease homologue HipA_C PF07804.12 212 CP020479_00084 - 450 1.5e-07 31.3 0.2 1 1 6.7e-11 6e-07 29.4 0.2 18 164 166 308 153 406 0.72 HipA-like C-terminal domain PI3_PI4_kinase PF00454.27 250 CP020479_00084 - 450 0.17 11.7 2.3 1 1 4.8e-05 0.43 10.3 2.3 142 195 262 319 161 372 0.73 Phosphatidylinositol 3- and 4-kinase DUF751 PF05421.11 60 CP020479_00085 - 93 0.0064 17.2 1.2 1 1 1.7e-06 0.0099 16.6 1.2 3 48 26 73 25 77 0.79 Protein of unknown function (DUF751) ThrE PF06738.12 241 CP020479_00085 - 93 0.012 15.1 0.0 1 1 2.2e-06 0.013 14.8 0.0 155 211 27 81 14 84 0.75 Putative threonine/serine exporter Tom22 PF04281.13 138 CP020479_00085 - 93 0.046 13.5 0.1 1 1 1.1e-05 0.067 13.0 0.0 81 126 42 89 29 93 0.77 Mitochondrial import receptor subunit Tom22 Cadherin_C_2 PF16492.5 85 CP020479_00086 - 46 0.11 13.3 0.0 1 1 5.9e-06 0.11 13.3 0.0 1 25 3 27 3 44 0.83 Cadherin cytoplasmic C-terminal RSN1_TM PF13967.6 156 CP020479_00088 - 60 0.039 13.7 0.0 1 1 4.8e-06 0.043 13.6 0.0 8 43 12 46 5 57 0.77 Late exocytosis, associated with Golgi transport Chordopox_A13L PF05961.11 69 CP020479_00088 - 60 0.1 12.8 0.6 1 1 1.4e-05 0.13 12.5 0.6 2 42 6 46 5 58 0.73 Chordopoxvirus A13L protein HipA_C PF07804.12 212 CP020479_00089 - 456 2.2e-32 112.5 0.3 1 1 2e-36 3.7e-32 111.8 0.3 1 188 126 321 126 346 0.83 HipA-like C-terminal domain Fic PF02661.18 97 CP020479_00090 - 247 1.1e-18 67.9 0.7 1 2 1 1.8e+04 -3.4 0.1 68 79 23 34 6 35 0.64 Fic/DOC family Fic PF02661.18 97 CP020479_00090 - 247 1.1e-18 67.9 0.7 2 2 1.2e-22 2.1e-18 67.0 0.1 1 93 87 176 87 179 0.95 Fic/DOC family NPV_P10 PF05531.12 75 CP020479_00091 - 99 0.034 14.6 0.3 1 1 1e-05 0.046 14.2 0.3 31 67 32 66 10 77 0.81 Nucleopolyhedrovirus P10 protein DUF1246 PF06849.12 122 CP020479_00091 - 99 0.092 12.7 0.0 1 1 2.5e-05 0.11 12.4 0.0 24 83 21 85 16 94 0.84 Protein of unknown function (DUF1246) DivIC PF04977.15 80 CP020479_00091 - 99 0.1 12.4 1.7 1 1 3.1e-05 0.14 11.9 1.7 27 77 41 92 13 95 0.67 Septum formation initiator HALZ PF02183.18 43 CP020479_00091 - 99 0.25 11.6 7.0 1 2 8.3e-05 0.37 11.0 2.7 16 40 42 66 41 69 0.79 Homeobox associated leucine zipper HALZ PF02183.18 43 CP020479_00091 - 99 0.25 11.6 7.0 2 2 0.0014 6.2 7.1 2.1 9 29 56 76 55 88 0.86 Homeobox associated leucine zipper TraG-D_C PF12696.7 126 CP020479_00092 - 611 4.2e-10 39.7 0.1 1 2 3.3 1e+04 -3.5 0.0 44 78 229 263 228 264 0.70 TraM recognition site of TraD and TraG TraG-D_C PF12696.7 126 CP020479_00092 - 611 4.2e-10 39.7 0.1 2 2 3.3e-13 9.7e-10 38.5 0.0 1 125 419 541 419 542 0.87 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP020479_00092 - 611 5.1e-06 25.7 0.3 1 3 3.3e-06 0.01 14.8 0.1 9 54 126 171 119 189 0.88 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP020479_00092 - 611 5.1e-06 25.7 0.3 2 3 0.62 1.9e+03 -2.5 0.0 104 132 226 254 215 284 0.63 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP020479_00092 - 611 5.1e-06 25.7 0.3 3 3 0.00041 1.2 7.9 0.0 216 367 392 542 367 557 0.71 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP020479_00092 - 611 6.5e-06 26.4 0.2 1 1 5.8e-09 1.7e-05 25.0 0.2 13 129 123 247 107 326 0.67 Helicase HerA, central domain AAA_10 PF12846.7 362 CP020479_00092 - 611 9.1e-06 24.8 0.0 1 1 5.6e-09 1.7e-05 24.0 0.0 19 94 130 209 122 267 0.80 AAA-like domain DUF853 PF05872.12 504 CP020479_00092 - 611 0.0066 15.1 0.0 1 1 3.4e-06 0.01 14.5 0.0 5 59 116 170 112 193 0.91 Bacterial protein of unknown function (DUF853) PAPS_reduct PF01507.19 174 CP020479_00092 - 611 0.02 14.9 0.1 1 1 1.6e-05 0.049 13.7 0.1 11 72 454 522 452 568 0.79 Phosphoadenosine phosphosulfate reductase family CSM2 PF16834.5 200 CP020479_00093 - 173 0.031 13.9 1.4 1 2 0.25 1.5e+03 -1.4 0.1 152 175 16 39 8 62 0.52 Shu complex component Csm2, DNA-binding CSM2 PF16834.5 200 CP020479_00093 - 173 0.031 13.9 1.4 2 2 6.2e-06 0.037 13.7 0.2 70 122 118 170 106 173 0.69 Shu complex component Csm2, DNA-binding Ribonuc_red_lgC PF02867.15 524 CP020479_00093 - 173 0.057 11.9 0.5 1 2 0.0046 28 3.1 0.1 136 189 12 65 4 79 0.81 Ribonucleotide reductase, barrel domain Ribonuc_red_lgC PF02867.15 524 CP020479_00093 - 173 0.057 11.9 0.5 2 2 0.00024 1.4 7.4 0.0 275 304 137 166 113 171 0.80 Ribonucleotide reductase, barrel domain eIF-5_eIF-2B PF01873.17 117 CP020479_00093 - 173 0.17 11.7 2.0 1 2 2.4e-05 0.15 12.0 0.5 43 85 17 60 10 65 0.89 Domain found in IF2B/IF5 eIF-5_eIF-2B PF01873.17 117 CP020479_00093 - 173 0.17 11.7 2.0 2 2 0.95 5.7e+03 -2.8 0.0 68 81 120 133 113 152 0.65 Domain found in IF2B/IF5 RHH_7 PF16777.5 74 CP020480_00001 - 185 0.11 12.9 6.6 1 2 0.021 1.2e+02 3.1 0.1 36 59 5 28 2 39 0.86 Transcriptional regulator, RHH-like, CopG RHH_7 PF16777.5 74 CP020480_00001 - 185 0.11 12.9 6.6 2 2 5.3e-05 0.32 11.4 2.2 24 65 58 100 52 107 0.85 Transcriptional regulator, RHH-like, CopG TMEM95 PF15203.6 151 CP020480_00001 - 185 0.12 12.0 2.6 1 2 1.7e-05 0.099 12.3 0.5 26 81 44 105 18 112 0.71 TMEM95 family TMEM95 PF15203.6 151 CP020480_00001 - 185 0.12 12.0 2.6 2 2 0.21 1.2e+03 -1.0 0.1 9 42 130 163 125 174 0.71 TMEM95 family pRN1_helical PF13010.6 136 CP020480_00001 - 185 3.7 7.5 9.1 1 2 0.0004 2.4 8.1 6.5 4 62 8 73 5 84 0.80 Primase helical domain pRN1_helical PF13010.6 136 CP020480_00001 - 185 3.7 7.5 9.1 2 2 0.21 1.2e+03 -0.7 0.1 38 63 115 140 73 157 0.57 Primase helical domain Relaxase PF03432.14 242 CP020480_00002 - 554 4.2e-07 29.8 1.0 1 3 0.07 1.3e+03 -1.2 0.8 125 176 57 91 37 129 0.48 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP020480_00002 - 554 4.2e-07 29.8 1.0 2 3 2.4e-11 4.2e-07 29.8 1.0 32 170 141 269 108 286 0.79 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP020480_00002 - 554 4.2e-07 29.8 1.0 3 3 0.03 5.4e+02 0.0 0.9 131 164 415 452 360 487 0.73 Relaxase/Mobilisation nuclease domain DUF1673 PF07895.11 230 CP020480_00003 - 151 0.0051 16.5 3.4 1 2 3.1e-06 0.0051 16.5 3.4 152 227 18 93 1 94 0.74 Protein of unknown function (DUF1673) DUF1673 PF07895.11 230 CP020480_00003 - 151 0.0051 16.5 3.4 2 2 0.03 49 3.5 2.4 156 212 92 147 88 149 0.58 Protein of unknown function (DUF1673) DUF782 PF05614.11 104 CP020480_00003 - 151 0.0068 16.8 0.1 1 1 6.7e-06 0.011 16.1 0.1 8 38 16 46 13 83 0.77 Circovirus protein of unknown function (DUF782) MCU PF04678.13 176 CP020480_00003 - 151 0.047 13.8 0.3 1 1 4.3e-05 0.07 13.2 0.3 86 145 47 107 37 124 0.83 Mitochondrial calcium uniporter Acyl_transf_3 PF01757.22 340 CP020480_00003 - 151 0.074 12.1 5.8 1 1 0.0001 0.16 11.0 6.0 209 329 6 133 4 142 0.70 Acyltransferase family Adeno_terminal PF02459.15 557 CP020480_00003 - 151 0.097 11.0 0.5 1 1 6.7e-05 0.11 10.9 0.5 164 229 68 134 44 148 0.84 Adenoviral DNA terminal protein DUF2663 PF10864.8 127 CP020480_00003 - 151 0.14 12.6 12.1 1 2 0.0028 4.6 7.7 2.5 9 80 6 78 1 85 0.55 Protein of unknown function (DUF2663) DUF2663 PF10864.8 127 CP020480_00003 - 151 0.14 12.6 12.1 2 2 0.00033 0.54 10.7 2.7 25 79 88 147 74 150 0.67 Protein of unknown function (DUF2663) Sugarporin_N PF11471.8 55 CP020480_00003 - 151 0.15 12.0 0.2 1 2 0.00044 0.72 9.9 0.1 6 30 23 48 21 48 0.94 Maltoporin periplasmic N-terminal extension Sugarporin_N PF11471.8 55 CP020480_00003 - 151 0.15 12.0 0.2 2 2 0.99 1.6e+03 -0.9 0.0 6 24 58 76 52 81 0.73 Maltoporin periplasmic N-terminal extension DUF3611 PF12263.8 177 CP020480_00003 - 151 0.46 10.4 6.6 1 2 0.00017 0.28 11.1 2.5 12 80 11 78 3 89 0.81 Protein of unknown function (DUF3611) DUF3611 PF12263.8 177 CP020480_00003 - 151 0.46 10.4 6.6 2 2 0.14 2.3e+02 1.6 0.1 27 74 89 136 82 145 0.55 Protein of unknown function (DUF3611) ECF_trnsprt PF12822.7 172 CP020480_00003 - 151 2 8.5 8.7 1 2 0.0077 13 5.9 2.0 94 159 6 67 3 72 0.74 ECF transporter, substrate-specific component ECF_trnsprt PF12822.7 172 CP020480_00003 - 151 2 8.5 8.7 2 2 0.011 19 5.3 0.9 82 130 92 140 81 150 0.66 ECF transporter, substrate-specific component E1-E2_ATPase PF00122.20 181 CP020480_00003 - 151 3.6 7.1 4.3 1 3 0.34 5.5e+02 -0.0 0.1 113 136 11 34 3 41 0.75 E1-E2 ATPase E1-E2_ATPase PF00122.20 181 CP020480_00003 - 151 3.6 7.1 4.3 2 3 0.0045 7.4 6.1 0.5 114 155 45 86 28 99 0.77 E1-E2 ATPase E1-E2_ATPase PF00122.20 181 CP020480_00003 - 151 3.6 7.1 4.3 3 3 0.16 2.6e+02 1.0 0.1 103 143 106 146 95 150 0.78 E1-E2 ATPase Bac_export_2 PF01312.19 330 CP020480_00003 - 151 3.9 6.6 6.8 1 2 0.18 2.9e+02 0.5 0.5 29 59 18 49 11 73 0.36 FlhB HrpN YscU SpaS Family Bac_export_2 PF01312.19 330 CP020480_00003 - 151 3.9 6.6 6.8 2 2 0.00042 0.69 9.1 1.0 124 190 77 142 74 144 0.87 FlhB HrpN YscU SpaS Family DHHC PF01529.20 134 CP020480_00004 - 98 3.4 7.8 8.5 1 2 9.9e-05 1.8 8.7 2.9 79 122 6 49 1 58 0.79 DHHC palmitoyltransferase DHHC PF01529.20 134 CP020480_00004 - 98 3.4 7.8 8.5 2 2 0.004 71 3.5 7.8 55 119 26 87 23 97 0.49 DHHC palmitoyltransferase AAA_31 PF13614.6 177 CP020480_00008 - 219 1.9e-11 44.2 4.9 1 2 4.5e-14 6.7e-11 42.4 2.8 2 74 2 85 1 158 0.71 AAA domain AAA_31 PF13614.6 177 CP020480_00008 - 219 1.9e-11 44.2 4.9 2 2 0.37 5.5e+02 0.3 0.6 107 121 143 157 114 217 0.60 AAA domain MipZ PF09140.11 262 CP020480_00008 - 219 2.6e-11 43.3 1.7 1 2 2.2e-09 3.3e-06 26.6 1.0 2 145 3 133 2 164 0.72 ATPase MipZ MipZ PF09140.11 262 CP020480_00008 - 219 2.6e-11 43.3 1.7 2 2 0.0039 5.8 6.1 0.0 213 258 174 214 132 217 0.88 ATPase MipZ CbiA PF01656.23 128 CP020480_00008 - 219 4.3e-09 36.5 0.1 1 1 4.3e-12 6.4e-09 35.9 0.1 5 110 8 171 4 190 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 305 CP020480_00008 - 219 0.00014 21.2 0.4 1 2 5.4e-07 0.00081 18.7 0.0 8 46 9 47 1 75 0.87 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 CP020480_00008 - 219 0.00014 21.2 0.4 2 2 0.26 3.8e+02 0.0 0.5 139 180 117 158 110 214 0.61 Anion-transporting ATPase VirC1 PF07015.11 231 CP020480_00008 - 219 0.0011 18.3 0.1 1 2 0.0012 1.7 7.9 0.0 1 40 1 40 1 58 0.86 VirC1 protein VirC1 PF07015.11 231 CP020480_00008 - 219 0.0011 18.3 0.1 2 2 0.00057 0.85 8.9 0.0 87 152 83 149 67 214 0.75 VirC1 protein ABC2_membrane_3 PF12698.7 345 CP020480_00008 - 219 0.0019 17.4 0.9 1 1 1.4e-06 0.0021 17.2 0.9 21 128 19 138 13 213 0.62 ABC-2 family transporter protein AAA_24 PF13479.6 197 CP020480_00008 - 219 0.0035 17.1 1.2 1 2 4.1e-06 0.0061 16.3 0.1 11 73 11 87 9 91 0.75 AAA domain AAA_24 PF13479.6 197 CP020480_00008 - 219 0.0035 17.1 1.2 2 2 1.5 2.2e+03 -1.9 0.1 31 58 185 213 158 217 0.62 AAA domain ParA PF10609.9 246 CP020480_00008 - 219 0.004 16.7 0.0 1 1 4.8e-06 0.0072 15.8 0.0 6 41 4 39 1 58 0.85 NUBPL iron-transfer P-loop NTPase ATP_bind_1 PF03029.17 241 CP020480_00008 - 219 0.019 14.8 0.1 1 2 4.5e-05 0.068 13.0 0.0 6 34 12 40 10 49 0.91 Conserved hypothetical ATP binding protein ATP_bind_1 PF03029.17 241 CP020480_00008 - 219 0.019 14.8 0.1 2 2 0.91 1.4e+03 -1.1 0.0 197 197 90 90 41 153 0.53 Conserved hypothetical ATP binding protein CBP_BcsQ PF06564.12 234 CP020480_00008 - 219 0.14 11.6 0.0 1 2 0.00038 0.57 9.6 0.0 1 39 1 39 1 56 0.88 Cellulose biosynthesis protein BcsQ CBP_BcsQ PF06564.12 234 CP020480_00008 - 219 0.14 11.6 0.0 2 2 0.5 7.5e+02 -0.6 0.0 154 176 129 152 98 181 0.69 Cellulose biosynthesis protein BcsQ DUF2139 PF09910.9 340 CP020480_00008 - 219 0.14 11.3 0.0 1 1 0.0003 0.45 9.6 0.0 170 251 51 128 2 138 0.82 Uncharacterized protein conserved in archaea (DUF2139) AAA_14 PF13173.6 131 CP020480_00008 - 219 0.19 11.7 7.5 1 3 3.4e-05 0.051 13.6 1.4 13 71 13 86 11 103 0.67 AAA domain AAA_14 PF13173.6 131 CP020480_00008 - 219 0.19 11.7 7.5 2 3 0.92 1.4e+03 -0.7 0.1 66 70 140 144 93 183 0.57 AAA domain AAA_14 PF13173.6 131 CP020480_00008 - 219 0.19 11.7 7.5 3 3 0.33 5e+02 0.7 0.1 20 58 171 213 167 218 0.65 AAA domain Fic PF02661.18 97 CP020480_00009 - 234 3.2e-15 56.8 0.1 1 1 1.2e-18 7.3e-15 55.6 0.1 2 96 53 157 52 158 0.78 Fic/DOC family IL22 PF14565.6 139 CP020480_00009 - 234 0.018 15.3 0.9 1 3 0.011 66 3.8 0.0 9 72 5 77 2 93 0.70 Interleukin 22 IL-10-related T-cell-derived-inducible factor IL22 PF14565.6 139 CP020480_00009 - 234 0.018 15.3 0.9 2 3 0.00025 1.5 9.1 0.0 54 103 104 153 100 174 0.90 Interleukin 22 IL-10-related T-cell-derived-inducible factor IL22 PF14565.6 139 CP020480_00009 - 234 0.018 15.3 0.9 3 3 0.2 1.2e+03 -0.3 0.1 100 115 203 218 150 232 0.59 Interleukin 22 IL-10-related T-cell-derived-inducible factor IZUMO PF15005.6 143 CP020480_00009 - 234 1.1 9.8 7.3 1 3 0.00028 1.7 9.2 0.1 30 90 27 87 8 92 0.89 Izumo sperm-egg fusion, Ig domain-associated IZUMO PF15005.6 143 CP020480_00009 - 234 1.1 9.8 7.3 2 3 0.13 8e+02 0.5 0.1 88 105 114 131 101 145 0.54 Izumo sperm-egg fusion, Ig domain-associated IZUMO PF15005.6 143 CP020480_00009 - 234 1.1 9.8 7.3 3 3 0.032 1.9e+02 2.5 0.6 44 80 181 217 163 227 0.67 Izumo sperm-egg fusion, Ig domain-associated CRISPR_Cas2 PF09827.9 76 CP020480_00011 - 140 0.00069 19.8 1.5 1 2 3.7e-07 0.0022 18.1 0.0 5 54 7 67 3 83 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP020480_00011 - 140 0.00069 19.8 1.5 2 2 0.15 8.8e+02 0.2 0.3 41 54 111 124 79 136 0.66 CRISPR associated protein Cas2 RRM_1 PF00076.22 70 CP020480_00011 - 140 0.0021 17.8 0.5 1 2 1.4e-06 0.0083 15.9 0.1 6 62 7 68 5 70 0.89 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_1 PF00076.22 70 CP020480_00011 - 140 0.0021 17.8 0.5 2 2 0.22 1.3e+03 -0.7 0.0 4 18 104 118 104 132 0.80 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LPD11 PF18824.1 69 CP020480_00011 - 140 0.085 12.9 1.8 1 3 0.34 2e+03 -1.1 0.0 28 50 10 32 2 33 0.77 Large polyvalent protein-associated domain 11 LPD11 PF18824.1 69 CP020480_00011 - 140 0.085 12.9 1.8 2 3 0.84 5e+03 -2.3 0.0 61 67 57 63 48 74 0.54 Large polyvalent protein-associated domain 11 LPD11 PF18824.1 69 CP020480_00011 - 140 0.085 12.9 1.8 3 3 2.9e-05 0.17 12.0 0.4 25 55 102 132 86 137 0.88 Large polyvalent protein-associated domain 11 YopX PF09643.10 131 CP020480_00013 - 281 1.4e-08 34.8 0.5 1 2 0.056 1e+03 -0.3 0.2 20 77 57 120 39 142 0.58 YopX protein YopX PF09643.10 131 CP020480_00013 - 281 1.4e-08 34.8 0.5 2 2 8e-13 1.4e-08 34.8 0.5 47 130 159 235 116 236 0.79 YopX protein Topoisom_bac PF01131.20 413 CP020480_00014 - 723 3.8e-97 325.9 2.9 1 1 4.8e-100 4.8e-97 325.6 2.9 3 413 154 591 152 591 0.93 DNA topoisomerase Toprim PF01751.22 103 CP020480_00014 - 723 6.8e-12 45.5 0.3 1 2 3.4e-14 3.4e-11 43.3 0.1 1 101 2 134 2 136 0.86 Toprim domain Toprim PF01751.22 103 CP020480_00014 - 723 6.8e-12 45.5 0.3 2 2 5.4 5.4e+03 -2.3 0.0 61 77 497 513 457 516 0.65 Toprim domain zf-C4_Topoisom PF01396.19 39 CP020480_00014 - 723 2.3e-07 30.5 20.4 1 2 1e-06 0.001 18.8 4.6 2 32 619 651 618 657 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP020480_00014 - 723 2.3e-07 30.5 20.4 2 2 3.4e-06 0.0034 17.1 7.9 3 37 674 713 672 715 0.85 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP020480_00014 - 723 0.00043 20.5 0.2 1 2 0.0039 3.9 7.8 0.0 18 34 615 631 610 632 0.78 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP020480_00014 - 723 0.00043 20.5 0.2 2 2 0.00069 0.69 10.2 0.0 20 32 671 683 661 685 0.78 zinc-ribbon Zn_ribbon_SprT PF17283.2 38 CP020480_00014 - 723 0.014 15.2 1.1 1 2 0.46 4.6e+02 0.8 0.1 7 13 621 627 614 632 0.64 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 CP020480_00014 - 723 0.014 15.2 1.1 2 2 0.00011 0.11 12.4 0.2 4 27 672 699 669 704 0.93 SprT-like zinc ribbon domain Toprim_2 PF13155.6 90 CP020480_00014 - 723 0.034 14.6 0.2 1 2 0.00069 0.68 10.4 0.1 37 75 91 131 83 154 0.80 Toprim-like Toprim_2 PF13155.6 90 CP020480_00014 - 723 0.034 14.6 0.2 2 2 0.51 5.1e+02 1.2 0.0 33 58 488 513 465 516 0.78 Toprim-like Zn-ribbon_8 PF09723.10 40 CP020480_00014 - 723 0.082 13.0 0.7 1 2 0.035 35 4.6 0.0 18 34 609 626 603 632 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP020480_00014 - 723 0.082 13.0 0.7 2 2 0.012 11 6.2 0.1 5 21 672 688 665 693 0.77 Zinc ribbon domain zinc_ribbon_4 PF13717.6 36 CP020480_00014 - 723 0.1 12.5 2.3 1 2 0.018 18 5.3 0.2 2 12 618 628 618 629 0.85 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP020480_00014 - 723 0.1 12.5 2.3 2 2 0.011 11 6.1 0.1 4 17 674 687 672 694 0.84 zinc-ribbon domain Toprim_4 PF13662.6 89 CP020480_00014 - 723 0.12 12.8 0.1 1 2 0.00079 0.79 10.2 0.0 49 76 89 120 69 132 0.71 Toprim domain Toprim_4 PF13662.6 89 CP020480_00014 - 723 0.12 12.8 0.1 2 2 4.2 4.2e+03 -1.7 0.0 28 68 481 513 470 515 0.70 Toprim domain zf-ribbon_3 PF13248.6 26 CP020480_00014 - 723 0.18 11.3 1.0 1 2 0.013 12 5.4 0.1 2 11 618 628 617 633 0.74 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP020480_00014 - 723 0.18 11.3 1.0 2 2 0.04 40 3.8 0.1 1 8 671 678 671 687 0.83 zinc-ribbon domain HTH_34 PF13601.6 80 CP020480_00014 - 723 0.25 11.6 1.1 1 2 3.4 3.4e+03 -1.7 0.1 46 63 465 482 463 495 0.75 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP020480_00014 - 723 0.25 11.6 1.1 2 2 0.00077 0.77 10.0 0.1 32 57 524 549 519 558 0.84 Winged helix DNA-binding domain TRAF6_Z2 PF18048.1 27 CP020480_00014 - 723 0.45 10.6 3.7 1 3 1.7 1.7e+03 -0.8 0.0 18 25 264 271 262 272 0.85 TNF receptor-associated factor 6 zinc finger 2 TRAF6_Z2 PF18048.1 27 CP020480_00014 - 723 0.45 10.6 3.7 2 3 2 2e+03 -1.0 0.0 5 10 620 625 618 628 0.81 TNF receptor-associated factor 6 zinc finger 2 TRAF6_Z2 PF18048.1 27 CP020480_00014 - 723 0.45 10.6 3.7 3 3 0.0012 1.1 9.4 0.4 5 13 674 682 671 684 0.89 TNF receptor-associated factor 6 zinc finger 2 Zn_Tnp_IS1 PF03811.13 35 CP020480_00014 - 723 0.48 10.2 3.3 1 2 0.073 73 3.2 0.2 6 12 619 625 617 627 0.88 InsA N-terminal domain Zn_Tnp_IS1 PF03811.13 35 CP020480_00014 - 723 0.48 10.2 3.3 2 2 0.0051 5.1 6.9 0.4 7 33 674 701 672 703 0.89 InsA N-terminal domain zf-HIT PF04438.16 30 CP020480_00014 - 723 0.61 10.0 4.2 1 2 0.048 47 4.0 0.3 11 23 616 628 614 643 0.83 HIT zinc finger zf-HIT PF04438.16 30 CP020480_00014 - 723 0.61 10.0 4.2 2 2 0.006 5.9 6.8 0.4 11 20 670 679 667 682 0.86 HIT zinc finger zf_C2H2_10 PF18414.1 26 CP020480_00014 - 723 2.6 7.7 7.4 1 2 0.011 11 5.7 1.3 4 10 620 626 618 628 0.85 C2H2 type zinc-finger zf_C2H2_10 PF18414.1 26 CP020480_00014 - 723 2.6 7.7 7.4 2 2 0.025 25 4.5 0.5 2 9 672 679 671 681 0.88 C2H2 type zinc-finger PIN_4 PF13638.6 131 CP020480_00014 - 723 4.1 7.7 5.5 1 3 3.4 3.4e+03 -1.7 0.0 28 64 204 241 200 277 0.52 PIN domain PIN_4 PF13638.6 131 CP020480_00014 - 723 4.1 7.7 5.5 2 3 0.00089 0.89 9.8 0.5 60 126 470 554 442 558 0.79 PIN domain PIN_4 PF13638.6 131 CP020480_00014 - 723 4.1 7.7 5.5 3 3 9 8.9e+03 -3.1 0.1 79 91 607 619 574 620 0.47 PIN domain PADR1 PF08063.12 53 CP020480_00014 - 723 7.6 6.4 8.1 1 2 0.0096 9.6 6.1 1.7 15 50 620 656 619 658 0.80 PADR1 (NUC008) domain PADR1 PF08063.12 53 CP020480_00014 - 723 7.6 6.4 8.1 2 2 0.069 69 3.3 0.6 15 28 674 687 673 702 0.82 PADR1 (NUC008) domain zf-H2C2_2 PF13465.6 26 CP020480_00014 - 723 7.9 7.1 8.1 1 2 0.068 67 4.2 0.1 9 24 613 628 609 630 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP020480_00014 - 723 7.9 7.1 8.1 2 2 0.012 12 6.5 0.7 11 24 669 682 665 683 0.82 Zinc-finger double domain Latarcin PF10279.9 81 CP020480_00016 - 296 0.016 15.6 1.6 1 1 0.00029 0.66 10.4 1.6 22 76 56 184 14 189 0.78 Latarcin precursor Lipase_GDSL PF00657.22 200 CP020480_00016 - 296 0.033 14.2 1.1 1 1 3e-05 0.067 13.2 0.9 48 131 27 170 15 219 0.75 GDSL-like Lipase/Acylhydrolase T3SS_basalb_I PF17001.5 96 CP020480_00016 - 296 0.078 13.6 4.2 1 2 0.00077 1.7 9.3 0.5 3 62 20 91 18 107 0.70 Type III secretion basal body protein I, YscI, HrpB, PscI T3SS_basalb_I PF17001.5 96 CP020480_00016 - 296 0.078 13.6 4.2 2 2 0.019 44 4.8 0.1 2 43 158 208 157 219 0.55 Type III secretion basal body protein I, YscI, HrpB, PscI Cor1 PF04803.12 132 CP020480_00016 - 296 0.15 12.3 22.3 1 3 0.0051 11 6.2 4.9 5 53 3 51 1 86 0.76 Cor1/Xlr/Xmr conserved region Cor1 PF04803.12 132 CP020480_00016 - 296 0.15 12.3 22.3 2 3 6.9e-05 0.15 12.2 6.2 45 124 97 179 82 182 0.83 Cor1/Xlr/Xmr conserved region Cor1 PF04803.12 132 CP020480_00016 - 296 0.15 12.3 22.3 3 3 0.095 2.1e+02 2.1 0.5 7 40 178 211 172 218 0.61 Cor1/Xlr/Xmr conserved region DUF1451 PF07295.11 147 CP020480_00016 - 296 0.25 11.3 8.8 1 3 0.05 1.1e+02 2.8 0.4 35 89 22 76 2 88 0.75 Zinc-ribbon containing domain DUF1451 PF07295.11 147 CP020480_00016 - 296 0.25 11.3 8.8 2 3 0.29 6.4e+02 0.3 0.1 9 45 62 96 56 121 0.67 Zinc-ribbon containing domain DUF1451 PF07295.11 147 CP020480_00016 - 296 0.25 11.3 8.8 3 3 8.8e-05 0.2 11.7 2.5 6 100 118 205 111 215 0.87 Zinc-ribbon containing domain TipAS PF07739.13 117 CP020480_00016 - 296 0.36 11.4 6.4 1 3 0.24 5.3e+02 1.2 0.7 15 44 27 56 13 88 0.57 TipAS antibiotic-recognition domain TipAS PF07739.13 117 CP020480_00016 - 296 0.36 11.4 6.4 2 3 0.012 27 5.4 0.1 26 75 89 138 56 149 0.68 TipAS antibiotic-recognition domain TipAS PF07739.13 117 CP020480_00016 - 296 0.36 11.4 6.4 3 3 0.004 9 6.9 0.2 19 71 156 208 147 224 0.85 TipAS antibiotic-recognition domain Exonuc_VII_L PF02601.15 304 CP020480_00016 - 296 0.37 10.3 10.9 1 2 0.0064 14 5.1 3.2 159 242 15 77 1 119 0.29 Exonuclease VII, large subunit Exonuc_VII_L PF02601.15 304 CP020480_00016 - 296 0.37 10.3 10.9 2 2 0.00029 0.65 9.5 2.7 144 240 105 204 96 279 0.65 Exonuclease VII, large subunit OmpH PF03938.14 138 CP020480_00016 - 296 2.8 8.3 16.8 1 3 0.0016 3.5 8.0 3.1 23 103 15 108 3 115 0.72 Outer membrane protein (OmpH-like) OmpH PF03938.14 138 CP020480_00016 - 296 2.8 8.3 16.8 2 3 0.0017 3.8 7.9 2.6 35 117 137 222 111 233 0.62 Outer membrane protein (OmpH-like) OmpH PF03938.14 138 CP020480_00016 - 296 2.8 8.3 16.8 3 3 0.84 1.9e+03 -0.9 0.1 16 32 244 260 232 288 0.54 Outer membrane protein (OmpH-like) TrbM PF07424.11 156 CP020480_00017 - 197 3.4e-39 134.3 1.4 1 1 2.4e-43 4.3e-39 133.9 1.4 2 148 23 181 22 190 0.87 TrbM Cag12 PF13117.6 97 CP020480_00018 - 136 1.1e-16 61.2 0.1 1 1 2.4e-20 1.4e-16 60.7 0.1 6 94 29 115 25 118 0.92 Cag pathogenicity island protein Cag12 LPAM_2 PF13627.6 23 CP020480_00018 - 136 0.027 14.3 3.2 1 1 7.4e-06 0.044 13.6 3.2 2 19 7 24 6 24 0.90 Prokaryotic lipoprotein-attachment site DUF5061 PF16587.5 103 CP020480_00018 - 136 0.15 12.2 0.1 1 1 3.1e-05 0.19 11.8 0.1 2 34 8 40 7 91 0.82 17 kDa common-antigen outer membrane protein T4SS-DNA_transf PF02534.14 469 CP020480_00019 - 606 1.1e-109 367.3 0.1 1 1 3.4e-113 1.5e-109 366.9 0.1 2 461 93 572 82 578 0.86 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP020480_00019 - 606 6.2e-27 94.1 0.0 1 1 2.4e-30 1.1e-26 93.3 0.0 2 125 414 535 413 536 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP020480_00019 - 606 1.4e-18 67.0 0.0 1 2 1.4e-06 0.0061 15.5 0.0 44 127 158 253 136 272 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP020480_00019 - 606 1.4e-18 67.0 0.0 2 2 7.3e-17 3.3e-13 49.3 0.0 158 369 322 538 301 550 0.78 Type IV secretion-system coupling protein DNA-binding domain BRI3BP PF14965.6 180 CP020480_00019 - 606 0.1 12.1 2.6 1 2 2.4e-05 0.11 12.0 1.5 70 144 4 77 1 100 0.82 Negative regulator of p53/TP53 BRI3BP PF14965.6 180 CP020480_00019 - 606 0.1 12.1 2.6 2 2 1.3 6e+03 -3.4 0.0 8 27 490 509 488 520 0.81 Negative regulator of p53/TP53 Njmu-R1 PF15053.6 353 CP020480_00021 - 234 0.0055 15.9 1.7 1 1 2.7e-06 0.0081 15.3 1.7 121 227 3 109 1 140 0.77 Mjmu-R1-like protein family SlyX PF04102.12 67 CP020480_00021 - 234 0.5 11.0 6.8 1 2 0.00058 1.7 9.3 0.9 7 55 5 53 4 64 0.83 SlyX SlyX PF04102.12 67 CP020480_00021 - 234 0.5 11.0 6.8 2 2 0.019 56 4.5 0.6 30 52 206 228 198 233 0.68 SlyX PEP-utilisers_N PF05524.13 116 CP020480_00021 - 234 0.54 10.5 3.9 1 2 0.012 37 4.5 0.3 27 63 18 55 5 79 0.70 PEP-utilising enzyme, N-terminal PEP-utilisers_N PF05524.13 116 CP020480_00021 - 234 0.54 10.5 3.9 2 2 0.0026 7.8 6.7 0.3 19 51 195 227 176 233 0.80 PEP-utilising enzyme, N-terminal Halogen_Hydrol PF10112.9 191 CP020480_00021 - 234 1.6 8.8 7.3 1 2 0.003 9.1 6.3 0.9 66 95 20 49 3 71 0.80 5-bromo-4-chloroindolyl phosphate hydrolysis protein Halogen_Hydrol PF10112.9 191 CP020480_00021 - 234 1.6 8.8 7.3 2 2 0.0039 12 5.9 0.8 49 82 195 228 176 231 0.83 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF16 PF01519.16 104 CP020480_00021 - 234 4.3 7.9 11.6 1 3 0.0011 3.2 8.3 2.4 24 56 12 44 3 77 0.74 Protein of unknown function DUF16 DUF16 PF01519.16 104 CP020480_00021 - 234 4.3 7.9 11.6 2 3 1.2 3.6e+03 -1.5 0.0 14 25 95 106 58 132 0.66 Protein of unknown function DUF16 DUF16 PF01519.16 104 CP020480_00021 - 234 4.3 7.9 11.6 3 3 0.014 42 4.7 1.0 42 68 201 227 177 233 0.58 Protein of unknown function DUF16 PCRF PF03462.18 193 CP020480_00021 - 234 4.3 7.1 17.6 1 2 0.00018 0.53 10.1 5.0 15 91 15 93 3 99 0.86 PCRF domain PCRF PF03462.18 193 CP020480_00021 - 234 4.3 7.1 17.6 2 2 0.13 3.9e+02 0.8 4.4 2 53 117 168 116 229 0.48 PCRF domain T2SSE PF00437.20 273 CP020480_00022 - 329 5.1e-54 183.2 0.0 1 1 1.2e-56 6.4e-54 182.8 0.0 6 269 14 311 9 314 0.94 Type II/IV secretion system protein AAA_22 PF13401.6 137 CP020480_00022 - 329 4.9e-05 23.6 0.0 1 1 1.8e-07 9.4e-05 22.7 0.0 7 57 162 222 159 251 0.82 AAA domain ABC_tran PF00005.27 137 CP020480_00022 - 329 0.00012 22.6 0.0 1 1 5.5e-07 0.00029 21.4 0.0 8 51 157 201 150 229 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP020480_00022 - 329 0.00021 20.7 0.0 1 1 6.5e-07 0.00034 20.0 0.0 28 60 146 181 125 183 0.79 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP020480_00022 - 329 0.00062 19.3 0.0 1 1 2e-06 0.0011 18.6 0.0 19 58 146 185 130 196 0.85 P-loop containing dynein motor region AAA_23 PF13476.6 200 CP020480_00022 - 329 0.0028 18.2 1.3 1 2 4.3 2.3e+03 -1.1 0.2 154 156 124 126 42 151 0.51 AAA domain AAA_23 PF13476.6 200 CP020480_00022 - 329 0.0028 18.2 1.3 2 2 5.3e-06 0.0028 18.2 1.3 5 38 147 179 145 182 0.84 AAA domain TsaE PF02367.17 125 CP020480_00022 - 329 0.003 17.5 0.0 1 1 1.2e-05 0.0064 16.5 0.0 11 45 150 186 142 194 0.77 Threonylcarbamoyl adenosine biosynthesis protein TsaE Pox_A32 PF04665.12 242 CP020480_00022 - 329 0.003 17.0 0.0 1 1 9.2e-06 0.0048 16.4 0.0 15 36 162 183 145 209 0.85 Poxvirus A32 protein AAA_15 PF13175.6 369 CP020480_00022 - 329 0.0035 17.1 2.5 1 2 0.21 1.1e+02 2.3 1.2 184 217 74 139 2 147 0.50 AAA ATPase domain AAA_15 PF13175.6 369 CP020480_00022 - 329 0.0035 17.1 2.5 2 2 6.7e-06 0.0035 17.1 2.5 9 54 147 191 145 224 0.78 AAA ATPase domain AAA_24 PF13479.6 197 CP020480_00022 - 329 0.0041 16.9 0.0 1 1 1.3e-05 0.0069 16.1 0.0 3 32 161 187 160 229 0.74 AAA domain Septin PF00735.18 281 CP020480_00022 - 329 0.0043 16.4 0.0 1 1 1.4e-05 0.0072 15.6 0.0 5 33 161 189 157 209 0.78 Septin RNA_helicase PF00910.22 107 CP020480_00022 - 329 0.012 16.0 0.0 1 1 8.1e-05 0.043 14.2 0.0 1 21 163 183 163 223 0.85 RNA helicase ATPase_2 PF01637.18 233 CP020480_00022 - 329 0.013 15.4 0.0 1 1 3.9e-05 0.021 14.8 0.0 23 82 163 226 150 281 0.86 ATPase domain predominantly from Archaea NACHT PF05729.12 166 CP020480_00022 - 329 0.015 15.2 0.0 1 1 4.8e-05 0.025 14.5 0.0 3 22 163 182 161 185 0.91 NACHT domain AAA_29 PF13555.6 61 CP020480_00022 - 329 0.015 15.0 0.0 1 1 6.6e-05 0.035 13.9 0.0 8 39 148 177 139 183 0.74 P-loop containing region of AAA domain DUF87 PF01935.17 227 CP020480_00022 - 329 0.015 15.4 1.0 1 2 2.6 1.4e+03 -0.8 0.1 152 187 105 138 37 158 0.65 Helicase HerA, central domain DUF87 PF01935.17 227 CP020480_00022 - 329 0.015 15.4 1.0 2 2 5.6e-05 0.03 14.4 0.2 24 45 161 182 138 193 0.82 Helicase HerA, central domain DUF815 PF05673.13 250 CP020480_00022 - 329 0.021 14.0 0.0 1 1 5.9e-05 0.031 13.4 0.0 11 76 117 183 107 209 0.79 Protein of unknown function (DUF815) DEAD PF00270.29 176 CP020480_00022 - 329 0.021 14.6 0.0 1 1 5.7e-05 0.03 14.1 0.0 11 32 157 177 144 283 0.83 DEAD/DEAH box helicase Mg_chelatase PF01078.21 207 CP020480_00022 - 329 0.023 14.1 0.0 1 2 2 1.1e+03 -1.2 0.0 40 59 84 103 81 125 0.82 Magnesium chelatase, subunit ChlI Mg_chelatase PF01078.21 207 CP020480_00022 - 329 0.023 14.1 0.0 2 2 0.0002 0.1 11.9 0.0 7 49 145 187 139 227 0.82 Magnesium chelatase, subunit ChlI ATP_bind_1 PF03029.17 241 CP020480_00022 - 329 0.027 14.3 0.0 1 1 9.4e-05 0.049 13.4 0.0 1 23 165 187 165 193 0.86 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 167 CP020480_00022 - 329 0.045 13.7 0.0 1 1 0.00014 0.072 13.0 0.0 64 121 127 182 110 199 0.67 RsgA GTPase TrwB_AAD_bind PF10412.9 386 CP020480_00022 - 329 0.046 12.6 0.0 1 1 0.00015 0.079 11.8 0.0 17 45 162 190 156 221 0.78 Type IV secretion-system coupling protein DNA-binding domain Dynamin_N PF00350.23 168 CP020480_00022 - 329 0.051 13.6 0.0 1 2 1.2 6.2e+02 0.3 0.0 21 53 84 115 25 156 0.64 Dynamin family Dynamin_N PF00350.23 168 CP020480_00022 - 329 0.051 13.6 0.0 2 2 0.00075 0.4 10.7 0.0 1 32 163 192 163 221 0.88 Dynamin family ResIII PF04851.15 171 CP020480_00022 - 329 0.055 13.5 0.1 1 1 0.00023 0.12 12.4 0.1 5 46 142 182 137 224 0.87 Type III restriction enzyme, res subunit SMC_N PF02463.19 220 CP020480_00022 - 329 0.063 12.7 0.1 1 1 0.00022 0.12 11.8 0.1 7 44 146 180 137 206 0.76 RecF/RecN/SMC N terminal domain PduV-EutP PF10662.9 143 CP020480_00022 - 329 0.07 12.9 0.0 1 2 0.0013 0.7 9.6 0.0 2 22 161 181 160 204 0.88 Ethanolamine utilisation - propanediol utilisation PduV-EutP PF10662.9 143 CP020480_00022 - 329 0.07 12.9 0.0 2 2 0.84 4.4e+02 0.5 0.0 76 109 288 321 275 326 0.80 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 130 CP020480_00022 - 329 0.073 13.6 0.0 1 1 0.00027 0.14 12.7 0.0 1 93 163 278 163 292 0.56 AAA domain PRK PF00485.18 197 CP020480_00022 - 329 0.089 12.5 0.0 1 1 0.00031 0.16 11.7 0.0 2 37 163 197 162 224 0.68 Phosphoribulokinase / Uridine kinase family MobB PF03205.14 133 CP020480_00022 - 329 0.09 12.7 0.0 1 1 0.00036 0.19 11.6 0.0 2 22 163 183 162 199 0.88 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.6 131 CP020480_00022 - 329 0.091 12.8 0.3 1 1 0.0004 0.21 11.6 0.0 3 50 161 208 160 241 0.76 AAA domain GvpD PF07088.11 484 CP020480_00022 - 329 0.093 11.3 0.0 1 1 0.00022 0.12 11.0 0.0 8 43 158 193 150 260 0.74 GvpD gas vesicle protein Sigma54_activat PF00158.26 168 CP020480_00022 - 329 0.1 12.3 0.0 1 1 0.00045 0.24 11.1 0.0 13 43 151 181 142 200 0.81 Sigma-54 interaction domain Roc PF08477.13 120 CP020480_00022 - 329 0.12 12.6 0.1 1 1 0.00066 0.35 11.1 0.0 2 21 163 182 162 210 0.81 Ras of Complex, Roc, domain of DAPkinase AAA_33 PF13671.6 143 CP020480_00022 - 329 0.13 12.5 0.0 1 1 0.00039 0.21 11.8 0.0 2 20 163 181 163 240 0.90 AAA domain MORN_2 PF07661.13 22 CP020480_00023 - 194 0.39 11.1 2.9 1 2 0.051 4.5e+02 1.7 0.1 8 22 138 152 134 152 0.81 MORN repeat variant MORN_2 PF07661.13 22 CP020480_00023 - 194 0.39 11.1 2.9 2 2 0.00031 2.8 8.4 0.6 5 17 155 167 154 169 0.89 MORN repeat variant Ribosomal_S13 PF00416.22 128 CP020480_00023 - 194 0.83 10.1 4.2 1 2 0.002 17 5.8 0.1 47 91 22 66 8 83 0.78 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 CP020480_00023 - 194 0.83 10.1 4.2 2 2 0.0036 32 4.9 1.4 37 72 155 190 146 194 0.80 Ribosomal protein S13/S18 TrbI PF03743.14 187 CP020480_00024 - 216 2.2e-47 161.4 0.1 1 1 1.4e-51 2.5e-47 161.2 0.1 1 187 25 206 25 206 0.98 Bacterial conjugation TrbI-like protein DUF5345 PF17280.2 77 CP020480_00025 - 73 0.01 15.8 0.1 1 1 6e-06 0.018 15.0 0.1 31 61 12 42 4 44 0.90 Family of unknown function (DUF5345) DUF3671 PF12420.8 115 CP020480_00025 - 73 0.029 14.4 0.2 1 1 1.2e-05 0.036 14.1 0.2 31 86 6 62 2 67 0.78 Protein of unknown function Cyt_bd_oxida_I PF01654.17 418 CP020480_00025 - 73 0.074 11.7 0.0 1 1 2.6e-05 0.079 11.6 0.0 182 208 21 51 12 62 0.76 Cytochrome bd terminal oxidase subunit I PAP_PilO PF06864.12 410 CP020480_00025 - 73 0.12 11.2 0.0 1 1 4e-05 0.12 11.2 0.0 161 203 17 58 2 72 0.68 Pilin accessory protein (PilO) AIF_C PF14721.6 131 CP020480_00025 - 73 0.19 12.1 2.0 1 2 7.8e-05 0.23 11.8 0.4 84 121 6 43 1 54 0.83 Apoptosis-inducing factor, mitochondrion-associated, C-term AIF_C PF14721.6 131 CP020480_00025 - 73 0.19 12.1 2.0 2 2 0.14 4.1e+02 1.3 0.4 81 95 50 64 40 72 0.32 Apoptosis-inducing factor, mitochondrion-associated, C-term Vpu PF00558.19 81 CP020480_00025 - 73 1.5 8.7 5.5 1 1 0.0017 5.1 6.9 5.4 4 38 19 54 16 65 0.73 Vpu protein CagX PF03524.15 211 CP020480_00026 - 316 7.1e-54 182.7 0.7 1 1 8e-58 1.4e-53 181.7 0.7 2 211 29 270 28 270 0.92 Conjugal transfer protein VirB8 PF04335.13 214 CP020480_00027 - 219 8.4e-50 169.6 0.1 1 1 1.1e-53 1e-49 169.3 0.1 5 214 10 216 7 216 0.92 VirB8 protein Wzz PF02706.15 92 CP020480_00027 - 219 2.4 8.5 6.7 1 2 0.00031 2.8 8.3 3.2 8 51 17 60 11 124 0.63 Chain length determinant protein Wzz PF02706.15 92 CP020480_00027 - 219 2.4 8.5 6.7 2 2 0.085 7.6e+02 0.5 0.1 42 64 159 186 158 203 0.62 Chain length determinant protein VASP_tetra PF08776.11 37 CP020480_00028 - 69 0.063 12.9 6.4 1 1 9.1e-06 0.16 11.5 6.4 6 35 35 63 35 65 0.92 VASP tetramerisation domain TrbL PF04610.14 215 CP020480_00030 - 331 1.2e-32 113.5 25.3 1 1 3.6e-36 1.6e-32 113.0 25.3 1 212 40 245 40 279 0.91 TrbL/VirB6 plasmid conjugal transfer protein DUF2070 PF09843.9 564 CP020480_00030 - 331 0.45 8.7 16.6 1 1 0.00015 0.69 8.1 16.6 20 125 135 248 117 263 0.78 Predicted membrane protein (DUF2070) AIM3 PF17096.5 88 CP020480_00030 - 331 5.4 8.0 7.0 1 1 0.0021 9.6 7.2 7.0 7 35 281 309 278 312 0.92 Altered inheritance of mitochondria protein 3 DUF412 PF04217.13 141 CP020480_00030 - 331 5.6 6.9 10.8 1 3 0.021 95 2.9 0.0 60 90 30 60 12 71 0.78 Protein of unknown function, DUF412 DUF412 PF04217.13 141 CP020480_00030 - 331 5.6 6.9 10.8 2 3 0.0038 17 5.3 6.6 38 101 137 197 118 205 0.78 Protein of unknown function, DUF412 DUF412 PF04217.13 141 CP020480_00030 - 331 5.6 6.9 10.8 3 3 1.2 5.5e+03 -2.8 0.0 59 79 227 251 204 252 0.61 Protein of unknown function, DUF412 T4SS PF07996.11 197 CP020480_00031 - 245 2e-23 83.9 15.9 1 1 1.1e-26 2.4e-23 83.6 15.9 1 195 21 225 21 227 0.91 Type IV secretion system proteins CHASE4 PF05228.13 137 CP020480_00031 - 245 0.051 13.8 5.7 1 3 0.01 23 5.2 0.6 4 36 36 68 35 71 0.89 CHASE4 domain CHASE4 PF05228.13 137 CP020480_00031 - 245 0.051 13.8 5.7 2 3 0.00046 1 9.6 0.2 2 58 75 138 74 175 0.79 CHASE4 domain CHASE4 PF05228.13 137 CP020480_00031 - 245 0.051 13.8 5.7 3 3 0.42 9.4e+02 -0.0 0.0 92 122 147 178 138 192 0.86 CHASE4 domain AChE_tetra PF08674.10 37 CP020480_00031 - 245 0.096 12.4 1.2 1 2 0.00022 0.5 10.1 0.1 6 29 43 66 41 72 0.92 Acetylcholinesterase tetramerisation domain AChE_tetra PF08674.10 37 CP020480_00031 - 245 0.096 12.4 1.2 2 2 0.22 4.9e+02 0.5 0.1 15 35 123 143 121 145 0.88 Acetylcholinesterase tetramerisation domain zf-RING_6 PF14835.6 65 CP020480_00031 - 245 0.12 12.2 0.1 1 2 0.00027 0.61 10.0 0.0 35 53 14 32 7 41 0.83 zf-RING of BARD1-type protein zf-RING_6 PF14835.6 65 CP020480_00031 - 245 0.12 12.2 0.1 2 2 0.79 1.8e+03 -1.1 0.0 9 24 130 145 124 149 0.80 zf-RING of BARD1-type protein KMP11 PF03037.16 90 CP020480_00031 - 245 0.13 13.1 3.2 1 3 0.00014 0.31 11.8 0.0 8 54 18 64 12 92 0.85 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 CP020480_00031 - 245 0.13 13.1 3.2 2 3 0.54 1.2e+03 0.3 0.4 51 51 125 125 84 200 0.62 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 CP020480_00031 - 245 0.13 13.1 3.2 3 3 1.4 3.1e+03 -1.0 0.2 47 47 212 212 167 238 0.59 Kinetoplastid membrane protein 11 PCRF PF03462.18 193 CP020480_00031 - 245 0.22 11.3 12.0 1 2 0.0012 2.7 7.8 0.4 12 82 29 99 22 122 0.53 PCRF domain PCRF PF03462.18 193 CP020480_00031 - 245 0.22 11.3 12.0 2 2 0.0016 3.5 7.5 5.7 20 92 153 232 136 239 0.56 PCRF domain Med8 PF10232.9 232 CP020480_00031 - 245 0.27 10.8 9.0 1 2 0.47 1.1e+03 -1.0 0.2 139 159 46 66 24 101 0.52 Mediator of RNA polymerase II transcription complex subunit 8 Med8 PF10232.9 232 CP020480_00031 - 245 0.27 10.8 9.0 2 2 1.2e-05 0.027 14.1 3.9 123 205 146 228 143 244 0.82 Mediator of RNA polymerase II transcription complex subunit 8 DUF1474 PF07342.11 100 CP020480_00031 - 245 1.3 9.5 5.1 1 3 2.7 6.1e+03 -2.2 0.0 72 76 66 70 32 92 0.60 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 CP020480_00031 - 245 1.3 9.5 5.1 2 3 0.00019 0.42 11.2 1.1 13 88 112 187 100 199 0.81 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 CP020480_00031 - 245 1.3 9.5 5.1 3 3 1.4 3.1e+03 -1.3 0.0 46 66 207 227 190 236 0.73 Protein of unknown function (DUF1474) Phage_pRha PF09669.10 88 CP020480_00032 - 206 1.4e-29 102.4 0.0 1 1 1.3e-33 2.4e-29 101.7 0.0 2 88 26 124 25 124 0.90 Phage regulatory protein Rha (Phage_pRha) CagE_TrbE_VirB PF03135.14 206 CP020480_00033 - 923 2.5e-43 148.6 0.5 1 1 6.9e-47 6.2e-43 147.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP020480_00033 - 923 1.2e-19 70.3 2.0 1 1 2.4e-23 2.1e-19 69.5 2.0 3 83 4 84 2 85 0.95 Type IV secretory pathway, VirB3-like protein TrbC PF04956.13 99 CP020480_00034 - 85 2.3e-16 59.8 8.3 1 1 4.1e-20 2.5e-16 59.7 8.3 21 99 5 83 1 83 0.95 TrbC/VIRB2 family ThrE PF06738.12 241 CP020480_00034 - 85 0.025 14.0 2.1 1 1 4.8e-06 0.029 13.8 2.1 90 149 21 79 13 83 0.84 Putative threonine/serine exporter DUF2062 PF09835.9 148 CP020480_00034 - 85 1.4 8.7 7.8 1 1 0.00033 2 8.3 7.3 78 134 35 84 9 85 0.74 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 CP020480_00036 - 128 0.0005 20.2 1.3 1 2 3.4e-08 0.00061 19.9 0.1 5 55 10 71 7 87 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP020480_00036 - 128 0.0005 20.2 1.3 2 2 0.16 2.8e+03 -1.4 0.1 50 63 103 115 89 125 0.60 CRISPR associated protein Cas2 Resolvase PF00239.21 146 CP020480_00037 - 202 1e-32 113.2 0.6 1 1 2.9e-36 1.3e-32 112.9 0.6 2 145 3 144 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP020480_00037 - 202 0.0011 18.6 1.4 1 3 1.1 4.9e+03 -2.6 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP020480_00037 - 202 0.0011 18.6 1.4 2 3 2.8e-05 0.12 12.1 0.1 2 36 117 152 117 154 0.91 Helix-turn-helix domain HTH_38 PF13936.6 44 CP020480_00037 - 202 0.0011 18.6 1.4 3 3 0.007 31 4.4 0.0 9 26 160 177 158 181 0.88 Helix-turn-helix domain Mu-like_Pro PF10123.9 325 CP020480_00037 - 202 0.12 11.9 0.1 1 1 3.5e-05 0.16 11.5 0.1 148 285 24 177 2 187 0.73 Mu-like prophage I protein Pox_A_type_inc PF04508.12 23 CP020480_00037 - 202 8.5 6.4 9.6 1 4 0.77 3.5e+03 -1.8 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP020480_00037 - 202 8.5 6.4 9.6 2 4 4.2e-05 0.19 11.6 0.8 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP020480_00037 - 202 8.5 6.4 9.6 3 4 2.1 9.5e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP020480_00037 - 202 8.5 6.4 9.6 4 4 1.2 5.4e+03 -2.4 0.0 13 19 168 174 168 175 0.85 Viral A-type inclusion protein repeat SseC PF04888.12 317 CP020480_00038 - 136 0.0012 18.6 1.4 1 2 3.3e-07 0.0012 18.6 1.4 27 77 8 57 6 60 0.94 Secretion system effector C (SseC) like family SseC PF04888.12 317 CP020480_00038 - 136 0.0012 18.6 1.4 2 2 2.1 7.5e+03 -3.8 4.1 58 70 95 107 93 110 0.75 Secretion system effector C (SseC) like family Leu_Phe_trans PF03588.14 169 CP020480_00038 - 136 0.034 13.7 0.1 1 1 1.3e-05 0.048 13.2 0.1 76 120 5 48 1 54 0.91 Leucyl/phenylalanyl-tRNA protein transferase T2SSF PF00482.23 125 CP020480_00038 - 136 0.18 11.8 0.1 1 2 5e-05 0.18 11.8 0.1 85 123 17 55 13 57 0.88 Type II secretion system (T2SS), protein F T2SSF PF00482.23 125 CP020480_00038 - 136 0.18 11.8 0.1 2 2 0.27 9.9e+02 -0.3 1.5 106 121 99 114 86 116 0.56 Type II secretion system (T2SS), protein F DUF3185 PF11381.8 59 CP020480_00038 - 136 0.19 11.7 9.4 1 3 0.0004 1.4 9.0 0.0 37 57 26 46 9 56 0.86 Protein of unknown function (DUF3185) DUF3185 PF11381.8 59 CP020480_00038 - 136 0.19 11.7 9.4 2 3 0.077 2.8e+02 1.6 1.2 1 10 98 107 98 112 0.83 Protein of unknown function (DUF3185) DUF3185 PF11381.8 59 CP020480_00038 - 136 0.19 11.7 9.4 3 3 0.01 36 4.5 1.2 8 17 123 132 121 136 0.86 Protein of unknown function (DUF3185) DUF2207 PF09972.9 492 CP020480_00038 - 136 6.4 5.4 16.4 1 2 2.5e-05 0.089 11.5 1.0 360 418 7 69 1 86 0.43 Predicted membrane protein (DUF2207) DUF2207 PF09972.9 492 CP020480_00038 - 136 6.4 5.4 16.4 2 2 0.19 6.7e+02 -1.2 9.3 383 419 93 129 73 135 0.49 Predicted membrane protein (DUF2207) AAA_25 PF13481.6 194 CP020480_00039 - 597 6.7e-16 58.4 0.0 1 1 4.5e-19 1.3e-15 57.5 0.0 30 193 30 175 15 176 0.84 AAA domain DnaB_C PF03796.15 255 CP020480_00039 - 597 0.00036 20.0 0.0 1 1 7e-07 0.0021 17.4 0.0 14 111 28 130 19 179 0.82 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP020480_00039 - 597 0.0014 18.4 0.0 1 2 5.8e-06 0.017 14.8 0.0 45 87 31 73 16 86 0.87 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP020480_00039 - 597 0.0014 18.4 0.0 2 2 0.18 5.3e+02 0.2 0.0 97 118 109 130 97 169 0.73 IstB-like ATP binding protein ATPase PF06745.13 231 CP020480_00039 - 597 0.012 15.0 0.0 1 2 1.5e-05 0.044 13.1 0.0 16 71 30 84 24 214 0.87 KaiC ATPase PF06745.13 231 CP020480_00039 - 597 0.012 15.0 0.0 2 2 1 3e+03 -2.7 0.0 137 160 329 352 322 356 0.83 KaiC AAA PF00004.29 132 CP020480_00039 - 597 0.076 13.4 0.3 1 3 0.0003 0.89 10.0 0.0 2 105 37 166 36 177 0.64 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP020480_00039 - 597 0.076 13.4 0.3 2 3 0.36 1.1e+03 0.0 0.0 55 74 417 434 380 456 0.77 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP020480_00039 - 597 0.076 13.4 0.3 3 3 4.8 1.4e+04 -3.6 0.0 23 46 495 520 475 526 0.66 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 CP020480_00039 - 597 0.19 11.8 2.8 1 1 0.00056 1.7 8.7 2.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain Toprim_3 PF13362.6 95 CP020480_00040 - 376 4.6e-09 36.5 0.0 1 1 8.4e-13 7.5e-09 35.8 0.0 3 94 264 365 262 366 0.83 Toprim domain Toprim_4 PF13662.6 89 CP020480_00040 - 376 0.001 19.5 0.1 1 1 2.5e-07 0.0023 18.4 0.1 2 83 262 337 261 341 0.89 Toprim domain Fic PF02661.18 97 CP020480_00041 - 244 3.3e-17 63.2 0.1 1 2 5.1e-21 9.2e-17 61.7 0.0 2 96 80 180 79 181 0.93 Fic/DOC family Fic PF02661.18 97 CP020480_00041 - 244 3.3e-17 63.2 0.1 2 2 0.34 6.1e+03 -1.8 0.0 37 57 200 220 190 232 0.60 Fic/DOC family MAS20 PF02064.15 129 CP020480_00042 - 230 0.22 11.6 7.6 1 2 1.6e-05 0.28 11.3 0.1 61 97 77 109 53 133 0.69 MAS20 protein import receptor MAS20 PF02064.15 129 CP020480_00042 - 230 0.22 11.6 7.6 2 2 0.019 3.5e+02 1.3 4.4 31 61 179 211 171 227 0.43 MAS20 protein import receptor ANAPC4 PF12896.7 204 CP020480_00043 - 101 0.027 14.0 0.1 1 1 3.8e-06 0.034 13.6 0.1 45 88 28 70 22 81 0.92 Anaphase-promoting complex, cyclosome, subunit 4 MSG PF02349.15 75 CP020480_00043 - 101 0.071 13.3 4.6 1 1 1e-05 0.094 12.9 4.6 18 65 29 79 21 84 0.80 Major surface glycoprotein EssA PF10661.9 148 CP020480_00044 - 80 0.18 11.6 8.8 1 1 9e-06 0.16 11.8 7.9 39 76 4 41 2 59 0.83 WXG100 protein secretion system (Wss), protein EssA GTP_EFTU PF00009.27 194 CP020775_00001 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP020775_00001 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP020775_00001 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP020775_00001 - 639 1.2e-16 60.5 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP020775_00001 - 639 3e-12 46.4 0.1 1 1 3.5e-15 6.9e-12 45.3 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP020775_00001 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP020775_00001 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP020775_00001 - 639 0.019 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP020775_00001 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP020775_00001 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family APH PF01636.23 240 CP020775_00002 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 CP020775_00002 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 CP020775_00002 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 CP020775_00002 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family W2 PF02020.18 79 CP020775_00003 - 266 0.02 15.0 0.1 1 2 0.23 4.1e+03 -2.0 0.0 43 65 155 177 150 179 0.61 eIF4-gamma/eIF5/eIF2-epsilon W2 PF02020.18 79 CP020775_00003 - 266 0.02 15.0 0.1 2 2 3.4e-06 0.061 13.5 0.0 38 77 180 240 176 242 0.86 eIF4-gamma/eIF5/eIF2-epsilon Lip_prot_lig_C PF10437.9 85 CP020775_00004 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 CP020775_00004 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 CP020775_00004 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP020775_00004 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain LysE PF01810.18 193 CP020775_00005 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 CP020775_00005 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP020775_00005 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 CP020775_00005 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 CP020775_00005 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 CP020775_00005 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 CP020775_00005 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 CP020775_00005 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 CP020775_00005 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP020775_00005 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP020775_00005 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 CP020775_00005 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 CP020775_00006 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP020775_00006 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP020775_00006 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP020775_00006 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP020775_00006 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP020775_00006 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 CP020775_00007 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP020775_00007 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 CP020775_00008 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP020775_00008 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP020775_00008 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP020775_00008 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP020775_00008 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP020775_00008 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 CP020775_00009 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 CP020775_00010 - 1931 3e-16 59.1 2.6 1 3 1.1e-19 4.1e-16 58.6 0.1 56 245 1016 1272 934 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP020775_00010 - 1931 3e-16 59.1 2.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP020775_00010 - 1931 3e-16 59.1 2.6 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1875 1923 1845 1924 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 CP020775_00010 - 1931 4.9e-08 33.2 8.3 1 2 1.4e-11 4.9e-08 33.2 8.3 2 148 999 1211 998 1242 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP020775_00010 - 1931 4.9e-08 33.2 8.3 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1798 1909 1724 1931 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP020775_00010 - 1931 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1076 1104 1028 1108 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP020775_00010 - 1931 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP020775_00010 - 1931 8.9e-06 25.6 1.8 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1003 1108 1002 1204 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 CP020775_00010 - 1931 8.9e-06 25.6 1.8 2 2 0.12 4.2e+02 0.6 0.0 119 150 1882 1915 1827 1930 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP020775_00010 - 1931 3.7e-05 24.2 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 371 471 369 474 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP020775_00010 - 1931 3.7e-05 24.2 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 CP020775_00011 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 CP020775_00011 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 CP020775_00011 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 CP020775_00011 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) Acetyltransf_7 PF13508.7 76 CP020775_00012 - 234 0.0002 21.7 0.0 1 1 6.3e-08 0.00038 20.8 0.0 29 75 79 143 36 144 0.68 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 CP020775_00012 - 234 0.0029 17.8 0.0 1 1 1.2e-06 0.0072 16.5 0.0 64 92 81 109 56 142 0.78 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 CP020775_00012 - 234 0.0083 16.2 0.3 1 1 2.6e-06 0.015 15.3 0.3 24 67 171 214 154 218 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Relaxase PF03432.14 242 CP020775_00013 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP020775_00013 - 462 4.7e-10 39.5 7.4 2 2 0.0071 1.3e+02 2.0 5.4 119 183 326 395 318 430 0.69 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 CP020775_00014 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP020775_00014 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP020775_00014 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP020775_00014 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP020775_00014 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP020775_00014 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP020775_00014 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 CP020775_00014 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP020775_00014 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 CP020775_00014 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP020775_00014 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 CP020775_00015 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP020775_00015 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 CP020775_00015 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 CP020775_00015 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 CP020775_00015 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 CP020775_00017 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 CP020775_00017 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 CP020775_00018 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 CP020775_00018 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 CP020775_00018 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 CP020775_00018 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP020775_00018 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 CP020775_00019 - 92 0.0072 16.3 0.0 1 1 7.4e-07 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) Sdh_cyt PF01127.22 121 CP020775_00020 - 91 0.0019 18.2 0.5 1 1 3.8e-07 0.0023 18.0 0.5 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 CP020775_00020 - 91 0.14 12.5 3.0 1 1 3.1e-05 0.19 12.1 3.0 6 55 12 74 10 90 0.67 2TM domain DUF2633 PF11119.8 57 CP020775_00020 - 91 1.1 9.2 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 CP020775_00022 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system AAA_25 PF13481.6 194 CP020775_00023 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 CP020775_00023 - 597 0.00073 19.0 0.0 1 2 1.6e-06 0.0042 16.5 0.0 16 117 30 136 23 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP020775_00023 - 597 0.00073 19.0 0.0 2 2 0.014 37 3.5 0.0 123 183 114 176 98 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP020775_00023 - 597 0.0032 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP020775_00023 - 597 0.0032 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 CP020775_00023 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP020775_00023 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 CP020775_00023 - 597 0.028 13.8 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 CP020775_00023 - 597 0.028 13.8 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 CP020775_00023 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 CP020775_00023 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 CP020775_00023 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 CP020775_00024 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP020775_00024 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP020775_00024 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 CP020775_00024 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP020775_00024 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP020775_00024 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP020775_00024 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 CP020775_00024 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP020775_00024 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP020775_00024 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 CP020775_00025 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP020775_00025 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 CP020775_00025 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 CP020775_00027 - 73 3.4e-11 43.2 3.7 1 1 4.5e-15 4e-11 43.0 3.7 33 99 5 71 2 71 0.95 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP020775_00027 - 73 0.12 12.2 4.4 1 1 2e-05 0.18 11.6 4.4 78 135 23 73 11 73 0.64 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 CP020775_00028 - 922 1.7e-50 172.0 0.4 1 1 6.5e-54 3.9e-50 170.8 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP020775_00028 - 922 7.2e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 CP020775_00028 - 922 0.048 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 CP020775_00029 - 185 6.6e-30 103.5 0.0 1 1 1.7e-33 1e-29 102.9 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 CP020775_00029 - 185 0.0051 16.9 0.0 1 1 1.8e-06 0.011 15.9 0.0 23 90 27 94 23 96 0.94 Uncharacterized protein conserved in archaea (DUF2250) DUF5512 PF17631.2 139 CP020775_00029 - 185 0.094 12.7 0.0 1 1 3.5e-05 0.21 11.6 0.0 77 131 80 130 61 134 0.85 Family of unknown function (DUF5512) FapA PF03961.13 454 CP020775_00030 - 226 0.0039 15.9 6.9 1 1 1.3e-06 0.0039 15.9 6.9 332 412 3 89 1 140 0.82 Flagellar Assembly Protein A Ax_dynein_light PF10211.9 187 CP020775_00030 - 226 0.028 14.3 4.0 1 2 9.5e-06 0.028 14.3 4.0 121 182 3 64 1 69 0.87 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP020775_00030 - 226 0.028 14.3 4.0 2 2 0.26 7.8e+02 -0.1 1.0 116 116 194 194 128 226 0.55 Axonemal dynein light chain Fib_alpha PF08702.10 143 CP020775_00030 - 226 0.6 10.3 12.2 1 3 2e-05 0.061 13.5 4.9 30 97 3 67 1 87 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP020775_00030 - 226 0.6 10.3 12.2 2 3 0.84 2.5e+03 -1.4 0.0 82 121 109 149 79 160 0.62 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP020775_00030 - 226 0.6 10.3 12.2 3 3 0.2 6.1e+02 0.5 0.2 34 56 196 218 178 225 0.65 Fibrinogen alpha/beta chain family DivIC PF04977.15 80 CP020775_00030 - 226 1.7 8.4 11.6 1 3 0.00031 0.92 9.3 2.0 21 52 5 36 2 48 0.84 Septum formation initiator DivIC PF04977.15 80 CP020775_00030 - 226 1.7 8.4 11.6 2 3 0.011 32 4.4 0.1 35 65 55 85 40 86 0.82 Septum formation initiator DivIC PF04977.15 80 CP020775_00030 - 226 1.7 8.4 11.6 3 3 0.47 1.4e+03 -0.9 0.5 21 41 194 214 188 223 0.73 Septum formation initiator Striatin PF08232.12 155 CP020775_00030 - 226 4.6 7.8 9.6 1 1 0.0047 14 6.2 9.6 29 88 5 69 3 225 0.72 Striatin family Syntaxin-6_N PF09177.11 99 CP020775_00030 - 226 9.3 6.9 10.2 1 2 0.00059 1.8 9.2 4.5 44 70 4 46 2 87 0.71 Syntaxin 6, N-terminal Syntaxin-6_N PF09177.11 99 CP020775_00030 - 226 9.3 6.9 10.2 2 2 0.58 1.7e+03 -0.4 0.3 47 47 196 196 140 225 0.54 Syntaxin 6, N-terminal SSB PF00436.25 104 CP020775_00032 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 CP020775_00033 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP020775_00033 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP020775_00033 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP020775_00033 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP020775_00033 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP020775_00033 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP020775_00033 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 CP020775_00034 - 328 8.6e-29 101.4 13.7 1 1 4.7e-32 1.2e-28 100.9 13.7 1 194 94 298 94 300 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 CP020775_00034 - 328 0.006 16.7 1.1 1 3 1 2.6e+03 -1.4 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP020775_00034 - 328 0.006 16.7 1.1 2 3 8.3e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP020775_00034 - 328 0.006 16.7 1.1 3 3 4.5 1.1e+04 -3.4 0.0 61 77 301 317 292 325 0.69 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 CP020775_00034 - 328 0.018 15.7 0.9 1 2 2.3 5.9e+03 -2.1 0.0 54 72 123 141 102 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP020775_00034 - 328 0.018 15.7 0.9 2 2 1.4e-05 0.036 14.7 0.2 31 84 208 270 197 308 0.84 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 CP020775_00034 - 328 0.041 14.6 11.0 1 2 0.061 1.6e+02 3.0 0.3 51 135 110 145 38 182 0.68 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP020775_00034 - 328 0.041 14.6 11.0 2 2 1.2e-05 0.031 15.0 4.9 49 124 225 314 205 320 0.70 Apoptosis antagonizing transcription factor DUF3752 PF12572.8 152 CP020775_00034 - 328 1.4 9.5 6.4 1 2 0.0038 9.6 6.7 0.3 21 49 106 136 98 152 0.70 Protein of unknown function (DUF3752) DUF3752 PF12572.8 152 CP020775_00034 - 328 1.4 9.5 6.4 2 2 0.011 29 5.2 1.2 33 104 233 318 218 327 0.70 Protein of unknown function (DUF3752) THOC7 PF05615.13 132 CP020775_00034 - 328 2.8 8.2 12.1 1 2 0.00065 1.7 9.0 0.2 57 107 101 151 98 180 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 CP020775_00034 - 328 2.8 8.2 12.1 2 2 0.13 3.4e+02 1.5 6.8 15 91 230 312 215 327 0.70 Tho complex subunit 7 Snapin_Pallidin PF14712.6 90 CP020775_00034 - 328 4.8 7.7 10.3 1 2 0.62 1.6e+03 -0.4 0.1 40 72 111 142 99 147 0.63 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 CP020775_00034 - 328 4.8 7.7 10.3 2 2 0.00076 1.9 8.9 5.5 30 82 239 292 209 299 0.84 Snapin/Pallidin TrbL PF04610.14 215 CP020775_00035 - 330 3.3e-29 102.2 32.7 1 2 5.5e-33 3.3e-29 102.2 32.7 1 214 38 250 38 251 0.92 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP020775_00035 - 330 3.3e-29 102.2 32.7 2 2 0.16 9.4e+02 -0.6 0.1 55 91 281 327 256 330 0.61 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP020775_00035 - 330 0.087 12.6 1.7 1 2 0.078 4.6e+02 0.7 0.2 33 66 62 102 58 116 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP020775_00035 - 330 0.087 12.6 1.7 2 2 8.3e-05 0.49 10.2 0.1 27 81 230 286 198 298 0.73 T-cell leukemia translocation-altered AIM3 PF17096.5 88 CP020775_00035 - 330 1.7 9.6 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 297 327 290 329 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 CP020775_00036 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CP020775_00036 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 CP020775_00037 - 219 1.6e-52 178.5 0.5 1 1 1.9e-56 1.7e-52 178.4 0.5 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 CP020775_00037 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 CP020775_00038 - 297 9.4e-56 188.9 1.6 1 1 1.7e-59 1.6e-55 188.2 1.6 2 211 31 272 30 272 0.92 Conjugal transfer protein Rho_RNA_bind PF07497.12 73 CP020775_00038 - 297 0.074 12.9 0.0 1 2 1.4 1.3e+04 -3.8 0.0 9 22 79 92 77 93 0.77 Rho termination factor, RNA-binding domain Rho_RNA_bind PF07497.12 73 CP020775_00038 - 297 0.074 12.9 0.0 2 2 2.2e-05 0.2 11.5 0.0 21 49 242 270 233 289 0.84 Rho termination factor, RNA-binding domain TrbI PF03743.14 187 CP020775_00039 - 393 7.4e-48 162.9 0.1 1 2 0.76 6.9e+03 -3.3 0.3 136 154 141 167 120 173 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 CP020775_00039 - 393 7.4e-48 162.9 0.1 2 2 8.2e-52 7.4e-48 162.9 0.1 1 187 196 377 196 377 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP020775_00039 - 393 0.044 12.9 0.1 1 1 7.7e-06 0.069 12.2 0.1 29 81 322 374 303 379 0.85 HaeIII restriction endonuclease T2SSE PF00437.20 273 CP020775_00040 - 335 7.7e-55 185.9 0.0 1 1 1.5e-57 8.9e-55 185.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP020775_00040 - 335 7.4e-05 23.3 0.0 1 1 2.6e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP020775_00040 - 335 0.00012 21.6 0.0 1 1 3e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP020775_00040 - 335 0.00028 20.5 0.0 1 1 8.8e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP020775_00040 - 335 0.0014 18.9 0.0 1 1 4.5e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 CP020775_00040 - 335 0.0014 18.4 0.0 1 1 3.9e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 CP020775_00040 - 335 0.0023 17.7 0.0 1 1 9.2e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 CP020775_00040 - 335 0.0035 17.3 0.0 1 1 1.2e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP020775_00040 - 335 0.0055 15.7 0.0 1 1 1.3e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 CP020775_00040 - 335 0.0073 16.2 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP020775_00040 - 335 0.0087 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP020775_00040 - 335 0.0092 15.9 0.0 1 1 2.3e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 CP020775_00040 - 335 0.019 15.1 0.0 1 1 6.1e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain AAA_14 PF13173.6 131 CP020775_00040 - 335 0.02 14.9 0.1 1 2 3 1.8e+03 -1.1 0.0 73 104 35 65 15 73 0.83 AAA domain AAA_14 PF13173.6 131 CP020775_00040 - 335 0.02 14.9 0.1 2 2 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain TrwB_AAD_bind PF10412.9 386 CP020775_00040 - 335 0.021 13.8 0.0 1 1 5.9e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.6 61 CP020775_00040 - 335 0.024 14.4 0.0 1 1 8.8e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain ResIII PF04851.15 171 CP020775_00040 - 335 0.026 14.5 0.0 1 1 9.1e-05 0.053 13.5 0.0 5 50 147 186 132 244 0.73 Type III restriction enzyme, res subunit Sigma54_activat PF00158.26 168 CP020775_00040 - 335 0.026 14.2 0.0 1 1 9.3e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 CP020775_00040 - 335 0.031 13.7 0.0 1 1 0.0001 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein ATP_bind_1 PF03029.17 241 CP020775_00040 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 CP020775_00040 - 335 0.045 14.1 0.0 1 1 0.00018 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 CP020775_00040 - 335 0.045 13.0 0.0 1 1 0.00013 0.077 12.3 0.0 14 49 158 193 146 207 0.84 Zeta toxin PRK PF00485.18 197 CP020775_00040 - 335 0.057 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP020775_00040 - 335 0.065 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP020775_00040 - 335 0.074 13.4 0.0 1 1 0.00019 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 CP020775_00040 - 335 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 CP020775_00040 - 335 0.1 12.6 0.5 1 1 0.00042 0.25 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 CP020775_00040 - 335 0.11 12.4 0.1 1 1 0.0004 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP020775_00040 - 335 0.15 11.7 0.0 1 1 0.00041 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP020775_00040 - 335 0.15 11.8 0.0 1 1 0.00042 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 CP020775_00040 - 335 0.44 11.0 4.2 1 2 2.5 1.5e+03 -0.5 0.1 68 130 84 150 40 162 0.62 AAA domain AAA_23 PF13476.6 200 CP020775_00040 - 335 0.44 11.0 4.2 2 2 0.00057 0.33 11.4 1.4 22 37 163 178 151 184 0.88 AAA domain T4SS-DNA_transf PF02534.14 469 CP020775_00041 - 603 8.4e-104 348.0 0.1 1 1 2.6e-107 1.1e-103 347.5 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP020775_00041 - 603 3.5e-24 85.2 0.0 1 1 1.5e-27 6.8e-24 84.3 0.0 2 125 406 528 405 529 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP020775_00041 - 603 3.2e-15 55.9 0.0 1 2 1.6e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP020775_00041 - 603 3.2e-15 55.9 0.0 2 2 1.3e-13 5.8e-10 38.6 0.0 187 369 347 531 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 CP020775_00041 - 603 0.19 11.8 0.2 1 1 7.4e-05 0.33 11.0 0.2 34 93 7 87 3 100 0.73 Putative Actinobacterial Holin-X, holin superfamily III Cag12 PF13117.6 97 CP020775_00042 - 143 2.9e-16 59.8 0.3 1 1 4.1e-20 3.7e-16 59.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 CP020775_00042 - 143 0.078 12.8 0.4 1 1 2.3e-05 0.2 11.4 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 CP020775_00043 - 252 2.4e-38 131.5 1.9 1 1 3.5e-42 3.1e-38 131.2 1.9 1 154 25 190 25 192 0.88 TrbM HpaB PF03241.13 202 CP020775_00043 - 252 0.21 10.6 0.1 1 2 0.047 4.2e+02 -0.1 0.0 20 39 17 36 4 37 0.76 4-hydroxyphenylacetate 3-hydroxylase C terminal HpaB PF03241.13 202 CP020775_00043 - 252 0.21 10.6 0.1 2 2 0.00014 1.3 8.1 0.0 57 101 117 161 105 164 0.90 4-hydroxyphenylacetate 3-hydroxylase C terminal PRELI PF04707.14 157 CP020775_00044 - 265 0.041 13.7 0.4 1 2 0.62 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 CP020775_00044 - 265 0.041 13.7 0.4 2 2 4.6e-06 0.041 13.7 0.4 96 155 83 147 69 149 0.85 PRELI-like family Rsd_AlgQ PF04353.13 150 CP020775_00044 - 265 0.82 9.6 6.3 1 3 0.22 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP020775_00044 - 265 0.82 9.6 6.3 2 3 2.6e-05 0.24 11.4 1.9 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP020775_00044 - 265 0.82 9.6 6.3 3 3 0.9 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ KH_5 PF13184.6 69 CP020775_00045 - 45 0.00035 20.6 0.5 1 1 2.2e-08 0.00039 20.5 0.5 4 41 2 39 1 40 0.97 NusA-like KH domain CdhD PF03599.16 386 CP020775_00046 - 206 0.0071 15.1 0.0 1 1 1.9e-06 0.012 14.4 0.0 283 358 11 87 2 96 0.87 CO dehydrogenase/acetyl-CoA synthase delta subunit Redoxin PF08534.10 147 CP020775_00046 - 206 0.028 14.1 0.9 1 2 0.082 4.9e+02 0.4 0.1 119 146 11 36 4 37 0.82 Redoxin Redoxin PF08534.10 147 CP020775_00046 - 206 0.028 14.1 0.9 2 2 3e-05 0.18 11.5 0.1 49 76 144 173 138 191 0.79 Redoxin YnfE PF17452.2 78 CP020775_00046 - 206 0.12 12.6 0.1 1 3 2.1e-05 0.12 12.6 0.1 11 33 10 32 5 47 0.88 Uncharacterized YnfE-like YnfE PF17452.2 78 CP020775_00046 - 206 0.12 12.6 0.1 2 3 0.31 1.8e+03 -0.7 0.3 36 50 143 157 136 185 0.64 Uncharacterized YnfE-like YnfE PF17452.2 78 CP020775_00046 - 206 0.12 12.6 0.1 3 3 0.84 5e+03 -2.1 1.5 26 38 184 195 170 205 0.48 Uncharacterized YnfE-like DUF1461 PF07314.11 189 CP020775_00047 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) Topoisom_bac PF01131.20 413 CP020775_00048 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP020775_00048 - 730 6.3e-12 45.6 2.6 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP020775_00048 - 730 6.3e-12 45.6 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 CP020775_00048 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP020775_00048 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP020775_00048 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP020775_00048 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP020775_00048 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CP020775_00048 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP020775_00048 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CP020775_00048 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP020775_00048 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 CP020775_00048 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 CP020775_00048 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 CP020775_00048 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP020775_00048 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CP020775_00048 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP020775_00048 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 CP020775_00048 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 CP020775_00048 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP020775_00048 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 CP020775_00048 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP020775_00048 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP020775_00048 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 CP020775_00048 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 CP020775_00048 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 CP020775_00048 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP020775_00048 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 CP020775_00048 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 CP020775_00048 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 CP020775_00048 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 CP020775_00048 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 CP020775_00048 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 CP020775_00048 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 CP020775_00049 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP020775_00049 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain HicB_lk_antitox PF15919.5 123 CP022078_00002 - 72 3.6e-09 36.8 0.0 1 1 4.2e-13 3.8e-09 36.7 0.0 3 60 5 61 3 71 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 CP022078_00002 - 72 0.065 12.6 0.0 1 1 7.9e-06 0.071 12.5 0.0 12 60 21 69 15 72 0.92 IRSp53/MIM homology domain AAA_25 PF13481.6 194 CP022078_00003 - 597 1.7e-15 57.1 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 CP022078_00003 - 597 0.00083 18.8 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP022078_00003 - 597 0.00083 18.8 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP022078_00003 - 597 0.0013 18.5 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP022078_00003 - 597 0.0013 18.5 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 CP022078_00003 - 597 0.003 17.3 1.1 1 2 3e-06 0.009 15.7 0.2 5 121 36 171 32 187 0.69 AAA domain AAA_24 PF13479.6 197 CP022078_00003 - 597 0.003 17.3 1.1 2 2 0.38 1.1e+03 -0.9 0.0 98 150 268 321 210 358 0.78 AAA domain ATPase PF06745.13 231 CP022078_00003 - 597 0.009 15.4 0.0 1 2 2.1e-05 0.062 12.6 0.0 16 70 30 83 25 214 0.86 KaiC ATPase PF06745.13 231 CP022078_00003 - 597 0.009 15.4 0.0 2 2 0.4 1.2e+03 -1.4 0.0 135 160 327 352 318 358 0.83 KaiC CbiA PF01656.23 128 CP022078_00003 - 597 0.19 11.8 1.3 1 1 0.00021 0.63 10.1 1.3 1 29 35 63 35 543 0.94 CobQ/CobB/MinD/ParA nucleotide binding domain GBR_NSP5 PF17580.2 176 CP022078_00004 - 141 0.012 15.5 0.4 1 1 1.1e-06 0.02 14.7 0.4 17 64 34 81 17 89 0.78 Group B Rotavirus Non-structural protein 5 Resolvase PF00239.21 146 CP022078_00006 - 204 2.4e-34 118.5 0.6 1 1 7.4e-38 3.3e-34 118.1 0.6 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP022078_00006 - 204 0.025 14.3 0.6 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP022078_00006 - 204 0.025 14.3 0.6 2 3 0.0021 9.6 6.1 0.0 2 36 117 152 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 CP022078_00006 - 204 0.025 14.3 0.6 3 3 0.0036 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP022078_00006 - 204 0.051 13.6 4.8 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP022078_00006 - 204 0.051 13.6 4.8 2 3 1.5 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP022078_00006 - 204 0.051 13.6 4.8 3 3 0.024 1.1e+02 3.0 0.1 39 55 159 175 153 177 0.91 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 CP022078_00006 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP022078_00006 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP022078_00006 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 CP022078_00007 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP022078_00007 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 CP022078_00007 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 CP022078_00009 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP022078_00009 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 CP022078_00010 - 922 7.6e-52 176.4 0.8 1 1 4.1e-55 1.9e-51 175.1 0.8 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP022078_00010 - 922 1.5e-20 73.2 1.0 1 1 5.8e-24 2.6e-20 72.4 1.0 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 CP022078_00010 - 922 3.8e-07 29.3 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 CP022078_00010 - 922 0.038 14.1 5.5 1 5 0.46 2.1e+03 -1.4 0.1 96 202 139 253 124 278 0.55 Helicase HerA, central domain DUF87 PF01935.17 227 CP022078_00010 - 922 0.038 14.1 5.5 2 5 0.36 1.6e+03 -1.0 0.1 88 126 264 300 242 418 0.70 Helicase HerA, central domain DUF87 PF01935.17 227 CP022078_00010 - 922 0.038 14.1 5.5 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 CP022078_00010 - 922 0.038 14.1 5.5 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 CP022078_00010 - 922 0.038 14.1 5.5 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain Phage_pRha PF09669.10 88 CP022078_00011 - 185 6.7e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 CP022078_00011 - 185 0.0015 18.6 0.0 1 1 8.6e-07 0.0031 17.6 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 CP022078_00011 - 185 0.026 14.1 0.3 1 2 0.05 1.8e+02 1.6 0.1 80 118 33 71 5 80 0.74 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 CP022078_00011 - 185 0.026 14.1 0.3 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 CP022078_00011 - 185 0.081 12.9 0.1 1 1 6.1e-05 0.22 11.5 0.0 77 131 80 130 69 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 CP022078_00011 - 185 0.83 9.7 7.1 1 3 0.019 69 3.6 0.1 40 53 12 25 3 29 0.83 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CP022078_00011 - 185 0.83 9.7 7.1 2 3 0.0022 7.9 6.6 0.9 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 CP022078_00011 - 185 0.83 9.7 7.1 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 DUF3895 PF13034.6 76 CP022078_00012 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 CP022078_00012 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) SSB PF00436.25 104 CP022078_00013 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 CP022078_00014 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP022078_00014 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP022078_00014 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP022078_00014 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP022078_00014 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP022078_00014 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP022078_00014 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 CP022078_00015 - 323 4.7e-28 98.9 14.1 1 1 2.7e-31 6.1e-28 98.6 14.1 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 CP022078_00015 - 323 0.0059 16.7 0.7 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP022078_00015 - 323 0.0059 16.7 0.7 2 2 9.1e-06 0.02 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CP022078_00015 - 323 0.011 16.4 5.4 1 3 0.067 1.5e+02 3.0 0.3 92 135 104 145 41 149 0.59 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP022078_00015 - 323 0.011 16.4 5.4 2 3 0.12 2.6e+02 2.2 0.5 52 135 111 145 93 185 0.58 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP022078_00015 - 323 0.011 16.4 5.4 3 3 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 CP022078_00015 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 CP022078_00015 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 CP022078_00015 - 323 0.069 13.8 0.9 1 2 2.2 4.9e+03 -1.8 0.0 55 72 124 141 101 172 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP022078_00015 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain Allexi_40kDa PF05549.11 271 CP022078_00015 - 323 0.81 9.1 5.0 1 2 0.21 4.8e+02 0.1 0.1 37 123 47 138 33 177 0.61 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 CP022078_00015 - 323 0.81 9.1 5.0 2 2 0.0002 0.46 10.0 1.6 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein THOC7 PF05615.13 132 CP022078_00015 - 323 3 8.1 11.6 1 2 0.00072 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 CP022078_00015 - 323 3 8.1 11.6 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 DHR10 PF18595.1 117 CP022078_00015 - 323 5.7 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 CP022078_00015 - 323 5.7 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain TrbL PF04610.14 215 CP022078_00016 - 332 2.8e-30 105.7 31.4 1 2 4.7e-34 2.8e-30 105.7 31.4 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP022078_00016 - 332 2.8e-30 105.7 31.4 2 2 0.24 1.4e+03 -1.2 0.1 61 91 293 329 260 332 0.58 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP022078_00016 - 332 0.16 11.8 1.2 1 2 0.16 9.4e+02 -0.3 0.1 35 67 67 105 60 118 0.65 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP022078_00016 - 332 0.16 11.8 1.2 2 2 0.00011 0.68 9.8 0.1 28 81 238 288 209 301 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 CP022078_00016 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 CP022078_00017 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CP022078_00017 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 CP022078_00018 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CP022078_00018 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 CP022078_00019 - 295 2e-54 184.5 1.5 1 1 3.7e-58 3.3e-54 183.8 1.5 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CP022078_00019 - 295 0.072 12.9 0.5 1 2 1.8e-05 0.16 11.8 0.0 1 51 1 51 1 66 0.92 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CP022078_00019 - 295 0.072 12.9 0.5 2 2 1.1 9.7e+03 -3.7 0.1 50 62 130 142 124 149 0.68 Domain of unknown function (DUF4354) TrbI PF03743.14 187 CP022078_00020 - 391 3.3e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP022078_00020 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 CP022078_00021 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP022078_00021 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP022078_00021 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP022078_00021 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP022078_00021 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CP022078_00021 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CP022078_00021 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CP022078_00021 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP022078_00021 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CP022078_00021 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP022078_00021 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP022078_00021 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CP022078_00021 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CP022078_00021 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CP022078_00021 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP022078_00021 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CP022078_00021 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CP022078_00021 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CP022078_00021 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CP022078_00021 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CP022078_00021 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP022078_00021 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CP022078_00021 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP022078_00021 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP022078_00021 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CP022078_00021 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CP022078_00021 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 CP022078_00021 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP022078_00021 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP022078_00021 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CP022078_00021 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 CP022078_00021 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 CP022078_00022 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP022078_00022 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP022078_00022 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP022078_00022 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CP022078_00022 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 CP022078_00023 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 CP022078_00023 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 CP022078_00023 - 145 0.08 12.7 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CP022078_00023 - 145 3.9 7.4 5.6 1 2 0.00081 3.6 7.5 2.3 36 49 29 42 2 47 0.91 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CP022078_00023 - 145 3.9 7.4 5.6 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 CP022078_00024 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 CP022078_00025 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 CP022078_00025 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 CP022078_00025 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 CP022078_00025 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP022078_00025 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP022078_00025 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 CP022078_00027 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP022078_00027 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 CP022078_00028 - 676 1.4e-97 327.4 8.2 1 1 6.3e-101 1.9e-97 326.9 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP022078_00028 - 676 3.7e-12 46.4 2.7 1 2 1.9e-15 5.7e-12 45.8 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP022078_00028 - 676 3.7e-12 46.4 2.7 2 2 1.3 3.8e+03 -1.8 0.6 77 77 520 520 476 566 0.60 Toprim domain zf-C4_Topoisom PF01396.19 39 CP022078_00028 - 676 0.05 13.4 2.1 1 1 4.7e-05 0.14 12.0 2.1 2 27 628 656 627 664 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP022078_00028 - 676 0.05 13.9 0.7 1 2 2.9 8.5e+03 -2.9 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP022078_00028 - 676 0.05 13.9 0.7 2 2 2.7e-05 0.079 13.2 0.0 18 35 624 641 614 641 0.76 zinc-ribbon EF-hand_8 PF13833.6 55 CP022078_00028 - 676 0.083 12.8 0.0 1 1 9.3e-05 0.28 11.1 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 CP022078_00028 - 676 0.34 11.1 3.3 1 3 0.59 1.8e+03 -0.8 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP022078_00028 - 676 0.34 11.1 3.3 2 3 1.7 5.2e+03 -2.3 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP022078_00028 - 676 0.34 11.1 3.3 3 3 0.00026 0.78 10.0 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain PcfJ PF14284.6 144 CP022078_00029 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP022078_00029 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 CP022078_00031 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP022078_00031 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP022078_00031 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP022078_00031 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP022078_00031 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP022078_00031 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP022078_00031 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP022078_00031 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP022078_00031 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP022078_00031 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family DUF5442 PF17514.2 107 CP022078_00032 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 CP022078_00032 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 CP022078_00034 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 CP022078_00034 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 CP022078_00034 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 CP022078_00035 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 CP022078_00035 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 CP022078_00035 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP022078_00035 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 CP022078_00036 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CP022078_00036 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 CP022078_00037 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 CP022078_00037 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP022078_00037 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 CP022078_00037 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 CP022078_00037 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 CP022078_00037 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 CP022078_00037 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP022078_00037 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP022078_00037 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 CP022078_00038 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP022078_00038 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP022078_00038 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP022078_00038 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP022078_00038 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP022078_00038 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 CP022078_00039 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP022078_00039 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 CP022078_00040 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP022078_00040 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP022078_00040 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP022078_00040 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP022078_00040 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP022078_00040 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 CP022078_00041 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 CP022078_00042 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP022078_00042 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP022078_00042 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 CP022078_00042 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP022078_00042 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP022078_00042 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP022078_00042 - 1932 9.9e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP022078_00042 - 1932 9.9e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP022078_00042 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 CP022078_00042 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP022078_00042 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP022078_00042 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 CP022078_00043 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 CP022078_00043 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 CP022078_00044 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP022078_00044 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 CP022078_00045 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP022078_00045 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP022078_00045 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP022078_00045 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP022078_00045 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP022078_00045 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP022078_00045 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 CP022078_00045 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP022078_00045 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 CP022078_00045 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP022078_00045 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 CP022078_00046 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 CP022078_00046 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 CP022078_00046 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 CP022078_00046 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 CP022078_00046 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 CP022078_00049 - 410 2.4e-08 34.2 0.1 1 2 1.1 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 CP022078_00049 - 410 2.4e-08 34.2 0.1 2 2 1.1e-11 6.4e-08 32.8 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 CP022078_00049 - 410 0.016 15.4 0.1 1 2 0.018 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 CP022078_00049 - 410 0.016 15.4 0.1 2 2 0.00021 1.2 9.4 0.0 15 83 283 359 277 378 0.81 Retrotransposon gag protein 5_3_exonuc PF01367.20 97 CP022078_00049 - 410 0.33 11.6 2.5 1 2 0.47 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP022078_00049 - 410 0.33 11.6 2.5 2 2 7.8e-05 0.47 11.1 0.4 15 81 322 384 321 405 0.71 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 CP022078_00050 - 87 0.0072 16.3 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 CP022078_00050 - 87 0.0072 16.3 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 CP022078_00050 - 87 0.12 12.4 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain TOPRIM_C PF16898.5 128 CP022078_00051 - 69 0.029 14.7 1.5 1 1 1.7e-06 0.031 14.6 1.5 63 124 8 68 2 69 0.88 C-terminal associated domain of TOPRIM Pkinase PF00069.25 264 CP022078_00052 - 189 4.3e-19 68.9 4.7 1 1 1.1e-22 4.9e-19 68.7 4.7 52 237 1 180 1 189 0.77 Protein kinase domain Pkinase_Tyr PF07714.17 259 CP022078_00052 - 189 3.7e-18 65.8 0.5 1 1 8.2e-22 3.7e-18 65.8 0.5 55 164 1 108 1 185 0.81 Protein tyrosine kinase Pkinase_fungal PF17667.1 408 CP022078_00052 - 189 1.3e-06 27.4 0.6 1 1 3.8e-10 1.7e-06 27.1 0.6 314 364 53 100 37 123 0.79 Fungal protein kinase Kinase-like PF14531.6 288 CP022078_00052 - 189 0.072 12.4 0.0 1 2 4.7e-05 0.21 10.9 0.0 136 186 36 87 18 112 0.78 Kinase-like Kinase-like PF14531.6 288 CP022078_00052 - 189 0.072 12.4 0.0 2 2 0.2 9.2e+02 -1.1 0.0 94 124 120 150 94 179 0.58 Kinase-like W2 PF02020.18 79 CP022471_00001 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 CP022471_00001 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 CP022471_00001 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 CP022471_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 CP022471_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 CP022471_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP022471_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 CP022471_00003 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CP022471_00003 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 CP022471_00004 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 CP022471_00004 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP022471_00004 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 CP022471_00004 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 CP022471_00004 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 CP022471_00004 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 CP022471_00004 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP022471_00004 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP022471_00004 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 CP022471_00005 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP022471_00005 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP022471_00005 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP022471_00005 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP022471_00005 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP022471_00005 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 CP022471_00006 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP022471_00006 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 CP022471_00007 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP022471_00007 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP022471_00007 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP022471_00007 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP022471_00007 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP022471_00007 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 CP022471_00008 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 CP022471_00009 - 1932 1.6e-16 60.0 0.9 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP022471_00009 - 1932 1.6e-16 60.0 0.9 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP022471_00009 - 1932 1.6e-16 60.0 0.9 3 3 1.4 4.8e+03 -4.1 0.0 173 197 1880 1905 1862 1920 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 CP022471_00009 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP022471_00009 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP022471_00009 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.5 36 121 1801 1904 1748 1930 0.60 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP022471_00009 - 1932 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP022471_00009 - 1932 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP022471_00009 - 1932 7.8e-06 25.8 1.5 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 CP022471_00009 - 1932 7.8e-06 25.8 1.5 2 2 0.13 4.8e+02 0.4 0.0 119 152 1883 1921 1829 1929 0.75 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP022471_00009 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP022471_00009 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 CP022471_00010 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 CP022471_00010 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 CP022471_00011 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP022471_00011 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 CP022471_00012 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP022471_00012 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP022471_00012 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP022471_00012 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 CP022471_00012 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP022471_00012 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP022471_00012 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 CP022471_00012 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP022471_00012 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 CP022471_00012 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP022471_00012 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE ESP PF16590.5 91 CP022471_00013 - 93 0.55 10.5 4.6 1 2 0.015 2.7e+02 1.9 0.6 26 71 3 45 2 50 0.63 Exocrine gland-secreting peptide ESP PF16590.5 91 CP022471_00013 - 93 0.55 10.5 4.6 2 2 1.5e-05 0.27 11.5 0.6 26 58 43 78 41 91 0.79 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 CP022471_00015 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 CP022471_00015 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 CP022471_00016 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 CP022471_00016 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 CP022471_00016 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 CP022471_00016 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP022471_00016 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 CP022471_00017 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 CP022471_00017 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) UBA_6 PF18039.1 42 CP022471_00018 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 CP022471_00018 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 CP022471_00018 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 CP022471_00018 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 CP022471_00019 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 CP022471_00019 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 CP022471_00019 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 CP022471_00021 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 CP022471_00022 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 CP022471_00023 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 CP022471_00023 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP022471_00023 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP022471_00023 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP022471_00023 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 CP022471_00023 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP022471_00023 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 CP022471_00023 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 CP022471_00023 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 CP022471_00023 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 CP022471_00023 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 CP022471_00023 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 CP022471_00024 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP022471_00024 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 CP022471_00024 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 CP022471_00024 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP022471_00024 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP022471_00024 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP022471_00024 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 CP022471_00024 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP022471_00024 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 CP022471_00024 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 CP022471_00025 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP022471_00025 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 CP022471_00025 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 CP022471_00027 - 87 3.5e-13 49.6 6.7 1 1 4.5e-17 4e-13 49.4 6.7 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP022471_00027 - 87 0.17 11.8 4.4 1 1 2.6e-05 0.23 11.3 4.4 78 135 37 87 9 87 0.70 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 CP022471_00028 - 922 4.9e-50 170.5 0.5 1 1 1.9e-53 1.2e-49 169.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP022471_00028 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 CP022471_00028 - 922 0.048 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 CP022471_00029 - 188 2e-29 102.0 0.1 1 1 1.9e-33 3.3e-29 101.3 0.1 2 88 24 122 23 122 0.83 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 CP022471_00030 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 CP022471_00030 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 CP022471_00030 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 CP022471_00030 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP022471_00030 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP022471_00030 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 CP022471_00030 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP022471_00030 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 CP022471_00030 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 CP022471_00030 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 CP022471_00030 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 CP022471_00030 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP022471_00030 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 CP022471_00030 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 CP022471_00031 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 CP022471_00032 - 91 0.00046 19.9 6.9 1 2 5.3e-08 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP022471_00032 - 91 0.00046 19.9 6.9 2 2 0.014 1.3e+02 2.5 0.2 31 52 57 78 56 80 0.82 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP022471_00032 - 91 0.0053 17.3 1.0 1 1 6.9e-07 0.0062 17.1 1.0 21 87 9 81 1 85 0.90 FliG N-terminal domain T4SS PF07996.11 197 CP022471_00033 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 CP022471_00033 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP022471_00033 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 CP022471_00033 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP022471_00033 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 CP022471_00033 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 CP022471_00033 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 CP022471_00033 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP022471_00033 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 CP022471_00033 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 CP022471_00033 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 CP022471_00033 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 CP022471_00033 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 CP022471_00033 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 CP022471_00033 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain TrbL PF04610.14 215 CP022471_00034 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP022471_00034 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP022471_00034 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP022471_00034 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 CP022471_00034 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 CP022471_00035 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 CP022471_00035 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 CP022471_00036 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 CP022471_00036 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 CP022471_00037 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 CP022471_00037 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 CP022471_00037 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 CP022471_00038 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP022471_00038 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 CP022471_00039 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP022471_00039 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP022471_00039 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP022471_00039 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP022471_00039 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 CP022471_00039 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 CP022471_00039 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 CP022471_00039 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP022471_00039 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 CP022471_00039 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP022471_00039 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP022471_00039 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 CP022471_00039 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 CP022471_00039 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 CP022471_00039 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 CP022471_00039 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 CP022471_00039 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 CP022471_00039 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 CP022471_00039 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 CP022471_00039 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 CP022471_00039 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 CP022471_00039 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 CP022471_00039 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP022471_00039 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP022471_00039 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 CP022471_00039 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 CP022471_00039 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 CP022471_00039 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 CP022471_00039 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP022471_00039 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 CP022471_00039 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 CP022471_00039 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 CP022471_00040 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP022471_00040 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP022471_00040 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP022471_00040 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 CP022471_00040 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 CP022471_00041 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 CP022471_00041 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 CP022471_00041 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 CP022471_00041 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 CP022471_00041 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 CP022471_00042 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 CP022471_00043 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 CP022471_00043 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 CP022471_00043 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 CP022471_00043 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP022471_00043 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 CP022471_00043 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 CP022471_00045 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 CP022471_00045 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 CP022471_00046 - 730 5.7e-97 325.3 8.0 1 1 7.6e-100 8e-97 324.8 8.0 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP022471_00046 - 730 5.5e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP022471_00046 - 730 5.5e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 CP022471_00046 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP022471_00046 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP022471_00046 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP022471_00046 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP022471_00046 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CP022471_00046 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP022471_00046 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CP022471_00046 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP022471_00046 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 CP022471_00046 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 CP022471_00046 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 CP022471_00046 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP022471_00046 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CP022471_00046 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP022471_00046 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 CP022471_00046 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 CP022471_00046 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP022471_00046 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 CP022471_00046 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP022471_00046 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP022471_00046 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 CP022471_00046 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 CP022471_00046 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 CP022471_00046 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP022471_00046 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 CP022471_00046 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 CP022471_00046 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 CP022471_00046 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 CP022471_00046 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 CP022471_00046 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 CP022471_00046 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 CP022471_00047 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP022471_00047 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 CP022471_00049 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP022471_00049 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP022471_00049 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP022471_00049 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP022471_00049 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP022471_00049 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP022471_00049 - 639 0.00029 21.1 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP022471_00049 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP022471_00049 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP022471_00049 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 CP022471_00049 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 CP022471_00050 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 CP022471_00050 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) PDDEXK_4 PF14281.6 180 CP023447_00001 - 472 3e-38 131.8 13.1 1 3 1.7e-42 3e-38 131.8 13.1 2 176 27 218 26 220 0.94 PD-(D/E)XK nuclease superfamily PDDEXK_4 PF14281.6 180 CP023447_00001 - 472 3e-38 131.8 13.1 2 3 0.0036 65 3.6 0.5 116 170 360 412 327 422 0.83 PD-(D/E)XK nuclease superfamily PDDEXK_4 PF14281.6 180 CP023447_00001 - 472 3e-38 131.8 13.1 3 3 0.18 3.2e+03 -1.9 0.0 18 32 431 445 430 462 0.75 PD-(D/E)XK nuclease superfamily Eco57I PF07669.11 106 CP023447_00002 - 1246 2.1e-19 70.0 0.1 1 1 3.4e-22 1.2e-18 67.5 0.1 3 105 808 917 805 918 0.95 Eco57I restriction-modification methylase TaqI_C PF12950.7 120 CP023447_00002 - 1246 1.8e-12 47.4 1.7 1 4 1.1 4e+03 -2.1 0.3 91 115 263 290 211 322 0.63 TaqI-like C-terminal specificity domain TaqI_C PF12950.7 120 CP023447_00002 - 1246 1.8e-12 47.4 1.7 2 4 1.1 4e+03 -2.2 0.0 75 93 356 374 343 383 0.77 TaqI-like C-terminal specificity domain TaqI_C PF12950.7 120 CP023447_00002 - 1246 1.8e-12 47.4 1.7 3 4 1.2 4.2e+03 -2.2 0.1 5 35 605 637 602 720 0.58 TaqI-like C-terminal specificity domain TaqI_C PF12950.7 120 CP023447_00002 - 1246 1.8e-12 47.4 1.7 4 4 5.1e-16 1.8e-12 47.4 1.7 2 120 1028 1185 1027 1185 0.84 TaqI-like C-terminal specificity domain Mrr_cat PF04471.12 115 CP023447_00002 - 1246 0.018 15.1 0.0 1 2 3.1e-05 0.11 12.5 0.0 16 67 59 118 49 139 0.80 Restriction endonuclease Mrr_cat PF04471.12 115 CP023447_00002 - 1246 0.018 15.1 0.0 2 2 2.6 9.4e+03 -3.4 0.0 79 100 996 1020 989 1037 0.60 Restriction endonuclease ACP_PD PF04336.12 105 CP023447_00002 - 1246 0.019 15.4 0.2 1 2 0.13 4.6e+02 1.3 0.0 1 40 937 980 937 1002 0.68 Acyl carrier protein phosphodiesterase ACP_PD PF04336.12 105 CP023447_00002 - 1246 0.019 15.4 0.2 2 2 0.00034 1.2 9.6 0.1 37 104 1020 1085 1001 1086 0.70 Acyl carrier protein phosphodiesterase DUF4756 PF15948.5 158 CP023447_00002 - 1246 0.41 10.5 7.1 1 2 2.5e-05 0.089 12.6 0.8 8 81 656 729 650 751 0.75 Domain of unknown function (DUF4756) DUF4756 PF15948.5 158 CP023447_00002 - 1246 0.41 10.5 7.1 2 2 0.3 1.1e+03 -0.6 0.8 59 106 1187 1232 1179 1243 0.83 Domain of unknown function (DUF4756) Pentapeptide_3 PF13576.6 48 CP023447_00003 - 663 6.7e-11 42.2 11.9 1 5 0.037 6.6e+02 0.6 0.1 11 19 135 143 120 147 0.69 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 48 CP023447_00003 - 663 6.7e-11 42.2 11.9 2 5 0.0037 66 3.8 2.1 1 33 182 204 158 207 0.60 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 48 CP023447_00003 - 663 6.7e-11 42.2 11.9 3 5 0.08 1.4e+03 -0.5 0.0 27 37 239 250 218 253 0.51 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 48 CP023447_00003 - 663 6.7e-11 42.2 11.9 4 5 3.7e-08 0.00066 19.8 2.3 21 47 260 289 257 290 0.84 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 48 CP023447_00003 - 663 6.7e-11 42.2 11.9 5 5 2.7e-13 4.9e-09 36.2 2.3 1 43 275 318 275 323 0.95 Pentapeptide repeats (9 copies) SIMPL PF04402.14 200 CP023447_00004 - 233 3.7e-14 53.7 0.6 1 1 1.3e-17 4.5e-14 53.4 0.6 1 160 37 205 37 227 0.71 Protein of unknown function (DUF541) DUF4116 PF13475.6 49 CP023447_00004 - 233 0.036 13.8 1.6 1 2 1e-05 0.036 13.8 1.6 11 43 60 95 56 108 0.77 Domain of unknown function (DUF4116) DUF4116 PF13475.6 49 CP023447_00004 - 233 0.036 13.8 1.6 2 2 1.6 5.7e+03 -2.9 0.0 10 23 152 165 150 167 0.71 Domain of unknown function (DUF4116) ATR13 PF16829.5 101 CP023447_00004 - 233 0.081 13.3 0.5 1 2 0.00025 0.88 10.0 0.0 15 82 23 86 12 106 0.82 Avirulence protein ATR13, RxLR effector ATR13 PF16829.5 101 CP023447_00004 - 233 0.081 13.3 0.5 2 2 0.15 5.5e+02 1.0 0.1 28 80 177 228 146 232 0.69 Avirulence protein ATR13, RxLR effector Nudix_N PF12535.8 56 CP023447_00004 - 233 0.1 12.2 0.1 1 1 6e-05 0.22 11.2 0.1 8 47 139 179 136 186 0.85 Hydrolase of X-linked nucleoside diphosphate N terminal DUF3139 PF11337.8 83 CP023447_00004 - 233 0.91 10.2 8.8 1 3 0.14 5e+02 1.4 0.1 9 55 10 49 1 69 0.52 Protein of unknown function (DUF3139) DUF3139 PF11337.8 83 CP023447_00004 - 233 0.91 10.2 8.8 2 3 3.9e-05 0.14 12.8 1.7 35 59 75 99 51 118 0.76 Protein of unknown function (DUF3139) DUF3139 PF11337.8 83 CP023447_00004 - 233 0.91 10.2 8.8 3 3 0.98 3.5e+03 -1.3 0.1 39 82 153 161 119 192 0.64 Protein of unknown function (DUF3139) MFS_1 PF07690.16 353 CP023447_00005 - 400 1.1e-42 146.2 39.9 1 2 2.5e-46 1.1e-42 146.2 39.9 2 351 20 361 19 363 0.91 Major Facilitator Superfamily MFS_1 PF07690.16 353 CP023447_00005 - 400 1.1e-42 146.2 39.9 2 2 0.072 3.2e+02 -0.0 0.9 135 172 360 394 354 400 0.51 Major Facilitator Superfamily Sugar_tr PF00083.24 452 CP023447_00005 - 400 3.9e-10 39.2 8.9 1 3 8.6e-14 3.9e-10 39.2 8.9 17 212 20 211 16 221 0.93 Sugar (and other) transporter Sugar_tr PF00083.24 452 CP023447_00005 - 400 3.9e-10 39.2 8.9 2 3 0.081 3.6e+02 -0.3 3.0 317 361 254 300 198 334 0.65 Sugar (and other) transporter Sugar_tr PF00083.24 452 CP023447_00005 - 400 3.9e-10 39.2 8.9 3 3 4 1.8e+04 -11.9 16.1 385 433 344 392 231 400 0.55 Sugar (and other) transporter MFS_3 PF05977.13 522 CP023447_00005 - 400 2.5e-06 26.2 18.2 1 1 6.6e-10 3e-06 25.9 18.2 60 397 64 398 13 400 0.82 Transmembrane secretion effector MFS_2 PF13347.6 427 CP023447_00005 - 400 1.2e-05 24.0 43.0 1 3 3.3e-06 0.015 13.9 9.7 226 383 16 164 7 166 0.87 MFS/sugar transport protein MFS_2 PF13347.6 427 CP023447_00005 - 400 1.2e-05 24.0 43.0 2 3 1.3e-07 0.00059 18.5 22.9 148 371 144 367 133 370 0.73 MFS/sugar transport protein MFS_2 PF13347.6 427 CP023447_00005 - 400 1.2e-05 24.0 43.0 3 3 0.099 4.4e+02 -0.8 2.0 151 189 356 393 338 399 0.48 MFS/sugar transport protein DUF2130 PF09903.9 257 CP023447_00006 - 449 1.7e-46 158.6 15.9 1 4 0.095 4.3e+02 -0.0 2.8 220 255 30 68 15 74 0.52 Uncharacterized protein conserved in bacteria (DUF2130) DUF2130 PF09903.9 257 CP023447_00006 - 449 1.7e-46 158.6 15.9 2 4 4 1.8e+04 -9.4 20.8 171 229 76 131 57 151 0.53 Uncharacterized protein conserved in bacteria (DUF2130) DUF2130 PF09903.9 257 CP023447_00006 - 449 1.7e-46 158.6 15.9 3 4 4 1.8e+04 -5.7 8.1 166 213 144 191 139 194 0.65 Uncharacterized protein conserved in bacteria (DUF2130) DUF2130 PF09903.9 257 CP023447_00006 - 449 1.7e-46 158.6 15.9 4 4 3.8e-50 1.7e-46 158.6 15.9 3 243 193 421 191 443 0.92 Uncharacterized protein conserved in bacteria (DUF2130) zf-ribbon_3 PF13248.6 26 CP023447_00006 - 449 0.19 11.2 0.9 1 2 6.8e-05 0.3 10.5 0.1 3 26 10 19 5 22 0.58 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP023447_00006 - 449 0.19 11.2 0.9 2 2 1.7 7.6e+03 -3.4 0.0 7 11 268 272 267 273 0.63 zinc-ribbon domain RNA_pol_N PF01194.17 59 CP023447_00006 - 449 0.53 10.6 2.0 1 4 0.00083 3.7 7.9 0.0 5 38 10 62 9 67 0.72 RNA polymerases N / 8 kDa subunit RNA_pol_N PF01194.17 59 CP023447_00006 - 449 0.53 10.6 2.0 2 4 3.7 1.6e+04 -3.8 0.0 13 30 204 221 203 231 0.76 RNA polymerases N / 8 kDa subunit RNA_pol_N PF01194.17 59 CP023447_00006 - 449 0.53 10.6 2.0 3 4 0.91 4.1e+03 -1.8 0.0 26 41 278 293 257 298 0.67 RNA polymerases N / 8 kDa subunit RNA_pol_N PF01194.17 59 CP023447_00006 - 449 0.53 10.6 2.0 4 4 0.64 2.8e+03 -1.3 0.1 14 38 377 409 374 414 0.62 RNA polymerases N / 8 kDa subunit zf-ACC PF17848.1 26 CP023447_00006 - 449 1.6 8.9 5.6 1 3 0.00039 1.7 8.8 0.3 2 11 10 19 10 19 0.87 Acetyl-coA carboxylase zinc finger domain zf-ACC PF17848.1 26 CP023447_00006 - 449 1.6 8.9 5.6 2 3 0.26 1.2e+03 -0.3 0.2 11 21 193 203 191 203 0.86 Acetyl-coA carboxylase zinc finger domain zf-ACC PF17848.1 26 CP023447_00006 - 449 1.6 8.9 5.6 3 3 0.28 1.2e+03 -0.4 0.0 7 13 269 275 268 277 0.90 Acetyl-coA carboxylase zinc finger domain Cytochrom_C PF00034.21 92 CP023447_00007 - 347 3.7e-14 53.6 0.0 1 2 0.0033 8.4 7.6 0.2 10 90 96 171 87 173 0.41 Cytochrome c Cytochrom_C PF00034.21 92 CP023447_00007 - 347 3.7e-14 53.6 0.0 2 2 6.9e-14 1.8e-10 41.8 0.0 3 90 203 287 201 288 0.88 Cytochrome c Cytochrome_CBB3 PF13442.6 67 CP023447_00007 - 347 5.7e-11 42.6 0.0 1 2 0.00052 1.3 9.4 0.0 11 25 94 119 85 168 0.57 Cytochrome C oxidase, cbb3-type, subunit III Cytochrome_CBB3 PF13442.6 67 CP023447_00007 - 347 5.7e-11 42.6 0.0 2 2 1.1e-10 2.8e-07 30.7 0.0 2 67 200 285 199 285 0.73 Cytochrome C oxidase, cbb3-type, subunit III Cytochrome_C7 PF14522.6 73 CP023447_00007 - 347 0.016 15.2 0.0 1 2 0.0012 3.1 7.9 0.0 42 59 89 107 74 126 0.77 Cytochrome c7 and related cytochrome c Cytochrome_C7 PF14522.6 73 CP023447_00007 - 347 0.016 15.2 0.0 2 2 0.0094 24 5.0 0.0 14 22 210 218 191 234 0.67 Cytochrome c7 and related cytochrome c Cytochrom_C550 PF14495.6 136 CP023447_00007 - 347 0.022 14.5 0.7 1 3 0.63 1.6e+03 -1.3 0.0 34 43 95 104 79 114 0.79 Cytochrome c-550 domain Cytochrom_C550 PF14495.6 136 CP023447_00007 - 347 0.022 14.5 0.7 2 3 4.1e-05 0.11 12.3 0.0 27 43 202 218 193 235 0.77 Cytochrome c-550 domain Cytochrom_C550 PF14495.6 136 CP023447_00007 - 347 0.022 14.5 0.7 3 3 1.5 3.9e+03 -2.5 0.0 107 119 273 285 271 287 0.90 Cytochrome c-550 domain Paired_CXXCH_1 PF09699.10 42 CP023447_00007 - 347 0.042 13.6 0.3 1 2 0.0029 7.4 6.4 0.1 24 40 89 105 79 107 0.75 Doubled CXXCH motif (Paired_CXXCH_1) Paired_CXXCH_1 PF09699.10 42 CP023447_00007 - 347 0.042 13.6 0.3 2 2 0.0087 22 4.9 0.0 7 15 210 218 201 233 0.76 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_c3_2 PF14537.6 80 CP023447_00007 - 347 0.094 13.2 0.1 1 2 0.0079 20 5.7 0.0 54 66 91 103 73 112 0.64 Cytochrome c3 Cytochrom_c3_2 PF14537.6 80 CP023447_00007 - 347 0.094 13.2 0.1 2 2 0.012 30 5.2 0.0 22 36 205 219 197 235 0.72 Cytochrome c3 DUF3365 PF11845.8 157 CP023447_00007 - 347 0.19 12.1 0.2 1 2 0.08 2e+02 2.2 0.2 115 126 95 106 24 136 0.85 Protein of unknown function (DUF3365) DUF3365 PF11845.8 157 CP023447_00007 - 347 0.19 12.1 0.2 2 2 0.0015 3.9 7.8 0.0 114 125 207 219 162 234 0.85 Protein of unknown function (DUF3365) Peptidase_S49_N PF08496.10 153 CP023447_00008 - 215 0.034 14.2 0.3 1 1 3.8e-06 0.068 13.2 0.3 8 69 37 99 29 135 0.71 Peptidase family S49 N-terminal GTP_EFTU PF00009.27 194 CP023447_00009 - 602 2.2e-54 184.0 0.4 1 1 2e-57 3.5e-54 183.3 0.4 1 193 2 194 2 195 0.91 Elongation factor Tu GTP binding domain EFG_C PF00679.24 89 CP023447_00009 - 602 2.8e-22 78.6 0.0 1 1 4e-25 7.1e-22 77.2 0.0 3 86 395 478 393 481 0.96 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 74 CP023447_00009 - 602 9.2e-11 42.0 1.5 1 1 1.3e-13 2.4e-10 40.7 1.5 1 72 218 286 218 288 0.92 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 114 CP023447_00009 - 602 8.2e-07 29.1 0.4 1 1 9e-10 1.6e-06 28.2 0.4 2 114 7 128 6 128 0.78 50S ribosome-binding GTPase Septin PF00735.18 281 CP023447_00009 - 602 0.00062 19.1 0.2 1 1 6e-07 0.0011 18.3 0.2 6 75 6 80 4 98 0.76 Septin Dynamin_N PF00350.23 168 CP023447_00009 - 602 0.0046 17.0 0.1 1 1 2.8e-05 0.05 13.7 0.1 62 168 31 129 11 129 0.69 Dynamin family FeoB_N PF02421.18 156 CP023447_00009 - 602 0.011 15.3 0.9 1 3 0.83 1.5e+03 -1.4 0.0 2 22 6 26 5 32 0.83 Ferrous iron transport protein B FeoB_N PF02421.18 156 CP023447_00009 - 602 0.011 15.3 0.9 2 3 0.00011 0.2 11.2 0.2 32 117 52 131 44 171 0.81 Ferrous iron transport protein B FeoB_N PF02421.18 156 CP023447_00009 - 602 0.011 15.3 0.9 3 3 0.4 7.2e+02 -0.4 0.0 101 146 301 346 222 353 0.74 Ferrous iron transport protein B SRPRB PF09439.10 181 CP023447_00009 - 602 0.049 13.1 1.0 1 2 6.8e-05 0.12 11.8 0.1 5 83 6 98 2 102 0.64 Signal recognition particle receptor beta subunit SRPRB PF09439.10 181 CP023447_00009 - 602 0.049 13.1 1.0 2 2 3.4 6.2e+03 -3.6 0.1 131 148 328 345 326 357 0.73 Signal recognition particle receptor beta subunit AIG1 PF04548.16 212 CP023447_00009 - 602 0.058 12.7 0.0 1 1 6.5e-05 0.12 11.7 0.0 32 78 50 96 32 105 0.81 AIG1 family EFG_II PF14492.6 75 CP023447_00009 - 602 0.085 13.0 0.1 1 1 0.00012 0.21 11.7 0.1 18 66 327 374 320 382 0.82 Elongation Factor G, domain II PTS_EIIA_2 PF00359.22 144 CP023447_00010 - 107 0.00096 19.1 2.8 1 1 2.6e-07 0.0016 18.4 2.7 103 142 39 77 11 79 0.86 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FANCI_S2 PF14676.6 164 CP023447_00010 - 107 0.028 14.7 0.9 1 1 6.8e-06 0.04 14.2 0.9 57 115 3 61 1 84 0.85 FANCI solenoid 2 Rotamase PF00639.21 97 CP023447_00010 - 107 0.087 13.8 0.1 1 1 1.9e-05 0.11 13.4 0.1 2 85 9 89 9 93 0.90 PPIC-type PPIASE domain Flg_hook PF02120.16 85 CP023447_00011 - 596 2.2e-14 53.1 1.0 1 2 0.17 3e+03 -1.8 0.0 55 76 146 167 145 169 0.88 Flagellar hook-length control protein FliK Flg_hook PF02120.16 85 CP023447_00011 - 596 2.2e-14 53.1 1.0 2 2 6.7e-18 1.2e-13 50.7 0.3 6 84 483 560 479 562 0.93 Flagellar hook-length control protein FliK FlgD_ig PF13860.6 79 CP023447_00012 - 294 1.8e-18 66.1 0.1 1 1 8.7e-22 5.2e-18 64.7 0.1 2 78 128 209 127 210 0.93 FlgD Ig-like domain FlgD PF03963.14 75 CP023447_00012 - 294 1.1e-16 60.9 11.6 1 2 1.8e-20 1.1e-16 60.9 11.6 4 74 24 94 8 95 0.80 Flagellar hook capping protein - N-terminal region FlgD PF03963.14 75 CP023447_00012 - 294 1.1e-16 60.9 11.6 2 2 1.1 6.9e+03 -2.5 0.1 63 74 97 108 96 109 0.84 Flagellar hook capping protein - N-terminal region FLgD_tudor PF13861.6 58 CP023447_00012 - 294 1.8e-05 24.9 0.0 1 1 6e-09 3.6e-05 23.9 0.0 2 58 111 248 110 248 0.97 FlgD Tudor-like domain Flg_bbr_C PF06429.13 74 CP023447_00013 - 545 1.2e-19 70.1 4.4 1 2 0.24 1.1e+03 -0.1 0.0 21 44 417 439 401 445 0.72 Flagellar basal body rod FlgEFG protein C-terminal Flg_bbr_C PF06429.13 74 CP023447_00013 - 545 1.2e-19 70.1 4.4 2 2 7.6e-23 3.4e-19 68.7 1.8 1 74 463 543 463 543 0.91 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 31 CP023447_00013 - 545 7.3e-08 32.2 1.9 1 2 6.1e-11 2.7e-07 30.4 1.9 1 31 5 35 5 35 0.90 Flagella basal body rod protein Flg_bb_rod PF00460.20 31 CP023447_00013 - 545 7.3e-08 32.2 1.9 2 2 2.5 1.1e+04 -3.6 0.0 7 17 284 294 284 295 0.84 Flagella basal body rod protein VWA_N PF08399.11 123 CP023447_00013 - 545 0.046 14.2 0.0 1 1 3.4e-05 0.15 12.5 0.0 46 91 162 205 142 212 0.88 VWA N-terminal DUF3659 PF12396.8 61 CP023447_00013 - 545 0.13 12.1 0.2 1 3 0.029 1.3e+02 2.6 0.0 39 57 114 133 109 135 0.82 Protein of unknown function (DUF3659) DUF3659 PF12396.8 61 CP023447_00013 - 545 0.13 12.1 0.2 2 3 0.009 41 4.2 0.0 13 29 345 361 341 374 0.82 Protein of unknown function (DUF3659) DUF3659 PF12396.8 61 CP023447_00013 - 545 0.13 12.1 0.2 3 3 0.22 9.9e+02 -0.2 0.1 38 38 460 460 429 495 0.54 Protein of unknown function (DUF3659) FapA PF03961.13 454 CP023447_00014 - 495 4.3e-54 183.8 24.2 1 1 2.4e-58 4.3e-54 183.8 24.2 46 433 17 424 2 466 0.93 Flagellar Assembly Protein A Ribosomal_L1 PF00687.21 204 CP023447_00015 - 138 0.013 15.2 0.1 1 1 1.7e-06 0.015 15.0 0.1 70 140 31 106 12 126 0.79 Ribosomal protein L1p/L10e family Rep_4 PF05797.11 344 CP023447_00015 - 138 0.021 14.0 0.5 1 1 4.1e-06 0.037 13.1 0.3 20 65 89 134 82 137 0.87 Yeast trans-acting factor (REP1/REP2) Hemerythrin PF01814.23 131 CP023447_00016 - 239 5.9e-08 33.4 3.1 1 2 1.3e-11 5.9e-08 33.4 3.1 6 124 16 125 14 130 0.88 Hemerythrin HHE cation binding domain Hemerythrin PF01814.23 131 CP023447_00016 - 239 5.9e-08 33.4 3.1 2 2 2.6 1.2e+04 -3.2 0.1 38 52 214 228 202 229 0.66 Hemerythrin HHE cation binding domain CC2D2AN-C2 PF15625.6 173 CP023447_00016 - 239 0.09 12.5 0.1 1 2 0.06 2.7e+02 1.2 0.1 62 122 15 76 2 101 0.72 CC2D2A N-terminal C2 domain CC2D2AN-C2 PF15625.6 173 CP023447_00016 - 239 0.09 12.5 0.1 2 2 0.0002 0.88 9.3 0.0 69 125 170 233 151 239 0.73 CC2D2A N-terminal C2 domain PulA_N1 PF17999.1 85 CP023447_00016 - 239 0.57 11.0 10.4 1 3 2.3 1e+04 -2.7 0.1 23 44 20 41 12 46 0.57 Pullulanase N1-terminal domain PulA_N1 PF17999.1 85 CP023447_00016 - 239 0.57 11.0 10.4 2 3 2.2e-05 0.098 13.4 1.8 9 75 57 124 54 131 0.93 Pullulanase N1-terminal domain PulA_N1 PF17999.1 85 CP023447_00016 - 239 0.57 11.0 10.4 3 3 0.041 1.8e+02 2.9 0.2 34 60 147 174 128 180 0.77 Pullulanase N1-terminal domain RPA_interact_C PF14768.6 81 CP023447_00016 - 239 4.5 7.9 9.8 1 3 0.43 1.9e+03 -0.5 0.2 41 51 37 47 13 90 0.59 Replication protein A interacting C-terminal RPA_interact_C PF14768.6 81 CP023447_00016 - 239 4.5 7.9 9.8 2 3 0.0081 36 5.0 0.2 8 28 156 177 153 185 0.75 Replication protein A interacting C-terminal RPA_interact_C PF14768.6 81 CP023447_00016 - 239 4.5 7.9 9.8 3 3 0.00098 4.4 7.9 0.6 8 49 183 228 178 235 0.82 Replication protein A interacting C-terminal Na_sulph_symp PF00939.19 472 CP023447_00017 - 114 3.4e-25 89.0 0.1 1 1 4.4e-29 3.9e-25 88.8 0.1 95 182 1 88 1 98 0.96 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 300 CP023447_00017 - 114 0.014 14.6 0.0 1 1 1.7e-06 0.015 14.5 0.0 47 111 1 68 1 84 0.90 Citrate transporter Na_sulph_symp PF00939.19 472 CP023447_00018 - 71 4e-09 36.0 1.0 1 1 7.6e-13 6.8e-09 35.3 1.0 234 284 10 60 1 65 0.95 Sodium:sulfate symporter transmembrane region ETRAMP PF09716.10 83 CP023447_00018 - 71 0.026 14.6 0.0 1 1 3.3e-06 0.029 14.4 0.0 31 75 23 65 5 69 0.77 Malarial early transcribed membrane protein (ETRAMP) Na_sulph_symp PF00939.19 472 CP023447_00019 - 79 1.9e-14 53.6 4.1 1 1 3.3e-18 1.9e-14 53.6 4.1 280 349 9 78 1 79 0.92 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 300 CP023447_00019 - 79 0.0066 15.7 4.0 1 1 1.4e-06 0.0085 15.3 4.0 207 240 31 78 7 79 0.75 Citrate transporter AGTRAP PF06396.11 148 CP023447_00019 - 79 0.095 12.5 1.3 1 1 1.7e-05 0.1 12.4 1.3 29 92 4 67 1 77 0.84 Angiotensin II, type I receptor-associated protein (AGTRAP) Na_sulph_symp PF00939.19 472 CP023447_00020 - 83 1.9e-14 53.6 11.4 1 1 1.1e-18 1.9e-14 53.6 11.4 395 470 6 81 1 83 0.90 Sodium:sulfate symporter transmembrane region tRNA_Me_trans PF03054.16 356 CP023447_00021 - 338 1.2e-108 363.1 1.7 1 1 5.4e-112 1.4e-108 362.9 1.7 1 356 1 337 1 337 0.96 tRNA methyl transferase ATP_bind_3 PF01171.20 182 CP023447_00021 - 338 5.6e-07 29.5 0.0 1 1 5.6e-10 1.4e-06 28.2 0.0 1 158 2 169 2 174 0.83 PP-loop family ThiI PF02568.14 197 CP023447_00021 - 338 1.4e-06 28.1 0.0 1 2 1.4e-08 3.5e-05 23.5 0.0 5 57 2 56 1 121 0.73 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 CP023447_00021 - 338 1.4e-06 28.1 0.0 2 2 0.044 1.1e+02 2.2 0.0 138 169 150 181 140 192 0.71 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 210 CP023447_00021 - 338 2.5e-06 27.2 0.1 1 1 3.3e-09 8.4e-06 25.4 0.1 1 174 2 171 2 194 0.70 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 242 CP023447_00021 - 338 3.5e-05 23.0 0.0 1 2 1.9e-07 0.00049 19.3 0.0 20 85 2 68 1 117 0.85 NAD synthase NAD_synthase PF02540.17 242 CP023447_00021 - 338 3.5e-05 23.0 0.0 2 2 0.057 1.5e+02 1.4 0.0 148 181 152 185 145 212 0.82 NAD synthase Arginosuc_synth PF00764.19 388 CP023447_00021 - 338 0.00027 20.3 0.0 1 1 1.6e-07 0.00042 19.7 0.0 2 112 5 116 4 125 0.80 Arginosuccinate synthase PAPS_reduct PF01507.19 174 CP023447_00021 - 338 0.031 14.3 0.0 1 1 2e-05 0.052 13.6 0.0 2 150 3 169 2 174 0.81 Phosphoadenosine phosphosulfate reductase family Lysine_decarbox PF03641.14 132 CP023447_00022 - 122 2.8e-25 88.9 0.0 1 1 3.3e-29 2.9e-25 88.9 0.0 16 126 4 113 1 119 0.89 Possible lysine decarboxylase LDcluster4 PF18306.1 157 CP023447_00022 - 122 0.09 12.4 0.0 1 1 1.1e-05 0.098 12.2 0.0 67 116 11 59 2 105 0.70 SLOG cluster4 family LDcluster4 PF18306.1 157 CP023447_00023 - 75 7.8e-06 25.6 0.1 1 1 1.6e-09 9.3e-06 25.3 0.1 4 54 22 72 19 74 0.85 SLOG cluster4 family DNA_processg_A PF02481.15 210 CP023447_00023 - 75 0.00045 19.5 0.0 1 1 7.6e-08 0.00046 19.5 0.0 59 95 38 74 14 75 0.81 DNA recombination-mediator protein A SKI PF01202.22 158 CP023447_00023 - 75 0.029 14.5 0.0 1 1 5.1e-06 0.031 14.4 0.0 43 83 31 72 17 75 0.85 Shikimate kinase Peptidase_C39 PF03412.15 133 CP023447_00028 - 198 2e-16 60.0 0.0 1 1 5.7e-20 2.6e-16 59.7 0.0 3 131 34 174 32 176 0.84 Peptidase C39 family Peptidase_C70 PF12385.8 145 CP023447_00028 - 198 0.00052 20.0 0.0 1 1 1.6e-07 0.00072 19.6 0.0 11 131 37 147 21 159 0.79 Papain-like cysteine protease AvrRpt2 AHJR-like PF18743.1 123 CP023447_00028 - 198 0.068 12.7 0.0 1 1 3.6e-05 0.16 11.5 0.0 11 42 153 184 145 188 0.89 REase_AHJR-like DUF3335 PF11814.8 206 CP023447_00028 - 198 0.1 12.1 0.0 1 2 0.0016 7.3 6.0 0.0 4 27 36 59 34 70 0.81 Peptidase_C39 like family DUF3335 PF11814.8 206 CP023447_00028 - 198 0.1 12.1 0.0 2 2 0.0062 28 4.1 0.0 144 167 122 145 90 158 0.86 Peptidase_C39 like family FliMN_C PF01052.20 73 CP023447_00029 - 280 4.6e-21 74.6 1.5 1 1 4e-25 7.2e-21 74.0 1.5 2 71 200 269 199 271 0.98 Type III flagellar switch regulator (C-ring) FliN C-term FliM PF02154.15 192 CP023447_00030 - 359 4.8e-75 251.7 1.4 1 1 2.3e-78 6.9e-75 251.2 1.4 1 192 41 231 41 231 0.99 Flagellar motor switch protein FliM FliMN_C PF01052.20 73 CP023447_00030 - 359 8e-14 51.4 0.3 1 1 4.5e-17 1.3e-13 50.7 0.3 3 72 255 324 253 325 0.96 Type III flagellar switch regulator (C-ring) FliN C-term DUF3567 PF12091.8 89 CP023447_00030 - 359 0.029 14.5 1.3 1 2 0.42 1.3e+03 -0.4 0.1 67 86 6 25 2 27 0.82 Protein of unknown function (DUF3567) DUF3567 PF12091.8 89 CP023447_00030 - 359 0.029 14.5 1.3 2 2 5e-05 0.15 12.2 0.2 41 80 301 340 291 348 0.91 Protein of unknown function (DUF3567) 7TM_GPCR_Sri PF10327.9 303 CP023447_00030 - 359 0.045 12.9 0.1 1 1 2.3e-05 0.068 12.3 0.1 157 224 165 232 156 249 0.91 Serpentine type 7TM GPCR chemoreceptor Sri Pertactin PF03212.14 121 CP023447_00030 - 359 0.085 12.8 0.0 1 2 0.015 46 4.0 0.0 16 50 100 140 87 151 0.72 Pertactin Pertactin PF03212.14 121 CP023447_00030 - 359 0.085 12.8 0.0 2 2 0.0027 7.9 6.4 0.0 29 68 263 302 231 307 0.86 Pertactin Sld5 PF05916.11 109 CP023447_00030 - 359 0.14 12.6 4.6 1 2 0.052 1.6e+02 2.8 0.7 40 84 20 89 1 93 0.62 GINS complex protein Sld5 PF05916.11 109 CP023447_00030 - 359 0.14 12.6 4.6 2 2 0.0002 0.6 10.6 0.2 35 81 298 345 271 348 0.84 GINS complex protein Sigma70_r4 PF04545.16 50 CP023447_00031 - 238 2.9e-18 65.1 2.8 1 1 8.7e-21 8.2e-18 63.7 2.8 1 50 186 235 186 235 0.98 Sigma-70, region 4 Sigma70_r2 PF04542.14 71 CP023447_00031 - 238 1.7e-10 40.5 0.0 1 1 3e-13 2.9e-10 39.8 0.0 1 67 28 97 28 100 0.97 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 54 CP023447_00031 - 238 1.6e-08 34.1 2.3 1 2 6.4 6e+03 -3.0 0.2 8 22 30 44 27 47 0.75 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 54 CP023447_00031 - 238 1.6e-08 34.1 2.3 2 2 1.7e-11 1.6e-08 34.1 2.3 2 54 181 233 180 233 0.92 Sigma-70, region 4 Sigma70_r3 PF04539.16 78 CP023447_00031 - 238 0.00075 19.6 5.5 1 3 3 2.9e+03 -1.5 0.1 29 51 9 31 8 33 0.78 Sigma-70 region 3 Sigma70_r3 PF04539.16 78 CP023447_00031 - 238 0.00075 19.6 5.5 2 3 2e-06 0.0019 18.3 0.2 5 61 111 167 108 181 0.79 Sigma-70 region 3 Sigma70_r3 PF04539.16 78 CP023447_00031 - 238 0.00075 19.6 5.5 3 3 0.16 1.5e+02 2.5 0.1 24 40 209 225 205 229 0.69 Sigma-70 region 3 HTH_23 PF13384.6 50 CP023447_00031 - 238 0.0017 18.1 0.1 1 1 4e-06 0.0037 17.0 0.1 9 41 196 229 189 235 0.82 Homeodomain-like domain UPF0122 PF04297.14 101 CP023447_00031 - 238 0.0018 18.5 4.1 1 2 3.4 3.2e+03 -1.6 0.0 55 84 85 112 84 126 0.62 Putative helix-turn-helix protein, YlxM / p13 like UPF0122 PF04297.14 101 CP023447_00031 - 238 0.0018 18.5 4.1 2 2 1.9e-06 0.0018 18.5 4.1 18 61 190 233 171 237 0.76 Putative helix-turn-helix protein, YlxM / p13 like MarR_2 PF12802.7 62 CP023447_00031 - 238 0.0027 17.5 0.0 1 1 6.1e-06 0.0058 16.5 0.0 10 47 196 231 183 232 0.83 MarR family HTH_37 PF13744.6 80 CP023447_00031 - 238 0.016 15.1 0.5 1 1 4.6e-05 0.043 13.8 0.5 19 58 196 232 169 237 0.80 Helix-turn-helix domain Sds3 PF08598.11 218 CP023447_00031 - 238 0.028 14.4 9.2 1 1 5.4e-05 0.051 13.6 9.2 26 98 163 238 159 238 0.90 Sds3-like HTH_5 PF01022.20 47 CP023447_00031 - 238 0.036 13.9 0.2 1 1 9.8e-05 0.093 12.6 0.2 14 34 204 224 195 235 0.84 Bacterial regulatory protein, arsR family MarR PF01047.22 59 CP023447_00031 - 238 0.04 13.9 2.5 1 2 2.2 2.1e+03 -1.2 0.1 37 51 170 184 169 188 0.79 MarR family MarR PF01047.22 59 CP023447_00031 - 238 0.04 13.9 2.5 2 2 4.5e-05 0.042 13.8 0.4 9 44 197 232 195 232 0.94 MarR family GerE PF00196.19 57 CP023447_00031 - 238 0.041 13.4 0.1 1 1 7.9e-05 0.075 12.6 0.1 15 46 203 234 188 236 0.82 Bacterial regulatory proteins, luxR family IF-2B PF01008.17 282 CP023447_00031 - 238 0.095 11.9 4.0 1 1 0.0012 1.2 8.3 4.0 30 119 131 222 14 237 0.78 Initiation factor 2 subunit family TrmB PF01978.19 68 CP023447_00031 - 238 0.11 12.4 1.3 1 1 0.00028 0.26 11.2 0.4 17 49 200 232 189 232 0.90 Sugar-specific transcriptional regulator TrmB Sigma70_ECF PF07638.11 185 CP023447_00031 - 238 0.14 12.0 5.8 1 1 0.0021 2 8.3 5.8 71 169 75 223 13 237 0.59 ECF sigma factor HTH_WhiA PF02650.14 84 CP023447_00031 - 238 0.15 12.4 8.4 1 2 3.7 3.5e+03 -1.6 0.1 20 36 106 122 101 153 0.61 WhiA C-terminal HTH domain HTH_WhiA PF02650.14 84 CP023447_00031 - 238 0.15 12.4 8.4 2 2 4.9e-05 0.046 14.1 4.7 20 82 171 231 161 233 0.84 WhiA C-terminal HTH domain DAPDH_C PF16654.5 154 CP023447_00031 - 238 0.15 11.9 1.7 1 2 1 9.7e+02 -0.5 0.1 89 109 104 125 96 135 0.78 Diaminopimelic acid dehydrogenase C-terminal domain DAPDH_C PF16654.5 154 CP023447_00031 - 238 0.15 11.9 1.7 2 2 0.00035 0.33 10.8 0.3 41 126 142 229 136 232 0.78 Diaminopimelic acid dehydrogenase C-terminal domain Glyco_hydro_65m PF03632.15 387 CP023447_00031 - 238 0.21 10.4 1.8 1 2 0.00039 0.37 9.6 0.0 250 301 78 128 50 138 0.78 Glycosyl hydrolase family 65 central catalytic domain Glyco_hydro_65m PF03632.15 387 CP023447_00031 - 238 0.21 10.4 1.8 2 2 0.37 3.5e+02 -0.2 0.5 191 257 148 214 129 235 0.70 Glycosyl hydrolase family 65 central catalytic domain Clr5 PF14420.6 54 CP023447_00031 - 238 2.5 8.4 5.8 1 3 7.5 7.1e+03 -2.7 0.0 20 32 106 118 103 127 0.68 Clr5 domain Clr5 PF14420.6 54 CP023447_00031 - 238 2.5 8.4 5.8 2 3 0.58 5.5e+02 0.9 0.2 14 27 163 175 159 186 0.84 Clr5 domain Clr5 PF14420.6 54 CP023447_00031 - 238 2.5 8.4 5.8 3 3 0.0015 1.4 9.2 0.5 6 31 191 216 187 228 0.87 Clr5 domain Hema_stalk PF08720.10 175 CP023447_00032 - 118 0.002 17.8 0.1 1 1 4.4e-07 0.0026 17.5 0.1 8 69 38 98 29 112 0.88 Influenza C hemagglutinin stalk DUF5531 PF17671.1 152 CP023447_00032 - 118 0.04 13.8 2.6 1 1 9.3e-06 0.056 13.3 2.1 101 136 81 116 76 118 0.91 Family of unknown function (DUF5531) Neur_chan_memb PF02932.16 238 CP023447_00032 - 118 0.11 12.5 0.1 1 1 2.4e-05 0.14 12.2 0.1 63 121 42 100 25 117 0.79 Neurotransmitter-gated ion-channel transmembrane region ParA PF10609.9 246 CP023447_00033 - 288 3.1e-26 92.3 1.4 1 1 1.3e-28 1.2e-25 90.4 1.4 3 245 23 260 21 261 0.84 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 177 CP023447_00033 - 288 2e-19 70.2 0.5 1 1 3.9e-22 3.7e-19 69.3 0.5 2 171 24 186 23 194 0.85 AAA domain CbiA PF01656.23 128 CP023447_00033 - 288 2.8e-18 66.2 0.0 1 1 6.3e-21 5.9e-18 65.1 0.0 1 124 26 238 26 242 0.91 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 271 CP023447_00033 - 288 7.6e-12 45.2 1.2 1 2 2e-09 1.9e-06 27.5 0.0 6 70 30 94 24 97 0.92 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_NifH PF00142.18 271 CP023447_00033 - 288 7.6e-12 45.2 1.2 2 2 4e-06 0.0038 16.7 0.2 106 264 123 280 118 286 0.79 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 262 CP023447_00033 - 288 4.9e-07 29.3 0.0 1 1 9.3e-10 8.8e-07 28.5 0.0 1 126 24 159 24 199 0.72 ATPase MipZ CBP_BcsQ PF06564.12 234 CP023447_00033 - 288 6e-07 29.2 0.0 1 1 9.1e-10 8.6e-07 28.7 0.0 3 151 25 168 23 206 0.80 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 305 CP023447_00033 - 288 2.7e-06 26.8 3.4 1 2 6.8e-09 6.4e-06 25.6 0.3 5 38 28 61 23 119 0.84 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 CP023447_00033 - 288 2.7e-06 26.8 3.4 2 2 0.14 1.3e+02 1.5 0.2 28 65 154 189 149 234 0.68 Anion-transporting ATPase MeaB PF03308.16 267 CP023447_00033 - 288 3.6e-05 22.9 0.3 1 2 2e-06 0.0019 17.2 0.0 14 66 7 61 1 66 0.81 Methylmalonyl Co-A mutase-associated GTPase MeaB MeaB PF03308.16 267 CP023447_00033 - 288 3.6e-05 22.9 0.3 2 2 0.024 22 3.9 0.1 123 153 134 165 124 199 0.87 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 188 CP023447_00033 - 288 3.9e-05 23.5 0.2 1 1 1.3e-07 0.00012 21.9 0.2 1 35 31 65 31 69 0.91 mRNA cleavage and polyadenylation factor CLP1 P-loop VirC1 PF07015.11 231 CP023447_00033 - 288 0.0003 20.1 0.1 1 1 7.4e-07 0.0007 19.0 0.1 3 39 25 61 23 65 0.95 VirC1 protein AAA_24 PF13479.6 197 CP023447_00033 - 288 0.00049 19.9 0.2 1 2 1.2e-06 0.0011 18.7 0.1 9 73 31 140 26 159 0.93 AAA domain AAA_24 PF13479.6 197 CP023447_00033 - 288 0.00049 19.9 0.2 2 2 2.7 2.5e+03 -2.0 0.0 161 161 187 187 146 249 0.60 AAA domain AAA_26 PF13500.6 198 CP023447_00033 - 288 0.00067 19.5 0.7 1 2 0.00053 0.5 10.1 0.0 3 35 26 58 24 59 0.92 AAA domain AAA_26 PF13500.6 198 CP023447_00033 - 288 0.00067 19.5 0.7 2 2 0.0026 2.4 7.9 0.1 130 192 157 230 112 235 0.71 AAA domain NB-ARC PF00931.22 252 CP023447_00033 - 288 0.0024 17.1 0.4 1 2 0.00014 0.13 11.4 0.1 16 42 21 46 4 61 0.75 NB-ARC domain NB-ARC PF00931.22 252 CP023447_00033 - 288 0.0024 17.1 0.4 2 2 0.028 27 3.8 0.0 151 221 173 240 162 266 0.69 NB-ARC domain NTPase_1 PF03266.15 168 CP023447_00033 - 288 0.0048 16.8 0.2 1 2 2.8e-05 0.027 14.4 0.0 5 31 30 56 25 61 0.88 NTPase NTPase_1 PF03266.15 168 CP023447_00033 - 288 0.0048 16.8 0.2 2 2 1.1 1e+03 -0.5 0.0 120 159 150 196 142 214 0.57 NTPase SRP54 PF00448.22 196 CP023447_00033 - 288 0.0073 16.0 1.4 1 2 1.6e-05 0.015 14.9 0.1 5 39 28 62 24 65 0.90 SRP54-type protein, GTPase domain SRP54 PF00448.22 196 CP023447_00033 - 288 0.0073 16.0 1.4 2 2 0.79 7.4e+02 -0.4 0.1 82 93 131 143 113 210 0.68 SRP54-type protein, GTPase domain Helicase_RecD PF05127.14 177 CP023447_00033 - 288 0.06 13.2 0.8 1 2 0.033 31 4.4 0.0 69 118 114 159 27 165 0.55 Helicase Helicase_RecD PF05127.14 177 CP023447_00033 - 288 0.06 13.2 0.8 2 2 0.0064 6.1 6.7 0.3 21 98 168 245 160 264 0.75 Helicase AAA_18 PF13238.6 130 CP023447_00033 - 288 0.062 13.8 0.4 1 1 0.00019 0.18 12.4 0.4 4 25 30 80 26 169 0.63 AAA domain APS_kinase PF01583.20 158 CP023447_00033 - 288 0.083 12.8 0.1 1 1 0.00015 0.14 12.0 0.1 6 39 28 61 23 75 0.88 Adenylylsulphate kinase AAA_30 PF13604.6 192 CP023447_00033 - 288 0.12 12.0 0.1 1 1 0.00023 0.22 11.2 0.1 17 50 23 56 14 65 0.89 AAA domain SRP54 PF00448.22 196 CP023447_00034 - 480 1.1e-42 145.9 0.1 1 1 3.5e-45 1.8e-42 145.2 0.1 2 195 279 470 278 471 0.91 SRP54-type protein, GTPase domain AAA_22 PF13401.6 137 CP023447_00034 - 480 0.00053 20.3 0.0 1 1 2.9e-06 0.0015 18.8 0.0 3 28 276 301 272 333 0.88 AAA domain MMR_HSR1 PF01926.23 114 CP023447_00034 - 480 0.00098 19.2 0.1 1 1 6.9e-06 0.0037 17.3 0.1 3 92 282 403 280 423 0.62 50S ribosome-binding GTPase ResIII PF04851.15 171 CP023447_00034 - 480 0.0015 18.6 0.0 1 3 9.4 5e+03 -2.7 0.0 101 101 44 44 7 106 0.51 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP023447_00034 - 480 0.0015 18.6 0.0 2 3 0.71 3.8e+02 1.0 1.6 61 94 115 155 101 195 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP023447_00034 - 480 0.0015 18.6 0.0 3 3 2.8e-06 0.0015 18.6 0.0 21 49 261 303 228 317 0.75 Type III restriction enzyme, res subunit AAA_24 PF13479.6 197 CP023447_00034 - 480 0.0015 18.3 0.8 1 2 5.8 3e+03 -2.3 0.0 123 123 162 162 118 209 0.57 AAA domain AAA_24 PF13479.6 197 CP023447_00034 - 480 0.0015 18.3 0.8 2 2 8.4e-06 0.0044 16.8 0.2 3 76 279 367 277 380 0.68 AAA domain AAA_25 PF13481.6 194 CP023447_00034 - 480 0.0021 17.7 0.1 1 2 1.5e-05 0.0079 15.8 0.0 28 61 273 306 267 316 0.87 AAA domain AAA_25 PF13481.6 194 CP023447_00034 - 480 0.0021 17.7 0.1 2 2 4.1 2.2e+03 -2.0 0.0 132 151 346 365 326 368 0.81 AAA domain ABC_tran PF00005.27 137 CP023447_00034 - 480 0.0022 18.5 0.0 1 1 4.2e-06 0.0022 18.5 0.0 4 46 271 318 269 414 0.85 ABC transporter cobW PF02492.19 177 CP023447_00034 - 480 0.0028 17.3 1.4 1 1 6.6e-05 0.035 13.7 1.4 2 152 280 426 279 432 0.70 CobW/HypB/UreG, nucleotide-binding domain Rad17 PF03215.15 186 CP023447_00034 - 480 0.0031 17.5 0.9 1 2 4.3e-05 0.023 14.6 0.0 43 71 276 304 254 319 0.82 Rad17 P-loop domain Rad17 PF03215.15 186 CP023447_00034 - 480 0.0031 17.5 0.9 2 2 1.4 7.4e+02 -0.1 0.1 96 119 364 387 324 449 0.66 Rad17 P-loop domain AAA_7 PF12775.7 181 CP023447_00034 - 480 0.0031 17.0 0.0 1 1 1.5e-05 0.0079 15.7 0.0 30 54 275 299 269 325 0.75 P-loop containing dynein motor region CbiA PF01656.23 128 CP023447_00034 - 480 0.007 16.4 3.3 1 2 2.5 1.3e+03 -0.6 0.1 87 117 171 203 76 213 0.62 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 CP023447_00034 - 480 0.007 16.4 3.3 2 2 0.00013 0.07 13.2 0.9 5 101 284 441 280 464 0.54 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.6 136 CP023447_00034 - 480 0.0072 16.8 0.9 1 2 3.6 1.9e+03 -0.8 0.2 31 52 220 242 174 257 0.60 AAA domain AAA_17 PF13207.6 136 CP023447_00034 - 480 0.0072 16.8 0.9 2 2 6.1e-05 0.032 14.6 0.0 1 115 284 404 284 409 0.68 AAA domain IstB_IS21 PF01695.17 178 CP023447_00034 - 480 0.011 15.5 0.9 1 1 0.00025 0.13 11.9 0.3 42 126 273 374 236 411 0.64 IstB-like ATP binding protein T2SSE PF00437.20 273 CP023447_00034 - 480 0.011 14.8 0.0 1 1 3.7e-05 0.02 14.0 0.0 123 148 272 297 233 315 0.82 Type II/IV secretion system protein AAA_5 PF07728.14 138 CP023447_00034 - 480 0.011 15.7 0.3 1 1 0.00011 0.058 13.4 0.3 2 34 281 316 280 412 0.75 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 167 CP023447_00034 - 480 0.012 15.5 0.7 1 2 7.3e-05 0.038 13.9 0.1 93 120 271 299 231 320 0.85 RsgA GTPase RsgA_GTPase PF03193.16 167 CP023447_00034 - 480 0.012 15.5 0.7 2 2 7 3.7e+03 -2.3 0.0 12 26 385 399 355 423 0.57 RsgA GTPase AAA_16 PF13191.6 170 CP023447_00034 - 480 0.021 15.2 0.0 1 1 0.00011 0.056 13.8 0.0 24 48 276 303 260 379 0.77 AAA ATPase domain NB-ARC PF00931.22 252 CP023447_00034 - 480 0.021 14.0 0.0 1 1 9.9e-05 0.052 12.7 0.0 18 58 276 335 263 436 0.63 NB-ARC domain AAA_23 PF13476.6 200 CP023447_00034 - 480 0.026 15.0 13.2 1 2 0.014 7.6 7.0 7.5 89 175 92 198 11 240 0.60 AAA domain AAA_23 PF13476.6 200 CP023447_00034 - 480 0.026 15.0 13.2 2 2 0.00079 0.42 11.1 0.3 19 41 278 300 263 415 0.85 AAA domain ParA PF10609.9 246 CP023447_00034 - 480 0.038 13.4 0.1 1 2 3 1.6e+03 -1.7 0.0 152 190 221 260 210 264 0.69 NUBPL iron-transfer P-loop NTPase ParA PF10609.9 246 CP023447_00034 - 480 0.038 13.4 0.1 2 2 0.0003 0.16 11.4 0.0 3 43 277 319 275 355 0.85 NUBPL iron-transfer P-loop NTPase PhoH PF02562.16 205 CP023447_00034 - 480 0.045 13.2 0.0 1 1 0.00018 0.097 12.1 0.0 15 60 274 320 269 368 0.74 PhoH-like protein Roc PF08477.13 120 CP023447_00034 - 480 0.045 14.0 0.6 1 2 0.55 2.9e+02 1.7 0.1 17 46 126 155 121 166 0.78 Ras of Complex, Roc, domain of DAPkinase Roc PF08477.13 120 CP023447_00034 - 480 0.045 14.0 0.6 2 2 0.002 1 9.6 0.0 2 27 281 306 279 341 0.66 Ras of Complex, Roc, domain of DAPkinase AAA_14 PF13173.6 131 CP023447_00034 - 480 0.047 13.7 0.2 1 2 2.2 1.2e+03 -0.5 0.7 22 75 87 148 81 194 0.50 AAA domain AAA_14 PF13173.6 131 CP023447_00034 - 480 0.047 13.7 0.2 2 2 9e-05 0.047 13.7 0.2 2 47 278 325 277 398 0.68 AAA domain VirE PF05272.11 198 CP023447_00034 - 480 0.049 13.4 0.1 1 2 0.00042 0.22 11.2 0.0 46 79 272 306 231 320 0.78 Virulence-associated protein E VirE PF05272.11 198 CP023447_00034 - 480 0.049 13.4 0.1 2 2 4.3 2.2e+03 -1.9 0.0 140 181 358 399 341 409 0.70 Virulence-associated protein E NACHT PF05729.12 166 CP023447_00034 - 480 0.056 13.4 0.1 1 1 0.00024 0.13 12.2 0.1 2 28 280 306 279 313 0.87 NACHT domain AAA PF00004.29 132 CP023447_00034 - 480 0.061 13.8 0.5 1 1 0.0003 0.16 12.4 0.5 1 22 281 302 281 384 0.70 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 192 CP023447_00034 - 480 0.062 13.0 0.1 1 1 0.0002 0.11 12.2 0.1 17 39 277 299 271 318 0.81 AAA domain AAA_19 PF13245.6 146 CP023447_00034 - 480 0.08 13.3 0.2 1 1 0.00043 0.23 11.8 0.2 9 68 277 337 271 402 0.66 AAA domain AAA_18 PF13238.6 130 CP023447_00034 - 480 0.097 13.2 0.1 1 1 0.00072 0.38 11.3 0.1 2 84 282 367 281 395 0.60 AAA domain DEAD PF00270.29 176 CP023447_00034 - 480 0.12 12.1 1.4 1 2 3.9 2.1e+03 -1.7 0.0 59 105 120 164 114 194 0.71 DEAD/DEAH box helicase DEAD PF00270.29 176 CP023447_00034 - 480 0.12 12.1 1.4 2 2 0.00053 0.28 10.9 0.3 11 106 275 366 267 428 0.76 DEAD/DEAH box helicase FtsK_SpoIIIE PF01580.18 243 CP023447_00034 - 480 0.14 11.5 0.1 1 2 0.38 2e+02 1.2 0.0 130 161 177 208 173 233 0.74 FtsK/SpoIIIE family FtsK_SpoIIIE PF01580.18 243 CP023447_00034 - 480 0.14 11.5 0.1 2 2 0.0033 1.7 7.9 0.0 30 65 270 304 241 358 0.75 FtsK/SpoIIIE family AAA_33 PF13671.6 143 CP023447_00034 - 480 0.17 12.0 0.0 1 1 0.00077 0.41 10.8 0.0 2 20 281 299 280 365 0.85 AAA domain DUF3391 PF11871.8 136 CP023447_00034 - 480 0.25 11.9 1.7 1 1 0.0011 0.55 10.8 1.7 41 100 39 98 26 192 0.83 Domain of unknown function (DUF3391) NTPase_1 PF03266.15 168 CP023447_00034 - 480 0.52 10.2 3.4 1 2 0.0076 4 7.3 0.5 3 20 282 299 280 323 0.80 NTPase NTPase_1 PF03266.15 168 CP023447_00034 - 480 0.52 10.2 3.4 2 2 0.15 78 3.1 0.1 89 127 351 388 333 433 0.69 NTPase HPPK PF01288.20 112 CP023447_00035 - 157 2e-20 73.4 0.0 1 1 1.3e-24 2.3e-20 73.2 0.0 2 108 32 155 31 157 0.91 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DHquinase_II PF01220.19 138 CP023447_00036 - 159 1e-57 193.7 0.3 1 1 2e-61 1.2e-57 193.4 0.3 1 135 2 136 2 139 0.98 Dehydroquinase class II Enoyl_reductase PF12241.8 236 CP023447_00036 - 159 0.016 14.5 0.0 1 1 3.7e-06 0.022 14.1 0.0 6 65 20 81 16 114 0.78 Trans-2-enoyl-CoA reductase catalytic region PCuAC PF04314.13 109 CP023447_00036 - 159 0.035 13.9 0.1 1 2 0.0064 38 4.1 0.2 50 70 21 41 2 47 0.77 Copper chaperone PCu(A)C PCuAC PF04314.13 109 CP023447_00036 - 159 0.035 13.9 0.1 2 2 0.00042 2.5 7.9 0.0 40 86 93 139 71 153 0.76 Copper chaperone PCu(A)C Amidohydro_1 PF01979.20 344 CP023447_00037 - 409 5.3e-61 206.8 0.0 1 1 6.9e-65 6.2e-61 206.6 0.0 1 343 56 406 56 407 0.94 Amidohydrolase family Amidohydro_3 PF07969.11 473 CP023447_00037 - 409 1.3e-07 31.5 0.0 1 3 0.0011 10 5.5 0.1 7 21 54 68 53 81 0.83 Amidohydrolase family Amidohydro_3 PF07969.11 473 CP023447_00037 - 409 1.3e-07 31.5 0.0 2 3 0.00036 3.2 7.1 0.0 154 216 97 169 85 203 0.79 Amidohydrolase family Amidohydro_3 PF07969.11 473 CP023447_00037 - 409 1.3e-07 31.5 0.0 3 3 1.8e-06 0.016 14.7 0.0 411 447 344 379 291 391 0.69 Amidohydrolase family Peptidase_S49 PF01343.18 154 CP023447_00038 - 298 6.8e-53 178.8 0.2 1 1 2.4e-56 8.7e-53 178.4 0.2 2 153 102 253 101 254 0.99 Peptidase family S49 CLP_protease PF00574.23 182 CP023447_00038 - 298 5.5e-06 26.4 0.3 1 1 2e-08 7e-05 22.8 0.3 10 99 42 130 38 241 0.82 Clp protease SDH_sah PF01972.16 286 CP023447_00038 - 298 0.00055 19.0 0.3 1 1 2.5e-07 0.0009 18.3 0.1 75 156 57 143 51 235 0.80 Serine dehydrogenase proteinase Ligase_CoA PF00549.19 153 CP023447_00038 - 298 0.15 11.9 0.0 1 1 7.9e-05 0.28 11.0 0.0 56 122 58 120 40 139 0.85 CoA-ligase CsgA PF17334.2 83 CP023447_00038 - 298 0.21 12.3 1.1 1 2 0.00086 3.1 8.6 0.0 28 76 164 212 155 214 0.87 Minor curli fiber component A CsgA PF17334.2 83 CP023447_00038 - 298 0.21 12.3 1.1 2 2 0.18 6.3e+02 1.2 0.3 11 50 236 277 232 293 0.60 Minor curli fiber component A GSH-S_ATP PF02955.16 175 CP023447_00039 - 343 0.056 12.8 0.0 1 2 0.11 1e+03 -1.0 0.0 31 52 140 161 121 170 0.80 Prokaryotic glutathione synthetase, ATP-grasp domain GSH-S_ATP PF02955.16 175 CP023447_00039 - 343 0.056 12.8 0.0 2 2 2.6e-05 0.24 10.8 0.0 62 107 199 243 185 262 0.78 Prokaryotic glutathione synthetase, ATP-grasp domain DUF4821 PF16092.5 263 CP023447_00039 - 343 0.084 12.5 0.0 1 1 1.5e-05 0.13 11.9 0.0 179 238 256 322 248 329 0.83 Domain of unknown function (DUF4821) Zn_ribbon_SprT PF17283.2 38 CP023447_00040 - 116 0.0036 17.2 1.1 1 1 3.6e-07 0.0064 16.4 1.1 2 36 68 108 67 109 0.93 SprT-like zinc ribbon domain Hemerythrin PF01814.23 131 CP023447_00041 - 98 4.9e-06 27.2 1.4 1 1 1.1e-09 6.3e-06 26.8 1.4 4 64 19 79 16 87 0.86 Hemerythrin HHE cation binding domain LANC_like PF05147.13 352 CP023447_00041 - 98 0.022 13.3 0.1 1 1 4.7e-06 0.028 13.0 0.1 177 214 38 74 35 85 0.83 Lanthionine synthetase C-like protein RHH_7 PF16777.5 74 CP023447_00041 - 98 0.046 14.1 0.1 1 1 1.4e-05 0.085 13.3 0.1 40 70 22 52 9 55 0.90 Transcriptional regulator, RHH-like, CopG LUD_dom PF02589.15 189 CP023447_00042 - 218 1.3e-29 103.3 0.2 1 1 2.9e-33 1.7e-29 102.9 0.2 2 188 48 217 47 218 0.94 LUD domain AAA_5 PF07728.14 138 CP023447_00042 - 218 0.068 13.2 0.1 1 1 3.1e-05 0.19 11.7 0.1 31 109 63 145 6 176 0.67 AAA domain (dynein-related subfamily) FtsX_ECD PF18075.1 96 CP023447_00042 - 218 0.26 11.9 3.8 1 3 0.009 54 4.5 0.1 27 53 2 28 1 39 0.80 FtsX extracellular domain FtsX_ECD PF18075.1 96 CP023447_00042 - 218 0.26 11.9 3.8 2 3 0.00035 2.1 9.0 0.5 22 69 30 72 24 79 0.80 FtsX extracellular domain FtsX_ECD PF18075.1 96 CP023447_00042 - 218 0.26 11.9 3.8 3 3 2.3 1.4e+04 -3.2 0.0 52 63 169 180 160 187 0.49 FtsX extracellular domain LUD_dom PF02589.15 189 CP023447_00043 - 479 7.8e-52 175.8 0.2 1 2 9.6 9.1e+03 -3.8 0.1 52 83 25 54 15 57 0.57 LUD domain LUD_dom PF02589.15 189 CP023447_00043 - 479 7.8e-52 175.8 0.2 2 2 1.3e-54 1.3e-51 175.1 0.0 3 188 70 292 68 293 0.99 LUD domain DUF3390 PF11870.8 88 CP023447_00043 - 479 9.3e-17 61.2 0.0 1 1 2.1e-19 1.9e-16 60.2 0.0 1 87 384 475 384 476 0.97 Domain of unknown function (DUF3390) Fer4_8 PF13183.6 65 CP023447_00043 - 479 1.1e-11 44.9 1.5 1 1 3.3e-14 3.1e-11 43.6 1.5 2 65 309 376 308 376 0.80 4Fe-4S dicluster domain Fer4_17 PF13534.6 61 CP023447_00043 - 479 4.6e-09 36.7 2.0 1 1 1.2e-11 1.1e-08 35.5 2.0 1 60 311 376 311 377 0.81 4Fe-4S dicluster domain Fer4_10 PF13237.6 56 CP023447_00043 - 479 1e-08 35.1 8.1 1 2 4.7e-11 4.4e-08 33.1 7.6 4 56 307 373 304 373 0.96 4Fe-4S dicluster domain Fer4_10 PF13237.6 56 CP023447_00043 - 479 1e-08 35.1 8.1 2 2 2.4e-05 0.022 14.9 2.1 7 24 360 382 354 408 0.74 4Fe-4S dicluster domain Fer4 PF00037.27 24 CP023447_00043 - 479 1.8e-08 33.9 11.7 1 2 2.8e-07 0.00027 20.6 2.3 7 20 311 324 306 325 0.90 4Fe-4S binding domain Fer4 PF00037.27 24 CP023447_00043 - 479 1.8e-08 33.9 11.7 2 2 2.2e-06 0.0021 17.8 2.2 7 21 361 375 358 377 0.88 4Fe-4S binding domain Fer4_7 PF12838.7 52 CP023447_00043 - 479 5.7e-08 33.2 4.6 1 1 1.5e-10 1.4e-07 32.0 4.6 1 52 311 376 311 376 0.69 4Fe-4S dicluster domain Fer4_2 PF12797.7 22 CP023447_00043 - 479 1e-06 28.5 11.3 1 2 3e-07 0.00029 20.8 1.8 4 21 306 323 302 324 0.89 4Fe-4S binding domain Fer4_2 PF12797.7 22 CP023447_00043 - 479 1e-06 28.5 11.3 2 2 0.00016 0.15 12.2 2.3 8 21 360 373 357 374 0.89 4Fe-4S binding domain Fer4_9 PF13187.6 51 CP023447_00043 - 479 4.8e-06 26.6 5.7 1 2 4.8e-05 0.045 13.9 1.8 34 48 310 324 291 328 0.71 4Fe-4S dicluster domain Fer4_9 PF13187.6 51 CP023447_00043 - 479 4.8e-06 26.6 5.7 2 2 6.3e-08 6e-05 23.1 6.7 1 49 311 375 311 377 0.87 4Fe-4S dicluster domain Fer4_6 PF12837.7 24 CP023447_00043 - 479 1.8e-05 24.6 11.2 1 2 5e-05 0.048 13.8 2.1 8 21 311 324 307 329 0.89 4Fe-4S binding domain Fer4_6 PF12837.7 24 CP023447_00043 - 479 1.8e-05 24.6 11.2 2 2 1.9e-05 0.018 15.1 1.9 9 23 362 376 359 377 0.91 4Fe-4S binding domain Fer4_21 PF14697.6 59 CP023447_00043 - 479 4.7e-05 23.4 4.6 1 2 5.4e-05 0.051 13.7 0.1 39 57 310 328 287 335 0.76 4Fe-4S dicluster domain Fer4_21 PF14697.6 59 CP023447_00043 - 479 4.7e-05 23.4 4.6 2 2 0.00051 0.48 10.6 1.0 40 54 361 375 347 379 0.88 4Fe-4S dicluster domain Fer4_20 PF14691.6 113 CP023447_00043 - 479 0.00016 21.4 2.9 1 2 6.3e-05 0.06 13.1 0.1 10 44 298 330 290 337 0.80 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_20 PF14691.6 113 CP023447_00043 - 479 0.00016 21.4 2.9 2 2 0.0026 2.4 7.9 0.5 24 55 362 391 359 405 0.85 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.7 17 CP023447_00043 - 479 0.00031 21.0 11.3 1 2 5.7e-07 0.00053 20.3 1.3 3 16 311 324 309 333 0.93 4Fe-4S binding domain Fer4_4 PF12800.7 17 CP023447_00043 - 479 0.00031 21.0 11.3 2 2 0.05 47 4.8 3.0 4 17 362 375 359 375 0.91 4Fe-4S binding domain Fer4_16 PF13484.6 67 CP023447_00043 - 479 0.0012 19.7 11.6 1 3 0.00075 0.71 10.9 2.4 1 14 311 324 271 325 0.71 4Fe-4S double cluster binding domain Fer4_16 PF13484.6 67 CP023447_00043 - 479 0.0012 19.7 11.6 2 3 5.3e-05 0.05 14.5 11.9 1 66 311 374 311 375 0.85 4Fe-4S double cluster binding domain Fer4_16 PF13484.6 67 CP023447_00043 - 479 0.0012 19.7 11.6 3 3 0.00069 0.65 11.0 3.2 1 16 361 376 361 393 0.87 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 96 CP023447_00043 - 479 0.0022 18.8 5.7 1 2 0.0012 1.2 10.1 0.2 69 94 299 324 292 326 0.74 4Fe-4S dicluster domain Fer4_22 PF17179.4 96 CP023447_00043 - 479 0.0022 18.8 5.7 2 2 0.0012 1.1 10.1 1.0 80 96 360 376 352 376 0.88 4Fe-4S dicluster domain Fer4_3 PF12798.7 15 CP023447_00043 - 479 0.0029 18.4 16.2 1 2 0.00025 0.23 12.5 3.8 1 13 312 324 312 326 0.94 4Fe-4S binding domain Fer4_3 PF12798.7 15 CP023447_00043 - 479 0.0029 18.4 16.2 2 2 0.00056 0.53 11.3 4.6 1 13 362 374 362 376 0.93 4Fe-4S binding domain Fer4_18 PF13746.6 114 CP023447_00043 - 479 0.026 14.7 5.7 1 2 0.0021 2 8.6 0.1 56 74 307 325 289 334 0.76 4Fe-4S dicluster domain Fer4_18 PF13746.6 114 CP023447_00043 - 479 0.026 14.7 5.7 2 2 0.0062 5.8 7.1 1.3 60 79 361 380 353 392 0.81 4Fe-4S dicluster domain Ribosomal_L5_C PF00673.21 94 CP023447_00043 - 479 0.043 14.0 0.0 1 1 0.0001 0.096 12.9 0.0 12 72 27 83 12 113 0.79 ribosomal L5P family C-terminus Fer4_13 PF13370.6 58 CP023447_00043 - 479 0.27 11.8 7.9 1 2 0.00044 0.42 11.2 0.7 5 17 311 323 308 340 0.85 4Fe-4S single cluster domain of Ferredoxin I Fer4_13 PF13370.6 58 CP023447_00043 - 479 0.27 11.8 7.9 2 2 0.13 1.3e+02 3.3 1.4 6 17 362 373 359 374 0.93 4Fe-4S single cluster domain of Ferredoxin I CCG PF02754.16 85 CP023447_00044 - 246 8.5e-31 106.0 0.4 1 2 1.1e-15 9.7e-12 44.9 0.0 1 84 5 85 5 86 0.94 Cysteine-rich domain CCG PF02754.16 85 CP023447_00044 - 246 8.5e-31 106.0 0.4 2 2 3.1e-20 2.7e-16 59.5 0.1 1 85 133 218 133 218 0.97 Cysteine-rich domain HTH_11 PF08279.12 55 CP023447_00044 - 246 0.029 14.3 0.1 1 2 0.0028 25 4.9 0.0 30 51 19 40 18 42 0.86 HTH domain HTH_11 PF08279.12 55 CP023447_00044 - 246 0.029 14.3 0.1 2 2 0.00081 7.3 6.6 0.0 26 48 185 209 182 225 0.83 HTH domain Lactate_perm PF02652.14 522 CP023447_00045 - 560 1.2e-205 684.2 48.6 1 1 8.1e-210 1.4e-205 683.9 48.6 1 521 19 545 19 546 0.98 L-lactate permease CDtoxinA PF03498.14 150 CP023447_00046 - 189 1.1e-49 167.9 0.0 1 1 1.4e-53 1.2e-49 167.7 0.0 1 150 29 187 29 187 0.99 Cytolethal distending toxin A/C domain DUF2141 PF09912.9 112 CP023447_00046 - 189 0.069 13.1 0.0 1 1 1e-05 0.092 12.7 0.0 39 79 85 125 30 131 0.84 Uncharacterized protein conserved in bacteria (DUF2141) Exo_endo_phos PF03372.23 233 CP023447_00047 - 265 3.4e-18 66.0 0.2 1 1 5.4e-22 4.9e-18 65.5 0.2 1 233 24 257 24 257 0.78 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 119 CP023447_00047 - 265 0.17 11.8 0.0 1 1 0.00047 4.2 7.2 0.0 27 118 174 260 149 261 0.56 Endonuclease-reverse transcriptase CDtoxinA PF03498.14 150 CP023447_00048 - 268 1e-45 155.0 0.1 1 1 2.4e-49 1.4e-45 154.5 0.1 2 150 116 260 115 260 0.98 Cytolethal distending toxin A/C domain RicinB_lectin_2 PF14200.6 89 CP023447_00048 - 268 1.4e-06 28.9 0.5 1 2 6.2e-10 3.7e-06 27.6 0.1 4 74 153 218 150 223 0.85 Ricin-type beta-trefoil lectin domain-like RicinB_lectin_2 PF14200.6 89 CP023447_00048 - 268 1.4e-06 28.9 0.5 2 2 1.1 6.4e+03 -2.0 0.0 46 55 243 252 236 255 0.69 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.22 127 CP023447_00048 - 268 1.6e-05 25.1 0.4 1 1 1.2e-08 6.9e-05 23.1 0.4 4 85 165 251 162 255 0.65 Ricin-type beta-trefoil lectin domain DUF4492 PF14899.6 63 CP023447_00049 - 89 1.7e-25 88.7 8.4 1 2 0.41 7.3e+03 -3.0 0.2 32 40 4 12 2 18 0.65 Domain of unknown function (DUF4492) DUF4492 PF14899.6 63 CP023447_00049 - 89 1.7e-25 88.7 8.4 2 2 9.4e-30 1.7e-25 88.7 8.4 2 63 24 85 23 85 0.98 Domain of unknown function (DUF4492) Cyt_bd_oxida_I PF01654.17 418 CP023447_00050 - 520 1.6e-171 570.5 23.0 1 1 2.4e-175 2.1e-171 570.2 23.0 1 417 9 504 9 505 0.98 Cytochrome bd terminal oxidase subunit I Oxidored_q5_N PF01059.17 110 CP023447_00050 - 520 1.9 8.6 15.0 1 4 0.001 9.3 6.4 0.8 19 67 52 99 29 108 0.79 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q5_N PF01059.17 110 CP023447_00050 - 520 1.9 8.6 15.0 2 4 0.0012 11 6.2 0.1 52 75 113 136 99 139 0.81 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q5_N PF01059.17 110 CP023447_00050 - 520 1.9 8.6 15.0 3 4 0.01 91 3.2 1.0 24 66 394 436 383 446 0.75 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q5_N PF01059.17 110 CP023447_00050 - 520 1.9 8.6 15.0 4 4 0.34 3.1e+03 -1.7 0.1 70 80 478 488 464 507 0.61 NADH-ubiquinone oxidoreductase chain 4, amino terminus Cyt_bd_oxida_II PF02322.15 303 CP023447_00051 - 374 4.4e-74 249.6 31.0 1 1 1.1e-77 5e-74 249.4 31.0 1 303 10 357 10 357 0.87 Cytochrome bd terminal oxidase subunit II TrbL PF04610.14 215 CP023447_00051 - 374 0.002 17.9 11.8 1 4 2.9 1.3e+04 -4.4 4.0 95 119 55 79 17 104 0.57 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP023447_00051 - 374 0.002 17.9 11.8 2 4 0.12 5.5e+02 0.1 0.1 85 116 107 144 100 151 0.65 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP023447_00051 - 374 0.002 17.9 11.8 3 4 0.64 2.9e+03 -2.2 2.3 134 153 215 234 207 246 0.83 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP023447_00051 - 374 0.002 17.9 11.8 4 4 4.4e-07 0.002 17.9 11.8 118 206 247 341 236 354 0.79 TrbL/VirB6 plasmid conjugal transfer protein DUF334 PF03904.13 230 CP023447_00051 - 374 0.055 13.0 0.9 1 1 3.7e-05 0.17 11.4 0.9 148 219 283 354 276 360 0.76 Domain of unknown function (DUF334) DUF5362 PF17319.2 94 CP023447_00051 - 374 0.68 9.8 6.3 1 2 0.00037 1.6 8.6 0.0 28 82 87 141 80 150 0.93 Family of unknown function (DUF5362) DUF5362 PF17319.2 94 CP023447_00051 - 374 0.68 9.8 6.3 2 2 0.69 3.1e+03 -1.9 5.0 46 46 278 278 254 356 0.49 Family of unknown function (DUF5362) Asp_Glu_race PF01177.22 224 CP023447_00053 - 231 2e-56 191.4 2.4 1 1 6.4e-60 2.3e-56 191.2 2.4 1 220 7 220 7 224 0.97 Asp/Glu/Hydantoin racemase Pantoate_transf PF02548.15 259 CP023447_00053 - 231 0.00035 20.0 0.4 1 2 9e-07 0.0032 16.9 0.1 145 205 46 107 35 145 0.80 Ketopantoate hydroxymethyltransferase Pantoate_transf PF02548.15 259 CP023447_00053 - 231 0.00035 20.0 0.4 2 2 0.057 2e+02 1.2 0.0 156 184 170 198 162 205 0.84 Ketopantoate hydroxymethyltransferase PA PF02225.22 89 CP023447_00053 - 231 0.022 14.7 0.0 1 2 0.0019 6.6 6.8 0.0 40 89 69 112 26 112 0.77 PA domain PA PF02225.22 89 CP023447_00053 - 231 0.022 14.7 0.0 2 2 0.0033 12 6.0 0.0 39 54 181 206 141 227 0.79 PA domain AAA_33 PF13671.6 143 CP023447_00053 - 231 0.083 13.1 0.1 1 1 3.9e-05 0.14 12.3 0.1 47 116 52 118 15 128 0.77 AAA domain HTH_CodY PF08222.11 61 CP023447_00053 - 231 0.16 11.6 3.3 1 4 0.00026 0.94 9.1 0.2 31 61 4 34 1 34 0.89 CodY helix-turn-helix domain HTH_CodY PF08222.11 61 CP023447_00053 - 231 0.16 11.6 3.3 2 4 3.4 1.2e+04 -4.1 0.0 26 32 69 75 64 76 0.79 CodY helix-turn-helix domain HTH_CodY PF08222.11 61 CP023447_00053 - 231 0.16 11.6 3.3 3 4 0.061 2.2e+02 1.5 0.0 46 58 153 165 150 168 0.87 CodY helix-turn-helix domain HTH_CodY PF08222.11 61 CP023447_00053 - 231 0.16 11.6 3.3 4 4 0.76 2.7e+03 -2.0 0.0 44 58 208 222 204 225 0.83 CodY helix-turn-helix domain UDG PF03167.19 155 CP023447_00054 - 231 1.1e-20 74.2 0.1 1 1 8.5e-25 1.5e-20 73.7 0.1 6 151 64 217 59 221 0.87 Uracil DNA glycosylase superfamily Lyase_1 PF00206.20 312 CP023447_00055 - 468 8.3e-102 340.8 0.0 1 1 1.7e-105 1e-101 340.5 0.0 2 312 12 342 11 342 0.98 Lyase FumaraseC_C PF10415.9 54 CP023447_00055 - 468 4.3e-24 84.7 0.1 1 1 2.3e-27 1.3e-23 83.1 0.1 1 53 408 460 408 461 0.98 Fumarase C C-terminus SH3_17 PF18350.1 53 CP023447_00055 - 468 0.088 12.7 0.0 1 1 4.7e-05 0.28 11.1 0.0 10 28 394 413 386 422 0.80 Restriction endonuclease SH3 domain DcuA_DcuB PF03605.14 368 CP023447_00056 - 445 3.1e-134 447.5 28.5 1 1 6.5e-138 3.9e-134 447.2 28.5 1 367 8 370 8 371 0.96 Anaerobic c4-dicarboxylate membrane transporter CitMHS PF03600.16 300 CP023447_00056 - 445 0.14 11.3 52.4 1 2 5.6e-06 0.034 13.4 30.7 22 236 35 251 3 318 0.59 Citrate transporter CitMHS PF03600.16 300 CP023447_00056 - 445 0.14 11.3 52.4 2 2 0.013 80 2.3 14.7 67 168 330 439 307 445 0.75 Citrate transporter Tmemb_18A PF09771.9 118 CP023447_00056 - 445 7 7.1 5.9 1 4 0.0018 11 6.5 0.0 17 66 41 90 37 124 0.69 Transmembrane protein 188 Tmemb_18A PF09771.9 118 CP023447_00056 - 445 7 7.1 5.9 2 4 0.55 3.3e+03 -1.5 0.1 56 56 267 267 230 323 0.59 Transmembrane protein 188 Tmemb_18A PF09771.9 118 CP023447_00056 - 445 7 7.1 5.9 3 4 0.27 1.6e+03 -0.5 0.1 37 80 302 368 293 389 0.50 Transmembrane protein 188 Tmemb_18A PF09771.9 118 CP023447_00056 - 445 7 7.1 5.9 4 4 0.091 5.5e+02 1.0 0.1 50 81 407 438 378 444 0.74 Transmembrane protein 188 TPR_2 PF07719.17 34 CP023447_00057 - 453 0.0002 21.2 7.6 1 4 0.54 2.4e+03 -0.9 0.0 6 24 63 81 62 87 0.81 Tetratricopeptide repeat TPR_2 PF07719.17 34 CP023447_00057 - 453 0.0002 21.2 7.6 2 4 4.6e-05 0.21 11.8 0.3 4 29 128 153 126 155 0.91 Tetratricopeptide repeat TPR_2 PF07719.17 34 CP023447_00057 - 453 0.0002 21.2 7.6 3 4 0.14 6.3e+02 0.9 0.3 18 31 156 169 154 172 0.82 Tetratricopeptide repeat TPR_2 PF07719.17 34 CP023447_00057 - 453 0.0002 21.2 7.6 4 4 0.00027 1.2 9.4 0.1 11 34 223 246 213 246 0.86 Tetratricopeptide repeat HZS_alpha PF18582.1 99 CP023447_00057 - 453 0.0024 18.3 0.0 1 2 0.52 2.3e+03 -0.9 0.0 33 72 99 138 74 146 0.73 Hydrazine synthase alpha subunit middle domain HZS_alpha PF18582.1 99 CP023447_00057 - 453 0.0024 18.3 0.0 2 2 3.5e-06 0.016 15.7 0.0 42 90 399 447 355 450 0.79 Hydrazine synthase alpha subunit middle domain TPR_6 PF13174.6 33 CP023447_00057 - 453 0.33 11.7 2.6 1 3 0.16 7e+02 1.2 0.0 7 26 132 151 130 154 0.85 Tetratricopeptide repeat TPR_6 PF13174.6 33 CP023447_00057 - 453 0.33 11.7 2.6 2 3 0.39 1.8e+03 -0.0 0.1 13 25 153 164 148 168 0.82 Tetratricopeptide repeat TPR_6 PF13174.6 33 CP023447_00057 - 453 0.33 11.7 2.6 3 3 0.0012 5.5 7.8 0.1 6 32 218 245 214 246 0.77 Tetratricopeptide repeat TPR_8 PF13181.6 34 CP023447_00057 - 453 1.5 9.2 4.2 1 4 0.39 1.7e+03 -0.3 0.0 6 20 63 77 62 86 0.85 Tetratricopeptide repeat TPR_8 PF13181.6 34 CP023447_00057 - 453 1.5 9.2 4.2 2 4 0.0017 7.7 7.0 0.1 8 29 132 153 131 157 0.88 Tetratricopeptide repeat TPR_8 PF13181.6 34 CP023447_00057 - 453 1.5 9.2 4.2 3 4 0.19 8.5e+02 0.6 0.3 16 26 154 164 152 172 0.87 Tetratricopeptide repeat TPR_8 PF13181.6 34 CP023447_00057 - 453 1.5 9.2 4.2 4 4 2 9.1e+03 -2.6 0.0 23 30 228 235 226 245 0.60 Tetratricopeptide repeat DUF1425 PF07233.12 92 CP023447_00058 - 131 7.2e-08 32.2 0.0 1 1 4.9e-12 8.8e-08 31.9 0.0 20 91 48 118 29 119 0.84 Protein of unknown function (DUF1425) LpoB PF13036.6 147 CP023447_00059 - 207 6.4e-45 152.7 0.1 1 1 8.9e-49 8e-45 152.4 0.1 1 147 47 196 47 196 0.97 Peptidoglycan-synthase activator LpoB DUF3799 PF12684.7 234 CP023447_00059 - 207 0.12 12.1 0.0 1 2 5.2e-05 0.46 10.2 0.0 71 112 46 89 14 102 0.79 PDDEXK-like domain of unknown function (DUF3799) DUF3799 PF12684.7 234 CP023447_00059 - 207 0.12 12.1 0.0 2 2 0.081 7.3e+02 -0.3 0.0 29 81 112 160 92 170 0.67 PDDEXK-like domain of unknown function (DUF3799) CTP_synth_N PF06418.14 265 CP023447_00060 - 445 0.0094 15.3 1.9 1 2 0.0022 20 4.4 0.1 76 125 187 236 184 251 0.86 CTP synthase N-terminus CTP_synth_N PF06418.14 265 CP023447_00060 - 445 0.0094 15.3 1.9 2 2 4.4e-05 0.4 10.0 0.3 76 128 319 373 300 383 0.86 CTP synthase N-terminus Rotamase_2 PF13145.6 121 CP023447_00060 - 445 0.13 13.1 0.4 1 3 0.35 3.1e+03 -1.0 0.2 3 19 47 63 45 113 0.54 PPIC-type PPIASE domain Rotamase_2 PF13145.6 121 CP023447_00060 - 445 0.13 13.1 0.4 2 3 1.4e-05 0.13 13.1 0.4 20 97 129 206 119 241 0.86 PPIC-type PPIASE domain Rotamase_2 PF13145.6 121 CP023447_00060 - 445 0.13 13.1 0.4 3 3 0.28 2.5e+03 -0.7 0.2 42 88 327 375 289 388 0.58 PPIC-type PPIASE domain CsgG PF03783.14 210 CP023447_00061 - 400 1.9e-06 27.3 3.0 1 2 0.2 9e+02 -1.0 0.0 183 201 40 59 16 68 0.62 Curli production assembly/transport component CsgG CsgG PF03783.14 210 CP023447_00061 - 400 1.9e-06 27.3 3.0 2 2 4.9e-10 2.2e-06 27.1 1.0 30 165 146 274 102 298 0.81 Curli production assembly/transport component CsgG LPP20 PF02169.16 97 CP023447_00061 - 400 0.0011 19.3 6.6 1 2 2.4e-07 0.0011 19.3 6.6 9 95 24 115 19 116 0.90 LPP20 lipoprotein LPP20 PF02169.16 97 CP023447_00061 - 400 0.0011 19.3 6.6 2 2 0.12 5.6e+02 1.0 0.2 26 67 269 306 252 315 0.69 LPP20 lipoprotein AAA_assoc_2 PF16193.5 81 CP023447_00061 - 400 0.0058 16.9 0.2 1 2 5.9e-05 0.26 11.6 0.1 21 79 132 190 124 190 0.86 AAA C-terminal domain AAA_assoc_2 PF16193.5 81 CP023447_00061 - 400 0.0058 16.9 0.2 2 2 0.047 2.1e+02 2.3 0.0 4 40 267 303 264 337 0.77 AAA C-terminal domain CarbopepD_reg_2 PF13715.6 88 CP023447_00061 - 400 1.4 8.9 6.8 1 4 0.25 1.1e+03 -0.3 0.1 16 35 56 76 49 84 0.79 CarboxypepD_reg-like domain CarbopepD_reg_2 PF13715.6 88 CP023447_00061 - 400 1.4 8.9 6.8 2 4 0.98 4.4e+03 -2.2 0.1 31 38 105 112 96 125 0.61 CarboxypepD_reg-like domain CarbopepD_reg_2 PF13715.6 88 CP023447_00061 - 400 1.4 8.9 6.8 3 4 0.00017 0.78 9.8 0.1 36 74 199 237 193 246 0.91 CarboxypepD_reg-like domain CarbopepD_reg_2 PF13715.6 88 CP023447_00061 - 400 1.4 8.9 6.8 4 4 0.26 1.1e+03 -0.4 0.0 60 86 249 273 238 275 0.72 CarboxypepD_reg-like domain Ribosomal_L21p PF00829.21 101 CP023447_00062 - 102 1.1e-31 109.0 5.4 1 1 1.4e-35 1.2e-31 108.9 5.4 1 101 1 100 1 100 0.97 Ribosomal prokaryotic L21 protein DUF5599 PF18141.1 93 CP023447_00062 - 102 0.028 14.6 0.1 1 1 4.7e-06 0.043 14.1 0.1 25 64 5 44 1 72 0.84 Domain of unknown function (DUF5599) Ribosomal_L27 PF01016.19 79 CP023447_00063 - 84 3.7e-38 129.4 5.0 1 1 2.3e-42 4.1e-38 129.3 5.0 1 79 2 81 2 81 0.98 Ribosomal L27 protein GTP1_OBG PF01018.22 155 CP023447_00064 - 345 1.1e-54 184.2 7.9 1 1 3.3e-58 1.5e-54 183.8 7.9 1 155 3 157 3 157 0.99 GTP1/OBG MMR_HSR1 PF01926.23 114 CP023447_00064 - 345 1.3e-21 76.8 0.0 1 1 4.6e-25 2.1e-21 76.2 0.0 1 101 160 267 160 316 0.88 50S ribosome-binding GTPase FeoB_N PF02421.18 156 CP023447_00064 - 345 2.5e-09 36.9 0.0 1 2 1.1e-12 5.1e-09 35.8 0.0 3 57 161 216 159 262 0.90 Ferrous iron transport protein B FeoB_N PF02421.18 156 CP023447_00064 - 345 2.5e-09 36.9 0.0 2 2 1 4.5e+03 -3.0 0.0 137 152 315 330 287 332 0.56 Ferrous iron transport protein B MeaB PF03308.16 267 CP023447_00064 - 345 0.049 12.6 0.0 1 2 6.6e-05 0.3 10.0 0.0 32 49 161 178 156 184 0.89 Methylmalonyl Co-A mutase-associated GTPase MeaB MeaB PF03308.16 267 CP023447_00064 - 345 0.049 12.6 0.0 2 2 0.1 4.5e+02 -0.4 0.0 200 232 309 341 275 344 0.59 Methylmalonyl Co-A mutase-associated GTPase MeaB AA_kinase PF00696.28 241 CP023447_00065 - 251 5.3e-37 127.7 0.6 1 1 3.4e-41 6.1e-37 127.5 0.6 1 239 2 226 2 228 0.93 Amino acid kinase family Formyl_trans_N PF00551.19 181 CP023447_00066 - 305 3e-35 121.6 0.0 1 1 5.2e-39 4.7e-35 121.0 0.0 1 164 2 165 2 181 0.94 Formyl transferase Formyl_trans_C PF02911.18 100 CP023447_00066 - 305 5.1e-20 71.6 0.0 1 1 1e-23 9.1e-20 70.8 0.0 1 99 202 296 202 297 0.97 Formyl transferase, C-terminal domain BPL_LplA_LipB PF03099.19 131 CP023447_00067 - 217 3.8e-13 49.5 0.0 1 1 5.7e-17 5.1e-13 49.1 0.0 3 117 13 123 11 136 0.86 Biotin/lipoate A/B protein ligase family Ubiquitin_4 PF18036.1 89 CP023447_00067 - 217 0.034 14.2 0.0 1 1 8e-06 0.072 13.1 0.0 18 64 138 182 131 191 0.87 Ubiquitin-like domain AAA_31 PF13614.6 177 CP023447_00068 - 261 1.3e-65 220.7 3.2 1 2 1.2e-68 1.3e-65 220.7 3.2 2 177 3 180 2 180 0.97 AAA domain AAA_31 PF13614.6 177 CP023447_00068 - 261 1.3e-65 220.7 3.2 2 2 3.8 4e+03 -2.4 0.0 52 74 203 213 187 232 0.38 AAA domain CbiA PF01656.23 128 CP023447_00068 - 261 3.7e-26 91.7 0.2 1 1 4.9e-29 5.2e-26 91.2 0.2 1 128 5 239 5 239 0.96 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 262 CP023447_00068 - 261 2.2e-14 53.4 0.9 1 1 3.4e-16 3.6e-13 49.4 0.5 2 153 4 173 3 182 0.72 ATPase MipZ ParA PF10609.9 246 CP023447_00068 - 261 1.6e-12 47.5 0.2 1 2 1.9e-11 2e-08 34.0 0.0 3 41 2 40 1 62 0.93 NUBPL iron-transfer P-loop NTPase ParA PF10609.9 246 CP023447_00068 - 261 1.6e-12 47.5 0.2 2 2 0.00011 0.12 11.8 0.1 101 244 111 258 88 260 0.69 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 234 CP023447_00068 - 261 2e-10 40.6 0.0 1 1 3.2e-13 3.4e-10 39.8 0.0 3 146 4 151 1 161 0.88 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 271 CP023447_00068 - 261 3.8e-09 36.4 0.5 1 2 2.7e-10 2.8e-07 30.2 0.0 7 44 10 47 4 77 0.86 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_NifH PF00142.18 271 CP023447_00068 - 261 3.8e-09 36.4 0.5 2 2 0.016 17 4.7 0.1 112 244 117 259 101 261 0.65 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 305 CP023447_00068 - 261 3.8e-08 32.9 0.3 1 2 1.2e-09 1.2e-06 27.9 0.0 8 42 10 44 3 59 0.90 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 CP023447_00068 - 261 3.8e-08 32.9 0.3 2 2 0.041 44 3.1 0.1 122 137 118 133 90 246 0.82 Anion-transporting ATPase VirC1 PF07015.11 231 CP023447_00068 - 261 6.2e-05 22.4 0.2 1 1 1.7e-07 0.00018 20.9 0.1 2 41 3 42 2 128 0.86 VirC1 protein SRP54 PF00448.22 196 CP023447_00068 - 261 0.0032 17.1 1.2 1 2 1.7e-05 0.018 14.7 0.2 11 40 13 42 4 81 0.85 SRP54-type protein, GTPase domain SRP54 PF00448.22 196 CP023447_00068 - 261 0.0032 17.1 1.2 2 2 0.23 2.4e+02 1.2 0.1 62 91 100 128 72 131 0.73 SRP54-type protein, GTPase domain DUF1027 PF06265.11 85 CP023447_00068 - 261 0.028 14.4 0.1 1 2 0.0026 2.7 8.0 0.0 18 39 106 127 94 145 0.84 Protein of unknown function (DUF1027) DUF1027 PF06265.11 85 CP023447_00068 - 261 0.028 14.4 0.1 2 2 0.049 52 3.9 0.0 42 59 175 192 168 213 0.67 Protein of unknown function (DUF1027) DUF1906 PF08924.11 198 CP023447_00068 - 261 0.051 13.7 0.0 1 2 0.12 1.2e+02 2.7 0.0 63 100 10 45 5 49 0.86 Domain of unknown function (DUF1906) DUF1906 PF08924.11 198 CP023447_00068 - 261 0.051 13.7 0.0 2 2 0.0014 1.5 9.0 0.0 94 150 152 214 138 232 0.73 Domain of unknown function (DUF1906) AAA_24 PF13479.6 197 CP023447_00068 - 261 0.063 13.0 0.1 1 1 0.00012 0.13 12.0 0.1 11 82 12 137 10 154 0.75 AAA domain CLP1_P PF16575.5 188 CP023447_00068 - 261 0.069 12.9 0.1 1 2 0.00016 0.17 11.6 0.0 4 35 13 44 11 50 0.91 mRNA cleavage and polyadenylation factor CLP1 P-loop CLP1_P PF16575.5 188 CP023447_00068 - 261 0.069 12.9 0.1 2 2 5.4 5.7e+03 -3.1 0.0 77 99 192 214 186 223 0.59 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 194 CP023447_00068 - 261 0.088 12.4 0.1 1 2 0.00037 0.39 10.2 0.0 41 59 11 30 4 55 0.80 AAA domain AAA_25 PF13481.6 194 CP023447_00068 - 261 0.088 12.4 0.1 2 2 0.75 7.9e+02 -0.5 0.0 131 150 112 128 85 150 0.73 AAA domain MeaB PF03308.16 267 CP023447_00068 - 261 0.088 11.8 0.1 1 1 0.00013 0.14 11.1 0.1 39 74 13 48 4 51 0.93 Methylmalonyl Co-A mutase-associated GTPase MeaB SecA_DEAD PF07517.14 290 CP023447_00068 - 261 0.25 10.6 1.7 1 2 0.0046 4.8 6.4 0.2 94 126 7 39 4 41 0.92 SecA DEAD-like domain SecA_DEAD PF07517.14 290 CP023447_00068 - 261 0.25 10.6 1.7 2 2 0.045 48 3.1 0.1 190 213 105 128 96 148 0.80 SecA DEAD-like domain ResIII PF04851.15 171 CP023447_00068 - 261 0.54 10.2 3.1 1 2 0.0011 1.2 9.2 0.8 33 139 12 127 5 129 0.56 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP023447_00068 - 261 0.54 10.2 3.1 2 2 0.63 6.7e+02 0.2 0.1 57 94 160 203 150 230 0.58 Type III restriction enzyme, res subunit ParBc PF02195.18 90 CP023447_00069 - 278 5.4e-26 90.7 0.6 1 2 1.4e-28 3.6e-25 88.1 0.1 1 90 32 121 32 121 0.99 ParB-like nuclease domain ParBc PF02195.18 90 CP023447_00069 - 278 5.4e-26 90.7 0.6 2 2 0.5 1.3e+03 -0.2 0.0 5 31 219 245 215 251 0.76 ParB-like nuclease domain HTH_ParB PF17762.1 52 CP023447_00069 - 278 1.1e-14 54.0 0.6 1 3 0.21 5.3e+02 0.5 0.0 28 42 112 127 103 128 0.78 HTH domain found in ParB protein HTH_ParB PF17762.1 52 CP023447_00069 - 278 1.1e-14 54.0 0.6 2 3 4.2 1.1e+04 -3.7 0.1 34 41 142 149 138 153 0.62 HTH domain found in ParB protein HTH_ParB PF17762.1 52 CP023447_00069 - 278 1.1e-14 54.0 0.6 3 3 4.3e-18 1.1e-14 54.0 0.6 3 52 173 221 172 221 0.96 HTH domain found in ParB protein Raf1_N PF18578.1 106 CP023447_00069 - 278 0.13 12.8 0.4 1 3 0.028 73 3.9 0.0 29 50 47 68 41 79 0.87 Rubisco accumulation factor 1 alpha helical domain Raf1_N PF18578.1 106 CP023447_00069 - 278 0.13 12.8 0.4 2 3 1.8 4.7e+03 -1.9 0.0 39 53 130 144 107 155 0.66 Rubisco accumulation factor 1 alpha helical domain Raf1_N PF18578.1 106 CP023447_00069 - 278 0.13 12.8 0.4 3 3 0.0089 23 5.5 0.0 15 54 193 232 185 241 0.85 Rubisco accumulation factor 1 alpha helical domain Popeye PF04831.13 140 CP023447_00069 - 278 0.13 12.4 0.1 1 1 6.6e-05 0.17 12.1 0.1 70 115 116 212 109 273 0.76 Popeye protein conserved region HTH_19 PF12844.7 65 CP023447_00069 - 278 0.14 12.2 5.4 1 4 0.25 6.4e+02 0.5 0.0 20 40 22 41 17 61 0.84 Helix-turn-helix domain HTH_19 PF12844.7 65 CP023447_00069 - 278 0.14 12.2 5.4 2 4 0.25 6.4e+02 0.5 0.1 19 41 102 127 87 141 0.55 Helix-turn-helix domain HTH_19 PF12844.7 65 CP023447_00069 - 278 0.14 12.2 5.4 3 4 0.0053 14 5.8 0.1 12 31 143 162 142 163 0.94 Helix-turn-helix domain HTH_19 PF12844.7 65 CP023447_00069 - 278 0.14 12.2 5.4 4 4 0.023 60 3.8 0.1 29 55 219 250 208 257 0.83 Helix-turn-helix domain LAGLIDADG_WhiA PF14527.6 93 CP023447_00069 - 278 0.25 11.4 4.6 1 3 0.046 1.2e+02 2.9 0.0 30 65 51 86 49 108 0.79 WhiA LAGLIDADG-like domain LAGLIDADG_WhiA PF14527.6 93 CP023447_00069 - 278 0.25 11.4 4.6 2 3 0.73 1.9e+03 -1.0 0.1 62 74 155 167 129 221 0.66 WhiA LAGLIDADG-like domain LAGLIDADG_WhiA PF14527.6 93 CP023447_00069 - 278 0.25 11.4 4.6 3 3 0.0005 1.3 9.2 0.3 31 74 234 275 227 277 0.85 WhiA LAGLIDADG-like domain DUF365 PF04033.12 96 CP023447_00069 - 278 0.81 10.0 3.5 1 2 0.88 2.3e+03 -1.0 0.0 20 51 118 153 100 168 0.63 Domain of unknown function (DUF365) DUF365 PF04033.12 96 CP023447_00069 - 278 0.81 10.0 3.5 2 2 0.00048 1.2 9.4 1.8 28 83 214 273 194 278 0.77 Domain of unknown function (DUF365) ATP-synt_B PF00430.18 132 CP023447_00070 - 141 2.3e-10 40.7 10.5 1 1 2.2e-13 3.1e-10 40.3 10.5 3 115 11 123 9 137 0.95 ATP synthase B/B' CF(0) PMT2_N PF17987.1 125 CP023447_00070 - 141 0.034 14.3 0.7 1 1 3.3e-05 0.046 13.9 0.7 16 80 50 112 35 133 0.78 Phosphoethanolamine N-methyltransferase 2 N-terminal DUF948 PF06103.11 89 CP023447_00070 - 141 0.041 14.1 1.5 1 2 6.9e-05 0.095 13.0 0.8 5 73 13 81 9 108 0.86 Bacterial protein of unknown function (DUF948) DUF948 PF06103.11 89 CP023447_00070 - 141 0.041 14.1 1.5 2 2 1.8 2.5e+03 -1.2 0.0 32 55 113 136 90 139 0.67 Bacterial protein of unknown function (DUF948) PAGK PF15284.6 64 CP023447_00070 - 141 0.053 13.4 0.0 1 1 7.5e-05 0.1 12.5 0.0 6 26 15 35 10 53 0.79 Phage-encoded virulence factor DUF5119 PF17145.4 196 CP023447_00070 - 141 0.067 13.1 0.1 1 1 5.8e-05 0.08 12.9 0.1 51 105 40 96 34 122 0.78 Domain of unknown function (DUF5119) Spc7 PF08317.11 310 CP023447_00070 - 141 0.11 11.4 14.5 1 1 9e-05 0.12 11.2 14.5 137 251 29 139 25 141 0.80 Spc7 kinetochore protein CSG2 PF16965.5 397 CP023447_00070 - 141 0.17 10.8 1.1 1 1 0.00014 0.19 10.6 1.1 47 136 9 97 3 126 0.63 Ceramide synthase regulator HTH_37 PF13744.6 80 CP023447_00070 - 141 0.19 11.7 6.6 1 2 0.077 1.1e+02 2.9 0.3 4 51 41 86 39 92 0.78 Helix-turn-helix domain HTH_37 PF13744.6 80 CP023447_00070 - 141 0.19 11.7 6.6 2 2 0.0002 0.27 11.2 2.6 7 58 89 140 85 141 0.89 Helix-turn-helix domain Flg_hook PF02120.16 85 CP023447_00070 - 141 0.42 10.5 5.1 1 2 0.004 5.5 6.9 0.8 40 66 81 107 63 116 0.86 Flagellar hook-length control protein FliK Flg_hook PF02120.16 85 CP023447_00070 - 141 0.42 10.5 5.1 2 2 0.0082 11 5.9 0.4 42 66 112 136 107 140 0.75 Flagellar hook-length control protein FliK ERG2_Sigma1R PF04622.12 209 CP023447_00070 - 141 0.44 9.8 1.7 1 1 0.00042 0.58 9.5 1.2 14 63 60 109 54 126 0.79 ERG2 and Sigma1 receptor like protein CemA PF03040.14 229 CP023447_00070 - 141 1.2 9.1 6.4 1 1 0.001 1.4 8.8 6.4 12 115 10 113 5 138 0.82 CemA family Macoilin PF09726.9 671 CP023447_00070 - 141 1.3 7.5 11.1 1 1 0.0011 1.5 7.3 11.1 465 559 40 133 25 140 0.81 Macoilin family GrpE PF01025.19 166 CP023447_00070 - 141 6.9 6.3 14.4 1 2 0.0011 1.5 8.4 2.6 17 62 39 84 30 88 0.89 GrpE GrpE PF01025.19 166 CP023447_00070 - 141 6.9 6.3 14.4 2 2 0.051 70 3.0 5.7 9 63 86 140 84 141 0.87 GrpE ATP-synt_B PF00430.18 132 CP023447_00071 - 62 0.008 16.3 0.2 1 2 0.69 1.2e+04 -3.8 0.4 10 18 5 13 3 17 0.44 ATP synthase B/B' CF(0) ATP-synt_B PF00430.18 132 CP023447_00071 - 62 0.008 16.3 0.2 2 2 4.4e-07 0.008 16.3 0.2 5 31 30 56 27 59 0.91 ATP synthase B/B' CF(0) V-ATPase_G_2 PF16999.5 104 CP023447_00072 - 89 0.00022 21.6 2.8 1 1 6.1e-08 0.00022 21.6 2.8 19 75 2 62 1 88 0.85 Vacuolar (H+)-ATPase G subunit Plasmid_parti PF01672.16 85 CP023447_00072 - 89 0.0019 18.8 0.8 1 1 7.6e-07 0.0027 18.3 0.8 38 82 26 70 4 72 0.90 Putative plasmid partition protein ATP-synt_B PF00430.18 132 CP023447_00072 - 89 0.0036 17.4 3.6 1 1 1.2e-06 0.0042 17.2 3.6 58 102 2 46 1 64 0.88 ATP synthase B/B' CF(0) DUF4954 PF16314.5 655 CP023447_00072 - 89 0.011 14.0 1.3 1 1 3e-06 0.011 13.9 1.3 508 579 13 85 2 89 0.90 Domain of unknown function (DUF4954) Tweety PF04906.13 406 CP023447_00072 - 89 0.64 8.6 2.7 1 1 0.0002 0.7 8.5 2.7 93 172 3 81 1 88 0.77 Tweety OSCP PF00213.18 172 CP023447_00073 - 173 3.3e-22 79.4 3.0 1 1 2.5e-26 4.5e-22 79.0 3.0 1 142 5 139 5 154 0.95 ATP synthase delta (OSCP) subunit ATP-synt_ab PF00006.25 213 CP023447_00074 - 501 1.4e-76 256.9 0.1 1 1 8.2e-80 2.1e-76 256.3 0.1 1 213 149 364 149 364 0.98 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.27 126 CP023447_00074 - 501 6.3e-51 172.0 0.6 1 1 4.1e-54 1e-50 171.2 0.6 1 126 371 496 371 496 1.00 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.23 69 CP023447_00074 - 501 3e-17 62.9 1.7 1 1 3.6e-20 9.3e-17 61.3 1.7 3 68 26 91 24 92 0.97 ATP synthase alpha/beta family, beta-barrel domain ATPase PF06745.13 231 CP023447_00074 - 501 2.2e-05 23.9 1.4 1 2 5.3e-08 0.00013 21.4 0.3 2 70 147 212 146 220 0.90 KaiC ATPase PF06745.13 231 CP023447_00074 - 501 2.2e-05 23.9 1.4 2 2 0.16 4.1e+02 0.1 0.0 85 122 463 500 453 501 0.73 KaiC Arginosuc_synth PF00764.19 388 CP023447_00074 - 501 0.046 13.0 0.2 1 1 3.2e-05 0.082 12.2 0.2 10 57 176 223 173 232 0.93 Arginosuccinate synthase HAS-barrel PF09378.10 92 CP023447_00074 - 501 0.061 13.5 0.1 1 2 9.9e-05 0.25 11.5 0.1 5 66 28 94 25 116 0.71 HAS barrel domain HAS-barrel PF09378.10 92 CP023447_00074 - 501 0.061 13.5 0.1 2 2 3 7.8e+03 -2.9 0.0 52 73 201 222 184 228 0.67 HAS barrel domain Fe_dep_repress PF01325.19 60 CP023447_00074 - 501 0.074 13.3 0.0 1 1 7.4e-05 0.19 11.9 0.0 32 54 198 220 194 222 0.91 Iron dependent repressor, N-terminal DNA binding domain ATP-synt PF00231.19 279 CP023447_00075 - 294 4.2e-83 279.3 12.2 1 1 1e-86 4.7e-83 279.1 12.2 1 278 3 292 3 293 0.91 ATP synthase PTEN_C2 PF10409.9 135 CP023447_00075 - 294 0.11 12.3 0.8 1 1 4.8e-05 0.22 11.3 0.8 36 88 32 88 3 91 0.72 C2 domain of PTEN tumour-suppressor protein Snf7 PF03357.21 173 CP023447_00075 - 294 0.12 12.0 8.4 1 2 7.4e-06 0.033 13.8 3.2 65 118 2 61 1 66 0.87 Snf7 Snf7 PF03357.21 173 CP023447_00075 - 294 0.12 12.0 8.4 2 2 0.096 4.3e+02 0.4 0.2 82 102 248 268 222 293 0.66 Snf7 BLOC1_2 PF10046.9 96 CP023447_00075 - 294 6.4 7.2 11.4 1 2 0.055 2.4e+02 2.1 2.6 14 68 10 64 2 71 0.65 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP023447_00075 - 294 6.4 7.2 11.4 2 2 0.00036 1.6 9.1 1.6 20 62 234 276 219 294 0.83 Biogenesis of lysosome-related organelles complex-1 subunit 2 ATP-synt_ab PF00006.25 213 CP023447_00076 - 465 6.6e-65 218.7 0.0 1 1 3.2e-68 9.7e-65 218.2 0.0 1 213 132 345 132 345 0.97 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 69 CP023447_00076 - 465 1.2e-18 67.3 0.1 1 1 1.2e-21 3.4e-18 65.9 0.1 1 69 5 75 5 75 0.93 ATP synthase alpha/beta family, beta-barrel domain T3SS_ATPase_C PF18269.1 72 CP023447_00076 - 465 0.014 15.2 0.8 1 2 8.8e-05 0.26 11.2 0.2 3 28 355 380 353 412 0.71 T3SS EscN ATPase C-terminal domain T3SS_ATPase_C PF18269.1 72 CP023447_00076 - 465 0.014 15.2 0.8 2 2 0.25 7.6e+02 0.1 0.0 38 50 452 464 451 465 0.87 T3SS EscN ATPase C-terminal domain RsgA_GTPase PF03193.16 167 CP023447_00076 - 465 0.047 13.6 0.0 1 1 3.5e-05 0.1 12.5 0.0 90 157 136 203 118 204 0.88 RsgA GTPase NB-ARC PF00931.22 252 CP023447_00076 - 465 0.11 11.7 0.3 1 2 7.5e-05 0.22 10.7 0.1 23 55 148 180 134 212 0.84 NB-ARC domain NB-ARC PF00931.22 252 CP023447_00076 - 465 0.11 11.7 0.3 2 2 0.81 2.4e+03 -2.6 0.0 8 28 364 383 359 405 0.78 NB-ARC domain AAA_19 PF13245.6 146 CP023447_00076 - 465 0.16 12.3 0.7 1 2 9.6e-05 0.29 11.5 0.1 8 34 143 169 138 180 0.84 AAA domain AAA_19 PF13245.6 146 CP023447_00076 - 465 0.16 12.3 0.7 2 2 4.5 1.4e+04 -3.7 0.0 97 116 371 391 341 398 0.69 AAA domain ATP-synt_DE_N PF02823.16 80 CP023447_00077 - 129 2.7e-24 84.9 0.2 1 1 1.8e-28 3.3e-24 84.6 0.2 2 80 6 84 5 84 0.97 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MotA_ExbB PF01618.16 127 CP023447_00078 - 184 3.1e-25 88.4 0.1 1 1 2.2e-29 4e-25 88.0 0.1 22 123 72 171 48 175 0.88 MotA/TolQ/ExbB proton channel family ExbD PF02472.16 130 CP023447_00079 - 129 2.8e-28 98.7 2.3 1 1 1.8e-32 3.2e-28 98.5 2.3 3 128 5 129 4 129 0.96 Biopolymer transport protein ExbD/TolR TonB_2 PF13103.6 85 CP023447_00080 - 259 1.5e-12 47.6 0.1 1 1 7.6e-16 2.7e-12 46.7 0.1 1 81 167 248 167 251 0.84 TonB C terminal SHE3 PF17078.5 228 CP023447_00080 - 259 0.0069 16.1 2.0 1 1 3.1e-06 0.011 15.5 2.0 148 205 77 151 63 198 0.70 SWI5-dependent HO expression protein 3 TRA-1_regulated PF02343.16 130 CP023447_00080 - 259 0.15 12.1 1.4 1 2 6.7e-05 0.24 11.5 0.8 19 96 37 119 27 140 0.82 TRA-1 regulated protein R03H10.4 TRA-1_regulated PF02343.16 130 CP023447_00080 - 259 0.15 12.1 1.4 2 2 0.95 3.4e+03 -2.0 0.0 47 82 135 169 117 174 0.61 TRA-1 regulated protein R03H10.4 DUF3349 PF11829.8 95 CP023447_00080 - 259 0.36 11.6 2.2 1 2 0.00016 0.56 11.0 0.5 40 83 53 99 40 105 0.77 Protein of unknown function (DUF3349) DUF3349 PF11829.8 95 CP023447_00080 - 259 0.36 11.6 2.2 2 2 0.67 2.4e+03 -0.6 0.0 39 62 140 164 109 192 0.74 Protein of unknown function (DUF3349) DUF948 PF06103.11 89 CP023447_00080 - 259 8.7 6.7 6.8 1 2 0.0017 6.2 7.2 3.7 33 82 64 114 12 119 0.56 Bacterial protein of unknown function (DUF948) DUF948 PF06103.11 89 CP023447_00080 - 259 8.7 6.7 6.8 2 2 2.1 7.4e+03 -2.7 0.1 43 53 137 147 131 164 0.52 Bacterial protein of unknown function (DUF948) Pectate_lyase22 PF14583.6 386 CP023447_00081 - 402 1.9e-08 33.4 2.3 1 3 0.29 7.5e+02 -1.5 0.0 46 75 183 213 159 223 0.69 Oligogalacturonate lyase Pectate_lyase22 PF14583.6 386 CP023447_00081 - 402 1.9e-08 33.4 2.3 2 3 1.4e-10 3.5e-07 29.2 0.3 44 117 226 299 221 323 0.83 Oligogalacturonate lyase Pectate_lyase22 PF14583.6 386 CP023447_00081 - 402 1.9e-08 33.4 2.3 3 3 0.015 37 2.8 0.0 57 99 329 369 319 385 0.83 Oligogalacturonate lyase PD40 PF07676.12 38 CP023447_00081 - 402 2.7e-06 27.1 1.2 1 3 0.00012 0.3 11.1 0.2 2 38 255 291 254 291 0.76 WD40-like Beta Propeller Repeat PD40 PF07676.12 38 CP023447_00081 - 402 2.7e-06 27.1 1.2 2 3 0.018 47 4.1 0.0 23 37 319 335 317 336 0.93 WD40-like Beta Propeller Repeat PD40 PF07676.12 38 CP023447_00081 - 402 2.7e-06 27.1 1.2 3 3 0.00079 2 8.4 0.0 11 26 353 368 345 376 0.85 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 354 CP023447_00081 - 402 0.00048 19.0 1.1 1 3 0.00037 0.96 8.1 0.1 244 325 182 258 133 262 0.63 Dipeptidyl peptidase IV (DPP IV) N-terminal region DPPIV_N PF00930.21 354 CP023447_00081 - 402 0.00048 19.0 1.1 2 3 0.00048 1.2 7.8 0.3 24 93 243 318 239 323 0.85 Dipeptidyl peptidase IV (DPP IV) N-terminal region DPPIV_N PF00930.21 354 CP023447_00081 - 402 0.00048 19.0 1.1 3 3 0.03 77 1.9 0.0 25 60 334 368 321 371 0.85 Dipeptidyl peptidase IV (DPP IV) N-terminal region TolB_N PF04052.13 106 CP023447_00081 - 402 0.014 15.5 0.1 1 2 1.9e-05 0.05 13.8 0.1 3 56 22 74 20 85 0.84 TolB amino-terminal domain TolB_N PF04052.13 106 CP023447_00081 - 402 0.014 15.5 0.1 2 2 1.7 4.4e+03 -2.1 0.0 58 82 149 173 139 178 0.73 TolB amino-terminal domain MNE1 PF13762.6 150 CP023447_00081 - 402 0.017 15.1 0.6 1 2 5.9e-05 0.15 12.0 0.3 28 77 39 86 30 121 0.88 Mitochondrial splicing apparatus component MNE1 PF13762.6 150 CP023447_00081 - 402 0.017 15.1 0.6 2 2 0.24 6.1e+02 0.3 0.0 69 90 244 265 228 278 0.80 Mitochondrial splicing apparatus component Kelch_3 PF13415.6 49 CP023447_00081 - 402 0.25 11.7 4.5 1 4 0.84 2.1e+03 -0.9 0.1 18 29 75 86 68 101 0.79 Galactose oxidase, central domain Kelch_3 PF13415.6 49 CP023447_00081 - 402 0.25 11.7 4.5 2 4 0.021 54 4.2 0.0 20 34 199 213 190 224 0.81 Galactose oxidase, central domain Kelch_3 PF13415.6 49 CP023447_00081 - 402 0.25 11.7 4.5 3 4 0.0065 17 5.9 0.0 19 34 242 257 231 269 0.86 Galactose oxidase, central domain Kelch_3 PF13415.6 49 CP023447_00081 - 402 0.25 11.7 4.5 4 4 0.75 1.9e+03 -0.7 0.0 20 25 317 322 299 357 0.58 Galactose oxidase, central domain NUMOD1 PF07453.13 37 CP023447_00081 - 402 0.72 10.2 4.4 1 3 0.57 1.5e+03 -0.3 0.1 6 12 203 209 201 215 0.83 NUMOD1 domain NUMOD1 PF07453.13 37 CP023447_00081 - 402 0.72 10.2 4.4 2 3 0.00058 1.5 9.2 0.7 3 19 244 263 243 264 0.85 NUMOD1 domain NUMOD1 PF07453.13 37 CP023447_00081 - 402 0.72 10.2 4.4 3 3 2.7 6.9e+03 -2.5 0.0 7 15 264 272 264 277 0.85 NUMOD1 domain OmpA PF00691.20 95 CP023447_00082 - 165 7.2e-21 74.4 0.0 1 1 1.9e-24 1.1e-20 73.8 0.0 1 95 61 157 61 157 0.95 OmpA family ApbE PF02424.15 258 CP023447_00082 - 165 0.028 14.0 0.0 1 1 6e-06 0.036 13.6 0.0 30 110 44 135 38 161 0.75 ApbE family Pilus_CpaD PF09476.10 201 CP023447_00082 - 165 0.051 13.3 0.3 1 2 0.0095 57 3.4 0.1 2 20 10 28 9 38 0.70 Pilus biogenesis CpaD protein (pilus_cpaD) Pilus_CpaD PF09476.10 201 CP023447_00082 - 165 0.051 13.3 0.3 2 2 0.0003 1.8 8.2 0.0 86 121 108 143 93 156 0.85 Pilus biogenesis CpaD protein (pilus_cpaD) TPR_6 PF13174.6 33 CP023447_00083 - 315 5.6e-07 29.8 0.1 1 2 0.0028 2.8 8.8 0.0 3 25 238 260 236 260 0.91 Tetratricopeptide repeat TPR_6 PF13174.6 33 CP023447_00083 - 315 5.6e-07 29.8 0.1 2 2 2.9e-06 0.0029 18.1 0.0 3 33 275 305 273 305 0.97 Tetratricopeptide repeat TPR_2 PF07719.17 34 CP023447_00083 - 315 1.5e-05 24.8 0.1 1 2 6.3e-07 0.00062 19.7 0.1 1 27 235 261 235 266 0.91 Tetratricopeptide repeat TPR_2 PF07719.17 34 CP023447_00083 - 315 1.5e-05 24.8 0.1 2 2 0.23 2.3e+02 2.3 0.0 2 33 273 304 272 305 0.83 Tetratricopeptide repeat TPR_8 PF13181.6 34 CP023447_00083 - 315 0.00032 20.7 0.5 1 1 1.3e-06 0.0013 18.8 0.5 1 31 235 265 235 267 0.94 Tetratricopeptide repeat TPR_1 PF00515.28 34 CP023447_00083 - 315 0.00034 20.3 0.7 1 2 1.3e-06 0.0013 18.4 0.6 1 27 235 261 235 264 0.90 Tetratricopeptide repeat TPR_1 PF00515.28 34 CP023447_00083 - 315 0.00034 20.3 0.7 2 2 8.3 8.3e+03 -3.1 0.0 24 32 276 284 275 285 0.82 Tetratricopeptide repeat TPR_16 PF13432.6 68 CP023447_00083 - 315 0.0017 19.0 0.0 1 2 4.4e-05 0.044 14.4 0.0 8 58 212 259 205 261 0.87 Tetratricopeptide repeat TPR_16 PF13432.6 68 CP023447_00083 - 315 0.0017 19.0 0.0 2 2 0.31 3.1e+02 2.1 0.0 36 68 274 306 267 306 0.91 Tetratricopeptide repeat Jnk-SapK_ap_N PF09744.9 156 CP023447_00083 - 315 0.0051 17.0 9.1 1 3 5.2e-06 0.0051 17.0 9.1 36 118 44 125 43 135 0.89 JNK_SAPK-associated protein-1 Jnk-SapK_ap_N PF09744.9 156 CP023447_00083 - 315 0.0051 17.0 9.1 2 3 2.3 2.3e+03 -1.3 1.9 71 91 180 200 124 215 0.70 JNK_SAPK-associated protein-1 Jnk-SapK_ap_N PF09744.9 156 CP023447_00083 - 315 0.0051 17.0 9.1 3 3 1.2 1.2e+03 -0.3 0.8 72 92 181 201 167 231 0.64 JNK_SAPK-associated protein-1 BLOC1_2 PF10046.9 96 CP023447_00083 - 315 0.0088 16.3 8.4 1 3 8.8e-06 0.0088 16.3 8.4 11 89 35 114 26 115 0.87 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP023447_00083 - 315 0.0088 16.3 8.4 2 3 0.33 3.3e+02 1.7 0.8 14 51 108 146 102 161 0.68 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 CP023447_00083 - 315 0.0088 16.3 8.4 3 3 4.5 4.5e+03 -2.0 1.4 57 57 182 182 124 215 0.62 Biogenesis of lysosome-related organelles complex-1 subunit 2 CorA PF01544.18 292 CP023447_00083 - 315 0.043 13.1 3.5 1 1 7.4e-05 0.074 12.4 3.5 106 225 36 158 24 170 0.83 CorA-like Mg2+ transporter protein TPR_19 PF14559.6 68 CP023447_00083 - 315 0.043 14.3 0.1 1 1 0.00022 0.22 12.1 0.0 2 62 246 309 245 311 0.92 Tetratricopeptide repeat ANAPC3 PF12895.7 82 CP023447_00083 - 315 0.067 13.4 0.4 1 2 0.00021 0.21 11.8 0.3 22 71 234 284 223 291 0.82 Anaphase-promoting complex, cyclosome, subunit 3 ANAPC3 PF12895.7 82 CP023447_00083 - 315 0.067 13.4 0.4 2 2 0.0024 2.4 8.4 0.3 2 53 248 303 247 308 0.78 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 77 CP023447_00083 - 315 0.071 13.4 0.0 1 1 0.00017 0.17 12.2 0.0 6 35 238 267 234 297 0.70 Tetratricopeptide repeat DUF1664 PF07889.12 124 CP023447_00083 - 315 0.08 13.0 11.4 1 2 0.00093 0.92 9.5 1.7 57 122 35 100 29 101 0.79 Protein of unknown function (DUF1664) DUF1664 PF07889.12 124 CP023447_00083 - 315 0.08 13.0 11.4 2 2 0.00021 0.21 11.7 2.1 48 99 86 137 81 147 0.89 Protein of unknown function (DUF1664) Tropomyosin_1 PF12718.7 143 CP023447_00083 - 315 0.85 9.8 23.7 1 2 0.00013 0.13 12.5 14.0 19 102 42 125 35 133 0.92 Tropomyosin like Tropomyosin_1 PF12718.7 143 CP023447_00083 - 315 0.85 9.8 23.7 2 2 0.12 1.2e+02 2.8 2.1 52 96 179 224 150 232 0.74 Tropomyosin like DUF4407 PF14362.6 298 CP023447_00083 - 315 1.4 8.2 10.9 1 1 0.0022 2.2 7.6 10.9 116 237 50 199 34 227 0.66 Domain of unknown function (DUF4407) FAM76 PF16046.5 300 CP023447_00083 - 315 1.4 8.2 12.8 1 2 6.2e-05 0.062 12.6 4.3 206 296 42 135 17 137 0.81 FAM76 protein FAM76 PF16046.5 300 CP023447_00083 - 315 1.4 8.2 12.8 2 2 0.3 2.9e+02 0.6 1.3 156 189 178 210 149 263 0.54 FAM76 protein DUF4140 PF13600.6 98 CP023447_00083 - 315 1.9 9.0 11.3 1 3 0.012 12 6.4 0.1 53 96 32 75 20 82 0.81 N-terminal domain of unknown function (DUF4140) DUF4140 PF13600.6 98 CP023447_00083 - 315 1.9 9.0 11.3 2 3 0.038 38 4.8 1.5 47 98 86 137 77 137 0.86 N-terminal domain of unknown function (DUF4140) DUF4140 PF13600.6 98 CP023447_00083 - 315 1.9 9.0 11.3 3 3 0.11 1.1e+02 3.4 0.3 23 66 149 194 145 227 0.67 N-terminal domain of unknown function (DUF4140) Tweety PF04906.13 406 CP023447_00083 - 315 7.2 5.2 6.4 1 1 0.005 5 5.7 5.0 86 164 55 137 51 167 0.76 Tweety Golgin_A5 PF09787.9 306 CP023447_00083 - 315 8.1 5.8 18.9 1 1 0.036 35 3.7 18.6 45 180 42 166 26 228 0.54 Golgin subfamily A member 5 FKBP_C PF00254.28 94 CP023447_00084 - 189 2.6e-06 27.7 0.1 1 1 3e-10 5.3e-06 26.7 0.1 5 84 3 82 1 111 0.88 FKBP-type peptidyl-prolyl cis-trans isomerase Acyl_transf_1 PF00698.21 319 CP023447_00085 - 306 6.3e-21 75.2 0.0 1 1 8.3e-25 7.5e-21 75.0 0.0 2 264 5 272 4 296 0.77 Acyl transferase domain SAT PF16073.5 240 CP023447_00085 - 306 0.032 14.0 0.0 1 1 1.1e-05 0.096 12.4 0.0 73 189 57 154 33 190 0.80 Starter unit:ACP transacylase in aflatoxin biosynthesis PNP_UDP_1 PF01048.20 234 CP023447_00086 - 228 4.3e-43 147.2 0.0 1 1 2.8e-47 5e-43 147.0 0.0 1 225 2 217 2 227 0.86 Phosphorylase superfamily ATP_bind_3 PF01171.20 182 CP023447_00087 - 251 5.8e-22 78.3 0.0 1 1 1.4e-25 8.3e-22 77.8 0.0 2 162 28 190 27 195 0.86 PP-loop family NAD_synthase PF02540.17 242 CP023447_00087 - 251 0.0011 18.1 0.0 1 1 2.6e-07 0.0015 17.7 0.0 19 120 26 125 6 160 0.83 NAD synthase Asn_synthase PF00733.21 355 CP023447_00087 - 251 0.029 14.0 0.1 1 1 6.8e-06 0.041 13.6 0.1 21 85 29 96 22 137 0.81 Asparagine synthase Isochorismatase PF00857.20 175 CP023447_00088 - 173 9.1e-14 52.0 0.0 1 1 1.1e-17 1e-13 51.9 0.0 2 170 4 172 3 173 0.91 Isochorismatase family rpo132 PF12415.8 32 CP023447_00088 - 173 0.14 11.5 0.1 1 3 0.036 3.2e+02 0.7 0.0 1 10 13 22 13 23 0.95 Poxvirus DNA dependent RNA polymerase rpo132 PF12415.8 32 CP023447_00088 - 173 0.14 11.5 0.1 2 3 0.59 5.3e+03 -3.2 0.1 7 10 47 50 47 54 0.82 Poxvirus DNA dependent RNA polymerase rpo132 PF12415.8 32 CP023447_00088 - 173 0.14 11.5 0.1 3 3 0.00029 2.6 7.4 0.0 3 14 71 82 70 83 0.95 Poxvirus DNA dependent RNA polymerase RecO_N_2 PF13114.6 71 CP023447_00089 - 204 2e-32 110.7 0.1 1 2 9.3e-36 5.6e-32 109.3 0.0 1 71 1 71 1 71 0.99 RecO N terminal RecO_N_2 PF13114.6 71 CP023447_00089 - 204 2e-32 110.7 0.1 2 2 1.2 7.3e+03 -3.2 0.0 59 69 90 100 88 101 0.80 RecO N terminal Mad3_BUB1_I PF08311.12 124 CP023447_00089 - 204 0.021 14.8 0.1 1 1 6e-06 0.036 14.0 0.1 17 58 74 116 65 156 0.80 Mad3/BUB1 homology region 1 RecO_N PF11967.8 80 CP023447_00089 - 204 0.022 14.7 0.0 1 1 6.2e-06 0.037 14.0 0.0 7 30 2 25 1 43 0.85 Recombination protein O N terminal UPF0054 PF02130.17 128 CP023447_00090 - 135 2.7e-34 117.8 1.0 1 1 3.5e-38 3.1e-34 117.5 1.0 22 127 18 121 4 122 0.91 Uncharacterized protein family UPF0054 PIG-S PF10510.9 512 CP023447_00090 - 135 0.036 12.9 0.0 1 1 4e-06 0.036 12.9 0.0 321 388 64 124 19 135 0.77 Phosphatidylinositol-glycan biosynthesis class S protein DUF573 PF04504.14 95 CP023447_00091 - 229 0.021 15.5 8.4 1 3 0.093 8.3e+02 0.7 0.1 35 65 61 92 30 121 0.55 Protein of unknown function, DUF573 DUF573 PF04504.14 95 CP023447_00091 - 229 0.021 15.5 8.4 2 3 5.6e-06 0.051 14.2 4.7 14 88 86 161 58 165 0.76 Protein of unknown function, DUF573 DUF573 PF04504.14 95 CP023447_00091 - 229 0.021 15.5 8.4 3 3 0.064 5.8e+02 1.2 0.0 5 27 190 212 186 227 0.74 Protein of unknown function, DUF573 GNAT_acetyltr_2 PF13718.6 227 CP023447_00091 - 229 0.18 11.2 3.2 1 2 0.07 6.3e+02 -0.4 0.0 113 142 14 43 7 107 0.59 GNAT acetyltransferase 2 GNAT_acetyltr_2 PF13718.6 227 CP023447_00091 - 229 0.18 11.2 3.2 2 2 1.9e-05 0.17 11.2 1.4 117 189 129 202 65 208 0.72 GNAT acetyltransferase 2 Dus PF01207.17 310 CP023447_00092 - 308 6.2e-76 255.5 0.0 1 1 3e-79 7.6e-76 255.2 0.0 2 302 11 302 10 307 0.94 Dihydrouridine synthase (Dus) TIM PF00121.18 243 CP023447_00092 - 308 0.00027 20.4 0.1 1 1 1.9e-07 0.00047 19.6 0.1 195 234 185 224 175 233 0.89 Triosephosphate isomerase TMP-TENI PF02581.17 181 CP023447_00092 - 308 0.0067 15.8 0.1 1 1 5.7e-06 0.014 14.7 0.1 109 175 152 217 129 222 0.72 Thiamine monophosphate synthase PdxJ PF03740.13 234 CP023447_00092 - 308 0.0093 15.1 0.4 1 3 0.014 36 3.4 0.0 22 44 147 169 137 177 0.85 Pyridoxal phosphate biosynthesis protein PdxJ PdxJ PF03740.13 234 CP023447_00092 - 308 0.0093 15.1 0.4 2 3 0.0002 0.52 9.4 0.0 170 215 179 224 168 230 0.88 Pyridoxal phosphate biosynthesis protein PdxJ PdxJ PF03740.13 234 CP023447_00092 - 308 0.0093 15.1 0.4 3 3 1.3 3.2e+03 -3.0 0.1 39 61 249 271 241 297 0.62 Pyridoxal phosphate biosynthesis protein PdxJ BtpA PF03437.15 254 CP023447_00092 - 308 0.056 12.9 0.0 1 1 3.5e-05 0.091 12.2 0.0 185 228 176 221 148 244 0.88 BtpA family EAP30 PF04157.16 236 CP023447_00092 - 308 0.13 11.5 0.0 1 1 9.2e-05 0.23 10.7 0.0 31 78 112 166 104 185 0.83 EAP30/Vps36 family HTH_48 PF17906.1 50 CP023447_00092 - 308 0.18 12.0 0.5 1 4 2.6 6.6e+03 -2.7 0.0 21 36 31 46 23 48 0.74 HTH domain in Mos1 transposase HTH_48 PF17906.1 50 CP023447_00092 - 308 0.18 12.0 0.5 2 4 0.29 7.4e+02 0.4 0.0 23 36 152 165 144 173 0.86 HTH domain in Mos1 transposase HTH_48 PF17906.1 50 CP023447_00092 - 308 0.18 12.0 0.5 3 4 0.03 76 3.5 0.0 8 20 229 241 228 247 0.87 HTH domain in Mos1 transposase HTH_48 PF17906.1 50 CP023447_00092 - 308 0.18 12.0 0.5 4 4 0.061 1.6e+02 2.5 0.0 9 29 271 291 270 305 0.86 HTH domain in Mos1 transposase DUF910 PF06014.11 61 CP023447_00093 - 328 0.0037 17.3 2.3 1 2 0.00074 4.4 7.4 0.3 18 53 169 204 166 205 0.92 Bacterial protein of unknown function (DUF910) DUF910 PF06014.11 61 CP023447_00093 - 328 0.0037 17.3 2.3 2 2 0.00032 1.9 8.5 0.1 23 52 222 251 213 255 0.92 Bacterial protein of unknown function (DUF910) Utp13 PF08625.11 142 CP023447_00093 - 328 0.012 15.6 4.3 1 2 0.037 2.2e+02 1.7 0.3 6 68 84 144 79 154 0.68 Utp13 specific WD40 associated domain Utp13 PF08625.11 142 CP023447_00093 - 328 0.012 15.6 4.3 2 2 2.7e-06 0.016 15.1 0.4 5 43 239 283 237 326 0.78 Utp13 specific WD40 associated domain DUF325 PF03804.13 73 CP023447_00093 - 328 0.076 13.0 0.1 1 1 3.5e-05 0.21 11.6 0.1 14 37 118 141 108 156 0.81 Viral proteins of unknown function zf-dskA_traR PF01258.17 36 CP023447_00094 - 120 1.3e-11 44.2 2.3 1 1 3.5e-15 2.1e-11 43.6 2.3 1 36 79 114 79 114 0.96 Prokaryotic dksA/traR C4-type zinc finger Fib_alpha PF08702.10 143 CP023447_00094 - 120 0.1 12.8 3.6 1 2 0.00013 0.77 9.9 0.8 76 123 3 50 1 57 0.88 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 CP023447_00094 - 120 0.1 12.8 3.6 2 2 0.0084 50 4.1 0.1 30 57 59 86 54 114 0.77 Fibrinogen alpha/beta chain family DUF1289 PF06945.13 48 CP023447_00094 - 120 0.11 12.3 4.4 1 3 0.00013 0.75 9.6 0.1 23 45 3 25 1 28 0.91 Protein of unknown function (DUF1289) DUF1289 PF06945.13 48 CP023447_00094 - 120 0.11 12.3 4.4 2 3 0.25 1.5e+03 -0.9 0.2 14 19 82 87 78 92 0.79 Protein of unknown function (DUF1289) DUF1289 PF06945.13 48 CP023447_00094 - 120 0.11 12.3 4.4 3 3 0.011 67 3.4 0.1 9 21 98 110 97 117 0.78 Protein of unknown function (DUF1289) SPOUT_MTase PF02590.17 154 CP023447_00095 - 149 7.4e-40 136.4 0.5 1 1 9.2e-44 8.3e-40 136.3 0.5 1 154 1 148 1 148 0.85 Predicted SPOUT methyltransferase BBP1_C PF15272.6 192 CP023447_00095 - 149 0.001 19.0 1.1 1 1 1.8e-07 0.0016 18.3 1.1 55 95 10 52 2 61 0.86 Spindle pole body component BBP1, C-terminal Carboxyl_trans PF01039.22 494 CP023447_00096 - 280 1.4e-21 76.8 0.2 1 1 5.3e-25 3.2e-21 75.5 0.2 12 179 59 238 54 249 0.85 Carboxyl transferase domain zf-ACC PF17848.1 26 CP023447_00096 - 280 1.1e-07 31.7 9.0 1 1 3.2e-11 1.9e-07 31.0 9.0 1 26 24 49 24 49 1.00 Acetyl-coA carboxylase zinc finger domain RNA_POL_M_15KD PF02150.16 36 CP023447_00096 - 280 0.071 13.0 1.7 1 1 7.5e-05 0.45 10.4 1.8 4 31 27 53 27 58 0.86 RNA polymerases M/15 Kd subunit Inositol_P PF00459.25 272 CP023447_00097 - 240 1.3e-14 54.4 0.0 1 1 2.1e-18 1.9e-14 53.9 0.0 66 228 60 208 40 211 0.83 Inositol monophosphatase family FBPase PF00316.20 189 CP023447_00097 - 240 0.015 14.8 0.0 1 1 2.8e-06 0.025 14.1 0.0 61 136 40 108 27 120 0.74 Fructose-1-6-bisphosphatase, N-terminal domain Bac_surface_Ag PF01103.23 324 CP023447_00098 - 739 4.4e-68 230.2 10.5 1 1 2e-71 7.3e-68 229.4 10.5 1 324 442 739 442 739 0.94 Surface antigen POTRA PF07244.15 80 CP023447_00098 - 739 2e-39 134.0 36.8 1 6 1.1e-08 3.9e-05 24.1 0.7 2 79 19 84 18 85 0.90 Surface antigen variable number repeat POTRA PF07244.15 80 CP023447_00098 - 739 2e-39 134.0 36.8 2 6 5.2e-11 1.9e-07 31.6 1.0 1 78 86 162 86 164 0.79 Surface antigen variable number repeat POTRA PF07244.15 80 CP023447_00098 - 739 2e-39 134.0 36.8 3 6 1.2e-09 4.4e-06 27.2 0.1 2 80 168 257 167 257 0.86 Surface antigen variable number repeat POTRA PF07244.15 80 CP023447_00098 - 739 2e-39 134.0 36.8 4 6 5.8e-09 2.1e-05 25.0 1.8 1 77 260 337 260 339 0.84 Surface antigen variable number repeat POTRA PF07244.15 80 CP023447_00098 - 739 2e-39 134.0 36.8 5 6 2.2e-16 8e-13 48.8 3.4 1 79 343 414 343 415 0.95 Surface antigen variable number repeat POTRA PF07244.15 80 CP023447_00098 - 739 2e-39 134.0 36.8 6 6 4 1.4e+04 -3.3 0.2 46 77 492 520 491 522 0.62 Surface antigen variable number repeat POTRA_2 PF08479.11 76 CP023447_00098 - 739 9e-06 25.4 2.6 1 5 0.031 1.1e+02 2.7 0.1 2 43 19 60 18 68 0.90 POTRA domain, ShlB-type POTRA_2 PF08479.11 76 CP023447_00098 - 739 9e-06 25.4 2.6 2 5 0.00017 0.61 10.0 0.1 2 66 87 151 87 158 0.93 POTRA domain, ShlB-type POTRA_2 PF08479.11 76 CP023447_00098 - 739 9e-06 25.4 2.6 3 5 0.11 3.8e+02 1.0 0.0 2 23 168 189 167 198 0.85 POTRA domain, ShlB-type POTRA_2 PF08479.11 76 CP023447_00098 - 739 9e-06 25.4 2.6 4 5 0.06 2.2e+02 1.8 0.0 32 56 209 233 203 238 0.80 POTRA domain, ShlB-type POTRA_2 PF08479.11 76 CP023447_00098 - 739 9e-06 25.4 2.6 5 5 0.009 32 4.4 0.0 12 62 270 323 260 339 0.71 POTRA domain, ShlB-type POTRA_1 PF08478.10 69 CP023447_00098 - 739 3.7e-05 23.9 4.5 1 4 0.019 69 3.8 0.1 2 31 19 48 18 72 0.86 POTRA domain, FtsQ-type POTRA_1 PF08478.10 69 CP023447_00098 - 739 3.7e-05 23.9 4.5 2 4 0.00099 3.5 8.0 0.1 3 46 88 131 87 137 0.91 POTRA domain, FtsQ-type POTRA_1 PF08478.10 69 CP023447_00098 - 739 3.7e-05 23.9 4.5 3 4 1 3.6e+03 -1.7 0.0 3 23 169 189 169 198 0.79 POTRA domain, FtsQ-type POTRA_1 PF08478.10 69 CP023447_00098 - 739 3.7e-05 23.9 4.5 4 4 0.00016 0.59 10.5 0.1 3 55 345 397 343 409 0.91 POTRA domain, FtsQ-type ShlB PF03865.13 312 CP023447_00098 - 739 0.00035 20.1 1.4 1 2 0.6 2.1e+03 -2.2 0.0 128 164 376 412 347 435 0.73 Haemolysin secretion/activation protein ShlB/FhaC/HecB ShlB PF03865.13 312 CP023447_00098 - 739 0.00035 20.1 1.4 2 2 1.6e-07 0.00057 19.4 0.2 199 299 587 693 557 705 0.71 Haemolysin secretion/activation protein ShlB/FhaC/HecB PDH PF02153.17 258 CP023447_00099 - 275 2.6e-69 233.1 0.2 1 1 1.3e-72 2.9e-69 233.0 0.2 2 258 16 267 15 267 0.97 Prephenate dehydrogenase F420_oxidored PF03807.17 97 CP023447_00099 - 275 0.00016 22.2 0.2 1 2 2.8e-07 0.00063 20.3 0.0 1 93 2 89 2 92 0.76 NADP oxidoreductase coenzyme F420-dependent F420_oxidored PF03807.17 97 CP023447_00099 - 275 0.00016 22.2 0.2 2 2 1.7 3.7e+03 -1.4 0.0 35 67 148 178 140 203 0.55 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 158 CP023447_00099 - 275 0.00044 20.5 0.0 1 1 3.4e-07 0.00076 19.7 0.0 1 106 2 107 2 128 0.69 NAD binding domain of 6-phosphogluconate dehydrogenase IPT PF01745.16 233 CP023447_00099 - 275 0.03 13.7 0.2 1 1 2.2e-05 0.05 13.0 0.2 80 148 189 258 182 273 0.82 Isopentenyl transferase FNIP PF05725.12 44 CP023447_00099 - 275 0.048 13.8 0.6 1 1 5.1e-05 0.11 12.6 0.6 9 37 80 106 76 108 0.78 FNIP Repeat IlvN PF07991.12 165 CP023447_00099 - 275 0.072 12.7 0.0 1 2 0.00016 0.36 10.4 0.0 6 75 2 73 1 83 0.78 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvN PF07991.12 165 CP023447_00099 - 275 0.072 12.7 0.0 2 2 0.34 7.6e+02 -0.4 0.0 77 108 139 172 131 179 0.76 Acetohydroxy acid isomeroreductase, NADPH-binding domain DUF4411 PF14367.6 162 CP023447_00099 - 275 0.13 12.2 0.9 1 2 1.9 4.3e+03 -2.5 0.0 37 84 137 183 128 198 0.57 Domain of unknown function (DUF4411) DUF4411 PF14367.6 162 CP023447_00099 - 275 0.13 12.2 0.9 2 2 9.4e-05 0.21 11.5 0.3 20 63 219 270 214 274 0.92 Domain of unknown function (DUF4411) Semialdhyde_dh PF01118.24 121 CP023447_00099 - 275 0.15 12.5 0.2 1 2 0.00021 0.46 10.9 0.1 1 101 2 95 2 140 0.77 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 121 CP023447_00099 - 275 0.15 12.5 0.2 2 2 1.3 2.8e+03 -1.3 0.0 67 72 161 166 107 204 0.60 Semialdehyde dehydrogenase, NAD binding domain Peptidase_M23 PF01551.22 96 CP023447_00100 - 457 1.3e-17 63.7 2.8 1 3 1.2 7.5e+03 -2.8 0.0 30 50 60 80 53 88 0.66 Peptidase family M23 Peptidase_M23 PF01551.22 96 CP023447_00100 - 457 1.3e-17 63.7 2.8 2 3 0.31 1.8e+03 -0.8 0.0 30 66 156 193 144 201 0.71 Peptidase family M23 Peptidase_M23 PF01551.22 96 CP023447_00100 - 457 1.3e-17 63.7 2.8 3 3 2.9e-21 1.7e-17 63.4 0.3 2 94 335 427 334 429 0.95 Peptidase family M23 Sigma_reg_N PF13800.6 90 CP023447_00100 - 457 0.089 13.1 0.9 1 2 0.00013 0.78 10.1 0.7 5 34 2 31 1 37 0.86 Sigma factor regulator N-terminal Sigma_reg_N PF13800.6 90 CP023447_00100 - 457 0.089 13.1 0.9 2 2 0.18 1.1e+03 -0.0 0.0 42 68 127 153 124 165 0.86 Sigma factor regulator N-terminal Big_3_2 PF12245.8 123 CP023447_00100 - 457 0.15 12.3 0.7 1 2 0.045 2.7e+02 1.8 0.1 41 61 56 76 47 88 0.85 Bacterial Ig-like domain Big_3_2 PF12245.8 123 CP023447_00100 - 457 0.15 12.3 0.7 2 2 0.00059 3.5 7.9 0.1 93 113 202 223 126 231 0.82 Bacterial Ig-like domain LpxC PF03331.13 270 CP023447_00101 - 294 2.8e-101 338.6 0.0 1 1 1.8e-105 3.2e-101 338.4 0.0 1 269 3 270 3 271 0.99 UDP-3-O-acyl N-acetylglycosamine deacetylase Peptidase_M22 PF00814.25 271 CP023447_00102 - 133 0.00024 20.9 0.0 1 1 1.7e-08 0.0003 20.6 0.0 30 97 21 83 14 93 0.82 Glycoprotease family GHMP_kinases_N PF00288.26 66 CP023447_00103 - 292 7.8e-10 38.9 0.0 1 2 2.9e-13 2.6e-09 37.2 0.0 3 66 78 137 76 137 0.79 GHMP kinases N terminal domain GHMP_kinases_N PF00288.26 66 CP023447_00103 - 292 7.8e-10 38.9 0.0 2 2 1 9.2e+03 -3.0 0.0 41 60 170 188 151 191 0.56 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 85 CP023447_00103 - 292 0.00048 20.4 0.0 1 2 0.64 5.7e+03 -2.2 0.0 58 79 135 155 133 159 0.77 GHMP kinases C terminal GHMP_kinases_C PF08544.13 85 CP023447_00103 - 292 0.00048 20.4 0.0 2 2 2e-07 0.0018 18.6 0.0 30 84 224 275 211 276 0.84 GHMP kinases C terminal zf-FPG_IleRS PF06827.14 30 CP023447_00104 - 65 0.045 13.6 0.1 1 1 4.4e-06 0.079 12.8 0.1 16 29 17 30 11 31 0.83 Zinc finger found in FPG and IleRS IF-2 PF11987.8 105 CP023447_00105 - 861 3.2e-37 126.8 1.1 1 2 5.1 8.3e+03 -3.0 0.2 50 71 445 467 424 480 0.65 Translation-initiation factor 2 IF-2 PF11987.8 105 CP023447_00105 - 861 3.2e-37 126.8 1.1 2 2 2e-40 3.2e-37 126.8 1.1 3 105 647 751 645 751 0.94 Translation-initiation factor 2 GTP_EFTU PF00009.27 194 CP023447_00105 - 861 1.7e-33 115.8 2.5 1 2 3.8 6.2e+03 -3.5 0.4 40 64 152 176 128 200 0.54 Elongation factor Tu GTP binding domain GTP_EFTU PF00009.27 194 CP023447_00105 - 861 1.7e-33 115.8 2.5 2 2 1e-36 1.7e-33 115.8 2.5 5 189 364 520 360 524 0.90 Elongation factor Tu GTP binding domain IF2_N PF04760.15 54 CP023447_00105 - 861 6.6e-32 109.1 6.2 1 3 2e-18 3.2e-15 55.7 0.3 1 52 1 51 1 53 0.96 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP023447_00105 - 861 6.6e-32 109.1 6.2 2 3 3.2e-18 5.3e-15 55.0 0.5 2 54 283 333 282 333 0.97 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP023447_00105 - 861 6.6e-32 109.1 6.2 3 3 3 4.9e+03 -2.6 0.0 19 36 725 741 722 741 0.78 Translation initiation factor IF-2, N-terminal region MMR_HSR1 PF01926.23 114 CP023447_00105 - 861 1.6e-11 44.3 0.2 1 2 4.2 6.8e+03 -2.9 0.2 90 98 142 150 106 191 0.52 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 CP023447_00105 - 861 1.6e-11 44.3 0.2 2 2 9.6e-15 1.6e-11 44.3 0.2 2 114 365 470 364 470 0.88 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP023447_00105 - 861 1.2e-09 38.4 10.1 1 2 6.4e-05 0.1 13.0 1.8 1 66 550 608 550 613 0.88 Elongation factor Tu domain 2 GTP_EFTU_D2 PF03144.25 74 CP023447_00105 - 861 1.2e-09 38.4 10.1 2 2 1.1e-09 1.7e-06 28.3 1.4 1 72 782 848 782 850 0.91 Elongation factor Tu domain 2 Ras PF00071.22 162 CP023447_00105 - 861 1.5e-06 27.9 0.0 1 3 2 3.2e+03 -2.4 0.4 107 129 130 151 119 191 0.64 Ras family Ras PF00071.22 162 CP023447_00105 - 861 1.5e-06 27.9 0.0 2 3 9.3e-10 1.5e-06 27.9 0.0 3 157 366 520 364 524 0.78 Ras family Ras PF00071.22 162 CP023447_00105 - 861 1.5e-06 27.9 0.0 3 3 2 3.2e+03 -2.4 0.1 108 147 611 654 602 665 0.73 Ras family Arf PF00025.21 175 CP023447_00105 - 861 4.8e-06 26.1 1.7 1 3 4.3 7e+03 -3.7 0.1 118 138 130 151 116 172 0.58 ADP-ribosylation factor family Arf PF00025.21 175 CP023447_00105 - 861 4.8e-06 26.1 1.7 2 3 1.1e-08 1.8e-05 24.3 0.0 17 171 365 519 354 523 0.86 ADP-ribosylation factor family Arf PF00025.21 175 CP023447_00105 - 861 4.8e-06 26.1 1.7 3 3 0.33 5.4e+02 -0.1 0.1 109 169 601 661 589 666 0.84 ADP-ribosylation factor family FeoB_N PF02421.18 156 CP023447_00105 - 861 0.00017 21.2 0.2 1 1 5.9e-07 0.00096 18.7 0.2 3 153 365 516 363 519 0.71 Ferrous iron transport protein B RsgA_GTPase PF03193.16 167 CP023447_00105 - 861 0.00028 20.9 7.5 1 4 3.9 6.3e+03 -3.1 0.8 37 63 128 154 71 185 0.61 RsgA GTPase RsgA_GTPase PF03193.16 167 CP023447_00105 - 861 0.00028 20.9 7.5 2 4 0.0069 11 5.9 0.0 88 163 351 421 293 425 0.58 RsgA GTPase RsgA_GTPase PF03193.16 167 CP023447_00105 - 861 0.00028 20.9 7.5 3 4 1.4e-06 0.0023 17.8 0.0 10 96 426 518 419 527 0.78 RsgA GTPase RsgA_GTPase PF03193.16 167 CP023447_00105 - 861 0.00028 20.9 7.5 4 4 1 1.6e+03 -1.2 0.1 43 84 653 694 635 717 0.63 RsgA GTPase Roc PF08477.13 120 CP023447_00105 - 861 0.0016 18.6 0.0 1 1 2.7e-06 0.0044 17.2 0.0 2 120 365 473 364 473 0.72 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1_Xtn PF16897.5 106 CP023447_00105 - 861 0.056 13.5 1.6 1 3 1.3 2.2e+03 -1.3 0.1 33 49 278 294 253 348 0.57 C-terminal region of MMR_HSR1 domain MMR_HSR1_Xtn PF16897.5 106 CP023447_00105 - 861 0.056 13.5 1.6 2 3 0.00053 0.87 9.6 0.0 56 99 462 518 439 524 0.75 C-terminal region of MMR_HSR1 domain MMR_HSR1_Xtn PF16897.5 106 CP023447_00105 - 861 0.056 13.5 1.6 3 3 0.48 7.8e+02 0.1 0.1 60 100 612 652 609 656 0.86 C-terminal region of MMR_HSR1 domain RBFA PF02033.18 105 CP023447_00106 - 120 1.7e-13 50.9 0.0 1 1 3.2e-17 1.9e-13 50.7 0.0 2 105 8 110 7 110 0.91 Ribosome-binding factor A CAAP1 PF15335.6 63 CP023447_00106 - 120 0.027 15.0 0.5 1 2 0.32 1.9e+03 -0.5 0.0 30 43 1 14 1 16 0.71 Caspase activity and apoptosis inhibitor 1 CAAP1 PF15335.6 63 CP023447_00106 - 120 0.027 15.0 0.5 2 2 2.1e-05 0.13 12.9 0.3 24 52 12 40 8 43 0.89 Caspase activity and apoptosis inhibitor 1 PRANC PF09372.10 97 CP023447_00106 - 120 0.079 13.3 0.5 1 2 0.072 4.3e+02 1.3 0.1 83 96 22 35 12 36 0.84 PRANC domain PRANC PF09372.10 97 CP023447_00106 - 120 0.079 13.3 0.5 2 2 0.00015 0.89 9.9 0.0 36 77 50 91 37 92 0.86 PRANC domain DUF150 PF02576.17 73 CP023447_00107 - 140 3.4e-25 88.2 0.4 1 2 3.7e-28 1.7e-24 86.0 0.1 2 73 3 74 2 74 0.98 RimP N-terminal domain DUF150 PF02576.17 73 CP023447_00107 - 140 3.4e-25 88.2 0.4 2 2 0.19 8.3e+02 0.5 0.1 12 43 89 119 79 127 0.65 RimP N-terminal domain DUF150_C PF17384.2 70 CP023447_00107 - 140 2.4e-18 66.0 2.9 1 1 7.7e-22 3.5e-18 65.5 2.9 1 70 77 140 77 140 0.95 RimP C-terminal SH3 domain LolA_like PF17131.4 183 CP023447_00107 - 140 0.02 14.6 0.6 1 1 7.5e-06 0.034 13.9 0.6 116 166 79 132 75 138 0.83 Outer membrane lipoprotein-sorting protein LSM14 PF12701.7 75 CP023447_00107 - 140 0.036 14.2 0.1 1 1 1.3e-05 0.058 13.5 0.1 2 36 86 118 85 136 0.90 Scd6-like Sm domain AAA_5 PF07728.14 138 CP023447_00108 - 773 3.8e-12 46.4 0.0 1 2 0.015 45 4.0 0.0 3 14 328 339 326 393 0.82 AAA domain (dynein-related subfamily) AAA_5 PF07728.14 138 CP023447_00108 - 773 3.8e-12 46.4 0.0 2 2 2e-13 5.9e-10 39.3 0.0 59 138 558 642 538 642 0.82 AAA domain (dynein-related subfamily) AAA PF00004.29 132 CP023447_00108 - 773 3e-05 24.4 0.0 1 2 0.00077 2.3 8.7 0.0 2 13 328 339 327 386 0.82 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP023447_00108 - 773 3e-05 24.4 0.0 2 2 3.6e-05 0.11 13.0 0.1 41 127 547 645 503 650 0.82 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 146 CP023447_00108 - 773 0.049 14.0 0.1 1 1 0.00024 0.71 10.2 0.1 14 47 328 357 317 596 0.55 AAA domain CHASE5 PF17149.4 108 CP023447_00108 - 773 0.076 12.9 0.7 1 2 0.00064 1.9 8.4 0.1 28 52 1 25 1 46 0.83 Periplasmic sensor domain found in signal transduction proteins CHASE5 PF17149.4 108 CP023447_00108 - 773 0.076 12.9 0.7 2 2 0.088 2.6e+02 1.5 0.1 6 43 234 271 230 317 0.80 Periplasmic sensor domain found in signal transduction proteins DUF2330 PF10092.9 309 CP023447_00108 - 773 0.3 10.1 1.7 1 1 0.00022 0.65 9.0 1.1 206 271 173 246 166 261 0.80 Uncharacterized protein conserved in bacteria (DUF2330) AAA_11 PF13086.6 261 CP023447_00108 - 773 4.5 7.0 5.3 1 3 0.52 1.6e+03 -1.4 1.5 89 122 154 212 99 287 0.41 AAA domain AAA_11 PF13086.6 261 CP023447_00108 - 773 4.5 7.0 5.3 2 3 0.0031 9.3 5.9 0.1 20 41 327 349 304 364 0.73 AAA domain AAA_11 PF13086.6 261 CP023447_00108 - 773 4.5 7.0 5.3 3 3 0.058 1.7e+02 1.8 0.0 176 206 357 387 344 394 0.76 AAA domain McrBC PF10117.9 320 CP023447_00109 - 445 1.9e-108 362.4 13.0 1 1 1.3e-112 2.4e-108 362.1 13.0 1 320 54 399 54 399 0.96 McrBC 5-methylcytosine restriction system component ABC-3 PF00950.17 258 CP023447_00110 - 267 6.2e-72 242.2 35.7 1 1 7.8e-76 7e-72 242.0 35.7 2 256 7 261 6 263 0.99 ABC 3 transport family FecCD PF01032.18 312 CP023447_00110 - 267 4.2e-10 39.1 35.4 1 1 8.3e-14 7.4e-10 38.3 35.4 67 291 32 245 7 263 0.79 FecCD transport family ABC_tran PF00005.27 137 CP023447_00111 - 284 1.3e-28 100.2 0.1 1 2 4e-31 3.5e-28 98.8 0.0 1 137 19 159 19 159 0.92 ABC transporter ABC_tran PF00005.27 137 CP023447_00111 - 284 1.3e-28 100.2 0.1 2 2 3.3 2.9e+03 -1.3 0.0 24 28 218 222 169 273 0.58 ABC transporter AAA_21 PF13304.6 303 CP023447_00111 - 284 3.4e-09 37.0 0.7 1 2 3.1e-07 0.00028 20.8 0.1 3 29 33 58 31 82 0.74 AAA domain, putative AbiEii toxin, Type IV TA system AAA_21 PF13304.6 303 CP023447_00111 - 284 3.4e-09 37.0 0.7 2 2 2.4e-05 0.021 14.6 0.0 234 301 128 192 125 195 0.92 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 220 CP023447_00111 - 284 4.9e-07 29.4 1.0 1 2 2.2e-06 0.002 17.6 0.0 24 62 29 67 17 86 0.80 RecF/RecN/SMC N terminal domain SMC_N PF02463.19 220 CP023447_00111 - 284 4.9e-07 29.4 1.0 2 2 0.0004 0.36 10.2 0.1 134 202 128 193 104 208 0.78 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 61 CP023447_00111 - 284 0.00018 21.2 0.0 1 1 3.8e-07 0.00034 20.3 0.0 16 54 23 61 12 64 0.82 P-loop containing region of AAA domain AAA_22 PF13401.6 137 CP023447_00111 - 284 0.00034 20.9 0.1 1 1 1.5e-06 0.0014 18.9 0.1 4 127 28 185 25 204 0.56 AAA domain ATPase_2 PF01637.18 233 CP023447_00111 - 284 0.00057 19.9 1.5 1 1 6.3e-06 0.0057 16.6 1.5 17 83 26 142 14 223 0.57 ATPase domain predominantly from Archaea AAA_15 PF13175.6 369 CP023447_00111 - 284 0.0027 17.5 14.7 1 1 9e-06 0.0081 15.9 14.7 15 167 20 274 15 282 0.75 AAA ATPase domain AAA_27 PF13514.6 207 CP023447_00111 - 284 0.0049 16.5 0.0 1 1 1.1e-05 0.0098 15.5 0.0 18 50 21 53 15 59 0.89 AAA domain SbcCD_C PF13558.6 90 CP023447_00111 - 284 0.0056 16.9 0.1 1 1 0.00014 0.13 12.6 0.1 21 88 119 173 102 175 0.75 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 CP023447_00111 - 284 0.011 15.5 0.0 1 1 0.00011 0.099 12.3 0.0 19 121 30 185 22 189 0.57 AAA domain AAA_23 PF13476.6 200 CP023447_00111 - 284 0.013 16.0 6.6 1 1 8.5e-05 0.076 13.5 6.6 14 40 21 50 5 283 0.90 AAA domain RsgA_GTPase PF03193.16 167 CP023447_00111 - 284 0.027 14.4 0.0 1 1 7.8e-05 0.07 13.0 0.0 98 123 27 53 6 70 0.77 RsgA GTPase AAA_16 PF13191.6 170 CP023447_00111 - 284 0.027 14.8 0.0 1 1 4.8e-05 0.043 14.2 0.0 27 57 32 65 23 176 0.84 AAA ATPase domain AAA PF00004.29 132 CP023447_00111 - 284 0.033 14.6 0.3 1 1 0.00014 0.13 12.7 0.3 3 26 34 86 32 187 0.65 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 168 CP023447_00111 - 284 0.043 13.7 0.0 1 1 0.0001 0.093 12.6 0.0 4 27 34 57 31 62 0.91 NTPase AAA_14 PF13173.6 131 CP023447_00111 - 284 0.044 13.8 0.2 1 1 0.00023 0.2 11.7 0.1 3 43 30 69 28 232 0.86 AAA domain IstB_IS21 PF01695.17 178 CP023447_00111 - 284 0.062 13.0 0.0 1 2 0.012 11 5.7 0.0 45 64 27 46 11 64 0.84 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP023447_00111 - 284 0.062 13.0 0.0 2 2 0.019 17 5.1 0.0 107 141 147 180 126 190 0.80 IstB-like ATP binding protein NACHT PF05729.12 166 CP023447_00111 - 284 0.084 12.8 0.1 1 2 0.00031 0.28 11.1 0.0 3 31 32 60 30 94 0.80 NACHT domain NACHT PF05729.12 166 CP023447_00111 - 284 0.084 12.8 0.1 2 2 2.2 2e+03 -1.4 0.0 86 115 153 179 128 192 0.59 NACHT domain MMR_HSR1 PF01926.23 114 CP023447_00111 - 284 0.12 12.5 0.1 1 2 0.00033 0.3 11.2 0.0 3 29 33 59 31 120 0.79 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 CP023447_00111 - 284 0.12 12.5 0.1 2 2 6.7 6e+03 -2.7 0.0 79 96 184 206 150 224 0.57 50S ribosome-binding GTPase AAA_33 PF13671.6 143 CP023447_00111 - 284 0.15 12.2 0.1 1 2 0.00061 0.54 10.4 0.0 4 20 34 50 32 168 0.81 AAA domain AAA_33 PF13671.6 143 CP023447_00111 - 284 0.15 12.2 0.1 2 2 5.1 4.6e+03 -2.3 0.0 96 109 234 247 198 266 0.60 AAA domain ZnuA PF01297.17 256 CP023447_00112 - 296 1.5e-55 188.4 3.1 1 1 2e-59 1.8e-55 188.1 3.1 1 229 34 276 34 291 0.86 Zinc-uptake complex component A periplasmic NMT1_3 PF16868.5 289 CP023447_00112 - 296 0.12 11.8 0.0 1 1 2.1e-05 0.19 11.1 0.0 148 190 233 275 191 292 0.90 NMT1-like family W2 PF02020.18 79 CP023544_00001 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 CP023544_00001 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 CP023544_00001 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 CP023544_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 CP023544_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 CP023544_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP023544_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 CP023544_00003 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CP023544_00003 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 CP023544_00004 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 CP023544_00004 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP023544_00004 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 CP023544_00004 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 CP023544_00004 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 CP023544_00004 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 CP023544_00004 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP023544_00004 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP023544_00004 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 CP023544_00005 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP023544_00005 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP023544_00005 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP023544_00005 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP023544_00005 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP023544_00005 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 CP023544_00006 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP023544_00006 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 CP023544_00007 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP023544_00007 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP023544_00007 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP023544_00007 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP023544_00007 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP023544_00007 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 CP023544_00008 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 CP023544_00008 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal SNF2_N PF00176.23 350 CP023544_00009 - 1931 3.7e-16 58.8 2.9 1 3 1.3e-19 4.5e-16 58.5 0.1 57 245 1017 1272 935 1313 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP023544_00009 - 1931 3.7e-16 58.8 2.9 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP023544_00009 - 1931 3.7e-16 58.8 2.9 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1875 1923 1845 1924 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 CP023544_00009 - 1931 7.5e-08 32.6 8.9 1 2 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP023544_00009 - 1931 7.5e-08 32.6 8.9 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1798 1909 1724 1931 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP023544_00009 - 1931 9.7e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP023544_00009 - 1931 9.7e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP023544_00009 - 1931 9.5e-06 25.5 2.0 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 CP023544_00009 - 1931 9.5e-06 25.5 2.0 2 2 0.12 4.2e+02 0.6 0.0 119 150 1882 1915 1827 1930 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP023544_00009 - 1931 2.5e-05 24.7 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP023544_00009 - 1931 2.5e-05 24.7 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 CP023544_00010 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 CP023544_00010 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 CP023544_00010 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 CP023544_00010 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) Acetyltransf_7 PF13508.7 76 CP023544_00011 - 166 0.00015 22.1 0.0 1 1 1e-07 0.00031 21.1 0.0 29 75 12 75 2 76 0.60 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 CP023544_00011 - 166 0.003 17.8 0.0 1 1 2.5e-06 0.0073 16.5 0.0 65 92 14 41 6 74 0.80 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 CP023544_00011 - 166 0.0052 16.8 0.3 1 1 2.7e-06 0.0082 16.2 0.3 24 67 103 146 86 150 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PHM7_cyt PF14703.6 176 CP023544_00011 - 166 0.095 12.9 0.2 1 1 5.2e-05 0.15 12.2 0.2 30 85 98 153 86 159 0.81 Cytosolic domain of 10TM putative phosphate transporter Acetyltransf_10 PF13673.7 127 CP023544_00011 - 166 0.12 12.4 0.0 1 1 0.00011 0.33 10.9 0.0 55 84 13 42 4 84 0.79 Acetyltransferase (GNAT) domain Spc24 PF08286.11 105 CP023544_00011 - 166 0.39 11.0 3.2 1 2 0.00045 1.3 9.3 0.2 54 89 63 108 31 115 0.67 Spc24 subunit of Ndc80 Spc24 PF08286.11 105 CP023544_00011 - 166 0.39 11.0 3.2 2 2 0.04 1.2e+02 3.0 0.7 12 43 111 142 101 152 0.69 Spc24 subunit of Ndc80 DUF3913 PF13052.6 57 CP023544_00012 - 82 0.046 14.0 0.3 1 1 4.2e-06 0.076 13.3 0.2 29 53 35 58 28 62 0.76 Protein of unknown function (DUF3913) Relaxase PF03432.14 242 CP023544_00013 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP023544_00013 - 462 4.7e-10 39.5 7.4 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 CP023544_00014 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP023544_00014 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP023544_00014 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP023544_00014 - 183 0.046 13.8 2.1 1 1 1.7e-05 0.063 13.4 1.5 55 131 19 103 9 124 0.70 Stage III sporulation protein AB (spore_III_AB) NLRC4_HD PF17889.1 107 CP023544_00014 - 183 0.18 12.1 5.5 1 2 0.00027 0.98 9.8 1.8 14 92 6 84 3 98 0.81 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP023544_00014 - 183 0.18 12.1 5.5 2 2 0.016 56 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 CP023544_00014 - 183 0.41 10.7 8.1 1 3 0.32 1.1e+03 -0.3 0.1 40 55 12 27 4 54 0.75 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP023544_00014 - 183 0.41 10.7 8.1 2 3 0.011 39 4.4 0.6 11 46 56 91 51 97 0.87 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP023544_00014 - 183 0.41 10.7 8.1 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 CP023544_00014 - 183 0.42 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP023544_00014 - 183 0.42 10.9 6.2 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE TcdA_TcdB PF12919.7 407 CP023544_00015 - 93 0.00084 18.7 3.1 1 1 2.1e-07 0.00093 18.6 3.1 272 348 8 80 2 92 0.84 TcdA/TcdB catalytic glycosyltransferase domain Bcl-2 PF00452.19 99 CP023544_00015 - 93 0.16 12.6 0.3 1 2 0.00017 0.77 10.5 0.1 3 47 6 48 5 49 0.87 Apoptosis regulator proteins, Bcl-2 family Bcl-2 PF00452.19 99 CP023544_00015 - 93 0.16 12.6 0.3 2 2 0.1 4.6e+02 1.6 0.0 7 31 46 69 45 81 0.73 Apoptosis regulator proteins, Bcl-2 family ESP PF16590.5 91 CP023544_00015 - 93 0.55 10.5 4.8 1 2 0.017 75 3.7 1.1 26 72 3 52 2 57 0.60 Exocrine gland-secreting peptide ESP PF16590.5 91 CP023544_00015 - 93 0.55 10.5 4.8 2 2 6e-05 0.27 11.5 0.5 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF3671 PF12420.8 115 CP023544_00015 - 93 6.5 6.9 13.7 1 2 0.042 1.9e+02 2.2 3.5 25 49 18 42 3 47 0.70 Protein of unknown function DUF3671 PF12420.8 115 CP023544_00015 - 93 6.5 6.9 13.7 2 2 9.4e-05 0.42 10.7 2.6 4 32 59 85 56 93 0.81 Protein of unknown function Toprim_3 PF13362.6 95 CP023544_00018 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 CP023544_00018 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 CP023544_00018 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 CP023544_00018 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP023544_00018 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 CP023544_00019 - 97 0.007 16.3 0.0 1 1 1.7e-06 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) nec1 PF10379.9 184 CP023544_00019 - 97 0.067 12.7 0.0 1 1 1.1e-05 0.099 12.1 0.0 65 105 56 94 35 96 0.75 Virulence protein nec1 Sdh_cyt PF01127.22 121 CP023544_00020 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 CP023544_00020 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 CP023544_00020 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 CP023544_00022 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 CP023544_00023 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 CP023544_00024 - 597 1.1e-14 54.5 0.0 1 1 1e-17 2.3e-14 53.4 0.0 30 193 30 175 19 176 0.85 AAA domain DnaB_C PF03796.15 255 CP023544_00024 - 597 0.00029 20.3 0.0 1 2 8.3e-07 0.0019 17.6 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP023544_00024 - 597 0.00029 20.3 0.0 2 2 0.012 27 4.0 0.0 121 183 112 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP023544_00024 - 597 0.0018 18.0 0.0 1 2 6.3e-06 0.014 15.1 0.0 46 87 32 73 21 96 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP023544_00024 - 597 0.0018 18.0 0.0 2 2 0.42 9.3e+02 -0.6 0.0 99 118 111 130 102 168 0.69 IstB-like ATP binding protein ATPase PF06745.13 231 CP023544_00024 - 597 0.0084 15.5 0.0 1 2 2.4e-05 0.053 12.9 0.0 16 70 30 83 24 167 0.92 KaiC ATPase PF06745.13 231 CP023544_00024 - 597 0.0084 15.5 0.0 2 2 0.72 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 CP023544_00024 - 597 0.014 15.8 0.2 1 2 0.00015 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP023544_00024 - 597 0.014 15.8 0.2 2 2 0.2 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 CP023544_00024 - 597 0.15 12.1 1.7 1 1 0.00034 0.77 9.8 1.7 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 CP023544_00024 - 597 0.38 10.7 3.0 1 3 0.0021 4.7 7.2 0.0 10 35 57 82 53 103 0.92 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP023544_00024 - 597 0.38 10.7 3.0 2 3 0.2 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP023544_00024 - 597 0.38 10.7 3.0 3 3 0.72 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) VASP_tetra PF08776.11 37 CP023544_00024 - 597 2.7 7.6 6.7 1 2 0.0021 4.7 6.9 0.1 16 36 97 117 94 118 0.91 VASP tetramerisation domain VASP_tetra PF08776.11 37 CP023544_00024 - 597 2.7 7.6 6.7 2 2 0.087 2e+02 1.7 2.6 16 28 517 529 511 530 0.91 VASP tetramerisation domain Resolvase PF00239.21 146 CP023544_00025 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP023544_00025 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 CP023544_00025 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 CP023544_00025 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 CP023544_00025 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP023544_00025 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 CP023544_00025 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain CRISPR_Cas2 PF09827.9 76 CP023544_00026 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP023544_00026 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 TrbC PF04956.13 99 CP023544_00028 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP023544_00028 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 CP023544_00029 - 922 3.1e-51 174.4 0.4 1 1 7.9e-55 7.1e-51 173.2 0.4 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP023544_00029 - 922 3.6e-21 75.2 0.8 1 1 6.9e-25 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein Phage_pRha PF09669.10 88 CP023544_00030 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 CP023544_00030 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 CP023544_00030 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) PBECR2 PF18810.1 119 CP023544_00031 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 SSB PF00436.25 104 CP023544_00032 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 CP023544_00033 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP023544_00033 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP023544_00033 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP023544_00033 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP023544_00033 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP023544_00033 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP023544_00033 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 CP023544_00034 - 329 1.7e-28 100.4 13.1 1 1 5.2e-32 2.3e-28 99.9 13.1 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 CP023544_00034 - 329 0.0035 17.5 0.5 1 2 0.27 1.2e+03 -0.3 0.0 30 54 134 158 120 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP023544_00034 - 329 0.0035 17.5 0.5 2 2 4.7e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 CP023544_00034 - 329 0.018 15.7 0.8 1 2 1.3 6e+03 -2.1 0.0 55 70 124 139 101 163 0.57 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP023544_00034 - 329 0.018 15.7 0.8 2 2 8.6e-06 0.039 14.6 0.2 31 84 208 270 197 295 0.83 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 CP023544_00034 - 329 0.48 11.1 11.5 1 2 0.042 1.9e+02 2.7 0.8 49 135 108 145 95 182 0.47 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP023544_00034 - 329 0.48 11.1 11.5 2 2 8.9e-05 0.4 11.4 4.6 49 117 225 307 205 328 0.69 Apoptosis antagonizing transcription factor TrbL PF04610.14 215 CP023544_00035 - 331 2.1e-30 106.1 33.3 1 2 4.7e-34 2.1e-30 106.1 33.3 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP023544_00035 - 331 2.1e-30 106.1 33.3 2 2 0.59 2.6e+03 -2.1 0.1 58 88 289 325 260 330 0.47 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP023544_00035 - 331 0.069 13.0 1.0 1 2 0.54 2.4e+03 -1.6 0.1 39 51 70 82 61 114 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP023544_00035 - 331 0.069 13.0 1.0 2 2 5e-05 0.23 11.3 0.1 37 81 243 287 222 298 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 CP023544_00035 - 331 0.17 11.9 0.0 1 1 6.8e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) AIM3 PF17096.5 88 CP023544_00035 - 331 0.3 12.1 6.0 1 1 0.00013 0.57 11.1 6.0 9 38 299 328 284 330 0.89 Altered inheritance of mitochondria protein 3 La_HTH_kDCL PF18177.1 90 CP023544_00036 - 54 0.2 12.0 0.0 1 1 1.2e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain VirB8 PF04335.13 214 CP023544_00037 - 219 1.6e-52 178.5 0.5 1 1 2e-56 1.8e-52 178.3 0.5 4 214 10 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 CP023544_00037 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 CP023544_00038 - 298 9.6e-56 188.8 1.9 1 1 8.4e-60 1.5e-55 188.2 1.9 2 211 32 273 31 273 0.92 Conjugal transfer protein TrbI PF03743.14 187 CP023544_00039 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.5e+03 -3.4 0.3 136 154 141 166 120 174 0.53 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 CP023544_00039 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP023544_00039 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease T2SSE PF00437.20 273 CP023544_00040 - 339 6.9e-55 186.0 0.0 1 1 1.4e-57 8.1e-55 185.8 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP023544_00040 - 339 7.2e-05 23.3 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP023544_00040 - 339 0.00012 21.6 0.0 1 1 3.2e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP023544_00040 - 339 0.00028 20.4 0.0 1 1 9.2e-07 0.00052 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP023544_00040 - 339 0.0014 18.9 0.0 1 1 4.7e-06 0.0026 18.0 0.0 5 56 160 221 155 244 0.72 AAA domain DEAD PF00270.29 176 CP023544_00040 - 339 0.0014 18.4 0.0 1 1 4.1e-06 0.0023 17.7 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 CP023544_00040 - 339 0.0026 17.5 0.2 1 1 9.7e-06 0.0054 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 CP023544_00040 - 339 0.0035 17.3 0.0 1 1 1.3e-05 0.0073 16.3 0.0 10 45 152 186 141 194 0.74 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP023544_00040 - 339 0.0055 15.7 0.0 1 1 1.4e-05 0.0079 15.1 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 CP023544_00040 - 339 0.0073 16.2 0.0 1 1 2.3e-05 0.013 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP023544_00040 - 339 0.0088 15.4 0.0 1 1 2.6e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP023544_00040 - 339 0.0091 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 305 0.85 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 CP023544_00040 - 339 0.018 15.1 0.0 1 1 6.4e-05 0.036 14.2 0.0 27 48 164 185 142 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 CP023544_00040 - 339 0.021 13.8 0.0 1 1 6.2e-05 0.035 13.0 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 CP023544_00040 - 339 0.023 14.7 0.0 1 1 9.6e-05 0.054 13.5 0.0 5 50 147 186 135 248 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 CP023544_00040 - 339 0.024 14.4 0.0 1 1 9.2e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 CP023544_00040 - 339 0.026 14.2 0.0 1 1 9.8e-05 0.055 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 CP023544_00040 - 339 0.031 13.8 0.0 1 1 0.00011 0.061 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 CP023544_00040 - 339 0.035 14.2 0.1 1 1 0.00019 0.11 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 CP023544_00040 - 339 0.04 13.7 0.0 1 1 0.00011 0.064 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 CP023544_00040 - 339 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 CP023544_00040 - 339 0.046 13.0 0.0 1 1 0.00015 0.082 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin PRK PF00485.18 197 CP023544_00040 - 339 0.058 13.1 0.0 1 1 0.0002 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP023544_00040 - 339 0.065 11.9 0.0 1 1 0.00016 0.092 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP023544_00040 - 339 0.075 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 CP023544_00040 - 339 0.089 12.7 0.0 1 1 0.00036 0.2 11.5 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 CP023544_00040 - 339 0.089 12.7 0.4 1 1 0.00039 0.22 11.5 0.3 71 102 149 179 129 220 0.81 Microtubule binding NTPase_1 PF03266.15 168 CP023544_00040 - 339 0.11 12.4 0.1 1 1 0.00042 0.23 11.3 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 CP023544_00040 - 339 0.12 13.0 0.0 1 2 8.1 4.6e+03 -1.9 0.0 25 60 14 49 4 61 0.76 AAA domain AAA_18 PF13238.6 130 CP023544_00040 - 339 0.12 13.0 0.0 2 2 0.0007 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 CP023544_00040 - 339 0.15 11.7 0.0 1 1 0.00043 0.24 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP023544_00040 - 339 0.15 11.7 0.0 1 1 0.00044 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 CP023544_00040 - 339 0.38 11.2 4.1 1 2 2.7 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 CP023544_00040 - 339 0.38 11.2 4.1 2 2 0.00068 0.38 11.2 1.3 22 37 163 178 160 184 0.87 AAA domain Carbam_trans_N PF02543.15 338 CP023544_00041 - 267 0.053 13.2 0.0 1 1 4.1e-06 0.073 12.7 0.0 195 313 117 236 74 243 0.86 Carbamoyltransferase N-terminus T4SS-DNA_transf PF02534.14 469 CP023544_00042 - 603 8.3e-104 348.0 0.1 1 1 3.2e-107 1.1e-103 347.5 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP023544_00042 - 603 3.5e-24 85.2 0.0 1 1 1.9e-27 6.8e-24 84.3 0.0 2 125 406 528 405 529 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP023544_00042 - 603 3.2e-15 55.9 0.0 1 2 2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP023544_00042 - 603 3.2e-15 55.9 0.0 2 2 1.6e-13 5.8e-10 38.6 0.0 187 369 347 531 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 CP023544_00042 - 603 0.17 11.9 0.1 1 1 8.3e-05 0.3 11.2 0.1 37 93 9 87 3 100 0.78 Putative Actinobacterial Holin-X, holin superfamily III ECF_trnsprt PF12822.7 172 CP023544_00042 - 603 1.2 9.2 8.3 1 1 0.00056 2 8.5 8.3 101 168 4 79 1 81 0.85 ECF transporter, substrate-specific component Cag12 PF13117.6 97 CP023544_00043 - 143 1.4e-16 60.7 0.3 1 1 2.1e-20 1.9e-16 60.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 CP023544_00043 - 143 0.06 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 CP023544_00044 - 252 4.1e-38 130.8 2.0 1 1 2.9e-42 5.3e-38 130.4 2.0 1 154 25 190 25 192 0.88 TrbM PRELI PF04707.14 157 CP023544_00045 - 265 0.044 13.6 0.3 1 2 0.26 2.4e+03 -1.8 0.1 107 133 23 45 5 72 0.49 PRELI-like family PRELI PF04707.14 157 CP023544_00045 - 265 0.044 13.6 0.3 2 2 4.9e-06 0.044 13.6 0.3 96 155 83 147 78 149 0.87 PRELI-like family TACC_C PF05010.14 201 CP023544_00045 - 265 0.92 9.3 9.3 1 2 0.00027 2.4 7.9 8.2 14 124 2 111 1 135 0.79 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 CP023544_00045 - 265 0.92 9.3 9.3 2 2 0.035 3.2e+02 1.0 1.1 8 45 100 139 94 148 0.70 Transforming acidic coiled-coil-containing protein (TACC), C-terminal CdhD PF03599.16 386 CP023544_00046 - 246 0.002 16.9 0.0 1 1 5.3e-07 0.0031 16.3 0.0 269 358 39 127 30 136 0.86 CO dehydrogenase/acetyl-CoA synthase delta subunit Pox_RNA_pol PF03293.14 160 CP023544_00046 - 246 0.012 15.3 0.9 1 1 4.5e-06 0.027 14.2 0.9 35 158 20 138 7 140 0.83 Poxvirus DNA-directed RNA polymerase, 18 kD subunit Redoxin PF08534.10 147 CP023544_00046 - 246 0.059 13.1 0.5 1 2 0.079 4.7e+02 0.4 0.0 117 146 49 76 31 77 0.79 Redoxin Redoxin PF08534.10 147 CP023544_00046 - 246 0.059 13.1 0.5 2 2 7.9e-05 0.47 10.2 0.1 49 76 184 213 178 230 0.79 Redoxin DUF1461 PF07314.11 189 CP023544_00047 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) Topoisom_bac PF01131.20 413 CP023544_00048 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP023544_00048 - 730 6.3e-12 45.6 2.6 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP023544_00048 - 730 6.3e-12 45.6 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 CP023544_00048 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP023544_00048 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP023544_00048 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP023544_00048 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP023544_00048 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CP023544_00048 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP023544_00048 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CP023544_00048 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP023544_00048 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 CP023544_00048 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 CP023544_00048 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 CP023544_00048 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP023544_00048 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CP023544_00048 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP023544_00048 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 CP023544_00048 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 CP023544_00048 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP023544_00048 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 CP023544_00048 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP023544_00048 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP023544_00048 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 CP023544_00048 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 CP023544_00048 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 CP023544_00048 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP023544_00048 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 CP023544_00048 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 CP023544_00048 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 CP023544_00048 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 CP023544_00048 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 CP023544_00048 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 CP023544_00048 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 CP023544_00050 - 233 2.9e-05 24.0 2.2 1 2 0.42 3.8e+03 -2.3 0.0 56 65 49 58 14 83 0.63 PcfJ-like protein PcfJ PF14284.6 144 CP023544_00050 - 233 2.9e-05 24.0 2.2 2 2 3.2e-09 2.9e-05 24.0 2.2 3 133 90 216 88 226 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP023544_00050 - 233 0.0053 16.7 3.0 1 1 1.6e-06 0.015 15.3 3.0 37 126 71 205 10 215 0.75 Intein splicing domain APH PF01636.23 240 CP023544_00052 - 306 5.8e-22 78.8 0.0 1 1 2.1e-25 7.5e-22 78.4 0.0 13 230 39 256 27 265 0.75 Phosphotransferase enzyme family RIO1 PF01163.22 188 CP023544_00052 - 306 2.1e-06 27.5 0.1 1 2 0.00064 2.3 7.8 0.0 47 111 52 117 46 131 0.76 RIO1 family RIO1 PF01163.22 188 CP023544_00052 - 306 2.1e-06 27.5 0.1 2 2 5.8e-07 0.0021 17.7 0.1 97 154 165 223 149 253 0.81 RIO1 family DUF1679 PF07914.11 414 CP023544_00052 - 306 0.00034 19.6 0.1 1 2 1 3.7e+03 -3.6 0.0 113 142 60 89 55 92 0.78 Protein of unknown function (DUF1679) DUF1679 PF07914.11 414 CP023544_00052 - 306 0.00034 19.6 0.1 2 2 1.6e-07 0.00056 18.9 0.0 213 318 134 238 102 253 0.70 Protein of unknown function (DUF1679) Choline_kinase PF01633.20 213 CP023544_00052 - 306 0.00076 19.1 0.2 1 2 5.9e-07 0.0021 17.7 0.1 21 171 61 218 46 219 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 CP023544_00052 - 306 0.00076 19.1 0.2 2 2 0.51 1.8e+03 -1.7 0.0 6 25 249 268 247 271 0.89 Choline/ethanolamine kinase EcKinase PF02958.20 294 CP023544_00052 - 306 0.0095 15.3 0.1 1 1 3.7e-06 0.013 14.8 0.1 189 270 162 243 121 262 0.65 Ecdysteroid kinase GTP_EFTU PF00009.27 194 CP023544_00053 - 639 5.6e-59 198.9 0.3 1 1 3.9e-62 7.8e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP023544_00053 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP023544_00053 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP023544_00053 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP023544_00053 - 639 2.1e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP023544_00053 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP023544_00053 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP023544_00053 - 639 0.0091 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP023544_00053 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP023544_00053 - 639 0.05 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family CPSF_A PF03178.15 322 CP023544_00055 - 95 0.034 13.4 0.0 1 1 9.6e-06 0.034 13.4 0.0 248 286 57 94 23 95 0.80 CPSF A subunit region ATPase PF06745.13 231 CP023544_00055 - 95 0.048 13.0 0.2 1 1 1.4e-05 0.049 13.0 0.2 73 152 7 87 1 94 0.74 KaiC TipAS PF07739.13 117 CP023544_00055 - 95 0.061 13.9 1.5 1 1 0.00033 1.2 9.7 1.9 27 96 5 80 1 92 0.80 TipAS antibiotic-recognition domain 3HCDH PF00725.22 97 CP023544_00055 - 95 0.091 13.4 0.2 1 1 3.8e-05 0.14 12.8 0.2 7 65 36 93 33 95 0.91 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DUF4942 PF13708.6 199 CP023544_00055 - 95 0.15 12.0 0.0 1 1 7.1e-05 0.26 11.3 0.0 22 74 36 87 33 93 0.88 Domain of unknown function (DUF4942) PNP_UDP_1 PF01048.20 234 CP023544_00056 - 256 7.6e-29 100.6 0.0 1 1 4.8e-33 8.7e-29 100.4 0.0 3 219 34 237 32 255 0.86 Phosphorylase superfamily DUF4111 PF13427.6 103 CP023544_00057 - 218 3.1e-17 62.6 0.0 1 3 0.56 2.5e+03 -1.3 0.0 60 80 3 23 2 25 0.81 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 CP023544_00057 - 218 3.1e-17 62.6 0.0 2 3 1.5 6.8e+03 -2.7 0.0 8 22 52 66 50 72 0.73 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 CP023544_00057 - 218 3.1e-17 62.6 0.0 3 3 3.9e-20 1.8e-16 60.2 0.0 1 67 148 214 148 217 0.97 Domain of unknown function (DUF4111) Polbeta PF18765.1 93 CP023544_00057 - 218 8.7e-10 38.6 0.0 1 2 8.5e-13 3.8e-09 36.5 0.0 8 74 22 92 11 97 0.77 Polymerase beta, Nucleotidyltransferase Polbeta PF18765.1 93 CP023544_00057 - 218 8.7e-10 38.6 0.0 2 2 0.33 1.5e+03 -0.6 0.0 17 42 103 134 98 153 0.72 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 95 CP023544_00057 - 218 2.4e-06 27.8 0.0 1 1 1e-09 4.5e-06 26.9 0.0 14 76 25 89 11 107 0.76 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 199 CP023544_00057 - 218 0.00015 21.7 0.0 1 1 4.6e-08 0.00021 21.3 0.0 88 138 21 71 2 84 0.86 Adenylate cyclase NT domain DUF4111 PF13427.6 103 CP023544_00058 - 55 0.0023 18.0 0.0 1 1 1.5e-07 0.0027 17.9 0.0 69 103 13 47 7 47 0.95 Domain of unknown function (DUF4111) AAA_18 PF13238.6 130 CP023544_00059 - 181 5.7e-14 52.8 0.0 1 1 1.6e-16 7.6e-14 52.4 0.0 1 124 7 135 7 141 0.86 AAA domain CPT PF07931.12 174 CP023544_00059 - 181 3e-09 37.0 0.0 1 1 1.2e-11 5.8e-09 36.0 0.0 1 172 4 172 4 174 0.81 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 CP023544_00059 - 181 6.4e-09 36.1 0.0 1 1 1.9e-11 9.4e-09 35.6 0.0 2 136 7 144 6 146 0.81 AAA domain Zeta_toxin PF06414.12 199 CP023544_00059 - 181 1.5e-08 34.2 0.0 1 1 7.5e-11 3.6e-08 32.9 0.0 18 162 6 140 2 174 0.78 Zeta toxin AAA PF00004.29 132 CP023544_00059 - 181 8.7e-06 26.2 0.2 1 2 1.7e-07 8.1e-05 23.1 0.0 2 34 8 41 7 83 0.78 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP023544_00059 - 181 8.7e-06 26.2 0.2 2 2 0.71 3.5e+02 1.6 0.0 104 131 108 135 56 136 0.84 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 163 CP023544_00059 - 181 0.0001 22.6 0.1 1 2 8.3e-07 0.0004 20.7 0.0 2 62 7 71 6 85 0.62 AAA domain AAA_28 PF13521.6 163 CP023544_00059 - 181 0.0001 22.6 0.1 2 2 2.6 1.2e+03 -0.4 0.1 137 137 133 133 91 177 0.52 AAA domain AAA_17 PF13207.6 136 CP023544_00059 - 181 0.0002 21.8 0.0 1 1 7.1e-07 0.00035 21.0 0.0 1 128 10 131 10 139 0.78 AAA domain AAA_22 PF13401.6 137 CP023544_00059 - 181 0.00034 20.9 0.0 1 2 2e-06 0.00099 19.4 0.0 4 33 3 32 1 84 0.83 AAA domain AAA_22 PF13401.6 137 CP023544_00059 - 181 0.00034 20.9 0.0 2 2 3.7 1.8e+03 -0.9 0.0 62 83 121 141 96 178 0.64 AAA domain AAA_14 PF13173.6 131 CP023544_00059 - 181 0.00043 20.3 0.0 1 1 1.4e-06 0.00066 19.7 0.0 2 127 4 141 3 145 0.72 AAA domain RuvB_N PF05496.12 159 CP023544_00059 - 181 0.0016 18.2 0.1 1 2 1.2e-05 0.0057 16.4 0.0 36 60 7 31 3 49 0.85 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 CP023544_00059 - 181 0.0016 18.2 0.1 2 2 3.1 1.5e+03 -1.2 0.0 96 114 111 129 104 167 0.72 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 146 CP023544_00059 - 181 0.0024 18.2 0.0 1 1 8.6e-06 0.0042 17.4 0.0 9 35 3 29 1 77 0.87 AAA domain ABC_tran PF00005.27 137 CP023544_00059 - 181 0.0031 18.0 0.1 1 1 8.5e-06 0.0041 17.6 0.1 9 43 2 35 1 133 0.85 ABC transporter AAA_16 PF13191.6 170 CP023544_00059 - 181 0.0045 17.4 0.0 1 1 1.9e-05 0.0092 16.4 0.0 22 62 2 43 1 76 0.75 AAA ATPase domain KTI12 PF08433.10 272 CP023544_00059 - 181 0.0048 16.4 0.0 1 2 2e-05 0.0095 15.4 0.0 3 42 6 44 5 87 0.74 Chromatin associated protein KTI12 KTI12 PF08433.10 272 CP023544_00059 - 181 0.0048 16.4 0.0 2 2 4.5 2.2e+03 -2.2 0.0 263 263 137 137 104 174 0.57 Chromatin associated protein KTI12 DUF2075 PF09848.9 363 CP023544_00059 - 181 0.005 16.1 0.2 1 1 1.6e-05 0.0077 15.5 0.1 2 29 5 32 4 68 0.84 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.20 158 CP023544_00059 - 181 0.0076 16.2 0.0 1 2 0.00023 0.11 12.3 0.0 1 79 3 84 3 111 0.64 Adenylylsulphate kinase APS_kinase PF01583.20 158 CP023544_00059 - 181 0.0076 16.2 0.0 2 2 0.37 1.8e+02 1.9 0.0 44 74 118 148 98 155 0.85 Adenylylsulphate kinase AAA_30 PF13604.6 192 CP023544_00059 - 181 0.0092 15.7 0.1 1 1 3.2e-05 0.016 15.0 0.1 17 40 3 26 1 39 0.82 AAA domain AAA_24 PF13479.6 197 CP023544_00059 - 181 0.0096 15.7 0.3 1 1 2e-05 0.0097 15.6 0.3 3 23 5 30 3 171 0.85 AAA domain Ploopntkinase1 PF18748.1 196 CP023544_00059 - 181 0.0099 15.4 0.0 1 2 0.087 42 3.6 0.0 16 41 3 28 1 41 0.82 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 CP023544_00059 - 181 0.0099 15.4 0.0 2 2 0.00091 0.44 10.0 0.0 93 164 72 143 54 154 0.81 P-loop Nucleotide Kinase1 T2SSE PF00437.20 273 CP023544_00059 - 181 0.011 14.8 0.0 1 1 3.4e-05 0.016 14.3 0.0 130 158 5 33 1 75 0.82 Type II/IV secretion system protein ATPase PF06745.13 231 CP023544_00059 - 181 0.011 15.1 1.2 1 2 3.6e-05 0.017 14.5 0.1 18 37 3 22 1 35 0.87 KaiC ATPase PF06745.13 231 CP023544_00059 - 181 0.011 15.1 1.2 2 2 2.3 1.1e+03 -1.3 0.1 98 129 123 159 100 175 0.49 KaiC Rad17 PF03215.15 186 CP023544_00059 - 181 0.012 15.5 0.0 1 2 8.1e-05 0.039 13.9 0.0 45 71 4 30 1 40 0.88 Rad17 P-loop domain Rad17 PF03215.15 186 CP023544_00059 - 181 0.012 15.5 0.0 2 2 3.2 1.5e+03 -1.1 0.0 113 146 110 145 96 169 0.62 Rad17 P-loop domain SRP54 PF00448.22 196 CP023544_00059 - 181 0.016 14.8 0.1 1 1 6.3e-05 0.031 13.9 0.1 3 40 6 42 4 49 0.84 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 168 CP023544_00059 - 181 0.021 14.7 1.0 1 2 0.0001 0.049 13.5 0.3 2 22 7 27 6 35 0.85 NTPase NTPase_1 PF03266.15 168 CP023544_00059 - 181 0.021 14.7 1.0 2 2 2.1 1e+03 -0.5 0.0 115 136 97 118 58 172 0.59 NTPase dNK PF01712.19 204 CP023544_00059 - 181 0.034 14.0 0.2 1 2 0.0019 0.94 9.3 0.0 1 52 7 75 7 77 0.66 Deoxynucleoside kinase dNK PF01712.19 204 CP023544_00059 - 181 0.034 14.0 0.2 2 2 0.19 94 2.8 0.2 118 162 102 143 92 175 0.70 Deoxynucleoside kinase Sigma54_activat PF00158.26 168 CP023544_00059 - 181 0.035 13.8 0.0 1 1 0.00014 0.066 12.9 0.0 25 68 7 57 1 89 0.76 Sigma-54 interaction domain TIP49 PF06068.13 351 CP023544_00059 - 181 0.035 13.3 0.2 1 2 0.00023 0.11 11.6 0.0 50 77 4 31 1 46 0.84 TIP49 P-loop domain TIP49 PF06068.13 351 CP023544_00059 - 181 0.035 13.3 0.2 2 2 1.4 7e+02 -0.8 0.1 148 178 126 156 105 172 0.75 TIP49 P-loop domain ATPase_2 PF01637.18 233 CP023544_00059 - 181 0.039 13.8 0.3 1 2 0.0045 2.2 8.2 0.0 19 49 3 32 1 50 0.75 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 CP023544_00059 - 181 0.039 13.8 0.3 2 2 0.085 41 4.0 0.1 48 97 102 150 92 179 0.53 ATPase domain predominantly from Archaea DnaB_C PF03796.15 255 CP023544_00059 - 181 0.06 12.7 0.4 1 2 0.00026 0.13 11.6 0.0 17 47 2 32 1 42 0.83 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP023544_00059 - 181 0.06 12.7 0.4 2 2 2.6 1.3e+03 -1.5 0.1 84 91 136 143 98 179 0.39 DnaB-like helicase C terminal domain MKT1_N PF12247.8 90 CP023544_00059 - 181 0.069 13.5 0.0 1 1 0.00057 0.28 11.6 0.0 14 51 39 74 36 147 0.88 Temperature dependent protein affecting M2 dsRNA replication AAA_11 PF13086.6 261 CP023544_00059 - 181 0.073 12.8 1.5 1 1 0.00025 0.12 12.1 1.5 16 42 3 29 1 179 0.85 AAA domain PhoH PF02562.16 205 CP023544_00059 - 181 0.076 12.5 0.1 1 1 0.0003 0.14 11.5 0.1 18 49 3 34 1 36 0.84 PhoH-like protein RNA_helicase PF00910.22 107 CP023544_00059 - 181 0.089 13.2 0.0 1 1 0.00032 0.16 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase NACHT PF05729.12 166 CP023544_00059 - 181 0.1 12.5 0.0 1 1 0.00036 0.17 11.8 0.0 1 40 5 45 5 73 0.78 NACHT domain ATP-synt_ab PF00006.25 213 CP023544_00059 - 181 0.14 11.8 0.0 1 1 0.00028 0.14 11.8 0.0 13 45 3 34 1 178 0.82 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 181 CP023544_00059 - 181 0.18 11.3 0.7 1 2 0.00058 0.28 10.7 0.1 31 63 2 34 1 46 0.80 P-loop containing dynein motor region AAA_7 PF12775.7 181 CP023544_00059 - 181 0.18 11.3 0.7 2 2 8.9 4.3e+03 -3.0 0.0 65 82 156 173 132 176 0.64 P-loop containing dynein motor region Cytidylate_kin2 PF13189.6 179 CP023544_00059 - 181 0.2 11.8 1.5 1 2 0.038 19 5.4 0.1 1 23 6 28 6 36 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 CP023544_00059 - 181 0.2 11.8 1.5 2 2 0.026 12 5.9 0.1 108 147 99 138 28 143 0.73 Cytidylate kinase-like family APH PF01636.23 240 CP023544_00060 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 CP023544_00060 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 CP023544_00060 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 CP023544_00060 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 CP023544_00060 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 CP023544_00060 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 CP023544_00061 - 139 2.2e-51 174.9 0.1 1 1 1.4e-55 2.4e-51 174.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase Adenyl_transf PF04439.12 279 CP023544_00062 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 CP023544_00063 - 180 3.8e-20 72.3 0.1 1 1 2.3e-23 5.3e-20 71.8 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 CP023544_00063 - 180 1.2e-13 51.2 0.1 1 1 9.1e-17 2e-13 50.5 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 CP023544_00063 - 180 2.7e-12 46.7 0.0 1 1 1.6e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 CP023544_00063 - 180 1.1e-09 38.6 1.1 1 1 6e-13 1.3e-09 38.3 1.1 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 CP023544_00063 - 180 0.0011 19.7 0.0 1 1 6.1e-07 0.0014 19.4 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 CP023544_00063 - 180 0.0011 19.0 0.0 1 1 1.2e-06 0.0027 17.8 0.0 6 58 79 130 73 132 0.85 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 CP023544_00063 - 180 0.015 15.4 0.0 1 1 2.6e-05 0.059 13.5 0.0 21 126 50 154 43 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 CP023544_00063 - 180 0.038 14.0 0.0 1 1 2.9e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein APH PF01636.23 240 CP023544_00064 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 CP023544_00064 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 CP023544_00064 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 CP023544_00064 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family zf-HC2 PF13490.6 35 CP023544_00065 - 221 3.2e-06 27.3 2.7 1 1 1.2e-09 6.9e-06 26.2 2.7 4 35 11 42 9 42 0.97 Putative zinc-finger Glyco_hydro_100 PF12899.7 435 CP023544_00065 - 221 0.11 11.1 0.0 1 2 5.6e-05 0.34 9.5 0.0 29 75 3 50 1 72 0.86 Alkaline and neutral invertase Glyco_hydro_100 PF12899.7 435 CP023544_00065 - 221 0.11 11.1 0.0 2 2 0.094 5.6e+02 -1.1 0.0 265 319 107 163 99 169 0.82 Alkaline and neutral invertase TetR_C_11 PF16859.5 113 CP023544_00065 - 221 0.15 12.4 0.7 1 1 3.5e-05 0.21 11.9 0.7 12 111 12 110 11 112 0.88 Tetracyclin repressor-like, C-terminal domain Sigma70_r4_2 PF08281.12 54 CP023544_00066 - 150 2.5e-07 30.3 0.0 1 1 6.3e-11 3.8e-07 29.7 0.0 1 54 87 140 87 140 0.97 Sigma-70, region 4 Sigma70_r4 PF04545.16 50 CP023544_00066 - 150 3.8e-06 26.3 0.0 1 1 1.1e-09 6.3e-06 25.6 0.0 1 48 93 140 93 142 0.93 Sigma-70, region 4 HTH_38 PF13936.6 44 CP023544_00066 - 150 0.021 14.6 0.0 1 1 6.9e-06 0.041 13.6 0.0 3 33 95 125 93 126 0.92 Helix-turn-helix domain Resolvase PF00239.21 146 CP023546_00001 - 128 3e-12 46.9 0.0 1 1 5e-16 4.5e-12 46.3 0.0 82 146 3 69 1 69 0.94 Resolvase, N terminal domain HTH_38 PF13936.6 44 CP023546_00001 - 128 0.011 15.5 0.1 1 2 0.00053 4.7 7.0 0.0 2 35 41 75 41 78 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 CP023546_00001 - 128 0.011 15.5 0.1 2 2 0.0009 8.1 6.3 0.0 11 26 86 101 82 105 0.88 Helix-turn-helix domain AAA_25 PF13481.6 194 CP023546_00002 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 CP023546_00002 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP023546_00002 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 CP023546_00002 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 CP023546_00002 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 CP023546_00002 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 CP023546_00002 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 CP023546_00002 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP023546_00002 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 CP023546_00002 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 CP023546_00002 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP023546_00002 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 CP023546_00002 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) HicA_toxin PF07927.12 58 CP023546_00003 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 CP023546_00004 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 CP023546_00006 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 CP023546_00006 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 CP023546_00006 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) DUF4223 PF13978.6 54 CP023546_00007 - 97 0.007 16.3 0.0 1 1 1.7e-06 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) nec1 PF10379.9 184 CP023546_00007 - 97 0.067 12.7 0.0 1 1 1.1e-05 0.099 12.1 0.0 65 105 56 94 35 96 0.75 Virulence protein nec1 Toprim_3 PF13362.6 95 CP023546_00008 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 CP023546_00008 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 CP023546_00008 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 CP023546_00008 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 CP023546_00008 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold Sds3 PF08598.11 218 CP023546_00011 - 93 0.041 13.9 5.7 1 1 8e-06 0.048 13.7 5.7 45 97 7 62 5 87 0.82 Sds3-like ESP PF16590.5 91 CP023546_00011 - 93 0.48 10.7 5.3 1 2 0.036 2.2e+02 2.2 0.8 26 70 3 44 2 49 0.66 Exocrine gland-secreting peptide ESP PF16590.5 91 CP023546_00011 - 93 0.48 10.7 5.3 2 2 4.4e-05 0.26 11.6 0.5 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF3671 PF12420.8 115 CP023546_00011 - 93 4.2 7.5 13.8 1 2 0.021 1.3e+02 2.7 3.6 24 49 17 42 3 46 0.72 Protein of unknown function DUF3671 PF12420.8 115 CP023546_00011 - 93 4.2 7.5 13.8 2 2 7e-05 0.42 10.7 2.6 4 32 59 85 56 93 0.81 Protein of unknown function HTH_46 PF15977.5 68 CP023546_00012 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP023546_00012 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 CP023546_00012 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 CP023546_00012 - 183 0.046 13.8 2.1 1 1 1.7e-05 0.063 13.4 1.5 55 131 19 103 9 124 0.70 Stage III sporulation protein AB (spore_III_AB) NLRC4_HD PF17889.1 107 CP023546_00012 - 183 0.18 12.1 5.5 1 2 0.00027 0.98 9.8 1.8 14 92 6 84 3 98 0.81 NLRC4 helical domain NLRC4_HD PF17889.1 107 CP023546_00012 - 183 0.18 12.1 5.5 2 2 0.016 56 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 CP023546_00012 - 183 0.41 10.7 8.1 1 3 0.32 1.1e+03 -0.3 0.1 40 55 12 27 4 54 0.75 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP023546_00012 - 183 0.41 10.7 8.1 2 3 0.011 39 4.4 0.6 11 46 56 91 51 97 0.87 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 CP023546_00012 - 183 0.41 10.7 8.1 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 CP023546_00012 - 183 0.42 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 CP023546_00012 - 183 0.42 10.9 6.2 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Relaxase PF03432.14 242 CP023546_00013 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 CP023546_00013 - 462 4.7e-10 39.5 7.4 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain DUF3913 PF13052.6 57 CP023546_00014 - 82 0.046 14.0 0.3 1 1 4.2e-06 0.076 13.3 0.2 29 53 35 58 28 62 0.76 Protein of unknown function (DUF3913) Acetyltransf_7 PF13508.7 76 CP023546_00015 - 166 0.00015 22.1 0.0 1 1 1e-07 0.00031 21.1 0.0 29 75 12 75 2 76 0.60 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 CP023546_00015 - 166 0.003 17.8 0.0 1 1 2.5e-06 0.0073 16.5 0.0 65 92 14 41 6 74 0.80 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 CP023546_00015 - 166 0.0052 16.8 0.3 1 1 2.7e-06 0.0082 16.2 0.3 24 67 103 146 86 150 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PHM7_cyt PF14703.6 176 CP023546_00015 - 166 0.095 12.9 0.2 1 1 5.2e-05 0.15 12.2 0.2 30 85 98 153 86 159 0.81 Cytosolic domain of 10TM putative phosphate transporter Acetyltransf_10 PF13673.7 127 CP023546_00015 - 166 0.12 12.4 0.0 1 1 0.00011 0.33 10.9 0.0 55 84 13 42 4 84 0.79 Acetyltransferase (GNAT) domain Spc24 PF08286.11 105 CP023546_00015 - 166 0.39 11.0 3.2 1 2 0.00045 1.3 9.3 0.2 54 89 63 108 31 115 0.67 Spc24 subunit of Ndc80 Spc24 PF08286.11 105 CP023546_00015 - 166 0.39 11.0 3.2 2 2 0.04 1.2e+02 3.0 0.7 12 43 111 142 101 152 0.69 Spc24 subunit of Ndc80 NYN PF01936.18 147 CP023546_00016 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 CP023546_00016 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 CP023546_00016 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 CP023546_00016 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) SNF2_N PF00176.23 350 CP023546_00017 - 1931 3.7e-16 58.8 2.9 1 3 1.3e-19 4.5e-16 58.5 0.1 57 245 1017 1272 935 1313 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP023546_00017 - 1931 3.7e-16 58.8 2.9 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 CP023546_00017 - 1931 3.7e-16 58.8 2.9 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1875 1923 1845 1924 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 CP023546_00017 - 1931 7.5e-08 32.6 8.9 1 2 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 CP023546_00017 - 1931 7.5e-08 32.6 8.9 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1798 1909 1724 1931 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 CP023546_00017 - 1931 9.7e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 CP023546_00017 - 1931 9.7e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 CP023546_00017 - 1931 9.5e-06 25.5 2.0 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 CP023546_00017 - 1931 9.5e-06 25.5 2.0 2 2 0.12 4.2e+02 0.6 0.0 119 150 1882 1915 1827 1930 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 CP023546_00017 - 1931 2.5e-05 24.7 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 CP023546_00017 - 1931 2.5e-05 24.7 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 CP023546_00018 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 CP023546_00018 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal AAA_31 PF13614.6 177 CP023546_00019 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 CP023546_00019 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 CP023546_00019 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 CP023546_00019 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 CP023546_00019 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 CP023546_00019 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 CP023546_00020 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 CP023546_00020 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 CP023546_00021 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 CP023546_00021 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 CP023546_00021 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 CP023546_00021 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 CP023546_00021 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 CP023546_00021 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 CP023546_00022 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 CP023546_00022 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 CP023546_00022 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 CP023546_00022 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 CP023546_00022 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 CP023546_00022 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 CP023546_00022 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 CP023546_00022 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 CP023546_00022 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 CP023546_00023 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 CP023546_00023 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain Lip_prot_lig_C PF10437.9 85 CP023546_00024 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 CP023546_00024 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 CP023546_00024 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 CP023546_00024 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain W2 PF02020.18 79 CP023546_00025 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 CP023546_00025 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 CP023546_00025 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Sigma70_r4_2 PF08281.12 54 CP023546_00026 - 150 2.5e-07 30.3 0.0 1 1 6.3e-11 3.8e-07 29.7 0.0 1 54 87 140 87 140 0.97 Sigma-70, region 4 Sigma70_r4 PF04545.16 50 CP023546_00026 - 150 3.8e-06 26.3 0.0 1 1 1.1e-09 6.3e-06 25.6 0.0 1 48 93 140 93 142 0.93 Sigma-70, region 4 HTH_38 PF13936.6 44 CP023546_00026 - 150 0.021 14.6 0.0 1 1 6.9e-06 0.041 13.6 0.0 3 33 95 125 93 126 0.92 Helix-turn-helix domain zf-HC2 PF13490.6 35 CP023546_00027 - 221 3.2e-06 27.3 2.7 1 1 1.2e-09 6.9e-06 26.2 2.7 4 35 11 42 9 42 0.97 Putative zinc-finger Glyco_hydro_100 PF12899.7 435 CP023546_00027 - 221 0.11 11.1 0.0 1 2 5.6e-05 0.34 9.5 0.0 29 75 3 50 1 72 0.86 Alkaline and neutral invertase Glyco_hydro_100 PF12899.7 435 CP023546_00027 - 221 0.11 11.1 0.0 2 2 0.094 5.6e+02 -1.1 0.0 265 319 107 163 99 169 0.82 Alkaline and neutral invertase TetR_C_11 PF16859.5 113 CP023546_00027 - 221 0.15 12.4 0.7 1 1 3.5e-05 0.21 11.9 0.7 12 111 12 110 11 112 0.88 Tetracyclin repressor-like, C-terminal domain APH PF01636.23 240 CP023546_00028 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 CP023546_00028 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 CP023546_00028 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 CP023546_00028 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family Acetyltransf_1 PF00583.25 117 CP023546_00029 - 180 3.8e-20 72.3 0.1 1 1 2.3e-23 5.3e-20 71.8 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 CP023546_00029 - 180 1.2e-13 51.2 0.1 1 1 9.1e-17 2e-13 50.5 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 CP023546_00029 - 180 2.7e-12 46.7 0.0 1 1 1.6e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 CP023546_00029 - 180 1.1e-09 38.6 1.1 1 1 6e-13 1.3e-09 38.3 1.1 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 CP023546_00029 - 180 0.0011 19.7 0.0 1 1 6.1e-07 0.0014 19.4 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 CP023546_00029 - 180 0.0011 19.0 0.0 1 1 1.2e-06 0.0027 17.8 0.0 6 58 79 130 73 132 0.85 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 CP023546_00029 - 180 0.015 15.4 0.0 1 1 2.6e-05 0.059 13.5 0.0 21 126 50 154 43 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 CP023546_00029 - 180 0.038 14.0 0.0 1 1 2.9e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein Adenyl_transf PF04439.12 279 CP023546_00030 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Peptidase_C15 PF01470.17 202 CP023546_00031 - 139 2.2e-51 174.9 0.1 1 1 1.4e-55 2.4e-51 174.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase APH PF01636.23 240 CP023546_00032 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 CP023546_00032 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 CP023546_00032 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 CP023546_00032 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 CP023546_00032 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 CP023546_00032 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase AAA_18 PF13238.6 130 CP023546_00033 - 181 5.7e-14 52.8 0.0 1 1 1.6e-16 7.6e-14 52.4 0.0 1 124 7 135 7 141 0.86 AAA domain CPT PF07931.12 174 CP023546_00033 - 181 3e-09 37.0 0.0 1 1 1.2e-11 5.8e-09 36.0 0.0 1 172 4 172 4 174 0.81 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 CP023546_00033 - 181 6.4e-09 36.1 0.0 1 1 1.9e-11 9.4e-09 35.6 0.0 2 136 7 144 6 146 0.81 AAA domain Zeta_toxin PF06414.12 199 CP023546_00033 - 181 1.5e-08 34.2 0.0 1 1 7.5e-11 3.6e-08 32.9 0.0 18 162 6 140 2 174 0.78 Zeta toxin AAA PF00004.29 132 CP023546_00033 - 181 8.7e-06 26.2 0.2 1 2 1.7e-07 8.1e-05 23.1 0.0 2 34 8 41 7 83 0.78 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 CP023546_00033 - 181 8.7e-06 26.2 0.2 2 2 0.71 3.5e+02 1.6 0.0 104 131 108 135 56 136 0.84 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 163 CP023546_00033 - 181 0.0001 22.6 0.1 1 2 8.3e-07 0.0004 20.7 0.0 2 62 7 71 6 85 0.62 AAA domain AAA_28 PF13521.6 163 CP023546_00033 - 181 0.0001 22.6 0.1 2 2 2.6 1.2e+03 -0.4 0.1 137 137 133 133 91 177 0.52 AAA domain AAA_17 PF13207.6 136 CP023546_00033 - 181 0.0002 21.8 0.0 1 1 7.1e-07 0.00035 21.0 0.0 1 128 10 131 10 139 0.78 AAA domain AAA_22 PF13401.6 137 CP023546_00033 - 181 0.00034 20.9 0.0 1 2 2e-06 0.00099 19.4 0.0 4 33 3 32 1 84 0.83 AAA domain AAA_22 PF13401.6 137 CP023546_00033 - 181 0.00034 20.9 0.0 2 2 3.7 1.8e+03 -0.9 0.0 62 83 121 141 96 178 0.64 AAA domain AAA_14 PF13173.6 131 CP023546_00033 - 181 0.00043 20.3 0.0 1 1 1.4e-06 0.00066 19.7 0.0 2 127 4 141 3 145 0.72 AAA domain RuvB_N PF05496.12 159 CP023546_00033 - 181 0.0016 18.2 0.1 1 2 1.2e-05 0.0057 16.4 0.0 36 60 7 31 3 49 0.85 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 CP023546_00033 - 181 0.0016 18.2 0.1 2 2 3.1 1.5e+03 -1.2 0.0 96 114 111 129 104 167 0.72 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 146 CP023546_00033 - 181 0.0024 18.2 0.0 1 1 8.6e-06 0.0042 17.4 0.0 9 35 3 29 1 77 0.87 AAA domain ABC_tran PF00005.27 137 CP023546_00033 - 181 0.0031 18.0 0.1 1 1 8.5e-06 0.0041 17.6 0.1 9 43 2 35 1 133 0.85 ABC transporter AAA_16 PF13191.6 170 CP023546_00033 - 181 0.0045 17.4 0.0 1 1 1.9e-05 0.0092 16.4 0.0 22 62 2 43 1 76 0.75 AAA ATPase domain KTI12 PF08433.10 272 CP023546_00033 - 181 0.0048 16.4 0.0 1 2 2e-05 0.0095 15.4 0.0 3 42 6 44 5 87 0.74 Chromatin associated protein KTI12 KTI12 PF08433.10 272 CP023546_00033 - 181 0.0048 16.4 0.0 2 2 4.5 2.2e+03 -2.2 0.0 263 263 137 137 104 174 0.57 Chromatin associated protein KTI12 DUF2075 PF09848.9 363 CP023546_00033 - 181 0.005 16.1 0.2 1 1 1.6e-05 0.0077 15.5 0.1 2 29 5 32 4 68 0.84 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.20 158 CP023546_00033 - 181 0.0076 16.2 0.0 1 2 0.00023 0.11 12.3 0.0 1 79 3 84 3 111 0.64 Adenylylsulphate kinase APS_kinase PF01583.20 158 CP023546_00033 - 181 0.0076 16.2 0.0 2 2 0.37 1.8e+02 1.9 0.0 44 74 118 148 98 155 0.85 Adenylylsulphate kinase AAA_30 PF13604.6 192 CP023546_00033 - 181 0.0092 15.7 0.1 1 1 3.2e-05 0.016 15.0 0.1 17 40 3 26 1 39 0.82 AAA domain AAA_24 PF13479.6 197 CP023546_00033 - 181 0.0096 15.7 0.3 1 1 2e-05 0.0097 15.6 0.3 3 23 5 30 3 171 0.85 AAA domain Ploopntkinase1 PF18748.1 196 CP023546_00033 - 181 0.0099 15.4 0.0 1 2 0.087 42 3.6 0.0 16 41 3 28 1 41 0.82 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 CP023546_00033 - 181 0.0099 15.4 0.0 2 2 0.00091 0.44 10.0 0.0 93 164 72 143 54 154 0.81 P-loop Nucleotide Kinase1 T2SSE PF00437.20 273 CP023546_00033 - 181 0.011 14.8 0.0 1 1 3.4e-05 0.016 14.3 0.0 130 158 5 33 1 75 0.82 Type II/IV secretion system protein ATPase PF06745.13 231 CP023546_00033 - 181 0.011 15.1 1.2 1 2 3.6e-05 0.017 14.5 0.1 18 37 3 22 1 35 0.87 KaiC ATPase PF06745.13 231 CP023546_00033 - 181 0.011 15.1 1.2 2 2 2.3 1.1e+03 -1.3 0.1 98 129 123 159 100 175 0.49 KaiC Rad17 PF03215.15 186 CP023546_00033 - 181 0.012 15.5 0.0 1 2 8.1e-05 0.039 13.9 0.0 45 71 4 30 1 40 0.88 Rad17 P-loop domain Rad17 PF03215.15 186 CP023546_00033 - 181 0.012 15.5 0.0 2 2 3.2 1.5e+03 -1.1 0.0 113 146 110 145 96 169 0.62 Rad17 P-loop domain SRP54 PF00448.22 196 CP023546_00033 - 181 0.016 14.8 0.1 1 1 6.3e-05 0.031 13.9 0.1 3 40 6 42 4 49 0.84 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 168 CP023546_00033 - 181 0.021 14.7 1.0 1 2 0.0001 0.049 13.5 0.3 2 22 7 27 6 35 0.85 NTPase NTPase_1 PF03266.15 168 CP023546_00033 - 181 0.021 14.7 1.0 2 2 2.1 1e+03 -0.5 0.0 115 136 97 118 58 172 0.59 NTPase dNK PF01712.19 204 CP023546_00033 - 181 0.034 14.0 0.2 1 2 0.0019 0.94 9.3 0.0 1 52 7 75 7 77 0.66 Deoxynucleoside kinase dNK PF01712.19 204 CP023546_00033 - 181 0.034 14.0 0.2 2 2 0.19 94 2.8 0.2 118 162 102 143 92 175 0.70 Deoxynucleoside kinase Sigma54_activat PF00158.26 168 CP023546_00033 - 181 0.035 13.8 0.0 1 1 0.00014 0.066 12.9 0.0 25 68 7 57 1 89 0.76 Sigma-54 interaction domain TIP49 PF06068.13 351 CP023546_00033 - 181 0.035 13.3 0.2 1 2 0.00023 0.11 11.6 0.0 50 77 4 31 1 46 0.84 TIP49 P-loop domain TIP49 PF06068.13 351 CP023546_00033 - 181 0.035 13.3 0.2 2 2 1.4 7e+02 -0.8 0.1 148 178 126 156 105 172 0.75 TIP49 P-loop domain ATPase_2 PF01637.18 233 CP023546_00033 - 181 0.039 13.8 0.3 1 2 0.0045 2.2 8.2 0.0 19 49 3 32 1 50 0.75 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 CP023546_00033 - 181 0.039 13.8 0.3 2 2 0.085 41 4.0 0.1 48 97 102 150 92 179 0.53 ATPase domain predominantly from Archaea DnaB_C PF03796.15 255 CP023546_00033 - 181 0.06 12.7 0.4 1 2 0.00026 0.13 11.6 0.0 17 47 2 32 1 42 0.83 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 CP023546_00033 - 181 0.06 12.7 0.4 2 2 2.6 1.3e+03 -1.5 0.1 84 91 136 143 98 179 0.39 DnaB-like helicase C terminal domain MKT1_N PF12247.8 90 CP023546_00033 - 181 0.069 13.5 0.0 1 1 0.00057 0.28 11.6 0.0 14 51 39 74 36 147 0.88 Temperature dependent protein affecting M2 dsRNA replication AAA_11 PF13086.6 261 CP023546_00033 - 181 0.073 12.8 1.5 1 1 0.00025 0.12 12.1 1.5 16 42 3 29 1 179 0.85 AAA domain PhoH PF02562.16 205 CP023546_00033 - 181 0.076 12.5 0.1 1 1 0.0003 0.14 11.5 0.1 18 49 3 34 1 36 0.84 PhoH-like protein RNA_helicase PF00910.22 107 CP023546_00033 - 181 0.089 13.2 0.0 1 1 0.00032 0.16 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase NACHT PF05729.12 166 CP023546_00033 - 181 0.1 12.5 0.0 1 1 0.00036 0.17 11.8 0.0 1 40 5 45 5 73 0.78 NACHT domain ATP-synt_ab PF00006.25 213 CP023546_00033 - 181 0.14 11.8 0.0 1 1 0.00028 0.14 11.8 0.0 13 45 3 34 1 178 0.82 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 181 CP023546_00033 - 181 0.18 11.3 0.7 1 2 0.00058 0.28 10.7 0.1 31 63 2 34 1 46 0.80 P-loop containing dynein motor region AAA_7 PF12775.7 181 CP023546_00033 - 181 0.18 11.3 0.7 2 2 8.9 4.3e+03 -3.0 0.0 65 82 156 173 132 176 0.64 P-loop containing dynein motor region Cytidylate_kin2 PF13189.6 179 CP023546_00033 - 181 0.2 11.8 1.5 1 2 0.038 19 5.4 0.1 1 23 6 28 6 36 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 CP023546_00033 - 181 0.2 11.8 1.5 2 2 0.026 12 5.9 0.1 108 147 99 138 28 143 0.73 Cytidylate kinase-like family DUF4111 PF13427.6 103 CP023546_00034 - 55 0.0023 18.0 0.0 1 1 1.5e-07 0.0027 17.9 0.0 69 103 13 47 7 47 0.95 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 CP023546_00035 - 218 3.1e-17 62.6 0.0 1 3 0.56 2.5e+03 -1.3 0.0 60 80 3 23 2 25 0.81 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 CP023546_00035 - 218 3.1e-17 62.6 0.0 2 3 1.5 6.8e+03 -2.7 0.0 8 22 52 66 50 72 0.73 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 CP023546_00035 - 218 3.1e-17 62.6 0.0 3 3 3.9e-20 1.8e-16 60.2 0.0 1 67 148 214 148 217 0.97 Domain of unknown function (DUF4111) Polbeta PF18765.1 93 CP023546_00035 - 218 8.7e-10 38.6 0.0 1 2 8.5e-13 3.8e-09 36.5 0.0 8 74 22 92 11 97 0.77 Polymerase beta, Nucleotidyltransferase Polbeta PF18765.1 93 CP023546_00035 - 218 8.7e-10 38.6 0.0 2 2 0.33 1.5e+03 -0.6 0.0 17 42 103 134 98 153 0.72 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 95 CP023546_00035 - 218 2.4e-06 27.8 0.0 1 1 1e-09 4.5e-06 26.9 0.0 14 76 25 89 11 107 0.76 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 199 CP023546_00035 - 218 0.00015 21.7 0.0 1 1 4.6e-08 0.00021 21.3 0.0 88 138 21 71 2 84 0.86 Adenylate cyclase NT domain PNP_UDP_1 PF01048.20 234 CP023546_00036 - 256 7.6e-29 100.6 0.0 1 1 4.8e-33 8.7e-29 100.4 0.0 3 219 34 237 32 255 0.86 Phosphorylase superfamily CPSF_A PF03178.15 322 CP023546_00037 - 95 0.034 13.4 0.0 1 1 9.6e-06 0.034 13.4 0.0 248 286 57 94 23 95 0.80 CPSF A subunit region ATPase PF06745.13 231 CP023546_00037 - 95 0.048 13.0 0.2 1 1 1.4e-05 0.049 13.0 0.2 73 152 7 87 1 94 0.74 KaiC TipAS PF07739.13 117 CP023546_00037 - 95 0.061 13.9 1.5 1 1 0.00033 1.2 9.7 1.9 27 96 5 80 1 92 0.80 TipAS antibiotic-recognition domain 3HCDH PF00725.22 97 CP023546_00037 - 95 0.091 13.4 0.2 1 1 3.8e-05 0.14 12.8 0.2 7 65 36 93 33 95 0.91 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DUF4942 PF13708.6 199 CP023546_00037 - 95 0.15 12.0 0.0 1 1 7.1e-05 0.26 11.3 0.0 22 74 36 87 33 93 0.88 Domain of unknown function (DUF4942) GTP_EFTU PF00009.27 194 CP023546_00039 - 639 5.6e-59 198.9 0.3 1 1 3.9e-62 7.8e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 CP023546_00039 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 CP023546_00039 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 CP023546_00039 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 CP023546_00039 - 639 2.1e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 CP023546_00039 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 CP023546_00039 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 CP023546_00039 - 639 0.0091 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 CP023546_00039 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 CP023546_00039 - 639 0.05 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family APH PF01636.23 240 CP023546_00040 - 306 5.8e-22 78.8 0.0 1 1 2.1e-25 7.5e-22 78.4 0.0 13 230 39 256 27 265 0.75 Phosphotransferase enzyme family RIO1 PF01163.22 188 CP023546_00040 - 306 2.1e-06 27.5 0.1 1 2 0.00064 2.3 7.8 0.0 47 111 52 117 46 131 0.76 RIO1 family RIO1 PF01163.22 188 CP023546_00040 - 306 2.1e-06 27.5 0.1 2 2 5.8e-07 0.0021 17.7 0.1 97 154 165 223 149 253 0.81 RIO1 family DUF1679 PF07914.11 414 CP023546_00040 - 306 0.00034 19.6 0.1 1 2 1 3.7e+03 -3.6 0.0 113 142 60 89 55 92 0.78 Protein of unknown function (DUF1679) DUF1679 PF07914.11 414 CP023546_00040 - 306 0.00034 19.6 0.1 2 2 1.6e-07 0.00056 18.9 0.0 213 318 134 238 102 253 0.70 Protein of unknown function (DUF1679) Choline_kinase PF01633.20 213 CP023546_00040 - 306 0.00076 19.1 0.2 1 2 5.9e-07 0.0021 17.7 0.1 21 171 61 218 46 219 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 CP023546_00040 - 306 0.00076 19.1 0.2 2 2 0.51 1.8e+03 -1.7 0.0 6 25 249 268 247 271 0.89 Choline/ethanolamine kinase EcKinase PF02958.20 294 CP023546_00040 - 306 0.0095 15.3 0.1 1 1 3.7e-06 0.013 14.8 0.1 189 270 162 243 121 262 0.65 Ecdysteroid kinase PcfJ PF14284.6 144 CP023546_00042 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 CP023546_00042 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain Topoisom_bac PF01131.20 413 CP023546_00043 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 CP023546_00043 - 730 6.3e-12 45.6 2.6 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 CP023546_00043 - 730 6.3e-12 45.6 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 CP023546_00043 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 CP023546_00043 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 CP023546_00043 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP023546_00043 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 CP023546_00043 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 CP023546_00043 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 CP023546_00043 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 CP023546_00043 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CP023546_00043 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 CP023546_00043 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 CP023546_00043 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 CP023546_00043 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CP023546_00043 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 CP023546_00043 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 CP023546_00043 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 CP023546_00043 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 CP023546_00043 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 CP023546_00043 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 CP023546_00043 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP023546_00043 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 CP023546_00043 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 CP023546_00043 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 CP023546_00043 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 CP023546_00043 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 CP023546_00043 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 CP023546_00043 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 CP023546_00043 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 CP023546_00043 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 CP023546_00043 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 CP023546_00043 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 CP023546_00043 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type DUF1461 PF07314.11 189 CP023546_00044 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) CdhD PF03599.16 386 CP023546_00045 - 246 0.002 16.9 0.0 1 1 5.3e-07 0.0031 16.3 0.0 269 358 39 127 30 136 0.86 CO dehydrogenase/acetyl-CoA synthase delta subunit Pox_RNA_pol PF03293.14 160 CP023546_00045 - 246 0.012 15.3 0.9 1 1 4.5e-06 0.027 14.2 0.9 35 158 20 138 7 140 0.83 Poxvirus DNA-directed RNA polymerase, 18 kD subunit Redoxin PF08534.10 147 CP023546_00045 - 246 0.059 13.1 0.5 1 2 0.079 4.7e+02 0.4 0.0 117 146 49 76 31 77 0.79 Redoxin Redoxin PF08534.10 147 CP023546_00045 - 246 0.059 13.1 0.5 2 2 7.9e-05 0.47 10.2 0.1 49 76 184 213 178 230 0.79 Redoxin PRELI PF04707.14 157 CP023546_00046 - 265 0.044 13.6 0.3 1 2 0.26 2.4e+03 -1.8 0.1 107 133 23 45 5 72 0.49 PRELI-like family PRELI PF04707.14 157 CP023546_00046 - 265 0.044 13.6 0.3 2 2 4.9e-06 0.044 13.6 0.3 96 155 83 147 78 149 0.87 PRELI-like family TACC_C PF05010.14 201 CP023546_00046 - 265 0.92 9.3 9.3 1 2 0.00027 2.4 7.9 8.2 14 124 2 111 1 135 0.79 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 CP023546_00046 - 265 0.92 9.3 9.3 2 2 0.035 3.2e+02 1.0 1.1 8 45 100 139 94 148 0.70 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TrbM PF07424.11 156 CP023546_00047 - 252 4.1e-38 130.8 2.0 1 1 2.9e-42 5.3e-38 130.4 2.0 1 154 25 190 25 192 0.88 TrbM Cag12 PF13117.6 97 CP023546_00048 - 143 1.4e-16 60.7 0.3 1 1 2.1e-20 1.9e-16 60.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 CP023546_00048 - 143 0.06 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) T4SS-DNA_transf PF02534.14 469 CP023546_00049 - 603 8.3e-104 348.0 0.1 1 1 3.2e-107 1.1e-103 347.5 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 CP023546_00049 - 603 3.5e-24 85.2 0.0 1 1 1.9e-27 6.8e-24 84.3 0.0 2 125 406 528 405 529 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 CP023546_00049 - 603 3.2e-15 55.9 0.0 1 2 2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 CP023546_00049 - 603 3.2e-15 55.9 0.0 2 2 1.6e-13 5.8e-10 38.6 0.0 187 369 347 531 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 CP023546_00049 - 603 0.17 11.9 0.1 1 1 8.3e-05 0.3 11.2 0.1 37 93 9 87 3 100 0.78 Putative Actinobacterial Holin-X, holin superfamily III ECF_trnsprt PF12822.7 172 CP023546_00049 - 603 1.2 9.2 8.3 1 1 0.00056 2 8.5 8.3 101 168 4 79 1 81 0.85 ECF transporter, substrate-specific component Carbam_trans_N PF02543.15 338 CP023546_00050 - 267 0.053 13.2 0.0 1 1 4.1e-06 0.073 12.7 0.0 195 313 117 236 74 243 0.86 Carbamoyltransferase N-terminus T2SSE PF00437.20 273 CP023546_00051 - 339 6.9e-55 186.0 0.0 1 1 1.4e-57 8.1e-55 185.8 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 CP023546_00051 - 339 7.2e-05 23.3 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 CP023546_00051 - 339 0.00012 21.6 0.0 1 1 3.2e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 CP023546_00051 - 339 0.00028 20.4 0.0 1 1 9.2e-07 0.00052 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 CP023546_00051 - 339 0.0014 18.9 0.0 1 1 4.7e-06 0.0026 18.0 0.0 5 56 160 221 155 244 0.72 AAA domain DEAD PF00270.29 176 CP023546_00051 - 339 0.0014 18.4 0.0 1 1 4.1e-06 0.0023 17.7 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 CP023546_00051 - 339 0.0026 17.5 0.2 1 1 9.7e-06 0.0054 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 CP023546_00051 - 339 0.0035 17.3 0.0 1 1 1.3e-05 0.0073 16.3 0.0 10 45 152 186 141 194 0.74 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 CP023546_00051 - 339 0.0055 15.7 0.0 1 1 1.4e-05 0.0079 15.1 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 CP023546_00051 - 339 0.0073 16.2 0.0 1 1 2.3e-05 0.013 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 CP023546_00051 - 339 0.0088 15.4 0.0 1 1 2.6e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 CP023546_00051 - 339 0.0091 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 305 0.85 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 CP023546_00051 - 339 0.018 15.1 0.0 1 1 6.4e-05 0.036 14.2 0.0 27 48 164 185 142 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 CP023546_00051 - 339 0.021 13.8 0.0 1 1 6.2e-05 0.035 13.0 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 CP023546_00051 - 339 0.023 14.7 0.0 1 1 9.6e-05 0.054 13.5 0.0 5 50 147 186 135 248 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 CP023546_00051 - 339 0.024 14.4 0.0 1 1 9.2e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 CP023546_00051 - 339 0.026 14.2 0.0 1 1 9.8e-05 0.055 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 CP023546_00051 - 339 0.031 13.8 0.0 1 1 0.00011 0.061 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 CP023546_00051 - 339 0.035 14.2 0.1 1 1 0.00019 0.11 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 CP023546_00051 - 339 0.04 13.7 0.0 1 1 0.00011 0.064 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 CP023546_00051 - 339 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 CP023546_00051 - 339 0.046 13.0 0.0 1 1 0.00015 0.082 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin PRK PF00485.18 197 CP023546_00051 - 339 0.058 13.1 0.0 1 1 0.0002 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 CP023546_00051 - 339 0.065 11.9 0.0 1 1 0.00016 0.092 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 CP023546_00051 - 339 0.075 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 CP023546_00051 - 339 0.089 12.7 0.0 1 1 0.00036 0.2 11.5 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 CP023546_00051 - 339 0.089 12.7 0.4 1 1 0.00039 0.22 11.5 0.3 71 102 149 179 129 220 0.81 Microtubule binding NTPase_1 PF03266.15 168 CP023546_00051 - 339 0.11 12.4 0.1 1 1 0.00042 0.23 11.3 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 CP023546_00051 - 339 0.12 13.0 0.0 1 2 8.1 4.6e+03 -1.9 0.0 25 60 14 49 4 61 0.76 AAA domain AAA_18 PF13238.6 130 CP023546_00051 - 339 0.12 13.0 0.0 2 2 0.0007 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 CP023546_00051 - 339 0.15 11.7 0.0 1 1 0.00043 0.24 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 CP023546_00051 - 339 0.15 11.7 0.0 1 1 0.00044 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 CP023546_00051 - 339 0.38 11.2 4.1 1 2 2.7 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 CP023546_00051 - 339 0.38 11.2 4.1 2 2 0.00068 0.38 11.2 1.3 22 37 163 178 160 184 0.87 AAA domain TrbI PF03743.14 187 CP023546_00052 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.5e+03 -3.4 0.3 136 154 141 166 120 174 0.53 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 CP023546_00052 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 CP023546_00052 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease CagX PF03524.15 211 CP023546_00053 - 298 9.6e-56 188.8 1.9 1 1 8.4e-60 1.5e-55 188.2 1.9 2 211 32 273 31 273 0.92 Conjugal transfer protein VirB8 PF04335.13 214 CP023546_00054 - 219 1.6e-52 178.5 0.5 1 1 2e-56 1.8e-52 178.3 0.5 4 214 10 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 CP023546_00054 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C La_HTH_kDCL PF18177.1 90 CP023546_00055 - 54 0.2 12.0 0.0 1 1 1.2e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain TrbL PF04610.14 215 CP023546_00056 - 331 2.8e-30 105.7 32.6 1 2 6.2e-34 2.8e-30 105.7 32.6 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 CP023546_00056 - 331 2.8e-30 105.7 32.6 2 2 0.59 2.6e+03 -2.1 0.1 58 88 289 325 260 330 0.47 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 CP023546_00056 - 331 0.072 12.9 0.7 1 2 0.95 4.2e+03 -2.4 0.1 39 50 70 81 61 108 0.63 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 CP023546_00056 - 331 0.072 12.9 0.7 2 2 5e-05 0.23 11.3 0.1 37 81 243 287 222 298 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 CP023546_00056 - 331 0.17 11.9 0.0 1 1 6.8e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) AIM3 PF17096.5 88 CP023546_00056 - 331 0.3 12.1 6.0 1 1 0.00013 0.57 11.1 6.0 9 38 299 328 284 330 0.89 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 CP023546_00057 - 329 1.7e-28 100.4 13.1 1 1 5.2e-32 2.3e-28 99.9 13.1 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 CP023546_00057 - 329 0.0035 17.5 0.5 1 2 0.27 1.2e+03 -0.3 0.0 30 54 134 158 120 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 CP023546_00057 - 329 0.0035 17.5 0.5 2 2 4.7e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 CP023546_00057 - 329 0.018 15.7 0.8 1 2 1.3 6e+03 -2.1 0.0 55 70 124 139 101 163 0.57 von Willebrand factor type A domain VWA_2 PF13519.6 107 CP023546_00057 - 329 0.018 15.7 0.8 2 2 8.6e-06 0.039 14.6 0.2 31 84 208 270 197 295 0.83 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 CP023546_00057 - 329 0.48 11.1 11.5 1 2 0.042 1.9e+02 2.7 0.8 49 135 108 145 95 182 0.47 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 CP023546_00057 - 329 0.48 11.1 11.5 2 2 8.9e-05 0.4 11.4 4.6 49 117 225 307 205 328 0.69 Apoptosis antagonizing transcription factor IF2_N PF04760.15 54 CP023546_00058 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 CP023546_00058 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 CP023546_00058 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 CP023546_00058 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 CP023546_00058 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 CP023546_00058 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 CP023546_00058 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 CP023546_00059 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family PBECR2 PF18810.1 119 CP023546_00060 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 Phage_pRha PF09669.10 88 CP023546_00061 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 CP023546_00061 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 CP023546_00061 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) CagE_TrbE_VirB PF03135.14 206 CP023546_00062 - 922 3.1e-51 174.4 0.4 1 1 7.9e-55 7.1e-51 173.2 0.4 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 CP023546_00062 - 922 3.6e-21 75.2 0.8 1 1 6.9e-25 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein TrbC PF04956.13 99 CP023546_00063 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 CP023546_00063 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 CP023546_00065 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 CP023546_00065 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 Relaxase PF03432.14 242 KC907204_00001 - 416 2.1e-09 37.3 4.9 1 3 0.039 1.7e+02 1.6 2.4 127 195 13 80 2 112 0.51 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 KC907204_00001 - 416 2.1e-09 37.3 4.9 2 3 4.8e-13 2.1e-09 37.3 4.9 52 126 124 202 73 264 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 KC907204_00001 - 416 2.1e-09 37.3 4.9 3 3 1 4.7e+03 -3.1 0.5 40 52 378 390 338 412 0.53 Relaxase/Mobilisation nuclease domain B3 PF02362.21 101 KC907204_00001 - 416 0.00093 19.0 0.2 1 2 0.2 9.1e+02 -0.2 0.0 25 48 174 197 153 202 0.78 B3 DNA binding domain B3 PF02362.21 101 KC907204_00001 - 416 0.00093 19.0 0.2 2 2 2.3e-06 0.01 15.7 0.1 42 100 274 330 255 331 0.79 B3 DNA binding domain Ig_GlcNase PF18368.1 105 KC907204_00001 - 416 0.039 14.1 0.2 1 3 3.2 1.4e+04 -3.8 0.0 31 44 57 70 49 87 0.51 Exo-beta-D-glucosaminidase Ig-fold domain Ig_GlcNase PF18368.1 105 KC907204_00001 - 416 0.039 14.1 0.2 2 3 3.8e-05 0.17 12.0 0.0 13 71 147 205 137 233 0.79 Exo-beta-D-glucosaminidase Ig-fold domain Ig_GlcNase PF18368.1 105 KC907204_00001 - 416 0.039 14.1 0.2 3 3 1.2 5.3e+03 -2.4 0.0 31 44 340 354 322 361 0.72 Exo-beta-D-glucosaminidase Ig-fold domain DUF2884 PF11101.8 228 KC907204_00001 - 416 0.045 13.3 0.1 1 1 2.5e-05 0.11 12.0 0.1 82 144 60 121 55 129 0.89 Protein of unknown function (DUF2884) Lip_prot_lig_C PF10437.9 85 KX686749_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 KX686749_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 KX686749_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 KX686749_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 KX686749_00003 - 104 0.01 15.2 2.9 1 3 1.1e-06 0.01 15.2 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 KX686749_00003 - 104 0.01 15.2 2.9 2 3 0.76 6.8e+03 -3.4 0.2 16 22 67 73 66 77 0.52 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 KX686749_00003 - 104 0.01 15.2 2.9 3 3 0.27 2.4e+03 -2.0 1.0 17 29 91 103 89 104 0.78 Putative Flagellin, Flp1-like, domain vMSA PF00695.19 400 KX686749_00003 - 104 0.78 8.8 4.5 1 1 9.8e-05 0.88 8.6 4.5 330 398 26 100 7 102 0.74 Major surface antigen from hepadnavirus LysE PF01810.18 193 KX686749_00004 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 KX686749_00004 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 KX686749_00004 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 KX686749_00004 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 KX686749_00004 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 KX686749_00004 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 KX686749_00004 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 KX686749_00004 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 KX686749_00004 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 KX686749_00004 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 KX686749_00004 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 KX686749_00004 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 KX686749_00005 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 KX686749_00005 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 KX686749_00005 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 KX686749_00005 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 KX686749_00005 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 KX686749_00005 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 KX686749_00006 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 KX686749_00006 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 KX686749_00007 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 KX686749_00007 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 KX686749_00007 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 KX686749_00007 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 KX686749_00007 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 KX686749_00007 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 KX686749_00008 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 KX686749_00009 - 1931 1.4e-16 60.2 0.7 1 3 1.2e-19 4.2e-16 58.6 0.1 56 245 1016 1272 934 1313 0.73 SNF2 family N-terminal domain SNF2_N PF00176.23 350 KX686749_00009 - 1931 1.4e-16 60.2 0.7 2 3 0.98 3.5e+03 -3.6 0.0 245 282 1468 1510 1464 1524 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 KX686749_00009 - 1931 1.4e-16 60.2 0.7 3 3 1.1 3.9e+03 -3.8 0.0 172 199 1878 1906 1859 1914 0.75 SNF2 family N-terminal domain ResIII PF04851.15 171 KX686749_00009 - 1931 8.6e-08 32.4 8.6 1 2 2.4e-11 8.6e-08 32.4 8.6 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 KX686749_00009 - 1931 8.6e-08 32.4 8.6 2 2 0.34 1.2e+03 -0.7 5.2 33 121 1797 1903 1746 1928 0.65 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 KX686749_00009 - 1931 9.2e-07 29.2 0.2 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 KX686749_00009 - 1931 9.2e-07 29.2 0.2 2 2 1.4e-08 4.9e-05 23.6 0.0 40 111 1510 1583 1468 1583 0.79 Helicase conserved C-terminal domain Eco57I PF07669.11 106 KX686749_00009 - 1931 2.1e-05 24.9 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 KX686749_00009 - 1931 2.1e-05 24.9 0.7 2 2 1.7 6.1e+03 -2.2 0.0 43 81 662 700 654 715 0.69 Eco57I restriction-modification methylase DEAD PF00270.29 176 KX686749_00009 - 1931 2.5e-05 24.1 2.4 1 2 4.2e-07 0.0015 18.3 0.5 2 108 1003 1108 1002 1205 0.60 DEAD/DEAH box helicase DEAD PF00270.29 176 KX686749_00009 - 1931 2.5e-05 24.1 2.4 2 2 0.15 5.5e+02 0.2 0.1 120 143 1883 1908 1832 1928 0.67 DEAD/DEAH box helicase HTH_19 PF12844.7 65 KX686749_00010 - 314 1e-05 25.5 0.2 1 2 0.0055 7.1 6.7 0.0 11 31 9 29 1 42 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 KX686749_00010 - 314 1e-05 25.5 0.2 2 2 8.1e-06 0.01 15.8 0.0 27 64 116 152 91 153 0.90 Helix-turn-helix domain HTH_3 PF01381.22 55 KX686749_00010 - 314 5.4e-05 23.2 0.0 1 2 3.6e-07 0.00046 20.2 0.0 2 29 3 30 2 30 0.90 Helix-turn-helix HTH_3 PF01381.22 55 KX686749_00010 - 314 5.4e-05 23.2 0.0 2 2 0.67 8.6e+02 0.1 0.0 26 55 118 147 107 147 0.85 Helix-turn-helix Phage_CI_repr PF07022.13 65 KX686749_00010 - 314 0.0011 19.0 0.0 1 2 6.6e-05 0.084 13.0 0.0 11 49 10 47 2 50 0.77 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 KX686749_00010 - 314 0.0011 19.0 0.0 2 2 0.064 82 3.4 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 KX686749_00010 - 314 0.0078 15.7 0.0 1 2 8.2e-05 0.11 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 KX686749_00010 - 314 0.0078 15.7 0.0 2 2 0.29 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 KX686749_00010 - 314 0.015 15.4 0.0 1 1 2.9e-05 0.037 14.2 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 KX686749_00010 - 314 0.016 15.0 0.1 1 2 5.1e-05 0.065 13.1 0.0 4 36 5 37 2 49 0.75 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 KX686749_00010 - 314 0.016 15.0 0.1 2 2 2.5 3.2e+03 -1.9 0.1 38 47 290 299 289 300 0.87 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 KX686749_00010 - 314 0.019 14.7 0.0 1 1 3.5e-05 0.045 13.6 0.0 16 37 7 30 1 36 0.86 Homeodomain-like domain Imm3 PF14425.6 119 KX686749_00010 - 314 0.042 13.9 0.1 1 1 6.8e-05 0.087 12.9 0.1 33 113 26 104 2 109 0.75 Immunity protein Imm3 HTH_26 PF13443.6 63 KX686749_00010 - 314 0.071 13.6 0.0 1 1 0.00012 0.16 12.4 0.0 3 30 3 30 1 38 0.88 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.7 51 KX686749_00010 - 314 0.097 12.9 0.0 1 2 0.13 1.7e+02 2.5 0.0 5 16 3 14 2 16 0.90 Helix-turn-helix domain HTH_17 PF12728.7 51 KX686749_00010 - 314 0.097 12.9 0.0 2 2 0.0011 1.4 9.2 0.0 5 27 14 36 11 42 0.83 Helix-turn-helix domain HTH_31 PF13560.6 64 KX686749_00010 - 314 0.1 12.9 0.0 1 1 0.00016 0.2 12.0 0.0 12 33 8 29 2 40 0.88 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 KX686749_00010 - 314 0.13 11.9 0.0 1 1 0.00027 0.35 10.6 0.0 25 46 9 30 5 30 0.93 Sigma-70, region 4 Phage_AlpA PF05930.12 51 KX686749_00010 - 314 0.14 12.0 0.0 1 2 0.015 20 5.1 0.0 6 19 2 15 1 18 0.89 Prophage CP4-57 regulatory protein (AlpA) Phage_AlpA PF05930.12 51 KX686749_00010 - 314 0.14 12.0 0.0 2 2 0.0031 4 7.3 0.0 5 23 12 30 11 35 0.88 Prophage CP4-57 regulatory protein (AlpA) HTH_Mga PF08280.11 60 KX686749_00010 - 314 0.15 12.1 1.8 1 3 0.0044 5.6 7.1 0.1 21 37 11 27 4 30 0.89 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 KX686749_00010 - 314 0.15 12.1 1.8 2 3 0.065 83 3.3 0.0 25 59 41 75 32 76 0.80 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 KX686749_00010 - 314 0.15 12.1 1.8 3 3 9 1.2e+04 -3.5 0.0 46 50 94 98 86 105 0.47 M protein trans-acting positive regulator (MGA) HTH domain Relaxase PF03432.14 242 KX686749_00011 - 462 5.1e-10 39.4 7.2 1 2 2.9e-14 5.1e-10 39.4 7.2 48 228 119 296 70 309 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 KX686749_00011 - 462 5.1e-10 39.4 7.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 KX686749_00012 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 KX686749_00012 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 KX686749_00012 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 KX686749_00012 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 KX686749_00012 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 KX686749_00012 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 KX686749_00012 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 KX686749_00012 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 KX686749_00012 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 KX686749_00012 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 KX686749_00012 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain CdvA PF18822.1 123 KX686749_00013 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 KX686749_00013 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 KX686749_00013 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 KX686749_00013 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 KX686749_00013 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 KX686749_00015 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 KX686749_00015 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 KX686749_00015 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 KX686749_00015 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 KX686749_00015 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 KX686749_00016 - 97 0.007 16.3 0.0 1 1 1.7e-06 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) nec1 PF10379.9 184 KX686749_00016 - 97 0.067 12.7 0.0 1 1 1.1e-05 0.099 12.1 0.0 65 105 56 94 35 96 0.75 Virulence protein nec1 Sdh_cyt PF01127.22 121 KX686749_00017 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 KX686749_00017 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 KX686749_00017 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 KX686749_00019 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 KX686749_00020 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 KX686749_00021 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 KX686749_00021 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 KX686749_00021 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 KX686749_00021 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 KX686749_00021 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 KX686749_00021 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 KX686749_00021 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 KX686749_00021 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 KX686749_00021 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 KX686749_00021 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 KX686749_00021 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 KX686749_00021 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 KX686749_00021 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 KX686749_00022 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 KX686749_00022 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 KX686749_00022 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 KX686749_00022 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 KX686749_00022 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 KX686749_00022 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 KX686749_00022 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain CRISPR_Cas2 PF09827.9 76 KX686749_00023 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 KX686749_00023 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 TrbC PF04956.13 99 KX686749_00025 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 KX686749_00025 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 KX686749_00026 - 922 7e-51 173.3 0.4 1 1 1.8e-54 1.6e-50 172.1 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 KX686749_00026 - 922 3.6e-21 75.2 0.8 1 1 6.9e-25 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein Phage_pRha PF09669.10 88 KX686749_00027 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 KX686749_00027 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 KX686749_00027 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) PBECR2 PF18810.1 119 KX686749_00028 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 SSB PF00436.25 104 KX686749_00029 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 KX686749_00030 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 KX686749_00030 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 KX686749_00030 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 KX686749_00030 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 KX686749_00030 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 KX686749_00030 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 KX686749_00030 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 KX686749_00031 - 329 1.8e-28 100.3 13.3 1 1 5.5e-32 2.5e-28 99.9 13.3 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 KX686749_00031 - 329 0.0035 17.5 0.5 1 2 0.27 1.2e+03 -0.3 0.0 30 54 134 158 120 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 KX686749_00031 - 329 0.0035 17.5 0.5 2 2 4.7e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 KX686749_00031 - 329 0.017 15.7 0.9 1 2 1.3 6e+03 -2.1 0.0 55 70 124 139 101 163 0.57 von Willebrand factor type A domain VWA_2 PF13519.6 107 KX686749_00031 - 329 0.017 15.7 0.9 2 2 8.1e-06 0.036 14.7 0.2 31 84 208 270 197 307 0.84 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 KX686749_00031 - 329 0.5 11.1 11.4 1 2 0.042 1.9e+02 2.7 0.8 49 135 108 145 95 182 0.47 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 KX686749_00031 - 329 0.5 11.1 11.4 2 2 9.1e-05 0.41 11.3 4.5 49 116 225 306 205 328 0.68 Apoptosis antagonizing transcription factor TrbL PF04610.14 215 KX686749_00032 - 331 2.1e-30 106.1 33.3 1 2 3.5e-34 2.1e-30 106.1 33.3 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 KX686749_00032 - 331 2.1e-30 106.1 33.3 2 2 0.75 4.5e+03 -2.8 0.1 84 84 289 289 259 327 0.50 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 KX686749_00032 - 331 0.065 13.0 0.9 1 2 0.4 2.4e+03 -1.6 0.1 39 51 70 82 61 114 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 KX686749_00032 - 331 0.065 13.0 0.9 2 2 3.6e-05 0.22 11.4 0.1 37 81 243 287 222 299 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 KX686749_00032 - 331 0.17 11.9 0.0 1 1 5.1e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) Trep_dent_lipo PF09710.10 397 KX686749_00033 - 54 0.034 13.1 1.0 1 1 5.2e-06 0.031 13.2 1.0 3 25 3 24 1 53 0.80 Treponema clustered lipoprotein (Trep_dent_lipo) La_HTH_kDCL PF18177.1 90 KX686749_00033 - 54 0.19 12.0 0.0 1 1 3.6e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain PsbT PF01405.17 29 KX686749_00033 - 54 1.1 9.1 5.2 1 1 0.00027 1.6 8.6 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 KX686749_00034 - 219 1.6e-52 178.5 0.5 1 1 1.9e-56 1.7e-52 178.4 0.5 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 KX686749_00034 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 KX686749_00035 - 296 4.2e-56 190.0 1.7 1 1 1.1e-59 6.7e-56 189.3 1.7 2 211 31 271 30 271 0.92 Conjugal transfer protein TraE PF05309.11 182 KX686749_00035 - 296 0.022 14.2 0.1 1 1 6.6e-06 0.039 13.3 0.1 107 171 89 154 86 161 0.83 TraE protein Rho_RNA_bind PF07497.12 73 KX686749_00035 - 296 0.068 13.0 0.0 1 2 1.5 9.2e+03 -3.4 0.0 9 22 79 92 76 97 0.79 Rho termination factor, RNA-binding domain Rho_RNA_bind PF07497.12 73 KX686749_00035 - 296 0.068 13.0 0.0 2 2 3.3e-05 0.2 11.6 0.0 21 49 241 269 232 288 0.84 Rho termination factor, RNA-binding domain TrbI PF03743.14 187 KX686749_00036 - 393 7.4e-48 162.9 0.1 1 2 0.76 6.9e+03 -3.3 0.3 136 154 141 167 120 173 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 KX686749_00036 - 393 7.4e-48 162.9 0.1 2 2 8.2e-52 7.4e-48 162.9 0.1 1 187 196 377 196 377 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 KX686749_00036 - 393 0.044 12.9 0.1 1 1 7.7e-06 0.069 12.2 0.1 29 81 322 374 303 379 0.85 HaeIII restriction endonuclease T2SSE PF00437.20 273 KX686749_00037 - 335 7.7e-55 185.9 0.0 1 1 1.5e-57 8.9e-55 185.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 KX686749_00037 - 335 7.4e-05 23.3 0.0 1 1 2.6e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 KX686749_00037 - 335 0.00012 21.6 0.0 1 1 3e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 KX686749_00037 - 335 0.00028 20.5 0.0 1 1 8.8e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 KX686749_00037 - 335 0.0014 18.9 0.0 1 1 4.5e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 KX686749_00037 - 335 0.0014 18.4 0.0 1 1 3.9e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 KX686749_00037 - 335 0.0023 17.7 0.0 1 1 9.2e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 KX686749_00037 - 335 0.0035 17.3 0.0 1 1 1.2e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 KX686749_00037 - 335 0.0055 15.7 0.0 1 1 1.3e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 KX686749_00037 - 335 0.0073 16.2 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 KX686749_00037 - 335 0.0087 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 KX686749_00037 - 335 0.0092 15.9 0.0 1 1 2.3e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 KX686749_00037 - 335 0.019 15.1 0.0 1 1 6.1e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain AAA_14 PF13173.6 131 KX686749_00037 - 335 0.02 14.9 0.1 1 2 3 1.8e+03 -1.1 0.0 73 104 35 65 15 73 0.83 AAA domain AAA_14 PF13173.6 131 KX686749_00037 - 335 0.02 14.9 0.1 2 2 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain TrwB_AAD_bind PF10412.9 386 KX686749_00037 - 335 0.021 13.8 0.0 1 1 5.9e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.6 61 KX686749_00037 - 335 0.024 14.4 0.0 1 1 8.8e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain ResIII PF04851.15 171 KX686749_00037 - 335 0.026 14.5 0.0 1 1 9.1e-05 0.053 13.5 0.0 5 50 147 186 132 244 0.73 Type III restriction enzyme, res subunit Sigma54_activat PF00158.26 168 KX686749_00037 - 335 0.026 14.2 0.0 1 1 9.3e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 KX686749_00037 - 335 0.031 13.7 0.0 1 1 0.0001 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein ATP_bind_1 PF03029.17 241 KX686749_00037 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 KX686749_00037 - 335 0.045 14.1 0.0 1 1 0.00018 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 KX686749_00037 - 335 0.045 13.0 0.0 1 1 0.00013 0.077 12.3 0.0 14 49 158 193 146 207 0.84 Zeta toxin PRK PF00485.18 197 KX686749_00037 - 335 0.057 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 KX686749_00037 - 335 0.065 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 KX686749_00037 - 335 0.074 13.4 0.0 1 1 0.00019 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 KX686749_00037 - 335 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 KX686749_00037 - 335 0.1 12.6 0.5 1 1 0.00042 0.25 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 KX686749_00037 - 335 0.11 12.4 0.1 1 1 0.0004 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 KX686749_00037 - 335 0.15 11.7 0.0 1 1 0.00041 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 KX686749_00037 - 335 0.15 11.8 0.0 1 1 0.00042 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 KX686749_00037 - 335 0.44 11.0 4.2 1 2 2.5 1.5e+03 -0.5 0.1 68 130 84 150 40 162 0.62 AAA domain AAA_23 PF13476.6 200 KX686749_00037 - 335 0.44 11.0 4.2 2 2 0.00057 0.33 11.4 1.4 22 37 163 178 151 184 0.88 AAA domain T4SS-DNA_transf PF02534.14 469 KX686749_00038 - 603 8.4e-104 348.0 0.1 1 1 2.6e-107 1.1e-103 347.5 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 KX686749_00038 - 603 3.5e-24 85.2 0.0 1 1 1.5e-27 6.8e-24 84.3 0.0 2 125 406 528 405 529 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 KX686749_00038 - 603 3.2e-15 55.9 0.0 1 2 1.6e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 KX686749_00038 - 603 3.2e-15 55.9 0.0 2 2 1.3e-13 5.8e-10 38.6 0.0 187 369 347 531 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 KX686749_00038 - 603 0.19 11.8 0.2 1 1 7.4e-05 0.33 11.0 0.2 34 93 7 87 3 100 0.73 Putative Actinobacterial Holin-X, holin superfamily III Cag12 PF13117.6 97 KX686749_00039 - 143 2.9e-16 59.8 0.3 1 1 4.1e-20 3.7e-16 59.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 KX686749_00039 - 143 0.078 12.8 0.4 1 1 2.3e-05 0.2 11.4 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 KX686749_00040 - 252 3.9e-38 130.8 2.1 1 1 5.6e-42 5e-38 130.5 2.1 1 154 25 190 25 192 0.88 TrbM HpaB PF03241.13 202 KX686749_00040 - 252 0.17 10.9 0.1 1 2 0.047 4.2e+02 -0.1 0.0 20 39 17 36 4 37 0.76 4-hydroxyphenylacetate 3-hydroxylase C terminal HpaB PF03241.13 202 KX686749_00040 - 252 0.17 10.9 0.1 2 2 0.00011 1 8.4 0.0 56 101 116 161 102 164 0.88 4-hydroxyphenylacetate 3-hydroxylase C terminal PRELI PF04707.14 157 KX686749_00041 - 265 0.024 14.4 1.8 1 2 0.36 2.2e+03 -1.7 0.1 9 129 34 41 5 72 0.53 PRELI-like family PRELI PF04707.14 157 KX686749_00041 - 265 0.024 14.4 1.8 2 2 5.4e-06 0.032 14.0 0.3 96 155 83 147 78 149 0.87 PRELI-like family TACC_C PF05010.14 201 KX686749_00041 - 265 1.7 8.4 10.4 1 1 0.00054 3.2 7.5 8.6 14 125 2 112 1 137 0.78 Transforming acidic coiled-coil-containing protein (TACC), C-terminal IFT20 PF14931.6 119 KX686749_00041 - 265 3.6 7.8 9.8 1 3 0.08 4.8e+02 0.9 0.3 20 47 18 45 2 55 0.56 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 KX686749_00041 - 265 3.6 7.8 9.8 2 3 0.00021 1.3 9.2 0.8 25 54 89 118 79 126 0.89 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 KX686749_00041 - 265 3.6 7.8 9.8 3 3 0.026 1.6e+02 2.5 0.2 23 43 120 140 116 177 0.79 Intraflagellar transport complex B, subunit 20 CdhD PF03599.16 386 KX686749_00042 - 246 0.002 16.9 0.0 1 1 5.3e-07 0.0031 16.3 0.0 269 358 39 127 30 136 0.86 CO dehydrogenase/acetyl-CoA synthase delta subunit Pox_RNA_pol PF03293.14 160 KX686749_00042 - 246 0.012 15.3 0.9 1 1 4.5e-06 0.027 14.2 0.9 35 158 20 138 7 140 0.83 Poxvirus DNA-directed RNA polymerase, 18 kD subunit Redoxin PF08534.10 147 KX686749_00042 - 246 0.059 13.1 0.5 1 2 0.079 4.7e+02 0.4 0.0 117 146 49 76 31 77 0.79 Redoxin Redoxin PF08534.10 147 KX686749_00042 - 246 0.059 13.1 0.5 2 2 7.9e-05 0.47 10.2 0.1 49 76 184 213 178 230 0.79 Redoxin DUF1461 PF07314.11 189 KX686749_00043 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) Topoisom_bac PF01131.20 413 KX686749_00044 - 730 1.2e-96 324.2 8.2 1 1 1.5e-99 1.7e-96 323.8 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 KX686749_00044 - 730 1.8e-12 47.4 0.5 1 2 8.7e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 KX686749_00044 - 730 1.8e-12 47.4 0.5 2 2 3.9 4.4e+03 -2.0 0.0 38 56 537 556 489 567 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 KX686749_00044 - 730 1.6e-08 34.1 15.1 1 2 3.7e-09 4.1e-06 26.5 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 KX686749_00044 - 730 1.6e-08 34.1 15.1 2 2 8.7e-05 0.098 12.5 2.4 3 27 683 710 681 719 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 KX686749_00044 - 730 1e-05 25.7 2.3 1 3 8.3 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 KX686749_00044 - 730 1e-05 25.7 2.3 2 3 0.00037 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 KX686749_00044 - 730 1e-05 25.7 2.3 3 3 3.8e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 KX686749_00044 - 730 0.012 15.7 1.3 1 2 0.0077 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 KX686749_00044 - 730 0.012 15.7 1.3 2 2 0.0045 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 KX686749_00044 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KX686749_00044 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KX686749_00044 - 730 0.056 14.3 2.8 1 2 0.007 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KX686749_00044 - 730 0.056 14.3 2.8 2 2 0.021 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 KX686749_00044 - 730 0.087 12.3 2.7 1 2 0.003 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 KX686749_00044 - 730 0.087 12.3 2.7 2 2 0.02 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 KX686749_00044 - 730 0.088 13.1 4.5 1 2 0.00079 0.88 9.9 3.7 5 64 627 689 623 696 0.71 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 KX686749_00044 - 730 0.088 13.1 4.5 2 2 0.0023 2.6 8.4 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain EF-hand_8 PF13833.6 55 KX686749_00044 - 730 0.088 12.7 0.0 1 1 0.00027 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 KX686749_00044 - 730 0.46 10.7 3.3 1 3 1.7 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 KX686749_00044 - 730 0.46 10.7 3.3 2 3 5 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 KX686749_00044 - 730 0.46 10.7 3.3 3 3 0.00076 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 KX686749_00044 - 730 0.55 9.9 3.0 1 2 0.03 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 KX686749_00044 - 730 0.55 9.9 3.0 2 2 0.011 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 KX686749_00044 - 730 0.63 10.0 3.8 1 2 0.0041 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 KX686749_00044 - 730 0.63 10.0 3.8 2 2 0.13 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 KX686749_00044 - 730 0.75 9.9 3.8 1 2 0.1 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 KX686749_00044 - 730 0.75 9.9 3.8 2 2 0.0039 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 KX686749_00044 - 730 6.9 6.5 8.0 1 2 0.046 51 3.7 2.5 15 31 629 645 627 660 0.79 PADR1 (NUC008) domain PADR1 PF08063.12 53 KX686749_00044 - 730 6.9 6.5 8.0 2 2 0.016 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 KX686749_00044 - 730 8.4 6.4 6.5 1 2 0.01 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 KX686749_00044 - 730 8.4 6.4 6.5 2 2 0.088 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 KX686749_00045 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 KX686749_00045 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 KX686749_00047 - 639 2.9e-58 196.6 0.3 1 1 2e-61 4.1e-58 196.1 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 KX686749_00047 - 639 2.6e-23 82.1 0.0 1 2 1.4 2.8e+03 -1.9 0.0 81 97 63 79 58 99 0.70 Elongation factor G, domain IV EFG_IV PF03764.18 121 KX686749_00047 - 639 2.6e-23 82.1 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 KX686749_00047 - 639 1.1e-16 60.6 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 KX686749_00047 - 639 2.2e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 KX686749_00047 - 639 1e-06 28.8 0.1 1 1 1.2e-09 2.4e-06 27.6 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 KX686749_00047 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 KX686749_00047 - 639 0.0095 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 KX686749_00047 - 639 0.021 14.1 0.1 1 1 2e-05 0.039 13.2 0.1 9 76 8 82 3 90 0.72 Septin AIG1 PF04548.16 212 KX686749_00047 - 639 0.045 13.1 0.0 1 1 5.4e-05 0.11 11.8 0.0 32 62 51 81 43 109 0.83 AIG1 family CPT PF07931.12 174 KX686749_00048 - 152 9.2e-06 25.6 0.0 1 1 2.5e-09 1.1e-05 25.3 0.0 59 172 26 143 5 145 0.81 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 130 KX686749_00048 - 152 1.2e-05 25.9 0.0 1 1 3.5e-09 1.6e-05 25.5 0.0 44 124 15 106 2 112 0.79 AAA domain AAA_33 PF13671.6 143 KX686749_00048 - 152 0.019 15.1 0.0 1 1 6.4e-06 0.029 14.5 0.0 55 136 35 115 4 117 0.79 AAA domain MKT1_N PF12247.8 90 KX686749_00048 - 152 0.041 14.2 0.0 1 1 4.2e-05 0.19 12.1 0.0 14 51 10 45 8 122 0.88 Temperature dependent protein affecting M2 dsRNA replication APH PF01636.23 240 KX686749_00049 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 KX686749_00049 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 KX686749_00049 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 KX686749_00049 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 KX686749_00049 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 KX686749_00049 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 KX686749_00050 - 139 2.2e-51 174.9 0.1 1 1 1.4e-55 2.4e-51 174.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase Adenyl_transf PF04439.12 279 KX686749_00051 - 137 1.1e-35 123.2 0.1 1 1 3.2e-38 1.3e-35 122.9 0.1 139 223 42 126 18 134 0.90 Streptomycin adenylyltransferase Zeta_toxin PF06414.12 199 KX686749_00051 - 137 3.2e-06 26.6 0.0 1 1 8.8e-09 3.5e-06 26.4 0.0 18 60 6 47 2 88 0.88 Zeta toxin AAA_22 PF13401.6 137 KX686749_00051 - 137 3.4e-06 27.4 0.0 1 1 9.3e-09 3.7e-06 27.3 0.0 4 57 3 58 1 96 0.84 AAA domain AAA PF00004.29 132 KX686749_00051 - 137 1.6e-05 25.3 0.0 1 1 5.9e-08 2.4e-05 24.8 0.0 2 25 8 31 7 94 0.70 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 163 KX686749_00051 - 137 2.2e-05 24.7 0.0 1 1 7.8e-08 3.1e-05 24.3 0.0 2 22 7 27 6 70 0.78 AAA domain AAA_18 PF13238.6 130 KX686749_00051 - 137 3.3e-05 24.4 0.0 1 1 9.4e-08 3.8e-05 24.3 0.0 1 40 7 45 7 94 0.74 AAA domain AAA_33 PF13671.6 143 KX686749_00051 - 137 9.9e-05 22.5 0.0 1 1 2.9e-07 0.00011 22.3 0.0 2 69 7 75 6 97 0.80 AAA domain AAA_16 PF13191.6 170 KX686749_00051 - 137 0.00015 22.2 0.0 1 1 4.8e-07 0.00019 21.9 0.0 22 63 2 44 1 97 0.70 AAA ATPase domain DUF2075 PF09848.9 363 KX686749_00051 - 137 0.0011 18.4 0.0 1 1 3.4e-06 0.0014 18.0 0.0 2 27 5 32 4 49 0.80 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 197 KX686749_00051 - 137 0.0011 18.7 0.0 1 1 2.9e-06 0.0012 18.7 0.0 3 56 5 61 3 123 0.74 AAA domain AAA_19 PF13245.6 146 KX686749_00051 - 137 0.0014 19.0 0.0 1 1 5.4e-06 0.0021 18.4 0.0 9 39 3 33 1 51 0.84 AAA domain AAA_14 PF13173.6 131 KX686749_00051 - 137 0.0015 18.6 0.0 1 1 3.7e-06 0.0015 18.6 0.0 2 51 4 53 3 130 0.69 AAA domain KTI12 PF08433.10 272 KX686749_00051 - 137 0.0015 18.1 0.0 1 1 3.9e-06 0.0016 18.0 0.0 3 42 6 46 5 92 0.84 Chromatin associated protein KTI12 ABC_tran PF00005.27 137 KX686749_00051 - 137 0.0015 19.1 0.0 1 1 5.4e-06 0.0021 18.6 0.0 9 51 2 43 1 70 0.82 ABC transporter AAA_30 PF13604.6 192 KX686749_00051 - 137 0.002 17.8 0.2 1 1 6.8e-06 0.0027 17.5 0.2 17 40 3 26 1 38 0.83 AAA domain TIP49 PF06068.13 351 KX686749_00051 - 137 0.0023 17.2 0.0 1 1 8.3e-06 0.0033 16.7 0.0 50 95 4 48 1 52 0.80 TIP49 P-loop domain NTPase_1 PF03266.15 168 KX686749_00051 - 137 0.0032 17.4 0.1 1 1 1.3e-05 0.005 16.8 0.1 2 41 7 49 6 58 0.73 NTPase ATPase PF06745.13 231 KX686749_00051 - 137 0.0062 15.9 0.0 1 1 2.1e-05 0.0084 15.5 0.0 18 38 3 23 1 57 0.89 KaiC T2SSE PF00437.20 273 KX686749_00051 - 137 0.0079 15.3 0.0 1 1 2.4e-05 0.0094 15.0 0.0 130 156 5 31 1 53 0.79 Type II/IV secretion system protein SRP54 PF00448.22 196 KX686749_00051 - 137 0.014 15.0 0.0 1 1 5.6e-05 0.022 14.4 0.0 3 40 6 42 4 45 0.81 SRP54-type protein, GTPase domain RNA_helicase PF00910.22 107 KX686749_00051 - 137 0.019 15.3 0.0 1 1 7.9e-05 0.032 14.6 0.0 1 36 7 43 7 74 0.67 RNA helicase NACHT PF05729.12 166 KX686749_00051 - 137 0.021 14.7 0.1 1 1 0.00013 0.053 13.4 0.1 1 28 5 32 5 98 0.82 NACHT domain Hydin_ADK PF17213.3 198 KX686749_00051 - 137 0.026 14.8 0.2 1 1 9e-05 0.036 14.4 0.2 2 22 7 27 6 31 0.92 Hydin Adenylate kinase-like domain Viral_helicase1 PF01443.18 234 KX686749_00051 - 137 0.03 14.1 0.0 1 1 9.6e-05 0.038 13.7 0.0 1 38 7 40 7 61 0.73 Viral (Superfamily 1) RNA helicase RuvB_N PF05496.12 159 KX686749_00051 - 137 0.032 14.0 0.0 1 1 0.00015 0.058 13.1 0.0 36 59 7 30 3 39 0.84 Holliday junction DNA helicase RuvB P-loop domain CPT PF07931.12 174 KX686749_00051 - 137 0.032 14.1 0.0 1 1 0.00012 0.047 13.5 0.0 1 40 4 44 4 75 0.85 Chloramphenicol phosphotransferase-like protein AAA_25 PF13481.6 194 KX686749_00051 - 137 0.034 13.7 0.1 1 1 0.00012 0.047 13.3 0.1 32 54 3 25 1 28 0.88 AAA domain NB-ARC PF00931.22 252 KX686749_00051 - 137 0.035 13.3 0.0 1 1 0.00012 0.046 12.9 0.0 21 47 5 30 1 46 0.84 NB-ARC domain AAA_11 PF13086.6 261 KX686749_00051 - 137 0.036 13.9 0.0 1 1 0.0001 0.04 13.7 0.0 16 41 3 28 1 65 0.79 AAA domain DnaB_C PF03796.15 255 KX686749_00051 - 137 0.039 13.3 0.0 1 1 0.00013 0.052 12.9 0.0 17 47 2 32 1 41 0.84 DnaB-like helicase C terminal domain AAA_7 PF12775.7 181 KX686749_00051 - 137 0.047 13.2 0.0 1 1 0.0002 0.08 12.5 0.0 31 64 2 35 1 45 0.84 P-loop containing dynein motor region ATPase_2 PF01637.18 233 KX686749_00051 - 137 0.048 13.6 0.0 1 1 0.00013 0.051 13.5 0.0 19 70 3 59 1 125 0.76 ATPase domain predominantly from Archaea PhoH PF02562.16 205 KX686749_00051 - 137 0.053 13.0 0.4 1 2 0.00029 0.12 11.9 0.1 18 43 3 28 1 36 0.81 PhoH-like protein PhoH PF02562.16 205 KX686749_00051 - 137 0.053 13.0 0.4 2 2 4.3 1.7e+03 -1.7 0.0 189 200 85 96 71 100 0.75 PhoH-like protein Rad17 PF03215.15 186 KX686749_00051 - 137 0.054 13.4 0.0 1 1 0.00018 0.071 13.0 0.0 45 70 4 29 1 61 0.84 Rad17 P-loop domain AAA_17 PF13207.6 136 KX686749_00051 - 137 0.066 13.6 0.0 1 1 0.00025 0.099 13.1 0.0 1 21 10 30 10 56 0.86 AAA domain IstB_IS21 PF01695.17 178 KX686749_00051 - 137 0.082 12.6 0.0 1 1 0.0003 0.12 12.1 0.0 48 70 5 27 1 43 0.85 IstB-like ATP binding protein Ploopntkinase3 PF18751.1 185 KX686749_00051 - 137 0.091 12.7 0.0 1 1 0.00032 0.13 12.2 0.0 3 43 4 45 1 54 0.76 P-loop Nucleotide Kinase3 ATP-synt_ab PF00006.25 213 KX686749_00051 - 137 0.11 12.2 0.0 1 1 0.00027 0.11 12.2 0.0 12 43 2 32 1 130 0.81 ATP synthase alpha/beta family, nucleotide-binding domain APS_kinase PF01583.20 158 KX686749_00051 - 137 0.11 12.4 0.0 1 1 0.00042 0.17 11.8 0.0 1 26 3 28 3 49 0.82 Adenylylsulphate kinase IPT PF01745.16 233 KX686749_00051 - 137 0.14 11.5 0.2 1 1 0.00053 0.21 10.9 0.2 3 25 6 28 4 34 0.89 Isopentenyl transferase AAA_3 PF07726.11 131 KX686749_00051 - 137 0.16 11.8 0.0 1 1 0.00056 0.22 11.4 0.0 2 34 7 39 6 50 0.84 ATPase family associated with various cellular activities (AAA) GvpD PF07088.11 484 KX686749_00051 - 137 0.16 10.6 0.0 1 1 0.00062 0.25 9.9 0.0 9 26 3 20 1 42 0.86 GvpD gas vesicle protein Sigma54_activat PF00158.26 168 KX686749_00051 - 137 0.17 11.6 0.0 1 1 0.0006 0.24 11.1 0.0 25 51 7 33 1 41 0.83 Sigma-54 interaction domain ArsA_ATPase PF02374.15 305 KX686749_00051 - 137 0.17 11.0 0.0 1 1 0.00056 0.22 10.7 0.0 2 28 5 30 4 43 0.81 Anion-transporting ATPase cobW PF02492.19 177 KX686749_00051 - 137 0.18 11.4 0.0 1 1 0.00054 0.22 11.1 0.0 2 31 6 36 5 61 0.75 CobW/HypB/UreG, nucleotide-binding domain APH PF01636.23 240 KX686749_00052 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 KX686749_00052 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 KX686749_00052 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 KX686749_00052 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family Radical_SAM PF04055.21 167 KX686749_00053 - 379 1.3e-14 55.0 0.0 1 1 4.3e-18 2.6e-14 54.0 0.0 2 160 102 261 101 266 0.87 Radical SAM superfamily Fer4_14 PF13394.6 118 KX686749_00053 - 379 4.9e-05 23.4 0.0 1 2 6.1e-08 0.00037 20.6 0.0 6 87 105 185 101 207 0.76 4Fe-4S single cluster domain Fer4_14 PF13394.6 118 KX686749_00053 - 379 4.9e-05 23.4 0.0 2 2 0.19 1.1e+03 -0.3 0.0 60 96 297 333 293 358 0.63 4Fe-4S single cluster domain Fer4_12 PF13353.6 139 KX686749_00053 - 379 0.048 13.9 0.2 1 1 1.6e-05 0.098 12.9 0.2 11 75 103 165 93 194 0.79 4Fe-4S single cluster domain APH PF01636.23 240 KX931103_00001 - 297 1.9e-24 86.9 0.0 1 1 2.9e-28 2.6e-24 86.5 0.0 5 239 21 252 18 253 0.88 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 KX931103_00001 - 297 0.0013 18.3 1.5 1 2 1.5e-07 0.0013 18.3 1.5 67 175 111 211 89 225 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 KX931103_00001 - 297 0.0013 18.3 1.5 2 2 0.46 4.1e+03 -2.9 0.0 24 24 256 256 238 296 0.47 Choline/ethanolamine kinase APH PF01636.23 240 KX931104_00001 - 297 1.9e-24 86.9 0.0 1 1 2.9e-28 2.6e-24 86.5 0.0 5 239 21 252 18 253 0.88 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 KX931104_00001 - 297 0.0013 18.3 1.5 1 2 1.5e-07 0.0013 18.3 1.5 67 175 111 211 89 225 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 KX931104_00001 - 297 0.0013 18.3 1.5 2 2 0.46 4.1e+03 -2.9 0.0 24 24 256 256 238 296 0.47 Choline/ethanolamine kinase LysE PF01810.18 193 MLDY01000008_00001 - 72 5.6e-05 22.7 0.0 1 1 2.2e-08 6.7e-05 22.4 0.0 36 94 5 63 3 70 0.90 LysE type translocator DUF1516 PF07457.11 108 MLDY01000008_00001 - 72 0.002 18.3 0.3 1 1 7.1e-07 0.0021 18.2 0.3 39 83 7 49 1 61 0.82 Protein of unknown function (DUF1516) TerC PF03741.16 181 MLDY01000008_00001 - 72 0.041 13.6 0.3 1 1 1.6e-05 0.047 13.4 0.3 39 90 8 60 3 70 0.73 Integral membrane protein TerC family DUF5305 PF17231.2 219 MLDY01000008_00001 - 72 0.077 12.4 0.6 1 2 0.24 7.2e+02 -0.6 0.0 116 136 6 26 2 29 0.75 Family of unknown function (DUF5305) DUF5305 PF17231.2 219 MLDY01000008_00001 - 72 0.077 12.4 0.6 2 2 3.4e-05 0.1 12.0 0.2 114 157 25 69 19 72 0.76 Family of unknown function (DUF5305) Saf_2TM PF18303.1 152 MLDY01000008_00001 - 72 0.11 12.1 0.8 1 2 0.3 9.1e+02 -0.6 0.0 65 82 5 22 2 29 0.49 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 MLDY01000008_00001 - 72 0.11 12.1 0.8 2 2 4.5e-05 0.13 11.8 0.3 61 99 22 62 15 67 0.72 SAVED-fused 2TM effector domain PetL PF05115.14 31 MLDY01000008_00001 - 72 3.4 7.7 9.7 1 2 0.011 33 4.6 1.8 10 29 6 25 4 25 0.84 Cytochrome B6-F complex subunit VI (PetL) PetL PF05115.14 31 MLDY01000008_00001 - 72 3.4 7.7 9.7 2 2 0.0013 4 7.5 1.2 8 25 28 44 27 50 0.83 Cytochrome B6-F complex subunit VI (PetL) Flp1_like PF16982.5 49 MLDY01000008_00002 - 132 0.015 14.7 2.9 1 3 1.7e-06 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 MLDY01000008_00002 - 132 0.015 14.7 2.9 2 3 1.2 1e+04 -4.0 0.3 16 22 67 73 66 76 0.49 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 MLDY01000008_00002 - 132 0.015 14.7 2.9 3 3 0.91 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain BRI3BP PF14965.6 180 MLDY01000008_00002 - 132 0.26 10.8 3.9 1 1 3.1e-05 0.28 10.7 3.5 59 106 51 101 32 120 0.81 Negative regulator of p53/TP53 YopX PF09643.10 131 MLDY01000008_00004 - 148 1.9e-14 53.8 7.2 1 1 5.2e-17 4.7e-13 49.3 7.2 28 131 30 142 7 142 0.59 YopX protein RE_ApaLI PF09499.10 189 MLDY01000008_00004 - 148 0.0081 15.9 0.6 1 1 9.3e-07 0.0083 15.9 0.6 48 117 58 129 21 148 0.79 ApaLI-like restriction endonuclease DUF2583 PF10762.9 88 MLDY01000008_00006 - 117 0.67 10.4 3.8 1 2 0.00097 17 5.9 0.8 15 58 3 46 1 53 0.84 Protein of unknown function (DUF2583) DUF2583 PF10762.9 88 MLDY01000008_00006 - 117 0.67 10.4 3.8 2 2 0.00084 15 6.1 0.7 14 58 48 98 43 102 0.75 Protein of unknown function (DUF2583) Topoisom_bac PF01131.20 413 MLDY01000008_00009 - 730 3.9e-97 325.9 7.9 1 1 4.8e-100 5.4e-97 325.4 7.9 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 MLDY01000008_00009 - 730 1.9e-12 47.3 0.4 1 2 9.2e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 MLDY01000008_00009 - 730 1.9e-12 47.3 0.4 2 2 3.9 4.4e+03 -2.0 0.0 38 56 537 556 489 567 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 MLDY01000008_00009 - 730 1.6e-08 34.1 15.1 1 2 3.7e-09 4.1e-06 26.5 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 MLDY01000008_00009 - 730 1.6e-08 34.1 15.1 2 2 8.7e-05 0.098 12.5 2.4 3 27 683 710 681 719 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 MLDY01000008_00009 - 730 1e-05 25.7 2.3 1 3 8.3 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 MLDY01000008_00009 - 730 1e-05 25.7 2.3 2 3 0.00037 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 MLDY01000008_00009 - 730 1e-05 25.7 2.3 3 3 3.8e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 MLDY01000008_00009 - 730 0.012 15.7 1.3 1 2 0.0077 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MLDY01000008_00009 - 730 0.012 15.7 1.3 2 2 0.0045 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 MLDY01000008_00009 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MLDY01000008_00009 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 MLDY01000008_00009 - 730 0.055 14.3 2.8 1 2 0.007 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MLDY01000008_00009 - 730 0.055 14.3 2.8 2 2 0.021 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 MLDY01000008_00009 - 730 0.087 12.3 2.7 1 2 0.003 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 MLDY01000008_00009 - 730 0.087 12.3 2.7 2 2 0.02 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 MLDY01000008_00009 - 730 0.089 12.7 0.0 1 1 0.00027 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 MLDY01000008_00009 - 730 0.089 13.1 4.5 1 2 0.00079 0.88 9.9 3.7 5 64 627 689 623 696 0.71 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 MLDY01000008_00009 - 730 0.089 13.1 4.5 2 2 0.0023 2.6 8.4 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 MLDY01000008_00009 - 730 0.44 10.8 3.3 1 3 1.7 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 MLDY01000008_00009 - 730 0.44 10.8 3.3 2 3 5 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 MLDY01000008_00009 - 730 0.44 10.8 3.3 3 3 0.00076 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 MLDY01000008_00009 - 730 0.55 9.9 3.0 1 2 0.03 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MLDY01000008_00009 - 730 0.55 9.9 3.0 2 2 0.011 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 MLDY01000008_00009 - 730 0.63 10.0 3.8 1 2 0.0041 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 MLDY01000008_00009 - 730 0.63 10.0 3.8 2 2 0.13 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 MLDY01000008_00009 - 730 0.73 9.9 3.8 1 2 0.1 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MLDY01000008_00009 - 730 0.73 9.9 3.8 2 2 0.0039 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 MLDY01000008_00009 - 730 7 6.5 8.0 1 2 0.046 51 3.7 2.5 15 31 629 645 627 660 0.79 PADR1 (NUC008) domain PADR1 PF08063.12 53 MLDY01000008_00009 - 730 7 6.5 8.0 2 2 0.016 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 MLDY01000008_00009 - 730 8.4 6.4 6.5 1 2 0.01 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 MLDY01000008_00009 - 730 8.4 6.4 6.5 2 2 0.088 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 MLDY01000008_00010 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 MLDY01000008_00010 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 MLDY01000008_00012 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 MLDY01000008_00012 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 MLDY01000008_00012 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 MLDY01000008_00012 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 MLDY01000008_00012 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 MLDY01000008_00012 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 MLDY01000008_00013 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 MLDY01000008_00014 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 MLDY01000008_00014 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 MLDY01000008_00014 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 MLDY01000008_00014 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 MLDY01000008_00014 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 MLDY01000008_00015 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 MLDY01000008_00015 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 MLDY01000008_00015 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 MLDY01000008_00015 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 MLDY01000008_00015 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 MLDY01000008_00016 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 MLDY01000008_00016 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 MLDY01000008_00016 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 MLDY01000008_00016 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 MLDY01000008_00016 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 MLDY01000008_00016 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 MLDY01000008_00016 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 MLDY01000008_00016 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 MLDY01000008_00016 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 MLDY01000008_00016 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 MLDY01000008_00016 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 MLDY01000008_00016 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 MLDY01000008_00016 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 MLDY01000008_00016 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 MLDY01000008_00016 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 MLDY01000008_00016 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 MLDY01000008_00016 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 MLDY01000008_00016 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 MLDY01000008_00016 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 MLDY01000008_00016 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 MLDY01000008_00016 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 MLDY01000008_00016 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 MLDY01000008_00016 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 MLDY01000008_00016 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 MLDY01000008_00016 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 MLDY01000008_00016 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 MLDY01000008_00016 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 MLDY01000008_00016 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 MLDY01000008_00016 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 MLDY01000008_00016 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 MLDY01000008_00016 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 MLDY01000008_00016 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 MLDY01000008_00017 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 MLDY01000008_00017 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 MLDY01000008_00018 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 MLDY01000008_00018 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 MLDY01000008_00018 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 MLDY01000008_00019 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 MLDY01000008_00019 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 MLDY01000008_00020 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 MLDY01000008_00020 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 MLDY01000008_00021 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 MLDY01000008_00021 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 MLDY01000008_00021 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 MLDY01000008_00021 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 MLDY01000008_00021 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 MLDY01000008_00022 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 MLDY01000008_00022 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 MLDY01000008_00022 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 MLDY01000008_00022 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 MLDY01000008_00022 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 MLDY01000008_00022 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 MLDY01000008_00022 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 MLDY01000008_00022 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 MLDY01000008_00022 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 MLDY01000008_00022 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 MLDY01000008_00022 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 MLDY01000008_00022 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 MLDY01000008_00022 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 MLDY01000008_00022 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 MLDY01000008_00022 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain IF2_N PF04760.15 54 MLDY01000008_00023 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 MLDY01000008_00023 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 MLDY01000008_00023 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 MLDY01000008_00023 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 MLDY01000008_00023 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 MLDY01000008_00023 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 MLDY01000008_00023 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 MLDY01000008_00024 - 141 1.5e-25 89.2 0.1 1 1 1e-29 1.8e-25 88.9 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3895 PF13034.6 76 MLDY01000008_00025 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 MLDY01000008_00025 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) Phage_pRha PF09669.10 88 MLDY01000008_00026 - 185 6.7e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 MLDY01000008_00026 - 185 0.0015 18.6 0.0 1 1 8.6e-07 0.0031 17.6 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 MLDY01000008_00026 - 185 0.026 14.1 0.3 1 2 0.05 1.8e+02 1.6 0.1 80 118 33 71 5 80 0.74 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 MLDY01000008_00026 - 185 0.026 14.1 0.3 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 MLDY01000008_00026 - 185 0.081 12.9 0.1 1 1 6.1e-05 0.22 11.5 0.0 77 131 80 130 69 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 MLDY01000008_00026 - 185 0.83 9.7 7.1 1 3 0.019 69 3.6 0.1 40 53 12 25 3 29 0.83 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 MLDY01000008_00026 - 185 0.83 9.7 7.1 2 3 0.0022 7.9 6.6 0.9 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 MLDY01000008_00026 - 185 0.83 9.7 7.1 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 CagE_TrbE_VirB PF03135.14 206 MLDY01000008_00027 - 922 4.1e-51 174.0 0.4 1 1 2e-54 9.1e-51 172.9 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 MLDY01000008_00027 - 922 7.7e-21 74.1 0.9 1 1 3.1e-24 1.4e-20 73.3 0.9 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 MLDY01000008_00027 - 922 2.9e-07 29.8 0.9 1 1 1.5e-10 6.6e-07 28.6 0.9 23 321 547 846 542 860 0.73 AAA-like domain DUF87 PF01935.17 227 MLDY01000008_00027 - 922 0.013 15.6 3.4 1 5 0.67 3e+03 -1.9 0.2 134 201 188 252 133 281 0.47 Helicase HerA, central domain DUF87 PF01935.17 227 MLDY01000008_00027 - 922 0.013 15.6 3.4 2 5 0.9 4e+03 -2.4 0.0 87 124 263 298 243 301 0.77 Helicase HerA, central domain DUF87 PF01935.17 227 MLDY01000008_00027 - 922 0.013 15.6 3.4 3 5 0.00034 1.5 8.8 0.0 26 49 548 571 539 598 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 MLDY01000008_00027 - 922 0.013 15.6 3.4 4 5 0.0067 30 4.6 0.1 100 163 638 700 610 731 0.79 Helicase HerA, central domain DUF87 PF01935.17 227 MLDY01000008_00027 - 922 0.013 15.6 3.4 5 5 0.36 1.6e+03 -1.1 0.0 43 108 751 811 747 910 0.65 Helicase HerA, central domain TrbC PF04956.13 99 MLDY01000008_00028 - 87 6.2e-13 48.8 6.8 1 1 7.4e-17 6.6e-13 48.7 6.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 MLDY01000008_00028 - 87 0.61 9.9 6.3 1 1 0.00015 1.3 8.9 6.2 108 135 60 87 10 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 MLDY01000008_00030 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 MLDY01000008_00030 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 Resolvase PF00239.21 146 MLDY01000008_00031 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 MLDY01000008_00031 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 MLDY01000008_00031 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 MLDY01000008_00031 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 MLDY01000008_00031 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 MLDY01000008_00031 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 MLDY01000008_00031 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain AAA_25 PF13481.6 194 MLDY01000008_00032 - 597 5.4e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 MLDY01000008_00032 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 MLDY01000008_00032 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 MLDY01000008_00032 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 MLDY01000008_00032 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 MLDY01000008_00032 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 MLDY01000008_00032 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 MLDY01000008_00032 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 MLDY01000008_00032 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 MLDY01000008_00032 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 MLDY01000008_00032 - 597 0.37 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 MLDY01000008_00032 - 597 0.37 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 MLDY01000008_00032 - 597 0.37 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) HicA_toxin PF07927.12 58 MLDY01000008_00033 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 MLDY01000008_00034 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 MLDY01000008_00036 - 92 0.0052 16.8 2.6 1 1 7.7e-07 0.0069 16.4 2.6 34 88 27 83 25 86 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2633 PF11119.8 57 MLDY01000008_00036 - 92 0.56 10.1 4.1 1 2 0.44 4e+03 -2.2 0.0 8 15 7 14 5 18 0.76 Protein of unknown function (DUF2633) DUF2633 PF11119.8 57 MLDY01000008_00036 - 92 0.56 10.1 4.1 2 2 0.00023 2 8.4 4.2 11 33 34 57 27 60 0.83 Protein of unknown function (DUF2633) UBA_6 PF18039.1 42 MLDY01000008_00037 - 35 0.027 14.4 0.0 1 1 4.8e-06 0.028 14.3 0.0 4 28 2 26 1 31 0.92 UBA-like domain DUF3606 PF12244.8 54 MLDY01000008_00037 - 35 0.045 13.7 0.0 1 1 7.6e-06 0.045 13.7 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 MLDY01000008_00037 - 35 0.068 13.6 0.0 1 1 1.1e-05 0.068 13.6 0.0 1 22 1 22 1 33 0.95 Cell division protein ZapB DUF4223 PF13978.6 54 MLDY01000008_00038 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 MLDY01000008_00038 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) Toprim_3 PF13362.6 95 MLDY01000008_00039 - 408 2.1e-08 34.4 0.0 1 1 6.4e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Toprim_4 PF13662.6 89 MLDY01000008_00039 - 408 0.14 12.7 0.1 1 1 5.1e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 MLDY01000008_00039 - 408 0.19 12.3 4.2 1 2 0.023 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 MLDY01000008_00039 - 408 0.19 12.3 4.2 2 2 0.00023 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF2004 PF09406.10 106 MLDY01000008_00040 - 219 0.12 12.7 3.0 1 2 3.5e-05 0.62 10.4 1.0 9 78 46 117 40 128 0.90 Protein of unknown function (DUF2004) DUF2004 PF09406.10 106 MLDY01000008_00040 - 219 0.12 12.7 3.0 2 2 0.014 2.4e+02 2.1 0.0 36 78 164 209 131 213 0.86 Protein of unknown function (DUF2004) Sds3 PF08598.11 218 MLDY01000008_00042 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 MLDY01000008_00042 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 MLDY01000008_00042 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 MLDY01000008_00042 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 MLDY01000008_00042 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 MLDY01000008_00043 - 183 0.00011 22.1 5.7 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 MLDY01000008_00043 - 183 0.00011 22.1 5.7 2 3 0.49 1.8e+03 -0.9 0.0 21 36 77 92 71 97 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 MLDY01000008_00043 - 183 0.00011 22.1 5.7 3 3 1.9e-05 0.067 13.2 0.7 15 62 107 156 95 161 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 MLDY01000008_00043 - 183 0.058 13.5 1.9 1 1 2.4e-05 0.087 12.9 1.4 56 131 20 103 9 116 0.67 Stage III sporulation protein AB (spore_III_AB) DndE PF08870.11 112 MLDY01000008_00043 - 183 0.31 11.3 5.7 1 2 0.075 2.7e+02 1.9 0.1 2 22 9 29 8 37 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 MLDY01000008_00043 - 183 0.31 11.3 5.7 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 MLDY01000008_00043 - 183 0.53 10.6 5.9 1 2 0.0007 2.5 8.5 2.0 14 90 6 82 3 98 0.74 NLRC4 helical domain NLRC4_HD PF17889.1 107 MLDY01000008_00043 - 183 0.53 10.6 5.9 2 2 0.017 60 4.0 0.1 45 88 102 143 96 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 MLDY01000008_00043 - 183 2 8.5 7.9 1 3 0.29 1e+03 -0.2 0.1 40 55 12 27 4 56 0.73 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 MLDY01000008_00043 - 183 2 8.5 7.9 2 3 0.061 2.2e+02 2.0 0.5 10 46 55 91 50 97 0.85 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 MLDY01000008_00043 - 183 2 8.5 7.9 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 Relaxase PF03432.14 242 MLDY01000008_00044 - 462 4.3e-09 36.3 8.2 1 2 2.4e-13 4.3e-09 36.3 8.2 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 MLDY01000008_00044 - 462 4.3e-09 36.3 8.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain DUF2768 PF10966.8 58 MLDY01000008_00045 - 235 0.053 14.0 0.6 1 1 5.9e-06 0.11 13.0 0.6 23 52 204 233 202 234 0.91 Protein of unknown function (DUF2768) SNF2_N PF00176.23 350 MLDY01000008_00046 - 1932 3e-16 59.1 1.8 1 3 1.4e-19 5.1e-16 58.3 0.1 58 245 1018 1272 957 1313 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 MLDY01000008_00046 - 1932 3e-16 59.1 1.8 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 MLDY01000008_00046 - 1932 3e-16 59.1 1.8 3 3 0.85 3.1e+03 -3.4 0.0 171 200 1877 1907 1856 1920 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 MLDY01000008_00046 - 1932 7.5e-08 32.6 8.9 1 2 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 MLDY01000008_00046 - 1932 7.5e-08 32.6 8.9 2 2 0.35 1.2e+03 -0.7 5.5 29 122 1793 1909 1747 1930 0.68 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 MLDY01000008_00046 - 1932 9.6e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 MLDY01000008_00046 - 1932 9.6e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 MLDY01000008_00046 - 1932 8.1e-06 25.7 2.5 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 MLDY01000008_00046 - 1932 8.1e-06 25.7 2.5 2 2 0.068 2.4e+02 1.4 0.1 119 151 1882 1916 1830 1929 0.69 DEAD/DEAH box helicase Eco57I PF07669.11 106 MLDY01000008_00046 - 1932 2.6e-05 24.7 0.7 1 2 6.5e-08 0.00023 21.6 0.2 3 103 371 471 369 474 0.81 Eco57I restriction-modification methylase Eco57I PF07669.11 106 MLDY01000008_00046 - 1932 2.6e-05 24.7 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 MLDY01000008_00047 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 MLDY01000008_00047 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal AAA_31 PF13614.6 177 MLDY01000008_00048 - 186 5.3e-05 23.2 0.6 1 2 2.2e-07 0.001 19.1 0.1 3 26 2 25 1 34 0.91 AAA domain AAA_31 PF13614.6 177 MLDY01000008_00048 - 186 5.3e-05 23.2 0.6 2 2 0.022 98 2.8 0.0 116 156 52 92 24 105 0.69 AAA domain CbiA PF01656.23 128 MLDY01000008_00048 - 186 0.0012 18.9 0.5 1 1 1.8e-06 0.0079 16.3 0.5 1 25 3 27 3 185 0.69 CobQ/CobB/MinD/ParA nucleotide binding domain Mur_ligase_C PF02875.21 91 MLDY01000008_00048 - 186 0.062 13.6 0.0 1 1 2.4e-05 0.11 12.8 0.0 21 78 84 138 70 147 0.84 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 MLDY01000008_00048 - 186 0.18 11.3 0.0 1 1 5.8e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 MLDY01000008_00049 - 88 0.00028 21.0 1.6 1 1 5.9e-08 0.00035 20.7 1.6 51 74 44 66 28 83 0.87 T-antigen specific domain CEBP_ZZ PF16366.5 61 MLDY01000008_00049 - 88 0.022 15.0 2.6 1 1 5e-06 0.03 14.6 2.6 13 53 28 66 25 74 0.79 Cytoplasmic polyadenylation element-binding protein ZZ domain DUF1272 PF06906.11 57 MLDY01000008_00049 - 88 0.049 13.7 3.8 1 1 1.2e-05 0.074 13.1 3.8 8 39 29 58 26 65 0.90 Protein of unknown function (DUF1272) Lip_prot_lig_C PF10437.9 85 MLDZ01000009_00001 - 126 0.048 13.6 3.7 1 2 0.013 2.3e+02 1.9 0.0 56 83 26 51 12 53 0.77 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 MLDZ01000009_00001 - 126 0.048 13.6 3.7 2 2 6.8e-06 0.12 12.4 3.0 2 83 39 123 38 124 0.85 Bacterial lipoate protein ligase C-terminus EptA_B_N PF08019.12 152 MLDZ01000009_00003 - 135 0.12 12.3 10.8 1 2 8.8e-06 0.053 13.4 1.6 98 144 6 52 2 59 0.86 Phosphoethanolamine transferase EptA/EptB EptA_B_N PF08019.12 152 MLDZ01000009_00003 - 135 0.12 12.3 10.8 2 2 0.0055 33 4.3 1.6 70 115 75 120 70 134 0.65 Phosphoethanolamine transferase EptA/EptB FeoB_associated PF12669.7 44 MLDZ01000009_00003 - 135 1.9 9.0 0.0 1 3 0.13 7.6e+02 0.6 1.7 9 17 9 18 7 28 0.50 FeoB-associated Cys-rich membrane protein FeoB_associated PF12669.7 44 MLDZ01000009_00003 - 135 1.9 9.0 0.0 2 3 0.39 2.3e+03 -0.9 0.1 12 23 57 68 54 73 0.66 FeoB-associated Cys-rich membrane protein FeoB_associated PF12669.7 44 MLDZ01000009_00003 - 135 1.9 9.0 0.0 3 3 0.00031 1.9 9.0 0.0 2 26 106 132 105 134 0.81 FeoB-associated Cys-rich membrane protein DUF2070 PF09843.9 564 MLDZ01000009_00003 - 135 7.9 4.6 18.3 1 1 0.0016 9.6 4.4 18.3 73 163 11 117 2 128 0.61 Predicted membrane protein (DUF2070) Topoisom_bac PF01131.20 413 MLDZ01000009_00006 - 730 5.8e-97 325.3 7.7 1 1 7.6e-100 8e-97 324.8 7.7 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 MLDZ01000009_00006 - 730 1.8e-12 47.4 0.4 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 MLDZ01000009_00006 - 730 1.8e-12 47.4 0.4 2 2 4.1 4.4e+03 -2.0 0.0 38 56 537 556 489 567 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 MLDZ01000009_00006 - 730 1.4e-08 34.4 14.8 1 2 3.9e-09 4.1e-06 26.5 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 MLDZ01000009_00006 - 730 1.4e-08 34.4 14.8 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 MLDZ01000009_00006 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 MLDZ01000009_00006 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 MLDZ01000009_00006 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 MLDZ01000009_00006 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MLDZ01000009_00006 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 MLDZ01000009_00006 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MLDZ01000009_00006 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 MLDZ01000009_00006 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MLDZ01000009_00006 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 MLDZ01000009_00006 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 MLDZ01000009_00006 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 MLDZ01000009_00006 - 730 0.088 12.7 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 MLDZ01000009_00006 - 730 0.089 13.1 4.5 1 2 0.00084 0.88 9.9 3.7 5 64 627 689 623 696 0.71 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 MLDZ01000009_00006 - 730 0.089 13.1 4.5 2 2 0.0025 2.6 8.4 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain FLYWCH PF04500.16 62 MLDZ01000009_00006 - 730 0.14 12.3 3.1 1 2 0.19 2e+02 2.2 0.0 25 42 644 660 636 670 0.79 FLYWCH zinc finger domain FLYWCH PF04500.16 62 MLDZ01000009_00006 - 730 0.14 12.3 3.1 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain HTH_34 PF13601.6 80 MLDZ01000009_00006 - 730 0.47 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 MLDZ01000009_00006 - 730 0.47 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 MLDZ01000009_00006 - 730 0.47 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 MLDZ01000009_00006 - 730 0.55 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MLDZ01000009_00006 - 730 0.55 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 MLDZ01000009_00006 - 730 0.63 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 MLDZ01000009_00006 - 730 0.63 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 MLDZ01000009_00006 - 730 0.73 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MLDZ01000009_00006 - 730 0.73 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 MLDZ01000009_00006 - 730 7 6.5 8.0 1 2 0.049 51 3.7 2.5 15 31 629 645 627 660 0.79 PADR1 (NUC008) domain PADR1 PF08063.12 53 MLDZ01000009_00006 - 730 7 6.5 8.0 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 MLDZ01000009_00006 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 MLDZ01000009_00006 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 MLDZ01000009_00007 - 206 0.055 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 MLDZ01000009_00007 - 206 0.055 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 MLDZ01000009_00008 - 265 0.039 13.8 0.5 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 MLDZ01000009_00008 - 265 0.039 13.8 0.5 2 2 6.5e-06 0.039 13.8 0.5 96 155 83 147 69 149 0.85 PRELI-like family DUF2304 PF10066.9 106 MLDZ01000009_00008 - 265 0.1 12.8 0.9 1 1 4e-05 0.24 11.6 0.9 42 101 167 226 165 231 0.94 Uncharacterized conserved protein (DUF2304) Rsd_AlgQ PF04353.13 150 MLDZ01000009_00008 - 265 1.3 8.9 6.1 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 MLDZ01000009_00008 - 265 1.3 8.9 6.1 2 3 7.4e-05 0.44 10.5 1.9 42 108 120 185 89 189 0.81 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 MLDZ01000009_00008 - 265 1.3 8.9 6.1 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 MLDZ01000009_00009 - 254 2.6e-35 121.7 1.4 1 1 2e-39 3.6e-35 121.2 1.4 1 154 24 192 24 194 0.86 TrbM Cag12 PF13117.6 97 MLDZ01000009_00010 - 145 5.5e-17 62.1 0.4 1 1 1.2e-20 6.9e-17 61.8 0.4 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 MLDZ01000009_00010 - 145 0.068 13.0 0.2 1 1 3.3e-05 0.19 11.5 0.2 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 MLDZ01000009_00010 - 145 3.9 7.4 6.0 1 2 0.00075 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 MLDZ01000009_00010 - 145 3.9 7.4 6.0 2 2 0.16 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 MLDZ01000009_00011 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 MLDZ01000009_00011 - 603 9.9e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 MLDZ01000009_00011 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 MLDZ01000009_00011 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 MLDZ01000009_00011 - 603 0.046 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 MLDZ01000009_00012 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 MLDZ01000009_00012 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 MLDZ01000009_00012 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 MLDZ01000009_00012 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 MLDZ01000009_00012 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 MLDZ01000009_00012 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 MLDZ01000009_00012 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 MLDZ01000009_00012 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 MLDZ01000009_00012 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 MLDZ01000009_00012 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 MLDZ01000009_00012 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 MLDZ01000009_00012 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 MLDZ01000009_00012 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 MLDZ01000009_00012 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 MLDZ01000009_00012 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 MLDZ01000009_00012 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 MLDZ01000009_00012 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 MLDZ01000009_00012 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 MLDZ01000009_00012 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 MLDZ01000009_00012 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 MLDZ01000009_00012 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 MLDZ01000009_00012 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 MLDZ01000009_00012 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 MLDZ01000009_00012 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 MLDZ01000009_00012 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 MLDZ01000009_00012 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 MLDZ01000009_00012 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 MLDZ01000009_00012 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 MLDZ01000009_00012 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 MLDZ01000009_00012 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 MLDZ01000009_00012 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 MLDZ01000009_00012 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 MLDZ01000009_00013 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 MLDZ01000009_00013 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 MLDZ01000009_00014 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 MLDZ01000009_00014 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 MLDZ01000009_00014 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 MLDZ01000009_00015 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 MLDZ01000009_00015 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 MLDZ01000009_00016 - 72 0.035 13.0 0.0 1 1 3.9e-06 0.035 13.0 0.0 3 24 20 40 18 68 0.82 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 MLDZ01000009_00016 - 72 1.5 8.6 5.2 1 1 0.00029 2.6 7.9 5.2 8 20 22 34 22 35 0.94 Photosystem II reaction centre T protein TrbL PF04610.14 215 MLDZ01000009_00017 - 332 8.7e-31 107.4 31.2 1 2 4.8e-35 8.7e-31 107.4 31.2 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 MLDZ01000009_00017 - 332 8.7e-31 107.4 31.2 2 2 0.27 4.8e+03 -2.9 0.1 60 71 288 299 266 328 0.51 TrbL/VirB6 plasmid conjugal transfer protein T4SS PF07996.11 197 MLDZ01000009_00018 - 323 2.2e-28 100.0 14.0 1 1 1.1e-31 2.9e-28 99.6 14.0 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 MLDZ01000009_00018 - 323 0.0037 17.4 0.4 1 2 0.84 2.1e+03 -1.1 0.0 30 54 134 158 122 180 0.76 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 MLDZ01000009_00018 - 323 0.0037 17.4 0.4 2 2 5.9e-06 0.015 15.4 0.1 18 82 195 259 186 263 0.92 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 MLDZ01000009_00018 - 323 0.0089 16.7 5.2 1 2 0.048 1.2e+02 3.3 0.5 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 MLDZ01000009_00018 - 323 0.0089 16.7 5.2 2 2 3.5e-06 0.0089 16.7 5.2 47 128 219 318 203 322 0.76 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 MLDZ01000009_00018 - 323 0.064 12.8 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 MLDZ01000009_00018 - 323 0.064 12.8 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 MLDZ01000009_00018 - 323 0.07 13.8 0.9 1 2 2 5e+03 -1.8 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 MLDZ01000009_00018 - 323 0.07 13.8 0.9 2 2 2.7e-05 0.07 13.8 0.9 32 84 209 270 203 295 0.83 von Willebrand factor type A domain DHR10 PF18595.1 117 MLDZ01000009_00018 - 323 5.7 7.0 14.8 1 2 0.1 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 MLDZ01000009_00018 - 323 5.7 7.0 14.8 2 2 0.00026 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain THOC7 PF05615.13 132 MLDZ01000009_00018 - 323 5.8 7.2 12.9 1 2 0.00067 1.7 8.9 0.3 57 107 101 151 97 175 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 MLDZ01000009_00018 - 323 5.8 7.2 12.9 2 2 0.28 7.2e+02 0.4 6.6 15 71 230 294 215 315 0.59 Tho complex subunit 7 IF2_N PF04760.15 54 MLDZ01000009_00019 - 91 6.5e-05 22.7 5.8 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 MLDZ01000009_00019 - 91 6.5e-05 22.7 5.8 2 2 0.0075 34 4.4 0.1 31 53 57 79 56 80 0.87 Translation initiation factor IF-2, N-terminal region HTH_16 PF12645.7 65 MLDZ01000009_00019 - 91 0.013 15.5 1.9 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 MLDZ01000009_00019 - 91 0.013 15.5 1.9 2 2 2.8e-05 0.13 12.4 0.3 15 54 44 82 40 85 0.87 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 MLDZ01000009_00019 - 91 0.029 15.1 0.5 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 MLDZ01000009_00019 - 91 0.029 15.1 0.5 2 2 0.014 63 4.4 0.0 29 51 69 91 64 91 0.83 Rv0623-like transcription factor FliG_N PF14842.6 104 MLDZ01000009_00019 - 91 0.039 14.5 1.0 1 1 1e-05 0.046 14.3 1.0 21 86 9 80 1 85 0.89 FliG N-terminal domain SSB PF00436.25 104 MLDZ01000009_00020 - 140 1.4e-25 89.3 0.1 1 1 1e-29 1.8e-25 89.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3895 PF13034.6 76 MLDZ01000009_00021 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 MLDZ01000009_00021 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) Phage_pRha PF09669.10 88 MLDZ01000009_00022 - 185 6.9e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 MLDZ01000009_00022 - 185 0.0016 18.5 0.0 1 1 9.1e-07 0.0033 17.5 0.0 23 90 27 94 23 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 MLDZ01000009_00022 - 185 0.031 13.9 0.1 1 2 0.063 2.3e+02 1.3 0.0 80 118 33 71 5 80 0.78 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 MLDZ01000009_00022 - 185 0.031 13.9 0.1 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 MLDZ01000009_00022 - 185 0.09 12.8 0.0 1 1 5.5e-05 0.2 11.7 0.0 77 131 80 130 62 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 MLDZ01000009_00022 - 185 0.56 10.3 5.4 1 3 0.048 1.7e+02 2.3 0.0 42 53 14 25 3 28 0.78 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 MLDZ01000009_00022 - 185 0.56 10.3 5.4 2 3 0.0021 7.7 6.6 0.8 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 MLDZ01000009_00022 - 185 0.56 10.3 5.4 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 CagE_TrbE_VirB PF03135.14 206 MLDZ01000009_00023 - 922 3.6e-49 167.7 0.3 1 1 2e-52 9e-49 166.4 0.3 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 MLDZ01000009_00023 - 922 7e-21 74.3 1.2 1 1 2.8e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 MLDZ01000009_00023 - 922 3.8e-07 29.4 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 MLDZ01000009_00023 - 922 0.024 14.7 4.5 1 5 0.52 2.3e+03 -1.6 0.1 117 202 161 253 129 284 0.48 Helicase HerA, central domain DUF87 PF01935.17 227 MLDZ01000009_00023 - 922 0.024 14.7 4.5 2 5 0.89 4e+03 -2.3 0.0 87 124 263 298 243 301 0.77 Helicase HerA, central domain DUF87 PF01935.17 227 MLDZ01000009_00023 - 922 0.024 14.7 4.5 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 MLDZ01000009_00023 - 922 0.024 14.7 4.5 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 MLDZ01000009_00023 - 922 0.024 14.7 4.5 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain TrbC PF04956.13 99 MLDZ01000009_00024 - 87 1.2e-15 57.5 7.6 1 1 1.5e-19 1.4e-15 57.3 7.6 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 MLDZ01000009_00024 - 87 0.047 13.5 4.0 1 1 6.1e-06 0.054 13.3 3.6 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 MLDZ01000009_00026 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 MLDZ01000009_00026 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 MLDZ01000009_00026 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase Resolvase PF00239.21 146 MLDZ01000009_00027 - 204 3.6e-33 114.7 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 MLDZ01000009_00027 - 204 0.027 14.2 1.2 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 MLDZ01000009_00027 - 204 0.027 14.2 1.2 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 MLDZ01000009_00027 - 204 0.027 14.2 1.2 3 3 0.0087 39 4.1 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 MLDZ01000009_00027 - 204 0.047 13.7 5.4 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 MLDZ01000009_00027 - 204 0.047 13.7 5.4 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 MLDZ01000009_00027 - 204 0.047 13.7 5.4 3 3 0.0092 41 4.3 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 MLDZ01000009_00027 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 MLDZ01000009_00027 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 MLDZ01000009_00027 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat AAA_25 PF13481.6 194 MLDZ01000009_00028 - 597 5.3e-15 55.5 0.0 1 1 5e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 MLDZ01000009_00028 - 597 0.00032 20.1 0.0 1 2 8.7e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 MLDZ01000009_00028 - 597 0.00032 20.1 0.0 2 2 0.012 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 MLDZ01000009_00028 - 597 0.0021 17.8 0.0 1 2 6.6e-06 0.015 15.1 0.0 46 87 32 73 22 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 MLDZ01000009_00028 - 597 0.0021 17.8 0.0 2 2 0.62 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 MLDZ01000009_00028 - 597 0.0072 15.7 0.0 1 2 2.6e-05 0.058 12.7 0.0 16 70 30 83 23 120 0.90 KaiC ATPase PF06745.13 231 MLDZ01000009_00028 - 597 0.0072 15.7 0.0 2 2 0.49 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC AAA PF00004.29 132 MLDZ01000009_00028 - 597 0.013 15.9 0.2 1 2 0.00015 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 MLDZ01000009_00028 - 597 0.013 15.9 0.2 2 2 0.19 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 MLDZ01000009_00028 - 597 0.2 11.7 2.0 1 1 0.00043 0.95 9.5 2.0 1 29 35 63 35 529 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 MLDZ01000009_00028 - 597 0.35 10.8 3.5 1 3 0.0023 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 MLDZ01000009_00028 - 597 0.35 10.8 3.5 2 3 0.2 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 MLDZ01000009_00028 - 597 0.35 10.8 3.5 3 3 0.38 8.5e+02 -0.0 0.1 9 23 521 535 516 541 0.75 Apolipoprotein C-I (ApoC-1) VASP_tetra PF08776.11 37 MLDZ01000009_00028 - 597 3.8 7.2 6.1 1 2 0.006 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 MLDZ01000009_00028 - 597 3.8 7.2 6.1 2 2 0.038 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain HicA_toxin PF07927.12 58 MLDZ01000009_00029 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 MLDZ01000009_00030 - 72 4.2e-08 33.3 0.0 1 1 2.4e-12 4.4e-08 33.3 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 MLDZ01000009_00032 - 85 0.0043 17.1 1.7 1 1 6e-07 0.0054 16.8 1.7 34 88 20 76 18 80 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2633 PF11119.8 57 MLDZ01000009_00032 - 85 0.93 9.4 4.2 1 1 0.00019 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) DUF4223 PF13978.6 54 MLDZ01000009_00033 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 MLDZ01000009_00033 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 MLDZ01000009_00033 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 MLDZ01000009_00034 - 409 1.6e-08 34.8 0.2 1 2 0.7 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 MLDZ01000009_00034 - 409 1.6e-08 34.8 0.2 2 2 4.8e-12 4.3e-08 33.4 0.0 3 94 271 376 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 MLDZ01000009_00034 - 409 0.017 15.4 0.1 1 2 0.012 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 MLDZ01000009_00034 - 409 0.017 15.4 0.1 2 2 0.00015 1.3 9.3 0.0 15 83 283 359 277 369 0.80 Retrotransposon gag protein Sds3 PF08598.11 218 MLDZ01000009_00036 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 MLDZ01000009_00036 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 MLDZ01000009_00036 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 MLDZ01000009_00036 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 MLDZ01000009_00036 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 MLDZ01000009_00037 - 183 0.00012 22.0 7.0 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 MLDZ01000009_00037 - 183 0.00012 22.0 7.0 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 MLDZ01000009_00037 - 183 0.00012 22.0 7.0 3 3 1.2e-05 0.043 13.8 1.2 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 MLDZ01000009_00037 - 183 0.063 13.4 2.6 1 1 2e-05 0.071 13.2 1.5 57 131 21 103 9 126 0.66 Stage III sporulation protein AB (spore_III_AB) NLRC4_HD PF17889.1 107 MLDZ01000009_00037 - 183 0.47 10.8 6.1 1 2 0.00044 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 MLDZ01000009_00037 - 183 0.47 10.8 6.1 2 2 0.021 76 3.7 0.2 45 88 102 143 92 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 MLDZ01000009_00037 - 183 0.53 10.4 9.0 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 MLDZ01000009_00037 - 183 0.53 10.4 9.0 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 MLDZ01000009_00037 - 183 0.53 10.4 9.0 3 3 0.00042 1.5 8.9 0.4 8 32 103 127 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 MLDZ01000009_00037 - 183 0.57 10.5 7.1 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 MLDZ01000009_00037 - 183 0.57 10.5 7.1 2 2 0.00017 0.61 10.4 1.8 1 50 71 120 71 161 0.80 DNA sulphur modification protein DndE Relaxase PF03432.14 242 MLDZ01000009_00038 - 462 7.8e-10 38.8 7.7 1 2 8.7e-14 7.8e-10 38.8 7.7 48 227 119 295 70 311 0.65 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 MLDZ01000009_00038 - 462 7.8e-10 38.8 7.7 2 2 0.037 3.3e+02 0.7 5.7 137 183 348 394 316 426 0.72 Relaxase/Mobilisation nuclease domain YqaJ PF09588.10 148 MLDZ01000009_00038 - 462 0.03 14.5 3.9 1 3 2.7e-05 0.24 11.6 0.4 92 136 210 255 33 259 0.79 YqaJ-like viral recombinase domain YqaJ PF09588.10 148 MLDZ01000009_00038 - 462 0.03 14.5 3.9 2 3 0.011 96 3.1 0.0 29 63 265 300 257 306 0.71 YqaJ-like viral recombinase domain YqaJ PF09588.10 148 MLDZ01000009_00038 - 462 0.03 14.5 3.9 3 3 0.81 7.3e+03 -3.0 0.0 54 138 373 388 346 402 0.56 YqaJ-like viral recombinase domain HTH_19 PF12844.7 65 MLDZ01000009_00039 - 314 6.3e-06 26.1 0.3 1 3 0.0016 2.1 8.5 0.0 11 32 9 30 2 46 0.89 Helix-turn-helix domain HTH_19 PF12844.7 65 MLDZ01000009_00039 - 314 6.3e-06 26.1 0.3 2 3 6.9 8.9e+03 -3.2 0.0 43 52 90 99 77 105 0.56 Helix-turn-helix domain HTH_19 PF12844.7 65 MLDZ01000009_00039 - 314 6.3e-06 26.1 0.3 3 3 1.9e-05 0.024 14.6 0.0 27 64 116 152 107 153 0.92 Helix-turn-helix domain HTH_3 PF01381.22 55 MLDZ01000009_00039 - 314 7.6e-06 25.9 0.0 1 2 4.9e-08 6.2e-05 23.0 0.0 2 29 3 30 2 30 0.93 Helix-turn-helix HTH_3 PF01381.22 55 MLDZ01000009_00039 - 314 7.6e-06 25.9 0.0 2 2 0.73 9.4e+02 -0.0 0.0 26 55 118 147 110 147 0.85 Helix-turn-helix Phage_CI_repr PF07022.13 65 MLDZ01000009_00039 - 314 0.00035 20.6 0.0 1 2 4.5e-05 0.057 13.5 0.0 11 49 10 47 2 50 0.77 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 MLDZ01000009_00039 - 314 0.00035 20.6 0.0 2 2 0.028 36 4.5 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 MLDZ01000009_00039 - 314 0.0024 17.4 0.1 1 2 1.1e-05 0.015 14.9 0.1 17 35 10 28 9 29 0.93 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 MLDZ01000009_00039 - 314 0.0024 17.4 0.1 2 2 0.77 9.9e+02 -0.6 0.0 26 38 98 110 95 112 0.85 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 65 MLDZ01000009_00039 - 314 0.0043 16.9 0.1 1 2 1.4e-05 0.017 14.9 0.0 4 36 5 37 2 49 0.75 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 MLDZ01000009_00039 - 314 0.0043 16.9 0.1 2 2 2.5 3.2e+03 -1.9 0.1 38 47 290 299 289 300 0.87 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_17 PF12728.7 51 MLDZ01000009_00039 - 314 0.028 14.6 0.0 1 2 0.13 1.7e+02 2.5 0.0 5 16 3 14 2 16 0.90 Helix-turn-helix domain HTH_17 PF12728.7 51 MLDZ01000009_00039 - 314 0.028 14.6 0.0 2 2 0.00031 0.4 10.9 0.0 5 27 14 36 11 42 0.85 Helix-turn-helix domain HTH_28 PF13518.6 52 MLDZ01000009_00039 - 314 0.033 14.3 0.0 1 1 6.2e-05 0.079 13.1 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain HTH_23 PF13384.6 50 MLDZ01000009_00039 - 314 0.046 13.5 0.0 1 1 8.4e-05 0.11 12.4 0.0 16 37 7 30 1 35 0.85 Homeodomain-like domain HTH_26 PF13443.6 63 MLDZ01000009_00039 - 314 0.048 14.1 0.1 1 1 8.6e-05 0.11 12.9 0.1 3 30 3 30 1 38 0.88 Cro/C1-type HTH DNA-binding domain HTH_Mga PF08280.11 60 MLDZ01000009_00039 - 314 0.049 13.7 2.0 1 3 0.0013 1.7 8.7 0.1 21 39 11 29 4 30 0.91 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 MLDZ01000009_00039 - 314 0.049 13.7 2.0 2 3 0.065 83 3.3 0.0 25 59 41 75 32 76 0.80 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 MLDZ01000009_00039 - 314 0.049 13.7 2.0 3 3 9 1.2e+04 -3.5 0.0 46 50 94 98 86 105 0.47 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.6 52 MLDZ01000009_00039 - 314 0.063 12.7 0.0 1 1 9.3e-05 0.12 11.8 0.0 26 47 10 30 4 33 0.90 Helix-turn-helix domain of transposase family ISL3 HTH_31 PF13560.6 64 MLDZ01000009_00039 - 314 0.075 13.4 0.0 1 1 0.00011 0.14 12.5 0.0 12 34 8 30 2 41 0.88 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 MLDZ01000009_00039 - 314 0.11 12.2 0.0 1 1 0.00022 0.28 10.9 0.0 25 46 9 30 5 30 0.93 Sigma-70, region 4 Crp PF00325.20 32 MLDZ01000009_00039 - 314 0.17 11.6 0.1 1 2 0.00033 0.43 10.3 0.0 1 19 9 27 9 28 0.86 Bacterial regulatory proteins, crp family Crp PF00325.20 32 MLDZ01000009_00039 - 314 0.17 11.6 0.1 2 2 3.2 4.1e+03 -2.5 0.0 18 24 105 111 104 112 0.83 Bacterial regulatory proteins, crp family SNF2_N PF00176.23 350 MLDZ01000009_00040 - 1137 2.3e-16 59.4 3.1 1 3 8e-20 2.9e-16 59.2 0.3 56 245 222 478 140 493 0.72 SNF2 family N-terminal domain SNF2_N PF00176.23 350 MLDZ01000009_00040 - 1137 2.3e-16 59.4 3.1 2 3 0.37 1.3e+03 -2.2 0.0 245 283 674 717 667 738 0.71 SNF2 family N-terminal domain SNF2_N PF00176.23 350 MLDZ01000009_00040 - 1137 2.3e-16 59.4 3.1 3 3 0.4 1.4e+03 -2.3 0.0 170 198 1082 1111 1053 1130 0.70 SNF2 family N-terminal domain ResIII PF04851.15 171 MLDZ01000009_00040 - 1137 3.2e-08 33.8 8.8 1 3 9e-12 3.2e-08 33.8 8.8 2 148 205 417 204 448 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 MLDZ01000009_00040 - 1137 3.2e-08 33.8 8.8 2 3 0.99 3.6e+03 -2.2 0.2 92 135 930 931 868 990 0.52 Type III restriction enzyme, res subunit ResIII PF04851.15 171 MLDZ01000009_00040 - 1137 3.2e-08 33.8 8.8 3 3 0.97 3.5e+03 -2.2 7.1 56 151 1032 1109 930 1132 0.60 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 MLDZ01000009_00040 - 1137 6.8e-07 29.6 1.6 1 3 0.082 2.9e+02 1.8 0.0 45 73 282 310 231 315 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 MLDZ01000009_00040 - 1137 6.8e-07 29.6 1.6 2 3 6.8e-09 2.4e-05 24.6 0.0 40 111 716 789 670 789 0.79 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 MLDZ01000009_00040 - 1137 6.8e-07 29.6 1.6 3 3 3.3 1.2e+04 -3.3 0.1 33 66 1059 1092 1040 1096 0.56 Helicase conserved C-terminal domain DEAD PF00270.29 176 MLDZ01000009_00040 - 1137 9.8e-07 28.7 1.9 1 2 1.5e-07 0.00054 19.8 0.4 2 108 209 314 208 413 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 MLDZ01000009_00040 - 1137 9.8e-07 28.7 1.9 2 2 0.036 1.3e+02 2.2 0.1 119 153 1088 1124 1025 1135 0.69 DEAD/DEAH box helicase BST2 PF16716.5 91 MLDZ01000009_00040 - 1137 4.3 8.0 7.3 1 2 0.0023 8.1 7.1 2.7 48 87 333 372 322 376 0.89 Bone marrow stromal antigen 2 BST2 PF16716.5 91 MLDZ01000009_00040 - 1137 4.3 8.0 7.3 2 2 0.27 9.8e+02 0.4 0.1 61 80 1051 1070 1037 1080 0.77 Bone marrow stromal antigen 2 Eco57I PF07669.11 106 MLDZ01000009_00041 - 674 1.2e-05 25.7 0.3 1 1 5.6e-09 5e-05 23.8 0.3 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase MTS PF05175.14 169 MLDZ01000009_00041 - 674 0.004 16.7 0.0 1 1 1.1e-06 0.0098 15.5 0.0 31 140 308 421 298 441 0.72 Methyltransferase small domain RHH_7 PF16777.5 74 MLDZ01000009_00042 - 88 8.5e-07 29.3 0.8 1 1 5.2e-11 9.4e-07 29.1 0.8 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 MLDZ01000009_00043 - 186 7.8e-05 22.7 0.5 1 2 2.4e-07 0.0011 19.0 0.1 3 26 2 25 1 31 0.91 AAA domain AAA_31 PF13614.6 177 MLDZ01000009_00043 - 186 7.8e-05 22.7 0.5 2 2 0.04 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 MLDZ01000009_00043 - 186 0.00097 19.2 0.8 1 1 1.7e-06 0.0077 16.3 0.8 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 MLDZ01000009_00043 - 186 0.014 14.8 0.0 1 1 4.3e-06 0.019 14.4 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase ParA PF10609.9 246 MLDZ01000009_00043 - 186 0.17 11.3 0.0 1 1 5.8e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 MLDZ01000009_00044 - 88 0.02 15.0 7.2 1 1 8.3e-06 0.03 14.5 7.2 51 74 44 66 25 83 0.85 T-antigen specific domain DUF1272 PF06906.11 57 MLDZ01000009_00044 - 88 0.059 13.5 6.2 1 1 2.6e-05 0.095 12.8 6.2 8 39 29 58 25 65 0.88 Protein of unknown function (DUF1272) CEBP_ZZ PF16366.5 61 MLDZ01000009_00044 - 88 0.14 12.4 6.2 1 1 5.4e-05 0.19 12.0 6.2 13 53 28 66 25 74 0.78 Cytoplasmic polyadenylation element-binding protein ZZ domain LIM PF00412.22 58 MLDZ01000009_00044 - 88 0.23 11.7 8.9 1 1 0.00011 0.4 10.9 8.9 26 57 26 58 25 59 0.86 LIM domain DUF5595 PF18077.1 73 MLDZ01000009_00044 - 88 0.9 9.7 5.1 1 2 1.4 5.1e+03 -2.4 0.1 46 59 5 18 3 22 0.62 Domain of unknown function (DUF5595) DUF5595 PF18077.1 73 MLDZ01000009_00044 - 88 0.9 9.7 5.1 2 2 5.2e-05 0.19 11.9 1.3 4 29 38 63 37 87 0.77 Domain of unknown function (DUF5595) LysE PF01810.18 193 MLDZ01000009_00045 - 81 5.1e-06 26.1 0.0 1 1 1.9e-09 5.8e-06 25.9 0.0 37 94 6 65 3 78 0.88 LysE type translocator DUF1516 PF07457.11 108 MLDZ01000009_00045 - 81 0.00027 21.1 1.1 1 1 1e-07 0.00031 20.9 1.1 37 84 5 50 1 64 0.81 Protein of unknown function (DUF1516) Ac76 PF05814.11 83 MLDZ01000009_00045 - 81 0.0043 17.0 2.2 1 1 1.7e-06 0.0049 16.8 2.2 3 70 7 70 1 78 0.88 Orf76 (Ac76) Saf_2TM PF18303.1 152 MLDZ01000009_00045 - 81 0.24 11.0 3.5 1 2 0.084 2.5e+02 1.2 0.4 72 90 5 23 2 27 0.48 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 MLDZ01000009_00045 - 81 0.24 11.0 3.5 2 2 3.9e-05 0.12 12.0 0.7 60 99 21 59 15 65 0.78 SAVED-fused 2TM effector domain DUF2873 PF11395.8 43 MLDZ01000009_00045 - 81 3.7 7.5 6.8 1 2 0.00026 0.78 9.6 0.6 1 20 1 20 1 25 0.92 Protein of unknown function (DUF2873) DUF2873 PF11395.8 43 MLDZ01000009_00045 - 81 3.7 7.5 6.8 2 2 0.1 3e+02 1.4 1.1 9 24 26 41 21 48 0.74 Protein of unknown function (DUF2873) LPAM_1 PF08139.12 18 MLDZ01000009_00045 - 81 7.1 7.3 5.9 1 2 0.00035 1.1 9.9 0.6 1 16 1 16 1 16 0.97 Prokaryotic membrane lipoprotein lipid attachment site LPAM_1 PF08139.12 18 MLDZ01000009_00045 - 81 7.1 7.3 5.9 2 2 0.99 3e+03 -0.9 0.5 6 12 33 39 30 40 0.60 Prokaryotic membrane lipoprotein lipid attachment site Flp1_like PF16982.5 49 MLDZ01000009_00046 - 132 0.044 13.2 3.1 1 3 4.9e-06 0.044 13.2 3.1 17 43 17 43 16 45 0.89 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 MLDZ01000009_00046 - 132 0.044 13.2 3.1 2 3 1.2 1e+04 -4.0 0.3 16 22 67 73 66 76 0.49 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 MLDZ01000009_00046 - 132 0.044 13.2 3.1 3 3 1.2 1.1e+04 -4.1 1.5 18 29 92 103 89 107 0.58 Putative Flagellin, Flp1-like, domain BRI3BP PF14965.6 180 MLDZ01000009_00046 - 132 0.053 13.0 1.6 1 1 6.6e-06 0.06 12.9 1.6 59 106 51 101 9 120 0.82 Negative regulator of p53/TP53 GTP_EFTU PF00009.27 194 MUJW01000047_00001 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 MUJW01000047_00001 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 MUJW01000047_00001 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 MUJW01000047_00001 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 MUJW01000047_00001 - 639 2.2e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 MUJW01000047_00001 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 MUJW01000047_00001 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 MUJW01000047_00001 - 639 0.0095 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 MUJW01000047_00001 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 MUJW01000047_00001 - 639 0.049 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family APH PF01636.23 240 MUJW01000047_00002 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 MUJW01000047_00002 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 MUJW01000047_00002 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 MUJW01000047_00002 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family W2 PF02020.18 79 MUJW01000047_00003 - 266 0.02 15.0 0.1 1 2 0.23 4.1e+03 -2.0 0.0 43 65 155 177 150 179 0.61 eIF4-gamma/eIF5/eIF2-epsilon W2 PF02020.18 79 MUJW01000047_00003 - 266 0.02 15.0 0.1 2 2 3.4e-06 0.061 13.5 0.0 38 77 180 240 176 242 0.86 eIF4-gamma/eIF5/eIF2-epsilon Lip_prot_lig_C PF10437.9 85 MUJW01000047_00004 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 MUJW01000047_00004 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 MUJW01000047_00004 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 MUJW01000047_00004 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain LysE PF01810.18 193 MUJW01000047_00005 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 MUJW01000047_00005 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 MUJW01000047_00005 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 MUJW01000047_00005 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 MUJW01000047_00005 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 MUJW01000047_00005 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 MUJW01000047_00005 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 MUJW01000047_00005 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 MUJW01000047_00005 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 MUJW01000047_00005 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 MUJW01000047_00005 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 MUJW01000047_00005 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 MUJW01000047_00006 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 MUJW01000047_00006 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 MUJW01000047_00006 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 MUJW01000047_00006 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 MUJW01000047_00006 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 MUJW01000047_00006 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 MUJW01000047_00007 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 MUJW01000047_00007 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 MUJW01000047_00008 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 MUJW01000047_00008 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 MUJW01000047_00008 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 MUJW01000047_00008 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 MUJW01000047_00008 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 MUJW01000047_00008 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 MUJW01000047_00009 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 MUJW01000047_00010 - 1931 3.1e-16 59.1 2.7 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1016 1272 934 1313 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 MUJW01000047_00010 - 1931 3.1e-16 59.1 2.7 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 MUJW01000047_00010 - 1931 3.1e-16 59.1 2.7 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1875 1923 1845 1924 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 MUJW01000047_00010 - 1931 4.9e-08 33.2 8.3 1 2 1.4e-11 4.9e-08 33.2 8.3 2 148 999 1211 998 1242 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 MUJW01000047_00010 - 1931 4.9e-08 33.2 8.3 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1798 1909 1724 1931 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 MUJW01000047_00010 - 1931 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1076 1104 1028 1108 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 MUJW01000047_00010 - 1931 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 MUJW01000047_00010 - 1931 8.9e-06 25.6 1.8 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1003 1108 1002 1204 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 MUJW01000047_00010 - 1931 8.9e-06 25.6 1.8 2 2 0.12 4.2e+02 0.6 0.0 119 150 1882 1915 1827 1930 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 MUJW01000047_00010 - 1931 3.7e-05 24.2 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 371 471 369 474 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 MUJW01000047_00010 - 1931 3.7e-05 24.2 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 MUJW01000047_00011 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 MUJW01000047_00011 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 MUJW01000047_00011 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 MUJW01000047_00011 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) Acetyltransf_7 PF13508.7 76 MUJW01000047_00012 - 234 0.0002 21.7 0.0 1 1 6.3e-08 0.00038 20.8 0.0 29 75 79 143 36 144 0.68 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 MUJW01000047_00012 - 234 0.0029 17.8 0.0 1 1 1.2e-06 0.0072 16.5 0.0 64 92 81 109 56 142 0.78 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 MUJW01000047_00012 - 234 0.0083 16.2 0.3 1 1 2.6e-06 0.015 15.3 0.3 24 67 171 214 154 218 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Relaxase PF03432.14 242 MUJW01000047_00013 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 MUJW01000047_00013 - 462 4.7e-10 39.5 7.4 2 2 0.0071 1.3e+02 2.0 5.4 119 183 326 395 318 430 0.69 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 MUJW01000047_00014 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 MUJW01000047_00014 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 MUJW01000047_00014 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 MUJW01000047_00014 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 MUJW01000047_00014 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 MUJW01000047_00014 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 MUJW01000047_00014 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 MUJW01000047_00014 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 MUJW01000047_00014 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 MUJW01000047_00014 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 MUJW01000047_00014 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 MUJW01000047_00015 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 MUJW01000047_00015 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 MUJW01000047_00015 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 MUJW01000047_00015 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 MUJW01000047_00015 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 MUJW01000047_00017 - 217 0.19 11.7 5.6 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 MUJW01000047_00017 - 217 0.19 11.7 5.6 2 2 2.2e-05 0.39 10.7 1.6 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 MUJW01000047_00018 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 MUJW01000047_00018 - 408 0.074 13.0 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 MUJW01000047_00018 - 408 0.13 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 MUJW01000047_00018 - 408 0.27 11.9 5.3 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 MUJW01000047_00018 - 408 0.27 11.9 5.3 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 MUJW01000047_00019 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 MUJW01000047_00019 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 MUJW01000047_00019 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain UBA_6 PF18039.1 42 MUJW01000047_00020 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 MUJW01000047_00020 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 MUJW01000047_00020 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 MUJW01000047_00020 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 MUJW01000047_00021 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 MUJW01000047_00021 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 MUJW01000047_00021 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 MUJW01000047_00023 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system AAA_25 PF13481.6 194 MUJW01000047_00024 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 MUJW01000047_00024 - 597 0.00073 19.0 0.0 1 2 1.6e-06 0.0042 16.5 0.0 16 117 30 136 23 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 MUJW01000047_00024 - 597 0.00073 19.0 0.0 2 2 0.014 37 3.5 0.0 123 183 114 176 98 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 MUJW01000047_00024 - 597 0.0032 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 MUJW01000047_00024 - 597 0.0032 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 MUJW01000047_00024 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 MUJW01000047_00024 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 MUJW01000047_00024 - 597 0.028 13.8 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 MUJW01000047_00024 - 597 0.028 13.8 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 MUJW01000047_00024 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 MUJW01000047_00024 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 MUJW01000047_00024 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 MUJW01000047_00025 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 MUJW01000047_00025 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 MUJW01000047_00025 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 MUJW01000047_00025 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 MUJW01000047_00025 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 MUJW01000047_00025 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 MUJW01000047_00025 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 MUJW01000047_00025 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 MUJW01000047_00025 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 MUJW01000047_00025 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 MUJW01000047_00026 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 MUJW01000047_00026 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 MUJW01000047_00026 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 MUJW01000047_00028 - 87 1.4e-15 57.3 6.9 1 1 1.8e-19 1.6e-15 57.1 6.9 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 MUJW01000047_00028 - 87 0.041 13.8 3.5 1 1 5.4e-06 0.049 13.5 3.3 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 MUJW01000047_00029 - 922 2.6e-50 171.4 0.6 1 1 9.8e-54 5.9e-50 170.2 0.6 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 MUJW01000047_00029 - 922 7.2e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 MUJW01000047_00029 - 922 0.046 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 MUJW01000047_00030 - 185 6.3e-29 100.4 0.0 1 1 2.7e-32 9.7e-29 99.8 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 MUJW01000047_00030 - 185 0.0015 18.6 0.0 1 1 9.1e-07 0.0033 17.5 0.0 23 90 27 94 23 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 MUJW01000047_00030 - 185 0.045 13.3 0.1 1 2 0.066 2.4e+02 1.3 0.0 80 118 33 71 5 80 0.79 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 MUJW01000047_00030 - 185 0.045 13.3 0.1 2 2 0.00012 0.42 10.2 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 MUJW01000047_00030 - 185 0.086 12.9 0.0 1 1 5.8e-05 0.21 11.6 0.0 77 131 80 130 63 134 0.84 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 MUJW01000047_00030 - 185 0.73 9.9 5.7 1 3 0.054 1.9e+02 2.1 0.0 43 53 15 25 4 29 0.81 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 MUJW01000047_00030 - 185 0.73 9.9 5.7 2 3 0.0022 7.9 6.6 0.8 5 26 30 50 26 61 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 MUJW01000047_00030 - 185 0.73 9.9 5.7 3 3 0.064 2.3e+02 1.9 0.0 10 42 116 154 108 160 0.67 Sporulation protein Cse60 DUF3251 PF11622.8 165 MUJW01000047_00031 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 MUJW01000047_00031 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 MUJW01000047_00031 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 MUJW01000047_00031 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 MUJW01000047_00031 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 MUJW01000047_00031 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 MUJW01000047_00031 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 MUJW01000047_00031 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 MUJW01000047_00031 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 MUJW01000047_00031 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 MUJW01000047_00031 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 MUJW01000047_00031 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 MUJW01000047_00031 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 MUJW01000047_00031 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 MUJW01000047_00032 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 MUJW01000047_00033 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 MUJW01000047_00033 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 MUJW01000047_00033 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 MUJW01000047_00033 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 MUJW01000047_00033 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 MUJW01000047_00033 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 MUJW01000047_00033 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 MUJW01000047_00034 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 MUJW01000047_00034 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 MUJW01000047_00034 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 MUJW01000047_00034 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 MUJW01000047_00034 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 MUJW01000047_00034 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 MUJW01000047_00034 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 MUJW01000047_00034 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 MUJW01000047_00034 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 MUJW01000047_00034 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 MUJW01000047_00034 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 MUJW01000047_00034 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 MUJW01000047_00034 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 MUJW01000047_00034 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 MUJW01000047_00034 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain TrbL PF04610.14 215 MUJW01000047_00035 - 288 3.6e-30 105.4 29.1 1 2 7.9e-34 3.6e-30 105.4 29.1 6 214 1 208 1 209 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 MUJW01000047_00035 - 288 3.6e-30 105.4 29.1 2 2 0.18 8.2e+02 -0.4 0.1 56 91 240 285 218 288 0.61 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 MUJW01000047_00035 - 288 0.12 12.2 1.4 1 2 0.083 3.7e+02 1.0 0.2 33 66 20 60 16 75 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 MUJW01000047_00035 - 288 0.12 12.2 1.4 2 2 0.00015 0.68 9.8 0.1 28 81 194 244 150 257 0.77 T-cell leukemia translocation-altered AIM3 PF17096.5 88 MUJW01000047_00035 - 288 1.3 10.0 5.2 1 1 0.0005 2.2 9.3 5.2 8 38 255 285 248 287 0.87 Altered inheritance of mitochondria protein 3 MerC PF03203.14 117 MUJW01000047_00035 - 288 4.9 7.6 19.7 1 1 0.0056 25 5.4 19.7 4 92 87 189 83 237 0.71 MerC mercury resistance protein Trep_dent_lipo PF09710.10 397 MUJW01000047_00036 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 MUJW01000047_00036 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 MUJW01000047_00037 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 MUJW01000047_00037 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 MUJW01000047_00038 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 MUJW01000047_00038 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 MUJW01000047_00038 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 MUJW01000047_00039 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 MUJW01000047_00039 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 MUJW01000047_00040 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 MUJW01000047_00040 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 MUJW01000047_00040 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 MUJW01000047_00040 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 MUJW01000047_00040 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 MUJW01000047_00040 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 MUJW01000047_00040 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 MUJW01000047_00040 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 MUJW01000047_00040 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 MUJW01000047_00040 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 MUJW01000047_00040 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 MUJW01000047_00040 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 MUJW01000047_00040 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 MUJW01000047_00040 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 MUJW01000047_00040 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 MUJW01000047_00040 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 MUJW01000047_00040 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 MUJW01000047_00040 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 MUJW01000047_00040 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 MUJW01000047_00040 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 MUJW01000047_00040 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 MUJW01000047_00040 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 MUJW01000047_00040 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 MUJW01000047_00040 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 MUJW01000047_00040 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 MUJW01000047_00040 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 MUJW01000047_00040 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 MUJW01000047_00040 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 MUJW01000047_00040 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 MUJW01000047_00040 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 MUJW01000047_00040 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 MUJW01000047_00040 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 MUJW01000047_00041 - 603 1e-104 351.0 0.1 1 1 4.2e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 MUJW01000047_00041 - 603 9.3e-25 87.0 0.0 1 1 5.8e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 MUJW01000047_00041 - 603 1.9e-14 53.4 0.0 1 2 5.5e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 MUJW01000047_00041 - 603 1.9e-14 53.4 0.0 2 2 3.6e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 MUJW01000047_00041 - 603 0.047 13.8 0.1 1 1 3e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Phage_holin_3_6 PF07332.11 113 MUJW01000047_00041 - 603 0.22 11.6 0.2 1 1 9.8e-05 0.35 10.9 0.2 33 93 6 87 2 100 0.75 Putative Actinobacterial Holin-X, holin superfamily III Cag12 PF13117.6 97 MUJW01000047_00042 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 MUJW01000047_00042 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 MUJW01000047_00042 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 MUJW01000047_00042 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 MUJW01000047_00042 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 MUJW01000047_00043 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 MUJW01000047_00044 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 MUJW01000047_00044 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 MUJW01000047_00044 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 MUJW01000047_00044 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 MUJW01000047_00044 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 MUJW01000047_00044 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 MUJW01000047_00046 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 MUJW01000047_00046 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 MUJW01000047_00047 - 730 1.2e-96 324.2 8.2 1 1 1.6e-99 1.7e-96 323.8 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 MUJW01000047_00047 - 730 1.8e-12 47.4 0.4 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 MUJW01000047_00047 - 730 1.8e-12 47.4 0.4 2 2 4.1 4.3e+03 -2.0 0.1 38 56 537 556 489 568 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 MUJW01000047_00047 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 MUJW01000047_00047 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 MUJW01000047_00047 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 MUJW01000047_00047 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 MUJW01000047_00047 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 MUJW01000047_00047 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MUJW01000047_00047 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 MUJW01000047_00047 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MUJW01000047_00047 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 MUJW01000047_00047 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 MUJW01000047_00047 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 MUJW01000047_00047 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MUJW01000047_00047 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 MUJW01000047_00047 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 MUJW01000047_00047 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 MUJW01000047_00047 - 730 0.088 12.7 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 MUJW01000047_00047 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 MUJW01000047_00047 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 MUJW01000047_00047 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 MUJW01000047_00047 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 MUJW01000047_00047 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 MUJW01000047_00047 - 730 0.55 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MUJW01000047_00047 - 730 0.55 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 MUJW01000047_00047 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 MUJW01000047_00047 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 MUJW01000047_00047 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MUJW01000047_00047 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 MUJW01000047_00047 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 MUJW01000047_00047 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 MUJW01000047_00047 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 MUJW01000047_00047 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 MUJW01000047_00048 - 473 5.3e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 MUJW01000047_00048 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 MUJW01000047_00050 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 MUJW01000047_00050 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 MUJW01000047_00050 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 MUJW01000047_00050 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 MUJW01000047_00050 - 639 2.2e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 MUJW01000047_00050 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 MUJW01000047_00050 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 MUJW01000047_00050 - 639 0.0095 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 MUJW01000047_00050 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 MUJW01000047_00050 - 639 0.049 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family Mur_ligase_M PF08245.12 192 NAAE01000001_00001 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 NAAE01000001_00001 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 NAAE01000001_00001 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain DUF4570 PF15134.6 110 NAAE01000001_00002 - 423 0.17 11.9 1.7 1 1 1.8e-05 0.32 11.0 1.7 27 98 4 76 1 84 0.78 Domain of unknown function (DUF4570) CTP_transf_3 PF02348.19 221 NAAE01000001_00003 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 NAAE01000001_00003 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 NAAE01000001_00003 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 NAAE01000001_00003 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 NAAE01000001_00003 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain PALP PF00291.25 294 NAAE01000001_00004 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 NAAE01000001_00004 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 NAAE01000001_00004 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 NAAE01000001_00004 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 NAAE01000001_00004 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 NAAE01000001_00004 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain LpxK PF02606.14 327 NAAE01000001_00005 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 NAAE01000001_00005 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 NAAE01000001_00005 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 NAAE01000001_00005 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) NAD_synthase PF02540.17 242 NAAE01000001_00006 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 NAAE01000001_00006 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 NAAE01000001_00006 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 NAAE01000001_00006 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 NAAE01000001_00006 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 NAAE01000001_00006 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 NAAE01000001_00006 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 NAAE01000001_00006 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 NAAE01000001_00006 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family Lactamase_B PF00753.27 197 NAAE01000001_00007 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 NAAE01000001_00007 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain DUF1129 PF06570.11 206 NAAE01000001_00008 - 101 0.24 10.9 5.2 1 1 3.7e-05 0.67 9.4 3.4 80 129 1 68 1 74 0.83 Protein of unknown function (DUF1129) adh_short_C2 PF13561.6 234 NAAE01000001_00009 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 NAAE01000001_00009 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 NAAE01000001_00009 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 NAAE01000001_00009 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 NAAE01000001_00009 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif DHDPS PF00701.22 289 NAAE01000001_00010 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 NAAE01000001_00010 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 NAAE01000001_00010 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 Peptidase_M16_C PF05193.21 183 NAAE01000001_00011 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 NAAE01000001_00011 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 NAAE01000001_00011 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 NAAE01000001_00011 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 NAAE01000001_00011 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 NAAE01000001_00011 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHO_dh PF01180.21 295 NAAE01000001_00012 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 NAAE01000001_00012 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 NAAE01000001_00012 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 NAAE01000001_00012 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 NAAE01000001_00012 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family ABC_membrane PF00664.23 274 NAAE01000001_00013 - 580 4.4e-48 164.3 8.4 1 1 3.6e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 NAAE01000001_00013 - 580 4.9e-31 108.1 0.1 1 1 5.5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 NAAE01000001_00013 - 580 6e-10 38.9 5.9 1 1 8.5e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 NAAE01000001_00013 - 580 0.00081 19.3 0.2 1 2 4.6 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 NAAE01000001_00013 - 580 0.00081 19.3 0.2 2 2 1.2e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 NAAE01000001_00013 - 580 0.0025 18.1 0.4 1 1 1.7e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 NAAE01000001_00013 - 580 0.0056 16.9 0.2 1 1 2.8e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 NAAE01000001_00013 - 580 0.0098 15.6 0.1 1 1 2.5e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 NAAE01000001_00013 - 580 0.024 15.0 0.3 1 3 1 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 NAAE01000001_00013 - 580 0.024 15.0 0.3 2 3 1.5e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 NAAE01000001_00013 - 580 0.024 15.0 0.3 3 3 0.91 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 NAAE01000001_00013 - 580 0.035 14.5 0.0 1 1 5.7e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 NAAE01000001_00013 - 580 0.094 12.5 0.7 1 2 4.6 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 NAAE01000001_00013 - 580 0.094 12.5 0.7 2 2 0.00012 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 114 NAAE01000001_00013 - 580 0.11 12.6 0.9 1 1 0.00033 0.53 10.4 0.9 2 42 369 417 368 550 0.69 50S ribosome-binding GTPase tRNA-synt_1e PF01406.19 301 NAAE01000001_00014 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 NAAE01000001_00014 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 NAAE01000001_00014 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 NAAE01000001_00014 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 NAAE01000001_00014 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 NAAE01000001_00014 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 NAAE01000001_00014 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 NAAE01000001_00014 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 NAAE01000001_00014 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 NAAE01000001_00014 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 NAAE01000001_00014 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 NAAE01000001_00014 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) MurJ PF03023.14 452 NAAE01000001_00015 - 483 1e-91 307.8 60.1 1 1 1.9e-95 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ Bunya_G2 PF03563.13 285 NAAE01000001_00015 - 483 1.5 8.0 7.4 1 1 0.00035 3.1 7.0 7.4 186 221 443 478 434 483 0.91 Bunyavirus glycoprotein G2 FapA PF03961.13 454 NAAE01000001_00016 - 619 3.5e-30 105.0 37.0 1 1 1.2e-33 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 NAAE01000001_00016 - 619 0.027 13.8 8.1 1 1 1.4e-05 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein Viral_P18 PF04521.13 122 NAAE01000001_00016 - 619 0.15 11.8 2.3 1 3 0.35 1.6e+03 -1.1 0.0 84 105 175 196 144 255 0.79 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 NAAE01000001_00016 - 619 0.15 11.8 2.3 2 3 0.0048 21 4.9 0.0 83 122 426 465 412 465 0.83 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 NAAE01000001_00016 - 619 0.15 11.8 2.3 3 3 0.0091 41 4.0 0.4 71 97 502 528 493 542 0.83 ssRNA positive strand viral 18kD cysteine rich protein APG6_N PF17675.1 133 NAAE01000001_00016 - 619 0.29 11.7 8.6 1 1 0.00031 1.4 9.5 8.6 30 123 436 526 426 546 0.84 Apg6 coiled-coil region HHH_5 PF14520.6 57 NAAE01000001_00017 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 NAAE01000001_00017 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 NAAE01000001_00017 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 NAAE01000001_00017 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 NAAE01000001_00017 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 NAAE01000001_00017 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 NAAE01000001_00017 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 NAAE01000001_00017 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 NAAE01000001_00017 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 NAAE01000001_00017 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 NAAE01000001_00017 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 NAAE01000001_00017 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 NAAE01000001_00017 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 NAAE01000001_00017 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 NAAE01000001_00017 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 NAAE01000001_00017 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 NAAE01000001_00017 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 NAAE01000001_00017 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 NAAE01000001_00017 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 NAAE01000001_00017 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 NAAE01000001_00017 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 NAAE01000001_00017 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda Dala_Dala_lig_C PF07478.13 204 NAAE01000001_00018 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 NAAE01000001_00018 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 NAAE01000001_00018 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 NAAE01000001_00018 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 NAAE01000001_00018 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 NAAE01000001_00018 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 NAAE01000001_00018 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 NAAE01000001_00018 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 NAAE01000001_00018 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain PhdYeFM_antitox PF02604.19 75 NAAE01000001_00019 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system Mur_ligase_M PF08245.12 192 NAAG01000003_00002 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 NAAG01000003_00002 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 NAAG01000003_00002 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain Abhydrolase_1 PF00561.20 257 NAAG01000003_00003 - 239 5.1e-09 36.2 0.0 1 2 1.3e-08 3.3e-05 23.7 0.0 3 95 28 112 26 120 0.87 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 257 NAAG01000003_00003 - 239 5.1e-09 36.2 0.0 2 2 0.00011 0.27 10.8 0.0 207 254 180 226 119 228 0.78 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 220 NAAG01000003_00003 - 239 6.4e-07 30.2 0.0 1 1 9.3e-10 2.4e-06 28.3 0.0 1 97 28 121 28 234 0.65 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 239 NAAG01000003_00003 - 239 2.5e-05 23.7 0.0 1 1 1.5e-08 3.9e-05 23.0 0.0 7 116 28 126 25 164 0.74 Serine aminopeptidase, S33 FSH1 PF03959.13 212 NAAG01000003_00003 - 239 0.0031 17.2 0.1 1 2 0.016 42 3.7 0.0 5 26 26 47 23 61 0.81 Serine hydrolase (FSH1) FSH1 PF03959.13 212 NAAG01000003_00003 - 239 0.0031 17.2 0.1 2 2 0.0001 0.26 10.9 0.0 151 201 176 223 85 225 0.74 Serine hydrolase (FSH1) Lipase_3 PF01764.25 142 NAAG01000003_00003 - 239 0.018 14.9 0.0 1 2 2e-05 0.051 13.5 0.0 44 83 57 108 17 113 0.74 Lipase (class 3) Lipase_3 PF01764.25 142 NAAG01000003_00003 - 239 0.018 14.9 0.0 2 2 1 2.7e+03 -1.9 0.0 46 71 167 192 141 194 0.65 Lipase (class 3) Abhydrolase_4 PF08386.10 103 NAAG01000003_00003 - 239 0.053 13.6 0.0 1 1 3.2e-05 0.083 13.0 0.0 32 65 182 215 169 238 0.78 TAP-like protein Rota_VP2 PF05087.12 884 NAAG01000003_00003 - 239 0.056 11.6 0.0 1 1 2.7e-05 0.069 11.3 0.0 724 781 52 109 43 136 0.81 Rotavirus VP2 protein PhdYeFM_antitox PF02604.19 75 NAAG01000003_00004 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system Dala_Dala_lig_C PF07478.13 204 NAAG01000003_00005 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 NAAG01000003_00005 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 NAAG01000003_00005 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 NAAG01000003_00005 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 NAAG01000003_00005 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 NAAG01000003_00005 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 NAAG01000003_00005 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 NAAG01000003_00005 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 NAAG01000003_00005 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain HHH_5 PF14520.6 57 NAAG01000003_00006 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 NAAG01000003_00006 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 NAAG01000003_00006 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 NAAG01000003_00006 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 NAAG01000003_00006 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 NAAG01000003_00006 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 NAAG01000003_00006 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 NAAG01000003_00006 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 NAAG01000003_00006 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 NAAG01000003_00006 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 NAAG01000003_00006 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 NAAG01000003_00006 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 NAAG01000003_00006 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 NAAG01000003_00006 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 NAAG01000003_00006 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 NAAG01000003_00006 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 NAAG01000003_00006 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 NAAG01000003_00006 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 NAAG01000003_00006 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 NAAG01000003_00006 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 NAAG01000003_00006 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 NAAG01000003_00006 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda FapA PF03961.13 454 NAAG01000003_00007 - 619 3.5e-30 105.0 37.0 1 1 1.2e-33 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 NAAG01000003_00007 - 619 0.027 13.8 8.1 1 1 1.4e-05 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein Viral_P18 PF04521.13 122 NAAG01000003_00007 - 619 0.15 11.8 2.3 1 3 0.35 1.6e+03 -1.1 0.0 84 105 175 196 144 255 0.79 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 NAAG01000003_00007 - 619 0.15 11.8 2.3 2 3 0.0048 21 4.9 0.0 83 122 426 465 412 465 0.83 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 NAAG01000003_00007 - 619 0.15 11.8 2.3 3 3 0.0091 41 4.0 0.4 71 97 502 528 493 542 0.83 ssRNA positive strand viral 18kD cysteine rich protein APG6_N PF17675.1 133 NAAG01000003_00007 - 619 0.29 11.7 8.6 1 1 0.00031 1.4 9.5 8.6 30 123 436 526 426 546 0.84 Apg6 coiled-coil region MurJ PF03023.14 452 NAAG01000003_00008 - 483 1e-91 307.8 60.1 1 1 1.9e-95 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ Bunya_G2 PF03563.13 285 NAAG01000003_00008 - 483 1.5 8.0 7.4 1 1 0.00035 3.1 7.0 7.4 186 221 443 478 434 483 0.91 Bunyavirus glycoprotein G2 tRNA-synt_1e PF01406.19 301 NAAG01000003_00009 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 NAAG01000003_00009 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 NAAG01000003_00009 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 NAAG01000003_00009 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 NAAG01000003_00009 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 NAAG01000003_00009 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 NAAG01000003_00009 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 NAAG01000003_00009 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 NAAG01000003_00009 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 NAAG01000003_00009 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 NAAG01000003_00009 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 NAAG01000003_00009 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) ABC_membrane PF00664.23 274 NAAG01000003_00010 - 580 4.4e-48 164.3 8.4 1 1 3.6e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 NAAG01000003_00010 - 580 4.9e-31 108.1 0.1 1 1 5.5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 NAAG01000003_00010 - 580 6e-10 38.9 5.9 1 1 8.5e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 NAAG01000003_00010 - 580 0.00081 19.3 0.2 1 2 4.6 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 NAAG01000003_00010 - 580 0.00081 19.3 0.2 2 2 1.2e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 NAAG01000003_00010 - 580 0.0025 18.1 0.4 1 1 1.7e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 NAAG01000003_00010 - 580 0.0056 16.9 0.2 1 1 2.8e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 NAAG01000003_00010 - 580 0.0098 15.6 0.1 1 1 2.5e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 NAAG01000003_00010 - 580 0.024 15.0 0.3 1 3 1 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 NAAG01000003_00010 - 580 0.024 15.0 0.3 2 3 1.5e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 NAAG01000003_00010 - 580 0.024 15.0 0.3 3 3 0.91 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 NAAG01000003_00010 - 580 0.035 14.5 0.0 1 1 5.7e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 NAAG01000003_00010 - 580 0.094 12.5 0.7 1 2 4.6 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 NAAG01000003_00010 - 580 0.094 12.5 0.7 2 2 0.00012 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 114 NAAG01000003_00010 - 580 0.11 12.6 0.9 1 1 0.00033 0.53 10.4 0.9 2 42 369 417 368 550 0.69 50S ribosome-binding GTPase DHO_dh PF01180.21 295 NAAG01000003_00011 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 NAAG01000003_00011 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 NAAG01000003_00011 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 NAAG01000003_00011 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 NAAG01000003_00011 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family Peptidase_M16_C PF05193.21 183 NAAG01000003_00012 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 NAAG01000003_00012 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 NAAG01000003_00012 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 NAAG01000003_00012 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 NAAG01000003_00012 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 NAAG01000003_00012 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHDPS PF00701.22 289 NAAG01000003_00013 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 NAAG01000003_00013 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 NAAG01000003_00013 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 adh_short_C2 PF13561.6 234 NAAG01000003_00014 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 NAAG01000003_00014 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 NAAG01000003_00014 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 NAAG01000003_00014 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 NAAG01000003_00014 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif DUF1129 PF06570.11 206 NAAG01000003_00015 - 101 0.24 10.9 5.2 1 1 3.7e-05 0.67 9.4 3.4 80 129 1 68 1 74 0.83 Protein of unknown function (DUF1129) Lactamase_B PF00753.27 197 NAAG01000003_00016 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 NAAG01000003_00016 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain NAD_synthase PF02540.17 242 NAAG01000003_00017 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 NAAG01000003_00017 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 NAAG01000003_00017 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 NAAG01000003_00017 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 NAAG01000003_00017 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 NAAG01000003_00017 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 NAAG01000003_00017 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 NAAG01000003_00017 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 NAAG01000003_00017 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family LpxK PF02606.14 327 NAAG01000003_00018 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 NAAG01000003_00018 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 NAAG01000003_00018 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 NAAG01000003_00018 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) PALP PF00291.25 294 NAAG01000003_00019 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 NAAG01000003_00019 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 NAAG01000003_00019 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 NAAG01000003_00019 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 NAAG01000003_00019 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 NAAG01000003_00019 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain CTP_transf_3 PF02348.19 221 NAAG01000003_00020 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 NAAG01000003_00020 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 NAAG01000003_00020 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 NAAG01000003_00020 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 NAAG01000003_00020 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain Mur_ligase_M PF08245.12 192 NAAH01000003_00002 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 NAAH01000003_00002 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 NAAH01000003_00002 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain Abhydrolase_1 PF00561.20 257 NAAH01000003_00003 - 239 5.1e-09 36.2 0.0 1 2 1.3e-08 3.3e-05 23.7 0.0 3 95 28 112 26 120 0.87 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 257 NAAH01000003_00003 - 239 5.1e-09 36.2 0.0 2 2 0.00011 0.27 10.8 0.0 207 254 180 226 119 228 0.78 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 220 NAAH01000003_00003 - 239 6.4e-07 30.2 0.0 1 1 9.3e-10 2.4e-06 28.3 0.0 1 97 28 121 28 234 0.65 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 239 NAAH01000003_00003 - 239 2.5e-05 23.7 0.0 1 1 1.5e-08 3.9e-05 23.0 0.0 7 116 28 126 25 164 0.74 Serine aminopeptidase, S33 FSH1 PF03959.13 212 NAAH01000003_00003 - 239 0.0031 17.2 0.1 1 2 0.016 42 3.7 0.0 5 26 26 47 23 61 0.81 Serine hydrolase (FSH1) FSH1 PF03959.13 212 NAAH01000003_00003 - 239 0.0031 17.2 0.1 2 2 0.0001 0.26 10.9 0.0 151 201 176 223 85 225 0.74 Serine hydrolase (FSH1) Lipase_3 PF01764.25 142 NAAH01000003_00003 - 239 0.018 14.9 0.0 1 2 2e-05 0.051 13.5 0.0 44 83 57 108 17 113 0.74 Lipase (class 3) Lipase_3 PF01764.25 142 NAAH01000003_00003 - 239 0.018 14.9 0.0 2 2 1 2.7e+03 -1.9 0.0 46 71 167 192 141 194 0.65 Lipase (class 3) Abhydrolase_4 PF08386.10 103 NAAH01000003_00003 - 239 0.053 13.6 0.0 1 1 3.2e-05 0.083 13.0 0.0 32 65 182 215 169 238 0.78 TAP-like protein Rota_VP2 PF05087.12 884 NAAH01000003_00003 - 239 0.056 11.6 0.0 1 1 2.7e-05 0.069 11.3 0.0 724 781 52 109 43 136 0.81 Rotavirus VP2 protein PhdYeFM_antitox PF02604.19 75 NAAH01000003_00004 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system Dala_Dala_lig_C PF07478.13 204 NAAH01000003_00005 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 NAAH01000003_00005 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 NAAH01000003_00005 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 NAAH01000003_00005 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 NAAH01000003_00005 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 NAAH01000003_00005 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 NAAH01000003_00005 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 NAAH01000003_00005 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 NAAH01000003_00005 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain HHH_5 PF14520.6 57 NAAH01000003_00006 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 NAAH01000003_00006 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 NAAH01000003_00006 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 NAAH01000003_00006 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 NAAH01000003_00006 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 NAAH01000003_00006 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 NAAH01000003_00006 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 NAAH01000003_00006 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 NAAH01000003_00006 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 NAAH01000003_00006 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 NAAH01000003_00006 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 NAAH01000003_00006 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 NAAH01000003_00006 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 NAAH01000003_00006 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 NAAH01000003_00006 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 NAAH01000003_00006 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 NAAH01000003_00006 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 NAAH01000003_00006 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 NAAH01000003_00006 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 NAAH01000003_00006 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 NAAH01000003_00006 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 NAAH01000003_00006 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda FapA PF03961.13 454 NAAH01000003_00007 - 619 3.5e-30 105.0 37.0 1 1 1.2e-33 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 NAAH01000003_00007 - 619 0.027 13.8 8.1 1 1 1.4e-05 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein Viral_P18 PF04521.13 122 NAAH01000003_00007 - 619 0.15 11.8 2.3 1 3 0.35 1.6e+03 -1.1 0.0 84 105 175 196 144 255 0.79 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 NAAH01000003_00007 - 619 0.15 11.8 2.3 2 3 0.0048 21 4.9 0.0 83 122 426 465 412 465 0.83 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 NAAH01000003_00007 - 619 0.15 11.8 2.3 3 3 0.0091 41 4.0 0.4 71 97 502 528 493 542 0.83 ssRNA positive strand viral 18kD cysteine rich protein APG6_N PF17675.1 133 NAAH01000003_00007 - 619 0.29 11.7 8.6 1 1 0.00031 1.4 9.5 8.6 30 123 436 526 426 546 0.84 Apg6 coiled-coil region MurJ PF03023.14 452 NAAH01000003_00008 - 483 1e-91 307.8 60.1 1 1 1.9e-95 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ Bunya_G2 PF03563.13 285 NAAH01000003_00008 - 483 1.5 8.0 7.4 1 1 0.00035 3.1 7.0 7.4 186 221 443 478 434 483 0.91 Bunyavirus glycoprotein G2 tRNA-synt_1e PF01406.19 301 NAAH01000003_00009 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 NAAH01000003_00009 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 NAAH01000003_00009 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 NAAH01000003_00009 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 NAAH01000003_00009 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 NAAH01000003_00009 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 NAAH01000003_00009 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 NAAH01000003_00009 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 NAAH01000003_00009 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 NAAH01000003_00009 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 NAAH01000003_00009 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 NAAH01000003_00009 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) ABC_membrane PF00664.23 274 NAAH01000003_00010 - 580 4.4e-48 164.3 8.4 1 1 3.6e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 NAAH01000003_00010 - 580 4.9e-31 108.1 0.1 1 1 5.5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 NAAH01000003_00010 - 580 6e-10 38.9 5.9 1 1 8.5e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 NAAH01000003_00010 - 580 0.00081 19.3 0.2 1 2 4.6 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 NAAH01000003_00010 - 580 0.00081 19.3 0.2 2 2 1.2e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 NAAH01000003_00010 - 580 0.0025 18.1 0.4 1 1 1.7e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 NAAH01000003_00010 - 580 0.0056 16.9 0.2 1 1 2.8e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 NAAH01000003_00010 - 580 0.0098 15.6 0.1 1 1 2.5e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 NAAH01000003_00010 - 580 0.024 15.0 0.3 1 3 1 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 NAAH01000003_00010 - 580 0.024 15.0 0.3 2 3 1.5e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 NAAH01000003_00010 - 580 0.024 15.0 0.3 3 3 0.91 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 NAAH01000003_00010 - 580 0.035 14.5 0.0 1 1 5.7e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 NAAH01000003_00010 - 580 0.094 12.5 0.7 1 2 4.6 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 NAAH01000003_00010 - 580 0.094 12.5 0.7 2 2 0.00012 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 114 NAAH01000003_00010 - 580 0.11 12.6 0.9 1 1 0.00033 0.53 10.4 0.9 2 42 369 417 368 550 0.69 50S ribosome-binding GTPase DHO_dh PF01180.21 295 NAAH01000003_00011 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 NAAH01000003_00011 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 NAAH01000003_00011 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 NAAH01000003_00011 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 NAAH01000003_00011 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family Peptidase_M16_C PF05193.21 183 NAAH01000003_00012 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 NAAH01000003_00012 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 NAAH01000003_00012 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 NAAH01000003_00012 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 NAAH01000003_00012 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 NAAH01000003_00012 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHDPS PF00701.22 289 NAAH01000003_00013 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 NAAH01000003_00013 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 NAAH01000003_00013 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 adh_short_C2 PF13561.6 234 NAAH01000003_00014 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 NAAH01000003_00014 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 NAAH01000003_00014 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 NAAH01000003_00014 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 NAAH01000003_00014 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif DUF1129 PF06570.11 206 NAAH01000003_00015 - 101 0.24 10.9 5.2 1 1 3.7e-05 0.67 9.4 3.4 80 129 1 68 1 74 0.83 Protein of unknown function (DUF1129) Lactamase_B PF00753.27 197 NAAH01000003_00016 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 NAAH01000003_00016 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain NAD_synthase PF02540.17 242 NAAH01000003_00017 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 NAAH01000003_00017 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 NAAH01000003_00017 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 NAAH01000003_00017 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 NAAH01000003_00017 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 NAAH01000003_00017 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 NAAH01000003_00017 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 NAAH01000003_00017 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 NAAH01000003_00017 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family LpxK PF02606.14 327 NAAH01000003_00018 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 NAAH01000003_00018 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 NAAH01000003_00018 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 NAAH01000003_00018 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) PALP PF00291.25 294 NAAH01000003_00019 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 NAAH01000003_00019 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 NAAH01000003_00019 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 NAAH01000003_00019 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 NAAH01000003_00019 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 NAAH01000003_00019 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain CTP_transf_3 PF02348.19 221 NAAH01000003_00020 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 NAAH01000003_00020 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 NAAH01000003_00020 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 NAAH01000003_00020 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 NAAH01000003_00020 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain MAF_flag10 PF01973.18 171 NAAH01000019_00001 - 462 3.7e-42 143.9 0.7 1 2 6.1e-46 5.4e-42 143.4 0.1 2 170 59 226 58 227 0.91 Protein of unknown function DUF115 MAF_flag10 PF01973.18 171 NAAH01000019_00001 - 462 3.7e-42 143.9 0.7 2 2 0.84 7.5e+03 -3.5 0.0 60 91 359 390 358 395 0.70 Protein of unknown function DUF115 Med15_fungi PF05397.12 112 NAAH01000019_00001 - 462 0.011 16.0 0.7 1 2 0.041 3.7e+02 1.4 0.0 78 108 260 290 243 292 0.83 Mediator complex subunit 15 Med15_fungi PF05397.12 112 NAAH01000019_00001 - 462 0.011 16.0 0.7 2 2 1.6e-05 0.15 12.4 0.2 56 105 339 388 325 394 0.85 Mediator complex subunit 15 GTP_EFTU PF00009.27 194 NC_006134_00001 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 NC_006134_00001 - 639 3.7e-23 81.6 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 NC_006134_00001 - 639 3.7e-23 81.6 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 NC_006134_00001 - 639 1.2e-16 60.5 0.0 1 1 1.7e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 NC_006134_00001 - 639 1.3e-13 50.8 0.1 1 1 1.6e-16 2.8e-13 49.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 NC_006134_00001 - 639 1.3e-06 28.5 0.2 1 2 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 NC_006134_00001 - 639 1.3e-06 28.5 0.2 2 2 4.9 8.8e+03 -3.2 0.0 67 87 261 286 255 313 0.59 50S ribosome-binding GTPase RF3_C PF16658.5 131 NC_006134_00001 - 639 0.0027 17.5 0.0 1 1 3.4e-06 0.0061 16.4 0.0 14 82 349 417 341 434 0.79 Class II release factor RF3, C-terminal domain GTP_EFTU_D2 PF03144.25 74 NC_006134_00001 - 639 0.012 16.0 0.0 1 1 1.4e-05 0.024 15.0 0.0 2 58 264 314 263 319 0.88 Elongation factor Tu domain 2 Septin PF00735.18 281 NC_006134_00001 - 639 0.02 14.2 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 NC_006134_00001 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 NC_006134_00001 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 NC_006134_00002 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 NC_006134_00002 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 NC_006134_00004 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 NC_006134_00004 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 NC_006134_00004 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain CtsR_C PF17727.1 72 NC_006134_00005 - 102 0.019 15.1 0.2 1 2 0.00017 3 8.0 0.0 3 38 31 66 27 73 0.86 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 NC_006134_00005 - 102 0.019 15.1 0.2 2 2 0.0014 24 5.1 0.0 28 49 74 95 71 101 0.84 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 NC_006134_00006 - 117 0.0057 16.0 1.4 1 3 6.3e-07 0.0057 16.0 1.4 18 43 3 28 1 30 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 NC_006134_00006 - 117 0.0057 16.0 1.4 2 3 1 9e+03 -3.8 0.3 16 22 52 58 51 61 0.49 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 NC_006134_00006 - 117 0.0057 16.0 1.4 3 3 0.77 6.9e+03 -3.4 0.9 17 29 76 88 74 92 0.65 Putative Flagellin, Flp1-like, domain vMSA PF00695.19 400 NC_006134_00006 - 117 1.9 7.5 5.4 1 1 0.00025 2.3 7.2 5.4 328 398 9 85 1 87 0.72 Major surface antigen from hepadnavirus LysE PF01810.18 193 NC_006134_00007 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 NC_006134_00007 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 NC_006134_00007 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 NC_006134_00007 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 NC_006134_00007 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 NC_006134_00007 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 NC_006134_00007 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 NC_006134_00007 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 NC_006134_00007 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 NC_006134_00008 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 NC_006134_00008 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 NC_006134_00008 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 NC_006134_00008 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 NC_006134_00008 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 NC_006134_00008 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 NC_006134_00009 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 NC_006134_00009 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 NC_006134_00010 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 NC_006134_00010 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 NC_006134_00010 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 NC_006134_00010 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 NC_006134_00010 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 NC_006134_00010 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 NC_006134_00011 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 NC_006134_00012 - 1932 3.1e-16 59.1 2.7 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 NC_006134_00012 - 1932 3.1e-16 59.1 2.7 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 NC_006134_00012 - 1932 3.1e-16 59.1 2.7 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1876 1924 1846 1925 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 NC_006134_00012 - 1932 4.9e-08 33.2 8.3 1 2 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 NC_006134_00012 - 1932 4.9e-08 33.2 8.3 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1799 1910 1725 1932 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 NC_006134_00012 - 1932 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 NC_006134_00012 - 1932 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 NC_006134_00012 - 1932 9.2e-06 25.5 1.8 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 NC_006134_00012 - 1932 9.2e-06 25.5 1.8 2 2 0.12 4.2e+02 0.6 0.0 119 150 1883 1916 1828 1931 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 NC_006134_00012 - 1932 3.7e-05 24.2 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 NC_006134_00012 - 1932 3.7e-05 24.2 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 664 701 655 716 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 NC_006134_00013 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 NC_006134_00013 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 NC_006134_00013 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 NC_006134_00013 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) Acetyltransf_7 PF13508.7 76 NC_006134_00014 - 246 0.00022 21.6 0.0 1 1 7.1e-08 0.00042 20.7 0.0 29 75 79 143 37 144 0.67 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 NC_006134_00014 - 246 0.0032 17.7 0.0 1 1 1.3e-06 0.0079 16.4 0.0 64 92 81 109 56 142 0.78 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 NC_006134_00014 - 246 0.0091 16.0 0.3 1 1 2.8e-06 0.017 15.2 0.3 24 67 171 214 154 218 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Relaxase PF03432.14 242 NC_006134_00015 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 NC_006134_00015 - 462 4.7e-10 39.5 7.4 2 2 0.0071 1.3e+02 2.0 5.4 119 183 326 395 318 430 0.69 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 NC_006134_00016 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 NC_006134_00016 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 NC_006134_00016 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 NC_006134_00016 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 NC_006134_00016 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 NC_006134_00016 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 NC_006134_00016 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 NC_006134_00016 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 NC_006134_00016 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 NC_006134_00016 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 NC_006134_00016 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 NC_006134_00017 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 NC_006134_00017 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 NC_006134_00017 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 NC_006134_00017 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 NC_006134_00017 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 NC_006134_00019 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 NC_006134_00019 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 NC_006134_00019 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 NC_006134_00019 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 NC_006134_00019 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 NC_006134_00020 - 92 0.0072 16.3 0.0 1 1 7.4e-07 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) Sdh_cyt PF01127.22 121 NC_006134_00021 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 NC_006134_00021 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 NC_006134_00021 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 NC_006134_00023 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 NC_006134_00024 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 NC_006134_00025 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 NC_006134_00025 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 NC_006134_00025 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 NC_006134_00025 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 NC_006134_00025 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 NC_006134_00025 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 NC_006134_00025 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 NC_006134_00025 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 NC_006134_00025 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 NC_006134_00025 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 NC_006134_00025 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 NC_006134_00025 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 NC_006134_00025 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 NC_006134_00026 - 204 2.5e-34 118.5 0.6 1 1 7.4e-38 3.3e-34 118.1 0.6 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 NC_006134_00026 - 204 0.025 14.3 0.6 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 NC_006134_00026 - 204 0.025 14.3 0.6 2 3 0.0021 9.6 6.1 0.0 2 36 117 152 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 NC_006134_00026 - 204 0.025 14.3 0.6 3 3 0.0036 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 NC_006134_00026 - 204 0.05 13.6 4.8 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 NC_006134_00026 - 204 0.05 13.6 4.8 2 3 1.5 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 NC_006134_00026 - 204 0.05 13.6 4.8 3 3 0.024 1.1e+02 3.0 0.1 39 55 159 175 153 177 0.91 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 NC_006134_00026 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 NC_006134_00026 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 NC_006134_00026 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 NC_006134_00027 - 135 0.00056 20.0 0.0 1 2 7.8e-08 0.0014 18.8 0.0 4 53 7 71 4 93 0.79 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 NC_006134_00027 - 135 0.00056 20.0 0.0 2 2 0.0096 1.7e+02 2.5 0.0 12 35 55 77 53 106 0.80 CRISPR associated protein Cas2 TrbC PF04956.13 99 NC_006134_00029 - 87 6.2e-13 48.8 6.8 1 1 7.4e-17 6.6e-13 48.7 6.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 NC_006134_00029 - 87 0.61 9.9 6.3 1 1 0.00015 1.3 8.9 6.2 108 135 60 87 10 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 NC_006134_00030 - 922 7.1e-51 173.2 0.4 1 1 2.7e-54 1.6e-50 172.1 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 NC_006134_00030 - 922 2.6e-21 75.7 1.0 1 1 7.4e-25 4.4e-21 74.9 1.0 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 NC_006134_00030 - 922 0.046 13.2 0.1 1 1 1.6e-05 0.097 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 NC_006134_00031 - 188 1.8e-31 108.5 0.0 1 1 3.2e-35 2.9e-31 107.9 0.0 2 88 24 122 23 122 0.89 Phage regulatory protein Rha (Phage_pRha) Y_Y_Y PF07495.13 66 NC_006134_00031 - 188 0.1 12.6 0.3 1 1 2e-05 0.18 11.8 0.3 19 63 126 174 122 177 0.80 Y_Y_Y domain PBECR2 PF18810.1 119 NC_006134_00032 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 SSB PF00436.25 104 NC_006134_00033 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 NC_006134_00034 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 NC_006134_00034 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 NC_006134_00034 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 NC_006134_00034 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 NC_006134_00034 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 NC_006134_00034 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 NC_006134_00034 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 NC_006134_00035 - 328 1e-28 101.1 13.2 1 1 5.6e-32 1.4e-28 100.6 13.2 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 NC_006134_00035 - 328 0.0082 16.3 2.4 1 3 0.45 1.1e+03 -0.2 0.0 30 54 134 158 116 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 NC_006134_00035 - 328 0.0082 16.3 2.4 2 3 8.2e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 NC_006134_00035 - 328 0.0082 16.3 2.4 3 3 2.2 5.7e+03 -2.5 0.0 60 83 300 323 291 327 0.69 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 NC_006134_00035 - 328 0.016 15.9 0.9 1 2 1.8 4.5e+03 -1.7 0.0 54 69 123 138 98 163 0.56 von Willebrand factor type A domain VWA_2 PF13519.6 107 NC_006134_00035 - 328 0.016 15.9 0.9 2 2 1.4e-05 0.036 14.7 0.2 31 84 208 270 197 309 0.85 von Willebrand factor type A domain KMP11 PF03037.16 90 NC_006134_00035 - 328 0.02 15.7 0.1 1 2 6.6e-05 0.17 12.7 0.0 8 56 91 139 88 174 0.82 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 NC_006134_00035 - 328 0.02 15.7 0.1 2 2 4.4 1.1e+04 -2.7 0.0 9 21 235 247 228 267 0.50 Kinetoplastid membrane protein 11 AATF-Che1 PF13339.6 139 NC_006134_00035 - 328 0.023 15.3 12.3 1 2 0.024 62 4.3 0.7 48 135 107 145 42 185 0.60 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 NC_006134_00035 - 328 0.023 15.3 12.3 2 2 1.1e-05 0.028 15.1 5.0 49 125 225 315 205 322 0.71 Apoptosis antagonizing transcription factor Tissue_fac PF01108.17 107 NC_006134_00035 - 328 0.029 14.2 0.1 1 1 2.4e-05 0.062 13.2 0.1 4 64 80 148 76 182 0.68 Tissue factor Allexi_40kDa PF05549.11 271 NC_006134_00035 - 328 1.2 8.6 6.3 1 2 0.045 1.1e+02 2.1 0.1 36 125 46 140 30 172 0.72 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 NC_006134_00035 - 328 1.2 8.6 6.3 2 2 0.00047 1.2 8.6 2.0 61 145 212 293 191 320 0.59 Allexivirus 40kDa protein TrbL PF04610.14 215 NC_006134_00036 - 330 1.4e-29 103.5 34.4 1 2 1.5e-33 1.4e-29 103.5 34.4 1 214 38 250 38 251 0.92 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 NC_006134_00036 - 330 1.4e-29 103.5 34.4 2 2 0.055 4.9e+02 0.3 0.4 35 86 245 293 241 324 0.56 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 NC_006134_00036 - 330 0.097 12.5 1.3 1 2 0.27 2.4e+03 -1.6 0.1 39 51 69 81 60 113 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 NC_006134_00036 - 330 0.097 12.5 1.3 2 2 2.4e-05 0.21 11.4 0.1 27 81 230 286 198 298 0.74 T-cell leukemia translocation-altered Trep_dent_lipo PF09710.10 397 NC_006134_00037 - 54 0.034 13.1 1.0 1 1 5.2e-06 0.031 13.2 1.0 3 25 3 24 1 53 0.80 Treponema clustered lipoprotein (Trep_dent_lipo) La_HTH_kDCL PF18177.1 90 NC_006134_00037 - 54 0.19 12.0 0.0 1 1 3.6e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain PsbT PF01405.17 29 NC_006134_00037 - 54 1.1 9.1 5.2 1 1 0.00027 1.6 8.6 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 NC_006134_00038 - 219 1.6e-52 178.5 0.5 1 1 1.9e-56 1.7e-52 178.4 0.5 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 NC_006134_00038 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 NC_006134_00039 - 296 4.2e-56 190.0 1.7 1 1 1.1e-59 6.7e-56 189.3 1.7 2 211 31 271 30 271 0.92 Conjugal transfer protein TraE PF05309.11 182 NC_006134_00039 - 296 0.022 14.2 0.1 1 1 6.6e-06 0.039 13.3 0.1 107 171 89 154 86 161 0.83 TraE protein Rho_RNA_bind PF07497.12 73 NC_006134_00039 - 296 0.068 13.0 0.0 1 2 1.5 9.2e+03 -3.4 0.0 9 22 79 92 76 97 0.79 Rho termination factor, RNA-binding domain Rho_RNA_bind PF07497.12 73 NC_006134_00039 - 296 0.068 13.0 0.0 2 2 3.3e-05 0.2 11.6 0.0 21 49 241 269 232 288 0.84 Rho termination factor, RNA-binding domain TrbI PF03743.14 187 NC_006134_00040 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.4e+03 -3.4 0.3 136 154 140 166 120 172 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 NC_006134_00040 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 NC_006134_00040 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease T2SSE PF00437.20 273 NC_006134_00041 - 335 1.5e-54 184.9 0.0 1 1 3.1e-57 1.7e-54 184.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 NC_006134_00041 - 335 7e-05 23.4 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 NC_006134_00041 - 335 0.00011 21.6 0.0 1 1 3.1e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 NC_006134_00041 - 335 0.00029 20.4 0.0 1 1 9.1e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 NC_006134_00041 - 335 0.0014 18.9 0.0 1 1 4.6e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 NC_006134_00041 - 335 0.0014 18.4 0.0 1 1 4e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 NC_006134_00041 - 335 0.0025 17.6 0.0 1 1 9.5e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 NC_006134_00041 - 335 0.0035 17.3 0.0 1 1 1.3e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 NC_006134_00041 - 335 0.0055 15.7 0.0 1 1 1.4e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 NC_006134_00041 - 335 0.0073 16.2 0.0 1 1 2.2e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 NC_006134_00041 - 335 0.0087 15.4 0.0 1 1 2.5e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 NC_006134_00041 - 335 0.0092 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 NC_006134_00041 - 335 0.019 15.1 0.0 1 1 6.3e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 NC_006134_00041 - 335 0.021 13.8 0.0 1 1 6.1e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 NC_006134_00041 - 335 0.022 14.8 0.1 1 1 9.7e-05 0.054 13.5 0.0 5 50 147 186 135 244 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 NC_006134_00041 - 335 0.024 14.4 0.0 1 1 9e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 NC_006134_00041 - 335 0.026 14.2 0.0 1 1 9.6e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 NC_006134_00041 - 335 0.037 13.5 0.0 1 1 0.00011 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 NC_006134_00041 - 335 0.039 14.0 0.1 1 1 0.00019 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 NC_006134_00041 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 NC_006134_00041 - 335 0.046 13.0 0.0 1 1 0.00014 0.08 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin RNA_helicase PF00910.22 107 NC_006134_00041 - 335 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase PRK PF00485.18 197 NC_006134_00041 - 335 0.056 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 NC_006134_00041 - 335 0.066 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 NC_006134_00041 - 335 0.074 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 NC_006134_00041 - 335 0.088 12.7 0.0 1 1 0.00035 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 NC_006134_00041 - 335 0.097 12.6 0.5 1 1 0.00043 0.24 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 NC_006134_00041 - 335 0.11 12.4 0.1 1 1 0.00041 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 NC_006134_00041 - 335 0.13 12.8 0.1 1 1 0.00069 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 NC_006134_00041 - 335 0.15 11.7 0.0 1 1 0.00042 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 NC_006134_00041 - 335 0.15 11.8 0.0 1 1 0.00043 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 NC_006134_00041 - 335 0.35 11.3 3.8 1 2 2.6 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 NC_006134_00041 - 335 0.35 11.3 3.8 2 2 0.00066 0.37 11.3 1.3 22 37 163 178 160 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 NC_006134_00042 - 603 1.4e-105 353.8 0.1 1 1 3.2e-109 1.9e-105 353.4 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 NC_006134_00042 - 603 1.1e-24 86.8 0.0 1 1 3.5e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 NC_006134_00042 - 603 6.2e-16 58.3 0.0 1 2 1.2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 NC_006134_00042 - 603 6.2e-16 58.3 0.0 2 2 1.9e-14 1.1e-10 41.0 0.0 187 370 347 532 308 543 0.80 Type IV secretion-system coupling protein DNA-binding domain Cag12 PF13117.6 97 NC_006134_00043 - 143 1e-16 61.2 0.1 1 1 1.5e-20 1.3e-16 60.8 0.1 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 NC_006134_00043 - 143 0.062 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 NC_006134_00044 - 252 9.5e-39 132.8 1.2 1 1 6.7e-43 1.2e-38 132.5 1.2 1 154 25 190 25 192 0.91 TrbM PRELI PF04707.14 157 NC_006134_00045 - 266 0.028 14.2 2.2 1 2 0.49 1.8e+03 -1.4 0.1 122 129 35 42 4 73 0.51 PRELI-like family PRELI PF04707.14 157 NC_006134_00045 - 266 0.028 14.2 2.2 2 2 9.1e-06 0.033 14.0 0.3 96 155 84 148 79 150 0.87 PRELI-like family Prismane PF03063.20 511 NC_006134_00045 - 266 0.14 10.8 0.0 1 1 5.3e-05 0.19 10.4 0.0 75 191 94 216 78 231 0.73 Prismane/CO dehydrogenase family TACC_C PF05010.14 201 NC_006134_00045 - 266 2.3 8.0 10.0 1 1 0.00099 3.6 7.3 7.9 13 125 2 113 1 138 0.78 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Mod_r PF07200.13 146 NC_006134_00045 - 266 4.6 7.4 12.1 1 2 0.014 50 4.0 9.2 10 135 15 161 2 165 0.63 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 NC_006134_00045 - 266 4.6 7.4 12.1 2 2 0.47 1.7e+03 -1.0 0.0 65 88 207 230 204 259 0.71 Modifier of rudimentary (Mod(r)) protein IFT20 PF14931.6 119 NC_006134_00045 - 266 5.4 7.2 10.4 1 3 0.15 5.2e+02 0.8 0.3 25 46 24 45 1 56 0.50 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 NC_006134_00045 - 266 5.4 7.2 10.4 2 3 0.00037 1.3 9.2 0.8 25 54 90 119 82 127 0.89 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 NC_006134_00045 - 266 5.4 7.2 10.4 3 3 0.042 1.5e+02 2.5 0.2 23 43 121 141 116 165 0.75 Intraflagellar transport complex B, subunit 20 CdhD PF03599.16 386 NC_006134_00047 - 206 0.0071 15.1 0.0 1 1 1.9e-06 0.012 14.4 0.0 283 358 11 87 2 96 0.87 CO dehydrogenase/acetyl-CoA synthase delta subunit Redoxin PF08534.10 147 NC_006134_00047 - 206 0.028 14.1 0.9 1 2 0.082 4.9e+02 0.4 0.1 119 146 11 36 4 37 0.82 Redoxin Redoxin PF08534.10 147 NC_006134_00047 - 206 0.028 14.1 0.9 2 2 3e-05 0.18 11.5 0.1 49 76 144 173 138 191 0.79 Redoxin YnfE PF17452.2 78 NC_006134_00047 - 206 0.12 12.6 0.1 1 3 2.1e-05 0.12 12.6 0.1 11 33 10 32 5 47 0.88 Uncharacterized YnfE-like YnfE PF17452.2 78 NC_006134_00047 - 206 0.12 12.6 0.1 2 3 0.31 1.8e+03 -0.7 0.3 36 50 143 157 136 185 0.64 Uncharacterized YnfE-like YnfE PF17452.2 78 NC_006134_00047 - 206 0.12 12.6 0.1 3 3 0.84 5e+03 -2.1 1.5 26 38 184 195 170 205 0.48 Uncharacterized YnfE-like Topoisom_bac PF01131.20 413 NC_006134_00048 - 730 2.7e-97 326.4 7.4 1 1 3.6e-100 3.8e-97 325.9 7.4 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 NC_006134_00048 - 730 7.1e-12 45.5 2.2 1 2 1.3e-14 1.4e-11 44.5 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 NC_006134_00048 - 730 7.1e-12 45.5 2.2 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 NC_006134_00048 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 NC_006134_00048 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 NC_006134_00048 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 NC_006134_00048 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 NC_006134_00048 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 NC_006134_00048 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 NC_006134_00048 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 NC_006134_00048 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 NC_006134_00048 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 NC_006134_00048 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 NC_006134_00048 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 NC_006134_00048 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 NC_006134_00048 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 NC_006134_00048 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 NC_006134_00048 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 NC_006134_00048 - 730 0.096 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 NC_006134_00048 - 730 0.096 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain EF-hand_8 PF13833.6 55 NC_006134_00048 - 730 0.1 12.5 0.0 1 1 0.00031 0.33 10.8 0.0 26 53 94 121 89 123 0.90 EF-hand domain pair HTH_34 PF13601.6 80 NC_006134_00048 - 730 0.44 10.8 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 NC_006134_00048 - 730 0.44 10.8 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 NC_006134_00048 - 730 0.44 10.8 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 NC_006134_00048 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 NC_006134_00048 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 NC_006134_00048 - 730 0.63 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 NC_006134_00048 - 730 0.63 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 NC_006134_00048 - 730 0.74 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 NC_006134_00048 - 730 0.74 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 NC_006134_00048 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 NC_006134_00048 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 NC_006134_00048 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 NC_006134_00048 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 NC_006134_00049 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 NC_006134_00049 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 NC_006135_00001 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 NC_006135_00001 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 NC_006135_00001 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 NC_006135_00001 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 NC_006135_00001 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 NC_006135_00001 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 NC_006135_00001 - 639 0.00029 21.1 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 NC_006135_00001 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 NC_006135_00001 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 NC_006135_00001 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 NC_006135_00001 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 NC_006135_00002 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 NC_006135_00002 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 NC_006135_00004 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 NC_006135_00004 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 NC_006135_00004 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 NC_006135_00005 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 NC_006135_00005 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 NC_006135_00005 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 NC_006135_00005 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 NC_006135_00006 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 NC_006135_00006 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 NC_006135_00007 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 NC_006135_00007 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 NC_006135_00007 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 NC_006135_00007 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 NC_006135_00007 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 NC_006135_00007 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 NC_006135_00007 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 NC_006135_00007 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 NC_006135_00007 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 NC_006135_00008 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 NC_006135_00008 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 NC_006135_00008 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 NC_006135_00008 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 NC_006135_00008 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 NC_006135_00008 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 NC_006135_00009 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 NC_006135_00009 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 NC_006135_00010 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 NC_006135_00010 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 NC_006135_00010 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 NC_006135_00010 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 NC_006135_00010 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 NC_006135_00010 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 NC_006135_00011 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 NC_006135_00012 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 NC_006135_00012 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 NC_006135_00012 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 NC_006135_00012 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 NC_006135_00012 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 NC_006135_00012 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 NC_006135_00012 - 1932 9.9e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 NC_006135_00012 - 1932 9.9e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 NC_006135_00012 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 NC_006135_00012 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 NC_006135_00012 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 NC_006135_00012 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 NC_006135_00013 - 234 0.0008 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 NC_006135_00013 - 234 0.033 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 NC_006135_00014 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 NC_006135_00014 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 NC_006135_00015 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 NC_006135_00015 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 NC_006135_00015 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 NC_006135_00015 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 NC_006135_00015 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 NC_006135_00015 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 NC_006135_00015 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 NC_006135_00015 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 NC_006135_00015 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 NC_006135_00015 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 NC_006135_00015 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 NC_006135_00016 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 NC_006135_00016 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 NC_006135_00016 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 NC_006135_00016 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 NC_006135_00016 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 NC_006135_00018 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 NC_006135_00018 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 NC_006135_00019 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 NC_006135_00019 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 NC_006135_00019 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 NC_006135_00019 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 NC_006135_00019 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 NC_006135_00020 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 NC_006135_00020 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) UBA_6 PF18039.1 42 NC_006135_00021 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 NC_006135_00021 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 NC_006135_00021 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 NC_006135_00021 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 NC_006135_00022 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 NC_006135_00022 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 NC_006135_00022 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 NC_006135_00024 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 NC_006135_00025 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 NC_006135_00026 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 NC_006135_00026 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 NC_006135_00026 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 NC_006135_00026 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 NC_006135_00026 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 NC_006135_00026 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 NC_006135_00026 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 NC_006135_00026 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 NC_006135_00026 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 NC_006135_00026 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 NC_006135_00026 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 NC_006135_00026 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 NC_006135_00027 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 NC_006135_00027 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 NC_006135_00027 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 NC_006135_00027 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 NC_006135_00027 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 NC_006135_00027 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 NC_006135_00027 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 NC_006135_00027 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 NC_006135_00027 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 NC_006135_00027 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 NC_006135_00028 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 NC_006135_00028 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 NC_006135_00028 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 NC_006135_00030 - 87 3.5e-13 49.6 6.7 1 1 4.5e-17 4e-13 49.4 6.7 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 NC_006135_00030 - 87 0.17 11.8 4.4 1 1 2.6e-05 0.23 11.3 4.4 78 135 37 87 9 87 0.70 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 NC_006135_00031 - 883 4.8e-50 170.5 0.5 1 1 1.8e-53 1.1e-49 169.4 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 NC_006135_00031 - 883 6.8e-21 74.3 1.2 1 1 2e-24 1.2e-20 73.5 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 NC_006135_00031 - 883 0.045 13.2 0.1 1 1 1.5e-05 0.092 12.2 0.1 53 153 624 844 622 851 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 NC_006135_00033 - 162 1.5e-21 76.7 0.1 1 1 1.5e-25 2.6e-21 76.0 0.1 16 88 12 96 5 96 0.79 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 NC_006135_00034 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 NC_006135_00034 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 NC_006135_00034 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 NC_006135_00034 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 NC_006135_00034 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 NC_006135_00034 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 NC_006135_00034 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 NC_006135_00034 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 NC_006135_00034 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 NC_006135_00034 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 NC_006135_00034 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 NC_006135_00034 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 NC_006135_00034 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 NC_006135_00034 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 NC_006135_00035 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 NC_006135_00036 - 91 0.00046 19.9 6.9 1 2 5.3e-08 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 NC_006135_00036 - 91 0.00046 19.9 6.9 2 2 0.014 1.3e+02 2.5 0.2 31 52 57 78 56 80 0.82 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 NC_006135_00036 - 91 0.0053 17.3 1.0 1 1 6.9e-07 0.0062 17.1 1.0 21 87 9 81 1 85 0.90 FliG N-terminal domain T4SS PF07996.11 197 NC_006135_00037 - 323 7.9e-29 101.5 13.4 1 1 4e-32 1e-28 101.1 13.4 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 NC_006135_00037 - 323 0.0081 16.3 0.6 1 2 0.99 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 NC_006135_00037 - 323 0.0081 16.3 0.6 2 2 1.2e-05 0.03 14.5 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 NC_006135_00037 - 323 0.014 16.1 5.0 1 2 0.046 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 NC_006135_00037 - 323 0.014 16.1 5.0 2 2 5.3e-06 0.014 16.1 5.0 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 NC_006135_00037 - 323 0.043 14.5 0.8 1 2 2.2 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 NC_006135_00037 - 323 0.043 14.5 0.8 2 2 1.7e-05 0.043 14.5 0.8 32 84 209 270 202 296 0.83 von Willebrand factor type A domain KNOX2 PF03791.13 48 NC_006135_00037 - 323 0.07 12.6 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 NC_006135_00037 - 323 0.07 12.6 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain THOC7 PF05615.13 132 NC_006135_00037 - 323 1.2 9.4 11.3 1 2 0.00061 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 NC_006135_00037 - 323 1.2 9.4 11.3 2 2 0.17 4.4e+02 1.1 6.3 16 71 231 294 202 315 0.50 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 NC_006135_00037 - 323 3.5 7.1 7.2 1 2 0.19 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 NC_006135_00037 - 323 3.5 7.1 7.2 2 2 0.00046 1.2 8.6 3.3 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein TrbL PF04610.14 215 NC_006135_00038 - 281 1.4e-31 110.0 32.1 1 1 1e-35 1.9e-31 109.5 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein Trep_dent_lipo PF09710.10 397 NC_006135_00039 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 NC_006135_00039 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 NC_006135_00040 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 NC_006135_00040 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 NC_006135_00041 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 NC_006135_00041 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 NC_006135_00041 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 NC_006135_00042 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 NC_006135_00042 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 NC_006135_00043 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 NC_006135_00043 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 NC_006135_00043 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 NC_006135_00043 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 NC_006135_00043 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 NC_006135_00043 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 NC_006135_00043 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 NC_006135_00043 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 NC_006135_00043 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 NC_006135_00043 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 NC_006135_00043 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 NC_006135_00043 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 NC_006135_00043 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 NC_006135_00043 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 NC_006135_00043 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 NC_006135_00043 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 NC_006135_00043 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 NC_006135_00043 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 NC_006135_00043 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 NC_006135_00043 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 NC_006135_00043 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 NC_006135_00043 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 NC_006135_00043 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 NC_006135_00043 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 NC_006135_00043 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 NC_006135_00043 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 NC_006135_00043 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 NC_006135_00043 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 NC_006135_00043 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 NC_006135_00043 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 NC_006135_00043 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 NC_006135_00043 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 NC_006135_00044 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 NC_006135_00044 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 NC_006135_00044 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 NC_006135_00044 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 NC_006135_00044 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 NC_006135_00045 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 NC_006135_00045 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 NC_006135_00045 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 NC_006135_00045 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 NC_006135_00045 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 NC_006135_00046 - 143 5.7e-29 101.1 0.5 1 1 3.6e-33 6.4e-29 100.9 0.5 1 90 24 115 24 139 0.90 TrbM PRELI PF04707.14 157 NC_006135_00047 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 NC_006135_00047 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 NC_006135_00047 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 NC_006135_00047 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 NC_006135_00047 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 NC_006135_00047 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 NC_006135_00049 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 NC_006135_00049 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 NC_006135_00050 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 NC_006135_00050 - 730 5.6e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 NC_006135_00050 - 730 5.6e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 NC_006135_00050 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 NC_006135_00050 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 NC_006135_00050 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 NC_006135_00050 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 NC_006135_00050 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 NC_006135_00050 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 NC_006135_00050 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 NC_006135_00050 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 NC_006135_00050 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 NC_006135_00050 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 NC_006135_00050 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 NC_006135_00050 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 NC_006135_00050 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 NC_006135_00050 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 NC_006135_00050 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 NC_006135_00050 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 NC_006135_00050 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 NC_006135_00050 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 NC_006135_00050 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 NC_006135_00050 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 NC_006135_00050 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 NC_006135_00050 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 NC_006135_00050 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 NC_006135_00050 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 NC_006135_00050 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 NC_006135_00050 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 NC_006135_00050 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 NC_006135_00050 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 NC_006135_00050 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 NC_006135_00050 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 NC_006135_00050 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 NC_006135_00051 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 NC_006135_00051 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain Acetyltransf_7 PF13508.7 76 NC_007141_00002 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 NC_007141_00002 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 NC_007141_00003 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 NC_007141_00003 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 NC_007141_00004 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 NC_007141_00004 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 NC_007141_00004 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 NC_007141_00004 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 NC_007141_00004 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 NC_007141_00004 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 NC_007141_00004 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 NC_007141_00004 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 NC_007141_00004 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 NC_007141_00004 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 NC_007141_00004 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 NC_007141_00005 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 NC_007141_00005 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 NC_007141_00005 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 NC_007141_00005 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 NC_007141_00005 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 NC_007141_00007 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 NC_007141_00007 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 NC_007141_00008 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 NC_007141_00008 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 NC_007141_00008 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 NC_007141_00008 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 NC_007141_00008 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 NC_007141_00009 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 NC_007141_00009 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) UBA_6 PF18039.1 42 NC_007141_00010 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 NC_007141_00010 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 NC_007141_00010 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 NC_007141_00010 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 NC_007141_00011 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 NC_007141_00011 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 NC_007141_00011 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 NC_007141_00013 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 NC_007141_00014 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 NC_007141_00015 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 NC_007141_00015 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 NC_007141_00015 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 NC_007141_00015 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 NC_007141_00015 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 NC_007141_00015 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 NC_007141_00015 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 NC_007141_00015 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 NC_007141_00015 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 NC_007141_00015 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 NC_007141_00015 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 NC_007141_00015 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 NC_007141_00016 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 NC_007141_00016 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 NC_007141_00016 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 NC_007141_00016 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 NC_007141_00016 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 NC_007141_00016 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 NC_007141_00016 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 NC_007141_00016 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 NC_007141_00016 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 NC_007141_00016 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 NC_007141_00017 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 NC_007141_00017 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 NC_007141_00017 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 NC_007141_00019 - 87 3.5e-13 49.6 6.7 1 1 4.5e-17 4e-13 49.4 6.7 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 NC_007141_00019 - 87 0.17 11.8 4.4 1 1 2.6e-05 0.23 11.3 4.4 78 135 37 87 9 87 0.70 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 NC_007141_00020 - 922 4.9e-50 170.5 0.5 1 1 1.9e-53 1.2e-49 169.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 NC_007141_00020 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 NC_007141_00020 - 922 0.048 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 NC_007141_00021 - 188 2e-29 102.0 0.1 1 1 1.9e-33 3.3e-29 101.3 0.1 2 88 24 122 23 122 0.83 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 NC_007141_00022 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 NC_007141_00022 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 NC_007141_00022 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 NC_007141_00022 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 NC_007141_00022 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 NC_007141_00022 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 NC_007141_00022 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 NC_007141_00022 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 NC_007141_00022 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 NC_007141_00022 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 NC_007141_00022 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 NC_007141_00022 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 NC_007141_00022 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 NC_007141_00022 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 NC_007141_00023 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 NC_007141_00024 - 91 0.00046 19.9 6.9 1 2 5.3e-08 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 NC_007141_00024 - 91 0.00046 19.9 6.9 2 2 0.014 1.3e+02 2.5 0.2 31 52 57 78 56 80 0.82 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 NC_007141_00024 - 91 0.0053 17.3 1.0 1 1 6.9e-07 0.0062 17.1 1.0 21 87 9 81 1 85 0.90 FliG N-terminal domain T4SS PF07996.11 197 NC_007141_00025 - 323 7.9e-29 101.5 13.4 1 1 4e-32 1e-28 101.1 13.4 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 NC_007141_00025 - 323 0.0081 16.3 0.6 1 2 0.99 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 NC_007141_00025 - 323 0.0081 16.3 0.6 2 2 1.2e-05 0.03 14.5 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 NC_007141_00025 - 323 0.014 16.1 5.0 1 2 0.046 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 NC_007141_00025 - 323 0.014 16.1 5.0 2 2 5.3e-06 0.014 16.1 5.0 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 NC_007141_00025 - 323 0.043 14.5 0.8 1 2 2.2 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 NC_007141_00025 - 323 0.043 14.5 0.8 2 2 1.7e-05 0.043 14.5 0.8 32 84 209 270 202 296 0.83 von Willebrand factor type A domain KNOX2 PF03791.13 48 NC_007141_00025 - 323 0.07 12.6 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 NC_007141_00025 - 323 0.07 12.6 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain THOC7 PF05615.13 132 NC_007141_00025 - 323 1.2 9.4 11.3 1 2 0.00061 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 NC_007141_00025 - 323 1.2 9.4 11.3 2 2 0.17 4.4e+02 1.1 6.3 16 71 231 294 202 315 0.50 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 NC_007141_00025 - 323 3.5 7.1 7.2 1 2 0.19 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 NC_007141_00025 - 323 3.5 7.1 7.2 2 2 0.00046 1.2 8.6 3.3 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein TrbL PF04610.14 215 NC_007141_00026 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 NC_007141_00026 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 NC_007141_00026 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 NC_007141_00026 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 NC_007141_00026 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 NC_007141_00027 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 NC_007141_00027 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 NC_007141_00028 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 NC_007141_00028 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 NC_007141_00029 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 NC_007141_00029 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 NC_007141_00029 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 NC_007141_00030 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 NC_007141_00030 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 NC_007141_00031 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 NC_007141_00031 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 NC_007141_00031 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 NC_007141_00031 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 NC_007141_00031 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 NC_007141_00031 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 NC_007141_00031 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 NC_007141_00031 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 NC_007141_00031 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 NC_007141_00031 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 NC_007141_00031 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 NC_007141_00031 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 NC_007141_00031 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 NC_007141_00031 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 NC_007141_00031 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 NC_007141_00031 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 NC_007141_00031 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 NC_007141_00031 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 NC_007141_00031 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 NC_007141_00031 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 NC_007141_00031 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 NC_007141_00031 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 NC_007141_00031 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 NC_007141_00031 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 NC_007141_00031 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 NC_007141_00031 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 NC_007141_00031 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 NC_007141_00031 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 NC_007141_00031 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 NC_007141_00031 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 NC_007141_00031 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 NC_007141_00031 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 NC_007141_00032 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 NC_007141_00032 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 NC_007141_00032 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 NC_007141_00032 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 NC_007141_00032 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 NC_007141_00033 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 NC_007141_00033 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 NC_007141_00033 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 NC_007141_00033 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 NC_007141_00033 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 NC_007141_00034 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 NC_007141_00035 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 NC_007141_00035 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 NC_007141_00035 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 NC_007141_00035 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 NC_007141_00035 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 NC_007141_00035 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 NC_007141_00037 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 NC_007141_00037 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 NC_007141_00038 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 NC_007141_00038 - 730 5.6e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 NC_007141_00038 - 730 5.6e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 NC_007141_00038 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 NC_007141_00038 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 NC_007141_00038 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 NC_007141_00038 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 NC_007141_00038 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 NC_007141_00038 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 NC_007141_00038 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 NC_007141_00038 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 NC_007141_00038 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 NC_007141_00038 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 NC_007141_00038 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 NC_007141_00038 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 NC_007141_00038 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 NC_007141_00038 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 NC_007141_00038 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 NC_007141_00038 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 NC_007141_00038 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 NC_007141_00038 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 NC_007141_00038 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 NC_007141_00038 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 NC_007141_00038 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 NC_007141_00038 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 NC_007141_00038 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 NC_007141_00038 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 NC_007141_00038 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 NC_007141_00038 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 NC_007141_00038 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 NC_007141_00038 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 NC_007141_00038 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 NC_007141_00038 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 NC_007141_00038 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 NC_007141_00039 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 NC_007141_00039 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 NC_007141_00041 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 NC_007141_00041 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 NC_007141_00041 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 NC_007141_00041 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 NC_007141_00041 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 NC_007141_00041 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 NC_007141_00041 - 639 0.00029 21.1 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 NC_007141_00041 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 NC_007141_00041 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 NC_007141_00041 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 NC_007141_00041 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 NC_007141_00042 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 NC_007141_00042 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 NC_007141_00044 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 NC_007141_00044 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 NC_007141_00044 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain CtsR_C PF17727.1 72 NC_007141_00045 - 116 0.039 14.1 0.2 1 2 0.00024 4.3 7.5 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 NC_007141_00045 - 116 0.039 14.1 0.2 2 2 0.0022 40 4.4 0.0 28 48 74 94 71 105 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 NC_007141_00046 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 NC_007141_00046 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain DUF1516 PF07457.11 108 NC_007141_00047 - 91 0.0042 17.3 0.4 1 1 8.2e-07 0.0049 17.0 0.4 39 87 7 53 1 69 0.77 Protein of unknown function (DUF1516) LysE PF01810.18 193 NC_007141_00047 - 91 0.0049 16.4 0.1 1 1 9.5e-07 0.0057 16.1 0.1 36 93 5 62 3 80 0.88 LysE type translocator DUF2873 PF11395.8 43 NC_007141_00047 - 91 1 9.3 0.1 1 3 0.00017 1 9.3 0.1 1 20 1 20 1 23 0.92 Protein of unknown function (DUF2873) DUF2873 PF11395.8 43 NC_007141_00047 - 91 1 9.3 0.1 2 3 0.16 9.8e+02 -0.3 0.4 14 27 31 41 27 48 0.59 Protein of unknown function (DUF2873) DUF2873 PF11395.8 43 NC_007141_00047 - 91 1 9.3 0.1 3 3 1.7 1e+04 -3.5 7.8 8 19 76 87 70 89 0.84 Protein of unknown function (DUF2873) S1_2 PF13509.6 61 NC_007141_00048 - 89 0.093 12.8 0.5 1 2 4.7e-05 0.85 9.7 0.1 5 37 10 44 8 54 0.86 S1 domain S1_2 PF13509.6 61 NC_007141_00048 - 89 0.093 12.8 0.5 2 2 0.0067 1.2e+02 2.8 0.1 11 34 43 68 39 79 0.78 S1 domain DUF4044 PF13253.6 33 NC_007141_00049 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 NC_007141_00049 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 NC_007141_00049 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 NC_007141_00049 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 NC_007141_00049 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 NC_007141_00049 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 NC_007141_00050 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 NC_007141_00050 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 NC_007141_00051 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 NC_007141_00051 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 NC_007141_00051 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 NC_007141_00051 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 NC_007141_00051 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 NC_007141_00051 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 NC_007141_00052 - 88 5.4e-07 29.9 1.0 1 1 3.3e-11 5.9e-07 29.8 1.0 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG PDDEXK_9 PF08011.11 105 NC_007141_00053 - 159 0.017 15.0 0.2 1 1 1.8e-06 0.032 14.1 0.2 11 77 38 106 34 128 0.82 PD-(D/E)XK nuclease superfamily DUF5445 PF17520.2 52 NC_007141_00054 - 77 1 9.2 12.2 1 1 7.3e-05 1.3 8.9 11.2 7 36 43 71 41 74 0.88 Family of unknown function (DUF5445) W2 PF02020.18 79 NC_008790_00001 - 357 0.037 14.2 0.0 1 1 5.5e-06 0.099 12.8 0.0 38 77 271 331 267 333 0.86 eIF4-gamma/eIF5/eIF2-epsilon Lip_prot_lig_C PF10437.9 85 NC_008790_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 NC_008790_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 NC_008790_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 NC_008790_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 NC_008790_00003 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 NC_008790_00003 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 NC_008790_00004 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 NC_008790_00004 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 NC_008790_00004 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 NC_008790_00004 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 NC_008790_00004 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 NC_008790_00004 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 NC_008790_00004 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 NC_008790_00004 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 NC_008790_00004 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 NC_008790_00005 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 NC_008790_00005 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 NC_008790_00005 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 NC_008790_00005 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 NC_008790_00005 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 NC_008790_00005 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 NC_008790_00006 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 NC_008790_00006 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 NC_008790_00007 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 NC_008790_00007 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 NC_008790_00007 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 NC_008790_00007 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 NC_008790_00007 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 NC_008790_00007 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 NC_008790_00008 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 NC_008790_00009 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 NC_008790_00009 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 NC_008790_00009 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 NC_008790_00009 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 NC_008790_00009 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 NC_008790_00009 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 NC_008790_00009 - 1932 9.9e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 NC_008790_00009 - 1932 9.9e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 NC_008790_00009 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 NC_008790_00009 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 NC_008790_00009 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 NC_008790_00009 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 NC_008790_00010 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 NC_008790_00010 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 NC_008790_00011 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 NC_008790_00011 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 NC_008790_00012 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 NC_008790_00012 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 NC_008790_00012 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 NC_008790_00012 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 NC_008790_00012 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 NC_008790_00012 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 NC_008790_00012 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 NC_008790_00012 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 NC_008790_00012 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 NC_008790_00012 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 NC_008790_00012 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 NC_008790_00013 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 NC_008790_00013 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 NC_008790_00013 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 NC_008790_00013 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 NC_008790_00013 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 NC_008790_00015 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 NC_008790_00015 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 NC_008790_00016 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 NC_008790_00016 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 NC_008790_00016 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 NC_008790_00016 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 NC_008790_00016 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 NC_008790_00017 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 NC_008790_00017 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) UBA_6 PF18039.1 42 NC_008790_00018 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 NC_008790_00018 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 NC_008790_00018 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 NC_008790_00018 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 NC_008790_00019 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 NC_008790_00019 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 NC_008790_00019 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 NC_008790_00021 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 NC_008790_00022 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 NC_008790_00023 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 NC_008790_00023 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 NC_008790_00023 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 NC_008790_00023 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 NC_008790_00023 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 NC_008790_00023 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 NC_008790_00023 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 NC_008790_00023 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 NC_008790_00023 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 NC_008790_00023 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 NC_008790_00023 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 NC_008790_00023 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 NC_008790_00024 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 NC_008790_00024 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 NC_008790_00024 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 NC_008790_00024 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 NC_008790_00024 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 NC_008790_00024 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 NC_008790_00024 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 NC_008790_00024 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 NC_008790_00024 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 NC_008790_00024 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 NC_008790_00025 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 NC_008790_00025 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 NC_008790_00025 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 NC_008790_00027 - 87 3.5e-13 49.6 6.7 1 1 4.5e-17 4e-13 49.4 6.7 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 NC_008790_00027 - 87 0.17 11.8 4.4 1 1 2.6e-05 0.23 11.3 4.4 78 135 37 87 9 87 0.70 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 NC_008790_00028 - 922 4.9e-50 170.5 0.5 1 1 1.9e-53 1.2e-49 169.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 NC_008790_00028 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 NC_008790_00028 - 922 0.048 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 NC_008790_00029 - 188 2e-29 102.0 0.1 1 1 1.9e-33 3.3e-29 101.3 0.1 2 88 24 122 23 122 0.83 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 NC_008790_00030 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 NC_008790_00030 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 NC_008790_00030 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 NC_008790_00030 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 NC_008790_00030 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 NC_008790_00030 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 NC_008790_00030 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 NC_008790_00030 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 NC_008790_00030 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 NC_008790_00030 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 NC_008790_00030 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 NC_008790_00030 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 NC_008790_00030 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 NC_008790_00030 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 NC_008790_00031 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 NC_008790_00032 - 91 0.00046 19.9 6.9 1 2 5.3e-08 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 NC_008790_00032 - 91 0.00046 19.9 6.9 2 2 0.014 1.3e+02 2.5 0.2 31 52 57 78 56 80 0.82 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 NC_008790_00032 - 91 0.0053 17.3 1.0 1 1 6.9e-07 0.0062 17.1 1.0 21 87 9 81 1 85 0.90 FliG N-terminal domain T4SS PF07996.11 197 NC_008790_00033 - 323 7.9e-29 101.5 13.4 1 1 4e-32 1e-28 101.1 13.4 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 NC_008790_00033 - 323 0.0081 16.3 0.6 1 2 0.99 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 NC_008790_00033 - 323 0.0081 16.3 0.6 2 2 1.2e-05 0.03 14.5 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 NC_008790_00033 - 323 0.014 16.1 5.0 1 2 0.046 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 NC_008790_00033 - 323 0.014 16.1 5.0 2 2 5.3e-06 0.014 16.1 5.0 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 NC_008790_00033 - 323 0.043 14.5 0.8 1 2 2.2 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 NC_008790_00033 - 323 0.043 14.5 0.8 2 2 1.7e-05 0.043 14.5 0.8 32 84 209 270 202 296 0.83 von Willebrand factor type A domain KNOX2 PF03791.13 48 NC_008790_00033 - 323 0.07 12.6 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 NC_008790_00033 - 323 0.07 12.6 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain THOC7 PF05615.13 132 NC_008790_00033 - 323 1.2 9.4 11.3 1 2 0.00061 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 NC_008790_00033 - 323 1.2 9.4 11.3 2 2 0.17 4.4e+02 1.1 6.3 16 71 231 294 202 315 0.50 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 NC_008790_00033 - 323 3.5 7.1 7.2 1 2 0.19 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 NC_008790_00033 - 323 3.5 7.1 7.2 2 2 0.00046 1.2 8.6 3.3 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein TrbL PF04610.14 215 NC_008790_00034 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 NC_008790_00034 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 NC_008790_00034 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 NC_008790_00034 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 NC_008790_00034 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 NC_008790_00035 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 NC_008790_00035 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 NC_008790_00036 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 NC_008790_00036 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 NC_008790_00037 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 NC_008790_00037 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 NC_008790_00037 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 NC_008790_00038 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 NC_008790_00038 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 NC_008790_00039 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 NC_008790_00039 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 NC_008790_00039 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 NC_008790_00039 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 NC_008790_00039 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 NC_008790_00039 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 NC_008790_00039 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 NC_008790_00039 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 NC_008790_00039 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 NC_008790_00039 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 NC_008790_00039 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 NC_008790_00039 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 NC_008790_00039 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 NC_008790_00039 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 NC_008790_00039 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 NC_008790_00039 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 NC_008790_00039 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 NC_008790_00039 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 NC_008790_00039 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 NC_008790_00039 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 NC_008790_00039 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 NC_008790_00039 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 NC_008790_00039 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 NC_008790_00039 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 NC_008790_00039 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 NC_008790_00039 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 NC_008790_00039 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 NC_008790_00039 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 NC_008790_00039 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 NC_008790_00039 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 NC_008790_00039 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 NC_008790_00039 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 NC_008790_00040 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 NC_008790_00040 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 NC_008790_00040 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 NC_008790_00040 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 NC_008790_00040 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 NC_008790_00041 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 NC_008790_00041 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 NC_008790_00041 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 NC_008790_00041 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 NC_008790_00041 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 NC_008790_00042 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 NC_008790_00043 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 NC_008790_00043 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 NC_008790_00043 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 NC_008790_00043 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 NC_008790_00043 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 NC_008790_00043 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 NC_008790_00045 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 NC_008790_00045 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 NC_008790_00046 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 NC_008790_00046 - 730 5.6e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 NC_008790_00046 - 730 5.6e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 NC_008790_00046 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 NC_008790_00046 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 NC_008790_00046 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 NC_008790_00046 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 NC_008790_00046 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 NC_008790_00046 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 NC_008790_00046 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 NC_008790_00046 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 NC_008790_00046 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 NC_008790_00046 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 NC_008790_00046 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 NC_008790_00046 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 NC_008790_00046 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 NC_008790_00046 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 NC_008790_00046 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 NC_008790_00046 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 NC_008790_00046 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 NC_008790_00046 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 NC_008790_00046 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 NC_008790_00046 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 NC_008790_00046 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 NC_008790_00046 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 NC_008790_00046 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 NC_008790_00046 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 NC_008790_00046 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 NC_008790_00046 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 NC_008790_00046 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 NC_008790_00046 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 NC_008790_00046 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 NC_008790_00046 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 NC_008790_00046 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 NC_008790_00047 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 NC_008790_00047 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 NC_008790_00049 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 NC_008790_00049 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 NC_008790_00049 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 NC_008790_00049 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 NC_008790_00049 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 NC_008790_00049 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 NC_008790_00049 - 639 0.00029 21.1 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 NC_008790_00049 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 NC_008790_00049 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 NC_008790_00049 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 NC_008790_00049 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 NC_008790_00050 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 NC_008790_00050 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 NC_022355_00001 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 NC_022355_00001 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 NC_022355_00001 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 NC_022355_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 NC_022355_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 NC_022355_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 NC_022355_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain DHHC PF01529.20 134 NC_022355_00004 - 107 4.1 7.5 13.1 1 1 0.0014 13 5.9 13.1 29 78 15 64 9 105 0.49 DHHC palmitoyltransferase DUF4133 PF13571.6 91 NC_022355_00004 - 107 5.6 7.4 7.4 1 1 0.00084 7.5 7.0 6.7 19 65 34 80 30 92 0.77 Domain of unknown function (DUF4133) DHHC PF01529.20 134 NC_022355_00006 - 89 0.033 14.3 6.3 1 1 4.4e-06 0.039 14.0 6.3 53 119 2 67 1 74 0.81 DHHC palmitoyltransferase T4SS_CagC PF16943.5 107 NC_022355_00006 - 89 0.046 13.9 0.2 1 1 6.2e-06 0.056 13.6 0.2 45 99 2 56 1 65 0.72 Cag pathogenicity island, type IV secretory system DUF4044 PF13253.6 33 NC_022355_00008 - 189 0.035 13.6 0.8 1 1 1.4e-05 0.062 12.8 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 NC_022355_00008 - 189 0.065 13.0 0.1 1 1 2e-05 0.091 12.5 0.1 81 149 12 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction DUF2070 PF09843.9 564 NC_022355_00008 - 189 0.072 11.4 1.1 1 1 2.4e-05 0.11 10.8 1.1 127 214 24 108 11 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 NC_022355_00008 - 189 9.1 6.0 13.6 1 2 3.3e-05 0.15 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 NC_022355_00008 - 189 9.1 6.0 13.6 2 2 1.3 5.9e+03 -3.2 0.6 118 133 152 167 144 179 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 NC_022355_00009 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 NC_022355_00009 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) adh_short PF00106.25 195 NC_022355_00010 - 177 0.034 13.6 0.0 1 1 4.8e-06 0.043 13.3 0.0 17 109 60 162 52 170 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 NC_022355_00010 - 177 0.1 12.9 0.0 1 1 2e-05 0.18 12.1 0.0 21 78 75 129 61 138 0.81 Mur ligase family, glutamate ligase domain RHH_7 PF16777.5 74 NC_022355_00011 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 NC_022355_00011 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal SNF2_N PF00176.23 350 NC_022355_00012 - 1931 3.7e-16 58.8 2.9 1 3 1.3e-19 4.5e-16 58.5 0.1 57 245 1017 1272 935 1313 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 NC_022355_00012 - 1931 3.7e-16 58.8 2.9 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 NC_022355_00012 - 1931 3.7e-16 58.8 2.9 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1875 1923 1845 1924 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 NC_022355_00012 - 1931 7.5e-08 32.6 8.9 1 2 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 NC_022355_00012 - 1931 7.5e-08 32.6 8.9 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1798 1909 1724 1931 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 NC_022355_00012 - 1931 9.7e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 NC_022355_00012 - 1931 9.7e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 NC_022355_00012 - 1931 9.5e-06 25.5 2.0 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 NC_022355_00012 - 1931 9.5e-06 25.5 2.0 2 2 0.12 4.2e+02 0.6 0.0 119 150 1882 1915 1827 1930 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 NC_022355_00012 - 1931 2.5e-05 24.7 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 NC_022355_00012 - 1931 2.5e-05 24.7 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 NC_022355_00013 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 NC_022355_00013 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 NC_022355_00013 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 NC_022355_00013 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) Acetyltransf_7 PF13508.7 76 NC_022355_00014 - 166 0.00015 22.1 0.0 1 1 1e-07 0.00031 21.1 0.0 29 75 12 75 2 76 0.60 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 NC_022355_00014 - 166 0.003 17.8 0.0 1 1 2.5e-06 0.0073 16.5 0.0 65 92 14 41 6 74 0.80 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 NC_022355_00014 - 166 0.0052 16.8 0.3 1 1 2.7e-06 0.0082 16.2 0.3 24 67 103 146 86 150 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PHM7_cyt PF14703.6 176 NC_022355_00014 - 166 0.095 12.9 0.2 1 1 5.2e-05 0.15 12.2 0.2 30 85 98 153 86 159 0.81 Cytosolic domain of 10TM putative phosphate transporter Acetyltransf_10 PF13673.7 127 NC_022355_00014 - 166 0.12 12.4 0.0 1 1 0.00011 0.33 10.9 0.0 55 84 13 42 4 84 0.79 Acetyltransferase (GNAT) domain Spc24 PF08286.11 105 NC_022355_00014 - 166 0.39 11.0 3.2 1 2 0.00045 1.3 9.3 0.2 54 89 63 108 31 115 0.67 Spc24 subunit of Ndc80 Spc24 PF08286.11 105 NC_022355_00014 - 166 0.39 11.0 3.2 2 2 0.04 1.2e+02 3.0 0.7 12 43 111 142 101 152 0.69 Spc24 subunit of Ndc80 DUF3913 PF13052.6 57 NC_022355_00015 - 82 0.046 14.0 0.3 1 1 4.2e-06 0.076 13.3 0.2 29 53 35 58 28 62 0.76 Protein of unknown function (DUF3913) Relaxase PF03432.14 242 NC_022355_00016 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 NC_022355_00016 - 462 4.7e-10 39.5 7.4 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 NC_022355_00017 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 NC_022355_00017 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 NC_022355_00017 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 NC_022355_00017 - 183 0.046 13.8 2.1 1 1 1.7e-05 0.063 13.4 1.5 55 131 19 103 9 124 0.70 Stage III sporulation protein AB (spore_III_AB) NLRC4_HD PF17889.1 107 NC_022355_00017 - 183 0.18 12.1 5.5 1 2 0.00027 0.98 9.8 1.8 14 92 6 84 3 98 0.81 NLRC4 helical domain NLRC4_HD PF17889.1 107 NC_022355_00017 - 183 0.18 12.1 5.5 2 2 0.016 56 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 NC_022355_00017 - 183 0.41 10.7 8.1 1 3 0.32 1.1e+03 -0.3 0.1 40 55 12 27 4 54 0.75 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 NC_022355_00017 - 183 0.41 10.7 8.1 2 3 0.011 39 4.4 0.6 11 46 56 91 51 97 0.87 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 NC_022355_00017 - 183 0.41 10.7 8.1 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 NC_022355_00017 - 183 0.42 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 NC_022355_00017 - 183 0.42 10.9 6.2 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 NC_022355_00018 - 99 1.1 9.1 11.3 1 2 4.4e-05 0.26 11.1 5.3 18 48 6 36 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 NC_022355_00018 - 99 1.1 9.1 11.3 2 2 0.074 4.4e+02 0.7 0.1 97 112 60 75 46 85 0.67 CdvA-like coiled-coil domain ESP PF16590.5 91 NC_022355_00018 - 99 1.4 9.3 6.9 1 2 0.025 1.5e+02 2.7 1.5 26 73 3 47 2 53 0.62 Exocrine gland-secreting peptide ESP PF16590.5 91 NC_022355_00018 - 99 1.4 9.3 6.9 2 2 5.2e-05 0.31 11.3 1.2 26 59 43 79 42 99 0.74 Exocrine gland-secreting peptide DUF3671 PF12420.8 115 NC_022355_00018 - 99 1.7 8.7 15.5 1 2 0.024 1.4e+02 2.6 3.6 24 49 17 42 3 46 0.72 Protein of unknown function DUF3671 PF12420.8 115 NC_022355_00018 - 99 1.7 8.7 15.5 2 2 2.6e-05 0.15 12.1 4.1 4 42 59 95 56 98 0.85 Protein of unknown function Ribonuc_2-5A PF06479.12 127 NC_022355_00022 - 152 0.065 13.4 5.2 1 1 2.2e-05 0.2 11.9 5.2 38 91 57 113 1 119 0.63 Ribonuclease 2-5A DUF5311 PF17238.2 194 NC_022355_00022 - 152 0.065 13.1 0.1 1 1 1e-05 0.089 12.7 0.1 88 125 72 111 46 123 0.81 Family of unknown function (DUF5311) Toprim_3 PF13362.6 95 NC_022355_00023 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 NC_022355_00023 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 NC_022355_00023 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 NC_022355_00023 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 NC_022355_00023 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 NC_022355_00024 - 97 0.007 16.3 0.0 1 1 1.7e-06 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) nec1 PF10379.9 184 NC_022355_00024 - 97 0.067 12.7 0.0 1 1 1.1e-05 0.099 12.1 0.0 65 105 56 94 35 96 0.75 Virulence protein nec1 Sdh_cyt PF01127.22 121 NC_022355_00025 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 NC_022355_00025 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 NC_022355_00025 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 NC_022355_00027 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 NC_022355_00028 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 NC_022355_00029 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 NC_022355_00029 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 NC_022355_00029 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 NC_022355_00029 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 NC_022355_00029 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 NC_022355_00029 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 NC_022355_00029 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 NC_022355_00029 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 NC_022355_00029 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 NC_022355_00029 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 NC_022355_00029 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 NC_022355_00029 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 NC_022355_00029 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 NC_022355_00030 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 NC_022355_00030 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 NC_022355_00030 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 NC_022355_00030 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 NC_022355_00030 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 NC_022355_00030 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 NC_022355_00030 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain CRISPR_Cas2 PF09827.9 76 NC_022355_00031 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 NC_022355_00031 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 TrbC PF04956.13 99 NC_022355_00033 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 NC_022355_00033 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 NC_022355_00034 - 922 3.1e-51 174.4 0.4 1 1 7.9e-55 7.1e-51 173.2 0.4 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 NC_022355_00034 - 922 3.6e-21 75.2 0.8 1 1 6.9e-25 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein Phage_pRha PF09669.10 88 NC_022355_00035 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 NC_022355_00035 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 NC_022355_00035 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) PBECR2 PF18810.1 119 NC_022355_00036 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 SSB PF00436.25 104 NC_022355_00037 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 NC_022355_00038 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 NC_022355_00038 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 NC_022355_00038 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 NC_022355_00038 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 NC_022355_00038 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 NC_022355_00038 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 NC_022355_00038 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 NC_022355_00039 - 329 1.7e-28 100.4 13.1 1 1 5.2e-32 2.3e-28 99.9 13.1 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 NC_022355_00039 - 329 0.0035 17.5 0.5 1 2 0.27 1.2e+03 -0.3 0.0 30 54 134 158 120 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 NC_022355_00039 - 329 0.0035 17.5 0.5 2 2 4.7e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 NC_022355_00039 - 329 0.018 15.7 0.8 1 2 1.3 6e+03 -2.1 0.0 55 70 124 139 101 163 0.57 von Willebrand factor type A domain VWA_2 PF13519.6 107 NC_022355_00039 - 329 0.018 15.7 0.8 2 2 8.6e-06 0.039 14.6 0.2 31 84 208 270 197 295 0.83 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 NC_022355_00039 - 329 0.48 11.1 11.5 1 2 0.042 1.9e+02 2.7 0.8 49 135 108 145 95 182 0.47 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 NC_022355_00039 - 329 0.48 11.1 11.5 2 2 8.9e-05 0.4 11.4 4.6 49 117 225 307 205 328 0.69 Apoptosis antagonizing transcription factor TrbL PF04610.14 215 NC_022355_00040 - 331 2.1e-30 106.1 33.3 1 2 4.7e-34 2.1e-30 106.1 33.3 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 NC_022355_00040 - 331 2.1e-30 106.1 33.3 2 2 0.59 2.6e+03 -2.1 0.1 58 88 289 325 260 330 0.47 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 NC_022355_00040 - 331 0.069 13.0 1.0 1 2 0.54 2.4e+03 -1.6 0.1 39 51 70 82 61 114 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 NC_022355_00040 - 331 0.069 13.0 1.0 2 2 5e-05 0.23 11.3 0.1 37 81 243 287 222 298 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 NC_022355_00040 - 331 0.17 11.9 0.0 1 1 6.8e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) AIM3 PF17096.5 88 NC_022355_00040 - 331 0.3 12.1 6.0 1 1 0.00013 0.57 11.1 6.0 9 38 299 328 284 330 0.89 Altered inheritance of mitochondria protein 3 La_HTH_kDCL PF18177.1 90 NC_022355_00041 - 54 0.2 12.0 0.0 1 1 1.2e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain VirB8 PF04335.13 214 NC_022355_00042 - 219 1.6e-52 178.5 0.5 1 1 2e-56 1.8e-52 178.3 0.5 4 214 10 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 NC_022355_00042 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 NC_022355_00043 - 298 9.6e-56 188.8 1.9 1 1 8.4e-60 1.5e-55 188.2 1.9 2 211 32 273 31 273 0.92 Conjugal transfer protein TrbI PF03743.14 187 NC_022355_00044 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.5e+03 -3.4 0.3 136 154 141 166 120 174 0.53 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 NC_022355_00044 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 NC_022355_00044 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease T2SSE PF00437.20 273 NC_022355_00045 - 339 6.9e-55 186.0 0.0 1 1 1.4e-57 8.1e-55 185.8 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 NC_022355_00045 - 339 7.2e-05 23.3 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 NC_022355_00045 - 339 0.00012 21.6 0.0 1 1 3.2e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 NC_022355_00045 - 339 0.00028 20.4 0.0 1 1 9.2e-07 0.00052 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 NC_022355_00045 - 339 0.0014 18.9 0.0 1 1 4.7e-06 0.0026 18.0 0.0 5 56 160 221 155 244 0.72 AAA domain DEAD PF00270.29 176 NC_022355_00045 - 339 0.0014 18.4 0.0 1 1 4.1e-06 0.0023 17.7 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 NC_022355_00045 - 339 0.0026 17.5 0.2 1 1 9.7e-06 0.0054 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 NC_022355_00045 - 339 0.0035 17.3 0.0 1 1 1.3e-05 0.0073 16.3 0.0 10 45 152 186 141 194 0.74 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 NC_022355_00045 - 339 0.0055 15.7 0.0 1 1 1.4e-05 0.0079 15.1 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 NC_022355_00045 - 339 0.0073 16.2 0.0 1 1 2.3e-05 0.013 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 NC_022355_00045 - 339 0.0088 15.4 0.0 1 1 2.6e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 NC_022355_00045 - 339 0.0091 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 305 0.85 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 NC_022355_00045 - 339 0.018 15.1 0.0 1 1 6.4e-05 0.036 14.2 0.0 27 48 164 185 142 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 NC_022355_00045 - 339 0.021 13.8 0.0 1 1 6.2e-05 0.035 13.0 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 NC_022355_00045 - 339 0.023 14.7 0.0 1 1 9.6e-05 0.054 13.5 0.0 5 50 147 186 135 248 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 NC_022355_00045 - 339 0.024 14.4 0.0 1 1 9.2e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 NC_022355_00045 - 339 0.026 14.2 0.0 1 1 9.8e-05 0.055 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 NC_022355_00045 - 339 0.031 13.8 0.0 1 1 0.00011 0.061 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 NC_022355_00045 - 339 0.035 14.2 0.1 1 1 0.00019 0.11 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 NC_022355_00045 - 339 0.04 13.7 0.0 1 1 0.00011 0.064 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 NC_022355_00045 - 339 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 NC_022355_00045 - 339 0.046 13.0 0.0 1 1 0.00015 0.082 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin PRK PF00485.18 197 NC_022355_00045 - 339 0.058 13.1 0.0 1 1 0.0002 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 NC_022355_00045 - 339 0.065 11.9 0.0 1 1 0.00016 0.092 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 NC_022355_00045 - 339 0.075 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 NC_022355_00045 - 339 0.089 12.7 0.0 1 1 0.00036 0.2 11.5 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 NC_022355_00045 - 339 0.089 12.7 0.4 1 1 0.00039 0.22 11.5 0.3 71 102 149 179 129 220 0.81 Microtubule binding NTPase_1 PF03266.15 168 NC_022355_00045 - 339 0.11 12.4 0.1 1 1 0.00042 0.23 11.3 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 NC_022355_00045 - 339 0.12 13.0 0.0 1 2 8.1 4.6e+03 -1.9 0.0 25 60 14 49 4 61 0.76 AAA domain AAA_18 PF13238.6 130 NC_022355_00045 - 339 0.12 13.0 0.0 2 2 0.0007 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 NC_022355_00045 - 339 0.15 11.7 0.0 1 1 0.00043 0.24 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 NC_022355_00045 - 339 0.15 11.7 0.0 1 1 0.00044 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 NC_022355_00045 - 339 0.38 11.2 4.1 1 2 2.7 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 NC_022355_00045 - 339 0.38 11.2 4.1 2 2 0.00068 0.38 11.2 1.3 22 37 163 178 160 184 0.87 AAA domain Carbam_trans_N PF02543.15 338 NC_022355_00046 - 267 0.053 13.2 0.0 1 1 4.1e-06 0.073 12.7 0.0 195 313 117 236 74 243 0.86 Carbamoyltransferase N-terminus T4SS-DNA_transf PF02534.14 469 NC_022355_00047 - 603 8.3e-104 348.0 0.1 1 1 3.2e-107 1.1e-103 347.5 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 NC_022355_00047 - 603 3.5e-24 85.2 0.0 1 1 1.9e-27 6.8e-24 84.3 0.0 2 125 406 528 405 529 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 NC_022355_00047 - 603 3.2e-15 55.9 0.0 1 2 2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 NC_022355_00047 - 603 3.2e-15 55.9 0.0 2 2 1.6e-13 5.8e-10 38.6 0.0 187 369 347 531 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 NC_022355_00047 - 603 0.17 11.9 0.1 1 1 8.3e-05 0.3 11.2 0.1 37 93 9 87 3 100 0.78 Putative Actinobacterial Holin-X, holin superfamily III ECF_trnsprt PF12822.7 172 NC_022355_00047 - 603 1.2 9.2 8.3 1 1 0.00056 2 8.5 8.3 101 168 4 79 1 81 0.85 ECF transporter, substrate-specific component Cag12 PF13117.6 97 NC_022355_00048 - 143 1.4e-16 60.7 0.3 1 1 2.1e-20 1.9e-16 60.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 NC_022355_00048 - 143 0.06 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 NC_022355_00049 - 252 4.1e-38 130.8 2.0 1 1 2.9e-42 5.3e-38 130.4 2.0 1 154 25 190 25 192 0.88 TrbM PRELI PF04707.14 157 NC_022355_00050 - 265 0.044 13.6 0.3 1 2 0.26 2.4e+03 -1.8 0.1 107 133 23 45 5 72 0.49 PRELI-like family PRELI PF04707.14 157 NC_022355_00050 - 265 0.044 13.6 0.3 2 2 4.9e-06 0.044 13.6 0.3 96 155 83 147 78 149 0.87 PRELI-like family TACC_C PF05010.14 201 NC_022355_00050 - 265 0.92 9.3 9.3 1 2 0.00027 2.4 7.9 8.2 14 124 2 111 1 135 0.79 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 NC_022355_00050 - 265 0.92 9.3 9.3 2 2 0.035 3.2e+02 1.0 1.1 8 45 100 139 94 148 0.70 Transforming acidic coiled-coil-containing protein (TACC), C-terminal CdhD PF03599.16 386 NC_022355_00051 - 246 0.002 16.9 0.0 1 1 5.3e-07 0.0031 16.3 0.0 269 358 39 127 30 136 0.86 CO dehydrogenase/acetyl-CoA synthase delta subunit Pox_RNA_pol PF03293.14 160 NC_022355_00051 - 246 0.012 15.3 0.9 1 1 4.5e-06 0.027 14.2 0.9 35 158 20 138 7 140 0.83 Poxvirus DNA-directed RNA polymerase, 18 kD subunit Redoxin PF08534.10 147 NC_022355_00051 - 246 0.059 13.1 0.5 1 2 0.079 4.7e+02 0.4 0.0 117 146 49 76 31 77 0.79 Redoxin Redoxin PF08534.10 147 NC_022355_00051 - 246 0.059 13.1 0.5 2 2 7.9e-05 0.47 10.2 0.1 49 76 184 213 178 230 0.79 Redoxin DUF1461 PF07314.11 189 NC_022355_00052 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) Topoisom_bac PF01131.20 413 NC_022355_00053 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 NC_022355_00053 - 730 6.3e-12 45.6 2.6 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 NC_022355_00053 - 730 6.3e-12 45.6 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 NC_022355_00053 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 NC_022355_00053 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 NC_022355_00053 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 NC_022355_00053 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 NC_022355_00053 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 NC_022355_00053 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 NC_022355_00053 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 NC_022355_00053 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 NC_022355_00053 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 NC_022355_00053 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 NC_022355_00053 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 NC_022355_00053 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 NC_022355_00053 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 NC_022355_00053 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 NC_022355_00053 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 NC_022355_00053 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 NC_022355_00053 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 NC_022355_00053 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 NC_022355_00053 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 NC_022355_00053 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 NC_022355_00053 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 NC_022355_00053 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 NC_022355_00053 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 NC_022355_00053 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 NC_022355_00053 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 NC_022355_00053 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 NC_022355_00053 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 NC_022355_00053 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 NC_022355_00053 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 NC_022355_00053 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 NC_022355_00053 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 NC_022355_00054 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 NC_022355_00054 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain APH PF01636.23 240 NC_022355_00056 - 306 5.8e-22 78.8 0.0 1 1 2.1e-25 7.5e-22 78.4 0.0 13 230 39 256 27 265 0.75 Phosphotransferase enzyme family RIO1 PF01163.22 188 NC_022355_00056 - 306 2.1e-06 27.5 0.1 1 2 0.00064 2.3 7.8 0.0 47 111 52 117 46 131 0.76 RIO1 family RIO1 PF01163.22 188 NC_022355_00056 - 306 2.1e-06 27.5 0.1 2 2 5.8e-07 0.0021 17.7 0.1 97 154 165 223 149 253 0.81 RIO1 family DUF1679 PF07914.11 414 NC_022355_00056 - 306 0.00034 19.6 0.1 1 2 1 3.7e+03 -3.6 0.0 113 142 60 89 55 92 0.78 Protein of unknown function (DUF1679) DUF1679 PF07914.11 414 NC_022355_00056 - 306 0.00034 19.6 0.1 2 2 1.6e-07 0.00056 18.9 0.0 213 318 134 238 102 253 0.70 Protein of unknown function (DUF1679) Choline_kinase PF01633.20 213 NC_022355_00056 - 306 0.00076 19.1 0.2 1 2 5.9e-07 0.0021 17.7 0.1 21 171 61 218 46 219 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 NC_022355_00056 - 306 0.00076 19.1 0.2 2 2 0.51 1.8e+03 -1.7 0.0 6 25 249 268 247 271 0.89 Choline/ethanolamine kinase EcKinase PF02958.20 294 NC_022355_00056 - 306 0.0095 15.3 0.1 1 1 3.7e-06 0.013 14.8 0.1 189 270 162 243 121 262 0.65 Ecdysteroid kinase GTP_EFTU PF00009.27 194 NC_022355_00057 - 639 5.6e-59 198.9 0.3 1 1 3.9e-62 7.8e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 NC_022355_00057 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 NC_022355_00057 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 NC_022355_00057 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 NC_022355_00057 - 639 2.1e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 NC_022355_00057 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 NC_022355_00057 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 NC_022355_00057 - 639 0.0091 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 NC_022355_00057 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 NC_022355_00057 - 639 0.05 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family CPSF_A PF03178.15 322 NC_022355_00059 - 95 0.034 13.4 0.0 1 1 9.6e-06 0.034 13.4 0.0 248 286 57 94 23 95 0.80 CPSF A subunit region ATPase PF06745.13 231 NC_022355_00059 - 95 0.048 13.0 0.2 1 1 1.4e-05 0.049 13.0 0.2 73 152 7 87 1 94 0.74 KaiC TipAS PF07739.13 117 NC_022355_00059 - 95 0.061 13.9 1.5 1 1 0.00033 1.2 9.7 1.9 27 96 5 80 1 92 0.80 TipAS antibiotic-recognition domain 3HCDH PF00725.22 97 NC_022355_00059 - 95 0.091 13.4 0.2 1 1 3.8e-05 0.14 12.8 0.2 7 65 36 93 33 95 0.91 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DUF4942 PF13708.6 199 NC_022355_00059 - 95 0.15 12.0 0.0 1 1 7.1e-05 0.26 11.3 0.0 22 74 36 87 33 93 0.88 Domain of unknown function (DUF4942) PNP_UDP_1 PF01048.20 234 NC_022355_00060 - 256 7.6e-29 100.6 0.0 1 1 4.8e-33 8.7e-29 100.4 0.0 3 219 34 237 32 255 0.86 Phosphorylase superfamily DUF4111 PF13427.6 103 NC_022355_00061 - 218 3.1e-17 62.6 0.0 1 3 0.56 2.5e+03 -1.3 0.0 60 80 3 23 2 25 0.81 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 NC_022355_00061 - 218 3.1e-17 62.6 0.0 2 3 1.5 6.8e+03 -2.7 0.0 8 22 52 66 50 72 0.73 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 NC_022355_00061 - 218 3.1e-17 62.6 0.0 3 3 3.9e-20 1.8e-16 60.2 0.0 1 67 148 214 148 217 0.97 Domain of unknown function (DUF4111) Polbeta PF18765.1 93 NC_022355_00061 - 218 8.7e-10 38.6 0.0 1 2 8.5e-13 3.8e-09 36.5 0.0 8 74 22 92 11 97 0.77 Polymerase beta, Nucleotidyltransferase Polbeta PF18765.1 93 NC_022355_00061 - 218 8.7e-10 38.6 0.0 2 2 0.33 1.5e+03 -0.6 0.0 17 42 103 134 98 153 0.72 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 95 NC_022355_00061 - 218 2.4e-06 27.8 0.0 1 1 1e-09 4.5e-06 26.9 0.0 14 76 25 89 11 107 0.76 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 199 NC_022355_00061 - 218 0.00015 21.7 0.0 1 1 4.6e-08 0.00021 21.3 0.0 88 138 21 71 2 84 0.86 Adenylate cyclase NT domain DUF4111 PF13427.6 103 NC_022355_00062 - 55 0.0023 18.0 0.0 1 1 1.5e-07 0.0027 17.9 0.0 69 103 13 47 7 47 0.95 Domain of unknown function (DUF4111) AAA_18 PF13238.6 130 NC_022355_00063 - 181 5.7e-14 52.8 0.0 1 1 1.6e-16 7.6e-14 52.4 0.0 1 124 7 135 7 141 0.86 AAA domain CPT PF07931.12 174 NC_022355_00063 - 181 3e-09 37.0 0.0 1 1 1.2e-11 5.8e-09 36.0 0.0 1 172 4 172 4 174 0.81 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 NC_022355_00063 - 181 6.4e-09 36.1 0.0 1 1 1.9e-11 9.4e-09 35.6 0.0 2 136 7 144 6 146 0.81 AAA domain Zeta_toxin PF06414.12 199 NC_022355_00063 - 181 1.5e-08 34.2 0.0 1 1 7.5e-11 3.6e-08 32.9 0.0 18 162 6 140 2 174 0.78 Zeta toxin AAA PF00004.29 132 NC_022355_00063 - 181 8.7e-06 26.2 0.2 1 2 1.7e-07 8.1e-05 23.1 0.0 2 34 8 41 7 83 0.78 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 NC_022355_00063 - 181 8.7e-06 26.2 0.2 2 2 0.71 3.5e+02 1.6 0.0 104 131 108 135 56 136 0.84 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 163 NC_022355_00063 - 181 0.0001 22.6 0.1 1 2 8.3e-07 0.0004 20.7 0.0 2 62 7 71 6 85 0.62 AAA domain AAA_28 PF13521.6 163 NC_022355_00063 - 181 0.0001 22.6 0.1 2 2 2.6 1.2e+03 -0.4 0.1 137 137 133 133 91 177 0.52 AAA domain AAA_17 PF13207.6 136 NC_022355_00063 - 181 0.0002 21.8 0.0 1 1 7.1e-07 0.00035 21.0 0.0 1 128 10 131 10 139 0.78 AAA domain AAA_22 PF13401.6 137 NC_022355_00063 - 181 0.00034 20.9 0.0 1 2 2e-06 0.00099 19.4 0.0 4 33 3 32 1 84 0.83 AAA domain AAA_22 PF13401.6 137 NC_022355_00063 - 181 0.00034 20.9 0.0 2 2 3.7 1.8e+03 -0.9 0.0 62 83 121 141 96 178 0.64 AAA domain AAA_14 PF13173.6 131 NC_022355_00063 - 181 0.00043 20.3 0.0 1 1 1.4e-06 0.00066 19.7 0.0 2 127 4 141 3 145 0.72 AAA domain RuvB_N PF05496.12 159 NC_022355_00063 - 181 0.0016 18.2 0.1 1 2 1.2e-05 0.0057 16.4 0.0 36 60 7 31 3 49 0.85 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 NC_022355_00063 - 181 0.0016 18.2 0.1 2 2 3.1 1.5e+03 -1.2 0.0 96 114 111 129 104 167 0.72 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 146 NC_022355_00063 - 181 0.0024 18.2 0.0 1 1 8.6e-06 0.0042 17.4 0.0 9 35 3 29 1 77 0.87 AAA domain ABC_tran PF00005.27 137 NC_022355_00063 - 181 0.0031 18.0 0.1 1 1 8.5e-06 0.0041 17.6 0.1 9 43 2 35 1 133 0.85 ABC transporter AAA_16 PF13191.6 170 NC_022355_00063 - 181 0.0045 17.4 0.0 1 1 1.9e-05 0.0092 16.4 0.0 22 62 2 43 1 76 0.75 AAA ATPase domain KTI12 PF08433.10 272 NC_022355_00063 - 181 0.0048 16.4 0.0 1 2 2e-05 0.0095 15.4 0.0 3 42 6 44 5 87 0.74 Chromatin associated protein KTI12 KTI12 PF08433.10 272 NC_022355_00063 - 181 0.0048 16.4 0.0 2 2 4.5 2.2e+03 -2.2 0.0 263 263 137 137 104 174 0.57 Chromatin associated protein KTI12 DUF2075 PF09848.9 363 NC_022355_00063 - 181 0.005 16.1 0.2 1 1 1.6e-05 0.0077 15.5 0.1 2 29 5 32 4 68 0.84 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.20 158 NC_022355_00063 - 181 0.0076 16.2 0.0 1 2 0.00023 0.11 12.3 0.0 1 79 3 84 3 111 0.64 Adenylylsulphate kinase APS_kinase PF01583.20 158 NC_022355_00063 - 181 0.0076 16.2 0.0 2 2 0.37 1.8e+02 1.9 0.0 44 74 118 148 98 155 0.85 Adenylylsulphate kinase AAA_30 PF13604.6 192 NC_022355_00063 - 181 0.0092 15.7 0.1 1 1 3.2e-05 0.016 15.0 0.1 17 40 3 26 1 39 0.82 AAA domain AAA_24 PF13479.6 197 NC_022355_00063 - 181 0.0096 15.7 0.3 1 1 2e-05 0.0097 15.6 0.3 3 23 5 30 3 171 0.85 AAA domain Ploopntkinase1 PF18748.1 196 NC_022355_00063 - 181 0.0099 15.4 0.0 1 2 0.087 42 3.6 0.0 16 41 3 28 1 41 0.82 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 NC_022355_00063 - 181 0.0099 15.4 0.0 2 2 0.00091 0.44 10.0 0.0 93 164 72 143 54 154 0.81 P-loop Nucleotide Kinase1 T2SSE PF00437.20 273 NC_022355_00063 - 181 0.011 14.8 0.0 1 1 3.4e-05 0.016 14.3 0.0 130 158 5 33 1 75 0.82 Type II/IV secretion system protein ATPase PF06745.13 231 NC_022355_00063 - 181 0.011 15.1 1.2 1 2 3.6e-05 0.017 14.5 0.1 18 37 3 22 1 35 0.87 KaiC ATPase PF06745.13 231 NC_022355_00063 - 181 0.011 15.1 1.2 2 2 2.3 1.1e+03 -1.3 0.1 98 129 123 159 100 175 0.49 KaiC Rad17 PF03215.15 186 NC_022355_00063 - 181 0.012 15.5 0.0 1 2 8.1e-05 0.039 13.9 0.0 45 71 4 30 1 40 0.88 Rad17 P-loop domain Rad17 PF03215.15 186 NC_022355_00063 - 181 0.012 15.5 0.0 2 2 3.2 1.5e+03 -1.1 0.0 113 146 110 145 96 169 0.62 Rad17 P-loop domain SRP54 PF00448.22 196 NC_022355_00063 - 181 0.016 14.8 0.1 1 1 6.3e-05 0.031 13.9 0.1 3 40 6 42 4 49 0.84 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 168 NC_022355_00063 - 181 0.021 14.7 1.0 1 2 0.0001 0.049 13.5 0.3 2 22 7 27 6 35 0.85 NTPase NTPase_1 PF03266.15 168 NC_022355_00063 - 181 0.021 14.7 1.0 2 2 2.1 1e+03 -0.5 0.0 115 136 97 118 58 172 0.59 NTPase dNK PF01712.19 204 NC_022355_00063 - 181 0.034 14.0 0.2 1 2 0.0019 0.94 9.3 0.0 1 52 7 75 7 77 0.66 Deoxynucleoside kinase dNK PF01712.19 204 NC_022355_00063 - 181 0.034 14.0 0.2 2 2 0.19 94 2.8 0.2 118 162 102 143 92 175 0.70 Deoxynucleoside kinase Sigma54_activat PF00158.26 168 NC_022355_00063 - 181 0.035 13.8 0.0 1 1 0.00014 0.066 12.9 0.0 25 68 7 57 1 89 0.76 Sigma-54 interaction domain TIP49 PF06068.13 351 NC_022355_00063 - 181 0.035 13.3 0.2 1 2 0.00023 0.11 11.6 0.0 50 77 4 31 1 46 0.84 TIP49 P-loop domain TIP49 PF06068.13 351 NC_022355_00063 - 181 0.035 13.3 0.2 2 2 1.4 7e+02 -0.8 0.1 148 178 126 156 105 172 0.75 TIP49 P-loop domain ATPase_2 PF01637.18 233 NC_022355_00063 - 181 0.039 13.8 0.3 1 2 0.0045 2.2 8.2 0.0 19 49 3 32 1 50 0.75 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 NC_022355_00063 - 181 0.039 13.8 0.3 2 2 0.085 41 4.0 0.1 48 97 102 150 92 179 0.53 ATPase domain predominantly from Archaea DnaB_C PF03796.15 255 NC_022355_00063 - 181 0.06 12.7 0.4 1 2 0.00026 0.13 11.6 0.0 17 47 2 32 1 42 0.83 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 NC_022355_00063 - 181 0.06 12.7 0.4 2 2 2.6 1.3e+03 -1.5 0.1 84 91 136 143 98 179 0.39 DnaB-like helicase C terminal domain MKT1_N PF12247.8 90 NC_022355_00063 - 181 0.069 13.5 0.0 1 1 0.00057 0.28 11.6 0.0 14 51 39 74 36 147 0.88 Temperature dependent protein affecting M2 dsRNA replication AAA_11 PF13086.6 261 NC_022355_00063 - 181 0.073 12.8 1.5 1 1 0.00025 0.12 12.1 1.5 16 42 3 29 1 179 0.85 AAA domain PhoH PF02562.16 205 NC_022355_00063 - 181 0.076 12.5 0.1 1 1 0.0003 0.14 11.5 0.1 18 49 3 34 1 36 0.84 PhoH-like protein RNA_helicase PF00910.22 107 NC_022355_00063 - 181 0.089 13.2 0.0 1 1 0.00032 0.16 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase NACHT PF05729.12 166 NC_022355_00063 - 181 0.1 12.5 0.0 1 1 0.00036 0.17 11.8 0.0 1 40 5 45 5 73 0.78 NACHT domain ATP-synt_ab PF00006.25 213 NC_022355_00063 - 181 0.14 11.8 0.0 1 1 0.00028 0.14 11.8 0.0 13 45 3 34 1 178 0.82 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 181 NC_022355_00063 - 181 0.18 11.3 0.7 1 2 0.00058 0.28 10.7 0.1 31 63 2 34 1 46 0.80 P-loop containing dynein motor region AAA_7 PF12775.7 181 NC_022355_00063 - 181 0.18 11.3 0.7 2 2 8.9 4.3e+03 -3.0 0.0 65 82 156 173 132 176 0.64 P-loop containing dynein motor region Cytidylate_kin2 PF13189.6 179 NC_022355_00063 - 181 0.2 11.8 1.5 1 2 0.038 19 5.4 0.1 1 23 6 28 6 36 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 NC_022355_00063 - 181 0.2 11.8 1.5 2 2 0.026 12 5.9 0.1 108 147 99 138 28 143 0.73 Cytidylate kinase-like family APH PF01636.23 240 NC_022355_00064 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 NC_022355_00064 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 NC_022355_00064 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 NC_022355_00064 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 NC_022355_00064 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 NC_022355_00064 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 NC_022355_00065 - 139 2.2e-51 174.9 0.1 1 1 1.4e-55 2.4e-51 174.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase Adenyl_transf PF04439.12 279 NC_022355_00066 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 NC_022355_00067 - 180 3.8e-20 72.3 0.1 1 1 2.3e-23 5.3e-20 71.8 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 NC_022355_00067 - 180 1.2e-13 51.2 0.1 1 1 9.1e-17 2e-13 50.5 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 NC_022355_00067 - 180 2.7e-12 46.7 0.0 1 1 1.6e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 NC_022355_00067 - 180 1.1e-09 38.6 1.1 1 1 6e-13 1.3e-09 38.3 1.1 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 NC_022355_00067 - 180 0.0011 19.7 0.0 1 1 6.1e-07 0.0014 19.4 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 NC_022355_00067 - 180 0.0011 19.0 0.0 1 1 1.2e-06 0.0027 17.8 0.0 6 58 79 130 73 132 0.85 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 NC_022355_00067 - 180 0.015 15.4 0.0 1 1 2.6e-05 0.059 13.5 0.0 21 126 50 154 43 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 NC_022355_00067 - 180 0.038 14.0 0.0 1 1 2.9e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein APH PF01636.23 240 NC_022355_00068 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 NC_022355_00068 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 NC_022355_00068 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 NC_022355_00068 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family zf-HC2 PF13490.6 35 NC_022355_00069 - 221 3.2e-06 27.3 2.7 1 1 1.2e-09 6.9e-06 26.2 2.7 4 35 11 42 9 42 0.97 Putative zinc-finger Glyco_hydro_100 PF12899.7 435 NC_022355_00069 - 221 0.11 11.1 0.0 1 2 5.6e-05 0.34 9.5 0.0 29 75 3 50 1 72 0.86 Alkaline and neutral invertase Glyco_hydro_100 PF12899.7 435 NC_022355_00069 - 221 0.11 11.1 0.0 2 2 0.094 5.6e+02 -1.1 0.0 265 319 107 163 99 169 0.82 Alkaline and neutral invertase TetR_C_11 PF16859.5 113 NC_022355_00069 - 221 0.15 12.4 0.7 1 1 3.5e-05 0.21 11.9 0.7 12 111 12 110 11 112 0.88 Tetracyclin repressor-like, C-terminal domain Sigma70_r4_2 PF08281.12 54 NC_022355_00070 - 150 2.5e-07 30.3 0.0 1 1 6.3e-11 3.8e-07 29.7 0.0 1 54 87 140 87 140 0.97 Sigma-70, region 4 Sigma70_r4 PF04545.16 50 NC_022355_00070 - 150 3.8e-06 26.3 0.0 1 1 1.1e-09 6.3e-06 25.6 0.0 1 48 93 140 93 142 0.93 Sigma-70, region 4 HTH_38 PF13936.6 44 NC_022355_00070 - 150 0.021 14.6 0.0 1 1 6.9e-06 0.041 13.6 0.0 3 33 95 125 93 126 0.92 Helix-turn-helix domain Reticulon PF02453.17 157 pAAFJ01000010_00004 - 71 0.011 15.7 3.4 1 1 6.2e-07 0.011 15.7 3.4 101 143 3 45 1 63 0.95 Reticulon TK PF00265.18 177 pAAFJ01000010_00005 - 167 7e-20 71.6 1.2 1 1 2.7e-23 1.6e-19 70.5 1.2 3 177 2 162 1 162 0.81 Thymidine kinase AAA_14 PF13173.6 131 pAAFJ01000010_00005 - 167 0.003 17.6 0.3 1 1 6.7e-07 0.004 17.2 0.3 5 99 3 103 1 117 0.58 AAA domain Terminase_6 PF03237.15 215 pAAFJ01000010_00005 - 167 0.0088 15.7 0.4 1 1 5.1e-06 0.03 14.0 0.4 2 57 5 64 4 120 0.78 Terminase-like family FcoT PF10862.8 156 pAAFJ01000010_00006 - 86 0.031 13.9 0.1 1 1 5.7e-06 0.034 13.7 0.1 69 125 26 83 13 86 0.83 FcoT-like thioesterase domain ECH_2 PF16113.5 334 pAAFJ01000010_00006 - 86 0.044 13.3 0.5 1 1 7.5e-06 0.045 13.3 0.5 166 240 5 80 1 86 0.77 Enoyl-CoA hydratase/isomerase EF-hand_7 PF13499.6 71 pAAFJ01000010_00006 - 86 0.068 13.6 0.2 1 1 0.00044 2.6 8.5 0.2 42 70 28 75 6 76 0.55 EF-hand domain pair DUF3973 PF13119.6 40 pAAFJ01000010_00007 - 73 0.088 12.9 2.7 1 2 0.018 3.2e+02 1.5 0.0 12 23 15 26 11 38 0.70 Domain of unknown function (DUF3973) DUF3973 PF13119.6 40 pAAFJ01000010_00007 - 73 0.088 12.9 2.7 2 2 1.9e-05 0.35 11.0 1.3 1 28 41 66 41 73 0.86 Domain of unknown function (DUF3973) Toprim_2 PF13155.6 90 pAAFJ01000010_00010 - 341 2.2e-11 44.0 0.0 1 1 9.5e-15 4.3e-11 43.1 0.0 1 90 238 328 238 328 0.90 Toprim-like Toprim_3 PF13362.6 95 pAAFJ01000010_00010 - 341 4.2e-05 23.8 0.0 1 1 1.9e-08 8.4e-05 22.9 0.0 2 90 237 329 236 332 0.76 Toprim domain zf-CHC2 PF01807.20 98 pAAFJ01000010_00010 - 341 0.0061 16.4 0.1 1 2 8.3e-06 0.037 13.8 0.1 48 92 3 46 1 51 0.84 CHC2 zinc finger zf-CHC2 PF01807.20 98 pAAFJ01000010_00010 - 341 0.0061 16.4 0.1 2 2 0.37 1.6e+03 -1.1 0.0 47 64 276 293 271 300 0.80 CHC2 zinc finger DUF3854 PF12965.7 130 pAAFJ01000010_00010 - 341 0.094 12.7 0.0 1 1 6.4e-05 0.29 11.1 0.0 68 126 279 331 267 334 0.85 Domain of unknown function (DUF3854) CSN8_PSD8_EIF3K PF10075.9 144 pAAFJ01000010_00011 - 135 0.31 11.0 4.2 1 2 0.018 3.3e+02 1.2 0.2 54 81 8 35 2 47 0.56 CSN8/PSMD8/EIF3K family CSN8_PSD8_EIF3K PF10075.9 144 pAAFJ01000010_00011 - 135 0.31 11.0 4.2 2 2 1.6e-05 0.29 11.1 0.8 41 102 73 127 35 130 0.86 CSN8/PSMD8/EIF3K family Peptidase_C39 PF03412.15 133 pAAFJ01000010_00015 - 197 2.5e-17 62.9 0.0 1 1 3.7e-21 3.3e-17 62.5 0.0 2 124 33 162 32 176 0.81 Peptidase C39 family Peptidase_C70 PF12385.8 145 pAAFJ01000010_00015 - 197 3e-05 24.0 0.0 1 1 4.7e-09 4.2e-05 23.6 0.0 11 131 37 147 20 158 0.79 Papain-like cysteine protease AvrRpt2 Phage_integrase PF00589.22 172 pAAFJ01000010_00017 - 314 2.8e-20 72.8 2.1 1 1 1.5e-23 4.4e-20 72.2 2.1 2 170 131 302 130 304 0.85 Phage integrase family Phage_int_SAM_1 PF02899.17 84 pAAFJ01000010_00017 - 314 5.5e-05 23.4 2.7 1 3 2.7e-05 0.081 13.2 0.1 3 60 18 75 16 79 0.87 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pAAFJ01000010_00017 - 314 5.5e-05 23.4 2.7 2 3 0.00047 1.4 9.3 0.0 10 37 78 104 76 110 0.88 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pAAFJ01000010_00017 - 314 5.5e-05 23.4 2.7 3 3 2.4 7.2e+03 -2.6 0.1 37 59 125 147 118 153 0.61 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 pAAFJ01000010_00017 - 314 0.00022 21.5 8.0 1 2 7.5e-08 0.00022 21.5 8.0 7 80 17 98 11 105 0.84 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pAAFJ01000010_00017 - 314 0.00022 21.5 8.0 2 2 0.47 1.4e+03 -0.3 0.3 4 17 218 231 210 293 0.72 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 85 pAAFJ01000010_00017 - 314 0.0026 18.2 5.5 1 2 8.6e-07 0.0026 18.2 5.5 2 79 16 102 15 108 0.89 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pAAFJ01000010_00017 - 314 0.0026 18.2 5.5 2 2 2.1 6.4e+03 -2.3 0.1 20 44 188 211 172 233 0.57 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.7 149 pAAFJ01000010_00017 - 314 0.0035 17.5 0.4 1 1 2.3e-06 0.0067 16.5 0.4 30 148 156 271 120 272 0.76 Integrase Phage_int_SAM_6 PF18644.1 132 pAAFJ01000010_00017 - 314 3.7 7.6 16.4 1 4 0.00026 0.77 9.8 0.9 3 46 5 49 3 63 0.75 Phage integrase SAM-like domain Phage_int_SAM_6 PF18644.1 132 pAAFJ01000010_00017 - 314 3.7 7.6 16.4 2 4 0.00083 2.5 8.1 2.6 88 132 54 105 33 105 0.66 Phage integrase SAM-like domain Phage_int_SAM_6 PF18644.1 132 pAAFJ01000010_00017 - 314 3.7 7.6 16.4 3 4 1.5 4.5e+03 -2.4 0.0 37 46 138 147 113 196 0.62 Phage integrase SAM-like domain Phage_int_SAM_6 PF18644.1 132 pAAFJ01000010_00017 - 314 3.7 7.6 16.4 4 4 1.2 3.5e+03 -2.1 0.3 29 72 255 299 246 308 0.60 Phage integrase SAM-like domain HMG-CoA_red PF00368.18 367 pAAFJ01000010_00018 - 74 0.083 11.9 0.0 1 1 5.8e-06 0.1 11.6 0.0 166 202 29 65 27 73 0.91 Hydroxymethylglutaryl-coenzyme A reductase WGR PF05406.15 80 pAAFJ01000010_00019 - 75 0.00012 22.0 0.3 1 1 4e-08 0.00014 21.8 0.3 6 73 7 74 2 75 0.88 WGR domain Latarcin PF10279.9 81 pAAFJ01000010_00019 - 75 0.01 16.2 0.1 1 1 4.2e-06 0.015 15.7 0.1 48 70 47 69 45 74 0.84 Latarcin precursor Tantalus PF15386.6 59 pAAFJ01000010_00019 - 75 0.047 13.8 0.1 1 2 1.3e-05 0.047 13.8 0.1 15 47 28 60 24 64 0.88 Drosophila Tantalus-like Tantalus PF15386.6 59 pAAFJ01000010_00019 - 75 0.047 13.8 0.1 2 2 0.62 2.2e+03 -1.2 0.7 6 14 64 72 61 73 0.74 Drosophila Tantalus-like PPR_2 PF13041.6 50 pAAFJ01000010_00019 - 75 0.14 12.4 0.9 1 1 6.5e-05 0.23 11.7 0.9 18 35 54 71 52 72 0.92 PPR repeat family PPR PF01535.20 31 pAAFJ01000010_00019 - 75 0.23 11.8 1.6 1 2 2.6 9.3e+03 -2.7 0.0 22 27 26 31 21 35 0.71 PPR repeat PPR PF01535.20 31 pAAFJ01000010_00019 - 75 0.23 11.8 1.6 2 2 8.7e-05 0.31 11.4 0.7 15 31 54 70 54 70 0.90 PPR repeat HD PF01966.22 122 pAAFJ01000010_00021 - 539 1.8e-10 41.1 0.9 1 1 4e-14 3.6e-10 40.1 0.9 3 99 227 335 225 395 0.81 HD domain HD_6 PF18019.1 196 pAAFJ01000010_00021 - 539 0.029 14.5 0.1 1 1 6.9e-06 0.062 13.4 0.1 45 135 241 324 218 370 0.67 HD domain TrwB_AAD_bind PF10412.9 386 pAAFJ01000010_00022 - 459 4e-17 62.2 0.0 1 1 5e-20 6.4e-17 61.5 0.0 10 323 44 387 38 422 0.78 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 469 pAAFJ01000010_00022 - 459 2e-15 56.6 0.5 1 1 2.1e-18 2.7e-15 56.2 0.5 40 384 33 387 7 405 0.81 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pAAFJ01000010_00022 - 459 1.3e-10 41.3 0.1 1 1 2.1e-13 2.7e-10 40.3 0.1 3 83 311 390 309 421 0.90 TraM recognition site of TraD and TraG DUF87 PF01935.17 227 pAAFJ01000010_00022 - 459 1.2e-05 25.6 0.5 1 2 2.3e-08 2.9e-05 24.3 0.1 12 152 39 205 27 288 0.61 Helicase HerA, central domain DUF87 PF01935.17 227 pAAFJ01000010_00022 - 459 1.2e-05 25.6 0.5 2 2 1.7 2.1e+03 -1.5 0.0 184 200 361 377 303 439 0.57 Helicase HerA, central domain AAA_10 PF12846.7 362 pAAFJ01000010_00022 - 459 1.3e-05 24.3 0.3 1 2 9.7e-06 0.012 14.5 0.0 20 71 48 98 44 234 0.74 AAA-like domain AAA_10 PF12846.7 362 pAAFJ01000010_00022 - 459 1.3e-05 24.3 0.3 2 2 0.0015 1.9 7.3 0.0 263 312 326 382 320 391 0.84 AAA-like domain DUF853 PF05872.12 504 pAAFJ01000010_00022 - 459 0.0034 16.0 0.0 1 2 5.9e-06 0.0076 14.9 0.0 14 67 40 95 28 125 0.78 Bacterial protein of unknown function (DUF853) DUF853 PF05872.12 504 pAAFJ01000010_00022 - 459 0.0034 16.0 0.0 2 2 2.8 3.6e+03 -3.9 0.0 213 265 262 316 258 320 0.65 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.6 137 pAAFJ01000010_00022 - 459 0.007 16.6 0.0 1 1 1.8e-05 0.023 15.0 0.0 4 29 48 73 45 109 0.85 AAA domain AAA_16 PF13191.6 170 pAAFJ01000010_00022 - 459 0.016 15.6 0.0 1 3 6.1e-05 0.078 13.4 0.0 23 61 48 88 43 112 0.68 AAA ATPase domain AAA_16 PF13191.6 170 pAAFJ01000010_00022 - 459 0.016 15.6 0.0 2 3 5.2 6.7e+03 -2.7 0.0 7 7 189 189 147 223 0.52 AAA ATPase domain AAA_16 PF13191.6 170 pAAFJ01000010_00022 - 459 0.016 15.6 0.0 3 3 3.2 4.1e+03 -2.0 0.0 106 129 341 372 275 378 0.65 AAA ATPase domain ATPase_2 PF01637.18 233 pAAFJ01000010_00022 - 459 0.018 14.9 0.1 1 1 5e-05 0.064 13.2 0.1 21 57 50 86 43 241 0.85 ATPase domain predominantly from Archaea ABC_tran PF00005.27 137 pAAFJ01000010_00022 - 459 0.034 14.7 0.1 1 1 7.6e-05 0.097 13.2 0.1 15 80 53 171 47 350 0.76 ABC transporter Zeta_toxin PF06414.12 199 pAAFJ01000010_00022 - 459 0.042 13.1 0.0 1 1 6.8e-05 0.087 12.1 0.0 20 51 53 85 43 98 0.85 Zeta toxin DUF1548 PF07579.11 135 pAAFJ01000010_00022 - 459 0.11 12.8 1.9 1 2 0.00034 0.44 10.9 0.2 54 128 194 270 170 276 0.80 Domain of Unknown Function (DUF1548) DUF1548 PF07579.11 135 pAAFJ01000010_00022 - 459 0.11 12.8 1.9 2 2 0.71 9.1e+02 0.1 0.1 23 75 276 331 271 355 0.73 Domain of Unknown Function (DUF1548) FtsK_SpoIIIE PF01580.18 243 pAAFJ01000010_00022 - 459 0.13 11.6 0.0 1 1 0.00022 0.28 10.5 0.0 35 60 43 70 15 95 0.82 FtsK/SpoIIIE family ArlS_N PF18719.1 128 pAAFJ01000010_00022 - 459 0.91 9.7 4.0 1 2 0.25 3.2e+02 1.5 0.6 25 99 180 248 170 274 0.74 ArlS sensor domain ArlS_N PF18719.1 128 pAAFJ01000010_00022 - 459 0.91 9.7 4.0 2 2 0.0016 2.1 8.6 0.2 17 73 322 379 307 386 0.77 ArlS sensor domain OSTMP1 PF09777.9 234 pAAFJ01000010_00023 - 269 1.2 8.5 3.2 1 2 0.00034 6.1 6.2 0.3 184 221 118 157 108 166 0.86 Osteopetrosis-associated transmembrane protein 1 precursor OSTMP1 PF09777.9 234 pAAFJ01000010_00023 - 269 1.2 8.5 3.2 2 2 0.0034 61 2.9 0.2 192 228 233 267 203 269 0.73 Osteopetrosis-associated transmembrane protein 1 precursor MnmE_helical PF12631.7 206 pAAFJ01000010_00024 - 221 0.44 10.7 1.7 1 1 3.9e-05 0.7 10.0 1.7 30 90 16 74 8 217 0.69 MnmE helical domain HTH_3 PF01381.22 55 pAAFJ01000010_00025 - 86 1.2e-10 41.3 0.0 1 1 4.3e-14 1.9e-10 40.6 0.0 1 55 13 67 13 67 0.97 Helix-turn-helix HTH_19 PF12844.7 65 pAAFJ01000010_00025 - 86 1.2e-08 34.8 0.0 1 1 3.3e-12 1.5e-08 34.5 0.0 1 64 10 72 10 73 0.97 Helix-turn-helix domain HTH_31 PF13560.6 64 pAAFJ01000010_00025 - 86 4.5e-05 23.7 0.0 1 2 2.3e-08 0.0001 22.5 0.0 2 47 9 53 8 67 0.89 Helix-turn-helix domain HTH_31 PF13560.6 64 pAAFJ01000010_00025 - 86 4.5e-05 23.7 0.0 2 2 0.57 2.5e+03 -1.1 0.0 31 47 64 80 61 83 0.70 Helix-turn-helix domain APG12 PF04110.13 87 pAAFJ01000010_00025 - 86 0.1 13.0 0.0 1 1 2.9e-05 0.13 12.7 0.0 34 78 24 68 8 72 0.82 Ubiquitin-like autophagy protein Apg12 AAA_19 PF13245.6 146 pAAFJ01000010_00026 - 487 6.3e-14 52.5 0.2 1 2 3.1e-15 4.6e-12 46.5 0.0 6 146 12 233 6 233 0.79 AAA domain AAA_19 PF13245.6 146 pAAFJ01000010_00026 - 487 6.3e-14 52.5 0.2 2 2 0.045 68 3.8 0.1 54 126 309 383 263 391 0.68 AAA domain UvrD-helicase PF00580.21 315 pAAFJ01000010_00026 - 487 6.5e-12 45.6 17.8 1 3 1.7e-05 0.026 14.1 0.2 1 33 3 36 3 125 0.77 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 pAAFJ01000010_00026 - 487 6.5e-12 45.6 17.8 2 3 5.5e-13 8.3e-10 38.7 1.7 246 311 182 244 129 250 0.72 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 pAAFJ01000010_00026 - 487 6.5e-12 45.6 17.8 3 3 1.5 2.3e+03 -2.2 3.8 168 231 318 439 245 485 0.47 UvrD/REP helicase N-terminal domain Viral_helicase1 PF01443.18 234 pAAFJ01000010_00026 - 487 6.1e-11 42.5 0.3 1 3 0.0024 3.6 7.3 0.0 2 55 20 75 19 82 0.72 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 pAAFJ01000010_00026 - 487 6.1e-11 42.5 0.3 2 3 1.9e-08 2.8e-05 24.0 0.1 44 198 175 330 133 332 0.73 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 pAAFJ01000010_00026 - 487 6.1e-11 42.5 0.3 3 3 0.0018 2.7 7.7 0.0 186 230 409 464 356 467 0.76 Viral (Superfamily 1) RNA helicase UvrD_C PF13361.6 349 pAAFJ01000010_00026 - 487 4.3e-10 39.5 16.6 1 2 0.2 3e+02 0.6 0.1 260 294 41 75 30 76 0.81 UvrD-like helicase C-terminal domain UvrD_C PF13361.6 349 pAAFJ01000010_00026 - 487 4.3e-10 39.5 16.6 2 2 3.2e-13 4.7e-10 39.4 12.7 189 345 160 467 101 469 0.68 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 52 pAAFJ01000010_00026 - 487 6e-09 35.6 0.0 1 1 3.2e-11 4.8e-08 32.7 0.0 5 50 409 465 406 467 0.88 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 192 pAAFJ01000010_00026 - 487 8.1e-06 25.7 0.0 1 2 3e-06 0.0045 16.7 0.0 2 79 3 79 2 98 0.71 AAA domain AAA_30 PF13604.6 192 pAAFJ01000010_00026 - 487 8.1e-06 25.7 0.0 2 2 0.0035 5.2 6.7 0.0 84 161 187 263 154 287 0.69 AAA domain PhoH PF02562.16 205 pAAFJ01000010_00026 - 487 0.00049 19.6 0.2 1 3 0.0026 3.9 6.9 0.0 6 50 4 43 1 63 0.74 PhoH-like protein PhoH PF02562.16 205 pAAFJ01000010_00026 - 487 0.00049 19.6 0.2 2 3 0.00031 0.47 9.9 0.0 118 186 191 253 188 268 0.77 PhoH-like protein PhoH PF02562.16 205 pAAFJ01000010_00026 - 487 0.00049 19.6 0.2 3 3 3.2 4.8e+03 -3.2 0.0 69 92 368 391 366 409 0.77 PhoH-like protein DUF2075 PF09848.9 363 pAAFJ01000010_00026 - 487 0.02 14.2 0.3 1 2 0.0022 3.2 6.9 0.0 3 53 18 64 16 88 0.81 Uncharacterized conserved protein (DUF2075) DUF2075 PF09848.9 363 pAAFJ01000010_00026 - 487 0.02 14.2 0.3 2 2 0.0087 13 4.9 0.1 74 183 176 270 138 308 0.75 Uncharacterized conserved protein (DUF2075) Peptidase_M6 PF05547.11 656 pAAFJ01000010_00026 - 487 0.025 12.9 0.1 1 1 2.5e-05 0.037 12.4 0.1 432 493 176 235 152 259 0.82 Immune inhibitor A peptidase M6 Helicase_RecD PF05127.14 177 pAAFJ01000010_00026 - 487 0.04 13.8 0.7 1 3 0.063 94 2.8 0.0 2 46 21 65 20 93 0.67 Helicase Helicase_RecD PF05127.14 177 pAAFJ01000010_00026 - 487 0.04 13.8 0.7 2 3 0.0014 2 8.2 0.0 77 159 179 258 135 267 0.74 Helicase Helicase_RecD PF05127.14 177 pAAFJ01000010_00026 - 487 0.04 13.8 0.7 3 3 2 3e+03 -2.1 0.0 55 98 431 474 409 475 0.76 Helicase AAA_11 PF13086.6 261 pAAFJ01000010_00026 - 487 0.11 12.3 0.5 1 3 0.013 19 4.9 0.0 19 64 18 67 4 93 0.64 AAA domain AAA_11 PF13086.6 261 pAAFJ01000010_00026 - 487 0.11 12.3 0.5 2 3 0.021 31 4.2 0.0 209 253 184 227 180 227 0.84 AAA domain AAA_11 PF13086.6 261 pAAFJ01000010_00026 - 487 0.11 12.3 0.5 3 3 0.8 1.2e+03 -1.0 0.1 162 206 370 414 253 442 0.55 AAA domain ResIII PF04851.15 171 pAAFJ01000010_00026 - 487 0.34 10.9 8.2 1 3 4.4e-05 0.065 13.2 1.8 27 84 19 72 4 254 0.77 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pAAFJ01000010_00026 - 487 0.34 10.9 8.2 2 3 1.7 2.5e+03 -1.7 0.0 72 107 268 306 225 326 0.62 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pAAFJ01000010_00026 - 487 0.34 10.9 8.2 3 3 2.8 4.1e+03 -2.4 0.1 84 96 376 397 331 428 0.49 Type III restriction enzyme, res subunit Thioredoxin_7 PF13899.6 83 pAAFJ01000010_00027 - 141 4.1e-05 23.7 0.0 1 1 1.2e-08 5.2e-05 23.4 0.0 8 63 30 85 23 106 0.75 Thioredoxin-like Thioredoxin_2 PF13098.6 109 pAAFJ01000010_00027 - 141 0.00038 20.9 0.4 1 1 2.5e-07 0.0011 19.4 0.4 4 50 37 79 34 128 0.82 Thioredoxin-like domain Thioredox_DsbH PF03190.15 163 pAAFJ01000010_00027 - 141 0.047 13.6 0.2 1 1 1.2e-05 0.055 13.4 0.2 29 81 31 83 25 133 0.92 Protein of unknown function, DUF255 Redoxin PF08534.10 147 pAAFJ01000010_00027 - 141 0.17 11.6 0.0 1 1 4.6e-05 0.2 11.3 0.0 24 70 33 80 24 110 0.85 Redoxin TrbC_Ftype PF09673.10 112 pAAFJ01000010_00028 - 313 2e-16 60.0 0.0 1 1 7.7e-20 3.5e-16 59.3 0.0 1 112 158 289 158 289 0.85 Type-F conjugative transfer system pilin assembly protein DUF1694 PF07997.11 117 pAAFJ01000010_00028 - 313 0.0015 18.6 0.5 1 1 1.9e-06 0.0085 16.2 0.5 40 92 134 186 120 192 0.90 Protein of unknown function (DUF1694) DUF3502 PF12010.8 130 pAAFJ01000010_00028 - 313 0.028 15.0 2.0 1 2 2.4 1.1e+04 -3.0 4.5 69 69 101 101 19 189 0.60 Domain of unknown function (DUF3502) DUF3502 PF12010.8 130 pAAFJ01000010_00028 - 313 0.028 15.0 2.0 2 2 6.3e-06 0.028 15.0 2.0 51 124 236 308 190 310 0.78 Domain of unknown function (DUF3502) Thioredoxin PF00085.20 103 pAAFJ01000010_00028 - 313 0.039 14.0 0.3 1 1 2.5e-05 0.11 12.5 0.3 52 94 223 266 212 273 0.82 Thioredoxin TraU PF06834.11 307 pAAFJ01000010_00029 - 333 9.6e-97 323.9 0.0 1 1 6.1e-101 1.1e-96 323.8 0.0 1 306 34 332 34 333 0.95 TraU protein RhoGAP PF00620.27 152 pAAFJ01000010_00031 - 199 0.0012 18.7 1.6 1 2 1.3e-07 0.0012 18.7 1.6 24 112 47 132 37 134 0.81 RhoGAP domain RhoGAP PF00620.27 152 pAAFJ01000010_00031 - 199 0.0012 18.7 1.6 2 2 0.49 4.4e+03 -2.6 0.0 47 55 170 178 135 192 0.49 RhoGAP domain DUF4252 PF14060.6 157 pAAFJ01000010_00031 - 199 0.32 10.9 8.4 1 2 0.13 1.2e+03 -0.7 0.1 111 125 26 40 4 65 0.47 Domain of unknown function (DUF4252) DUF4252 PF14060.6 157 pAAFJ01000010_00031 - 199 0.32 10.9 8.4 2 2 9.6e-06 0.086 12.7 4.0 28 94 81 146 72 154 0.84 Domain of unknown function (DUF4252) ALP_N PF17989.1 147 pAAFJ01000010_00034 - 305 7.7e-13 48.9 0.1 1 1 1.4e-16 1.3e-12 48.1 0.1 1 122 9 125 9 143 0.83 Actin like proteins N terminal domain FtsA PF14450.6 103 pAAFJ01000010_00034 - 305 0.00018 21.9 0.2 1 2 0.00094 8.4 6.9 0.0 1 17 8 24 8 37 0.87 Cell division protein FtsA FtsA PF14450.6 103 pAAFJ01000010_00034 - 305 0.00018 21.9 0.2 2 2 1.1e-05 0.099 13.1 0.0 1 43 157 201 157 285 0.80 Cell division protein FtsA DUF4879 PF16219.5 124 pAAFJ01000010_00035 - 90 0.0012 19.0 0.2 1 1 7.4e-08 0.0013 18.9 0.2 54 105 22 73 4 83 0.87 Domain of unknown function (DUF4879) YopX PF09643.10 131 pAAFJ01000010_00036 - 148 3e-12 46.7 2.7 1 2 0.0081 1.5e+02 2.5 0.0 2 15 8 21 7 29 0.87 YopX protein YopX PF09643.10 131 pAAFJ01000010_00036 - 148 3e-12 46.7 2.7 2 2 1.3e-15 2.3e-11 43.9 1.0 44 131 32 127 20 127 0.72 YopX protein DUF4600 PF15372.6 128 pAAFJ01000010_00037 - 82 0.0093 16.4 0.2 1 1 1.2e-06 0.011 16.2 0.2 37 96 7 67 2 81 0.80 Domain of unknown function (DUF4600) TMF_TATA_bd PF12325.8 115 pAAFJ01000010_00037 - 82 0.023 14.9 0.1 1 1 3.9e-06 0.035 14.3 0.1 27 59 22 54 14 78 0.86 TATA element modulatory factor 1 TATA binding YopX PF09643.10 131 pAAFJ01000010_00038 - 120 2.8e-08 33.9 0.6 1 1 2.2e-12 4e-08 33.4 0.6 49 131 42 119 4 119 0.75 YopX protein HTH_17 PF12728.7 51 pAAFJ01000010_00041 - 169 2.5e-07 30.7 0.0 1 2 0.00089 1.2 9.3 0.0 2 27 29 55 28 65 0.77 Helix-turn-helix domain HTH_17 PF12728.7 51 pAAFJ01000010_00041 - 169 2.5e-07 30.7 0.0 2 2 8.2e-07 0.0011 19.1 0.0 5 27 99 121 90 127 0.92 Helix-turn-helix domain HTH_3 PF01381.22 55 pAAFJ01000010_00041 - 169 1.6e-05 24.8 0.0 1 2 4.9e-05 0.067 13.3 0.0 2 29 21 48 20 59 0.89 Helix-turn-helix HTH_3 PF01381.22 55 pAAFJ01000010_00041 - 169 1.6e-05 24.8 0.0 2 2 0.0012 1.7 8.8 0.0 6 29 92 115 89 125 0.90 Helix-turn-helix HTH_19 PF12844.7 65 pAAFJ01000010_00041 - 169 6.8e-05 22.8 0.5 1 2 2.3e-06 0.0032 17.4 0.2 8 64 24 106 17 107 0.88 Helix-turn-helix domain HTH_19 PF12844.7 65 pAAFJ01000010_00041 - 169 6.8e-05 22.8 0.5 2 2 0.0017 2.4 8.2 0.0 10 32 93 115 88 144 0.84 Helix-turn-helix domain MerR PF00376.23 38 pAAFJ01000010_00041 - 169 0.00015 21.4 0.0 1 2 0.0015 2 8.3 0.0 1 19 30 48 30 56 0.94 MerR family regulatory protein MerR PF00376.23 38 pAAFJ01000010_00041 - 169 0.00015 21.4 0.0 2 2 0.0002 0.27 11.0 0.0 4 21 100 117 99 125 0.88 MerR family regulatory protein HTH_26 PF13443.6 63 pAAFJ01000010_00041 - 169 0.0011 19.4 0.1 1 2 0.023 31 5.1 0.0 5 31 23 49 12 59 0.85 Cro/C1-type HTH DNA-binding domain HTH_26 PF13443.6 63 pAAFJ01000010_00041 - 169 0.0011 19.4 0.1 2 2 0.00019 0.26 11.8 0.1 4 42 89 125 88 129 0.88 Cro/C1-type HTH DNA-binding domain Phage_CI_repr PF07022.13 65 pAAFJ01000010_00041 - 169 0.0014 18.7 0.0 1 2 0.97 1.3e+03 -0.5 0.0 16 26 32 42 24 65 0.80 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 pAAFJ01000010_00041 - 169 0.0014 18.7 0.0 2 2 5.3e-06 0.0073 16.4 0.0 5 46 89 129 86 136 0.83 Bacteriophage CI repressor helix-turn-helix domain Terminase_5 PF06056.12 58 pAAFJ01000010_00041 - 169 0.0024 17.7 0.2 1 3 0.65 9e+02 -0.1 0.0 21 34 36 49 30 53 0.83 Putative ATPase subunit of terminase (gpP-like) Terminase_5 PF06056.12 58 pAAFJ01000010_00041 - 169 0.0024 17.7 0.2 2 3 0.77 1.1e+03 -0.4 0.1 29 49 58 78 41 83 0.73 Putative ATPase subunit of terminase (gpP-like) Terminase_5 PF06056.12 58 pAAFJ01000010_00041 - 169 0.0024 17.7 0.2 3 3 2.7e-05 0.037 13.9 0.0 17 37 99 119 97 128 0.86 Putative ATPase subunit of terminase (gpP-like) HTH_Crp_2 PF13545.6 68 pAAFJ01000010_00041 - 169 0.0028 17.6 0.0 1 3 0.29 4e+02 1.1 0.0 17 38 24 45 9 48 0.77 Crp-like helix-turn-helix domain HTH_Crp_2 PF13545.6 68 pAAFJ01000010_00041 - 169 0.0028 17.6 0.0 2 3 3.8e-05 0.053 13.5 0.0 17 38 91 112 67 114 0.79 Crp-like helix-turn-helix domain HTH_Crp_2 PF13545.6 68 pAAFJ01000010_00041 - 169 0.0028 17.6 0.0 3 3 2.9 3.9e+03 -2.1 0.0 4 13 139 148 129 169 0.50 Crp-like helix-turn-helix domain HTH_23 PF13384.6 50 pAAFJ01000010_00041 - 169 0.0046 16.7 0.0 1 3 0.013 17 5.3 0.0 17 37 28 48 22 52 0.82 Homeodomain-like domain HTH_23 PF13384.6 50 pAAFJ01000010_00041 - 169 0.0046 16.7 0.0 2 3 2.8 3.9e+03 -2.2 0.1 34 42 59 67 59 73 0.72 Homeodomain-like domain HTH_23 PF13384.6 50 pAAFJ01000010_00041 - 169 0.0046 16.7 0.0 3 3 0.0016 2.2 8.2 0.0 21 37 99 115 89 120 0.91 Homeodomain-like domain MerR_1 PF13411.6 69 pAAFJ01000010_00041 - 169 0.0086 16.2 0.0 1 2 0.034 47 4.2 0.0 2 24 30 52 29 67 0.84 MerR HTH family regulatory protein MerR_1 PF13411.6 69 pAAFJ01000010_00041 - 169 0.0086 16.2 0.0 2 2 0.00081 1.1 9.4 0.0 5 24 100 119 98 128 0.85 MerR HTH family regulatory protein SL4P PF17618.2 88 pAAFJ01000010_00041 - 169 0.026 14.6 1.6 1 2 0.0034 4.7 7.3 0.3 30 45 17 32 9 36 0.87 Uncharacterized Strongylid L4 protein SL4P PF17618.2 88 pAAFJ01000010_00041 - 169 0.026 14.6 1.6 2 2 0.01 14 5.8 0.0 40 79 105 143 97 148 0.83 Uncharacterized Strongylid L4 protein Vps4_C PF09336.10 61 pAAFJ01000010_00041 - 169 0.036 14.1 0.0 1 2 9e-05 0.12 12.3 0.0 8 42 9 42 4 51 0.83 Vps4 C terminal oligomerisation domain Vps4_C PF09336.10 61 pAAFJ01000010_00041 - 169 0.036 14.1 0.0 2 2 3.2 4.5e+03 -2.3 0.0 21 45 135 159 125 163 0.73 Vps4 C terminal oligomerisation domain Phage_terminase PF10668.9 60 pAAFJ01000010_00041 - 169 0.054 13.5 0.1 1 2 0.016 23 5.1 0.0 22 44 28 50 8 53 0.84 Phage terminase small subunit Phage_terminase PF10668.9 60 pAAFJ01000010_00041 - 169 0.054 13.5 0.1 2 2 0.008 11 6.1 0.0 22 42 95 115 76 121 0.84 Phage terminase small subunit SNase PF00565.17 108 pAAFJ01000010_00042 - 197 5.7e-24 84.7 0.4 1 1 1e-27 9.2e-24 84.0 0.4 1 108 90 183 90 183 0.93 Staphylococcal nuclease homologue O-antigen_lig PF13425.6 468 pAAFJ01000010_00042 - 197 0.022 13.6 4.2 1 1 3e-06 0.027 13.3 4.2 230 377 6 166 3 180 0.73 O-antigen ligase like membrane protein DUF4065 PF13274.6 114 pAAFJ01000010_00043 - 56 0.001 19.9 0.8 1 2 0.64 1.1e+04 -2.8 0.0 64 66 14 16 3 27 0.48 Protein of unknown function (DUF4065) DUF4065 PF13274.6 114 pAAFJ01000010_00043 - 56 0.001 19.9 0.8 2 2 7.4e-08 0.0013 19.6 0.5 1 27 30 56 30 56 0.95 Protein of unknown function (DUF4065) N6_N4_Mtase PF01555.18 231 pAAFJ01000010_00044 - 788 3.2e-15 56.5 7.5 1 3 3.3e-08 0.00012 21.9 0.0 171 223 20 71 8 76 0.90 DNA methylase N6_N4_Mtase PF01555.18 231 pAAFJ01000010_00044 - 788 3.2e-15 56.5 7.5 2 3 0.15 5.3e+02 0.1 0.6 95 116 87 128 81 241 0.62 DNA methylase N6_N4_Mtase PF01555.18 231 pAAFJ01000010_00044 - 788 3.2e-15 56.5 7.5 3 3 4.3e-12 1.5e-08 34.6 1.9 1 92 336 449 336 506 0.80 DNA methylase UPF0020 PF01170.18 197 pAAFJ01000010_00044 - 788 4.1e-06 26.6 0.0 1 2 0.00011 0.39 10.4 0.0 28 55 39 66 35 154 0.74 Putative RNA methylase family UPF0020 UPF0020 PF01170.18 197 pAAFJ01000010_00044 - 788 4.1e-06 26.6 0.0 2 2 1.4e-05 0.051 13.3 0.0 75 132 287 346 254 351 0.80 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 182 pAAFJ01000010_00044 - 788 0.0038 16.9 0.0 1 2 0.00014 0.5 10.0 0.0 34 79 28 76 10 145 0.80 Conserved hypothetical protein 95 Cons_hypoth95 PF03602.15 182 pAAFJ01000010_00044 - 788 0.0038 16.9 0.0 2 2 0.011 38 3.9 0.0 104 124 326 346 288 356 0.71 Conserved hypothetical protein 95 AviRa PF11599.8 234 pAAFJ01000010_00044 - 788 0.021 14.3 0.6 1 3 2.7 9.8e+03 -4.3 0.0 57 65 43 51 37 55 0.82 RRNA methyltransferase AviRa AviRa PF11599.8 234 pAAFJ01000010_00044 - 788 0.021 14.3 0.6 2 3 3.4e-05 0.12 11.8 0.0 111 182 284 351 265 355 0.77 RRNA methyltransferase AviRa AviRa PF11599.8 234 pAAFJ01000010_00044 - 788 0.021 14.3 0.6 3 3 0.19 6.9e+02 -0.5 0.0 192 218 395 420 385 433 0.71 RRNA methyltransferase AviRa Stork_head PF10264.9 79 pAAFJ01000010_00044 - 788 0.049 13.8 0.0 1 1 3.8e-05 0.13 12.4 0.0 9 62 563 616 559 627 0.91 Winged helix Storkhead-box1 domain N6_N4_Mtase PF01555.18 231 pAAFJ01000010_00045 - 277 9.5e-26 90.9 0.2 1 2 1.4e-17 2e-14 53.9 0.0 134 230 10 100 1 101 0.82 DNA methylase N6_N4_Mtase PF01555.18 231 pAAFJ01000010_00045 - 277 9.5e-26 90.9 0.2 2 2 5.4e-12 8.1e-09 35.5 0.2 1 73 132 238 132 277 0.80 DNA methylase Methyltransf_25 PF13649.6 97 pAAFJ01000010_00045 - 277 2.4e-08 34.6 0.0 1 2 1.2e-10 1.7e-07 31.8 0.0 1 77 65 145 65 157 0.84 Methyltransferase domain Methyltransf_25 PF13649.6 97 pAAFJ01000010_00045 - 277 2.4e-08 34.6 0.0 2 2 0.86 1.3e+03 0.2 0.0 81 95 191 205 163 206 0.79 Methyltransferase domain Methyltransf_11 PF08241.12 96 pAAFJ01000010_00045 - 277 3.1e-08 34.2 0.0 1 2 1.9e-08 2.9e-05 24.6 0.0 1 68 66 138 66 154 0.90 Methyltransferase domain Methyltransf_11 PF08241.12 96 pAAFJ01000010_00045 - 277 3.1e-08 34.2 0.0 2 2 0.0036 5.4 7.7 0.0 48 94 162 209 141 211 0.76 Methyltransferase domain Methyltransf_31 PF13847.6 152 pAAFJ01000010_00045 - 277 6.3e-08 32.5 0.1 1 1 7.7e-11 1.2e-07 31.7 0.1 2 106 60 208 59 258 0.71 Methyltransferase domain MTS PF05175.14 169 pAAFJ01000010_00045 - 277 2.1e-06 27.4 0.0 1 1 2.2e-09 3.2e-06 26.8 0.0 23 165 54 208 44 212 0.74 Methyltransferase small domain UPF0020 PF01170.18 197 pAAFJ01000010_00045 - 277 4.7e-05 23.2 0.1 1 1 1.1e-06 0.0016 18.1 0.1 32 139 65 149 56 156 0.79 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 165 pAAFJ01000010_00045 - 277 0.0002 21.0 0.1 1 2 5.9e-07 0.00089 18.9 0.0 3 81 64 141 62 146 0.90 RNA cap guanine-N2 methyltransferase Methyltransf_15 PF09445.10 165 pAAFJ01000010_00045 - 277 0.0002 21.0 0.1 2 2 0.75 1.1e+03 -1.0 0.0 40 69 180 210 172 239 0.75 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 182 pAAFJ01000010_00045 - 277 0.0027 17.4 0.0 1 1 3.2e-06 0.0048 16.6 0.0 42 126 62 144 52 159 0.80 Conserved hypothetical protein 95 N6_Mtase PF02384.16 312 pAAFJ01000010_00045 - 277 0.0058 15.9 0.0 1 1 6.4e-06 0.0096 15.2 0.0 36 136 53 142 45 169 0.78 N-6 DNA Methylase Methyltransf_12 PF08242.12 99 pAAFJ01000010_00045 - 277 0.024 15.4 0.0 1 2 4.5e-05 0.068 13.9 0.0 1 86 66 152 66 157 0.84 Methyltransferase domain Methyltransf_12 PF08242.12 99 pAAFJ01000010_00045 - 277 0.024 15.4 0.0 2 2 3.8 5.7e+03 -1.9 0.0 77 94 187 204 149 206 0.66 Methyltransferase domain Methyltransf_23 PF13489.6 165 pAAFJ01000010_00045 - 277 0.027 14.3 0.0 1 1 4.5e-05 0.068 13.0 0.0 12 62 50 120 39 243 0.75 Methyltransferase domain PrmA PF06325.13 296 pAAFJ01000010_00045 - 277 0.15 11.4 0.0 1 1 0.00015 0.22 10.9 0.0 158 232 58 137 48 153 0.73 Ribosomal protein L11 methyltransferase (PrmA) DUF1883 PF08980.10 89 pAAFJ01000010_00046 - 99 0.15 12.0 0.3 1 2 0.08 1.4e+03 -0.8 0.0 14 33 8 27 2 37 0.67 Domain of unknown function (DUF1883) DUF1883 PF08980.10 89 pAAFJ01000010_00046 - 99 0.15 12.0 0.3 2 2 2.3e-05 0.41 10.6 0.1 3 39 41 78 39 90 0.77 Domain of unknown function (DUF1883) ParE_toxin PF05016.15 90 pAAFJ01000010_00047 - 95 3.8e-09 37.0 0.2 1 1 7.8e-13 4.7e-09 36.8 0.2 2 90 6 94 5 94 0.80 ParE toxin of type II toxin-antitoxin system, parDE YafQ_toxin PF15738.5 88 pAAFJ01000010_00047 - 95 0.0008 19.7 0.2 1 1 1.7e-07 0.00099 19.4 0.2 1 86 3 93 3 95 0.78 Bacterial toxin of type II toxin-antitoxin system, YafQ IKKbetaNEMObind PF12179.8 37 pAAFJ01000010_00047 - 95 0.09 12.8 0.2 1 1 2.7e-05 0.16 12.0 0.2 6 27 22 43 21 46 0.92 I-kappa-kinase-beta NEMO binding domain RHH_5 PF07878.11 43 pAAFJ01000010_00048 - 76 0.00016 21.5 0.0 1 1 6.6e-08 0.00024 20.9 0.0 3 35 9 41 7 46 0.93 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 RHH_3 PF12651.7 44 pAAFJ01000010_00048 - 76 0.00048 20.0 0.0 1 1 2.5e-07 0.00088 19.2 0.0 5 39 10 44 8 46 0.92 Ribbon-helix-helix domain HicB_lk_antitox PF15919.5 123 pAAFJ01000010_00048 - 76 0.012 15.7 0.0 1 1 5.3e-06 0.019 15.1 0.0 88 122 6 40 2 41 0.94 HicB_like antitoxin of bacterial toxin-antitoxin system CcdA PF07362.12 71 pAAFJ01000010_00048 - 76 0.025 15.0 0.1 1 1 9.6e-06 0.034 14.6 0.1 7 60 17 75 12 76 0.81 Post-segregation antitoxin CcdA PuR_N PF09182.10 70 pAAFJ01000010_00048 - 76 0.16 11.9 0.1 1 1 5.7e-05 0.2 11.6 0.1 11 43 9 43 5 60 0.79 Bacterial purine repressor, N-terminal Bro-N PF02498.17 95 pAAFJ01000010_00049 - 281 1.6e-22 80.0 2.7 1 2 5.2e-26 1.9e-22 79.8 0.0 1 95 26 116 26 116 0.85 BRO family, N-terminal domain Bro-N PF02498.17 95 pAAFJ01000010_00049 - 281 1.6e-22 80.0 2.7 2 2 0.89 3.2e+03 -1.1 1.4 37 44 179 186 145 237 0.58 BRO family, N-terminal domain HTH_3 PF01381.22 55 pAAFJ01000010_00049 - 281 2e-07 31.0 0.1 1 1 1.9e-10 6.7e-07 29.3 0.1 2 55 206 260 205 260 0.97 Helix-turn-helix HTH_19 PF12844.7 65 pAAFJ01000010_00049 - 281 4.5e-07 29.8 0.1 1 4 2 7.1e+03 -2.9 0.0 17 33 49 65 42 68 0.69 Helix-turn-helix domain HTH_19 PF12844.7 65 pAAFJ01000010_00049 - 281 4.5e-07 29.8 0.1 2 4 0.39 1.4e+03 -0.6 0.0 36 48 97 109 76 131 0.67 Helix-turn-helix domain HTH_19 PF12844.7 65 pAAFJ01000010_00049 - 281 4.5e-07 29.8 0.1 3 4 1 3.7e+03 -2.0 0.2 15 27 165 180 154 184 0.55 Helix-turn-helix domain HTH_19 PF12844.7 65 pAAFJ01000010_00049 - 281 4.5e-07 29.8 0.1 4 4 1.2e-10 4.5e-07 29.8 0.1 1 64 202 265 202 266 0.94 Helix-turn-helix domain ZapD PF07072.11 210 pAAFJ01000010_00049 - 281 0.00027 20.7 3.0 1 2 3.8e-06 0.014 15.2 0.1 17 67 32 82 18 123 0.87 Cell division protein ZapD PF07072.11 210 pAAFJ01000010_00049 - 281 0.00027 20.7 3.0 2 2 0.0047 17 5.1 0.6 67 102 144 179 131 184 0.87 Cell division protein HTH_31 PF13560.6 64 pAAFJ01000010_00049 - 281 0.0048 17.2 0.0 1 1 2.6e-06 0.0092 16.3 0.0 2 46 201 245 200 260 0.85 Helix-turn-helix domain SLT PF01464.20 117 pAAFJ01000010_00050 - 143 3.1e-22 78.4 0.0 1 1 8.1e-26 3.6e-22 78.2 0.0 2 96 18 116 17 134 0.92 Transglycosylase SLT domain Glucosaminidase PF01832.20 87 pAAFJ01000010_00050 - 143 0.017 15.6 0.2 1 1 7.8e-06 0.035 14.6 0.2 2 43 17 61 16 136 0.55 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Lys PF00062.20 124 pAAFJ01000010_00050 - 143 0.07 13.4 0.1 1 1 3.6e-05 0.16 12.2 0.0 31 62 36 68 27 89 0.82 C-type lysozyme/alpha-lactalbumin family UPF0146 PF03686.13 129 pAAFJ01000010_00050 - 143 0.084 12.7 0.0 1 1 2.9e-05 0.13 12.1 0.0 37 73 57 96 45 99 0.79 Uncharacterised protein family (UPF0146) YafQ_toxin PF15738.5 88 pAAFJ01000010_00052 - 101 9.3e-26 90.0 0.7 1 1 1.2e-29 1.1e-25 89.8 0.7 4 88 15 99 12 99 0.97 Bacterial toxin of type II toxin-antitoxin system, YafQ ASL_C PF08328.11 115 pAAFJ01000010_00052 - 101 0.12 12.5 0.1 1 1 2.1e-05 0.19 11.8 0.1 59 99 7 47 2 57 0.89 Adenylosuccinate lyase C-terminal DDE_Tnp_1_7 PF13843.6 350 pAAFJ01000010_00053 - 103 0.0083 15.5 1.0 1 1 2.5e-06 0.009 15.3 1.0 84 128 14 57 12 88 0.89 Transposase IS4 LETM1 PF07766.13 268 pAAFJ01000010_00053 - 103 0.009 15.4 4.8 1 1 2.9e-06 0.01 15.2 4.8 91 135 22 73 13 96 0.67 LETM1-like protein Baculo_p24 PF05073.12 182 pAAFJ01000010_00053 - 103 0.035 13.9 2.5 1 1 1.1e-05 0.038 13.8 2.5 92 174 13 101 2 103 0.74 Baculovirus P24 capsid protein PIEZO PF15917.5 228 pAAFJ01000010_00053 - 103 0.073 12.5 5.7 1 1 2.3e-05 0.084 12.3 5.7 94 151 12 70 8 93 0.70 Piezo DUF4446 PF14584.6 150 pAAFJ01000010_00053 - 103 1.3 9.0 6.0 1 1 0.00046 1.6 8.7 5.6 24 93 19 90 14 94 0.83 Protein of unknown function (DUF4446) Oxidored_q3 PF00499.20 144 pAAFJ01000010_00054 - 210 0.0036 17.0 0.2 1 1 2e-06 0.0052 16.5 0.2 8 61 132 196 127 210 0.81 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TctA PF01970.16 409 pAAFJ01000010_00054 - 210 0.016 14.0 0.6 1 1 8.4e-06 0.022 13.5 0.6 258 376 64 183 42 186 0.73 Tripartite tricarboxylate transporter TctA family Carbpep_Y_N PF05388.11 125 pAAFJ01000010_00054 - 210 0.027 15.0 2.7 1 2 1.1e-05 0.027 15.0 0.8 24 106 3 87 1 98 0.76 Carboxypeptidase Y pro-peptide Carbpep_Y_N PF05388.11 125 pAAFJ01000010_00054 - 210 0.027 15.0 2.7 2 2 0.61 1.6e+03 -0.4 0.1 43 65 102 124 86 140 0.58 Carboxypeptidase Y pro-peptide Phage_holin_3_6 PF07332.11 113 pAAFJ01000010_00054 - 210 0.11 12.6 0.3 1 1 6.9e-05 0.18 11.9 0.3 45 103 135 198 131 205 0.55 Putative Actinobacterial Holin-X, holin superfamily III RseC_MucC PF04246.12 130 pAAFJ01000010_00054 - 210 0.13 12.2 1.3 1 1 8.1e-05 0.21 11.6 1.3 67 120 137 191 132 198 0.75 Positive regulator of sigma(E), RseC/MucC DUF2207 PF09972.9 492 pAAFJ01000010_00054 - 210 0.27 10.0 7.3 1 1 0.00014 0.35 9.6 7.3 273 446 23 198 12 203 0.51 Predicted membrane protein (DUF2207) Spore_YhaL PF14147.6 52 pAAFJ01000010_00054 - 210 4 7.2 5.2 1 2 0.00068 1.7 8.4 0.6 6 24 141 159 138 165 0.90 Sporulation protein YhaL Spore_YhaL PF14147.6 52 pAAFJ01000010_00054 - 210 4 7.2 5.2 2 2 0.28 7.1e+02 -0.0 0.4 20 32 182 192 166 207 0.48 Sporulation protein YhaL Bacillus_PapR PF05968.11 45 pAAFJ01000010_00055 - 93 0.022 14.6 0.1 1 1 5.4e-06 0.048 13.5 0.1 1 30 1 34 1 37 0.85 Bacillus PapR protein YtpI PF14007.6 87 pAAFJ01000010_00055 - 93 0.024 14.8 9.1 1 3 0.0029 26 5.1 0.3 36 58 5 27 2 28 0.88 YtpI-like protein YtpI PF14007.6 87 pAAFJ01000010_00055 - 93 0.024 14.8 9.1 2 3 4.3e-06 0.038 14.1 0.1 49 76 36 63 33 67 0.90 YtpI-like protein YtpI PF14007.6 87 pAAFJ01000010_00055 - 93 0.024 14.8 9.1 3 3 0.059 5.3e+02 0.8 0.7 42 52 65 75 61 90 0.52 YtpI-like protein TraL PF07178.11 90 pAAFJ01000010_00056 - 101 3.1e-13 50.0 0.5 1 1 2e-17 3.6e-13 49.8 0.5 2 89 10 98 9 99 0.87 TraL protein TraE PF05309.11 182 pAAFJ01000010_00057 - 197 1e-32 113.0 0.8 1 1 7.1e-37 1.3e-32 112.7 0.8 1 180 1 180 1 181 0.97 TraE protein TraK PF06586.11 231 pAAFJ01000010_00058 - 260 8.9e-23 81.2 0.2 1 1 1.4e-26 2.6e-22 79.7 0.2 5 215 6 230 3 236 0.88 TraK protein TrbI PF03743.14 187 pAAFJ01000010_00059 - 436 4.8e-35 121.1 1.5 1 1 2.7e-38 8e-35 120.4 1.5 2 186 213 415 212 416 0.93 Bacterial conjugation TrbI-like protein Cep57_CLD PF14073.6 178 pAAFJ01000010_00059 - 436 0.0019 18.2 4.7 1 2 6.4e-07 0.0019 18.2 4.7 40 138 58 157 43 173 0.76 Centrosome localisation domain of Cep57 Cep57_CLD PF14073.6 178 pAAFJ01000010_00059 - 436 0.0019 18.2 4.7 2 2 1.4 4.3e+03 -2.4 0.4 39 48 418 427 401 435 0.38 Centrosome localisation domain of Cep57 O-antigen_lig PF13425.6 468 pAAFJ01000010_00059 - 436 0.08 11.7 8.5 1 1 4.4e-05 0.13 11.0 8.5 234 351 14 147 6 153 0.71 O-antigen ligase like membrane protein YrzK PF17449.2 54 pAAFJ01000010_00059 - 436 0.35 11.2 0.0 1 2 0.00012 0.35 11.2 0.0 14 53 52 93 47 94 0.83 Uncharacterized YrzK-like YrzK PF17449.2 54 pAAFJ01000010_00059 - 436 0.35 11.2 0.0 2 2 6 1.8e+04 -5.1 2.4 44 53 201 210 200 211 0.83 Uncharacterized YrzK-like YabA PF06156.13 102 pAAFJ01000010_00059 - 436 0.61 10.8 11.7 1 3 2.1e-05 0.061 14.0 5.6 17 79 70 147 61 150 0.78 Initiation control protein YabA YabA PF06156.13 102 pAAFJ01000010_00059 - 436 0.61 10.8 11.7 2 3 0.62 1.9e+03 -0.4 0.3 22 31 139 148 131 211 0.57 Initiation control protein YabA YabA PF06156.13 102 pAAFJ01000010_00059 - 436 0.61 10.8 11.7 3 3 2.1 6.2e+03 -2.1 0.1 50 57 418 424 373 435 0.54 Initiation control protein YabA DUF4481 PF14800.6 293 pAAFJ01000010_00059 - 436 9 5.7 6.3 1 2 1.1 3.2e+03 -2.7 0.1 98 132 25 60 20 65 0.69 Domain of unknown function (DUF4481) DUF4481 PF14800.6 293 pAAFJ01000010_00059 - 436 9 5.7 6.3 2 2 0.00051 1.5 8.2 2.3 177 249 84 155 77 165 0.86 Domain of unknown function (DUF4481) Thioredoxin_2 PF13098.6 109 pAAFJ01000010_00060 - 248 1.4e-15 57.6 0.2 1 2 2.5 6.5e+03 -2.4 0.0 92 107 28 43 22 44 0.75 Thioredoxin-like domain Thioredoxin_2 PF13098.6 109 pAAFJ01000010_00060 - 248 1.4e-15 57.6 0.2 2 2 1.4e-18 3.5e-15 56.4 0.1 2 99 121 240 120 247 0.95 Thioredoxin-like domain DsbC_N PF10411.9 54 pAAFJ01000010_00060 - 248 8.2e-10 38.0 0.1 1 1 5.8e-13 1.5e-09 37.2 0.1 2 50 30 79 29 82 0.94 Disulfide bond isomerase protein N-terminus Thioredoxin_4 PF13462.6 166 pAAFJ01000010_00060 - 248 0.0014 18.8 4.8 1 2 0.00015 0.39 10.9 0.3 17 35 128 146 120 157 0.83 Thioredoxin Thioredoxin_4 PF13462.6 166 pAAFJ01000010_00060 - 248 0.0014 18.8 4.8 2 2 0.00031 0.8 9.8 0.5 88 164 162 246 148 247 0.60 Thioredoxin Glutaredoxin PF00462.24 60 pAAFJ01000010_00060 - 248 0.0033 17.6 0.1 1 2 3.9e-06 0.01 16.1 0.0 2 44 129 173 128 186 0.81 Glutaredoxin Glutaredoxin PF00462.24 60 pAAFJ01000010_00060 - 248 0.0033 17.6 0.1 2 2 1.7 4.3e+03 -2.0 0.0 39 55 209 225 191 228 0.63 Glutaredoxin TraF PF13728.6 224 pAAFJ01000010_00060 - 248 0.086 12.7 0.1 1 2 0.014 37 4.0 0.0 126 147 121 142 100 148 0.87 F plasmid transfer operon protein TraF PF13728.6 224 pAAFJ01000010_00060 - 248 0.086 12.7 0.1 2 2 0.0023 6 6.6 0.0 181 212 208 239 184 247 0.76 F plasmid transfer operon protein Thioredoxin_8 PF13905.6 95 pAAFJ01000010_00060 - 248 0.1 12.9 1.3 1 2 0.86 2.2e+03 -1.0 0.0 23 42 49 66 43 108 0.78 Thioredoxin-like Thioredoxin_8 PF13905.6 95 pAAFJ01000010_00060 - 248 0.1 12.9 1.3 2 2 0.00015 0.39 11.1 0.7 2 93 125 230 124 232 0.63 Thioredoxin-like DUF393 PF04134.12 113 pAAFJ01000010_00060 - 248 0.14 13.5 0.0 1 2 6.3 1.6e+04 -2.8 0.0 26 54 83 111 71 120 0.63 Protein of unknown function, DUF393 DUF393 PF04134.12 113 pAAFJ01000010_00060 - 248 0.14 13.5 0.0 2 2 0.00013 0.33 12.3 0.0 4 35 133 164 129 217 0.74 Protein of unknown function, DUF393 SH3_3 PF08239.11 55 pAAFJ01000010_00061 - 303 6.2e-06 26.4 0.0 1 1 2.3e-09 1.4e-05 25.3 0.0 3 50 255 296 253 300 0.90 Bacterial SH3 domain TraV PF09676.10 132 pAAFJ01000010_00061 - 303 0.00078 20.4 1.2 1 2 1.3e-07 0.00078 20.4 1.2 1 61 27 86 27 107 0.68 Type IV conjugative transfer system lipoprotein (TraV) TraV PF09676.10 132 pAAFJ01000010_00061 - 303 0.00078 20.4 1.2 2 2 1.5 9.1e+03 -2.4 9.4 20 61 143 176 116 246 0.61 Type IV conjugative transfer system lipoprotein (TraV) DUF3410 PF11890.8 81 pAAFJ01000010_00061 - 303 0.083 12.7 0.0 1 1 3.6e-05 0.21 11.4 0.0 25 45 43 63 30 76 0.82 Domain of unknown function (DUF3410) SH3_3 PF08239.11 55 pAAFJ01000010_00062 - 160 0.00054 20.2 0.1 1 1 1.6e-07 0.00093 19.4 0.1 4 39 106 143 103 152 0.84 Bacterial SH3 domain PBP_dimer PF03717.15 180 pAAFJ01000010_00062 - 160 0.027 14.8 0.7 1 1 5.9e-06 0.035 14.4 0.7 42 126 34 124 13 143 0.80 Penicillin-binding Protein dimerisation domain Closter_coat PF01785.17 189 pAAFJ01000010_00062 - 160 0.064 12.5 0.2 1 1 1.5e-05 0.088 12.1 0.2 12 99 22 113 18 115 0.84 Closterovirus coat protein TraC_F_IV PF11130.8 238 pAAFJ01000010_00064 - 837 5.7e-32 111.2 0.0 1 2 1.2e-34 2.1e-31 109.4 0.0 2 223 37 246 36 258 0.94 F pilus assembly Type-IV secretion system for plasmid transfer TraC_F_IV PF11130.8 238 pAAFJ01000010_00064 - 837 5.7e-32 111.2 0.0 2 2 1.2 2.2e+03 -2.0 0.0 66 136 744 811 738 832 0.64 F pilus assembly Type-IV secretion system for plasmid transfer AAA_10 PF12846.7 362 pAAFJ01000010_00064 - 837 1.6e-10 40.5 0.2 1 1 5.2e-13 9.3e-10 38.0 0.2 19 292 457 722 446 772 0.73 AAA-like domain TrwB_AAD_bind PF10412.9 386 pAAFJ01000010_00064 - 837 5.1e-08 32.2 0.0 1 2 2.5e-06 0.0045 15.9 0.0 2 127 446 573 445 605 0.75 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pAAFJ01000010_00064 - 837 5.1e-08 32.2 0.0 2 2 9.7e-06 0.017 14.0 0.0 226 288 652 719 640 796 0.68 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 137 pAAFJ01000010_00064 - 837 0.0013 19.1 0.4 1 3 5.9 1.1e+04 -3.4 0.0 110 136 83 107 78 108 0.77 AAA domain AAA_22 PF13401.6 137 pAAFJ01000010_00064 - 837 0.0013 19.1 0.4 2 3 0.0032 5.8 7.2 0.0 6 26 460 480 456 586 0.84 AAA domain AAA_22 PF13401.6 137 pAAFJ01000010_00064 - 837 0.0013 19.1 0.4 3 3 0.0013 2.3 8.5 0.0 86 128 661 709 593 715 0.80 AAA domain ResIII PF04851.15 171 pAAFJ01000010_00064 - 837 0.0024 17.9 2.1 1 2 1.4 2.6e+03 -1.7 0.1 63 85 123 149 121 190 0.62 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pAAFJ01000010_00064 - 837 0.0024 17.9 2.1 2 2 3.2e-05 0.057 13.4 0.2 20 151 455 689 442 706 0.57 Type III restriction enzyme, res subunit CbiA PF01656.23 128 pAAFJ01000010_00064 - 837 0.0056 16.7 0.0 1 1 8.4e-06 0.015 15.3 0.0 7 104 467 574 464 597 0.77 CobQ/CobB/MinD/ParA nucleotide binding domain Zot PF05707.12 194 pAAFJ01000010_00064 - 837 0.014 15.1 0.0 1 2 3.5 6.3e+03 -3.4 0.0 65 99 107 144 78 155 0.65 Zonular occludens toxin (Zot) Zot PF05707.12 194 pAAFJ01000010_00064 - 837 0.014 15.1 0.0 2 2 2.2e-05 0.039 13.6 0.0 84 131 673 717 657 745 0.87 Zonular occludens toxin (Zot) TraG-D_C PF12696.7 126 pAAFJ01000010_00064 - 837 0.017 15.1 0.0 1 1 2.9e-05 0.052 13.5 0.0 5 69 674 746 670 787 0.77 TraM recognition site of TraD and TraG RsgA_GTPase PF03193.16 167 pAAFJ01000010_00064 - 837 0.056 13.3 0.0 1 1 7.2e-05 0.13 12.2 0.0 67 122 427 482 410 491 0.84 RsgA GTPase DUF1639 PF07797.14 50 pAAFJ01000010_00064 - 837 0.073 13.1 0.1 1 2 0.0026 4.7 7.3 0.0 11 32 286 306 283 316 0.78 Protein of unknown function (DUF1639) DUF1639 PF07797.14 50 pAAFJ01000010_00064 - 837 0.073 13.1 0.1 2 2 0.065 1.2e+02 2.8 0.0 13 36 546 570 543 572 0.78 Protein of unknown function (DUF1639) TrbI_Ftype PF09677.10 106 pAAFJ01000010_00065 - 109 0.028 14.7 0.0 1 1 1.7e-06 0.031 14.6 0.0 13 99 15 104 4 109 0.77 Type-F conjugative transfer system protein (TrbI_Ftype) Peptidase_S26 PF10502.9 138 pAAFJ01000010_00066 - 168 1.6e-15 57.1 0.0 1 1 2.5e-19 2.2e-15 56.6 0.0 2 133 40 166 39 167 0.96 Signal peptidase, peptidase S26 PRA-CH PF01502.18 74 pAAFJ01000010_00066 - 168 0.14 12.0 0.0 1 1 3.5e-05 0.31 10.9 0.0 10 44 59 94 52 118 0.80 Phosphoribosyl-AMP cyclohydrolase TraH PF06122.11 361 pAAFJ01000010_00067 - 468 5.3e-64 216.8 0.3 1 2 5.9e-68 5.3e-64 216.8 0.3 2 360 22 384 21 385 0.86 Conjugative relaxosome accessory transposon protein TraH PF06122.11 361 pAAFJ01000010_00067 - 468 5.3e-64 216.8 0.3 2 2 0.16 1.4e+03 -1.8 0.4 156 206 391 448 388 460 0.49 Conjugative relaxosome accessory transposon protein ArfGap PF01412.18 117 pAAFJ01000010_00067 - 468 0.37 10.9 1.7 1 2 5.1e-05 0.46 10.6 0.1 24 71 107 164 103 197 0.75 Putative GTPase activating protein for Arf ArfGap PF01412.18 117 pAAFJ01000010_00067 - 468 0.37 10.9 1.7 2 2 0.39 3.5e+03 -1.9 0.3 44 75 416 448 398 456 0.72 Putative GTPase activating protein for Arf SAYSvFN PF10260.9 70 pAAFJ01000010_00068 - 394 0.046 13.6 0.2 1 1 1.3e-05 0.12 12.3 0.2 37 60 233 256 226 265 0.78 Uncharacterized conserved domain (SAYSvFN) Ribosomal_L6e PF01159.19 111 pAAFJ01000010_00068 - 394 0.84 10.2 6.1 1 1 0.00019 1.7 9.2 5.5 31 95 219 291 209 306 0.75 Ribosomal protein L6e TraN PF06986.11 240 pAAFJ01000010_00069 - 722 3.3e-26 92.5 26.5 1 2 0.25 1.5e+03 -1.3 0.3 64 127 243 310 219 332 0.55 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 pAAFJ01000010_00069 - 722 3.3e-26 92.5 26.5 2 2 1.5e-28 9.2e-25 87.7 20.4 56 239 498 669 476 670 0.70 Type-1V conjugative transfer system mating pair stabilisation Lectin_C PF00059.21 108 pAAFJ01000010_00069 - 722 1.8e-05 25.4 0.0 1 2 3.1e-09 1.8e-05 25.4 0.0 2 58 59 114 58 146 0.89 Lectin C-type domain Lectin_C PF00059.21 108 pAAFJ01000010_00069 - 722 1.8e-05 25.4 0.0 2 2 3 1.8e+04 -4.5 1.9 77 105 604 635 592 637 0.61 Lectin C-type domain Xol-1_GHMP-like PF09109.10 189 pAAFJ01000010_00069 - 722 0.035 14.0 0.0 1 1 1.2e-05 0.073 12.9 0.0 91 143 250 310 233 338 0.77 Switch protein XOL-1, GHMP-like TraF PF13728.6 224 pAAFJ01000010_00070 - 250 3.2e-18 66.4 7.8 1 1 7.8e-22 4.7e-18 65.8 7.8 1 171 26 193 26 237 0.84 F plasmid transfer operon protein PUA_2 PF14306.6 159 pAAFJ01000010_00070 - 250 0.015 15.0 0.3 1 1 4.7e-06 0.028 14.1 0.3 74 139 52 120 29 149 0.79 PUA-like domain DUF2369 PF10179.9 95 pAAFJ01000010_00070 - 250 0.18 12.2 2.7 1 2 0.048 2.9e+02 1.9 0.1 44 71 22 64 11 85 0.56 Uncharacterised conserved protein (DUF2369) DUF2369 PF10179.9 95 pAAFJ01000010_00070 - 250 0.18 12.2 2.7 2 2 0.00013 0.79 10.1 0.3 19 70 104 164 84 179 0.85 Uncharacterised conserved protein (DUF2369) TraG_N PF07916.11 467 pAAFJ01000010_00071 - 886 3.7e-55 187.6 16.8 1 2 2.1e-59 3.7e-55 187.6 16.8 1 466 24 476 24 477 0.90 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pAAFJ01000010_00071 - 886 3.7e-55 187.6 16.8 2 2 0.28 4.9e+03 -4.0 2.6 221 295 666 739 629 770 0.50 TraG-like protein, N-terminal region TIM21 PF08294.11 145 pAAFJ01000010_00072 - 203 2.7 7.9 3.9 1 3 0.0013 7.5 6.4 0.4 6 44 25 63 21 69 0.89 TIM21 TIM21 PF08294.11 145 pAAFJ01000010_00072 - 203 2.7 7.9 3.9 2 3 0.18 1.1e+03 -0.6 0.1 5 31 61 88 58 92 0.68 TIM21 TIM21 PF08294.11 145 pAAFJ01000010_00072 - 203 2.7 7.9 3.9 3 3 0.031 1.8e+02 1.9 0.0 17 42 148 173 134 186 0.77 TIM21 YwiC PF14256.6 126 pAAFJ01000010_00072 - 203 2.9 8.2 13.6 1 3 0.12 7.1e+02 0.5 4.2 33 81 8 56 2 71 0.60 YwiC-like protein YwiC PF14256.6 126 pAAFJ01000010_00072 - 203 2.9 8.2 13.6 2 3 2.4e-05 0.14 12.5 1.5 62 126 62 126 53 126 0.87 YwiC-like protein YwiC PF14256.6 126 pAAFJ01000010_00072 - 203 2.9 8.2 13.6 3 3 0.16 9.6e+02 0.1 0.0 33 58 149 176 128 184 0.65 YwiC-like protein T_cell_tran_alt PF15128.6 92 pAAFJ01000010_00072 - 203 3.6 7.4 10.0 1 3 0.3 1.8e+03 -1.2 0.1 23 45 24 48 15 54 0.66 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pAAFJ01000010_00072 - 203 3.6 7.4 10.0 2 3 0.00012 0.69 9.7 2.2 18 45 52 79 36 90 0.80 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pAAFJ01000010_00072 - 203 3.6 7.4 10.0 3 3 0.03 1.8e+02 2.0 0.5 29 49 112 132 85 143 0.77 T-cell leukemia translocation-altered Wzy_C PF04932.15 155 pAAFJ01000010_00073 - 101 0.086 12.5 0.1 1 1 1.1e-05 0.096 12.3 0.1 41 80 9 82 3 100 0.77 O-Antigen ligase DUF4713 PF15831.5 56 pAAFJ01000010_00073 - 101 0.17 12.3 3.6 1 2 2.1e-05 0.18 12.2 2.2 25 49 2 26 1 36 0.84 Domain of unknown function (DUF4713) DUF4713 PF15831.5 56 pAAFJ01000010_00073 - 101 0.17 12.3 3.6 2 2 0.4 3.6e+03 -1.5 0.0 14 27 67 80 62 92 0.75 Domain of unknown function (DUF4713) PFO_beta_C PF12367.8 66 pAAFJ01000010_00075 - 285 0.064 13.4 1.6 1 2 1e-05 0.093 12.9 0.2 9 62 126 184 123 188 0.82 Pyruvate ferredoxin oxidoreductase beta subunit C terminal PFO_beta_C PF12367.8 66 pAAFJ01000010_00075 - 285 0.064 13.4 1.6 2 2 0.52 4.6e+03 -2.2 0.1 46 57 253 264 242 269 0.81 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Phage_Treg PF04761.12 57 pAAFJ01000010_00075 - 285 0.085 13.0 1.7 1 3 1 9.2e+03 -3.2 0.0 41 54 44 57 42 58 0.68 Lactococcus bacteriophage putative transcription regulator Phage_Treg PF04761.12 57 pAAFJ01000010_00075 - 285 0.085 13.0 1.7 2 3 0.17 1.5e+03 -0.7 0.1 18 26 126 134 111 146 0.70 Lactococcus bacteriophage putative transcription regulator Phage_Treg PF04761.12 57 pAAFJ01000010_00075 - 285 0.085 13.0 1.7 3 3 3.7e-05 0.33 11.1 0.0 8 48 165 200 160 208 0.77 Lactococcus bacteriophage putative transcription regulator AAA_25 PF13481.6 194 pAAFJ01000010_00076 - 237 1.7e-18 66.9 0.0 1 1 8.6e-22 2.2e-18 66.5 0.0 31 193 28 183 9 184 0.86 AAA domain PhoH PF02562.16 205 pAAFJ01000010_00076 - 237 0.00097 18.6 0.0 1 1 6.8e-07 0.0017 17.8 0.0 18 52 29 63 12 66 0.86 PhoH-like protein DnaB_C PF03796.15 255 pAAFJ01000010_00076 - 237 0.0021 17.5 0.0 1 1 1.1e-06 0.0027 17.1 0.0 15 109 26 116 15 157 0.77 DnaB-like helicase C terminal domain ATPase PF06745.13 231 pAAFJ01000010_00076 - 237 0.041 13.2 0.0 1 1 1.9e-05 0.049 13.0 0.0 16 76 27 88 19 215 0.67 KaiC IstB_IS21 PF01695.17 178 pAAFJ01000010_00076 - 237 0.045 13.5 0.0 1 2 5.1e-05 0.13 12.0 0.0 30 79 11 64 3 93 0.73 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pAAFJ01000010_00076 - 237 0.045 13.5 0.0 2 2 1.2 3e+03 -2.2 0.0 101 117 125 141 117 169 0.63 IstB-like ATP binding protein NACHT PF05729.12 166 pAAFJ01000010_00076 - 237 0.17 11.8 0.0 1 2 0.00017 0.45 10.4 0.0 9 74 39 98 32 181 0.77 NACHT domain NACHT PF05729.12 166 pAAFJ01000010_00076 - 237 0.17 11.8 0.0 2 2 0.59 1.5e+03 -1.1 0.0 18 44 156 181 153 192 0.79 NACHT domain ResIII PF04851.15 171 pAAFJ01000010_00076 - 237 0.23 11.4 2.5 1 1 0.00047 1.2 9.1 2.4 22 66 28 81 5 179 0.73 Type III restriction enzyme, res subunit HTH_3 PF01381.22 55 pAAFJ01000010_00077 - 117 1.2e-06 28.5 0.0 1 1 5.2e-10 1.9e-06 27.8 0.0 1 46 10 55 10 60 0.94 Helix-turn-helix HTH_19 PF12844.7 65 pAAFJ01000010_00077 - 117 1.2e-05 25.2 0.7 1 2 4.6e-09 1.7e-05 24.8 0.0 2 63 8 69 7 71 0.90 Helix-turn-helix domain HTH_19 PF12844.7 65 pAAFJ01000010_00077 - 117 1.2e-05 25.2 0.7 2 2 4.3 1.5e+04 -3.9 0.1 3 8 107 112 105 113 0.62 Helix-turn-helix domain TACC_C PF05010.14 201 pAAFJ01000010_00077 - 117 0.013 15.2 0.1 1 1 4.5e-06 0.016 15.0 0.1 13 104 13 114 4 117 0.73 Transforming acidic coiled-coil-containing protein (TACC), C-terminal T3SchapCesA PF11439.8 95 pAAFJ01000010_00077 - 117 0.11 12.7 0.4 1 2 0.28 1e+03 -0.1 0.0 16 60 12 33 4 45 0.53 Type III secretion system filament chaperone CesA T3SchapCesA PF11439.8 95 pAAFJ01000010_00077 - 117 0.11 12.7 0.4 2 2 0.00012 0.43 10.8 0.1 21 56 47 82 40 114 0.80 Type III secretion system filament chaperone CesA HTH_31 PF13560.6 64 pAAFJ01000010_00077 - 117 0.13 12.6 0.0 1 1 6.2e-05 0.22 11.9 0.0 10 46 14 49 10 55 0.83 Helix-turn-helix domain Toprim_3 PF13362.6 95 pAAFJ01000010_00078 - 376 5.2e-09 36.3 0.0 1 1 9.2e-13 8.2e-09 35.7 0.0 3 94 264 365 262 366 0.83 Toprim domain Toprim_4 PF13662.6 89 pAAFJ01000010_00078 - 376 0.017 15.6 0.1 1 1 3.9e-06 0.035 14.6 0.1 2 80 262 336 261 341 0.89 Toprim domain AAA_25 PF13481.6 194 pAAFJ01000010_00079 - 597 1e-15 57.8 0.0 1 1 6.8e-19 2e-15 56.9 0.0 30 193 30 175 18 176 0.85 AAA domain DnaB_C PF03796.15 255 pAAFJ01000010_00079 - 597 0.0004 19.8 0.0 1 2 1.4e-06 0.0041 16.5 0.0 15 109 29 128 21 136 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pAAFJ01000010_00079 - 597 0.0004 19.8 0.0 2 2 0.0086 26 4.0 0.0 111 183 102 176 90 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pAAFJ01000010_00079 - 597 0.0014 18.3 0.0 1 2 6.2e-06 0.018 14.7 0.0 46 87 32 73 19 86 0.87 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pAAFJ01000010_00079 - 597 0.0014 18.3 0.0 2 2 0.18 5.3e+02 0.2 0.0 97 118 109 130 97 169 0.73 IstB-like ATP binding protein ATPase PF06745.13 231 pAAFJ01000010_00079 - 597 0.013 14.8 0.0 1 2 1.6e-05 0.049 13.0 0.0 16 71 30 84 24 214 0.87 KaiC ATPase PF06745.13 231 pAAFJ01000010_00079 - 597 0.013 14.8 0.0 2 2 1 3e+03 -2.7 0.0 137 160 329 352 322 356 0.83 KaiC AAA PF00004.29 132 pAAFJ01000010_00079 - 597 0.07 13.6 0.1 1 2 0.0003 0.91 10.0 0.0 2 105 37 166 36 177 0.64 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pAAFJ01000010_00079 - 597 0.07 13.6 0.1 2 2 0.36 1.1e+03 0.0 0.0 55 74 417 434 380 456 0.77 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pAAFJ01000010_00079 - 597 0.34 11.0 3.4 1 1 0.00088 2.6 8.1 3.4 1 29 35 63 35 540 0.91 CobQ/CobB/MinD/ParA nucleotide binding domain SseC PF04888.12 317 pAAFJ01000010_00080 - 136 0.0012 18.6 1.4 1 2 3.3e-07 0.0012 18.6 1.4 27 77 8 57 6 60 0.94 Secretion system effector C (SseC) like family SseC PF04888.12 317 pAAFJ01000010_00080 - 136 0.0012 18.6 1.4 2 2 2.1 7.5e+03 -3.8 4.1 58 70 95 107 93 110 0.75 Secretion system effector C (SseC) like family Leu_Phe_trans PF03588.14 169 pAAFJ01000010_00080 - 136 0.034 13.7 0.1 1 1 1.3e-05 0.048 13.2 0.1 76 120 5 48 1 54 0.91 Leucyl/phenylalanyl-tRNA protein transferase T2SSF PF00482.23 125 pAAFJ01000010_00080 - 136 0.18 11.8 0.1 1 2 5e-05 0.18 11.8 0.1 85 123 17 55 13 57 0.88 Type II secretion system (T2SS), protein F T2SSF PF00482.23 125 pAAFJ01000010_00080 - 136 0.18 11.8 0.1 2 2 0.27 9.9e+02 -0.3 1.5 106 121 99 114 86 116 0.56 Type II secretion system (T2SS), protein F DUF3185 PF11381.8 59 pAAFJ01000010_00080 - 136 0.2 11.7 9.2 1 3 0.0004 1.4 9.0 0.0 37 57 26 46 9 56 0.86 Protein of unknown function (DUF3185) DUF3185 PF11381.8 59 pAAFJ01000010_00080 - 136 0.2 11.7 9.2 2 3 0.077 2.8e+02 1.6 1.2 1 10 98 107 98 112 0.83 Protein of unknown function (DUF3185) DUF3185 PF11381.8 59 pAAFJ01000010_00080 - 136 0.2 11.7 9.2 3 3 0.011 40 4.3 1.1 8 19 123 134 121 136 0.89 Protein of unknown function (DUF3185) DUF2207 PF09972.9 492 pAAFJ01000010_00080 - 136 5.6 5.6 16.6 1 2 2.1e-05 0.074 11.8 0.8 360 418 7 69 1 87 0.43 Predicted membrane protein (DUF2207) DUF2207 PF09972.9 492 pAAFJ01000010_00080 - 136 5.6 5.6 16.6 2 2 0.13 4.7e+02 -0.7 9.2 383 420 93 130 73 135 0.50 Predicted membrane protein (DUF2207) Resolvase PF00239.21 146 pAAFJ01000010_00081 - 205 9.9e-36 123.0 0.2 1 1 2.4e-39 1.4e-35 122.5 0.2 2 145 3 144 2 145 0.94 Resolvase, N terminal domain Mga PF05043.13 87 pAAFJ01000010_00081 - 205 0.012 16.1 2.2 1 2 2.5e-05 0.15 12.7 0.6 16 65 17 66 6 75 0.86 Mga helix-turn-helix domain Mga PF05043.13 87 pAAFJ01000010_00081 - 205 0.012 16.1 2.2 2 2 0.051 3e+02 2.1 0.0 43 83 152 191 150 194 0.82 Mga helix-turn-helix domain DUF2790 PF10976.8 78 pAAFJ01000010_00081 - 205 0.14 12.2 0.1 1 1 4.1e-05 0.24 11.4 0.1 12 48 10 45 1 49 0.76 Protein of unknown function (DUF2790) TrbC PF04956.13 99 pAAFJ01000010_00082 - 87 4.8e-15 55.6 8.1 1 1 3.1e-19 5.6e-15 55.4 8.1 19 99 5 85 2 85 0.95 TrbC/VIRB2 family CagE_TrbE_VirB PF03135.14 206 pAAFJ01000010_00083 - 923 2.5e-43 148.6 0.5 1 1 6.9e-47 6.2e-43 147.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pAAFJ01000010_00083 - 923 1.2e-19 70.3 2.0 1 1 2.4e-23 2.1e-19 69.5 2.0 3 83 4 84 2 85 0.95 Type IV secretory pathway, VirB3-like protein Phage_pRha PF09669.10 88 pAAFJ01000010_00084 - 206 2.7e-29 101.5 0.0 1 1 2.5e-33 4.5e-29 100.8 0.0 2 88 26 124 25 124 0.89 Phage regulatory protein Rha (Phage_pRha) T4SS PF07996.11 197 pAAFJ01000010_00085 - 245 2.3e-23 83.6 16.9 1 1 1.1e-26 2.8e-23 83.4 16.9 1 195 21 225 21 227 0.91 Type IV secretion system proteins CHASE4 PF05228.13 137 pAAFJ01000010_00085 - 245 0.05 13.8 5.7 1 3 0.0091 23 5.2 0.6 4 36 36 68 35 71 0.89 CHASE4 domain CHASE4 PF05228.13 137 pAAFJ01000010_00085 - 245 0.05 13.8 5.7 2 3 0.0004 1 9.6 0.2 2 58 75 138 74 175 0.79 CHASE4 domain CHASE4 PF05228.13 137 pAAFJ01000010_00085 - 245 0.05 13.8 5.7 3 3 0.37 9.4e+02 -0.0 0.0 92 122 147 178 138 192 0.86 CHASE4 domain KMP11 PF03037.16 90 pAAFJ01000010_00085 - 245 0.074 13.8 2.3 1 4 0.00012 0.31 11.8 0.0 8 54 18 64 12 92 0.85 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 pAAFJ01000010_00085 - 245 0.074 13.8 2.3 2 4 0.74 1.9e+03 -0.3 0.1 24 49 100 123 81 145 0.57 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 pAAFJ01000010_00085 - 245 0.074 13.8 2.3 3 4 0.95 2.4e+03 -0.6 0.2 51 51 167 167 115 209 0.59 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 pAAFJ01000010_00085 - 245 0.074 13.8 2.3 4 4 1 2.6e+03 -0.7 0.2 12 12 201 201 156 238 0.59 Kinetoplastid membrane protein 11 AChE_tetra PF08674.10 37 pAAFJ01000010_00085 - 245 0.099 12.4 1.2 1 2 0.00019 0.5 10.1 0.1 6 29 43 66 41 72 0.92 Acetylcholinesterase tetramerisation domain AChE_tetra PF08674.10 37 pAAFJ01000010_00085 - 245 0.099 12.4 1.2 2 2 0.19 4.9e+02 0.5 0.1 15 35 123 143 121 145 0.88 Acetylcholinesterase tetramerisation domain zf-RING_6 PF14835.6 65 pAAFJ01000010_00085 - 245 0.12 12.2 0.1 1 2 0.00024 0.61 10.0 0.0 35 53 14 32 7 41 0.83 zf-RING of BARD1-type protein zf-RING_6 PF14835.6 65 pAAFJ01000010_00085 - 245 0.12 12.2 0.1 2 2 0.69 1.8e+03 -1.1 0.0 9 24 130 145 124 149 0.80 zf-RING of BARD1-type protein Med8 PF10232.9 232 pAAFJ01000010_00085 - 245 0.22 11.1 9.0 1 2 0.41 1.1e+03 -1.0 0.2 139 159 46 66 24 101 0.52 Mediator of RNA polymerase II transcription complex subunit 8 Med8 PF10232.9 232 pAAFJ01000010_00085 - 245 0.22 11.1 9.0 2 2 8.5e-06 0.022 14.4 3.9 123 205 146 228 143 244 0.81 Mediator of RNA polymerase II transcription complex subunit 8 PCRF PF03462.18 193 pAAFJ01000010_00085 - 245 0.25 11.2 11.7 1 2 0.001 2.7 7.8 0.4 12 82 29 99 22 123 0.54 PCRF domain PCRF PF03462.18 193 pAAFJ01000010_00085 - 245 0.25 11.2 11.7 2 2 0.0015 3.9 7.3 5.3 20 91 153 231 136 239 0.55 PCRF domain TrbL PF04610.14 215 pAAFJ01000010_00086 - 331 5.9e-33 114.4 25.5 1 1 1.8e-36 8.1e-33 114.0 25.5 1 212 40 245 40 279 0.91 TrbL/VirB6 plasmid conjugal transfer protein DUF2070 PF09843.9 564 pAAFJ01000010_00086 - 331 0.31 9.3 16.7 1 1 0.00011 0.47 8.7 16.7 20 125 135 248 117 263 0.79 Predicted membrane protein (DUF2070) AIM3 PF17096.5 88 pAAFJ01000010_00086 - 331 5.4 8.0 7.0 1 1 0.0021 9.6 7.2 7.0 7 35 281 309 278 312 0.92 Altered inheritance of mitochondria protein 3 DUF412 PF04217.13 141 pAAFJ01000010_00086 - 331 6.5 6.7 10.8 1 3 0.021 95 2.9 0.0 60 90 30 60 12 71 0.78 Protein of unknown function, DUF412 DUF412 PF04217.13 141 pAAFJ01000010_00086 - 331 6.5 6.7 10.8 2 3 0.0045 20 5.1 6.7 38 101 137 197 118 205 0.78 Protein of unknown function, DUF412 DUF412 PF04217.13 141 pAAFJ01000010_00086 - 331 6.5 6.7 10.8 3 3 1.2 5.5e+03 -2.8 0.0 59 79 227 251 204 252 0.61 Protein of unknown function, DUF412 VirB8 PF04335.13 214 pAAFJ01000010_00089 - 219 8.4e-50 169.6 0.1 1 1 1.1e-53 1e-49 169.3 0.1 5 214 10 216 7 216 0.92 VirB8 protein Wzz PF02706.15 92 pAAFJ01000010_00089 - 219 2.4 8.5 6.7 1 2 0.00031 2.8 8.3 3.2 8 51 17 60 11 124 0.63 Chain length determinant protein Wzz PF02706.15 92 pAAFJ01000010_00089 - 219 2.4 8.5 6.7 2 2 0.085 7.6e+02 0.5 0.1 42 64 159 186 158 203 0.62 Chain length determinant protein CagX PF03524.15 211 pAAFJ01000010_00090 - 316 2.3e-53 181.1 0.8 1 1 2.5e-57 4.6e-53 180.1 0.8 2 211 29 270 28 270 0.92 Conjugal transfer protein TrbI PF03743.14 187 pAAFJ01000010_00091 - 382 1.3e-46 158.8 0.1 1 2 0.39 3.5e+03 -2.4 0.3 119 154 120 160 111 164 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pAAFJ01000010_00091 - 382 1.3e-46 158.8 0.1 2 2 1.5e-50 1.3e-46 158.8 0.1 1 187 191 372 191 372 0.98 Bacterial conjugation TrbI-like protein DUF5345 PF17280.2 77 pAAFJ01000010_00091 - 382 0.17 11.8 0.2 1 1 3.8e-05 0.34 10.9 0.2 31 61 12 42 5 44 0.90 Family of unknown function (DUF5345) MORN_2 PF07661.13 22 pAAFJ01000010_00092 - 194 0.39 11.1 2.9 1 2 0.051 4.5e+02 1.7 0.1 8 22 138 152 134 152 0.81 MORN repeat variant MORN_2 PF07661.13 22 pAAFJ01000010_00092 - 194 0.39 11.1 2.9 2 2 0.00031 2.8 8.4 0.6 5 17 155 167 154 169 0.89 MORN repeat variant Ribosomal_S13 PF00416.22 128 pAAFJ01000010_00092 - 194 0.83 10.1 4.2 1 2 0.002 17 5.8 0.1 47 91 22 66 8 83 0.78 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 pAAFJ01000010_00092 - 194 0.83 10.1 4.2 2 2 0.0036 32 4.9 1.4 37 72 155 190 146 194 0.80 Ribosomal protein S13/S18 T2SSE PF00437.20 273 pAAFJ01000010_00093 - 329 5.1e-54 183.2 0.0 1 1 1.2e-56 6.4e-54 182.8 0.0 6 269 14 311 9 314 0.94 Type II/IV secretion system protein AAA_22 PF13401.6 137 pAAFJ01000010_00093 - 329 4.9e-05 23.6 0.0 1 1 1.8e-07 9.4e-05 22.7 0.0 7 57 162 222 159 251 0.82 AAA domain ABC_tran PF00005.27 137 pAAFJ01000010_00093 - 329 0.00012 22.6 0.0 1 1 5.5e-07 0.00029 21.4 0.0 8 51 157 201 150 229 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pAAFJ01000010_00093 - 329 0.00021 20.7 0.0 1 1 6.5e-07 0.00034 20.0 0.0 28 60 146 181 125 183 0.79 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pAAFJ01000010_00093 - 329 0.00062 19.3 0.0 1 1 2e-06 0.0011 18.6 0.0 19 58 146 185 130 196 0.85 P-loop containing dynein motor region AAA_23 PF13476.6 200 pAAFJ01000010_00093 - 329 0.0028 18.2 1.3 1 2 4.3 2.3e+03 -1.1 0.2 154 156 124 126 42 151 0.51 AAA domain AAA_23 PF13476.6 200 pAAFJ01000010_00093 - 329 0.0028 18.2 1.3 2 2 5.3e-06 0.0028 18.2 1.3 5 38 147 179 145 182 0.84 AAA domain TsaE PF02367.17 125 pAAFJ01000010_00093 - 329 0.003 17.5 0.0 1 1 1.2e-05 0.0064 16.5 0.0 11 45 150 186 142 194 0.77 Threonylcarbamoyl adenosine biosynthesis protein TsaE Pox_A32 PF04665.12 242 pAAFJ01000010_00093 - 329 0.003 17.0 0.0 1 1 9.2e-06 0.0048 16.4 0.0 15 36 162 183 145 209 0.85 Poxvirus A32 protein AAA_15 PF13175.6 369 pAAFJ01000010_00093 - 329 0.0035 17.1 2.5 1 2 0.21 1.1e+02 2.3 1.2 184 217 74 139 2 147 0.50 AAA ATPase domain AAA_15 PF13175.6 369 pAAFJ01000010_00093 - 329 0.0035 17.1 2.5 2 2 6.7e-06 0.0035 17.1 2.5 9 54 147 191 145 224 0.78 AAA ATPase domain AAA_24 PF13479.6 197 pAAFJ01000010_00093 - 329 0.0041 16.9 0.0 1 1 1.3e-05 0.0069 16.1 0.0 3 32 161 187 160 229 0.74 AAA domain Septin PF00735.18 281 pAAFJ01000010_00093 - 329 0.0043 16.4 0.0 1 1 1.4e-05 0.0072 15.6 0.0 5 33 161 189 157 209 0.78 Septin RNA_helicase PF00910.22 107 pAAFJ01000010_00093 - 329 0.012 16.0 0.0 1 1 8.1e-05 0.043 14.2 0.0 1 21 163 183 163 223 0.85 RNA helicase ATPase_2 PF01637.18 233 pAAFJ01000010_00093 - 329 0.013 15.4 0.0 1 1 3.9e-05 0.021 14.8 0.0 23 82 163 226 150 281 0.86 ATPase domain predominantly from Archaea NACHT PF05729.12 166 pAAFJ01000010_00093 - 329 0.015 15.2 0.0 1 1 4.8e-05 0.025 14.5 0.0 3 22 163 182 161 185 0.91 NACHT domain AAA_29 PF13555.6 61 pAAFJ01000010_00093 - 329 0.015 15.0 0.0 1 1 6.6e-05 0.035 13.9 0.0 8 39 148 177 139 183 0.74 P-loop containing region of AAA domain DUF87 PF01935.17 227 pAAFJ01000010_00093 - 329 0.015 15.4 1.0 1 2 2.6 1.4e+03 -0.8 0.1 152 187 105 138 37 158 0.65 Helicase HerA, central domain DUF87 PF01935.17 227 pAAFJ01000010_00093 - 329 0.015 15.4 1.0 2 2 5.6e-05 0.03 14.4 0.2 24 45 161 182 138 193 0.82 Helicase HerA, central domain DUF815 PF05673.13 250 pAAFJ01000010_00093 - 329 0.021 14.0 0.0 1 1 5.9e-05 0.031 13.4 0.0 11 76 117 183 107 209 0.79 Protein of unknown function (DUF815) DEAD PF00270.29 176 pAAFJ01000010_00093 - 329 0.021 14.6 0.0 1 1 5.7e-05 0.03 14.1 0.0 11 32 157 177 144 283 0.83 DEAD/DEAH box helicase Mg_chelatase PF01078.21 207 pAAFJ01000010_00093 - 329 0.023 14.1 0.0 1 2 2 1.1e+03 -1.2 0.0 40 59 84 103 81 125 0.82 Magnesium chelatase, subunit ChlI Mg_chelatase PF01078.21 207 pAAFJ01000010_00093 - 329 0.023 14.1 0.0 2 2 0.0002 0.1 11.9 0.0 7 49 145 187 139 227 0.82 Magnesium chelatase, subunit ChlI ATP_bind_1 PF03029.17 241 pAAFJ01000010_00093 - 329 0.027 14.3 0.0 1 1 9.4e-05 0.049 13.4 0.0 1 23 165 187 165 193 0.86 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 167 pAAFJ01000010_00093 - 329 0.045 13.7 0.0 1 1 0.00014 0.072 13.0 0.0 64 121 127 182 110 199 0.67 RsgA GTPase TrwB_AAD_bind PF10412.9 386 pAAFJ01000010_00093 - 329 0.046 12.6 0.0 1 1 0.00015 0.079 11.8 0.0 17 45 162 190 156 221 0.78 Type IV secretion-system coupling protein DNA-binding domain Dynamin_N PF00350.23 168 pAAFJ01000010_00093 - 329 0.051 13.6 0.0 1 2 1.2 6.2e+02 0.3 0.0 21 53 84 115 25 156 0.64 Dynamin family Dynamin_N PF00350.23 168 pAAFJ01000010_00093 - 329 0.051 13.6 0.0 2 2 0.00075 0.4 10.7 0.0 1 32 163 192 163 221 0.88 Dynamin family ResIII PF04851.15 171 pAAFJ01000010_00093 - 329 0.055 13.5 0.1 1 1 0.00023 0.12 12.4 0.1 5 46 142 182 137 224 0.87 Type III restriction enzyme, res subunit SMC_N PF02463.19 220 pAAFJ01000010_00093 - 329 0.063 12.7 0.1 1 1 0.00022 0.12 11.8 0.1 7 44 146 180 137 206 0.76 RecF/RecN/SMC N terminal domain PduV-EutP PF10662.9 143 pAAFJ01000010_00093 - 329 0.07 12.9 0.0 1 2 0.0013 0.7 9.6 0.0 2 22 161 181 160 204 0.88 Ethanolamine utilisation - propanediol utilisation PduV-EutP PF10662.9 143 pAAFJ01000010_00093 - 329 0.07 12.9 0.0 2 2 0.84 4.4e+02 0.5 0.0 76 109 288 321 275 326 0.80 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 130 pAAFJ01000010_00093 - 329 0.073 13.6 0.0 1 1 0.00027 0.14 12.7 0.0 1 93 163 278 163 292 0.56 AAA domain PRK PF00485.18 197 pAAFJ01000010_00093 - 329 0.089 12.5 0.0 1 1 0.00031 0.16 11.7 0.0 2 37 163 197 162 224 0.68 Phosphoribulokinase / Uridine kinase family MobB PF03205.14 133 pAAFJ01000010_00093 - 329 0.09 12.7 0.0 1 1 0.00036 0.19 11.6 0.0 2 22 163 183 162 199 0.88 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.6 131 pAAFJ01000010_00093 - 329 0.091 12.8 0.3 1 1 0.0004 0.21 11.6 0.0 3 50 161 208 160 241 0.76 AAA domain GvpD PF07088.11 484 pAAFJ01000010_00093 - 329 0.093 11.3 0.0 1 1 0.00022 0.12 11.0 0.0 8 43 158 193 150 260 0.74 GvpD gas vesicle protein Sigma54_activat PF00158.26 168 pAAFJ01000010_00093 - 329 0.1 12.3 0.0 1 1 0.00045 0.24 11.1 0.0 13 43 151 181 142 200 0.81 Sigma-54 interaction domain Roc PF08477.13 120 pAAFJ01000010_00093 - 329 0.12 12.6 0.1 1 1 0.00066 0.35 11.1 0.0 2 21 163 182 162 210 0.81 Ras of Complex, Roc, domain of DAPkinase AAA_33 PF13671.6 143 pAAFJ01000010_00093 - 329 0.13 12.5 0.0 1 1 0.00039 0.21 11.8 0.0 2 20 163 181 163 240 0.90 AAA domain YscJ_FliF PF01514.17 194 pAAFJ01000010_00094 - 240 0.019 14.7 2.6 1 2 0.00021 0.31 10.7 0.1 26 64 47 85 39 109 0.85 Secretory protein of YscJ/FliF family YscJ_FliF PF01514.17 194 pAAFJ01000010_00094 - 240 0.019 14.7 2.6 2 2 0.03 44 3.6 0.3 155 179 203 227 189 235 0.84 Secretory protein of YscJ/FliF family Njmu-R1 PF15053.6 353 pAAFJ01000010_00094 - 240 0.028 13.5 1.6 1 1 3.4e-05 0.051 12.7 1.6 121 227 3 109 1 128 0.78 Mjmu-R1-like protein family FtsQ PF03799.15 117 pAAFJ01000010_00094 - 240 0.18 12.7 0.8 1 3 5.6 8.4e+03 -2.4 0.0 43 47 37 41 6 67 0.60 Cell division protein FtsQ FtsQ PF03799.15 117 pAAFJ01000010_00094 - 240 0.18 12.7 0.8 2 3 0.0012 1.8 9.4 0.0 58 102 115 158 75 170 0.75 Cell division protein FtsQ FtsQ PF03799.15 117 pAAFJ01000010_00094 - 240 0.18 12.7 0.8 3 3 0.47 7e+02 1.1 0.0 38 63 209 233 184 238 0.72 Cell division protein FtsQ Halogen_Hydrol PF10112.9 191 pAAFJ01000010_00094 - 240 1.1 9.2 6.9 1 2 0.0028 4.3 7.3 0.8 66 98 20 52 3 76 0.81 5-bromo-4-chloroindolyl phosphate hydrolysis protein Halogen_Hydrol PF10112.9 191 pAAFJ01000010_00094 - 240 1.1 9.2 6.9 2 2 0.012 17 5.3 0.7 48 79 196 227 141 233 0.86 5-bromo-4-chloroindolyl phosphate hydrolysis protein Flagellin_N PF00669.20 139 pAAFJ01000010_00094 - 240 2.1 8.5 7.4 1 2 0.0012 1.9 8.6 0.4 52 104 8 57 3 94 0.83 Bacterial flagellin N-terminal helical region Flagellin_N PF00669.20 139 pAAFJ01000010_00094 - 240 2.1 8.5 7.4 2 2 0.076 1.1e+02 2.8 1.7 83 120 188 226 185 233 0.82 Bacterial flagellin N-terminal helical region SlyX PF04102.12 67 pAAFJ01000010_00094 - 240 2.2 9.0 7.3 1 2 0.0031 4.6 7.9 0.8 7 53 5 51 4 64 0.78 SlyX SlyX PF04102.12 67 pAAFJ01000010_00094 - 240 2.2 9.0 7.3 2 2 0.038 57 4.4 0.2 30 50 208 228 201 235 0.77 SlyX DUF1664 PF07889.12 124 pAAFJ01000010_00094 - 240 2.4 8.2 10.7 1 3 0.0026 3.9 7.5 0.7 71 111 6 46 3 54 0.79 Protein of unknown function (DUF1664) DUF1664 PF07889.12 124 pAAFJ01000010_00094 - 240 2.4 8.2 10.7 2 3 1.3 1.9e+03 -1.2 0.1 80 103 65 88 47 94 0.59 Protein of unknown function (DUF1664) DUF1664 PF07889.12 124 pAAFJ01000010_00094 - 240 2.4 8.2 10.7 3 3 0.0072 11 6.1 1.2 48 75 209 236 191 240 0.68 Protein of unknown function (DUF1664) FlaC_arch PF05377.11 55 pAAFJ01000010_00094 - 240 5.7 7.4 10.3 1 3 0.0027 4 7.9 0.5 1 35 9 43 5 47 0.90 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pAAFJ01000010_00094 - 240 5.7 7.4 10.3 2 3 2.8 4.2e+03 -1.8 0.1 19 39 70 90 55 94 0.61 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pAAFJ01000010_00094 - 240 5.7 7.4 10.3 3 3 0.022 33 5.0 0.6 17 39 209 231 198 236 0.75 Flagella accessory protein C (FlaC) HrpB7 PF09486.10 157 pAAFJ01000010_00094 - 240 5.9 7.3 7.8 1 3 0.0011 1.6 9.1 0.6 97 136 5 44 2 54 0.82 Bacterial type III secretion protein (HrpB7) HrpB7 PF09486.10 157 pAAFJ01000010_00094 - 240 5.9 7.3 7.8 2 3 6.9 1e+04 -3.3 0.1 109 115 154 160 143 170 0.40 Bacterial type III secretion protein (HrpB7) HrpB7 PF09486.10 157 pAAFJ01000010_00094 - 240 5.9 7.3 7.8 3 3 0.13 2e+02 2.3 0.2 85 107 208 230 190 235 0.65 Bacterial type III secretion protein (HrpB7) Vac_Fusion PF02346.16 56 pAAFJ01000010_00094 - 240 6 6.6 7.8 1 3 0.00083 1.2 8.8 0.8 3 36 4 37 2 43 0.91 Chordopoxvirus multifunctional envelope protein A27 Vac_Fusion PF02346.16 56 pAAFJ01000010_00094 - 240 6 6.6 7.8 2 3 0.23 3.4e+02 0.9 0.1 25 33 146 154 141 169 0.53 Chordopoxvirus multifunctional envelope protein A27 Vac_Fusion PF02346.16 56 pAAFJ01000010_00094 - 240 6 6.6 7.8 3 3 1.9 2.9e+03 -2.0 0.1 28 28 230 230 206 240 0.51 Chordopoxvirus multifunctional envelope protein A27 FapA PF03961.13 454 pAAFJ01000010_00094 - 240 6.9 5.2 21.5 1 2 7.7e-05 0.11 11.0 9.9 333 412 11 95 2 154 0.82 Flagellar Assembly Protein A FapA PF03961.13 454 pAAFJ01000010_00094 - 240 6.9 5.2 21.5 2 2 0.39 5.8e+02 -1.2 5.5 336 393 190 228 128 240 0.41 Flagellar Assembly Protein A BST2 PF16716.5 91 pAAFJ01000010_00094 - 240 6.9 7.3 17.4 1 3 0.00093 1.4 9.6 3.4 12 73 3 63 1 81 0.81 Bone marrow stromal antigen 2 BST2 PF16716.5 91 pAAFJ01000010_00094 - 240 6.9 7.3 17.4 2 3 4.3 6.5e+03 -2.2 0.1 48 62 152 164 141 171 0.44 Bone marrow stromal antigen 2 BST2 PF16716.5 91 pAAFJ01000010_00094 - 240 6.9 7.3 17.4 3 3 0.009 13 6.4 2.3 54 84 197 227 184 233 0.58 Bone marrow stromal antigen 2 T4SS-DNA_transf PF02534.14 469 pAAFJ01000010_00095 - 606 1.3e-109 367.1 0.0 1 1 3.9e-113 1.8e-109 366.7 0.0 2 461 93 572 82 578 0.86 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pAAFJ01000010_00095 - 606 6.2e-27 94.1 0.0 1 1 2.4e-30 1.1e-26 93.3 0.0 2 125 414 535 413 536 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pAAFJ01000010_00095 - 606 1.4e-18 67.0 0.0 1 2 1.3e-06 0.0058 15.6 0.0 44 127 158 253 132 272 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pAAFJ01000010_00095 - 606 1.4e-18 67.0 0.0 2 2 7.3e-17 3.3e-13 49.3 0.0 158 369 322 538 301 550 0.78 Type IV secretion-system coupling protein DNA-binding domain BRI3BP PF14965.6 180 pAAFJ01000010_00095 - 606 0.22 11.0 2.3 1 2 5.9e-05 0.26 10.8 1.2 72 144 6 77 2 100 0.79 Negative regulator of p53/TP53 BRI3BP PF14965.6 180 pAAFJ01000010_00095 - 606 0.22 11.0 2.3 2 2 1.3 6e+03 -3.4 0.0 8 27 490 509 488 520 0.81 Negative regulator of p53/TP53 Cag12 PF13117.6 97 pAAFJ01000010_00096 - 136 1.1e-16 61.2 0.1 1 1 2.4e-20 1.4e-16 60.7 0.1 6 94 29 115 25 118 0.92 Cag pathogenicity island protein Cag12 LPAM_2 PF13627.6 23 pAAFJ01000010_00096 - 136 0.027 14.3 3.2 1 1 7.4e-06 0.044 13.6 3.2 2 19 7 24 6 24 0.90 Prokaryotic lipoprotein-attachment site DUF5061 PF16587.5 103 pAAFJ01000010_00096 - 136 0.15 12.2 0.1 1 1 3.1e-05 0.19 11.8 0.1 2 34 8 40 7 91 0.82 17 kDa common-antigen outer membrane protein TrbM PF07424.11 156 pAAFJ01000010_00097 - 197 6.3e-39 133.4 1.3 1 1 4.5e-43 8e-39 133.1 1.3 2 148 23 181 22 190 0.87 TrbM Latarcin PF10279.9 81 pAAFJ01000010_00098 - 296 0.016 15.6 1.6 1 1 0.00029 0.66 10.4 1.6 22 76 56 184 14 189 0.78 Latarcin precursor Lipase_GDSL PF00657.22 200 pAAFJ01000010_00098 - 296 0.033 14.2 1.1 1 1 3e-05 0.067 13.2 0.9 48 131 27 170 15 219 0.75 GDSL-like Lipase/Acylhydrolase T3SS_basalb_I PF17001.5 96 pAAFJ01000010_00098 - 296 0.078 13.6 4.2 1 2 0.00077 1.7 9.3 0.5 3 62 20 91 18 107 0.70 Type III secretion basal body protein I, YscI, HrpB, PscI T3SS_basalb_I PF17001.5 96 pAAFJ01000010_00098 - 296 0.078 13.6 4.2 2 2 0.019 44 4.8 0.1 2 43 158 208 157 219 0.55 Type III secretion basal body protein I, YscI, HrpB, PscI Cor1 PF04803.12 132 pAAFJ01000010_00098 - 296 0.15 12.3 22.3 1 3 0.0051 11 6.2 4.9 5 53 3 51 1 86 0.76 Cor1/Xlr/Xmr conserved region Cor1 PF04803.12 132 pAAFJ01000010_00098 - 296 0.15 12.3 22.3 2 3 6.9e-05 0.15 12.2 6.2 45 124 97 179 82 182 0.83 Cor1/Xlr/Xmr conserved region Cor1 PF04803.12 132 pAAFJ01000010_00098 - 296 0.15 12.3 22.3 3 3 0.095 2.1e+02 2.1 0.5 7 40 178 211 172 218 0.61 Cor1/Xlr/Xmr conserved region DUF1451 PF07295.11 147 pAAFJ01000010_00098 - 296 0.25 11.3 8.8 1 3 0.05 1.1e+02 2.8 0.4 35 89 22 76 2 88 0.75 Zinc-ribbon containing domain DUF1451 PF07295.11 147 pAAFJ01000010_00098 - 296 0.25 11.3 8.8 2 3 0.29 6.4e+02 0.3 0.1 9 45 62 96 56 121 0.67 Zinc-ribbon containing domain DUF1451 PF07295.11 147 pAAFJ01000010_00098 - 296 0.25 11.3 8.8 3 3 8.8e-05 0.2 11.7 2.5 6 100 118 205 111 215 0.87 Zinc-ribbon containing domain TipAS PF07739.13 117 pAAFJ01000010_00098 - 296 0.36 11.4 6.4 1 3 0.24 5.3e+02 1.2 0.7 15 44 27 56 13 88 0.57 TipAS antibiotic-recognition domain TipAS PF07739.13 117 pAAFJ01000010_00098 - 296 0.36 11.4 6.4 2 3 0.012 27 5.4 0.1 26 75 89 138 56 149 0.68 TipAS antibiotic-recognition domain TipAS PF07739.13 117 pAAFJ01000010_00098 - 296 0.36 11.4 6.4 3 3 0.004 9 6.9 0.2 19 71 156 208 147 224 0.85 TipAS antibiotic-recognition domain Exonuc_VII_L PF02601.15 304 pAAFJ01000010_00098 - 296 0.37 10.3 10.9 1 2 0.0064 14 5.1 3.2 159 242 15 77 1 119 0.29 Exonuclease VII, large subunit Exonuc_VII_L PF02601.15 304 pAAFJ01000010_00098 - 296 0.37 10.3 10.9 2 2 0.00029 0.65 9.5 2.7 144 240 105 204 96 279 0.65 Exonuclease VII, large subunit OmpH PF03938.14 138 pAAFJ01000010_00098 - 296 2.8 8.3 16.8 1 3 0.0016 3.5 8.0 3.1 23 103 15 108 3 115 0.72 Outer membrane protein (OmpH-like) OmpH PF03938.14 138 pAAFJ01000010_00098 - 296 2.8 8.3 16.8 2 3 0.0017 3.8 7.9 2.6 35 117 137 222 111 233 0.62 Outer membrane protein (OmpH-like) OmpH PF03938.14 138 pAAFJ01000010_00098 - 296 2.8 8.3 16.8 3 3 0.84 1.9e+03 -0.9 0.1 16 32 244 260 232 288 0.54 Outer membrane protein (OmpH-like) Topoisom_bac PF01131.20 413 pAAFJ01000010_00100 - 723 4.4e-96 322.4 2.6 1 1 5.3e-99 5.6e-96 322.1 2.6 3 413 154 591 152 591 0.93 DNA topoisomerase Toprim PF01751.22 103 pAAFJ01000010_00100 - 723 8.4e-12 45.2 0.4 1 2 3.3e-14 3.4e-11 43.3 0.1 1 101 2 134 2 136 0.86 Toprim domain Toprim PF01751.22 103 pAAFJ01000010_00100 - 723 8.4e-12 45.2 0.4 2 2 6.3 6.6e+03 -2.6 0.0 61 77 497 513 465 516 0.67 Toprim domain zf-C4_Topoisom PF01396.19 39 pAAFJ01000010_00100 - 723 1.2e-07 31.3 19.1 1 2 7.7e-07 0.00081 19.1 3.8 2 27 619 645 618 656 0.88 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pAAFJ01000010_00100 - 723 1.2e-07 31.3 19.1 2 2 2.3e-06 0.0024 17.6 7.4 3 37 674 713 672 715 0.85 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pAAFJ01000010_00100 - 723 0.00043 20.5 0.2 1 2 0.0037 3.9 7.8 0.0 18 34 615 631 610 632 0.78 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pAAFJ01000010_00100 - 723 0.00043 20.5 0.2 2 2 0.00065 0.69 10.2 0.0 20 32 671 683 661 685 0.78 zinc-ribbon Zn_ribbon_SprT PF17283.2 38 pAAFJ01000010_00100 - 723 0.014 15.3 1.1 1 2 0.43 4.6e+02 0.8 0.1 7 13 621 627 614 632 0.64 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 pAAFJ01000010_00100 - 723 0.014 15.3 1.1 2 2 0.00011 0.11 12.4 0.2 4 27 672 699 669 704 0.93 SprT-like zinc ribbon domain Toprim_2 PF13155.6 90 pAAFJ01000010_00100 - 723 0.036 14.5 0.3 1 2 0.00075 0.79 10.2 0.1 37 75 91 131 83 152 0.82 Toprim-like Toprim_2 PF13155.6 90 pAAFJ01000010_00100 - 723 0.036 14.5 0.3 2 2 0.43 4.5e+02 1.3 0.0 33 58 488 513 448 516 0.80 Toprim-like HTH_34 PF13601.6 80 pAAFJ01000010_00100 - 723 0.074 13.2 0.5 1 2 0.84 8.9e+02 0.2 0.0 44 62 465 481 456 496 0.68 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pAAFJ01000010_00100 - 723 0.074 13.2 0.5 2 2 0.00073 0.77 10.0 0.1 32 57 524 549 519 558 0.84 Winged helix DNA-binding domain Zn-ribbon_8 PF09723.10 40 pAAFJ01000010_00100 - 723 0.077 13.1 0.7 1 2 0.033 35 4.6 0.0 18 34 609 626 603 632 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pAAFJ01000010_00100 - 723 0.077 13.1 0.7 2 2 0.011 11 6.2 0.1 5 21 672 688 665 693 0.77 Zinc ribbon domain zinc_ribbon_4 PF13717.6 36 pAAFJ01000010_00100 - 723 0.11 12.4 2.3 1 2 0.017 18 5.3 0.2 2 12 618 628 618 629 0.85 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pAAFJ01000010_00100 - 723 0.11 12.4 2.3 2 2 0.01 11 6.1 0.1 4 17 674 687 672 694 0.84 zinc-ribbon domain Toprim_4 PF13662.6 89 pAAFJ01000010_00100 - 723 0.12 12.8 0.1 1 2 0.00075 0.79 10.2 0.0 49 76 89 120 69 132 0.71 Toprim domain Toprim_4 PF13662.6 89 pAAFJ01000010_00100 - 723 0.12 12.8 0.1 2 2 4.7 4.9e+03 -1.9 0.0 29 68 482 513 477 515 0.67 Toprim domain zf-ribbon_3 PF13248.6 26 pAAFJ01000010_00100 - 723 0.18 11.3 1.0 1 2 0.012 12 5.4 0.1 2 11 618 628 617 633 0.74 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pAAFJ01000010_00100 - 723 0.18 11.3 1.0 2 2 0.038 40 3.8 0.1 1 8 671 678 671 687 0.83 zinc-ribbon domain TRAF6_Z2 PF18048.1 27 pAAFJ01000010_00100 - 723 0.44 10.7 3.7 1 3 1.6 1.7e+03 -0.8 0.0 18 25 264 271 262 272 0.85 TNF receptor-associated factor 6 zinc finger 2 TRAF6_Z2 PF18048.1 27 pAAFJ01000010_00100 - 723 0.44 10.7 3.7 2 3 1.9 2e+03 -1.0 0.0 5 10 620 625 618 628 0.81 TNF receptor-associated factor 6 zinc finger 2 TRAF6_Z2 PF18048.1 27 pAAFJ01000010_00100 - 723 0.44 10.7 3.7 3 3 0.0011 1.1 9.4 0.4 5 13 674 682 671 684 0.89 TNF receptor-associated factor 6 zinc finger 2 Zn_Tnp_IS1 PF03811.13 35 pAAFJ01000010_00100 - 723 0.46 10.2 3.3 1 2 0.069 73 3.2 0.2 6 12 619 625 617 627 0.88 InsA N-terminal domain Zn_Tnp_IS1 PF03811.13 35 pAAFJ01000010_00100 - 723 0.46 10.2 3.3 2 2 0.0048 5.1 6.9 0.4 7 33 674 701 672 703 0.89 InsA N-terminal domain zf-HIT PF04438.16 30 pAAFJ01000010_00100 - 723 0.48 10.3 4.2 1 2 0.045 47 4.0 0.3 11 23 616 628 614 643 0.83 HIT zinc finger zf-HIT PF04438.16 30 pAAFJ01000010_00100 - 723 0.48 10.3 4.2 2 2 0.0056 5.9 6.8 0.4 11 20 670 679 667 682 0.86 HIT zinc finger zf_C2H2_10 PF18414.1 26 pAAFJ01000010_00100 - 723 2.6 7.7 7.4 1 2 0.01 11 5.7 1.3 4 10 620 626 618 628 0.85 C2H2 type zinc-finger zf_C2H2_10 PF18414.1 26 pAAFJ01000010_00100 - 723 2.6 7.7 7.4 2 2 0.023 25 4.5 0.5 2 9 672 679 671 681 0.88 C2H2 type zinc-finger PIN_4 PF13638.6 131 pAAFJ01000010_00100 - 723 6 7.2 6.6 1 3 3.2 3.4e+03 -1.7 0.0 28 64 204 241 200 277 0.52 PIN domain PIN_4 PF13638.6 131 pAAFJ01000010_00100 - 723 6 7.2 6.6 2 3 0.00077 0.81 10.0 1.0 60 126 468 554 441 558 0.75 PIN domain PIN_4 PF13638.6 131 pAAFJ01000010_00100 - 723 6 7.2 6.6 3 3 8.5 8.9e+03 -3.1 0.1 79 91 607 619 574 620 0.47 PIN domain zf-H2C2_2 PF13465.6 26 pAAFJ01000010_00100 - 723 8.1 7.1 8.1 1 2 0.064 67 4.2 0.1 9 24 613 628 609 630 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pAAFJ01000010_00100 - 723 8.1 7.1 8.1 2 2 0.012 12 6.5 0.7 11 24 669 682 665 683 0.82 Zinc-finger double domain TetR_C_5 PF08360.11 131 pAAFJ01000010_00102 - 85 0.012 15.8 4.6 1 1 7.2e-07 0.013 15.7 4.6 8 85 6 84 1 85 0.75 QacR-like protein, C-terminal region YopX PF09643.10 131 pAAFJ01000010_00103 - 196 2.1e-13 50.5 2.2 1 1 1.9e-17 3.4e-13 49.8 2.2 46 130 46 140 12 141 0.76 YopX protein YopX PF09643.10 131 pAAFJ01000010_00104 - 141 1.7e-05 24.9 0.1 1 1 2.2e-09 2e-05 24.7 0.1 48 89 54 92 7 126 0.76 YopX protein TAFII28 PF04719.14 86 pAAFJ01000010_00104 - 141 0.072 13.2 0.0 1 2 0.0052 47 4.2 0.0 52 66 73 87 68 106 0.77 hTAFII28-like protein conserved region TAFII28 PF04719.14 86 pAAFJ01000010_00104 - 141 0.072 13.2 0.0 2 2 0.00065 5.9 7.1 0.0 11 36 110 135 104 141 0.87 hTAFII28-like protein conserved region CRISPR_Cas2 PF09827.9 76 pAAFJ01000010_00106 - 140 0.00069 19.7 1.5 1 2 3.7e-07 0.0022 18.1 0.0 5 54 7 67 3 83 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pAAFJ01000010_00106 - 140 0.00069 19.7 1.5 2 2 0.15 8.8e+02 0.2 0.3 41 54 111 124 79 136 0.66 CRISPR associated protein Cas2 RRM_1 PF00076.22 70 pAAFJ01000010_00106 - 140 0.0021 17.8 0.5 1 2 1.4e-06 0.0083 15.9 0.1 6 62 7 68 5 70 0.89 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_1 PF00076.22 70 pAAFJ01000010_00106 - 140 0.0021 17.8 0.5 2 2 0.22 1.3e+03 -0.7 0.0 4 18 104 118 104 132 0.80 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LPD11 PF18824.1 69 pAAFJ01000010_00106 - 140 0.086 12.9 1.8 1 3 0.34 2e+03 -1.1 0.0 28 50 10 32 2 33 0.77 Large polyvalent protein-associated domain 11 LPD11 PF18824.1 69 pAAFJ01000010_00106 - 140 0.086 12.9 1.8 2 3 0.84 5e+03 -2.3 0.0 61 67 57 63 48 74 0.54 Large polyvalent protein-associated domain 11 LPD11 PF18824.1 69 pAAFJ01000010_00106 - 140 0.086 12.9 1.8 3 3 2.9e-05 0.17 12.0 0.4 25 55 102 132 86 137 0.88 Large polyvalent protein-associated domain 11 AAA_31 PF13614.6 177 pAAFJ01000010_00107 - 219 1.6e-11 44.5 4.7 1 1 1.2e-13 1.8e-10 41.1 4.7 2 74 2 85 1 217 0.77 AAA domain MipZ PF09140.11 262 pAAFJ01000010_00107 - 219 3e-11 43.1 1.8 1 2 2.2e-09 3.3e-06 26.6 1.0 2 145 3 133 2 164 0.72 ATPase MipZ MipZ PF09140.11 262 pAAFJ01000010_00107 - 219 3e-11 43.1 1.8 2 2 0.0043 6.4 6.0 0.0 213 258 174 214 132 217 0.88 ATPase MipZ CbiA PF01656.23 128 pAAFJ01000010_00107 - 219 4.3e-09 36.5 0.1 1 1 4.3e-12 6.4e-09 35.9 0.1 5 110 8 171 4 190 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 305 pAAFJ01000010_00107 - 219 0.00013 21.3 0.3 1 2 5.4e-07 0.00081 18.7 0.0 8 46 9 47 1 75 0.87 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 pAAFJ01000010_00107 - 219 0.00013 21.3 0.3 2 2 0.21 3.1e+02 0.3 0.5 139 181 117 159 109 217 0.58 Anion-transporting ATPase VirC1 PF07015.11 231 pAAFJ01000010_00107 - 219 0.0012 18.2 0.1 1 2 0.0012 1.7 7.9 0.0 1 40 1 40 1 58 0.86 VirC1 protein VirC1 PF07015.11 231 pAAFJ01000010_00107 - 219 0.0012 18.2 0.1 2 2 0.00061 0.91 8.8 0.0 87 152 83 149 67 213 0.76 VirC1 protein ABC2_membrane_3 PF12698.7 345 pAAFJ01000010_00107 - 219 0.0018 17.4 0.8 1 1 1.3e-06 0.002 17.3 0.8 21 128 19 138 13 211 0.62 ABC-2 family transporter protein AAA_24 PF13479.6 197 pAAFJ01000010_00107 - 219 0.0038 17.0 1.2 1 2 4.1e-06 0.0061 16.3 0.1 11 73 11 87 9 91 0.75 AAA domain AAA_24 PF13479.6 197 pAAFJ01000010_00107 - 219 0.0038 17.0 1.2 2 2 1.8 2.6e+03 -2.1 0.0 31 58 185 213 158 217 0.59 AAA domain ParA PF10609.9 246 pAAFJ01000010_00107 - 219 0.004 16.6 0.0 1 1 4.8e-06 0.0072 15.8 0.0 6 41 4 39 1 58 0.85 NUBPL iron-transfer P-loop NTPase ATP_bind_1 PF03029.17 241 pAAFJ01000010_00107 - 219 0.019 14.8 0.1 1 2 4.4e-05 0.066 13.0 0.0 6 34 12 40 10 50 0.91 Conserved hypothetical ATP binding protein ATP_bind_1 PF03029.17 241 pAAFJ01000010_00107 - 219 0.019 14.8 0.1 2 2 0.88 1.3e+03 -1.1 0.0 196 196 89 89 40 153 0.53 Conserved hypothetical ATP binding protein DUF2139 PF09910.9 340 pAAFJ01000010_00107 - 219 0.14 11.3 0.0 1 1 0.0003 0.45 9.6 0.0 170 251 51 128 2 138 0.82 Uncharacterized protein conserved in archaea (DUF2139) CBP_BcsQ PF06564.12 234 pAAFJ01000010_00107 - 219 0.14 11.6 0.0 1 2 0.00038 0.57 9.6 0.0 1 39 1 39 1 56 0.88 Cellulose biosynthesis protein BcsQ CBP_BcsQ PF06564.12 234 pAAFJ01000010_00107 - 219 0.14 11.6 0.0 2 2 0.52 7.8e+02 -0.6 0.0 154 176 129 152 98 179 0.69 Cellulose biosynthesis protein BcsQ AAA_14 PF13173.6 131 pAAFJ01000010_00107 - 219 0.25 11.4 7.9 1 3 3.3e-05 0.05 13.6 1.3 13 71 13 86 11 103 0.67 AAA domain AAA_14 PF13173.6 131 pAAFJ01000010_00107 - 219 0.25 11.4 7.9 2 3 1.1 1.7e+03 -1.0 0.1 54 69 128 143 92 172 0.54 AAA domain AAA_14 PF13173.6 131 pAAFJ01000010_00107 - 219 0.25 11.4 7.9 3 3 0.35 5.2e+02 0.6 0.1 20 58 171 213 167 218 0.65 AAA domain SNF2_N PF00176.23 350 pAAFJ01000010_00109 - 1969 3.6e-15 55.6 0.1 1 1 4.3e-18 1.1e-14 53.9 0.1 59 244 978 1229 962 1252 0.81 SNF2 family N-terminal domain Helicase_C PF00271.31 111 pAAFJ01000010_00109 - 1969 1.5e-09 38.2 7.1 1 4 2.1 5.5e+03 -2.3 0.2 7 68 533 593 528 600 0.68 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pAAFJ01000010_00109 - 1969 1.5e-09 38.2 7.1 2 4 0.19 4.8e+02 1.1 0.0 38 71 1029 1062 995 1065 0.73 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pAAFJ01000010_00109 - 1969 1.5e-09 38.2 7.1 3 4 1.1e-12 2.8e-09 37.3 0.0 21 110 1496 1593 1482 1594 0.80 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pAAFJ01000010_00109 - 1969 1.5e-09 38.2 7.1 4 4 2.9 7.3e+03 -2.7 0.2 44 68 1925 1947 1884 1954 0.61 Helicase conserved C-terminal domain ResIII PF04851.15 171 pAAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 1 6 1.5 3.8e+03 -2.3 0.0 62 85 264 291 253 344 0.53 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pAAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 2 6 5.5 1.4e+04 -4.1 0.3 79 119 526 569 493 586 0.60 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pAAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 3 6 0.82 2.1e+03 -1.5 1.8 50 120 856 930 849 950 0.63 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pAAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 4 6 1e-11 2.6e-08 34.1 3.3 3 169 959 1198 957 1200 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pAAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 5 6 2 5e+03 -2.7 1.2 56 114 1686 1730 1620 1803 0.61 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pAAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 6 6 2.8 7e+03 -3.2 1.0 64 74 1911 1921 1876 1964 0.46 Type III restriction enzyme, res subunit Eco57I PF07669.11 106 pAAFJ01000010_00109 - 1969 2.1e-06 28.2 1.2 1 3 1e-08 2.6e-05 24.7 0.1 2 72 281 348 280 383 0.65 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pAAFJ01000010_00109 - 1969 2.1e-06 28.2 1.2 2 3 7 1.8e+04 -4.1 0.0 30 44 761 775 758 777 0.86 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pAAFJ01000010_00109 - 1969 2.1e-06 28.2 1.2 3 3 2.3 6e+03 -2.2 0.0 34 72 902 939 884 960 0.65 Eco57I restriction-modification methylase DEAD PF00270.29 176 pAAFJ01000010_00109 - 1969 0.00053 19.8 2.9 1 3 1.3 3.4e+03 -2.4 0.0 52 81 261 285 246 311 0.72 DEAD/DEAH box helicase DEAD PF00270.29 176 pAAFJ01000010_00109 - 1969 0.00053 19.8 2.9 2 3 2.3e-06 0.006 16.4 1.4 6 150 966 1167 961 1205 0.70 DEAD/DEAH box helicase DEAD PF00270.29 176 pAAFJ01000010_00109 - 1969 0.00053 19.8 2.9 3 3 3.5 9.1e+03 -3.8 0.0 80 110 1525 1560 1509 1573 0.59 DEAD/DEAH box helicase MTS PF05175.14 169 pAAFJ01000010_00109 - 1969 0.0033 17.0 0.0 1 1 5.8e-06 0.015 14.9 0.0 79 138 261 329 218 339 0.69 Methyltransferase small domain Methyltransf_23 PF13489.6 165 pAAFJ01000010_00109 - 1969 0.056 13.3 0.0 1 1 9.8e-05 0.25 11.2 0.0 22 89 221 288 194 345 0.86 Methyltransferase domain Fic PF02661.18 97 pAAFJ01000010_00112 - 156 0.025 15.5 0.0 1 2 1.2 1.1e+04 -2.6 0.0 44 58 11 27 6 46 0.60 Fic/DOC family Fic PF02661.18 97 pAAFJ01000010_00112 - 156 0.025 15.5 0.0 2 2 6.1e-06 0.055 14.4 0.0 2 31 58 90 57 124 0.76 Fic/DOC family Adenyl_cycl_N PF12633.7 199 pAAFJ01000010_00112 - 156 0.086 12.7 0.1 1 1 1.8e-05 0.16 11.8 0.1 105 143 9 47 2 55 0.92 Adenylate cyclase NT domain CRISPR_Cas2 PF09827.9 76 pAAFJ01000010_00114 - 151 1e-05 25.6 2.4 1 2 6.4e-09 1.6e-05 24.9 0.0 5 52 12 76 9 91 0.73 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pAAFJ01000010_00114 - 151 1e-05 25.6 2.4 2 2 0.45 1.1e+03 -0.2 0.7 43 57 124 141 113 148 0.58 CRISPR associated protein Cas2 GIT_CC PF16559.5 66 pAAFJ01000010_00114 - 151 0.014 15.2 5.0 1 1 8.9e-06 0.023 14.6 5.0 10 59 90 139 84 148 0.92 GIT coiled-coil Rho guanine nucleotide exchange factor ABC_tran_Xtn PF12848.7 85 pAAFJ01000010_00114 - 151 0.014 15.4 2.7 1 1 9.3e-06 0.024 14.7 2.7 23 59 109 145 93 151 0.81 ABC transporter DUF5595 PF18077.1 73 pAAFJ01000010_00114 - 151 0.039 14.0 3.6 1 1 3.1e-05 0.08 13.0 3.6 26 72 100 145 95 146 0.90 Domain of unknown function (DUF5595) DUF1722 PF08349.11 117 pAAFJ01000010_00114 - 151 0.047 14.0 2.6 1 3 0.33 8.6e+02 0.2 0.0 40 71 19 50 16 66 0.70 Protein of unknown function (DUF1722) DUF1722 PF08349.11 117 pAAFJ01000010_00114 - 151 0.047 14.0 2.6 2 3 0.013 33 4.8 0.0 55 106 46 97 37 102 0.88 Protein of unknown function (DUF1722) DUF1722 PF08349.11 117 pAAFJ01000010_00114 - 151 0.047 14.0 2.6 3 3 0.0024 6.2 7.1 2.0 35 72 109 146 96 150 0.86 Protein of unknown function (DUF1722) NPBW PF15180.6 116 pAAFJ01000010_00114 - 151 0.22 11.4 0.6 1 1 0.00015 0.38 10.6 0.6 61 94 115 148 100 151 0.74 Neuropeptides B and W EMP24_GP25L PF01105.24 182 pAAFJ01000010_00114 - 151 0.6 10.0 5.3 1 2 0.061 1.6e+02 2.1 0.1 87 156 7 77 1 79 0.62 emp24/gp25L/p24 family/GOLD EMP24_GP25L PF01105.24 182 pAAFJ01000010_00114 - 151 0.6 10.0 5.3 2 2 0.00038 0.97 9.3 1.9 78 129 82 142 81 150 0.68 emp24/gp25L/p24 family/GOLD DUF2600 PF10776.9 328 pAAFJ01000010_00115 - 151 0.0034 16.3 0.5 1 1 4.2e-06 0.0044 15.9 0.5 193 244 62 112 33 126 0.87 Protein of unknown function (DUF2600) DUF2070 PF09843.9 564 pAAFJ01000010_00115 - 151 0.0043 15.4 8.7 1 1 4.6e-06 0.0049 15.2 8.7 67 171 8 141 1 147 0.74 Predicted membrane protein (DUF2070) COX7a PF02238.15 53 pAAFJ01000010_00115 - 151 0.0096 16.3 1.7 1 2 0.00072 0.76 10.2 0.1 14 49 3 38 2 41 0.87 Cytochrome c oxidase subunit VII COX7a PF02238.15 53 pAAFJ01000010_00115 - 151 0.0096 16.3 1.7 2 2 0.04 42 4.6 0.1 27 47 117 137 113 141 0.89 Cytochrome c oxidase subunit VII HlyIII PF03006.20 224 pAAFJ01000010_00115 - 151 0.013 15.3 7.6 1 1 1.4e-05 0.015 15.1 7.6 39 162 13 143 2 151 0.70 Haemolysin-III related DUF1129 PF06570.11 206 pAAFJ01000010_00115 - 151 0.022 14.3 8.0 1 2 0.044 46 3.4 0.1 142 182 4 45 1 52 0.70 Protein of unknown function (DUF1129) DUF1129 PF06570.11 206 pAAFJ01000010_00115 - 151 0.022 14.3 8.0 2 2 2.6e-05 0.027 13.9 3.5 87 172 55 139 42 148 0.77 Protein of unknown function (DUF1129) DUF1772 PF08592.11 137 pAAFJ01000010_00115 - 151 0.027 14.8 3.3 1 1 3.1e-05 0.033 14.5 2.3 26 80 7 69 2 116 0.80 Domain of unknown function (DUF1772) DUF2663 PF10864.8 127 pAAFJ01000010_00115 - 151 0.076 13.4 14.4 1 2 0.00051 0.53 10.7 5.7 9 80 6 78 1 81 0.70 Protein of unknown function (DUF2663) DUF2663 PF10864.8 127 pAAFJ01000010_00115 - 151 0.076 13.4 14.4 2 2 0.0028 3 8.3 1.5 26 78 89 146 80 149 0.54 Protein of unknown function (DUF2663) DUF898 PF05987.13 342 pAAFJ01000010_00115 - 151 0.079 12.0 6.5 1 2 0.00054 0.57 9.2 2.6 174 241 2 69 1 80 0.76 Bacterial protein of unknown function (DUF898) DUF898 PF05987.13 342 pAAFJ01000010_00115 - 151 0.079 12.0 6.5 2 2 0.0096 10 5.1 0.1 196 244 90 138 77 148 0.57 Bacterial protein of unknown function (DUF898) DUF418 PF04235.12 163 pAAFJ01000010_00115 - 151 0.12 12.3 2.2 1 2 0.00023 0.24 11.3 0.7 14 89 10 85 4 87 0.80 Protein of unknown function (DUF418) DUF418 PF04235.12 163 pAAFJ01000010_00115 - 151 0.12 12.3 2.2 2 2 0.016 16 5.4 0.0 6 74 69 137 69 147 0.85 Protein of unknown function (DUF418) Zip PF02535.22 333 pAAFJ01000010_00115 - 151 0.18 11.0 6.0 1 1 0.0011 1.2 8.3 6.0 25 98 5 78 1 149 0.88 ZIP Zinc transporter Nodulin-like PF06813.13 250 pAAFJ01000010_00115 - 151 0.21 11.0 7.9 1 2 0.0051 5.4 6.4 5.0 149 243 3 96 1 97 0.80 Nodulin-like Nodulin-like PF06813.13 250 pAAFJ01000010_00115 - 151 0.21 11.0 7.9 2 2 7.3e-05 0.077 12.5 3.6 138 222 54 144 52 150 0.58 Nodulin-like DUF4293 PF14126.6 154 pAAFJ01000010_00115 - 151 0.24 11.7 12.1 1 1 0.0005 0.53 10.5 12.1 6 134 15 134 13 147 0.60 Domain of unknown function (DUF4293) FixH PF05751.11 150 pAAFJ01000010_00115 - 151 0.38 10.8 4.2 1 3 0.00039 0.41 10.6 0.3 1 33 6 38 6 48 0.90 FixH FixH PF05751.11 150 pAAFJ01000010_00115 - 151 0.38 10.8 4.2 2 3 0.77 8.1e+02 -0.1 0.0 18 33 88 103 81 109 0.82 FixH FixH PF05751.11 150 pAAFJ01000010_00115 - 151 0.38 10.8 4.2 3 3 1.7 1.8e+03 -1.1 0.2 11 25 124 138 121 148 0.54 FixH DUF1673 PF07895.11 230 pAAFJ01000010_00115 - 151 1.8 8.3 17.6 1 2 5.9e-05 0.062 13.0 8.4 152 227 17 93 4 96 0.65 Protein of unknown function (DUF1673) DUF1673 PF07895.11 230 pAAFJ01000010_00115 - 151 1.8 8.3 17.6 2 2 0.15 1.5e+02 1.9 2.9 156 212 92 147 88 150 0.48 Protein of unknown function (DUF1673) GPI2 PF06432.11 280 pAAFJ01000010_00115 - 151 2.4 7.6 9.8 1 2 0.67 7.1e+02 -0.6 0.7 193 211 18 36 11 39 0.75 Phosphatidylinositol N-acetylglucosaminyltransferase GPI2 PF06432.11 280 pAAFJ01000010_00115 - 151 2.4 7.6 9.8 2 2 0.00011 0.11 11.9 3.3 27 117 38 126 32 139 0.76 Phosphatidylinositol N-acetylglucosaminyltransferase DUF4131 PF13567.6 167 pAAFJ01000010_00115 - 151 3.4 7.3 5.3 1 2 0.00081 0.85 9.3 1.2 14 56 23 79 12 113 0.72 Domain of unknown function (DUF4131) DUF4131 PF13567.6 167 pAAFJ01000010_00115 - 151 3.4 7.3 5.3 2 2 1.3 1.3e+03 -1.1 0.1 3 19 120 136 118 148 0.62 Domain of unknown function (DUF4131) Tmpp129 PF10272.9 355 pAAFJ01000010_00115 - 151 8.7 5.5 9.3 1 2 0.0024 2.5 7.3 5.1 30 103 6 78 1 90 0.77 Putative transmembrane protein precursor Tmpp129 PF10272.9 355 pAAFJ01000010_00115 - 151 8.7 5.5 9.3 2 2 0.14 1.5e+02 1.5 0.5 46 92 90 138 69 150 0.36 Putative transmembrane protein precursor Relaxase PF03432.14 242 pAAFJ01000010_00116 - 554 2e-07 30.9 0.8 1 3 0.14 1.2e+03 -1.2 0.6 125 176 57 91 40 128 0.47 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pAAFJ01000010_00116 - 554 2e-07 30.9 0.8 2 3 2.2e-11 2e-07 30.9 0.8 33 157 142 261 128 286 0.80 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pAAFJ01000010_00116 - 554 2e-07 30.9 0.8 3 3 0.043 3.9e+02 0.5 0.9 131 164 415 461 357 481 0.72 Relaxase/Mobilisation nuclease domain Tektin PF03148.14 383 pAAFJ01000010_00116 - 554 0.19 10.5 6.0 1 2 1.4e-05 0.13 11.0 0.3 38 89 214 265 206 273 0.93 Tektin family Tektin PF03148.14 383 pAAFJ01000010_00116 - 554 0.19 10.5 6.0 2 2 0.014 1.2e+02 1.2 1.1 171 224 412 466 391 471 0.65 Tektin family RHH_7 PF16777.5 74 pAAFJ01000010_00117 - 185 0.085 13.3 6.7 1 2 0.02 1.2e+02 3.2 0.1 36 59 5 28 2 40 0.86 Transcriptional regulator, RHH-like, CopG RHH_7 PF16777.5 74 pAAFJ01000010_00117 - 185 0.085 13.3 6.7 2 2 5.4e-05 0.32 11.4 2.9 24 65 58 100 38 107 0.85 Transcriptional regulator, RHH-like, CopG TMEM95 PF15203.6 151 pAAFJ01000010_00117 - 185 0.58 9.8 2.7 1 2 7.6e-05 0.45 10.1 0.5 26 81 44 105 18 112 0.71 TMEM95 family TMEM95 PF15203.6 151 pAAFJ01000010_00117 - 185 0.58 9.8 2.7 2 2 0.21 1.2e+03 -1.0 0.1 9 42 130 163 125 174 0.71 TMEM95 family pRN1_helical PF13010.6 136 pAAFJ01000010_00117 - 185 4.1 7.4 9.5 1 2 0.00039 2.3 8.2 6.5 4 62 8 73 5 84 0.80 Primase helical domain pRN1_helical PF13010.6 136 pAAFJ01000010_00117 - 185 4.1 7.4 9.5 2 2 0.16 9.3e+02 -0.3 0.1 38 64 115 141 73 161 0.56 Primase helical domain EssA PF10661.9 148 pAAFJ01000010_00118 - 80 0.2 11.5 8.8 1 1 9.8e-06 0.18 11.7 7.9 39 76 4 41 2 58 0.83 WXG100 protein secretion system (Wss), protein EssA ANAPC4 PF12896.7 204 pAAFJ01000010_00119 - 101 0.11 11.9 0.1 1 1 8e-06 0.14 11.6 0.1 45 88 28 70 23 81 0.92 Anaphase-promoting complex, cyclosome, subunit 4 Fic PF02661.18 97 pAAFJ01000017_00001 - 244 1.7e-17 64.0 0.1 1 2 5.1e-21 4.6e-17 62.7 0.0 2 96 80 180 79 181 0.94 Fic/DOC family Fic PF02661.18 97 pAAFJ01000017_00001 - 244 1.7e-17 64.0 0.1 2 2 0.79 7.1e+03 -2.0 0.0 38 57 201 220 191 232 0.58 Fic/DOC family DUF1495 PF07381.11 90 pAAFJ01000017_00001 - 244 0.13 12.2 0.0 1 2 0.00013 1.1 9.1 0.0 29 64 11 46 6 57 0.89 Winged helix DNA-binding domain (DUF1495) DUF1495 PF07381.11 90 pAAFJ01000017_00001 - 244 0.13 12.2 0.0 2 2 0.078 7e+02 0.1 0.0 5 28 190 212 187 222 0.74 Winged helix DNA-binding domain (DUF1495) Toprim_3 PF13362.6 95 pAAFJ01000017_00002 - 376 5.2e-09 36.3 0.0 1 1 9.2e-13 8.2e-09 35.7 0.0 3 94 264 365 262 366 0.83 Toprim domain Toprim_4 PF13662.6 89 pAAFJ01000017_00002 - 376 0.017 15.6 0.1 1 1 3.9e-06 0.035 14.6 0.1 2 80 262 336 261 341 0.89 Toprim domain SSB PF00436.25 104 pAAFJ01000017_00005 - 142 1.4e-29 102.2 0.8 1 1 2.3e-33 2.1e-29 101.6 0.8 1 104 2 104 2 104 0.97 Single-strand binding protein family tRNA_anti-codon PF01336.25 76 pAAFJ01000017_00005 - 142 0.00012 22.0 0.1 1 1 1.9e-08 0.00017 21.5 0.1 12 74 32 102 12 104 0.84 OB-fold nucleic acid binding domain DD_K PF12121.8 23 pAAFJ01000017_00006 - 48 6 7.1 6.5 1 2 0.03 5.3e+02 0.9 0.1 6 11 4 9 1 11 0.77 Dermaseptin DD_K PF12121.8 23 pAAFJ01000017_00006 - 48 6 7.1 6.5 2 2 0.00015 2.6 8.2 2.2 2 9 40 47 40 48 0.89 Dermaseptin DUF1640 PF07798.11 175 pAAFJ01000017_00008 - 112 0.0011 19.0 0.7 1 1 1.6e-07 0.0014 18.7 0.7 99 174 20 111 15 112 0.72 Protein of unknown function (DUF1640) Merozoite_SPAM PF07133.11 182 pAAFJ01000017_00008 - 112 0.0095 16.0 4.1 1 1 1.3e-06 0.012 15.6 4.1 25 81 28 85 22 90 0.90 Merozoite surface protein (SPAM) RecT PF03837.14 199 pAAFJ01000017_00009 - 268 2.3e-36 125.2 0.1 1 1 2.2e-40 4e-36 124.4 0.0 3 194 13 194 11 199 0.92 RecT family GGA_N-GAT PF18308.1 39 pAAFJ01000017_00010 - 195 0.19 11.4 2.8 1 2 8e-06 0.14 11.8 0.7 22 38 8 24 5 25 0.87 GGA N-GAT domain GGA_N-GAT PF18308.1 39 pAAFJ01000017_00010 - 195 0.19 11.4 2.8 2 2 0.43 7.7e+03 -3.4 0.1 22 27 111 116 111 117 0.80 GGA N-GAT domain DUF2624 PF11116.8 83 pAAFJ01000017_00015 - 135 0.041 14.8 0.1 1 1 9.3e-06 0.084 13.8 0.1 19 63 53 97 49 102 0.87 Protein of unknown function (DUF2624) DUF4883 PF16224.5 119 pAAFJ01000017_00015 - 135 0.075 13.3 2.6 1 1 1e-05 0.094 13.0 2.6 22 114 2 95 1 98 0.90 DOmain of unknown function (DUF4883) DUF2031 PF09592.10 227 pAAFJ01000017_00019 - 64 0.013 15.0 5.3 1 1 1.4e-06 0.013 15.1 5.3 109 165 2 58 1 64 0.89 Protein of unknown function (DUF2031) RNA_pol_Rpb2_45 PF10385.9 65 pAAFJ01000017_00019 - 64 0.1 12.9 0.4 1 1 1.4e-05 0.13 12.6 0.4 19 58 11 52 3 58 0.73 RNA polymerase beta subunit external 1 domain DUF4830 PF16112.5 84 pAAFJ01000017_00020 - 97 0.0075 16.7 0.1 1 1 1.1e-06 0.0094 16.4 0.1 21 72 11 75 4 89 0.74 Domain of unknown function (DUF4830) ParE_toxin PF05016.15 90 pAAFJ01000017_00020 - 97 0.07 13.7 0.0 1 1 1e-05 0.094 13.3 0.0 7 88 4 82 1 83 0.74 ParE toxin of type II toxin-antitoxin system, parDE PDDEXK_1 PF12705.7 255 pAAFJ01000017_00022 - 317 1.5e-05 25.0 0.0 1 2 6.2e-09 2.8e-05 24.2 0.0 125 255 94 213 33 213 0.69 PD-(D/E)XK nuclease superfamily PDDEXK_1 PF12705.7 255 pAAFJ01000017_00022 - 317 1.5e-05 25.0 0.0 2 2 1.3 5.8e+03 -3.1 0.0 94 107 251 265 227 303 0.57 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 162 pAAFJ01000017_00022 - 317 4.4e-05 23.6 1.4 1 2 1.1e-08 4.9e-05 23.5 0.1 54 160 98 212 74 214 0.82 Domain of unknown function DUF83 Cas_Cas4 PF01930.17 162 pAAFJ01000017_00022 - 317 4.4e-05 23.6 1.4 2 2 0.89 4e+03 -2.2 0.1 122 139 239 256 229 271 0.51 Domain of unknown function DUF83 MapZ_C2 PF18708.1 92 pAAFJ01000017_00022 - 317 0.021 15.1 0.1 1 2 1.8e-05 0.081 13.2 0.0 58 90 131 164 115 165 0.80 MapZ extracellular C-terminal domain 2 MapZ_C2 PF18708.1 92 pAAFJ01000017_00022 - 317 0.021 15.1 0.1 2 2 2.7 1.2e+04 -3.4 0.0 30 38 306 314 292 315 0.66 MapZ extracellular C-terminal domain 2 NERD PF08378.11 108 pAAFJ01000017_00022 - 317 0.072 13.6 0.1 1 1 3.7e-05 0.17 12.4 0.1 8 70 72 134 65 193 0.69 Nuclease-related domain G-gamma PF00631.22 68 pAAFJ01000017_00023 - 200 0.045 13.8 0.6 1 1 1.2e-05 0.11 12.5 0.6 4 32 8 38 6 46 0.86 GGL domain UPF0449 PF15136.6 101 pAAFJ01000017_00023 - 200 0.15 12.6 1.7 1 2 0.002 18 5.9 0.5 69 92 10 33 2 38 0.81 Uncharacterised protein family UPF0449 UPF0449 PF15136.6 101 pAAFJ01000017_00023 - 200 0.15 12.6 1.7 2 2 0.0021 19 5.8 0.0 54 94 87 129 67 136 0.79 Uncharacterised protein family UPF0449 YycI PF09648.10 230 pAAFJ01000017_00024 - 74 0.011 15.3 0.6 1 1 1.9e-06 0.011 15.3 0.6 149 195 17 61 2 72 0.82 YycH protein Mad3_BUB1_I PF08311.12 124 pAAFJ01000017_00024 - 74 0.023 14.7 1.0 1 1 4.5e-06 0.027 14.5 1.0 6 75 2 64 1 71 0.91 Mad3/BUB1 homology region 1 Rsbr_N PF08678.10 130 pAAFJ01000017_00024 - 74 0.049 13.7 0.1 1 2 0.0072 43 4.2 0.1 97 126 5 34 1 37 0.81 Rsbr N terminal Rsbr_N PF08678.10 130 pAAFJ01000017_00024 - 74 0.049 13.7 0.1 2 2 0.0002 1.2 9.2 0.0 51 83 38 70 23 73 0.79 Rsbr N terminal DUF4450 PF14614.6 217 pAAFL01000016_00001 - 139 0.0036 16.9 0.7 1 2 0.5 3e+03 -2.4 0.0 182 194 34 45 16 58 0.48 Domain of unknown function (DUF4450) DUF4450 PF14614.6 217 pAAFL01000016_00001 - 139 0.0036 16.9 0.7 2 2 9.4e-07 0.0056 16.3 0.1 6 48 74 116 71 125 0.94 Domain of unknown function (DUF4450) VanW PF04294.13 130 pAAFL01000016_00001 - 139 0.013 15.2 0.3 1 2 0.22 1.3e+03 -1.0 0.0 93 117 20 45 10 56 0.66 VanW like protein VanW PF04294.13 130 pAAFL01000016_00001 - 139 0.013 15.2 0.3 2 2 7.5e-06 0.045 13.4 0.1 26 66 88 129 77 134 0.87 VanW like protein SBDS PF01172.18 88 pAAFL01000016_00001 - 139 0.089 12.9 4.1 1 2 0.15 9.2e+02 0.0 0.1 66 76 25 35 13 38 0.82 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS PF01172.18 88 pAAFL01000016_00001 - 139 0.089 12.9 4.1 2 2 2.8e-05 0.17 12.0 2.2 9 31 37 59 32 119 0.73 Shwachman-Bodian-Diamond syndrome (SBDS) protein Phage_lysozyme PF00959.19 109 pAAFL01000016_00002 - 644 1.2e-10 41.7 1.2 1 2 0.99 8.9e+03 -2.8 0.1 17 37 323 343 307 360 0.73 Phage lysozyme Phage_lysozyme PF00959.19 109 pAAFL01000016_00002 - 644 1.2e-10 41.7 1.2 2 2 2.2e-14 2e-10 41.1 0.1 3 108 521 630 519 631 0.86 Phage lysozyme Vta1 PF04652.16 145 pAAFL01000016_00002 - 644 2.6 8.0 10.4 1 4 0.47 4.2e+03 -2.4 0.1 116 137 148 170 140 173 0.78 Vta1 like Vta1 PF04652.16 145 pAAFL01000016_00002 - 644 2.6 8.0 10.4 2 4 0.16 1.4e+03 -0.9 0.2 29 60 317 356 312 369 0.69 Vta1 like Vta1 PF04652.16 145 pAAFL01000016_00002 - 644 2.6 8.0 10.4 3 4 6.3e-06 0.056 13.4 0.9 8 79 392 467 384 471 0.79 Vta1 like Vta1 PF04652.16 145 pAAFL01000016_00002 - 644 2.6 8.0 10.4 4 4 0.19 1.7e+03 -1.2 0.0 21 58 464 501 463 515 0.80 Vta1 like SseC PF04888.12 317 pAAFL01000016_00004 - 1310 0.0049 16.5 0.2 1 1 3e-06 0.014 15.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family ThrE PF06738.12 241 pAAFL01000016_00004 - 1310 0.014 14.8 0.8 1 1 7.8e-06 0.035 13.5 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter Hormone_2 PF00123.20 28 pAAFL01000016_00004 - 1310 0.036 14.0 0.1 1 1 3.5e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone APOBEC_C PF05240.14 78 pAAFL01000016_00004 - 1310 0.061 13.3 0.4 1 1 6.9e-05 0.31 11.0 0.4 26 76 766 819 755 821 0.85 APOBEC-like C-terminal domain UvrA_DNA-bind PF17755.1 110 pAAFL01000016_00005 - 422 0.012 15.9 0.3 1 2 0.00028 5.1 7.5 0.1 24 61 32 69 19 84 0.84 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pAAFL01000016_00005 - 422 0.012 15.9 0.3 2 2 0.00086 15 5.9 0.0 15 33 92 109 88 126 0.76 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pAAFL01000016_00007 - 426 0.0051 17.1 0.3 1 3 0.00018 3.2 8.1 0.0 24 65 36 77 30 90 0.84 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pAAFL01000016_00007 - 426 0.0051 17.1 0.3 2 3 0.00088 16 5.9 0.0 15 33 96 113 92 129 0.75 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pAAFL01000016_00007 - 426 0.0051 17.1 0.3 3 3 0.29 5.3e+03 -2.2 0.0 77 97 316 336 306 338 0.82 UvrA DNA-binding domain Glyco_tranf_2_5 PF13712.6 210 pAAFL01000016_00008 - 267 0.00068 19.4 3.8 1 1 7.1e-08 0.0013 18.5 3.8 4 77 114 190 111 198 0.85 Glycosyltransferase like family TraG_N PF07916.11 467 pAAFL01000016_00009 - 900 3e-39 135.2 20.8 1 3 1.7e-43 3e-39 135.2 20.8 38 465 23 446 1 452 0.78 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pAAFL01000016_00009 - 900 3e-39 135.2 20.8 2 3 0.1 1.8e+03 -2.6 0.9 267 318 538 590 504 600 0.52 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pAAFL01000016_00009 - 900 3e-39 135.2 20.8 3 3 1 1.8e+04 -14.0 16.2 228 265 808 845 652 899 0.59 TraG-like protein, N-terminal region DUF4131 PF13567.6 167 pAAFL01000016_00010 - 106 0.0008 19.1 0.1 1 1 2.8e-07 0.001 18.8 0.1 3 83 19 97 17 100 0.70 Domain of unknown function (DUF4131) DUF981 PF06168.11 187 pAAFL01000016_00010 - 106 0.015 15.2 3.3 1 1 5.2e-06 0.019 14.9 3.3 119 175 9 66 4 73 0.87 Protein of unknown function (DUF981) Wzy_C PF04932.15 155 pAAFL01000016_00010 - 106 0.056 13.1 1.3 1 1 1.8e-05 0.064 12.9 1.3 19 65 24 71 19 96 0.81 O-Antigen ligase DUF2663 PF10864.8 127 pAAFL01000016_00010 - 106 0.13 12.7 2.1 1 1 4.5e-05 0.16 12.4 2.1 8 80 9 81 2 86 0.58 Protein of unknown function (DUF2663) DUF2721 PF11026.8 129 pAAFL01000016_00010 - 106 0.27 11.1 5.3 1 1 9.5e-05 0.34 10.8 5.3 59 118 12 66 3 69 0.85 Protein of unknown function (DUF2721) YafQ_toxin PF15738.5 88 pAAFL01000016_00011 - 91 8.9e-29 99.7 1.1 1 1 5.4e-33 9.7e-29 99.5 1.1 2 88 3 89 2 89 0.98 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 pAAFL01000016_00013 - 93 1.1e-07 32.4 0.1 1 1 6.6e-12 1.2e-07 32.3 0.1 4 82 6 85 3 89 0.87 ParE toxin of type II toxin-antitoxin system, parDE HicB_lk_antitox PF15919.5 123 pAAFL01000016_00015 - 119 8.3e-09 35.6 0.3 1 2 4.2e-06 0.038 14.1 0.0 1 60 12 74 12 79 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 pAAFL01000016_00015 - 119 8.3e-09 35.6 0.3 2 2 3.9e-08 0.00035 20.7 0.1 88 123 77 108 72 108 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 pAAFL01000016_00015 - 119 0.15 11.9 0.0 1 1 3.3e-05 0.29 11.0 0.0 3 35 80 112 79 115 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HicA_toxin PF07927.12 58 pAAFL01000016_00016 - 86 1.8e-06 27.9 0.0 1 1 2.1e-10 3.8e-06 26.9 0.0 5 55 35 82 31 83 0.88 HicA toxin of bacterial toxin-antitoxin, DUF5309 PF17236.2 280 pAAFL01000016_00017 - 81 3e-05 23.5 0.5 1 1 1.8e-09 3.3e-05 23.4 0.5 4 53 24 74 21 81 0.82 Family of unknown function (DUF5309) SGT1 PF07093.11 583 pAAFL01000016_00019 - 50 0.046 12.2 2.7 1 1 7.5e-06 0.045 12.2 2.7 511 553 7 49 1 50 0.79 SGT1 protein PG_binding_4 PF12229.8 114 pAAFL01000016_00019 - 50 0.057 13.7 1.0 1 1 1.1e-05 0.065 13.5 1.0 42 79 10 48 2 50 0.81 Putative peptidoglycan binding domain DUF2175 PF09943.9 98 pAAFL01000016_00019 - 50 0.077 13.3 1.2 1 1 1.4e-05 0.082 13.2 1.2 60 89 9 38 2 47 0.83 Uncharacterized protein conserved in archaea (DUF2175) DUF4795 PF16043.5 204 pAAFL01000016_00020 - 201 0.026 14.1 0.1 1 1 2.4e-06 0.043 13.4 0.1 60 124 45 109 31 174 0.86 Domain of unknown function (DUF4795) DUF3825 PF12873.7 239 pAAFL01000016_00021 - 335 1.9e-28 99.6 0.3 1 1 1.7e-32 3e-28 98.9 0.3 2 239 107 330 106 330 0.85 Domain of unknown function (DUF3825) GAGBD PF16828.5 152 pAAFL01000016_00022 - 80 0.011 15.8 1.4 1 1 6.7e-07 0.012 15.7 1.4 2 69 9 76 8 80 0.90 GAG-binding domain on surface antigen IMS_C PF11799.8 118 pAAFL01000016_00025 - 236 1.1e-12 48.7 0.0 1 1 2.1e-16 1.9e-12 48.0 0.0 8 111 94 221 90 226 0.91 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 32 pAAFL01000016_00025 - 236 0.0002 21.5 0.0 1 2 7.5e-08 0.00067 19.8 0.1 6 32 19 46 16 46 0.92 IMS family HHH motif IMS_HHH PF11798.8 32 pAAFL01000016_00025 - 236 0.0002 21.5 0.0 2 2 1.6 1.4e+04 -3.2 0.0 17 28 79 90 79 92 0.79 IMS family HHH motif AAA_25 PF13481.6 194 pAAFL01000016_00026 - 623 4.9e-30 104.5 0.0 1 1 8.5e-33 8.9e-30 103.7 0.0 11 193 306 475 297 476 0.87 AAA domain Toprim_2 PF13155.6 90 pAAFL01000016_00026 - 623 6.6e-18 64.9 0.0 1 2 2.4e-20 2.5e-17 63.1 0.0 1 90 189 278 189 278 0.91 Toprim-like Toprim_2 PF13155.6 90 pAAFL01000016_00026 - 623 6.6e-18 64.9 0.0 2 2 4.5 4.7e+03 -1.9 0.1 44 77 393 427 381 441 0.75 Toprim-like DUF3991 PF13154.6 76 pAAFL01000016_00026 - 623 3.3e-14 53.0 0.0 1 2 1.6e-16 1.7e-13 50.7 0.0 1 74 112 183 112 185 0.93 Protein of unknown function (DUF3991) DUF3991 PF13154.6 76 pAAFL01000016_00026 - 623 3.3e-14 53.0 0.0 2 2 2.8 3e+03 -1.3 0.0 6 19 589 602 587 620 0.71 Protein of unknown function (DUF3991) DnaB_C PF03796.15 255 pAAFL01000016_00026 - 623 8.6e-09 35.1 0.0 1 2 0.00037 0.39 10.0 0.0 19 45 329 355 326 366 0.87 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pAAFL01000016_00026 - 623 8.6e-09 35.1 0.0 2 2 4.7e-08 4.9e-05 22.8 0.0 90 185 385 478 369 490 0.79 DnaB-like helicase C terminal domain Toprim_3 PF13362.6 95 pAAFL01000016_00026 - 623 1.8e-08 34.6 0.2 1 2 4.2e-10 4.4e-07 30.2 0.0 2 92 188 281 187 283 0.86 Toprim domain Toprim_3 PF13362.6 95 pAAFL01000016_00026 - 623 1.8e-08 34.6 0.2 2 2 0.46 4.8e+02 1.2 0.6 40 85 393 439 381 446 0.77 Toprim domain ATPase PF06745.13 231 pAAFL01000016_00026 - 623 7.2e-06 25.5 0.1 1 1 1.9e-07 0.0002 20.8 0.0 16 171 326 478 324 511 0.73 KaiC AAA_22 PF13401.6 137 pAAFL01000016_00026 - 623 0.0002 21.6 0.0 1 1 5.5e-07 0.00058 20.2 0.0 6 130 330 470 329 475 0.76 AAA domain NACHT PF05729.12 166 pAAFL01000016_00026 - 623 0.0033 17.4 0.0 1 2 1.1 1.1e+03 -0.7 0.0 43 71 6 33 3 43 0.76 NACHT domain NACHT PF05729.12 166 pAAFL01000016_00026 - 623 0.0033 17.4 0.0 2 2 2.5e-05 0.027 14.4 0.0 2 28 331 357 330 429 0.89 NACHT domain Toprim_4 PF13662.6 89 pAAFL01000016_00026 - 623 0.0078 16.7 0.0 1 1 2.5e-05 0.026 15.0 0.0 47 88 227 267 212 268 0.81 Toprim domain AAA_5 PF07728.14 138 pAAFL01000016_00026 - 623 0.018 15.0 0.0 1 1 6e-05 0.063 13.3 0.0 3 26 333 357 332 406 0.82 AAA domain (dynein-related subfamily) Rad51 PF08423.11 255 pAAFL01000016_00026 - 623 0.05 12.8 0.0 1 1 0.00051 0.54 9.5 0.0 34 190 326 475 324 494 0.69 Rad51 Toprim PF01751.22 103 pAAFL01000016_00026 - 623 0.051 13.8 0.0 1 1 0.00011 0.12 12.7 0.0 51 87 222 258 204 269 0.85 Toprim domain AAA_11 PF13086.6 261 pAAFL01000016_00026 - 623 0.065 13.0 0.0 1 2 0.24 2.6e+02 1.2 0.0 50 97 230 271 208 294 0.80 AAA domain AAA_11 PF13086.6 261 pAAFL01000016_00026 - 623 0.065 13.0 0.0 2 2 0.00095 1 9.1 0.0 18 43 330 355 320 400 0.76 AAA domain RNA_helicase PF00910.22 107 pAAFL01000016_00026 - 623 0.13 12.7 0.0 1 2 2.6 2.8e+03 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 pAAFL01000016_00026 - 623 0.13 12.7 0.0 2 2 0.00069 0.73 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase PhoH PF02562.16 205 pAAFL01000016_00026 - 623 0.17 11.3 0.0 1 1 0.00034 0.36 10.3 0.0 20 47 330 357 322 362 0.88 PhoH-like protein zf-CHC2 PF01807.20 98 pAAFL01000016_00026 - 623 0.18 11.7 0.0 1 1 0.00035 0.37 10.6 0.0 44 88 40 82 8 90 0.84 CHC2 zinc finger DUF2075 PF09848.9 363 pAAFL01000016_00026 - 623 0.2 10.8 0.0 1 1 0.00031 0.33 10.2 0.0 2 26 330 354 329 398 0.89 Uncharacterized conserved protein (DUF2075) MobA_MobL PF03389.15 222 pAAFL01000016_00027 - 498 3.7e-79 265.5 0.0 1 2 7.3e-82 1.4e-78 263.6 0.0 1 222 17 246 17 246 0.99 MobA/MobL family MobA_MobL PF03389.15 222 pAAFL01000016_00027 - 498 3.7e-79 265.5 0.0 2 2 0.85 1.7e+03 -1.5 0.1 7 188 309 339 297 367 0.59 MobA/MobL family Spectrin PF00435.21 105 pAAFL01000016_00027 - 498 0.015 15.8 2.4 1 2 9e-05 0.18 12.3 0.2 6 102 269 365 264 368 0.75 Spectrin repeat Spectrin PF00435.21 105 pAAFL01000016_00027 - 498 0.015 15.8 2.4 2 2 0.14 2.7e+02 2.1 0.1 33 90 406 463 396 464 0.78 Spectrin repeat Prominin PF05478.11 800 pAAFL01000016_00027 - 498 0.02 12.9 1.9 1 1 1.4e-05 0.029 12.4 1.9 542 695 321 479 298 487 0.84 Prominin Snapin_Pallidin PF14712.6 90 pAAFL01000016_00027 - 498 0.021 15.2 2.0 1 2 3e-05 0.059 13.8 0.3 14 69 337 393 335 395 0.95 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 pAAFL01000016_00027 - 498 0.021 15.2 2.0 2 2 0.69 1.4e+03 -0.2 0.1 36 69 430 465 427 482 0.67 Snapin/Pallidin DUF2408 PF10303.9 135 pAAFL01000016_00027 - 498 0.032 14.8 2.4 1 2 3e-05 0.06 13.9 0.3 39 120 312 394 253 396 0.74 Protein of unknown function (DUF2408) DUF2408 PF10303.9 135 pAAFL01000016_00027 - 498 0.032 14.8 2.4 2 2 0.56 1.1e+03 0.1 0.1 43 67 429 454 398 489 0.61 Protein of unknown function (DUF2408) Tup_N PF08581.10 77 pAAFL01000016_00027 - 498 0.065 13.5 2.3 1 4 2.7 5.3e+03 -2.2 0.0 45 61 158 174 157 177 0.82 Tup N-terminal Tup_N PF08581.10 77 pAAFL01000016_00027 - 498 0.065 13.5 2.3 2 4 4.2 8.4e+03 -2.8 0.0 19 48 244 273 229 276 0.72 Tup N-terminal Tup_N PF08581.10 77 pAAFL01000016_00027 - 498 0.065 13.5 2.3 3 4 0.0033 6.6 7.1 0.3 28 64 339 375 318 383 0.90 Tup N-terminal Tup_N PF08581.10 77 pAAFL01000016_00027 - 498 0.065 13.5 2.3 4 4 0.034 67 3.9 0.0 12 51 422 461 417 467 0.74 Tup N-terminal Mod_r PF07200.13 146 pAAFL01000016_00027 - 498 0.65 10.1 8.1 1 3 0.00031 0.62 10.2 0.4 54 101 334 383 293 387 0.76 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 pAAFL01000016_00027 - 498 0.65 10.1 8.1 2 3 0.094 1.9e+02 2.1 0.2 69 91 429 451 398 465 0.69 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 pAAFL01000016_00027 - 498 0.65 10.1 8.1 3 3 0.14 2.8e+02 1.5 1.6 18 57 451 490 427 498 0.33 Modifier of rudimentary (Mod(r)) protein SOAR PF16533.5 101 pAAFL01000016_00027 - 498 1.2 9.1 5.4 1 2 0.00078 1.5 8.8 0.1 50 97 326 373 300 376 0.81 STIM1 Orai1-activating region SOAR PF16533.5 101 pAAFL01000016_00027 - 498 1.2 9.1 5.4 2 2 0.35 6.9e+02 0.3 2.1 19 58 398 455 388 490 0.72 STIM1 Orai1-activating region DUF4407 PF14362.6 298 pAAFL01000016_00027 - 498 5.1 6.4 8.4 1 1 0.027 53 3.0 8.4 130 235 333 446 233 498 0.58 Domain of unknown function (DUF4407) DUF3847 PF12958.7 81 pAAFL01000016_00028 - 119 1.8e-31 108.1 8.2 1 1 5.7e-35 2.6e-31 107.6 8.2 1 81 6 89 6 89 0.98 Protein of unknown function (DUF3847) CENP-Q PF13094.6 168 pAAFL01000016_00028 - 119 0.034 14.3 11.9 1 1 9.8e-06 0.044 14.0 11.9 46 96 5 56 2 115 0.74 CENP-Q, a CENPA-CAD centromere complex subunit TPR_8 PF13181.6 34 pAAFL01000016_00028 - 119 0.078 13.2 0.1 1 1 4.4e-05 0.2 12.0 0.1 6 27 20 41 16 48 0.89 Tetratricopeptide repeat PHM7_cyt PF14703.6 176 pAAFL01000016_00028 - 119 4.2 7.6 7.2 1 1 0.0015 6.6 6.9 7.2 40 87 3 56 1 111 0.75 Cytosolic domain of 10TM putative phosphate transporter CPT PF07931.12 174 pAAFL01000016_00029 - 146 4e-06 26.8 0.0 1 1 1.4e-09 4.9e-06 26.5 0.0 59 172 20 137 11 139 0.78 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 130 pAAFL01000016_00029 - 146 9.4e-06 26.2 0.0 1 1 3.2e-09 1.2e-05 25.9 0.0 46 122 15 98 1 106 0.77 AAA domain AAA_33 PF13671.6 143 pAAFL01000016_00029 - 146 0.00063 19.9 0.0 1 1 2.2e-07 0.0008 19.6 0.0 55 136 30 109 9 112 0.82 AAA domain MKT1_N PF12247.8 90 pAAFL01000016_00029 - 146 0.027 14.8 0.0 1 1 1.7e-05 0.063 13.6 0.0 15 52 5 40 3 131 0.90 Temperature dependent protein affecting M2 dsRNA replication AAA_17 PF13207.6 136 pAAFL01000016_00029 - 146 0.14 12.6 0.0 1 1 5.4e-05 0.19 12.1 0.0 55 128 27 96 12 103 0.73 AAA domain Fructosamin_kin PF03881.14 288 pAAFL01000016_00030 - 89 0.097 11.9 0.0 1 1 5.4e-06 0.097 11.9 0.0 45 94 35 84 7 89 0.70 Fructosamine kinase Ank_3 PF13606.6 31 pAAFL01000019_00001 - 304 9.9e-11 40.9 0.3 1 4 0.015 53 4.9 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 pAAFL01000019_00001 - 304 9.9e-11 40.9 0.3 2 4 0.024 85 4.2 0.0 10 29 142 160 132 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pAAFL01000019_00001 - 304 9.9e-11 40.9 0.3 3 4 5.6e-07 0.002 18.5 0.0 2 30 168 195 167 196 0.95 Ankyrin repeat Ank_3 PF13606.6 31 pAAFL01000019_00001 - 304 9.9e-11 40.9 0.3 4 4 0.0018 6.3 7.7 0.0 1 30 206 235 206 236 0.92 Ankyrin repeat Ank_2 PF12796.7 83 pAAFL01000019_00001 - 304 1.5e-08 35.1 0.1 1 2 0.49 1.8e+03 -0.4 0.0 4 18 74 92 70 127 0.58 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pAAFL01000019_00001 - 304 1.5e-08 35.1 0.1 2 2 3.2e-11 1.1e-07 32.3 0.0 5 80 142 235 138 238 0.79 Ankyrin repeats (3 copies) Ank_4 PF13637.6 55 pAAFL01000019_00001 - 304 4.2e-06 27.2 0.1 1 3 0.81 2.9e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pAAFL01000019_00001 - 304 4.2e-06 27.2 0.1 2 3 4.4e-07 0.0016 19.0 0.0 13 55 146 188 134 188 0.83 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pAAFL01000019_00001 - 304 4.2e-06 27.2 0.1 3 3 0.018 63 4.3 0.0 3 28 209 235 189 245 0.86 Ankyrin repeats (many copies) Ank PF00023.30 32 pAAFL01000019_00001 - 304 0.00044 20.6 0.0 1 3 0.019 69 4.1 0.0 10 25 142 158 132 166 0.80 Ankyrin repeat Ank PF00023.30 32 pAAFL01000019_00001 - 304 0.00044 20.6 0.0 2 3 0.0042 15 6.2 0.0 2 31 168 198 167 199 0.87 Ankyrin repeat Ank PF00023.30 32 pAAFL01000019_00001 - 304 0.00044 20.6 0.0 3 3 0.0051 18 6.0 0.0 15 28 221 235 206 238 0.69 Ankyrin repeat Ank_5 PF13857.6 56 pAAFL01000019_00001 - 304 0.066 13.5 0.0 1 3 0.59 2.1e+03 -0.8 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pAAFL01000019_00001 - 304 0.066 13.5 0.0 2 3 0.025 89 3.6 0.0 23 54 141 173 139 175 0.77 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pAAFL01000019_00001 - 304 0.066 13.5 0.0 3 3 0.0063 22 5.5 0.0 15 43 179 207 173 210 0.81 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 pAAFL01000019_00002 - 573 2.8e-07 30.8 0.0 1 4 2 1.2e+04 -3.3 0.2 43 74 260 291 257 302 0.68 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pAAFL01000019_00002 - 573 2.8e-07 30.8 0.0 2 4 0.46 2.8e+03 -1.3 1.0 37 64 338 366 335 373 0.73 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pAAFL01000019_00002 - 573 2.8e-07 30.8 0.0 3 4 0.83 5e+03 -2.1 0.2 12 29 378 395 364 399 0.53 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pAAFL01000019_00002 - 573 2.8e-07 30.8 0.0 4 4 4.6e-11 2.8e-07 30.8 0.0 18 84 427 495 403 497 0.76 Restriction endonuclease fold toxin 7 VRR_NUC PF08774.11 108 pAAFL01000019_00002 - 573 0.027 14.6 0.0 1 1 1.6e-05 0.093 12.8 0.0 37 96 421 477 379 484 0.73 VRR-NUC domain DUF2239 PF09998.9 184 pAAFL01000019_00002 - 573 3.7 7.3 8.1 1 2 0.00027 1.6 8.5 0.6 23 71 46 92 38 103 0.74 Uncharacterized protein conserved in bacteria (DUF2239) DUF2239 PF09998.9 184 pAAFL01000019_00002 - 573 3.7 7.3 8.1 2 2 0.027 1.6e+02 2.0 1.7 5 66 260 342 257 381 0.64 Uncharacterized protein conserved in bacteria (DUF2239) Ank_3 PF13606.6 31 pAAFL01000019_00003 - 313 1.4e-10 40.5 0.2 1 4 0.015 55 4.8 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 pAAFL01000019_00003 - 313 1.4e-10 40.5 0.2 2 4 0.026 92 4.1 0.0 10 29 142 160 134 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pAAFL01000019_00003 - 313 1.4e-10 40.5 0.2 3 4 8e-07 0.0029 18.0 0.0 2 30 168 195 167 196 0.95 Ankyrin repeat Ank_3 PF13606.6 31 pAAFL01000019_00003 - 313 1.4e-10 40.5 0.2 4 4 0.0017 6.1 7.7 0.0 1 30 206 235 206 236 0.91 Ankyrin repeat Ank_2 PF12796.7 83 pAAFL01000019_00003 - 313 8.2e-09 35.9 0.0 1 2 0.54 1.9e+03 -0.5 0.0 4 18 74 92 70 122 0.55 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pAAFL01000019_00003 - 313 8.2e-09 35.9 0.0 2 2 1.5e-11 5.5e-08 33.3 0.0 5 80 142 235 138 238 0.79 Ankyrin repeats (3 copies) Ank_4 PF13637.6 55 pAAFL01000019_00003 - 313 1.1e-05 25.9 0.1 1 3 0.84 3e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pAAFL01000019_00003 - 313 1.1e-05 25.9 0.1 2 3 2.9e-07 0.001 19.6 0.0 13 55 146 188 133 188 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pAAFL01000019_00003 - 313 1.1e-05 25.9 0.1 3 3 0.071 2.6e+02 2.4 0.0 3 28 209 235 206 244 0.82 Ankyrin repeats (many copies) Ank PF00023.30 32 pAAFL01000019_00003 - 313 5.2e-05 23.5 0.0 1 3 0.022 78 4.0 0.0 10 25 142 158 130 165 0.82 Ankyrin repeat Ank PF00023.30 32 pAAFL01000019_00003 - 313 5.2e-05 23.5 0.0 2 3 0.00048 1.7 9.2 0.0 2 31 168 198 167 199 0.87 Ankyrin repeat Ank PF00023.30 32 pAAFL01000019_00003 - 313 5.2e-05 23.5 0.0 3 3 0.0049 18 6.0 0.0 15 28 221 235 206 238 0.69 Ankyrin repeat Ank_5 PF13857.6 56 pAAFL01000019_00003 - 313 0.028 14.8 0.1 1 4 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pAAFL01000019_00003 - 313 0.028 14.8 0.1 2 4 0.012 42 4.6 0.0 23 54 141 173 139 174 0.87 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pAAFL01000019_00003 - 313 0.028 14.8 0.1 3 4 0.00038 1.4 9.4 0.0 11 46 163 198 153 209 0.81 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pAAFL01000019_00003 - 313 0.028 14.8 0.1 4 4 2.5 9.1e+03 -2.8 0.0 34 53 226 243 222 244 0.56 Ankyrin repeats (many copies) Phage_GPD PF05954.11 304 pAAFL01000019_00004 - 882 1.1e-17 64.3 0.0 1 1 5e-21 1.8e-17 63.6 0.0 23 281 74 360 45 376 0.74 Phage late control gene D protein (GPD) DUF2345 PF10106.9 151 pAAFL01000019_00004 - 882 0.01 15.7 1.7 1 1 8.1e-06 0.029 14.2 1.7 28 132 775 874 772 878 0.84 Uncharacterized protein conserved in bacteria (DUF2345) Gp5_C PF06715.12 24 pAAFL01000019_00004 - 882 0.013 15.6 4.6 1 4 5.3e-05 0.19 11.9 0.1 3 24 657 678 655 686 0.67 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pAAFL01000019_00004 - 882 0.013 15.6 4.6 2 4 0.2 7.2e+02 0.7 0.0 13 24 731 742 730 742 0.89 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pAAFL01000019_00004 - 882 0.013 15.6 4.6 3 4 0.61 2.2e+03 -0.8 0.0 1 18 742 760 742 761 0.83 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pAAFL01000019_00004 - 882 0.013 15.6 4.6 4 4 0.22 7.8e+02 0.6 0.1 2 23 752 773 751 774 0.81 Gp5 C-terminal repeat (3 copies) DUF3540 PF12059.8 199 pAAFL01000019_00004 - 882 0.1 12.4 0.8 1 2 0.25 9.1e+02 -0.5 0.0 31 45 534 548 532 555 0.80 Protein of unknown function (DUF3540) DUF3540 PF12059.8 199 pAAFL01000019_00004 - 882 0.1 12.4 0.8 2 2 0.00012 0.45 10.3 0.2 60 128 783 850 777 861 0.85 Protein of unknown function (DUF3540) TCL1_MTCP1 PF01840.17 116 pAAFL01000019_00004 - 882 0.11 12.2 0.0 1 2 0.053 1.9e+02 1.7 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 pAAFL01000019_00004 - 882 0.11 12.2 0.0 2 2 0.00085 3 7.5 0.0 19 52 461 494 452 517 0.80 TCL1/MTCP1 family T6SS_TssG PF06996.11 299 pAAFL01000019_00005 - 302 1.9e-47 161.9 0.0 1 1 1.2e-51 2.2e-47 161.8 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG T6SS_TssF PF05947.12 603 pAAFL01000019_00006 - 573 2.3e-110 369.9 0.0 1 1 1.5e-114 2.6e-110 369.8 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF GPW_gp25 PF04965.14 95 pAAFL01000019_00007 - 130 1.2e-09 37.8 0.0 1 1 2.6e-13 1.5e-09 37.5 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 pAAFL01000019_00007 - 130 0.0076 16.1 0.3 1 1 1.6e-06 0.0097 15.8 0.3 93 159 20 87 6 92 0.89 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 pAAFL01000019_00007 - 130 0.051 13.0 0.1 1 2 2.1e-05 0.12 11.8 0.1 82 121 5 46 1 64 0.83 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 pAAFL01000019_00007 - 130 0.051 13.0 0.1 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 422 pAAFL01000019_00008 - 484 1e-169 564.9 0.0 1 1 1.3e-173 1.2e-169 564.6 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 pAAFL01000019_00008 - 484 0.096 12.7 0.8 1 3 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pAAFL01000019_00008 - 484 0.096 12.7 0.8 2 3 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pAAFL01000019_00008 - 484 0.096 12.7 0.8 3 3 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 155 pAAFL01000019_00009 - 161 1.2e-51 174.6 3.8 1 1 1.5e-55 1.3e-51 174.4 3.8 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 pAAFL01000019_00009 - 161 0.082 11.5 0.0 1 1 1.1e-05 0.099 11.2 0.0 171 227 55 111 40 127 0.90 Chitin synthase T6SS_VasJ PF16989.5 255 pAAFL01000019_00010 - 415 1.2e-12 47.9 0.0 1 1 3.9e-16 1.7e-12 47.3 0.0 3 153 176 323 174 408 0.84 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 pAAFL01000019_00010 - 415 0.00014 22.0 0.2 1 2 1.8e-07 0.0008 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 pAAFL01000019_00010 - 415 0.00014 22.0 0.2 2 2 0.31 1.4e+03 -0.6 0.0 47 71 185 209 162 212 0.83 ImpA, N-terminal, type VI secretion system PX PF00787.24 113 pAAFL01000019_00010 - 415 0.074 13.0 14.5 1 3 0.00025 1.1 9.2 2.4 31 111 33 130 20 131 0.67 PX domain PX PF00787.24 113 pAAFL01000019_00010 - 415 0.074 13.0 14.5 2 3 0.00084 3.8 7.5 0.2 16 112 155 275 132 276 0.68 PX domain PX PF00787.24 113 pAAFL01000019_00010 - 415 0.074 13.0 14.5 3 3 0.052 2.3e+02 1.8 0.7 22 97 316 396 296 404 0.70 PX domain TetR_C_24 PF17932.1 114 pAAFL01000019_00010 - 415 0.19 12.0 0.0 1 1 8.8e-05 0.4 11.0 0.0 20 68 71 119 62 132 0.87 Tetracyclin repressor-like, C-terminal domain T6SS-SciN PF12790.7 120 pAAFL01000019_00011 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 428 pAAFL01000019_00012 - 465 1.3e-112 376.6 0.0 1 1 8.6e-117 1.5e-112 376.4 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 205 pAAFL01000019_00013 - 257 3.6e-35 121.5 0.0 1 1 2.3e-39 4.2e-35 121.4 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_HCP PF05638.12 129 pAAFL01000019_00014 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 259 pAAFL01000019_00015 - 1175 6.2e-41 140.5 0.0 1 1 4.7e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 pAAFL01000019_00015 - 1175 5.9e-40 137.0 0.5 1 1 4.7e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 pAAFL01000019_00015 - 1175 3.5e-26 92.4 2.0 1 1 2.4e-29 5.3e-26 91.8 2.0 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 pAAFL01000019_00015 - 1175 0.0003 20.7 0.0 1 2 1e-05 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 pAAFL01000019_00015 - 1175 0.0003 20.7 0.0 2 2 0.054 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 pAAFL01000019_00015 - 1175 0.0011 19.0 0.1 1 2 1.9e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 pAAFL01000019_00015 - 1175 0.0011 19.0 0.1 2 2 4.7 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 pAAFL01000019_00015 - 1175 0.0036 16.9 5.2 1 3 1.7e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 pAAFL01000019_00015 - 1175 0.0036 16.9 5.2 2 3 0.089 2e+02 1.5 0.1 41 78 451 488 431 588 0.81 O-Antigen ligase Wzy_C PF04932.15 155 pAAFL01000019_00015 - 1175 0.0036 16.9 5.2 3 3 0.087 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 pAAFL01000019_00015 - 1175 0.055 13.2 0.1 1 2 0.00019 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pAAFL01000019_00015 - 1175 0.055 13.2 0.1 2 2 0.83 1.8e+03 -1.3 0.0 22 37 841 856 831 873 0.75 P-loop containing region of AAA domain DrrA_P4M PF14860.6 103 pAAFL01000019_00015 - 1175 0.4 10.6 5.8 1 2 5.2 1.2e+04 -3.8 0.2 58 91 485 518 476 521 0.55 DrrA phosphatidylinositol 4-phosphate binding domain DrrA_P4M PF14860.6 103 pAAFL01000019_00015 - 1175 0.4 10.6 5.8 2 2 4.9e-05 0.11 12.3 1.4 12 58 541 587 530 617 0.85 DrrA phosphatidylinositol 4-phosphate binding domain FHA PF00498.26 69 pAAFL01000019_00016 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 pAAFL01000019_00016 - 299 0.0018 18.5 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 pAAFL01000019_00016 - 299 0.0018 18.5 0.0 2 2 2 1.2e+04 -3.3 0.0 31 56 199 224 199 226 0.79 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 pAAFL01000019_00016 - 299 0.066 13.6 2.7 1 2 0.047 2.8e+02 2.0 0.1 18 57 107 146 105 149 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 pAAFL01000019_00016 - 299 0.066 13.6 2.7 2 2 0.00011 0.66 10.4 0.7 21 80 151 210 146 215 0.91 Ferredoxin-fold anticodon binding domain UvrA_DNA-bind PF17755.1 110 pAAFL01000020_00001 - 299 0.00041 20.7 0.5 1 2 1.1e-05 0.19 12.1 0.1 24 65 32 73 19 86 0.82 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pAAFL01000020_00001 - 299 0.00041 20.7 0.5 2 2 0.00055 9.8 6.6 0.0 15 33 92 109 88 128 0.76 UvrA DNA-binding domain Y1_Tnp PF01797.16 121 pAAFL01000020_00004 - 77 1.9e-13 50.5 2.2 1 1 1.3e-17 2.3e-13 50.3 2.2 2 57 13 70 12 76 0.89 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 69 pAAFL01000020_00005 - 415 2.2e-22 78.7 1.3 1 1 2.3e-25 4.6e-22 77.7 1.3 1 69 324 393 324 393 0.98 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 pAAFL01000020_00005 - 415 5.9e-13 49.1 2.4 1 1 7.1e-16 1.4e-12 47.9 2.4 10 118 187 302 172 304 0.76 Probable transposase HTH_OrfB_IS605 PF12323.8 47 pAAFL01000020_00005 - 415 3.8e-10 39.1 2.8 1 1 4.2e-13 8.4e-10 38.0 2.8 1 46 1 47 1 48 0.95 Helix-turn-helix domain HypA PF01155.19 112 pAAFL01000020_00005 - 415 0.022 14.8 0.4 1 1 2.7e-05 0.053 13.5 0.4 19 96 298 380 281 391 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 4_1_CTD PF05902.13 107 pAAFL01000020_00005 - 415 0.058 13.5 0.1 1 3 0.00018 0.35 11.0 0.0 35 96 47 108 16 115 0.83 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 pAAFL01000020_00005 - 415 0.058 13.5 0.1 2 3 2 4e+03 -2.1 0.0 25 37 178 190 158 231 0.62 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 pAAFL01000020_00005 - 415 0.058 13.5 0.1 3 3 2.8 5.5e+03 -2.5 0.0 51 66 333 348 331 355 0.83 4.1 protein C-terminal domain (CTD) Zn_ribbon_17 PF17120.5 58 pAAFL01000020_00005 - 415 0.071 12.7 0.5 1 1 6.8e-05 0.14 11.8 0.5 4 32 351 384 348 395 0.81 Zinc-ribbon, C4HC2 type DUF1161 PF06649.12 52 pAAFL01000020_00005 - 415 0.12 12.6 0.8 1 1 0.00016 0.32 11.2 0.8 3 32 270 299 269 311 0.89 Protein of unknown function (DUF1161) Prok-RING_1 PF14446.6 54 pAAFL01000020_00005 - 415 0.16 11.9 3.2 1 1 0.00018 0.36 10.8 3.2 2 33 349 383 348 388 0.83 Prokaryotic RING finger family 1 Spt4 PF06093.13 77 pAAFL01000020_00005 - 415 0.82 9.8 4.4 1 2 3.3 6.5e+03 -2.7 0.0 55 70 78 93 76 98 0.76 Spt4/RpoE2 zinc finger Spt4 PF06093.13 77 pAAFL01000020_00005 - 415 0.82 9.8 4.4 2 2 0.00041 0.81 9.8 2.2 2 30 352 382 351 393 0.79 Spt4/RpoE2 zinc finger Fic PF02661.18 97 pAAFL01000020_00006 - 264 8.4e-24 84.3 0.1 1 1 2.3e-27 2.1e-23 83.0 0.1 2 96 95 191 94 192 0.96 Fic/DOC family S_layer_C PF05124.12 220 pAAFL01000020_00006 - 264 6.6 6.6 8.7 1 2 6.2e-05 0.56 10.2 2.0 12 114 2 116 1 132 0.69 S-layer like family, C-terminal region S_layer_C PF05124.12 220 pAAFL01000020_00006 - 264 6.6 6.6 8.7 2 2 0.065 5.8e+02 0.3 0.6 158 182 230 253 229 260 0.77 S-layer like family, C-terminal region Y1_Tnp PF01797.16 121 pAAFL01000020_00007 - 77 1.9e-13 50.5 2.2 1 1 1.3e-17 2.3e-13 50.3 2.2 2 57 13 70 12 76 0.89 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 69 pAAFL01000020_00008 - 415 2.2e-22 78.7 1.3 1 1 2.3e-25 4.6e-22 77.7 1.3 1 69 324 393 324 393 0.98 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 pAAFL01000020_00008 - 415 5.9e-13 49.1 2.4 1 1 7.1e-16 1.4e-12 47.9 2.4 10 118 187 302 172 304 0.76 Probable transposase HTH_OrfB_IS605 PF12323.8 47 pAAFL01000020_00008 - 415 3.8e-10 39.1 2.8 1 1 4.2e-13 8.4e-10 38.0 2.8 1 46 1 47 1 48 0.95 Helix-turn-helix domain HypA PF01155.19 112 pAAFL01000020_00008 - 415 0.022 14.8 0.4 1 1 2.7e-05 0.053 13.5 0.4 19 96 298 380 281 391 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 4_1_CTD PF05902.13 107 pAAFL01000020_00008 - 415 0.058 13.5 0.1 1 3 0.00018 0.35 11.0 0.0 35 96 47 108 16 115 0.83 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 pAAFL01000020_00008 - 415 0.058 13.5 0.1 2 3 2 4e+03 -2.1 0.0 25 37 178 190 158 231 0.62 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 pAAFL01000020_00008 - 415 0.058 13.5 0.1 3 3 2.8 5.5e+03 -2.5 0.0 51 66 333 348 331 355 0.83 4.1 protein C-terminal domain (CTD) Zn_ribbon_17 PF17120.5 58 pAAFL01000020_00008 - 415 0.071 12.7 0.5 1 1 6.8e-05 0.14 11.8 0.5 4 32 351 384 348 395 0.81 Zinc-ribbon, C4HC2 type DUF1161 PF06649.12 52 pAAFL01000020_00008 - 415 0.12 12.6 0.8 1 1 0.00016 0.32 11.2 0.8 3 32 270 299 269 311 0.89 Protein of unknown function (DUF1161) Prok-RING_1 PF14446.6 54 pAAFL01000020_00008 - 415 0.16 11.9 3.2 1 1 0.00018 0.36 10.8 3.2 2 33 349 383 348 388 0.83 Prokaryotic RING finger family 1 Spt4 PF06093.13 77 pAAFL01000020_00008 - 415 0.82 9.8 4.4 1 2 3.3 6.5e+03 -2.7 0.0 55 70 78 93 76 98 0.76 Spt4/RpoE2 zinc finger Spt4 PF06093.13 77 pAAFL01000020_00008 - 415 0.82 9.8 4.4 2 2 0.00041 0.81 9.8 2.2 2 30 352 382 351 393 0.79 Spt4/RpoE2 zinc finger DUF3492 PF11997.8 268 pAAFL01000020_00009 - 684 0.2 11.4 2.9 1 1 5.7e-05 0.51 10.0 2.9 33 164 64 199 59 210 0.76 Domain of unknown function (DUF3492) CLZ PF16526.5 71 pAAFL01000020_00009 - 684 1.1 9.7 4.8 1 2 0.01 92 3.5 0.6 30 58 122 150 104 162 0.78 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CLZ PF16526.5 71 pAAFL01000020_00009 - 684 1.1 9.7 4.8 2 2 0.0012 11 6.4 0.2 22 56 530 564 522 570 0.86 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Lipase_3 PF01764.25 142 pAAFL01000020_00010 - 1247 2.5e-07 30.7 0.0 1 1 1.9e-10 8.6e-07 28.9 0.0 39 105 189 249 156 265 0.70 Lipase (class 3) PGAP1 PF07819.13 231 pAAFL01000020_00010 - 1247 0.00063 19.5 2.0 1 3 5.6e-07 0.0025 17.6 0.0 63 133 187 254 143 315 0.75 PGAP1-like protein PGAP1 PF07819.13 231 pAAFL01000020_00010 - 1247 0.00063 19.5 2.0 2 3 0.76 3.4e+03 -2.5 0.7 50 95 539 579 506 580 0.68 PGAP1-like protein PGAP1 PF07819.13 231 pAAFL01000020_00010 - 1247 0.00063 19.5 2.0 3 3 0.21 9.6e+02 -0.7 0.0 164 192 998 1026 987 1047 0.80 PGAP1-like protein Abhydrolase_6 PF12697.7 220 pAAFL01000020_00010 - 1247 0.084 13.5 0.0 1 1 2.9e-05 0.13 12.8 0.0 62 86 201 228 162 261 0.74 Alpha/beta hydrolase family Thioesterase PF00975.20 231 pAAFL01000020_00010 - 1247 0.18 11.9 0.0 1 1 9.8e-05 0.44 10.6 0.0 59 95 203 241 182 259 0.72 Thioesterase domain CitMHS PF03600.16 300 pAAFL01000020_00011 - 208 0.022 14.0 0.5 1 1 7.1e-06 0.025 13.8 0.5 147 214 4 101 1 117 0.79 Citrate transporter Ion_trans PF00520.31 245 pAAFL01000020_00011 - 208 0.88 8.7 13.1 1 1 0.00036 1.3 8.2 13.1 127 183 5 52 1 100 0.81 Ion transport protein DUF3810 PF12725.7 310 pAAFL01000020_00011 - 208 1.1 8.6 11.5 1 1 0.00036 1.3 8.3 11.5 19 86 8 75 1 178 0.59 Protein of unknown function (DUF3810) Spo7 PF03907.13 221 pAAFL01000020_00011 - 208 1.9 7.9 6.7 1 1 0.00087 3.1 7.2 6.7 33 91 16 69 12 178 0.68 Spo7-like protein DHHC PF01529.20 134 pAAFL01000020_00011 - 208 9.4 6.3 11.7 1 1 0.0049 18 5.5 11.7 47 111 7 68 3 96 0.67 DHHC palmitoyltransferase DUF3810 PF12725.7 310 pAAFL01000020_00013 - 212 0.0022 17.4 5.2 1 1 5.3e-07 0.0024 17.3 5.2 19 117 8 106 1 185 0.59 Protein of unknown function (DUF3810) CitMHS PF03600.16 300 pAAFL01000020_00013 - 212 0.036 13.3 0.3 1 1 7.3e-06 0.033 13.4 0.3 147 221 4 67 1 158 0.79 Citrate transporter Yip1 PF04893.17 172 pAAFL01000020_00013 - 212 0.2 11.4 5.8 1 1 6.4e-05 0.29 10.8 5.8 65 120 7 68 2 76 0.84 Yip1 domain Spo7 PF03907.13 221 pAAFL01000020_00013 - 212 2.1 7.7 10.6 1 1 0.0011 4.7 6.6 10.2 33 92 16 70 12 176 0.75 Spo7-like protein APH PF01636.23 240 pAAFL01000021_00001 - 151 3.6e-07 30.4 0.0 1 1 2.2e-11 3.9e-07 30.2 0.0 99 220 5 123 2 144 0.82 Phosphotransferase enzyme family Peptidase_C15 PF01470.17 202 pAAFL01000021_00002 - 139 1.3e-51 175.6 0.1 1 1 8.3e-56 1.5e-51 175.5 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase APH PF01636.23 240 pAAFL01000021_00003 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pAAFL01000021_00003 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pAAFL01000021_00003 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pAAFL01000021_00003 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pAAFL01000021_00003 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pAAFL01000021_00003 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase AAA_18 PF13238.6 130 pAAFL01000021_00004 - 181 3.4e-14 53.5 0.0 1 1 1.1e-16 4.5e-14 53.1 0.0 1 124 7 135 7 141 0.78 AAA domain CPT PF07931.12 174 pAAFL01000021_00004 - 181 5e-10 39.5 0.0 1 1 2.4e-12 9.9e-10 38.5 0.0 1 172 4 172 4 174 0.82 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 pAAFL01000021_00004 - 181 1.2e-09 38.5 0.0 1 1 4.4e-12 1.8e-09 37.9 0.0 2 136 7 144 6 146 0.80 AAA domain Zeta_toxin PF06414.12 199 pAAFL01000021_00004 - 181 1.5e-08 34.1 0.0 1 1 7.8e-11 3.2e-08 33.1 0.0 18 162 6 140 2 173 0.80 Zeta toxin AAA_28 PF13521.6 163 pAAFL01000021_00004 - 181 2.9e-06 27.6 0.1 1 2 2.7e-08 1.1e-05 25.7 0.0 2 65 7 74 6 85 0.72 AAA domain AAA_28 PF13521.6 163 pAAFL01000021_00004 - 181 2.9e-06 27.6 0.1 2 2 3.7 1.5e+03 -0.7 0.1 140 140 136 136 96 177 0.51 AAA domain AAA PF00004.29 132 pAAFL01000021_00004 - 181 5.6e-06 26.8 0.0 1 2 1.3e-07 5.5e-05 23.6 0.0 2 25 8 31 7 84 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pAAFL01000021_00004 - 181 5.6e-06 26.8 0.0 2 2 1.2 4.8e+02 1.1 0.0 104 131 108 135 92 136 0.83 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 137 pAAFL01000021_00004 - 181 2e-05 24.9 0.0 1 2 1.4e-07 5.9e-05 23.4 0.0 4 43 3 42 1 89 0.84 AAA domain AAA_22 PF13401.6 137 pAAFL01000021_00004 - 181 2e-05 24.9 0.0 2 2 4 1.6e+03 -0.7 0.0 62 82 121 140 90 178 0.65 AAA domain AAA_14 PF13173.6 131 pAAFL01000021_00004 - 181 5.9e-05 23.1 0.0 1 1 2.2e-07 8.8e-05 22.5 0.0 2 127 4 141 3 145 0.74 AAA domain AAA_17 PF13207.6 136 pAAFL01000021_00004 - 181 0.00012 22.5 0.1 1 1 1.3e-06 0.00052 20.5 0.1 1 128 10 131 10 139 0.74 AAA domain AAA_16 PF13191.6 170 pAAFL01000021_00004 - 181 0.00031 21.2 0.0 1 1 1.1e-06 0.00043 20.7 0.0 22 61 2 42 1 127 0.81 AAA ATPase domain DUF2075 PF09848.9 363 pAAFL01000021_00004 - 181 0.0012 18.2 0.2 1 1 4.3e-06 0.0018 17.6 0.1 2 27 5 32 4 68 0.83 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 146 pAAFL01000021_00004 - 181 0.0017 18.7 0.0 1 1 8.7e-06 0.0035 17.7 0.0 9 39 3 33 1 49 0.84 AAA domain KTI12 PF08433.10 272 pAAFL01000021_00004 - 181 0.0019 17.7 0.0 1 2 9.3e-06 0.0038 16.7 0.0 3 42 6 44 5 87 0.77 Chromatin associated protein KTI12 KTI12 PF08433.10 272 pAAFL01000021_00004 - 181 0.0019 17.7 0.0 2 2 5.4 2.2e+03 -2.2 0.0 263 263 137 137 104 174 0.57 Chromatin associated protein KTI12 AAA_30 PF13604.6 192 pAAFL01000021_00004 - 181 0.0023 17.7 0.2 1 1 9.6e-06 0.0039 16.9 0.2 17 40 3 26 1 39 0.84 AAA domain ABC_tran PF00005.27 137 pAAFL01000021_00004 - 181 0.0029 18.1 0.1 1 1 7.3e-06 0.003 18.1 0.0 9 51 2 43 1 170 0.86 ABC transporter AAA_24 PF13479.6 197 pAAFL01000021_00004 - 181 0.0039 16.9 0.1 1 1 1e-05 0.0042 16.8 0.1 3 32 5 39 3 163 0.82 AAA domain APS_kinase PF01583.20 158 pAAFL01000021_00004 - 181 0.004 17.1 0.0 1 2 0.00012 0.049 13.5 0.0 1 79 3 84 3 124 0.66 Adenylylsulphate kinase APS_kinase PF01583.20 158 pAAFL01000021_00004 - 181 0.004 17.1 0.0 2 2 0.42 1.7e+02 2.0 0.0 44 74 118 148 97 155 0.84 Adenylylsulphate kinase TIP49 PF06068.13 351 pAAFL01000021_00004 - 181 0.0061 15.8 0.2 1 2 4.7e-05 0.019 14.2 0.0 50 75 4 29 1 46 0.81 TIP49 P-loop domain TIP49 PF06068.13 351 pAAFL01000021_00004 - 181 0.0061 15.8 0.2 2 2 1.7 7e+02 -0.8 0.1 148 178 126 156 105 172 0.75 TIP49 P-loop domain ATPase PF06745.13 231 pAAFL01000021_00004 - 181 0.0075 15.6 0.7 1 2 3.9e-05 0.016 14.6 0.1 18 38 3 23 1 39 0.87 KaiC ATPase PF06745.13 231 pAAFL01000021_00004 - 181 0.0075 15.6 0.7 2 2 2.7 1.1e+03 -1.3 0.1 98 129 123 159 100 175 0.49 KaiC T2SSE PF00437.20 273 pAAFL01000021_00004 - 181 0.011 14.8 0.0 1 1 4.1e-05 0.017 14.2 0.0 130 154 5 29 1 71 0.87 Type II/IV secretion system protein NTPase_1 PF03266.15 168 pAAFL01000021_00004 - 181 0.012 15.5 0.5 1 2 8.3e-05 0.034 14.1 0.2 2 22 7 27 6 37 0.88 NTPase NTPase_1 PF03266.15 168 pAAFL01000021_00004 - 181 0.012 15.5 0.5 2 2 2.6 1.1e+03 -0.6 0.0 117 136 99 118 59 172 0.59 NTPase Viral_helicase1 PF01443.18 234 pAAFL01000021_00004 - 181 0.017 14.9 0.0 1 1 6.8e-05 0.028 14.2 0.0 1 60 7 75 7 88 0.65 Viral (Superfamily 1) RNA helicase ATPase_2 PF01637.18 233 pAAFL01000021_00004 - 181 0.018 14.9 0.1 1 2 0.0025 1 9.2 0.0 19 54 3 38 1 66 0.80 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pAAFL01000021_00004 - 181 0.018 14.9 0.1 2 2 0.1 41 4.0 0.1 48 97 102 150 92 179 0.53 ATPase domain predominantly from Archaea SRP54 PF00448.22 196 pAAFL01000021_00004 - 181 0.019 14.6 0.0 1 1 8.9e-05 0.036 13.7 0.0 3 40 6 42 4 46 0.81 SRP54-type protein, GTPase domain AAA_11 PF13086.6 261 pAAFL01000021_00004 - 181 0.022 14.6 0.0 1 2 0.00017 0.069 12.9 0.0 16 41 3 28 1 74 0.83 AAA domain AAA_11 PF13086.6 261 pAAFL01000021_00004 - 181 0.022 14.6 0.0 2 2 1.9 7.6e+02 -0.3 0.0 96 122 116 151 81 178 0.53 AAA domain Ploopntkinase1 PF18748.1 196 pAAFL01000021_00004 - 181 0.022 14.3 0.0 1 2 0.23 94 2.4 0.0 16 41 3 29 1 41 0.78 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 pAAFL01000021_00004 - 181 0.022 14.3 0.0 2 2 0.0011 0.46 10.0 0.0 93 164 72 143 56 154 0.81 P-loop Nucleotide Kinase1 RuvB_N PF05496.12 159 pAAFL01000021_00004 - 181 0.023 14.5 0.1 1 2 0.0002 0.08 12.7 0.0 36 59 7 30 3 46 0.86 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 pAAFL01000021_00004 - 181 0.023 14.5 0.1 2 2 3.7 1.5e+03 -1.2 0.0 96 114 111 129 104 167 0.72 Holliday junction DNA helicase RuvB P-loop domain MKT1_N PF12247.8 90 pAAFL01000021_00004 - 181 0.027 14.8 0.0 1 1 0.00025 0.1 13.0 0.0 14 52 39 75 35 149 0.89 Temperature dependent protein affecting M2 dsRNA replication AAA_25 PF13481.6 194 pAAFL01000021_00004 - 181 0.028 14.0 0.1 1 2 0.00017 0.071 12.7 0.1 32 54 3 25 1 28 0.88 AAA domain AAA_25 PF13481.6 194 pAAFL01000021_00004 - 181 0.028 14.0 0.1 2 2 8.4 3.4e+03 -2.6 0.0 119 174 57 74 31 84 0.49 AAA domain DnaB_C PF03796.15 255 pAAFL01000021_00004 - 181 0.039 13.3 0.4 1 2 0.00021 0.084 12.2 0.0 17 47 2 32 1 41 0.84 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pAAFL01000021_00004 - 181 0.039 13.3 0.4 2 2 3.1 1.3e+03 -1.5 0.1 84 91 136 143 98 179 0.39 DnaB-like helicase C terminal domain NB-ARC PF00931.22 252 pAAFL01000021_00004 - 181 0.04 13.1 0.0 1 1 0.00018 0.073 12.3 0.0 21 47 5 30 1 46 0.84 NB-ARC domain Hydin_ADK PF17213.3 198 pAAFL01000021_00004 - 181 0.041 14.2 1.1 1 1 0.00013 0.054 13.8 0.2 2 22 7 27 6 31 0.92 Hydin Adenylate kinase-like domain NACHT PF05729.12 166 pAAFL01000021_00004 - 181 0.042 13.8 0.0 1 1 0.00017 0.07 13.0 0.0 1 31 5 35 5 74 0.75 NACHT domain ArsA_ATPase PF02374.15 305 pAAFL01000021_00004 - 181 0.047 12.9 0.1 1 2 0.00024 0.099 11.8 0.0 2 44 5 46 4 84 0.80 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 pAAFL01000021_00004 - 181 0.047 12.9 0.1 2 2 4.8 2e+03 -2.3 0.0 162 172 137 147 110 174 0.48 Anion-transporting ATPase Rad17 PF03215.15 186 pAAFL01000021_00004 - 181 0.051 13.5 0.0 1 2 0.0004 0.16 11.9 0.0 45 69 4 28 1 41 0.87 Rad17 P-loop domain Rad17 PF03215.15 186 pAAFL01000021_00004 - 181 0.051 13.5 0.0 2 2 3.8 1.5e+03 -1.1 0.0 113 146 110 145 96 169 0.62 Rad17 P-loop domain RNA_helicase PF00910.22 107 pAAFL01000021_00004 - 181 0.055 13.9 0.0 1 1 0.00023 0.095 13.1 0.0 1 35 7 42 7 77 0.71 RNA helicase Sigma54_activat PF00158.26 168 pAAFL01000021_00004 - 181 0.056 13.2 0.0 1 1 0.00025 0.1 12.3 0.0 25 67 7 56 1 89 0.73 Sigma-54 interaction domain AAA_7 PF12775.7 181 pAAFL01000021_00004 - 181 0.069 12.7 0.5 1 1 0.0003 0.12 11.9 0.0 31 64 2 35 1 47 0.83 P-loop containing dynein motor region IstB_IS21 PF01695.17 178 pAAFL01000021_00004 - 181 0.076 12.7 0.1 1 2 0.00042 0.17 11.6 0.0 48 70 5 27 1 47 0.84 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pAAFL01000021_00004 - 181 0.076 12.7 0.1 2 2 7.9 3.2e+03 -2.3 0.0 72 101 100 130 97 137 0.52 IstB-like ATP binding protein PhoH PF02562.16 205 pAAFL01000021_00004 - 181 0.096 12.1 0.1 1 1 0.00045 0.18 11.2 0.1 18 43 3 28 1 36 0.81 PhoH-like protein Ploopntkinase3 PF18751.1 185 pAAFL01000021_00004 - 181 0.14 12.0 0.5 1 2 0.00099 0.4 10.6 0.0 3 33 4 34 1 49 0.80 P-loop Nucleotide Kinase3 Ploopntkinase3 PF18751.1 185 pAAFL01000021_00004 - 181 0.14 12.0 0.5 2 2 5.6 2.3e+03 -1.7 0.0 108 144 101 138 94 156 0.66 P-loop Nucleotide Kinase3 AAA_3 PF07726.11 131 pAAFL01000021_00004 - 181 0.15 11.9 0.1 1 2 0.0011 0.43 10.4 0.0 2 29 7 34 6 43 0.82 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 131 pAAFL01000021_00004 - 181 0.15 11.9 0.1 2 2 6.2 2.5e+03 -1.8 0.0 76 91 130 145 117 171 0.68 ATPase family associated with various cellular activities (AAA) PG_binding_3 PF09374.10 76 pAAFL01000021_00004 - 181 0.18 12.1 0.4 1 2 0.71 2.9e+02 1.8 0.0 26 63 17 57 8 78 0.70 Predicted Peptidoglycan domain PG_binding_3 PF09374.10 76 pAAFL01000021_00004 - 181 0.18 12.1 0.4 2 2 0.0054 2.2 8.6 0.0 13 28 78 93 65 135 0.82 Predicted Peptidoglycan domain Cytidylate_kin2 PF13189.6 179 pAAFL01000021_00004 - 181 0.29 11.2 2.2 1 2 0.04 16 5.6 0.2 1 22 6 27 6 33 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 pAAFL01000021_00004 - 181 0.29 11.2 2.2 2 2 0.041 17 5.5 0.1 108 147 99 138 39 143 0.80 Cytidylate kinase-like family TnpV PF14198.6 112 pAAFL01000021_00005 - 114 3.3e-41 139.8 0.5 1 1 2e-45 3.6e-41 139.6 0.5 1 112 4 112 4 112 0.99 Transposon-encoded protein TnpV DUF4368 PF14287.6 67 pAAFL01000021_00006 - 628 3.6e-23 81.6 2.1 1 1 3.9e-26 1.2e-22 80.0 2.1 2 66 472 537 471 538 0.92 Domain of unknown function (DUF4368) Recombinase PF07508.13 104 pAAFL01000021_00006 - 628 3.6e-22 78.7 0.7 1 2 2.6 7.8e+03 -2.7 0.0 8 32 133 157 132 173 0.80 Recombinase Recombinase PF07508.13 104 pAAFL01000021_00006 - 628 3.6e-22 78.7 0.7 2 2 4.6e-25 1.4e-21 76.9 0.2 1 101 183 303 183 305 0.96 Recombinase Resolvase PF00239.21 146 pAAFL01000021_00006 - 628 5.2e-21 75.3 0.1 1 3 1.7e-24 5.2e-21 75.3 0.1 2 146 9 161 8 161 0.90 Resolvase, N terminal domain Resolvase PF00239.21 146 pAAFL01000021_00006 - 628 5.2e-21 75.3 0.1 2 3 0.18 5.4e+02 0.6 2.3 21 62 380 422 375 521 0.78 Resolvase, N terminal domain Resolvase PF00239.21 146 pAAFL01000021_00006 - 628 5.2e-21 75.3 0.1 3 3 1.2 3.6e+03 -2.1 1.6 123 142 579 598 549 602 0.65 Resolvase, N terminal domain Zn_ribbon_recom PF13408.6 58 pAAFL01000021_00006 - 628 1.4e-12 47.9 2.6 1 1 1.5e-15 4.3e-12 46.3 2.6 1 58 318 380 318 380 0.84 Recombinase zinc beta ribbon domain Xrn1_D3 PF18194.1 71 pAAFL01000021_00006 - 628 0.14 12.2 0.7 1 2 0.00013 0.38 10.9 0.1 2 28 376 402 375 412 0.91 Exoribonuclease 1 Domain-3 Xrn1_D3 PF18194.1 71 pAAFL01000021_00006 - 628 0.14 12.2 0.7 2 2 4 1.2e+04 -3.5 0.1 33 50 464 481 458 484 0.74 Exoribonuclease 1 Domain-3 Snapin_Pallidin PF14712.6 90 pAAFL01000021_00006 - 628 1.2 9.6 6.0 1 3 6 1.8e+04 -3.8 0.0 33 51 29 47 24 54 0.68 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 pAAFL01000021_00006 - 628 1.2 9.6 6.0 2 3 0.0043 13 6.3 0.2 46 78 397 429 383 435 0.78 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 pAAFL01000021_00006 - 628 1.2 9.6 6.0 3 3 0.0082 24 5.4 0.2 26 56 455 486 452 504 0.82 Snapin/Pallidin IMS PF00817.20 150 pAAFL01000021_00007 - 126 1.1e-06 28.7 0.1 1 1 1.7e-10 3e-06 27.3 0.1 1 80 10 122 10 126 0.71 impB/mucB/samB family HTH_3 PF01381.22 55 pAAFL01000021_00009 - 44 8.4e-07 29.0 0.0 1 1 1e-09 9.1e-07 28.9 0.0 1 33 9 41 9 44 0.95 Helix-turn-helix HTH_26 PF13443.6 63 pAAFL01000021_00009 - 44 0.00022 21.6 0.0 1 1 2.7e-07 0.00024 21.4 0.0 2 34 9 41 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 pAAFL01000021_00009 - 44 0.0007 19.1 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding HTH_19 PF12844.7 65 pAAFL01000021_00009 - 44 0.0012 18.8 0.0 1 1 1.4e-06 0.0013 18.8 0.0 4 37 9 42 7 44 0.91 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 pAAFL01000021_00009 - 44 0.002 18.0 0.1 1 1 2.6e-06 0.0023 17.7 0.1 1 32 9 41 9 43 0.84 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 pAAFL01000021_00009 - 44 0.002 17.9 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 pAAFL01000021_00009 - 44 0.0035 17.4 0.3 1 1 5.7e-06 0.0052 16.8 0.3 25 46 1 22 1 41 0.89 ENT domain HTH_31 PF13560.6 64 pAAFL01000021_00009 - 44 0.0089 16.4 0.0 1 1 1.2e-05 0.011 16.1 0.0 12 38 15 41 9 43 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 pAAFL01000021_00009 - 44 0.009 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 pAAFL01000021_00009 - 44 0.0098 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 pAAFL01000021_00009 - 44 0.013 14.9 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 pAAFL01000021_00009 - 44 0.019 14.9 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 pAAFL01000021_00009 - 44 0.02 14.7 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain HTH_AsnC-type PF13404.6 42 pAAFL01000021_00009 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain Phage_CI_repr PF07022.13 65 pAAFL01000021_00009 - 44 0.03 14.4 0.0 1 1 3.7e-05 0.033 14.3 0.0 3 33 9 38 7 41 0.84 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4 PF04545.16 50 pAAFL01000021_00009 - 44 0.034 13.7 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 HTH_17 PF12728.7 51 pAAFL01000021_00009 - 44 0.081 13.1 0.1 1 2 0.018 16 5.8 0.0 4 16 9 21 9 26 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 pAAFL01000021_00009 - 44 0.081 13.1 0.1 2 2 0.0085 7.6 6.8 0.0 6 26 22 42 19 44 0.78 Helix-turn-helix domain MerR PF00376.23 38 pAAFL01000021_00009 - 44 0.085 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 pAAFL01000021_00009 - 44 0.085 12.7 0.0 2 2 0.01 9.3 6.1 0.0 4 17 22 35 21 41 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 pAAFL01000021_00009 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 pAAFL01000021_00009 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain DUF5601 PF18151.1 65 pAAFL01000021_00011 - 118 0.038 14.3 0.2 1 1 7e-06 0.063 13.6 0.2 14 55 5 47 1 48 0.88 Domain of unknown function (DUF5601) DUF1640 PF07798.11 175 pAAFL01000021_00011 - 118 0.58 10.2 7.1 1 2 1.4e-05 0.12 12.4 2.4 52 100 26 77 9 86 0.83 Protein of unknown function (DUF1640) DUF1640 PF07798.11 175 pAAFL01000021_00011 - 118 0.58 10.2 7.1 2 2 0.068 6.1e+02 0.3 0.3 148 169 82 103 74 110 0.65 Protein of unknown function (DUF1640) Sigma_reg_N PF13800.6 90 pAAFL01000021_00012 - 37 0.13 12.6 0.3 1 1 7.1e-06 0.13 12.6 0.3 15 44 5 34 4 37 0.89 Sigma factor regulator N-terminal CCDC-167 PF15188.6 84 pAAFL01000021_00013 - 137 0.002 18.4 0.4 1 1 1.1e-06 0.0033 17.7 0.4 37 79 77 119 21 121 0.77 Coiled-coil domain-containing protein 167 DUF3461 PF11944.8 125 pAAFL01000021_00013 - 137 0.015 15.4 3.5 1 1 1.3e-05 0.04 14.0 3.5 23 124 7 100 2 101 0.83 Protein of unknown function (DUF3461) HSBP1 PF06825.12 51 pAAFL01000021_00013 - 137 0.033 14.0 0.1 1 2 0.027 80 3.2 0.0 28 43 61 76 46 78 0.86 Heat shock factor binding protein 1 HSBP1 PF06825.12 51 pAAFL01000021_00013 - 137 0.033 14.0 0.1 2 2 0.00073 2.2 8.2 0.0 17 42 79 104 77 109 0.83 Heat shock factor binding protein 1 Streptin-Immun PF11083.8 93 pAAFL01000021_00013 - 137 0.052 14.0 0.6 1 2 0.35 1.1e+03 0.2 0.1 63 82 40 59 20 68 0.62 Lantibiotic streptin immunity protein Streptin-Immun PF11083.8 93 pAAFL01000021_00013 - 137 0.052 14.0 0.6 2 2 6.7e-05 0.2 12.1 0.1 42 81 68 107 63 115 0.87 Lantibiotic streptin immunity protein DUF4164 PF13747.6 89 pAAFL01000021_00013 - 137 0.1 12.9 0.4 1 1 0.00011 0.32 11.3 0.2 14 42 77 106 62 109 0.77 Domain of unknown function (DUF4164) Trimer_CC PF08954.11 52 pAAFL01000021_00013 - 137 0.14 11.7 0.1 1 2 0.0033 9.8 5.8 0.0 41 52 79 90 52 90 0.70 Trimerisation motif Trimer_CC PF08954.11 52 pAAFL01000021_00013 - 137 0.14 11.7 0.1 2 2 0.19 5.8e+02 0.2 0.0 41 49 90 98 89 100 0.83 Trimerisation motif YafQ_toxin PF15738.5 88 pAAFL01000021_00018 - 106 1.6e-26 92.4 3.7 1 1 4.7e-30 2.1e-26 92.0 3.7 1 87 20 106 20 106 0.95 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 pAAFL01000021_00018 - 106 1.9e-06 28.4 0.6 1 1 4.9e-10 2.2e-06 28.2 0.6 6 89 23 105 18 106 0.80 ParE toxin of type II toxin-antitoxin system, parDE Ribosomal_S2 PF00318.20 215 pAAFL01000021_00018 - 106 0.0042 16.3 0.9 1 1 1.2e-06 0.0053 16.0 0.9 98 164 27 94 21 99 0.83 Ribosomal protein S2 ParE-like_toxin PF15781.5 87 pAAFL01000021_00018 - 106 0.017 15.1 1.6 1 1 7.8e-06 0.035 14.1 1.6 5 82 26 105 22 106 0.79 ParE-like toxin of type II bacterial toxin-antitoxin system WGR PF05406.15 80 pAAFL01000021_00023 - 75 2.4e-07 30.7 0.6 1 1 3.1e-11 2.7e-07 30.5 0.6 3 73 4 74 2 75 0.87 WGR domain Cadherin_pro PF08758.11 90 pAAFL01000021_00023 - 75 0.017 15.3 0.0 1 1 2.3e-06 0.021 15.0 0.0 15 45 26 56 12 62 0.81 Cadherin prodomain like FlaC_arch PF05377.11 55 pAAFL01000021_00024 - 76 0.0083 16.5 2.3 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pAAFL01000021_00024 - 76 0.0083 16.5 2.3 2 2 4.6e-07 0.0083 16.5 2.3 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) Phage_integrase PF00589.22 172 pAAFL01000021_00025 - 312 5.1e-24 85.0 0.5 1 1 2.8e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 pAAFL01000021_00025 - 312 2.3e-05 24.6 3.9 1 3 1.4e-07 0.00043 20.5 1.9 1 79 16 99 16 99 0.88 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pAAFL01000021_00025 - 312 2.3e-05 24.6 3.9 2 3 0.0015 4.4 7.7 0.0 13 35 80 102 76 109 0.89 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pAAFL01000021_00025 - 312 2.3e-05 24.6 3.9 3 3 3.1 9.3e+03 -3.0 0.0 36 54 123 141 114 151 0.54 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 pAAFL01000021_00025 - 312 0.00011 22.4 4.6 1 3 3.8e-08 0.00011 22.4 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pAAFL01000021_00025 - 312 0.00011 22.4 4.6 2 3 0.91 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pAAFL01000021_00025 - 312 0.00011 22.4 4.6 3 3 1.8 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phyto-Amp PF15438.6 195 pAAFL01000021_00025 - 312 0.0094 15.8 0.3 1 1 5.8e-06 0.017 14.9 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma YbjN PF10722.9 127 pAAFL01000021_00025 - 312 0.011 15.8 0.3 1 2 0.00017 0.51 10.4 0.1 38 77 96 135 93 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 pAAFL01000021_00025 - 312 0.011 15.8 0.3 2 2 0.04 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator Phage_int_SAM_3 PF14659.6 58 pAAFL01000021_00025 - 312 0.028 14.7 3.2 1 1 3.6e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain SprT-like PF10263.9 113 pAAFL01000021_00028 - 424 0.056 13.3 0.1 1 1 1.5e-05 0.13 12.1 0.1 58 93 316 353 294 360 0.81 SprT-like family Peptidase_M78 PF06114.13 123 pAAFL01000021_00028 - 424 0.077 12.9 0.1 1 1 2e-05 0.18 11.8 0.1 6 63 288 347 285 365 0.76 IrrE N-terminal-like domain CtsR_C PF17727.1 72 pAAFL01000022_00001 - 156 0.086 13.0 0.1 1 2 0.00084 7.5 6.8 0.0 3 37 61 95 58 102 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pAAFL01000022_00001 - 156 0.086 13.0 0.1 2 2 0.0072 64 3.8 0.0 28 48 104 124 103 138 0.85 CtsR C-terminal dimerization domain Ribosomal_L44 PF00935.19 76 pAAFL01000022_00001 - 156 0.13 12.8 0.6 1 1 3e-05 0.27 11.7 0.6 54 73 21 40 16 41 0.91 Ribosomal protein L44 Flp1_like PF16982.5 49 pAAFL01000022_00002 - 130 0.015 14.7 2.9 1 2 8.3e-07 0.015 14.7 2.9 17 43 15 41 14 43 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pAAFL01000022_00002 - 130 0.015 14.7 2.9 2 2 0.44 8e+03 -3.6 0.9 17 29 89 101 87 105 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 pAAFL01000022_00003 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pAAFL01000022_00003 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pAAFL01000022_00003 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pAAFL01000022_00003 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pAAFL01000022_00003 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pAAFL01000022_00003 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pAAFL01000022_00003 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pAAFL01000022_00003 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pAAFL01000022_00003 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 pAAFL01000022_00004 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pAAFL01000022_00004 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pAAFL01000022_00004 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pAAFL01000022_00004 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pAAFL01000022_00004 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pAAFL01000022_00004 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pAAFL01000022_00005 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pAAFL01000022_00005 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pAAFL01000022_00006 - 186 0.00012 22.0 0.6 1 2 2.7e-07 0.0016 18.4 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 pAAFL01000022_00006 - 186 0.00012 22.0 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pAAFL01000022_00006 - 186 0.0018 18.3 0.9 1 1 2.4e-06 0.014 15.4 0.9 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pAAFL01000022_00006 - 186 0.014 14.8 0.0 1 1 3.2e-06 0.019 14.4 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase RHH_7 PF16777.5 74 pAAFL01000022_00007 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 pAAFL01000022_00007 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal SNF2_N PF00176.23 350 pAAFL01000022_00008 - 1870 2.3e-16 59.5 1.6 1 3 1.3e-19 4e-16 58.7 0.1 56 245 955 1211 873 1252 0.73 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pAAFL01000022_00008 - 1870 2.3e-16 59.5 1.6 2 3 1.1 3.2e+03 -3.5 0.0 245 282 1407 1449 1402 1464 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pAAFL01000022_00008 - 1870 2.3e-16 59.5 1.6 3 3 0.99 3e+03 -3.4 0.0 171 200 1816 1846 1795 1858 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 pAAFL01000022_00008 - 1870 8.8e-08 32.3 8.7 1 3 2.7 7.9e+03 -3.3 0.2 54 75 587 628 576 720 0.55 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pAAFL01000022_00008 - 1870 8.8e-08 32.3 8.7 2 3 3e-11 8.8e-08 32.3 8.7 2 148 938 1150 937 1181 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pAAFL01000022_00008 - 1870 8.8e-08 32.3 8.7 3 3 0.44 1.3e+03 -0.8 5.7 33 121 1736 1842 1683 1868 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pAAFL01000022_00008 - 1870 8.3e-07 29.3 0.2 1 2 0.2 6.1e+02 0.8 0.0 45 73 1015 1043 967 1048 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pAAFL01000022_00008 - 1870 8.3e-07 29.3 0.2 2 2 1.6e-08 4.7e-05 23.7 0.0 40 111 1449 1522 1407 1522 0.79 Helicase conserved C-terminal domain Eco57I PF07669.11 106 pAAFL01000022_00008 - 1870 2e-05 25.1 0.7 1 2 7e-08 0.00021 21.8 0.2 3 103 310 410 308 413 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pAAFL01000022_00008 - 1870 2e-05 25.1 0.7 2 2 1.6 4.9e+03 -1.9 0.0 41 80 599 638 583 657 0.65 Eco57I restriction-modification methylase DEAD PF00270.29 176 pAAFL01000022_00008 - 1870 2e-05 24.4 2.5 1 2 4.9e-07 0.0014 18.4 0.5 2 108 942 1047 941 1144 0.60 DEAD/DEAH box helicase DEAD PF00270.29 176 pAAFL01000022_00008 - 1870 2e-05 24.4 2.5 2 2 0.14 4.1e+02 0.6 0.1 119 150 1821 1854 1770 1866 0.69 DEAD/DEAH box helicase BST2 PF16716.5 91 pAAFL01000022_00008 - 1870 3.6 8.3 6.2 1 2 0.0048 14 6.3 2.7 48 87 1066 1105 1055 1109 0.89 Bone marrow stromal antigen 2 BST2 PF16716.5 91 pAAFL01000022_00008 - 1870 3.6 8.3 6.2 2 2 0.47 1.4e+03 -0.1 0.1 59 80 1782 1803 1769 1812 0.75 Bone marrow stromal antigen 2 GramPos_pilinBB PF16569.5 115 pAAFL01000022_00009 - 236 0.017 15.9 4.1 1 2 1e-05 0.19 12.6 1.9 56 113 16 74 2 75 0.79 Gram-positive pilin backbone subunit 2, Cna-B-like domain GramPos_pilinBB PF16569.5 115 pAAFL01000022_00009 - 236 0.017 15.9 4.1 2 2 0.0078 1.4e+02 3.3 0.0 23 66 113 157 95 189 0.77 Gram-positive pilin backbone subunit 2, Cna-B-like domain Peptidase_C39 PF03412.15 133 pAAFL01000022_00012 - 197 5e-18 65.2 0.0 1 1 1.1e-21 6.6e-18 64.8 0.0 2 124 33 162 32 176 0.81 Peptidase C39 family Peptidase_C70 PF12385.8 145 pAAFL01000022_00012 - 197 0.00014 21.8 0.0 1 1 3.5e-08 0.00021 21.3 0.0 12 131 38 147 22 158 0.80 Papain-like cysteine protease AvrRpt2 Peptidase_C39_2 PF13529.6 144 pAAFL01000022_00012 - 197 0.054 14.0 0.0 1 1 1.9e-05 0.11 13.0 0.0 6 143 36 143 31 144 0.72 Peptidase_C39 like family Dynamin_N PF00350.23 168 pAAFL01000022_00014 - 89 0.032 14.3 0.0 1 1 2.1e-06 0.038 14.1 0.0 11 48 15 54 12 76 0.79 Dynamin family DUF4299 PF14132.6 301 pAAFL01000023_00002 - 116 1.4e-08 34.5 0.1 1 1 1.8e-12 1.6e-08 34.3 0.1 189 300 12 110 5 111 0.87 Domain of unknown function (DUF4299) XPG_I PF00867.18 94 pAAFL01000023_00002 - 116 0.12 12.7 0.0 1 1 1.7e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region AHH PF14412.6 114 pAAFL01000023_00004 - 258 5.8e-17 61.8 2.0 1 1 1.3e-20 1.1e-16 60.9 2.0 8 111 153 239 148 243 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH RRF PF01765.19 162 pAAFL01000023_00004 - 258 0.25 11.3 7.2 1 2 1.5e-05 0.13 12.2 1.5 122 156 161 196 125 199 0.78 Ribosome recycling factor RRF PF01765.19 162 pAAFL01000023_00004 - 258 0.25 11.3 7.2 2 2 0.018 1.6e+02 2.2 0.4 83 106 220 243 207 256 0.59 Ribosome recycling factor Imm59 PF15597.6 100 pAAFL01000023_00005 - 185 0.23 12.0 8.7 1 2 2.8e-05 0.51 10.9 1.8 28 85 25 84 20 93 0.82 Immunity protein 59 Imm59 PF15597.6 100 pAAFL01000023_00005 - 185 0.23 12.0 8.7 2 2 0.0019 34 5.0 1.5 6 86 87 176 83 184 0.65 Immunity protein 59 CobN-Mg_chel PF02514.16 1089 pAAFL01000023_00006 - 128 0.16 9.7 0.0 1 1 1e-05 0.19 9.5 0.0 299 369 36 100 24 109 0.71 CobN/Magnesium Chelatase Ntox24 PF15529.6 97 pAAFL01000023_00007 - 90 0.00052 20.3 0.6 1 1 4.7e-08 0.00084 19.6 0.6 17 94 8 74 2 77 0.78 Bacterial toxin 24 AHH PF14412.6 114 pAAFL01000023_00011 - 258 1e-15 57.8 1.5 1 1 1.1e-19 2e-15 56.9 1.5 8 111 153 239 148 243 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH Imm70 PF15601.6 131 pAAFL01000023_00013 - 137 2.7e-51 172.5 0.6 1 1 3.3e-55 3e-51 172.4 0.6 2 131 5 134 4 134 0.98 Immunity protein 70 Herpes_V23 PF01802.17 290 pAAFL01000023_00013 - 137 0.016 14.7 0.0 1 1 2.3e-06 0.021 14.3 0.0 63 122 37 103 32 108 0.85 Herpesvirus VP23 like capsid protein AbfS_sensor PF18225.1 65 pAAFL01000023_00014 - 322 0.067 13.1 0.1 1 1 1.1e-05 0.19 11.6 0.1 6 34 268 295 264 305 0.88 Sensor histidine kinase (AbfS) sensor domain DUF1574 PF07611.11 342 pAAFL01000023_00015 - 184 0.023 14.1 2.5 1 1 4.4e-06 0.027 13.8 2.5 199 323 39 162 4 165 0.83 Protein of unknown function (DUF1574) LPD7 PF18821.1 94 pAAFL01000023_00015 - 184 0.037 14.1 0.4 1 2 0.0072 43 4.3 0.1 30 80 55 110 19 121 0.61 Large polyvalent protein-associated domain 7 LPD7 PF18821.1 94 pAAFL01000023_00015 - 184 0.037 14.1 0.4 2 2 0.00055 3.3 7.9 0.1 35 65 124 157 117 161 0.76 Large polyvalent protein-associated domain 7 Imm59 PF15597.6 100 pAAFL01000023_00015 - 184 1.8 9.1 9.9 1 3 0.00027 1.6 9.2 2.8 28 74 25 73 20 95 0.84 Immunity protein 59 Imm59 PF15597.6 100 pAAFL01000023_00015 - 184 1.8 9.1 9.9 2 3 0.072 4.3e+02 1.5 1.4 15 47 73 108 69 142 0.56 Immunity protein 59 Imm59 PF15597.6 100 pAAFL01000023_00015 - 184 1.8 9.1 9.9 3 3 0.043 2.6e+02 2.2 1.1 39 62 124 149 88 183 0.63 Immunity protein 59 TNT PF14021.6 88 pAAFL01000023_00016 - 364 1.5e-15 57.5 0.0 1 2 6.2e-13 1.1e-08 35.5 0.0 1 53 238 298 238 304 0.87 Tuberculosis necrotizing toxin TNT PF14021.6 88 pAAFL01000023_00016 - 364 1.5e-15 57.5 0.0 2 2 5.1e-08 0.00092 19.7 0.0 53 88 329 363 313 363 0.91 Tuberculosis necrotizing toxin Ank_3 PF13606.6 31 pAAFL01000023_00019 - 312 2.9e-10 39.5 0.1 1 4 0.029 1e+02 4.0 0.0 8 26 73 93 71 97 0.81 Ankyrin repeat Ank_3 PF13606.6 31 pAAFL01000023_00019 - 312 2.9e-10 39.5 0.1 2 4 0.045 1.6e+02 3.4 0.0 12 29 144 160 137 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pAAFL01000023_00019 - 312 2.9e-10 39.5 0.1 3 4 2.5e-07 0.00091 19.5 0.0 2 30 168 195 167 196 0.95 Ankyrin repeat Ank_3 PF13606.6 31 pAAFL01000023_00019 - 312 2.9e-10 39.5 0.1 4 4 0.0037 13 6.7 0.0 3 30 207 234 205 235 0.89 Ankyrin repeat Ank_2 PF12796.7 83 pAAFL01000023_00019 - 312 1.5e-09 38.3 0.0 1 2 0.41 1.5e+03 -0.1 0.0 4 18 74 92 70 121 0.55 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pAAFL01000023_00019 - 312 1.5e-09 38.3 0.0 2 2 3.2e-12 1.1e-08 35.5 0.0 7 80 144 234 138 237 0.79 Ankyrin repeats (3 copies) Ank_4 PF13637.6 55 pAAFL01000023_00019 - 312 1.3e-05 25.6 0.1 1 3 0.99 3.6e+03 -1.3 0.0 10 21 73 89 66 98 0.52 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pAAFL01000023_00019 - 312 1.3e-05 25.6 0.1 2 3 3.2e-07 0.0011 19.4 0.0 13 55 146 188 134 188 0.83 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pAAFL01000023_00019 - 312 1.3e-05 25.6 0.1 3 3 0.076 2.7e+02 2.3 0.0 4 28 209 234 207 243 0.79 Ankyrin repeats (many copies) Ank PF00023.30 32 pAAFL01000023_00019 - 312 3.6e-05 24.0 0.0 1 3 0.034 1.2e+02 3.4 0.0 12 25 144 158 131 165 0.81 Ankyrin repeat Ank PF00023.30 32 pAAFL01000023_00019 - 312 3.6e-05 24.0 0.0 2 3 0.00068 2.5 8.7 0.0 2 31 168 198 167 199 0.87 Ankyrin repeat Ank PF00023.30 32 pAAFL01000023_00019 - 312 3.6e-05 24.0 0.0 3 3 0.0018 6.5 7.4 0.0 5 28 209 234 206 237 0.76 Ankyrin repeat Ank_5 PF13857.6 56 pAAFL01000023_00019 - 312 0.0063 16.8 0.3 1 5 2.5 8.8e+03 -2.8 0.0 42 52 50 60 48 61 0.76 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pAAFL01000023_00019 - 312 0.0063 16.8 0.3 2 5 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.81 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pAAFL01000023_00019 - 312 0.0063 16.8 0.3 3 5 0.064 2.3e+02 2.3 0.0 26 53 144 172 142 173 0.83 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pAAFL01000023_00019 - 312 0.0063 16.8 0.3 4 5 3.5e-05 0.13 12.7 0.0 9 48 162 200 153 202 0.83 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pAAFL01000023_00019 - 312 0.0063 16.8 0.3 5 5 4.1 1.5e+04 -3.5 0.0 37 53 228 242 224 243 0.46 Ankyrin repeats (many copies) Rapsyn_N PF10579.9 80 pAAFL01000025_00002 - 358 0.12 12.5 1.2 1 2 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 pAAFL01000025_00002 - 358 0.12 12.5 1.2 2 2 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region DZR PF12773.7 49 pAAFL01000025_00003 - 114 0.039 14.0 0.3 1 1 9.1e-06 0.054 13.5 0.3 13 37 5 38 2 43 0.91 Double zinc ribbon DiS_P_DiS PF06750.13 84 pAAFL01000025_00003 - 114 0.04 14.1 0.4 1 1 1.3e-05 0.077 13.1 0.4 29 72 6 49 2 59 0.83 Bacterial Peptidase A24 N-terminal domain zinc_ribbon_4 PF13717.6 36 pAAFL01000025_00003 - 114 0.6 10.1 4.6 1 2 0.054 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pAAFL01000025_00003 - 114 0.6 10.1 4.6 2 2 0.00011 0.64 10.0 0.4 3 14 30 41 29 45 0.88 zinc-ribbon domain Myc-LZ PF02344.15 31 pAAFL01000025_00004 - 34 0.045 13.9 0.4 1 1 3e-06 0.054 13.6 0.4 8 18 15 25 14 27 0.94 Myc leucine zipper domain DivIC PF04977.15 80 pAAFL01000025_00005 - 635 0.0014 18.3 0.2 1 5 8e-08 0.0014 18.3 0.2 23 78 35 90 31 92 0.94 Septum formation initiator DivIC PF04977.15 80 pAAFL01000025_00005 - 635 0.0014 18.3 0.2 2 5 0.19 3.3e+03 -2.1 3.7 24 50 259 285 248 295 0.58 Septum formation initiator DivIC PF04977.15 80 pAAFL01000025_00005 - 635 0.0014 18.3 0.2 3 5 0.48 8.6e+03 -3.4 0.3 40 57 376 392 375 393 0.79 Septum formation initiator DivIC PF04977.15 80 pAAFL01000025_00005 - 635 0.0014 18.3 0.2 4 5 0.4 7.1e+03 -3.1 2.3 21 41 439 459 431 484 0.61 Septum formation initiator DivIC PF04977.15 80 pAAFL01000025_00005 - 635 0.0014 18.3 0.2 5 5 0.17 3.1e+03 -2.0 0.1 16 35 614 633 609 635 0.77 Septum formation initiator Prok-TraM PF09228.10 102 pAAFL01000025_00007 - 254 0.072 13.5 0.0 1 1 2.9e-05 0.17 12.2 0.0 30 94 8 72 2 76 0.92 Prokaryotic Transcriptional repressor TraM DUF2345 PF10106.9 151 pAAFL01000025_00007 - 254 0.18 11.7 1.5 1 2 0.17 1e+03 -0.5 0.1 112 141 101 130 84 140 0.67 Uncharacterized protein conserved in bacteria (DUF2345) DUF2345 PF10106.9 151 pAAFL01000025_00007 - 254 0.18 11.7 1.5 2 2 0.00023 1.4 8.8 0.1 86 143 154 209 147 214 0.80 Uncharacterized protein conserved in bacteria (DUF2345) Flu_B_M2 PF04772.12 109 pAAFL01000025_00007 - 254 2.2 8.6 11.0 1 3 3e-05 0.18 12.1 0.4 43 101 36 94 29 97 0.90 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 pAAFL01000025_00007 - 254 2.2 8.6 11.0 2 3 0.035 2.1e+02 2.2 4.4 25 87 89 151 87 206 0.90 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 pAAFL01000025_00007 - 254 2.2 8.6 11.0 3 3 0.29 1.7e+03 -0.7 0.0 73 104 191 222 175 225 0.71 Influenza B matrix protein 2 (BM2) Y1_Tnp PF01797.16 121 pAAFL01000026_00001 - 158 8.8e-37 125.9 2.5 1 1 6.8e-41 1.2e-36 125.4 2.5 2 121 13 133 12 133 0.95 Transposase IS200 like PcfJ PF14284.6 144 pAAFL01000026_00002 - 112 7.7e-06 25.9 1.5 1 1 1.4e-09 8.6e-06 25.7 1.5 43 135 4 96 1 105 0.80 PcfJ-like protein NmrA PF05368.13 233 pAAFL01000026_00002 - 112 0.0093 15.5 0.3 1 1 1.9e-06 0.012 15.2 0.3 121 224 12 108 7 111 0.77 NmrA-like family DUF4060 PF13269.6 73 pAAFL01000026_00002 - 112 0.085 12.9 0.1 1 2 0.0092 55 3.9 0.0 19 38 32 51 14 57 0.88 Protein of unknown function (DUF4060) DUF4060 PF13269.6 73 pAAFL01000026_00002 - 112 0.085 12.9 0.1 2 2 0.0009 5.4 7.2 0.0 34 56 61 83 55 89 0.88 Protein of unknown function (DUF4060) GTP_EFTU PF00009.27 194 pAAFL01000026_00004 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pAAFL01000026_00004 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pAAFL01000026_00004 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pAAFL01000026_00004 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pAAFL01000026_00004 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pAAFL01000026_00004 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pAAFL01000026_00004 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pAAFL01000026_00004 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pAAFL01000026_00004 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pAAFL01000026_00004 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family DUF5442 PF17514.2 107 pAAFL01000026_00005 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pAAFL01000026_00005 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) AAA_31 PF13614.6 177 pAAFL01000027_00001 - 185 0.00011 22.2 0.6 1 2 2.3e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 pAAFL01000027_00001 - 185 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pAAFL01000027_00001 - 185 0.0021 18.1 0.8 1 1 3.1e-06 0.019 15.0 0.8 1 55 3 89 3 163 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pAAFL01000027_00001 - 185 0.014 14.8 0.0 1 1 3.2e-06 0.019 14.4 0.0 17 109 69 171 61 177 0.77 short chain dehydrogenase Put_DNA-bind_N PF06971.13 49 pAAFL01000027_00003 - 141 0.034 14.2 0.0 1 1 3.2e-06 0.058 13.4 0.0 11 34 4 27 3 30 0.94 Putative DNA-binding protein N-terminus RseC_MucC PF04246.12 130 pAAFL01000027_00005 - 93 9.1 6.3 6.3 1 2 0.085 1.5e+03 -1.0 0.1 78 96 5 22 3 31 0.58 Positive regulator of sigma(E), RseC/MucC RseC_MucC PF04246.12 130 pAAFL01000027_00005 - 93 9.1 6.3 6.3 2 2 0.00014 2.4 8.1 3.1 62 112 32 81 27 91 0.74 Positive regulator of sigma(E), RseC/MucC DUF2974 PF11187.8 224 pAAFL01000027_00007 - 202 0.00072 19.2 0.1 1 1 1.9e-07 0.0011 18.5 0.1 7 94 100 196 95 198 0.73 Protein of unknown function (DUF2974) DUF676 PF05057.14 219 pAAFL01000027_00007 - 202 0.044 13.3 0.0 1 1 1.4e-05 0.086 12.3 0.0 63 91 170 198 130 200 0.73 Putative serine esterase (DUF676) Lipase_3 PF01764.25 142 pAAFL01000027_00007 - 202 0.1 12.4 0.2 1 1 4.6e-05 0.28 11.1 0.1 50 75 172 196 121 197 0.77 Lipase (class 3) DUF2239 PF09998.9 184 pAAFL01000028_00001 - 117 0.081 12.7 0.7 1 1 1.7e-05 0.1 12.4 0.7 22 71 45 92 37 104 0.74 Uncharacterized protein conserved in bacteria (DUF2239) sCache_like PF16736.5 117 pAAFL01000028_00001 - 117 0.11 12.6 5.3 1 1 2.8e-05 0.16 12.0 5.3 30 91 40 100 37 108 0.73 Single Cache-like PepSY_2 PF13670.6 84 pAAFL01000028_00001 - 117 0.17 11.9 0.9 1 1 4.6e-05 0.28 11.2 0.9 41 80 41 78 38 82 0.84 Peptidase propeptide and YPEB domain Ank_3 PF13606.6 31 pAAFL01000028_00002 - 314 1.1e-09 37.7 0.3 1 4 0.018 63 4.6 0.0 8 26 73 93 71 97 0.83 Ankyrin repeat Ank_3 PF13606.6 31 pAAFL01000028_00002 - 314 1.1e-09 37.7 0.3 2 4 0.043 1.6e+02 3.4 0.0 12 29 145 161 133 163 0.80 Ankyrin repeat Ank_3 PF13606.6 31 pAAFL01000028_00002 - 314 1.1e-09 37.7 0.3 3 4 3.6e-06 0.013 16.0 0.0 2 30 169 196 168 197 0.94 Ankyrin repeat Ank_3 PF13606.6 31 pAAFL01000028_00002 - 314 1.1e-09 37.7 0.3 4 4 0.0014 5.1 8.0 0.0 1 30 207 236 207 237 0.92 Ankyrin repeat Ank_2 PF12796.7 83 pAAFL01000028_00002 - 314 4e-08 33.7 0.1 1 2 0.54 1.9e+03 -0.5 0.0 4 18 74 92 70 121 0.56 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pAAFL01000028_00002 - 314 4e-08 33.7 0.1 2 2 7.1e-11 2.6e-07 31.2 0.0 7 80 145 236 139 239 0.77 Ankyrin repeats (3 copies) Ank PF00023.30 32 pAAFL01000028_00002 - 314 0.00041 20.7 0.0 1 3 0.024 85 3.9 0.0 12 26 145 160 129 166 0.79 Ankyrin repeat Ank PF00023.30 32 pAAFL01000028_00002 - 314 0.00041 20.7 0.0 2 3 0.0043 15 6.2 0.0 3 31 170 199 169 200 0.85 Ankyrin repeat Ank PF00023.30 32 pAAFL01000028_00002 - 314 0.00041 20.7 0.0 3 3 0.0046 16 6.1 0.0 15 28 222 236 207 239 0.67 Ankyrin repeat Ank_5 PF13857.6 56 pAAFL01000028_00002 - 314 0.0021 18.3 0.1 1 3 2.5 8.9e+03 -2.8 0.0 42 52 50 60 48 61 0.76 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pAAFL01000028_00002 - 314 0.0021 18.3 0.1 2 3 0.62 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pAAFL01000028_00002 - 314 0.0021 18.3 0.1 3 3 8.1e-06 0.029 14.7 0.0 1 47 154 200 143 203 0.93 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pAAFL01000028_00002 - 314 0.0029 18.2 0.1 1 3 1.4 5e+03 -1.7 0.0 10 21 76 89 67 98 0.54 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pAAFL01000028_00002 - 314 0.0029 18.2 0.1 2 3 5.2e-05 0.18 12.4 0.1 14 55 148 189 135 189 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pAAFL01000028_00002 - 314 0.0029 18.2 0.1 3 3 0.094 3.4e+02 2.0 0.0 3 28 210 236 208 239 0.82 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 pAAFL01000028_00003 - 599 6.7e-08 32.7 0.0 1 3 0.47 4.2e+03 -1.9 2.0 15 43 364 392 356 395 0.65 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pAAFL01000028_00003 - 599 6.7e-08 32.7 0.0 2 3 7.4e-12 6.7e-08 32.7 0.0 13 84 417 490 398 492 0.81 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pAAFL01000028_00003 - 599 6.7e-08 32.7 0.0 3 3 2 1.8e+04 -4.0 0.7 46 58 499 512 497 524 0.52 Restriction endonuclease fold toxin 7 DUF2239 PF09998.9 184 pAAFL01000028_00003 - 599 2.2 8.1 9.1 1 2 0.00019 1.7 8.4 0.6 23 71 46 92 38 103 0.74 Uncharacterized protein conserved in bacteria (DUF2239) DUF2239 PF09998.9 184 pAAFL01000028_00003 - 599 2.2 8.1 9.1 2 2 0.0089 80 2.9 2.4 5 67 260 324 257 390 0.78 Uncharacterized protein conserved in bacteria (DUF2239) Ank_2 PF12796.7 83 pAAFL01000028_00004 - 315 4e-12 46.6 0.5 1 2 1.1e-07 0.00029 21.4 0.1 27 82 132 199 71 200 0.70 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pAAFL01000028_00004 - 315 4e-12 46.6 0.5 2 2 1.1e-10 2.9e-07 31.0 0.0 7 80 145 237 136 240 0.79 Ankyrin repeats (3 copies) Ank_3 PF13606.6 31 pAAFL01000028_00004 - 315 1.4e-10 40.4 0.3 1 4 0.025 63 4.6 0.0 8 26 73 93 71 97 0.83 Ankyrin repeat Ank_3 PF13606.6 31 pAAFL01000028_00004 - 315 1.4e-10 40.4 0.3 2 4 0.058 1.5e+02 3.5 0.0 12 29 145 161 135 163 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pAAFL01000028_00004 - 315 1.4e-10 40.4 0.3 3 4 6.6e-07 0.0017 18.7 0.0 1 30 169 197 169 198 0.95 Ankyrin repeat Ank_3 PF13606.6 31 pAAFL01000028_00004 - 315 1.4e-10 40.4 0.3 4 4 0.002 5.2 8.0 0.0 1 30 208 237 208 238 0.92 Ankyrin repeat Ank PF00023.30 32 pAAFL01000028_00004 - 315 1.4e-05 25.3 0.0 1 3 0.017 44 4.8 0.0 11 26 144 160 132 166 0.69 Ankyrin repeat Ank PF00023.30 32 pAAFL01000028_00004 - 315 1.4e-05 25.3 0.0 2 3 0.0003 0.76 10.3 0.0 1 31 169 200 169 201 0.87 Ankyrin repeat Ank PF00023.30 32 pAAFL01000028_00004 - 315 1.4e-05 25.3 0.0 3 3 0.0071 18 6.0 0.0 12 28 223 237 208 240 0.69 Ankyrin repeat Ank_4 PF13637.6 55 pAAFL01000028_00004 - 315 8.4e-05 23.0 0.2 1 3 1.7 4.3e+03 -1.5 0.0 10 21 76 89 67 102 0.57 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pAAFL01000028_00004 - 315 8.4e-05 23.0 0.2 2 3 7e-06 0.018 15.6 0.1 14 55 148 190 132 190 0.79 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pAAFL01000028_00004 - 315 8.4e-05 23.0 0.2 3 3 0.039 99 3.7 0.0 3 28 211 237 193 240 0.87 Ankyrin repeats (many copies) FAM25 PF15825.5 65 pAAFL01000028_00004 - 315 0.0056 17.0 1.3 1 2 0.00094 2.4 8.6 0.2 13 35 108 128 104 130 0.91 FAM25 family FAM25 PF15825.5 65 pAAFL01000028_00004 - 315 0.0056 17.0 1.3 2 2 0.0038 9.7 6.6 0.1 21 35 301 315 291 315 0.85 FAM25 family Ank_5 PF13857.6 56 pAAFL01000028_00004 - 315 0.095 13.0 0.1 1 4 3.5 8.9e+03 -2.8 0.0 42 52 50 60 48 61 0.76 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pAAFL01000028_00004 - 315 0.095 13.0 0.1 2 4 0.78 2e+03 -0.7 0.0 26 42 79 96 73 99 0.80 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pAAFL01000028_00004 - 315 0.095 13.0 0.1 3 4 0.17 4.3e+02 1.4 0.0 26 53 145 174 143 176 0.70 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pAAFL01000028_00004 - 315 0.095 13.0 0.1 4 4 0.0011 2.7 8.4 0.0 1 46 154 200 154 203 0.84 Ankyrin repeats (many copies) AHH PF14412.6 114 pAAFL01000028_00004 - 315 0.17 11.9 0.6 1 2 0.01 26 4.9 0.1 19 55 71 106 69 128 0.84 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH AHH PF14412.6 114 pAAFL01000028_00004 - 315 0.17 11.9 0.6 2 2 0.0089 23 5.1 0.0 71 92 294 314 249 315 0.89 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH Tox-REase-7 PF15649.6 86 pAAFL01000028_00005 - 162 1.3e-08 35.0 0.4 1 2 4e-12 2.4e-08 34.2 0.1 14 84 12 84 4 86 0.84 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pAAFL01000028_00005 - 162 1.3e-08 35.0 0.4 2 2 0.86 5.1e+03 -2.2 0.0 44 57 144 158 107 161 0.62 Restriction endonuclease fold toxin 7 Tn7_Tnp_TnsA_N PF08722.11 88 pAAFL01000028_00005 - 162 0.0021 18.2 1.0 1 2 4.8e-07 0.0029 17.8 0.1 30 75 26 68 8 74 0.75 TnsA endonuclease N terminal Tn7_Tnp_TnsA_N PF08722.11 88 pAAFL01000028_00005 - 162 0.0021 18.2 1.0 2 2 1.6 9.7e+03 -3.1 0.1 57 64 150 157 135 161 0.55 TnsA endonuclease N terminal VRR_NUC PF08774.11 108 pAAFL01000028_00005 - 162 0.041 13.9 0.0 1 2 2.1e-05 0.13 12.4 0.0 47 96 21 66 3 75 0.81 VRR-NUC domain VRR_NUC PF08774.11 108 pAAFL01000028_00005 - 162 0.041 13.9 0.0 2 2 0.27 1.6e+03 -0.8 0.0 35 56 85 106 61 121 0.69 VRR-NUC domain adh_short PF00106.25 195 pAAFL01000029_00001 - 117 0.0094 15.4 0.0 1 1 1.1e-06 0.01 15.3 0.0 20 109 3 102 1 112 0.79 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pAAFL01000029_00001 - 117 0.086 13.1 0.0 1 1 1.3e-05 0.12 12.7 0.0 20 78 14 69 1 79 0.80 Mur ligase family, glutamate ligase domain RHH_7 PF16777.5 74 pAAFL01000029_00002 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 pAAFL01000029_00002 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal PTS-HPr PF00381.19 82 pAAFL01000029_00003 - 44 0.17 12.1 0.0 1 1 1.1e-05 0.19 12.0 0.0 34 61 13 39 2 43 0.75 PTS HPr component phosphorylation site NYN PF01936.18 147 pAAFL01000029_00005 - 180 1.2e-09 38.8 0.0 1 1 2.3e-13 1.4e-09 38.6 0.0 57 123 71 146 15 161 0.81 NYN domain Peroxin-22 PF12827.7 113 pAAFL01000029_00005 - 180 0.014 15.3 0.5 1 1 4.7e-06 0.028 14.3 0.5 26 105 82 162 46 169 0.78 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 pAAFL01000029_00005 - 180 0.028 15.1 0.0 1 1 7.5e-06 0.045 14.4 0.0 57 103 99 142 72 142 0.87 PIN domain DUF2400 PF09674.10 227 pAAFL01000029_00006 - 217 0.26 11.2 4.0 1 2 0.0095 1.7e+02 2.0 0.1 38 75 49 86 42 96 0.78 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pAAFL01000029_00006 - 217 0.26 11.2 4.0 2 2 3.1e-05 0.56 10.2 0.8 25 110 96 181 92 209 0.74 Protein of unknown function (DUF2400) HTH_46 PF15977.5 68 pAAFL01000030_00002 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pAAFL01000030_00002 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pAAFL01000030_00002 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pAAFL01000030_00002 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pAAFL01000030_00002 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pAAFL01000030_00002 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pAAFL01000030_00002 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pAAFL01000030_00002 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pAAFL01000030_00002 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pAAFL01000030_00002 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pAAFL01000030_00002 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 pAAFL01000030_00003 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 pAAFL01000030_00003 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 pAAFL01000030_00003 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 pAAFL01000030_00003 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 pAAFL01000030_00003 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide AAA_25 PF13481.6 194 pAAFL01000031_00001 - 573 4.4e-15 55.8 0.0 1 1 5.2e-18 1e-14 54.5 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pAAFL01000031_00001 - 573 0.00028 20.3 0.0 1 2 9.2e-07 0.0018 17.6 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pAAFL01000031_00001 - 573 0.00028 20.3 0.0 2 2 0.015 31 3.8 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pAAFL01000031_00001 - 573 0.0021 17.8 0.0 1 2 6.9e-06 0.014 15.2 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pAAFL01000031_00001 - 573 0.0021 17.8 0.0 2 2 0.64 1.3e+03 -1.0 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pAAFL01000031_00001 - 573 0.007 15.7 0.0 1 2 3.5e-05 0.07 12.5 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 pAAFL01000031_00001 - 573 0.007 15.7 0.0 2 2 0.77 1.5e+03 -1.7 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pAAFL01000031_00001 - 573 0.02 15.3 0.3 1 3 0.00016 0.31 11.5 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pAAFL01000031_00001 - 573 0.02 15.3 0.3 2 3 0.37 7.3e+02 0.6 0.0 47 74 411 434 377 445 0.70 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pAAFL01000031_00001 - 573 0.02 15.3 0.3 3 3 4.3 8.5e+03 -2.9 0.0 23 49 495 523 475 527 0.69 ATPase family associated with various cellular activities (AAA) ApoC-I PF04691.12 61 pAAFL01000031_00001 - 573 0.13 12.2 3.2 1 3 0.0024 4.8 7.2 0.0 10 35 57 82 53 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pAAFL01000031_00001 - 573 0.13 12.2 3.2 2 3 0.21 4.2e+02 1.0 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pAAFL01000031_00001 - 573 0.13 12.2 3.2 3 3 0.19 3.9e+02 1.1 0.1 7 23 519 535 516 541 0.76 Apolipoprotein C-I (ApoC-1) CbiA PF01656.23 128 pAAFL01000031_00001 - 573 0.21 11.6 2.1 1 1 0.00045 0.89 9.6 2.1 1 29 35 63 35 548 0.91 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pAAFL01000031_00001 - 573 0.65 9.6 5.5 1 2 0.0064 13 5.5 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pAAFL01000031_00001 - 573 0.65 9.6 5.5 2 2 0.0083 17 5.1 1.5 16 28 517 529 511 531 0.91 VASP tetramerisation domain DUF1947 PF09183.10 66 pAAFL01000031_00001 - 573 0.65 10.3 6.4 1 2 0.15 2.9e+02 1.9 0.2 23 46 245 269 237 271 0.78 Domain of unknown function (DUF1947) DUF1947 PF09183.10 66 pAAFL01000031_00001 - 573 0.65 10.3 6.4 2 2 0.00081 1.6 9.1 1.7 7 42 517 550 515 567 0.87 Domain of unknown function (DUF1947) HicA_toxin PF07927.12 58 pAAFL01000031_00002 - 67 6.1e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, Endomucin PF07010.12 260 pAAFL01000032_00002 - 87 0.029 14.4 0.5 1 1 1.7e-06 0.03 14.3 0.5 176 206 51 81 23 86 0.86 Endomucin HicA_toxin PF07927.12 58 pAAFL01000032_00003 - 67 6.2e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, N-glycanase_N PF09112.10 173 pAAFL01000033_00001 - 175 0.016 15.0 0.1 1 1 2.4e-06 0.021 14.6 0.1 62 156 15 113 14 138 0.74 Peptide-N-glycosidase F, N terminal Phage_terminase PF10668.9 60 pAAFL01000033_00001 - 175 0.17 11.9 0.6 1 1 4.1e-05 0.37 10.9 0.6 11 31 80 101 79 104 0.84 Phage terminase small subunit RHH_7 PF16777.5 74 pAAFL01000033_00002 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 pAAFL01000033_00002 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal adh_short PF00106.25 195 pAAFL01000033_00003 - 117 0.0094 15.4 0.0 1 1 1.1e-06 0.01 15.3 0.0 20 109 3 102 1 112 0.79 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pAAFL01000033_00003 - 117 0.086 13.1 0.0 1 1 1.3e-05 0.12 12.7 0.0 20 78 14 69 1 79 0.80 Mur ligase family, glutamate ligase domain HicB_lk_antitox PF15919.5 123 pAAFL01000034_00001 - 89 4.4e-08 33.3 0.0 1 1 3.5e-12 6.3e-08 32.8 0.0 3 58 5 59 3 67 0.87 HicB_like antitoxin of bacterial toxin-antitoxin system Toprim_3 PF13362.6 95 pAAFL01000035_00001 - 283 1.3e-06 28.7 0.1 1 2 0.37 3.3e+03 -1.5 0.0 55 74 78 101 70 109 0.74 Toprim domain Toprim_3 PF13362.6 95 pAAFL01000035_00001 - 283 1.3e-06 28.7 0.1 2 2 4.9e-10 4.4e-06 27.0 0.0 3 74 189 268 187 277 0.89 Toprim domain Retrotrans_gag PF03732.17 96 pAAFL01000035_00001 - 283 0.0086 16.3 0.1 1 2 0.0068 61 4.0 0.2 41 60 67 87 37 100 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pAAFL01000035_00001 - 283 0.0086 16.3 0.1 2 2 9.9e-05 0.88 9.9 0.0 14 83 200 277 195 282 0.80 Retrotransposon gag protein Acetyltransf_7 PF13508.7 76 pAANQ01000006_00002 - 234 0.0008 19.8 0.1 1 1 3.3e-07 0.002 18.5 0.1 29 75 79 143 7 144 0.70 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pAANQ01000006_00002 - 234 0.021 15.1 0.1 1 1 8.6e-06 0.051 13.8 0.1 59 92 66 109 30 142 0.69 Acetyltransferase (GNAT) family GramPos_pilinBB PF16569.5 115 pAANQ01000006_00002 - 234 0.2 12.5 4.3 1 2 2.9e-05 0.17 12.7 1.7 56 111 16 72 2 76 0.74 Gram-positive pilin backbone subunit 2, Cna-B-like domain GramPos_pilinBB PF16569.5 115 pAANQ01000006_00002 - 234 0.2 12.5 4.3 2 2 0.26 1.6e+03 -0.1 0.0 20 62 128 174 112 199 0.60 Gram-positive pilin backbone subunit 2, Cna-B-like domain Relaxase PF03432.14 242 pAANQ01000006_00003 - 462 3.6e-10 39.9 7.4 1 2 2e-14 3.6e-10 39.9 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pAANQ01000006_00003 - 462 3.6e-10 39.9 7.4 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pAANQ01000006_00004 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pAANQ01000006_00004 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pAANQ01000006_00004 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pAANQ01000006_00004 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pAANQ01000006_00004 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pAANQ01000006_00004 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pAANQ01000006_00004 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pAANQ01000006_00004 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pAANQ01000006_00004 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pAANQ01000006_00004 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pAANQ01000006_00004 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 pAANQ01000006_00005 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 pAANQ01000006_00005 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 pAANQ01000006_00005 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 pAANQ01000006_00005 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 pAANQ01000006_00005 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 pAANQ01000006_00007 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pAANQ01000006_00007 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pAANQ01000006_00007 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pAANQ01000006_00007 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pAANQ01000006_00007 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pAANQ01000006_00008 - 97 0.0069 16.3 0.0 1 1 8.3e-07 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) Sdh_cyt PF01127.22 121 pAANQ01000006_00009 - 91 0.0079 16.2 2.8 1 1 1.2e-06 0.01 15.8 2.8 34 88 20 76 18 78 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2633 PF11119.8 57 pAANQ01000006_00009 - 91 1.1 9.3 4.2 1 1 0.00022 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pAANQ01000006_00011 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pAANQ01000006_00012 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pAANQ01000006_00013 - 597 1.6e-14 54.0 0.0 1 1 1.3e-17 3.3e-14 52.9 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pAANQ01000006_00013 - 597 0.00038 19.9 0.0 1 2 7.4e-07 0.0019 17.6 0.0 16 117 30 136 24 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pAANQ01000006_00013 - 597 0.00038 19.9 0.0 2 2 0.017 44 3.3 0.0 122 183 113 176 96 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pAANQ01000006_00013 - 597 0.0022 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pAANQ01000006_00013 - 597 0.0022 17.7 0.0 2 2 0.5 1.3e+03 -1.0 0.0 99 118 111 130 102 168 0.67 IstB-like ATP binding protein ATPase PF06745.13 231 pAANQ01000006_00013 - 597 0.009 15.4 0.0 1 2 2.3e-05 0.058 12.7 0.0 16 70 30 83 23 120 0.90 KaiC ATPase PF06745.13 231 pAANQ01000006_00013 - 597 0.009 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pAANQ01000006_00013 - 597 0.0093 16.4 0.2 1 2 8.6e-05 0.22 11.9 0.0 2 105 37 166 36 176 0.67 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pAANQ01000006_00013 - 597 0.0093 16.4 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pAANQ01000006_00013 - 597 0.18 11.9 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.91 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pAANQ01000006_00013 - 597 0.37 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pAANQ01000006_00013 - 597 0.37 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pAANQ01000006_00013 - 597 0.37 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 pAANQ01000006_00014 - 204 2.5e-34 118.5 0.6 1 1 7.4e-38 3.3e-34 118.1 0.6 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pAANQ01000006_00014 - 204 0.025 14.3 0.6 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pAANQ01000006_00014 - 204 0.025 14.3 0.6 2 3 0.0021 9.6 6.1 0.0 2 36 117 152 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pAANQ01000006_00014 - 204 0.025 14.3 0.6 3 3 0.0036 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pAANQ01000006_00014 - 204 0.05 13.6 4.8 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pAANQ01000006_00014 - 204 0.05 13.6 4.8 2 3 1.5 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pAANQ01000006_00014 - 204 0.05 13.6 4.8 3 3 0.024 1.1e+02 3.0 0.1 39 55 159 175 153 177 0.91 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pAANQ01000006_00014 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pAANQ01000006_00014 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pAANQ01000006_00014 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pAANQ01000006_00015 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pAANQ01000006_00015 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 TrbC PF04956.13 99 pAANQ01000006_00017 - 97 2.7e-15 56.4 6.5 1 1 3.1e-19 2.8e-15 56.3 6.5 16 99 12 95 1 95 0.91 TrbC/VIRB2 family DUF2062 PF09835.9 148 pAANQ01000006_00017 - 97 0.071 13.0 4.3 1 1 1.1e-05 0.096 12.5 4.2 76 135 45 97 19 97 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pAANQ01000006_00018 - 922 2.4e-51 174.8 0.3 1 1 9.2e-55 5.5e-51 173.6 0.3 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pAANQ01000006_00018 - 922 3.6e-21 75.2 0.8 1 1 1e-24 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pAANQ01000006_00018 - 922 0.046 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pAANQ01000006_00019 - 188 1.8e-31 108.5 0.0 1 1 3.2e-35 2.9e-31 107.9 0.0 2 88 24 122 23 122 0.89 Phage regulatory protein Rha (Phage_pRha) Y_Y_Y PF07495.13 66 pAANQ01000006_00019 - 188 0.1 12.6 0.3 1 1 2e-05 0.18 11.8 0.3 19 63 126 174 122 177 0.80 Y_Y_Y domain PBECR2 PF18810.1 119 pAANQ01000006_00020 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 SSB PF00436.25 104 pAANQ01000006_00021 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pAANQ01000006_00022 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pAANQ01000006_00022 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pAANQ01000006_00022 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pAANQ01000006_00022 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pAANQ01000006_00022 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pAANQ01000006_00022 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pAANQ01000006_00022 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pAANQ01000006_00023 - 329 1e-28 101.1 13.2 1 1 4.8e-32 1.4e-28 100.6 13.2 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pAANQ01000006_00023 - 329 0.0036 17.4 0.6 1 2 0.39 1.2e+03 -0.2 0.0 30 54 134 158 116 170 0.79 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pAANQ01000006_00023 - 329 0.0036 17.4 0.6 2 2 7.1e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 pAANQ01000006_00023 - 329 0.015 15.9 0.9 1 2 1.5 4.6e+03 -1.7 0.0 54 69 123 138 98 163 0.56 von Willebrand factor type A domain VWA_2 PF13519.6 107 pAANQ01000006_00023 - 329 0.015 15.9 0.9 2 2 1.2e-05 0.036 14.7 0.2 31 84 208 270 197 307 0.84 von Willebrand factor type A domain KMP11 PF03037.16 90 pAANQ01000006_00023 - 329 0.026 15.3 1.5 1 2 5.7e-05 0.17 12.7 0.0 8 56 91 139 88 174 0.82 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 pAANQ01000006_00023 - 329 0.026 15.3 1.5 2 2 0.7 2.1e+03 -0.4 0.5 58 58 304 304 228 329 0.63 Kinetoplastid membrane protein 11 Tissue_fac PF01108.17 107 pAANQ01000006_00023 - 329 0.03 14.2 0.1 1 1 2.1e-05 0.062 13.2 0.1 4 64 80 148 76 182 0.68 Tissue factor AATF-Che1 PF13339.6 139 pAANQ01000006_00023 - 329 0.34 11.6 11.8 1 2 0.021 64 4.2 0.7 48 135 107 145 42 182 0.59 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pAANQ01000006_00023 - 329 0.34 11.6 11.8 2 2 0.00014 0.41 11.3 4.5 49 116 225 306 205 328 0.68 Apoptosis antagonizing transcription factor TrbL PF04610.14 215 pAANQ01000006_00024 - 331 2.1e-30 106.1 33.3 1 2 3.5e-34 2.1e-30 106.1 33.3 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pAANQ01000006_00024 - 331 2.1e-30 106.1 33.3 2 2 0.62 3.7e+03 -2.6 0.1 79 85 287 293 256 327 0.51 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pAANQ01000006_00024 - 331 0.061 13.1 0.9 1 2 0.4 2.4e+03 -1.6 0.1 39 51 70 82 61 114 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pAANQ01000006_00024 - 331 0.061 13.1 0.9 2 2 3.6e-05 0.21 11.4 0.0 37 81 243 287 222 299 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 pAANQ01000006_00024 - 331 0.17 11.9 0.0 1 1 5.1e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) Trep_dent_lipo PF09710.10 397 pAANQ01000006_00025 - 54 0.034 13.1 1.0 1 1 5.2e-06 0.031 13.2 1.0 3 25 3 24 1 53 0.80 Treponema clustered lipoprotein (Trep_dent_lipo) La_HTH_kDCL PF18177.1 90 pAANQ01000006_00025 - 54 0.19 12.0 0.0 1 1 3.6e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain PsbT PF01405.17 29 pAANQ01000006_00025 - 54 1.1 9.1 5.2 1 1 0.00027 1.6 8.6 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pAANQ01000006_00026 - 219 1.6e-52 178.5 0.5 1 1 1.9e-56 1.7e-52 178.4 0.5 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pAANQ01000006_00026 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pAANQ01000006_00027 - 296 4.2e-56 190.0 1.7 1 1 1.1e-59 6.7e-56 189.3 1.7 2 211 31 271 30 271 0.92 Conjugal transfer protein TraE PF05309.11 182 pAANQ01000006_00027 - 296 0.022 14.2 0.1 1 1 6.6e-06 0.039 13.3 0.1 107 171 89 154 86 161 0.83 TraE protein Rho_RNA_bind PF07497.12 73 pAANQ01000006_00027 - 296 0.068 13.0 0.0 1 2 1.5 9.2e+03 -3.4 0.0 9 22 79 92 76 97 0.79 Rho termination factor, RNA-binding domain Rho_RNA_bind PF07497.12 73 pAANQ01000006_00027 - 296 0.068 13.0 0.0 2 2 3.3e-05 0.2 11.6 0.0 21 49 241 269 232 288 0.84 Rho termination factor, RNA-binding domain TrbI PF03743.14 187 pAANQ01000006_00028 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.4e+03 -3.4 0.3 136 154 140 166 120 172 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pAANQ01000006_00028 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pAANQ01000006_00028 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease T2SSE PF00437.20 273 pAANQ01000006_00029 - 335 1.5e-54 184.9 0.0 1 1 3.1e-57 1.7e-54 184.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pAANQ01000006_00029 - 335 7e-05 23.4 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pAANQ01000006_00029 - 335 0.00011 21.6 0.0 1 1 3.1e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pAANQ01000006_00029 - 335 0.00029 20.4 0.0 1 1 9.1e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pAANQ01000006_00029 - 335 0.0014 18.9 0.0 1 1 4.6e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 pAANQ01000006_00029 - 335 0.0014 18.4 0.0 1 1 4e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pAANQ01000006_00029 - 335 0.0025 17.6 0.0 1 1 9.5e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pAANQ01000006_00029 - 335 0.0035 17.3 0.0 1 1 1.3e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pAANQ01000006_00029 - 335 0.0055 15.7 0.0 1 1 1.4e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pAANQ01000006_00029 - 335 0.0073 16.2 0.0 1 1 2.2e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pAANQ01000006_00029 - 335 0.0087 15.4 0.0 1 1 2.5e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pAANQ01000006_00029 - 335 0.0092 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pAANQ01000006_00029 - 335 0.019 15.1 0.0 1 1 6.3e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 pAANQ01000006_00029 - 335 0.021 13.8 0.0 1 1 6.1e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 pAANQ01000006_00029 - 335 0.022 14.8 0.1 1 1 9.7e-05 0.054 13.5 0.0 5 50 147 186 135 244 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 pAANQ01000006_00029 - 335 0.024 14.4 0.0 1 1 9e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 pAANQ01000006_00029 - 335 0.026 14.2 0.0 1 1 9.6e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pAANQ01000006_00029 - 335 0.037 13.5 0.0 1 1 0.00011 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 pAANQ01000006_00029 - 335 0.039 14.0 0.1 1 1 0.00019 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 pAANQ01000006_00029 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pAANQ01000006_00029 - 335 0.046 13.0 0.0 1 1 0.00014 0.08 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin RNA_helicase PF00910.22 107 pAANQ01000006_00029 - 335 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase PRK PF00485.18 197 pAANQ01000006_00029 - 335 0.056 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pAANQ01000006_00029 - 335 0.066 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pAANQ01000006_00029 - 335 0.074 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pAANQ01000006_00029 - 335 0.088 12.7 0.0 1 1 0.00035 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pAANQ01000006_00029 - 335 0.097 12.6 0.5 1 1 0.00043 0.24 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 pAANQ01000006_00029 - 335 0.11 12.4 0.1 1 1 0.00041 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 pAANQ01000006_00029 - 335 0.13 12.8 0.1 1 1 0.00069 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 pAANQ01000006_00029 - 335 0.15 11.7 0.0 1 1 0.00042 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pAANQ01000006_00029 - 335 0.15 11.8 0.0 1 1 0.00043 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pAANQ01000006_00029 - 335 0.35 11.3 3.8 1 2 2.6 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 pAANQ01000006_00029 - 335 0.35 11.3 3.8 2 2 0.00066 0.37 11.3 1.3 22 37 163 178 160 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pAANQ01000006_00030 - 603 1.4e-105 353.8 0.1 1 1 3.2e-109 1.9e-105 353.4 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pAANQ01000006_00030 - 603 1.1e-24 86.8 0.0 1 1 3.5e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pAANQ01000006_00030 - 603 6.2e-16 58.3 0.0 1 2 1.2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pAANQ01000006_00030 - 603 6.2e-16 58.3 0.0 2 2 1.9e-14 1.1e-10 41.0 0.0 187 370 347 532 308 543 0.80 Type IV secretion-system coupling protein DNA-binding domain Cag12 PF13117.6 97 pAANQ01000006_00031 - 143 1e-16 61.2 0.1 1 1 1.5e-20 1.3e-16 60.8 0.1 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pAANQ01000006_00031 - 143 0.062 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 pAANQ01000006_00032 - 252 9.5e-39 132.8 1.2 1 1 6.7e-43 1.2e-38 132.5 1.2 1 154 25 190 25 192 0.91 TrbM PRELI PF04707.14 157 pAANQ01000006_00033 - 266 0.02 14.7 1.4 1 2 1 3.7e+03 -2.4 0.0 9 19 35 45 8 65 0.59 PRELI-like family PRELI PF04707.14 157 pAANQ01000006_00033 - 266 0.02 14.7 1.4 2 2 9.1e-06 0.033 14.0 0.3 96 155 84 148 78 150 0.87 PRELI-like family Prismane PF03063.20 511 pAANQ01000006_00033 - 266 0.14 10.8 0.0 1 1 5.3e-05 0.19 10.4 0.0 75 191 94 216 78 231 0.73 Prismane/CO dehydrogenase family TACC_C PF05010.14 201 pAANQ01000006_00033 - 266 2.1 8.1 10.2 1 2 0.001 3.7 7.3 8.3 13 125 2 113 1 138 0.78 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 pAANQ01000006_00033 - 266 2.1 8.1 10.2 2 2 0.11 4e+02 0.6 2.0 8 45 101 140 94 176 0.68 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Mod_r PF07200.13 146 pAANQ01000006_00033 - 266 4.9 7.3 12.2 1 3 0.0061 22 5.1 1.6 41 134 8 102 1 107 0.62 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 pAANQ01000006_00033 - 266 4.9 7.3 12.2 2 3 0.0012 4.4 7.4 3.2 78 135 104 161 91 165 0.78 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 pAANQ01000006_00033 - 266 4.9 7.3 12.2 3 3 0.47 1.7e+03 -1.0 0.0 65 88 207 230 204 259 0.71 Modifier of rudimentary (Mod(r)) protein IFT20 PF14931.6 119 pAANQ01000006_00033 - 266 5.9 7.1 10.6 1 3 0.14 5.1e+02 0.8 0.3 25 46 24 45 1 56 0.48 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 pAANQ01000006_00033 - 266 5.9 7.1 10.6 2 3 0.00037 1.3 9.2 0.8 25 54 90 119 82 127 0.89 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 pAANQ01000006_00033 - 266 5.9 7.1 10.6 3 3 0.042 1.5e+02 2.5 0.2 23 43 121 141 116 165 0.75 Intraflagellar transport complex B, subunit 20 KH_5 PF13184.6 69 pAANQ01000006_00034 - 47 0.003 17.6 0.2 1 1 3.8e-07 0.0034 17.4 0.2 4 38 2 36 1 41 0.94 NusA-like KH domain DUF5526 PF17664.1 168 pAANQ01000006_00034 - 47 0.027 14.0 0.2 1 1 3.2e-06 0.029 13.9 0.2 99 126 10 38 4 45 0.84 Family of unknown function (DUF5526) Redoxin PF08534.10 147 pAANQ01000006_00035 - 206 0.029 14.1 0.9 1 2 0.055 4.9e+02 0.4 0.1 119 146 11 36 4 37 0.82 Redoxin Redoxin PF08534.10 147 pAANQ01000006_00035 - 206 0.029 14.1 0.9 2 2 2e-05 0.18 11.5 0.1 49 76 144 173 137 191 0.79 Redoxin YnfE PF17452.2 78 pAANQ01000006_00035 - 206 0.12 12.6 0.1 1 3 1.4e-05 0.12 12.6 0.1 11 33 10 32 5 47 0.88 Uncharacterized YnfE-like YnfE PF17452.2 78 pAANQ01000006_00035 - 206 0.12 12.6 0.1 2 3 0.2 1.8e+03 -0.7 0.3 36 50 143 157 136 185 0.64 Uncharacterized YnfE-like YnfE PF17452.2 78 pAANQ01000006_00035 - 206 0.12 12.6 0.1 3 3 0.56 5e+03 -2.1 1.5 26 38 184 195 170 205 0.48 Uncharacterized YnfE-like Topoisom_bac PF01131.20 413 pAANQ01000006_00036 - 730 3.2e-97 326.1 8.5 1 1 4.3e-100 4.5e-97 325.7 8.5 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pAANQ01000006_00036 - 730 4.4e-12 46.1 2.4 1 2 7e-15 7.3e-12 45.4 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pAANQ01000006_00036 - 730 4.4e-12 46.1 2.4 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pAANQ01000006_00036 - 730 5.7e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pAANQ01000006_00036 - 730 5.7e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pAANQ01000006_00036 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pAANQ01000006_00036 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pAANQ01000006_00036 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pAANQ01000006_00036 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pAANQ01000006_00036 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pAANQ01000006_00036 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pAANQ01000006_00036 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pAANQ01000006_00036 - 730 0.038 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pAANQ01000006_00036 - 730 0.038 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain EF-hand_8 PF13833.6 55 pAANQ01000006_00036 - 730 0.052 13.4 0.0 1 1 0.00015 0.16 11.9 0.0 25 53 93 121 85 123 0.91 EF-hand domain pair zf-C2H2_4 PF13894.6 24 pAANQ01000006_00036 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pAANQ01000006_00036 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pAANQ01000006_00036 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pAANQ01000006_00036 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 pAANQ01000006_00036 - 730 0.09 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pAANQ01000006_00036 - 730 0.09 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pAANQ01000006_00036 - 730 0.43 10.8 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pAANQ01000006_00036 - 730 0.43 10.8 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pAANQ01000006_00036 - 730 0.43 10.8 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pAANQ01000006_00036 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pAANQ01000006_00036 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pAANQ01000006_00036 - 730 0.63 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pAANQ01000006_00036 - 730 0.63 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pAANQ01000006_00036 - 730 0.73 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pAANQ01000006_00036 - 730 0.73 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pAANQ01000006_00036 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pAANQ01000006_00036 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pAANQ01000006_00036 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pAANQ01000006_00036 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pAANQ01000006_00037 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pAANQ01000006_00037 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pAANQ01000006_00039 - 639 1.2e-59 201.1 0.3 1 1 9.5e-63 1.7e-59 200.6 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pAANQ01000006_00039 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pAANQ01000006_00039 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pAANQ01000006_00039 - 639 1.3e-16 60.4 0.0 1 1 1.7e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pAANQ01000006_00039 - 639 2.2e-12 46.9 0.1 1 1 2.8e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pAANQ01000006_00039 - 639 9.9e-07 28.8 0.1 1 1 1.3e-09 2.3e-06 27.7 0.1 4 114 8 129 5 129 0.80 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pAANQ01000006_00039 - 639 0.00055 20.3 0.0 1 1 7.4e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pAANQ01000006_00039 - 639 0.0092 15.8 0.0 1 1 1.1e-05 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pAANQ01000006_00039 - 639 0.02 14.2 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pAANQ01000006_00039 - 639 0.049 12.9 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 109 0.84 AIG1 family FeoB_N PF02421.18 156 pAANQ01000006_00039 - 639 0.11 12.0 0.2 1 1 0.00025 0.45 10.0 0.1 32 117 53 132 45 163 0.73 Ferrous iron transport protein B Papo_T_antigen PF02380.15 93 pAANQ01000006_00040 - 88 0.00028 21.0 1.6 1 1 5.9e-08 0.00035 20.7 1.6 51 74 44 66 28 83 0.87 T-antigen specific domain CEBP_ZZ PF16366.5 61 pAANQ01000006_00040 - 88 0.022 15.0 2.6 1 1 5e-06 0.03 14.6 2.6 13 53 28 66 25 74 0.79 Cytoplasmic polyadenylation element-binding protein ZZ domain DUF1272 PF06906.11 57 pAANQ01000006_00040 - 88 0.049 13.7 3.8 1 1 1.2e-05 0.074 13.1 3.8 8 39 29 58 26 65 0.90 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pAANQ01000006_00041 - 186 2.9e-05 24.1 0.4 1 2 1.4e-07 0.00063 19.7 0.1 3 27 2 26 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pAANQ01000006_00041 - 186 2.9e-05 24.1 0.4 2 2 0.023 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pAANQ01000006_00041 - 186 0.00046 20.3 0.8 1 1 1.1e-06 0.0047 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pAANQ01000006_00041 - 186 0.037 13.5 0.0 1 1 1.1e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pAANQ01000006_00041 - 186 0.12 12.7 0.0 1 1 4.5e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain RHH_7 PF16777.5 74 pAANQ01000006_00042 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 pAANQ01000006_00042 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal PDDEXK_9 PF08011.11 105 pAANQ01000006_00043 - 159 0.017 15.0 0.2 1 1 1.8e-06 0.032 14.1 0.2 11 77 38 106 34 128 0.82 PD-(D/E)XK nuclease superfamily DUF5445 PF17520.2 52 pAANQ01000006_00044 - 77 1 9.2 12.2 1 1 7.3e-05 1.3 8.9 11.2 7 36 43 71 41 74 0.88 Family of unknown function (DUF5445) Adenyl_transf PF04439.12 279 pAJ489618_00001 - 233 6.7e-81 271.5 0.9 1 1 4.2e-85 7.6e-81 271.3 0.9 70 278 1 207 1 208 0.99 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 pAJ489618_00002 - 180 7.8e-21 74.5 0.1 1 1 6.3e-24 1e-20 74.1 0.1 14 117 53 153 34 153 0.81 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 pAJ489618_00002 - 180 1.4e-13 51.1 0.1 1 1 1.4e-16 2.4e-13 50.3 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 pAJ489618_00002 - 180 2.6e-12 46.8 0.0 1 1 2.2e-15 3.6e-12 46.3 0.0 24 107 65 154 46 159 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 pAJ489618_00002 - 180 3e-10 40.5 1.6 1 1 2.2e-13 3.6e-10 40.2 1.6 31 152 54 171 26 174 0.83 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 pAJ489618_00002 - 180 0.00021 21.4 0.0 1 1 2.5e-07 0.0004 20.4 0.0 6 58 79 130 49 132 0.88 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 138 pAJ489618_00002 - 180 0.00052 20.7 0.0 1 1 3.9e-07 0.00064 20.4 0.0 52 138 71 154 28 154 0.73 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 128 pAJ489618_00002 - 180 0.0019 18.3 0.0 1 1 4.8e-06 0.0078 16.3 0.0 21 126 50 154 46 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 pAJ489618_00002 - 180 0.015 15.3 0.0 1 1 1.4e-05 0.024 14.6 0.0 21 78 96 154 91 164 0.86 FR47-like protein Acetyltransf_15 PF17013.5 210 pAJ489618_00002 - 180 0.035 13.6 0.2 1 1 6.5e-05 0.11 12.0 0.2 72 139 96 156 44 174 0.69 Putative acetyl-transferase Acetyltransf_8 PF13523.6 145 pAJ489618_00002 - 180 0.042 13.5 0.0 1 2 0.11 1.8e+02 1.8 0.0 15 57 44 85 42 96 0.86 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 145 pAJ489618_00002 - 180 0.042 13.5 0.0 2 2 0.0004 0.64 9.7 0.0 89 139 106 155 100 160 0.91 Acetyltransferase (GNAT) domain PanZ PF12568.8 128 pAJ489618_00002 - 180 0.08 12.7 0.0 1 1 6.9e-05 0.11 12.2 0.0 43 121 77 154 47 163 0.72 Acetyltransferase (GNAT) domain, PanZ APH PF01636.23 240 pAJ489618_00003 - 264 4.5e-26 92.2 0.0 1 1 8.7e-30 5.2e-26 92.0 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pAJ489618_00003 - 264 0.0022 17.6 0.0 1 1 6e-07 0.0036 16.9 0.0 134 198 171 236 99 244 0.77 Choline/ethanolamine kinase RIO1 PF01163.22 188 pAJ489618_00003 - 264 0.0099 15.5 0.0 1 2 0.0022 13 5.3 0.0 48 116 50 120 26 127 0.74 RIO1 family RIO1 PF01163.22 188 pAJ489618_00003 - 264 0.0099 15.5 0.0 2 2 0.00029 1.8 8.2 0.0 123 153 182 213 157 230 0.77 RIO1 family HTH_11 PF08279.12 55 pAJ489618_00004 - 67 0.00042 20.2 0.1 1 1 6.3e-08 0.00056 19.8 0.1 1 28 6 32 6 34 0.95 HTH domain HTH_24 PF13412.6 48 pAJ489618_00004 - 67 0.096 12.3 0.3 1 1 1.6e-05 0.14 11.7 0.3 7 30 9 32 1 32 0.93 Winged helix-turn-helix DNA-binding Resolvase PF00239.21 146 pAJ490186_00001 - 212 4.3e-18 65.8 0.3 1 1 2.8e-21 7.1e-18 65.1 0.3 2 136 65 195 64 204 0.84 Resolvase, N terminal domain MerR PF00376.23 38 pAJ490186_00001 - 212 1.5e-12 47.1 0.0 1 1 9.6e-16 2.4e-12 46.4 0.0 1 38 6 43 6 43 0.99 MerR family regulatory protein MerR_1 PF13411.6 69 pAJ490186_00001 - 212 6e-11 42.3 0.0 1 2 6.7e-14 1.7e-10 40.8 0.0 2 47 6 52 5 69 0.92 MerR HTH family regulatory protein MerR_1 PF13411.6 69 pAJ490186_00001 - 212 6e-11 42.3 0.0 2 2 2.2 5.7e+03 -2.5 0.0 51 64 89 102 81 106 0.75 MerR HTH family regulatory protein HTH_17 PF12728.7 51 pAJ490186_00001 - 212 0.00043 20.4 0.0 1 1 3.2e-07 0.00082 19.5 0.0 1 44 4 49 4 62 0.91 Helix-turn-helix domain NTPase_P4 PF11602.8 320 pAJ490186_00001 - 212 0.0027 17.0 0.0 1 1 1.3e-06 0.0034 16.6 0.0 48 141 53 142 30 163 0.82 ATPase P4 of dsRNA bacteriophage phi-12 PIN_2 PF10130.9 133 pAJ490186_00001 - 212 0.063 13.5 1.4 1 2 1.8 4.5e+03 -2.2 0.0 78 94 61 77 45 81 0.68 PIN domain PIN_2 PF10130.9 133 pAJ490186_00001 - 212 0.063 13.5 1.4 2 2 3.3e-05 0.083 13.1 0.4 7 89 117 201 114 205 0.88 PIN domain HTH_23 PF13384.6 50 pAJ490186_00001 - 212 0.068 13.0 0.0 1 2 0.00012 0.31 10.9 0.0 18 37 5 24 2 29 0.89 Homeodomain-like domain HTH_23 PF13384.6 50 pAJ490186_00001 - 212 0.068 13.0 0.0 2 2 0.95 2.4e+03 -1.5 0.0 9 25 84 102 77 103 0.71 Homeodomain-like domain OrfB_Zn_ribbon PF07282.11 69 pAJ490186_00002 - 427 2.1e-22 78.8 0.9 1 1 9.4e-26 4.2e-22 77.8 0.9 1 68 313 382 313 383 0.97 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 pAJ490186_00002 - 427 2.7e-18 66.4 4.5 1 2 6.2e-22 2.8e-18 66.3 2.3 4 117 174 299 171 301 0.85 Probable transposase OrfB_IS605 PF01385.19 120 pAJ490186_00002 - 427 2.7e-18 66.4 4.5 2 2 2.7 1.2e+04 -3.5 0.0 22 35 406 419 396 421 0.76 Probable transposase HTH_OrfB_IS605 PF12323.8 47 pAJ490186_00002 - 427 7.7e-15 54.1 0.3 1 1 5e-18 2.2e-14 52.6 0.3 5 47 12 54 8 54 0.95 Helix-turn-helix domain Zn_Tnp_IS1595 PF12760.7 46 pAJ490186_00002 - 427 0.036 14.0 2.2 1 1 1.6e-05 0.071 13.1 2.2 13 44 336 367 332 369 0.89 Transposase zinc-ribbon domain APH PF01636.23 240 pAJ490186_00003 - 264 5.9e-26 91.8 0.0 1 1 1.1e-29 6.9e-26 91.6 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pAJ490186_00003 - 264 0.0018 17.9 0.0 1 1 4.9e-07 0.0029 17.2 0.0 134 198 171 236 104 244 0.77 Choline/ethanolamine kinase RIO1 PF01163.22 188 pAJ490186_00003 - 264 0.018 14.7 0.0 1 2 0.0029 17 4.9 0.0 49 116 51 120 29 130 0.66 RIO1 family RIO1 PF01163.22 188 pAJ490186_00003 - 264 0.018 14.7 0.0 2 2 0.0005 3 7.4 0.0 128 152 187 212 166 230 0.81 RIO1 family PRELI PF04707.14 157 pAVFM02000066_00001 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pAVFM02000066_00001 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pAVFM02000066_00001 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pAVFM02000066_00001 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pAVFM02000066_00001 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pAVFM02000066_00001 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Relaxase PF03432.14 242 pAVFM02000068_00001 - 456 2.8e-10 40.2 7.9 1 2 4.7e-14 2.8e-10 40.2 7.9 48 232 119 299 70 307 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pAVFM02000068_00001 - 456 2.8e-10 40.2 7.9 2 2 0.0042 25 4.4 3.1 126 180 345 403 320 418 0.81 Relaxase/Mobilisation nuclease domain AdenylateSensor PF16579.5 117 pAVFM02000068_00001 - 456 0.15 12.5 7.3 1 3 0.0017 10 6.6 0.0 17 76 104 167 96 193 0.75 Adenylate sensor of SNF1-like protein kinase AdenylateSensor PF16579.5 117 pAVFM02000068_00001 - 456 0.15 12.5 7.3 2 3 0.00062 3.7 8.0 0.5 16 70 203 257 194 284 0.86 Adenylate sensor of SNF1-like protein kinase AdenylateSensor PF16579.5 117 pAVFM02000068_00001 - 456 0.15 12.5 7.3 3 3 0.21 1.2e+03 -0.1 0.2 32 56 347 371 308 387 0.70 Adenylate sensor of SNF1-like protein kinase Endostatin PF06482.11 315 pAVFM02000068_00001 - 456 1.1 8.6 7.0 1 2 0.2 1.2e+03 -1.3 0.1 71 71 177 177 52 291 0.62 Collagenase NC10 and Endostatin Endostatin PF06482.11 315 pAVFM02000068_00001 - 456 1.1 8.6 7.0 2 2 3.4e-05 0.2 11.1 3.1 54 158 324 434 270 448 0.57 Collagenase NC10 and Endostatin Helicase_C PF00271.31 111 pAVFM02000069_00001 - 404 0.0015 18.9 0.0 1 4 8.1e-08 0.0015 18.9 0.0 63 111 2 52 1 52 0.85 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pAVFM02000069_00001 - 404 0.0015 18.9 0.0 2 4 0.28 5.1e+03 -2.2 0.1 26 26 187 187 138 236 0.60 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pAVFM02000069_00001 - 404 0.0015 18.9 0.0 3 4 0.1 1.9e+03 -0.8 0.1 14 45 221 254 206 265 0.63 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pAVFM02000069_00001 - 404 0.0015 18.9 0.0 4 4 0.16 2.8e+03 -1.4 0.1 21 66 309 359 289 366 0.51 Helicase conserved C-terminal domain efb-c PF12199.8 65 pAVFM02000069_00002 - 49 0.05 13.7 0.3 1 1 3.9e-06 0.07 13.2 0.3 40 62 4 26 1 29 0.93 Extracellular fibrinogen binding protein C terminal Toprim PF01751.22 103 pAVFM02000070_00001 - 178 3.2e-13 49.8 0.0 1 1 7.3e-17 4.3e-13 49.4 0.0 2 102 3 133 2 134 0.91 Toprim domain Topoisom_bac PF01131.20 413 pAVFM02000070_00001 - 178 0.008 15.2 0.0 1 1 2e-06 0.012 14.6 0.0 5 27 154 176 151 178 0.89 DNA topoisomerase EF-hand_8 PF13833.6 55 pAVFM02000070_00001 - 178 0.019 14.8 0.0 1 1 7.6e-06 0.046 13.6 0.0 26 53 94 121 86 123 0.91 EF-hand domain pair Cys_rich_KTR PF14205.6 54 pAVFM02000072_00001 - 57 4.7e-32 109.6 5.1 1 1 7.9e-35 5.2e-32 109.4 5.1 2 54 5 57 4 57 0.99 Cysteine-rich KTR Prim_Zn_Ribbon PF08273.12 38 pAVFM02000072_00001 - 57 0.00057 20.1 1.3 1 2 3.4e-06 0.0023 18.2 0.0 6 19 9 22 7 25 0.86 Zinc-binding domain of primase-helicase Prim_Zn_Ribbon PF08273.12 38 pAVFM02000072_00001 - 57 0.00057 20.1 1.3 2 2 0.96 6.4e+02 0.8 0.4 2 9 29 36 28 40 0.72 Zinc-binding domain of primase-helicase zf-ISL3 PF14690.6 47 pAVFM02000072_00001 - 57 0.0029 18.2 0.6 1 2 0.0012 0.78 10.5 0.1 4 14 8 18 6 26 0.74 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ISL3 PF14690.6 47 pAVFM02000072_00001 - 57 0.0029 18.2 0.6 2 2 0.019 13 6.6 0.1 5 16 33 46 30 55 0.71 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.7 46 pAVFM02000072_00001 - 57 0.0033 17.4 1.7 1 2 0.0017 1.1 9.3 0.1 21 34 9 22 5 29 0.84 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 pAVFM02000072_00001 - 57 0.0033 17.4 1.7 2 2 0.0032 2.1 8.4 0.1 20 32 32 44 22 50 0.79 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 40 pAVFM02000072_00001 - 57 0.0038 17.3 1.4 1 2 0.0013 0.87 9.8 0.2 28 38 8 18 1 20 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pAVFM02000072_00001 - 57 0.0038 17.3 1.4 2 2 0.0085 5.7 7.2 0.1 27 37 31 42 21 44 0.73 Zinc ribbon domain zf-TFIIB PF13453.6 41 pAVFM02000072_00001 - 57 0.0042 16.4 0.8 1 2 0.014 9.3 5.7 0.1 2 9 9 16 8 28 0.67 Transcription factor zinc-finger zf-TFIIB PF13453.6 41 pAVFM02000072_00001 - 57 0.0042 16.4 0.8 2 2 0.0008 0.53 9.7 0.1 1 12 32 44 32 51 0.71 Transcription factor zinc-finger DNA_ligase_ZBD PF03119.16 27 pAVFM02000072_00001 - 57 0.0048 16.9 1.8 1 2 7e-05 0.046 13.7 0.1 2 10 9 17 9 25 0.87 NAD-dependent DNA ligase C4 zinc finger domain DNA_ligase_ZBD PF03119.16 27 pAVFM02000072_00001 - 57 0.0048 16.9 1.8 2 2 0.24 1.6e+02 2.5 0.2 2 6 33 37 32 39 0.79 NAD-dependent DNA ligase C4 zinc finger domain NOB1_Zn_bind PF08772.11 72 pAVFM02000072_00001 - 57 0.0056 16.8 2.2 1 2 0.0065 4.3 7.6 0.3 25 38 8 21 2 29 0.84 Nin one binding (NOB1) Zn-ribbon like NOB1_Zn_bind PF08772.11 72 pAVFM02000072_00001 - 57 0.0056 16.8 2.2 2 2 0.0012 0.77 10.0 0.1 24 38 31 45 22 53 0.85 Nin one binding (NOB1) Zn-ribbon like Nudix_N_2 PF14803.6 34 pAVFM02000072_00001 - 57 0.01 15.8 1.1 1 3 3.4 2.3e+03 -1.4 0.0 27 31 3 7 2 8 0.82 Nudix N-terminal Nudix_N_2 PF14803.6 34 pAVFM02000072_00001 - 57 0.01 15.8 1.1 2 3 0.00076 0.51 10.3 0.0 3 16 9 22 8 27 0.89 Nudix N-terminal Nudix_N_2 PF14803.6 34 pAVFM02000072_00001 - 57 0.01 15.8 1.1 3 3 0.085 56 3.8 0.0 2 6 32 36 31 45 0.79 Nudix N-terminal Elf1 PF05129.13 78 pAVFM02000072_00001 - 57 0.013 15.6 0.2 1 1 2.6e-05 0.017 15.2 0.2 24 63 9 48 5 51 0.91 Transcription elongation factor Elf1 like zf-NADH-PPase PF09297.11 32 pAVFM02000072_00001 - 57 0.014 15.0 2.0 1 2 0.00047 0.31 10.7 0.1 6 14 9 17 8 21 0.87 NADH pyrophosphatase zinc ribbon domain zf-NADH-PPase PF09297.11 32 pAVFM02000072_00001 - 57 0.014 15.0 2.0 2 2 0.07 46 3.8 0.2 23 29 32 38 31 39 0.60 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 49 pAVFM02000072_00001 - 57 0.016 15.2 1.0 1 1 4.1e-05 0.027 14.5 1.0 12 37 6 39 2 47 0.81 Double zinc ribbon zf-DNL PF05180.12 64 pAVFM02000072_00001 - 57 0.017 15.1 0.6 1 1 5.3e-05 0.035 14.0 0.6 6 47 9 50 3 56 0.86 DNL zinc finger Zn_ribbon_SprT PF17283.2 38 pAVFM02000072_00001 - 57 0.024 14.6 2.5 1 1 6.2e-05 0.041 13.8 2.5 7 34 9 41 8 45 0.78 SprT-like zinc ribbon domain DpnI PF06044.12 182 pAVFM02000072_00001 - 57 0.033 13.8 0.4 1 1 6.3e-05 0.042 13.5 0.4 32 72 7 49 3 54 0.79 Dam-replacing family zf-C4_Topoisom PF01396.19 39 pAVFM02000072_00001 - 57 0.033 14.0 1.9 1 2 0.017 11 5.8 0.1 3 10 8 15 7 23 0.79 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pAVFM02000072_00001 - 57 0.033 14.0 1.9 2 2 0.0059 3.9 7.3 0.1 3 13 32 43 31 46 0.79 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.6 23 pAVFM02000072_00001 - 57 0.042 13.6 3.5 1 2 0.0068 4.5 7.1 0.3 16 22 9 15 3 21 0.79 zinc-ribbon domain zinc_ribbon_2 PF13240.6 23 pAVFM02000072_00001 - 57 0.042 13.6 3.5 2 2 0.0053 3.5 7.5 0.3 15 20 32 37 27 40 0.75 zinc-ribbon domain zf-LITAF-like PF10601.9 70 pAVFM02000072_00001 - 57 0.046 14.0 2.6 1 2 0.027 18 5.7 0.2 5 22 6 23 3 29 0.79 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pAVFM02000072_00001 - 57 0.046 14.0 2.6 2 2 0.002 1.3 9.3 0.2 4 18 29 43 26 53 0.79 LITAF-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 43 pAVFM02000072_00001 - 57 0.07 12.6 3.3 1 1 0.001 0.68 9.5 3.3 3 25 9 36 7 48 0.73 TFIIB zinc-binding HypA PF01155.19 112 pAVFM02000072_00001 - 57 0.079 13.0 0.7 1 1 0.00015 0.1 12.6 0.7 71 107 7 49 3 53 0.70 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Pox_E10 PF04805.12 70 pAVFM02000072_00001 - 57 0.12 12.2 1.0 1 2 0.0087 5.8 6.9 0.0 13 36 4 27 1 32 0.88 E10-like protein conserved region Pox_E10 PF04805.12 70 pAVFM02000072_00001 - 57 0.12 12.2 1.0 2 2 0.033 22 5.0 0.1 16 34 31 49 28 56 0.82 E10-like protein conserved region zf-trcl PF13451.6 48 pAVFM02000072_00001 - 57 0.13 12.2 3.1 1 1 0.0011 0.74 9.8 2.5 29 43 26 40 5 43 0.89 Probable zinc-ribbon domain zf-H2C2_2 PF13465.6 26 pAVFM02000072_00001 - 57 0.15 12.5 1.7 1 2 0.046 30 5.3 0.1 17 25 9 17 7 18 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pAVFM02000072_00001 - 57 0.15 12.5 1.7 2 2 0.015 9.7 6.8 0.3 14 21 30 37 21 39 0.84 Zinc-finger double domain zf-Di19 PF05605.12 54 pAVFM02000072_00001 - 57 0.2 12.0 1.9 1 2 0.0028 1.9 8.9 0.1 32 44 7 19 2 28 0.65 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 pAVFM02000072_00001 - 57 0.2 12.0 1.9 2 2 0.21 1.4e+02 2.9 0.1 4 11 32 39 28 51 0.65 Drought induced 19 protein (Di19), zinc-binding zf_C2H2_10 PF18414.1 26 pAVFM02000072_00001 - 57 0.43 10.2 0.2 1 2 0.39 2.6e+02 1.3 0.2 5 10 9 14 7 16 0.83 C2H2 type zinc-finger zf_C2H2_10 PF18414.1 26 pAVFM02000072_00001 - 57 0.43 10.2 0.2 2 2 0.00065 0.43 10.2 0.2 5 22 33 51 30 53 0.82 C2H2 type zinc-finger DUF3797 PF12677.7 48 pAVFM02000072_00001 - 57 0.49 10.3 6.6 1 2 0.018 12 5.9 0.7 13 21 6 14 2 24 0.80 Domain of unknown function (DUF3797) DUF3797 PF12677.7 48 pAVFM02000072_00001 - 57 0.49 10.3 6.6 2 2 0.0042 2.8 7.9 1.2 13 28 30 48 18 57 0.62 Domain of unknown function (DUF3797) zf-ribbon_3 PF13248.6 26 pAVFM02000072_00001 - 57 0.64 9.5 5.6 1 2 0.0027 1.8 8.1 0.5 16 25 6 15 3 17 0.70 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pAVFM02000072_00001 - 57 0.64 9.5 5.6 2 2 0.056 37 3.9 0.5 4 8 32 36 31 38 0.83 zinc-ribbon domain GTP_EFTU PF00009.27 194 pAVFM02000072_00002 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pAVFM02000072_00002 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pAVFM02000072_00002 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pAVFM02000072_00002 - 639 1.2e-16 60.5 0.0 1 1 1.7e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pAVFM02000072_00002 - 639 1.3e-12 47.6 0.1 1 1 1.6e-15 2.9e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pAVFM02000072_00002 - 639 2e-06 27.9 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pAVFM02000072_00002 - 639 0.0011 19.3 0.0 1 1 1.6e-06 0.0028 18.0 0.0 4 58 266 314 264 318 0.83 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pAVFM02000072_00002 - 639 0.015 15.1 0.0 1 1 1.7e-05 0.031 14.1 0.0 42 82 377 417 344 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pAVFM02000072_00002 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pAVFM02000072_00002 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 pAVFM02000072_00002 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B TnpV PF14198.6 112 pAVFM02000072_00003 - 124 2.8e-43 146.4 0.5 1 1 1.8e-47 3.2e-43 146.2 0.5 1 112 12 122 12 122 0.98 Transposon-encoded protein TnpV SNF2_N PF00176.23 350 pAVFM02000073_00001 - 441 1.2e-10 40.6 0.2 1 1 1.2e-13 3.1e-10 39.3 0.2 57 191 223 400 140 409 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pAVFM02000073_00001 - 441 6.1e-10 39.4 9.3 1 1 7.2e-12 1.8e-08 34.5 9.2 2 146 205 400 204 437 0.78 Type III restriction enzyme, res subunit DEAD PF00270.29 176 pAVFM02000073_00001 - 441 5.8e-07 29.4 0.4 1 2 1.2e-07 0.0003 20.6 0.0 2 108 209 314 208 318 0.76 DEAD/DEAH box helicase DEAD PF00270.29 176 pAVFM02000073_00001 - 441 5.8e-07 29.4 0.4 2 2 0.0025 6.4 6.5 0.3 88 135 350 400 315 412 0.66 DEAD/DEAH box helicase AAA_11 PF13086.6 261 pAVFM02000073_00001 - 441 0.0032 17.3 4.6 1 2 0.0011 2.8 7.6 0.1 2 42 207 247 206 292 0.63 AAA domain AAA_11 PF13086.6 261 pAVFM02000073_00001 - 441 0.0032 17.3 4.6 2 2 0.0004 1 9.1 3.0 149 226 301 395 275 397 0.79 AAA domain Tup_N PF08581.10 77 pAVFM02000073_00001 - 441 0.072 13.4 0.3 1 4 2.7 7e+03 -2.6 0.0 52 75 11 34 9 36 0.71 Tup N-terminal Tup_N PF08581.10 77 pAVFM02000073_00001 - 441 0.072 13.4 0.3 2 4 2 5e+03 -2.1 0.1 7 14 155 162 151 188 0.59 Tup N-terminal Tup_N PF08581.10 77 pAVFM02000073_00001 - 441 0.072 13.4 0.3 3 4 2.8e-05 0.072 13.4 0.3 25 76 290 342 271 343 0.75 Tup N-terminal Tup_N PF08581.10 77 pAVFM02000073_00001 - 441 0.072 13.4 0.3 4 4 0.032 82 3.6 0.2 41 59 360 378 344 380 0.76 Tup N-terminal CLZ PF16526.5 71 pAVFM02000073_00001 - 441 1.5 9.3 4.7 1 2 0.28 7.1e+02 0.7 0.1 19 45 11 37 3 46 0.81 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CLZ PF16526.5 71 pAVFM02000073_00001 - 441 1.5 9.3 4.7 2 2 0.00099 2.5 8.5 1.4 13 58 333 378 326 379 0.92 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF1690 PF07956.11 139 pAVFM02000073_00001 - 441 1.8 9.0 6.3 1 3 3.1 7.9e+03 -2.8 0.1 32 63 3 34 2 43 0.60 Protein of Unknown function (DUF1690) DUF1690 PF07956.11 139 pAVFM02000073_00001 - 441 1.8 9.0 6.3 2 3 0.069 1.8e+02 2.5 0.1 23 69 167 213 142 232 0.85 Protein of Unknown function (DUF1690) DUF1690 PF07956.11 139 pAVFM02000073_00001 - 441 1.8 9.0 6.3 3 3 0.00076 2 8.9 0.6 46 102 324 377 317 386 0.85 Protein of Unknown function (DUF1690) Eco57I PF07669.11 106 pAVFM02000073_00002 - 653 1.3e-05 25.6 0.2 1 1 5.8e-09 5.2e-05 23.7 0.2 3 103 372 472 370 475 0.80 Eco57I restriction-modification methylase MTS PF05175.14 169 pAVFM02000073_00002 - 653 0.0038 16.8 0.0 1 1 1e-06 0.0091 15.6 0.0 31 140 309 422 299 442 0.72 Methyltransferase small domain RHH_7 PF16777.5 74 pAVFM02000073_00003 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 pAVFM02000073_00003 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal Cag12 PF13117.6 97 pAVFM02000074_00002 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pAVFM02000074_00002 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pAVFM02000074_00002 - 145 0.08 12.7 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pAVFM02000074_00002 - 145 3.9 7.4 5.6 1 2 0.00081 3.6 7.5 2.3 36 49 29 42 2 47 0.91 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pAVFM02000074_00002 - 145 3.9 7.4 5.6 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 pAVFM02000074_00003 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pAVFM02000074_00003 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pAVFM02000074_00003 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pAVFM02000074_00003 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pAVFM02000074_00003 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 pAVFM02000074_00004 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pAVFM02000074_00004 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pAVFM02000074_00004 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pAVFM02000074_00004 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pAVFM02000074_00004 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pAVFM02000074_00004 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pAVFM02000074_00004 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pAVFM02000074_00004 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pAVFM02000074_00004 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pAVFM02000074_00004 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pAVFM02000074_00004 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pAVFM02000074_00004 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pAVFM02000074_00004 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pAVFM02000074_00004 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pAVFM02000074_00004 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pAVFM02000074_00004 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pAVFM02000074_00004 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pAVFM02000074_00004 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pAVFM02000074_00004 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pAVFM02000074_00004 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pAVFM02000074_00004 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pAVFM02000074_00004 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pAVFM02000074_00004 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pAVFM02000074_00004 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pAVFM02000074_00004 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pAVFM02000074_00004 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pAVFM02000074_00004 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pAVFM02000074_00004 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pAVFM02000074_00004 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pAVFM02000074_00004 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pAVFM02000074_00004 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pAVFM02000074_00004 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 pAVFM02000074_00005 - 319 1.9e-48 164.8 0.1 1 1 3.6e-52 3.2e-48 164.1 0.1 1 187 122 303 122 303 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pAVFM02000074_00005 - 319 0.022 13.8 0.1 1 1 3.6e-06 0.032 13.3 0.1 31 81 250 300 233 305 0.89 HaeIII restriction endonuclease HNOBA PF07701.14 221 pAVFM02000075_00001 - 167 0.077 12.4 0.0 1 1 2e-05 0.12 11.8 0.0 109 153 40 89 14 99 0.75 Heme NO binding associated cEGF PF12662.7 24 pAVFM02000075_00001 - 167 0.081 12.9 0.0 1 1 2.2e-05 0.13 12.2 0.0 14 24 4 15 1 15 0.81 Complement Clr-like EGF-like bZIP_1 PF00170.21 64 pAVFM02000075_00001 - 167 0.79 9.9 4.9 1 2 0.0056 34 4.6 0.3 28 57 26 55 23 61 0.84 bZIP transcription factor bZIP_1 PF00170.21 64 pAVFM02000075_00001 - 167 0.79 9.9 4.9 2 2 0.001 6.3 7.0 0.5 36 57 144 165 141 167 0.90 bZIP transcription factor Phage_pRha PF09669.10 88 pAVFM02000075_00002 - 185 1.5e-28 99.2 0.0 1 1 2.6e-32 2.3e-28 98.6 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pAVFM02000075_00002 - 185 0.0018 18.4 0.0 1 1 4.2e-07 0.0038 17.3 0.0 23 90 27 94 22 96 0.90 Uncharacterized protein conserved in archaea (DUF2250) DUF3251 PF11622.8 165 pAVFM02000075_00003 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pAVFM02000075_00003 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pAVFM02000075_00003 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pAVFM02000075_00003 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pAVFM02000075_00003 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pAVFM02000075_00003 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pAVFM02000075_00003 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pAVFM02000075_00003 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pAVFM02000075_00003 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pAVFM02000075_00003 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pAVFM02000075_00003 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pAVFM02000075_00003 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pAVFM02000075_00003 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pAVFM02000075_00003 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pAVFM02000075_00004 - 140 2.6e-25 88.5 0.1 1 1 1.9e-29 3.5e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pAVFM02000075_00005 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pAVFM02000075_00005 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pAVFM02000075_00005 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pAVFM02000075_00005 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pAVFM02000075_00005 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pAVFM02000075_00005 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pAVFM02000075_00005 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pAVFM02000075_00006 - 328 5e-28 98.9 13.9 1 1 2.4e-31 7.2e-28 98.3 13.9 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pAVFM02000075_00006 - 328 0.0042 17.2 1.4 1 3 0.88 2.6e+03 -1.4 0.0 30 53 134 157 122 164 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pAVFM02000075_00006 - 328 0.0042 17.2 1.4 2 3 5.4e-06 0.016 15.3 0.1 18 82 195 259 188 263 0.92 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pAVFM02000075_00006 - 328 0.0042 17.2 1.4 3 3 1.2 3.7e+03 -1.9 0.0 62 79 302 319 292 327 0.75 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pAVFM02000075_00006 - 328 0.007 17.1 5.8 1 2 0.034 1e+02 3.6 0.5 93 135 105 145 40 182 0.61 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pAVFM02000075_00006 - 328 0.007 17.1 5.8 2 2 2.3e-06 0.007 17.1 5.8 47 125 219 315 203 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 pAVFM02000075_00006 - 328 0.092 13.4 3.4 1 2 1.7 5.1e+03 -1.9 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 pAVFM02000075_00006 - 328 0.092 13.4 3.4 2 2 2.6e-05 0.078 13.6 1.0 32 84 209 270 202 295 0.83 von Willebrand factor type A domain Phage_holin_6_1 PF09682.10 101 pAVFM02000075_00006 - 328 0.13 12.7 8.7 1 2 9.1e-05 0.27 11.7 0.3 4 62 77 136 75 154 0.81 Bacteriophage holin of superfamily 6 (Holin_LLH) Phage_holin_6_1 PF09682.10 101 pAVFM02000075_00006 - 328 0.13 12.7 8.7 2 2 0.017 51 4.4 2.4 36 90 268 323 251 327 0.83 Bacteriophage holin of superfamily 6 (Holin_LLH) DUF3752 PF12572.8 152 pAVFM02000075_00006 - 328 2.8 8.5 8.6 1 2 0.0033 9.9 6.7 0.4 21 49 106 136 98 153 0.70 Protein of unknown function (DUF3752) DUF3752 PF12572.8 152 pAVFM02000075_00006 - 328 2.8 8.5 8.6 2 2 0.01 31 5.1 2.6 33 106 233 320 218 328 0.76 Protein of unknown function (DUF3752) TrbL PF04610.14 215 pAVFM02000075_00007 - 330 2.7e-29 102.5 30.5 1 1 3e-33 2.7e-29 102.5 30.5 1 214 38 250 38 251 0.92 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pAVFM02000075_00007 - 330 0.21 11.4 1.5 1 2 0.13 1.2e+03 -0.6 0.1 38 65 68 101 59 114 0.50 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pAVFM02000075_00007 - 330 0.21 11.4 1.5 2 2 7.3e-05 0.65 9.8 0.1 29 81 232 286 201 298 0.76 T-cell leukemia translocation-altered Trep_dent_lipo PF09710.10 397 pAVFM02000075_00008 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pAVFM02000075_00008 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pAVFM02000075_00009 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pAVFM02000075_00009 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pAVFM02000075_00010 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pAVFM02000075_00010 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pAVFM02000075_00010 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) SSB PF00436.25 104 pAVFM02000076_00001 - 153 1.3e-23 83.0 0.0 1 1 3.7e-27 1.7e-23 82.7 0.0 1 103 1 104 1 105 0.98 Single-strand binding protein family DnaJ-X PF14308.6 211 pAVFM02000076_00001 - 153 0.0027 17.2 0.1 1 1 8.3e-07 0.0037 16.7 0.1 61 133 61 133 60 149 0.72 X-domain of DnaJ-containing Colicin_Ia PF11504.8 72 pAVFM02000076_00001 - 153 0.11 12.7 0.1 1 2 0.38 1.7e+03 -0.8 0.0 39 50 28 39 19 42 0.80 Colicin Ia Colicin_Ia PF11504.8 72 pAVFM02000076_00001 - 153 0.11 12.7 0.1 2 2 0.00011 0.48 10.6 0.0 27 53 68 93 50 104 0.81 Colicin Ia DUF1981 PF09324.10 84 pAVFM02000076_00001 - 153 0.14 12.1 0.0 1 1 5.2e-05 0.23 11.3 0.0 47 72 86 111 78 115 0.83 Domain of unknown function (DUF1981) DUF4389 PF14333.6 76 pAVFM02000076_00002 - 61 0.054 13.4 3.8 1 1 2.7e-05 0.08 12.9 3.8 15 53 2 40 1 48 0.93 Domain of unknown function (DUF4389) DUF2512 PF10710.9 136 pAVFM02000076_00002 - 61 0.12 12.1 6.0 1 1 4.5e-05 0.13 11.9 6.0 62 102 6 46 2 52 0.92 Protein of unknown function (DUF2512) TctB PF07331.11 135 pAVFM02000076_00002 - 61 0.53 10.6 9.7 1 1 0.00019 0.56 10.5 9.7 83 131 4 53 1 56 0.69 Tripartite tricarboxylate transporter TctB family LptF_LptG PF03739.14 354 pAVFM02000076_00002 - 61 7.6 5.3 10.9 1 1 0.0028 8.3 5.1 10.9 276 322 3 53 1 56 0.76 Lipopolysaccharide export system permease LptF/LptG DUF1129 PF06570.11 206 pAVFM02000076_00002 - 61 7.9 5.9 8.5 1 1 0.003 9 5.7 8.5 151 197 2 48 1 53 0.66 Protein of unknown function (DUF1129) DUF4407 PF14362.6 298 pAVFM02000076_00002 - 61 8.6 5.6 8.5 1 1 0.0033 10 5.4 8.5 19 54 5 43 2 47 0.87 Domain of unknown function (DUF4407) MgtE_N PF03448.17 102 pAVFM02000077_00001 - 100 4e-05 24.2 0.3 1 2 0.0004 3.6 8.2 0.0 58 90 20 52 18 57 0.85 MgtE intracellular N domain MgtE_N PF03448.17 102 pAVFM02000077_00001 - 100 4e-05 24.2 0.3 2 2 4.4e-06 0.039 14.6 0.3 50 77 55 82 52 85 0.91 MgtE intracellular N domain Com_YlbF PF06133.11 105 pAVFM02000077_00001 - 100 0.0099 16.5 1.9 1 2 1 8.9e+03 -2.7 0.0 63 63 40 40 30 53 0.50 Control of competence regulator ComK, YlbF/YmcA Com_YlbF PF06133.11 105 pAVFM02000077_00001 - 100 0.0099 16.5 1.9 2 2 1.1e-06 0.0099 16.5 1.9 3 44 57 98 56 100 0.94 Control of competence regulator ComK, YlbF/YmcA CpXC PF14353.6 118 pAVFM02000077_00002 - 143 0.033 14.2 2.2 1 1 4.5e-06 0.041 13.9 2.2 2 62 9 75 8 140 0.72 CpXC protein A2L_zn_ribbon PF08792.10 33 pAVFM02000077_00002 - 143 0.71 9.7 5.5 1 2 0.0053 48 3.8 0.5 2 10 6 14 5 18 0.78 A2L zinc ribbon domain A2L_zn_ribbon PF08792.10 33 pAVFM02000077_00002 - 143 0.71 9.7 5.5 2 2 0.0003 2.7 7.8 0.6 5 15 46 56 44 59 0.89 A2L zinc ribbon domain T4SS PF07996.11 197 pAVFM02000078_00001 - 318 3.4e-07 30.9 8.7 1 2 1.3e-10 3.4e-07 30.9 8.7 1 145 20 159 20 179 0.56 Type IV secretion system proteins T4SS PF07996.11 197 pAVFM02000078_00001 - 318 3.4e-07 30.9 8.7 2 2 0.21 5.3e+02 0.9 13.8 135 181 214 260 160 267 0.64 Type IV secretion system proteins HBM PF16591.5 254 pAVFM02000078_00001 - 318 0.0086 15.5 15.0 1 2 5.8e-06 0.015 14.7 0.2 195 240 27 72 18 81 0.90 Helical bimodular sensor domain HBM PF16591.5 254 pAVFM02000078_00001 - 318 0.0086 15.5 15.0 2 2 0.013 32 3.8 9.6 43 137 141 240 117 266 0.72 Helical bimodular sensor domain HTH_16 PF12645.7 65 pAVFM02000078_00001 - 318 0.053 13.6 0.4 1 2 0.24 6.2e+02 0.5 0.0 16 28 37 49 30 63 0.86 Helix-turn-helix domain HTH_16 PF12645.7 65 pAVFM02000078_00001 - 318 0.053 13.6 0.4 2 2 0.00031 0.79 9.8 0.2 7 50 184 221 182 230 0.79 Helix-turn-helix domain NYD-SP28_assoc PF14775.6 60 pAVFM02000078_00001 - 318 0.14 12.2 5.9 1 3 0.00033 0.84 9.8 0.5 23 52 31 60 27 67 0.90 Sperm tail C-terminal domain NYD-SP28_assoc PF14775.6 60 pAVFM02000078_00001 - 318 0.14 12.2 5.9 2 3 0.79 2e+03 -1.0 0.0 30 45 69 84 63 87 0.69 Sperm tail C-terminal domain NYD-SP28_assoc PF14775.6 60 pAVFM02000078_00001 - 318 0.14 12.2 5.9 3 3 0.044 1.1e+02 3.0 0.3 18 45 156 183 142 192 0.76 Sperm tail C-terminal domain GCN5L1 PF06320.13 114 pAVFM02000078_00001 - 318 0.48 10.6 0.1 1 3 0.00019 0.48 10.6 0.1 65 108 28 71 24 77 0.72 GCN5-like protein 1 (GCN5L1) GCN5L1 PF06320.13 114 pAVFM02000078_00001 - 318 0.48 10.6 0.1 2 3 0.0097 25 5.1 0.6 24 72 117 164 104 179 0.82 GCN5-like protein 1 (GCN5L1) GCN5L1 PF06320.13 114 pAVFM02000078_00001 - 318 0.48 10.6 0.1 3 3 0.16 4.1e+02 1.1 2.1 19 59 212 255 199 267 0.64 GCN5-like protein 1 (GCN5L1) DUF2937 PF11157.8 162 pAVFM02000078_00001 - 318 4.9 6.9 8.7 1 3 0.29 7.5e+02 -0.3 0.1 76 96 26 46 23 64 0.55 Protein of unknown function (DUF2937) DUF2937 PF11157.8 162 pAVFM02000078_00001 - 318 4.9 6.9 8.7 2 3 0.0058 15 5.3 0.5 55 114 142 201 135 214 0.85 Protein of unknown function (DUF2937) DUF2937 PF11157.8 162 pAVFM02000078_00001 - 318 4.9 6.9 8.7 3 3 0.0054 14 5.4 0.3 88 138 219 269 212 273 0.80 Protein of unknown function (DUF2937) FlxA PF14282.6 101 pAVFM02000078_00001 - 318 7.4 6.6 29.5 1 4 0.0034 8.7 6.4 3.1 6 61 30 84 26 91 0.74 FlxA-like protein FlxA PF14282.6 101 pAVFM02000078_00001 - 318 7.4 6.6 29.5 2 4 0.017 42 4.2 0.0 13 61 68 123 61 126 0.71 FlxA-like protein FlxA PF14282.6 101 pAVFM02000078_00001 - 318 7.4 6.6 29.5 3 4 0.002 5.1 7.1 4.7 17 57 139 179 123 192 0.87 FlxA-like protein FlxA PF14282.6 101 pAVFM02000078_00001 - 318 7.4 6.6 29.5 4 4 0.059 1.5e+02 2.4 5.0 8 39 209 242 202 258 0.62 FlxA-like protein FIVAR PF07554.13 71 pAVFM02000078_00002 - 61 0.034 14.9 8.8 1 1 6.2e-06 0.056 14.2 8.8 13 62 6 57 3 57 0.81 FIVAR domain PRD PF00874.20 90 pAVFM02000078_00002 - 61 0.077 13.3 4.1 1 1 1.1e-05 0.096 13.0 4.1 34 66 8 40 5 49 0.84 PRD domain T4SS-DNA_transf PF02534.14 469 pAVFM02000079_00001 - 493 3e-58 197.8 2.6 1 1 2.7e-61 1.2e-57 195.8 2.6 46 364 137 479 94 487 0.81 Type IV secretory system Conjugative DNA transfer TrwB_AAD_bind PF10412.9 386 pAVFM02000079_00001 - 493 4.2e-19 68.7 0.0 1 2 5.3e-06 0.024 13.6 0.0 49 148 167 282 136 290 0.68 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pAVFM02000079_00001 - 493 4.2e-19 68.7 0.0 2 2 5.4e-18 2.4e-14 53.1 0.0 141 308 315 483 297 487 0.83 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 126 pAVFM02000079_00001 - 493 3e-14 53.1 0.0 1 2 0.26 1.2e+03 -0.5 0.0 22 38 370 386 357 388 0.83 TraM recognition site of TraD and TraG TraG-D_C PF12696.7 126 pAVFM02000079_00001 - 493 3e-14 53.1 0.0 2 2 5.3e-17 2.4e-13 50.2 0.0 3 66 421 484 420 491 0.95 TraM recognition site of TraD and TraG DUF418 PF04235.12 163 pAVFM02000079_00001 - 493 0.057 13.4 1.4 1 1 2e-05 0.091 12.7 1.4 13 75 7 70 1 79 0.91 Protein of unknown function (DUF418) VirB8 PF04335.13 214 pAVFM02000080_00001 - 225 3.6e-29 102.1 0.9 1 1 2.3e-33 4.2e-29 101.9 0.9 23 213 26 208 13 209 0.88 VirB8 protein TrwB_AAD_bind PF10412.9 386 pAVFM02000080_00003 - 197 6.4e-05 22.0 0.0 1 1 8.5e-09 7.6e-05 21.8 0.0 224 333 12 125 5 171 0.69 Type IV secretion-system coupling protein DNA-binding domain CNTF PF01110.17 194 pAVFM02000080_00003 - 197 0.084 12.2 0.0 1 1 1.4e-05 0.12 11.7 0.0 34 108 45 124 39 140 0.76 Ciliary neurotrophic factor YsaB PF13983.6 75 pAVFM02000081_00001 - 114 0.11 12.8 0.1 1 2 0.15 2.7e+03 -1.3 0.0 8 32 5 29 2 32 0.77 YsaB-like lipoprotein YsaB PF13983.6 75 pAVFM02000081_00001 - 114 0.11 12.8 0.1 2 2 2.3e-05 0.42 10.9 0.2 24 50 51 79 48 95 0.85 YsaB-like lipoprotein CagX PF03524.15 211 pAVFM02000082_00001 - 208 9.1e-26 90.9 0.7 1 1 1.7e-29 1e-25 90.7 0.7 34 210 11 199 1 200 0.83 Conjugal transfer protein DUF4905 PF16248.5 83 pAVFM02000082_00001 - 208 0.055 13.4 0.1 1 1 3.4e-05 0.2 11.6 0.1 34 74 120 160 110 168 0.85 Domain of unknown function (DUF4905) Phosphodiest PF01663.22 357 pAVFM02000082_00001 - 208 0.076 12.6 1.3 1 2 4.2e-05 0.25 10.9 1.1 255 316 62 125 42 170 0.72 Type I phosphodiesterase / nucleotide pyrophosphatase Phosphodiest PF01663.22 357 pAVFM02000082_00001 - 208 0.076 12.6 1.3 2 2 0.11 6.8e+02 -0.4 0.0 58 86 167 193 165 205 0.77 Type I phosphodiesterase / nucleotide pyrophosphatase ETRAMP PF09716.10 83 pAVFM02000082_00002 - 100 1.5 9.0 8.9 1 2 2e-05 0.36 10.9 1.5 2 49 2 47 1 53 0.84 Malarial early transcribed membrane protein (ETRAMP) ETRAMP PF09716.10 83 pAVFM02000082_00002 - 100 1.5 9.0 8.9 2 2 0.0085 1.5e+02 2.5 1.0 46 57 86 97 75 99 0.69 Malarial early transcribed membrane protein (ETRAMP) TrbI PF03743.14 187 pAVFM02000082_00003 - 180 8.1e-32 110.6 0.7 1 1 6e-36 1.1e-31 110.2 0.7 1 131 41 171 41 179 0.91 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pAVFM02000082_00004 - 65 1.8e-06 27.9 0.1 1 1 2.1e-10 1.9e-06 27.9 0.1 146 187 8 49 1 49 0.91 Bacterial conjugation TrbI-like protein TraH_2 PF06871.11 207 pAVFM02000082_00004 - 65 0.06 13.0 0.2 1 2 0.00058 5.2 6.6 0.0 18 49 15 45 8 47 0.86 TraH_2 TraH_2 PF06871.11 207 pAVFM02000082_00004 - 65 0.06 13.0 0.2 2 2 0.0018 16 5.0 0.0 115 131 48 64 45 65 0.92 TraH_2 FOXP-CC PF16159.5 69 pAVFM02000082_00005 - 66 0.0033 18.0 0.3 1 1 8.4e-07 0.0038 17.8 0.3 31 64 22 55 4 58 0.82 FOXP coiled-coil domain MCR_C PF04609.12 271 pAVFM02000082_00005 - 66 0.23 10.5 4.5 1 1 5.6e-05 0.25 10.4 4.5 193 242 2 51 1 60 0.93 Methyl-coenzyme M reductase operon protein C Allexi_40kDa PF05549.11 271 pAVFM02000082_00005 - 66 0.66 9.4 4.9 1 1 0.00014 0.64 9.5 4.9 90 146 7 64 1 66 0.69 Allexivirus 40kDa protein Aida_N PF08910.10 103 pAVFM02000082_00005 - 66 0.68 10.4 5.2 1 1 0.00016 0.71 10.3 5.2 24 85 4 64 1 66 0.87 Aida N-terminus TrbL PF04610.14 215 pAVFM02000084_00002 - 382 1.5e-31 109.9 22.6 1 3 0.38 6.7e+03 -3.4 0.0 75 89 11 28 4 41 0.57 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pAVFM02000084_00002 - 382 1.5e-31 109.9 22.6 2 3 8.1e-36 1.5e-31 109.9 22.6 1 215 46 280 46 280 0.92 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pAVFM02000084_00002 - 382 1.5e-31 109.9 22.6 3 3 0.046 8.2e+02 -0.4 0.0 42 65 357 380 347 382 0.81 TrbL/VirB6 plasmid conjugal transfer protein Topoisom_bac PF01131.20 413 pAVFM02000084_00003 - 133 2.2e-13 50.0 0.0 1 1 5e-17 3e-13 49.6 0.0 3 62 68 126 66 129 0.92 DNA topoisomerase Toprim PF01751.22 103 pAVFM02000084_00003 - 133 4.4e-10 39.7 0.3 1 2 1.5e-13 9.2e-10 38.7 0.2 61 103 8 49 3 49 0.92 Toprim domain Toprim PF01751.22 103 pAVFM02000084_00003 - 133 4.4e-10 39.7 0.3 2 2 1.1 6.9e+03 -2.7 0.0 40 44 90 94 58 111 0.58 Toprim domain Toprim_4 PF13662.6 89 pAVFM02000084_00003 - 133 0.1 13.1 0.0 1 2 4.9e-05 0.29 11.6 0.0 54 76 10 32 2 45 0.76 Toprim domain Toprim_4 PF13662.6 89 pAVFM02000084_00003 - 133 0.1 13.1 0.0 2 2 0.67 4e+03 -1.6 0.0 19 32 57 70 55 102 0.73 Toprim domain DUF2852 PF11014.8 122 pAVFM02000085_00002 - 246 0.0052 16.9 1.5 1 3 0.3 1.1e+03 -0.2 0.3 98 114 5 22 2 41 0.55 Protein of unknown function (DUF2852) DUF2852 PF11014.8 122 pAVFM02000085_00002 - 246 0.0052 16.9 1.5 2 3 1.5e-06 0.0052 16.9 1.5 41 107 88 156 62 159 0.80 Protein of unknown function (DUF2852) DUF2852 PF11014.8 122 pAVFM02000085_00002 - 246 0.0052 16.9 1.5 3 3 0.4 1.4e+03 -0.6 0.0 30 63 181 213 177 227 0.73 Protein of unknown function (DUF2852) DUF5442 PF17514.2 107 pAVFM02000085_00002 - 246 0.026 14.7 5.3 1 2 1.1 3.9e+03 -1.9 0.2 33 52 10 29 4 47 0.63 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pAVFM02000085_00002 - 246 0.026 14.7 5.3 2 2 7.1e-06 0.026 14.7 5.3 31 98 134 201 120 214 0.85 Family of unknown function (DUF5442) Stn1_C PF12659.7 120 pAVFM02000085_00002 - 246 0.1 12.6 3.0 1 1 7e-05 0.25 11.3 3.0 6 52 142 189 137 237 0.82 Telomere capping C-terminal wHTH DUF1856 PF08983.10 48 pAVFM02000085_00002 - 246 0.53 10.6 4.2 1 3 0.66 2.4e+03 -1.1 0.2 24 34 29 43 24 54 0.64 Domain of unknown function (DUF1856) DUF1856 PF08983.10 48 pAVFM02000085_00002 - 246 0.53 10.6 4.2 2 3 0.002 7.3 6.9 0.5 1 14 78 91 78 104 0.91 Domain of unknown function (DUF1856) DUF1856 PF08983.10 48 pAVFM02000085_00002 - 246 0.53 10.6 4.2 3 3 0.028 1e+02 3.2 0.0 11 20 154 163 144 168 0.82 Domain of unknown function (DUF1856) NifT PF06988.11 64 pAVFM02000085_00002 - 246 7.3 6.5 6.9 1 3 0.19 6.7e+02 0.2 0.4 19 33 6 20 5 26 0.79 NifT/FixU protein NifT PF06988.11 64 pAVFM02000085_00002 - 246 7.3 6.5 6.9 2 3 0.15 5.4e+02 0.5 0.1 20 52 152 186 139 191 0.67 NifT/FixU protein NifT PF06988.11 64 pAVFM02000085_00002 - 246 7.3 6.5 6.9 3 3 0.00087 3.1 7.6 0.3 18 31 193 206 179 227 0.83 NifT/FixU protein Toprim_2 PF13155.6 90 pAVFM02000085_00004 - 202 2.6e-13 50.2 0.9 1 2 0.19 4.8e+02 1.3 0.1 53 83 30 60 29 66 0.78 Toprim-like Toprim_2 PF13155.6 90 pAVFM02000085_00004 - 202 2.6e-13 50.2 0.9 2 2 7.9e-16 2e-12 47.3 0.1 1 90 70 161 70 161 0.89 Toprim-like DUF3991 PF13154.6 76 pAVFM02000085_00004 - 202 0.00012 22.3 0.1 1 1 1.2e-07 0.00032 21.0 0.1 36 72 21 57 12 62 0.88 Protein of unknown function (DUF3991) Sushi_2 PF09014.10 88 pAVFM02000085_00004 - 202 0.056 13.3 0.6 1 2 4.5 1.2e+04 -3.7 0.1 16 26 57 67 53 73 0.69 Beta-2-glycoprotein-1 fifth domain Sushi_2 PF09014.10 88 pAVFM02000085_00004 - 202 0.056 13.3 0.6 2 2 3.6e-05 0.091 12.7 0.1 31 80 104 156 95 162 0.80 Beta-2-glycoprotein-1 fifth domain Toprim_3 PF13362.6 95 pAVFM02000085_00004 - 202 0.067 13.6 0.0 1 1 4.7e-05 0.12 12.8 0.0 1 89 68 161 68 164 0.77 Toprim domain Toprim_4 PF13662.6 89 pAVFM02000085_00004 - 202 0.071 13.6 0.0 1 1 7.4e-05 0.19 12.2 0.0 2 76 68 140 67 150 0.76 Toprim domain Toprim PF01751.22 103 pAVFM02000085_00004 - 202 0.09 13.0 1.2 1 2 5.8e-05 0.15 12.3 0.5 17 90 66 147 52 159 0.72 Toprim domain Toprim PF01751.22 103 pAVFM02000085_00004 - 202 0.09 13.0 1.2 2 2 2 5.2e+03 -2.3 0.0 45 59 174 188 149 192 0.68 Toprim domain Osmo_CC PF08946.10 46 pAVFM02000085_00004 - 202 0.26 11.6 0.1 1 2 0.58 1.5e+03 -0.5 0.5 19 26 61 68 58 72 0.83 Osmosensory transporter coiled coil Osmo_CC PF08946.10 46 pAVFM02000085_00004 - 202 0.26 11.6 0.1 2 2 0.0001 0.26 11.6 0.1 21 41 175 195 174 199 0.93 Osmosensory transporter coiled coil VirB8 PF04335.13 214 pAY190284_00001 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pAY190284_00001 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pAY190285_00001 - 295 2.8e-55 187.3 1.9 1 1 2.6e-59 4.6e-55 186.6 1.9 2 211 29 270 28 270 0.92 Conjugal transfer protein TrbI PF03743.14 187 pAY190286_00001 - 138 5.8e-30 104.5 0.0 1 1 7.3e-34 6.6e-30 104.3 0.0 61 187 2 122 1 122 0.93 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pAY190286_00001 - 138 0.0049 16.0 0.1 1 1 6.9e-07 0.0062 15.7 0.1 31 81 69 119 50 124 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pAY190287_00001 - 332 6.4e-54 182.8 0.0 1 1 1.3e-56 7.4e-54 182.6 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pAY190287_00001 - 332 6.1e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pAY190287_00001 - 332 0.00016 21.1 0.0 1 1 4.3e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pAY190287_00001 - 332 0.00022 20.8 0.0 1 1 6.5e-07 0.00038 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pAY190287_00001 - 332 0.0014 18.9 0.0 1 1 4.4e-06 0.0026 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pAY190287_00001 - 332 0.0026 17.5 0.0 1 1 9.1e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pAY190287_00001 - 332 0.003 17.3 0.0 1 1 8.2e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pAY190287_00001 - 332 0.0037 17.3 0.0 1 1 1.3e-05 0.0073 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pAY190287_00001 - 332 0.0049 15.9 0.0 1 1 1.2e-05 0.0072 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pAY190287_00001 - 332 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pAY190287_00001 - 332 0.0087 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pAY190287_00001 - 332 0.0088 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pAY190287_00001 - 332 0.018 14.8 0.0 1 1 6.3e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pAY190287_00001 - 332 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 244 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pAY190287_00001 - 332 0.022 13.7 0.0 1 1 5.8e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pAY190287_00001 - 332 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pAY190287_00001 - 332 0.024 14.4 0.0 1 1 9.2e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pAY190287_00001 - 332 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pAY190287_00001 - 332 0.035 13.5 0.0 1 1 9.7e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pAY190287_00001 - 332 0.037 14.4 0.0 1 1 0.00018 0.11 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pAY190287_00001 - 332 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pAY190287_00001 - 332 0.039 13.2 0.0 1 1 0.00012 0.069 12.4 0.0 14 49 158 193 145 207 0.83 Zeta toxin PRK PF00485.18 197 pAY190287_00001 - 332 0.052 13.3 0.0 1 1 0.00019 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pAY190287_00001 - 332 0.063 11.9 0.0 1 1 0.00015 0.086 11.4 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pAY190287_00001 - 332 0.065 13.6 0.0 1 1 0.00017 0.1 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pAY190287_00001 - 332 0.085 12.8 0.4 1 1 0.00039 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pAY190287_00001 - 332 0.089 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pAY190287_00001 - 332 0.11 12.4 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pAY190287_00001 - 332 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pAY190287_00001 - 332 0.2 11.4 0.0 1 1 0.00054 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pAY190287_00001 - 332 0.29 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pAY190287_00001 - 332 0.29 11.6 3.1 2 2 0.00055 0.32 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain Phage_pRha PF09669.10 88 pAY190288_00001 - 230 1.8e-23 82.9 0.1 1 1 3e-27 5.3e-23 81.4 0.1 2 88 38 125 37 125 0.93 Phage regulatory protein Rha (Phage_pRha) GTP_EFTU PF00009.27 194 pAY190525_00001 - 639 9e-59 198.3 0.3 1 1 6.3e-62 1.2e-58 197.8 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pAY190525_00001 - 639 2.6e-23 82.1 0.0 1 2 1.4 2.8e+03 -1.9 0.0 81 97 63 79 58 99 0.70 Elongation factor G, domain IV EFG_IV PF03764.18 121 pAY190525_00001 - 639 2.6e-23 82.1 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pAY190525_00001 - 639 1.1e-16 60.6 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pAY190525_00001 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 2.9e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pAY190525_00001 - 639 1e-06 28.8 0.1 1 1 1.2e-09 2.4e-06 27.6 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pAY190525_00001 - 639 0.0012 19.2 0.0 1 1 1.4e-06 0.0028 18.0 0.0 4 58 266 314 264 318 0.83 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pAY190525_00001 - 639 0.015 15.1 0.0 1 1 1.6e-05 0.031 14.1 0.0 42 82 377 417 344 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pAY190525_00001 - 639 0.021 14.1 0.1 1 1 2e-05 0.039 13.2 0.1 9 76 8 82 3 90 0.72 Septin AIG1 PF04548.16 212 pAY190525_00001 - 639 0.043 13.1 0.0 1 1 5.4e-05 0.11 11.8 0.0 32 62 51 81 43 109 0.83 AIG1 family GTP_EFTU PF00009.27 194 pAY394560_00001 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pAY394560_00001 - 639 3.7e-23 81.6 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pAY394560_00001 - 639 3.7e-23 81.6 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pAY394560_00001 - 639 1.2e-16 60.5 0.0 1 1 1.7e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pAY394560_00001 - 639 1.3e-13 50.8 0.1 1 1 1.6e-16 2.8e-13 49.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pAY394560_00001 - 639 1.3e-06 28.5 0.2 1 2 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 pAY394560_00001 - 639 1.3e-06 28.5 0.2 2 2 4.9 8.8e+03 -3.2 0.0 67 87 261 286 255 313 0.59 50S ribosome-binding GTPase RF3_C PF16658.5 131 pAY394560_00001 - 639 0.0027 17.5 0.0 1 1 3.4e-06 0.0061 16.4 0.0 14 82 349 417 341 434 0.79 Class II release factor RF3, C-terminal domain GTP_EFTU_D2 PF03144.25 74 pAY394560_00001 - 639 0.012 16.0 0.0 1 1 1.4e-05 0.024 15.0 0.0 2 58 264 314 263 319 0.88 Elongation factor Tu domain 2 Septin PF00735.18 281 pAY394560_00001 - 639 0.02 14.2 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pAY394560_00001 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 pAY394560_00001 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 pAY394560_00002 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pAY394560_00002 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 pAY394560_00004 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pAY394560_00004 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pAY394560_00004 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain CtsR_C PF17727.1 72 pAY394560_00005 - 102 0.019 15.1 0.2 1 2 0.00017 3 8.0 0.0 3 38 31 66 27 73 0.86 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pAY394560_00005 - 102 0.019 15.1 0.2 2 2 0.0014 24 5.1 0.0 28 49 74 95 71 101 0.84 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pAY394560_00006 - 117 0.0057 16.0 1.4 1 3 6.3e-07 0.0057 16.0 1.4 18 43 3 28 1 30 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pAY394560_00006 - 117 0.0057 16.0 1.4 2 3 1 9e+03 -3.8 0.3 16 22 52 58 51 61 0.49 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pAY394560_00006 - 117 0.0057 16.0 1.4 3 3 0.77 6.9e+03 -3.4 0.9 17 29 76 88 74 92 0.65 Putative Flagellin, Flp1-like, domain vMSA PF00695.19 400 pAY394560_00006 - 117 1.9 7.5 5.4 1 1 0.00025 2.3 7.2 5.4 328 398 9 85 1 87 0.72 Major surface antigen from hepadnavirus LysE PF01810.18 193 pAY394560_00007 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pAY394560_00007 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pAY394560_00007 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pAY394560_00007 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pAY394560_00007 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pAY394560_00007 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pAY394560_00007 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pAY394560_00007 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pAY394560_00007 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 pAY394560_00008 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pAY394560_00008 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pAY394560_00008 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pAY394560_00008 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pAY394560_00008 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pAY394560_00008 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pAY394560_00009 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pAY394560_00009 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pAY394560_00010 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pAY394560_00010 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pAY394560_00010 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pAY394560_00010 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pAY394560_00010 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pAY394560_00010 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pAY394560_00011 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pAY394560_00012 - 1932 3.1e-16 59.1 2.7 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pAY394560_00012 - 1932 3.1e-16 59.1 2.7 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pAY394560_00012 - 1932 3.1e-16 59.1 2.7 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1876 1924 1846 1925 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pAY394560_00012 - 1932 4.9e-08 33.2 8.3 1 2 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pAY394560_00012 - 1932 4.9e-08 33.2 8.3 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1799 1910 1725 1932 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pAY394560_00012 - 1932 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pAY394560_00012 - 1932 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pAY394560_00012 - 1932 9.2e-06 25.5 1.8 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pAY394560_00012 - 1932 9.2e-06 25.5 1.8 2 2 0.12 4.2e+02 0.6 0.0 119 150 1883 1916 1828 1931 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 pAY394560_00012 - 1932 3.7e-05 24.2 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pAY394560_00012 - 1932 3.7e-05 24.2 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 664 701 655 716 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 pAY394560_00013 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 pAY394560_00013 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 pAY394560_00013 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 pAY394560_00013 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) Acetyltransf_7 PF13508.7 76 pAY394560_00014 - 246 0.00022 21.6 0.0 1 1 7.1e-08 0.00042 20.7 0.0 29 75 79 143 37 144 0.67 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pAY394560_00014 - 246 0.0032 17.7 0.0 1 1 1.3e-06 0.0079 16.4 0.0 64 92 81 109 56 142 0.78 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 pAY394560_00014 - 246 0.0091 16.0 0.3 1 1 2.8e-06 0.017 15.2 0.3 24 67 171 214 154 218 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Relaxase PF03432.14 242 pAY394560_00015 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pAY394560_00015 - 462 4.7e-10 39.5 7.4 2 2 0.0071 1.3e+02 2.0 5.4 119 183 326 395 318 430 0.69 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pAY394560_00016 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pAY394560_00016 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pAY394560_00016 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pAY394560_00016 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pAY394560_00016 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pAY394560_00016 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pAY394560_00016 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pAY394560_00016 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pAY394560_00016 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pAY394560_00016 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pAY394560_00016 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 pAY394560_00017 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 pAY394560_00017 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 pAY394560_00017 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 pAY394560_00017 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 pAY394560_00017 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 pAY394560_00019 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pAY394560_00019 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pAY394560_00019 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pAY394560_00019 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pAY394560_00019 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pAY394560_00020 - 92 0.0072 16.3 0.0 1 1 7.4e-07 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) Sdh_cyt PF01127.22 121 pAY394560_00021 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 pAY394560_00021 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 pAY394560_00021 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pAY394560_00023 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pAY394560_00024 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pAY394560_00025 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pAY394560_00025 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pAY394560_00025 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pAY394560_00025 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pAY394560_00025 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pAY394560_00025 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 pAY394560_00025 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pAY394560_00025 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pAY394560_00025 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pAY394560_00025 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pAY394560_00025 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pAY394560_00025 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pAY394560_00025 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 pAY394560_00026 - 204 2.5e-34 118.5 0.6 1 1 7.4e-38 3.3e-34 118.1 0.6 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pAY394560_00026 - 204 0.025 14.3 0.6 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pAY394560_00026 - 204 0.025 14.3 0.6 2 3 0.0021 9.6 6.1 0.0 2 36 117 152 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pAY394560_00026 - 204 0.025 14.3 0.6 3 3 0.0036 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pAY394560_00026 - 204 0.05 13.6 4.8 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pAY394560_00026 - 204 0.05 13.6 4.8 2 3 1.5 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pAY394560_00026 - 204 0.05 13.6 4.8 3 3 0.024 1.1e+02 3.0 0.1 39 55 159 175 153 177 0.91 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pAY394560_00026 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pAY394560_00026 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pAY394560_00026 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pAY394560_00027 - 135 0.00056 20.0 0.0 1 2 7.8e-08 0.0014 18.8 0.0 4 53 7 71 4 93 0.79 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pAY394560_00027 - 135 0.00056 20.0 0.0 2 2 0.0096 1.7e+02 2.5 0.0 12 35 55 77 53 106 0.80 CRISPR associated protein Cas2 TrbC PF04956.13 99 pAY394560_00029 - 87 6.2e-13 48.8 6.8 1 1 7.4e-17 6.6e-13 48.7 6.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pAY394560_00029 - 87 0.61 9.9 6.3 1 1 0.00015 1.3 8.9 6.2 108 135 60 87 10 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pAY394560_00030 - 922 7.1e-51 173.2 0.4 1 1 2.7e-54 1.6e-50 172.1 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pAY394560_00030 - 922 2.6e-21 75.7 1.0 1 1 7.4e-25 4.4e-21 74.9 1.0 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pAY394560_00030 - 922 0.046 13.2 0.1 1 1 1.6e-05 0.097 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pAY394560_00031 - 188 1.8e-31 108.5 0.0 1 1 3.2e-35 2.9e-31 107.9 0.0 2 88 24 122 23 122 0.89 Phage regulatory protein Rha (Phage_pRha) Y_Y_Y PF07495.13 66 pAY394560_00031 - 188 0.1 12.6 0.3 1 1 2e-05 0.18 11.8 0.3 19 63 126 174 122 177 0.80 Y_Y_Y domain PBECR2 PF18810.1 119 pAY394560_00032 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 SSB PF00436.25 104 pAY394560_00033 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pAY394560_00034 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pAY394560_00034 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pAY394560_00034 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pAY394560_00034 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pAY394560_00034 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pAY394560_00034 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pAY394560_00034 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pAY394560_00035 - 328 1e-28 101.1 13.2 1 1 5.6e-32 1.4e-28 100.6 13.2 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pAY394560_00035 - 328 0.0082 16.3 2.4 1 3 0.45 1.1e+03 -0.2 0.0 30 54 134 158 116 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pAY394560_00035 - 328 0.0082 16.3 2.4 2 3 8.2e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pAY394560_00035 - 328 0.0082 16.3 2.4 3 3 2.2 5.7e+03 -2.5 0.0 60 83 300 323 291 327 0.69 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 pAY394560_00035 - 328 0.016 15.9 0.9 1 2 1.8 4.5e+03 -1.7 0.0 54 69 123 138 98 163 0.56 von Willebrand factor type A domain VWA_2 PF13519.6 107 pAY394560_00035 - 328 0.016 15.9 0.9 2 2 1.4e-05 0.036 14.7 0.2 31 84 208 270 197 309 0.85 von Willebrand factor type A domain KMP11 PF03037.16 90 pAY394560_00035 - 328 0.02 15.7 0.1 1 2 6.6e-05 0.17 12.7 0.0 8 56 91 139 88 174 0.82 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 pAY394560_00035 - 328 0.02 15.7 0.1 2 2 4.4 1.1e+04 -2.7 0.0 9 21 235 247 228 267 0.50 Kinetoplastid membrane protein 11 AATF-Che1 PF13339.6 139 pAY394560_00035 - 328 0.023 15.3 12.3 1 2 0.024 62 4.3 0.7 48 135 107 145 42 185 0.60 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pAY394560_00035 - 328 0.023 15.3 12.3 2 2 1.1e-05 0.028 15.1 5.0 49 125 225 315 205 322 0.71 Apoptosis antagonizing transcription factor Tissue_fac PF01108.17 107 pAY394560_00035 - 328 0.029 14.2 0.1 1 1 2.4e-05 0.062 13.2 0.1 4 64 80 148 76 182 0.68 Tissue factor Allexi_40kDa PF05549.11 271 pAY394560_00035 - 328 1.2 8.6 6.3 1 2 0.045 1.1e+02 2.1 0.1 36 125 46 140 30 172 0.72 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pAY394560_00035 - 328 1.2 8.6 6.3 2 2 0.00047 1.2 8.6 2.0 61 145 212 293 191 320 0.59 Allexivirus 40kDa protein TrbL PF04610.14 215 pAY394560_00036 - 330 1.4e-29 103.5 34.4 1 2 1.5e-33 1.4e-29 103.5 34.4 1 214 38 250 38 251 0.92 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pAY394560_00036 - 330 1.4e-29 103.5 34.4 2 2 0.055 4.9e+02 0.3 0.4 35 86 245 293 241 324 0.56 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pAY394560_00036 - 330 0.097 12.5 1.3 1 2 0.27 2.4e+03 -1.6 0.1 39 51 69 81 60 113 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pAY394560_00036 - 330 0.097 12.5 1.3 2 2 2.4e-05 0.21 11.4 0.1 27 81 230 286 198 298 0.74 T-cell leukemia translocation-altered Trep_dent_lipo PF09710.10 397 pAY394560_00037 - 54 0.034 13.1 1.0 1 1 5.2e-06 0.031 13.2 1.0 3 25 3 24 1 53 0.80 Treponema clustered lipoprotein (Trep_dent_lipo) La_HTH_kDCL PF18177.1 90 pAY394560_00037 - 54 0.19 12.0 0.0 1 1 3.6e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain PsbT PF01405.17 29 pAY394560_00037 - 54 1.1 9.1 5.2 1 1 0.00027 1.6 8.6 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pAY394560_00038 - 219 1.6e-52 178.5 0.5 1 1 1.9e-56 1.7e-52 178.4 0.5 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pAY394560_00038 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pAY394560_00039 - 296 4.2e-56 190.0 1.7 1 1 1.1e-59 6.7e-56 189.3 1.7 2 211 31 271 30 271 0.92 Conjugal transfer protein TraE PF05309.11 182 pAY394560_00039 - 296 0.022 14.2 0.1 1 1 6.6e-06 0.039 13.3 0.1 107 171 89 154 86 161 0.83 TraE protein Rho_RNA_bind PF07497.12 73 pAY394560_00039 - 296 0.068 13.0 0.0 1 2 1.5 9.2e+03 -3.4 0.0 9 22 79 92 76 97 0.79 Rho termination factor, RNA-binding domain Rho_RNA_bind PF07497.12 73 pAY394560_00039 - 296 0.068 13.0 0.0 2 2 3.3e-05 0.2 11.6 0.0 21 49 241 269 232 288 0.84 Rho termination factor, RNA-binding domain TrbI PF03743.14 187 pAY394560_00040 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.4e+03 -3.4 0.3 136 154 140 166 120 172 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pAY394560_00040 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pAY394560_00040 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease T2SSE PF00437.20 273 pAY394560_00041 - 335 1.5e-54 184.9 0.0 1 1 3.1e-57 1.7e-54 184.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pAY394560_00041 - 335 7e-05 23.4 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pAY394560_00041 - 335 0.00011 21.6 0.0 1 1 3.1e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pAY394560_00041 - 335 0.00029 20.4 0.0 1 1 9.1e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pAY394560_00041 - 335 0.0014 18.9 0.0 1 1 4.6e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 pAY394560_00041 - 335 0.0014 18.4 0.0 1 1 4e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pAY394560_00041 - 335 0.0025 17.6 0.0 1 1 9.5e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pAY394560_00041 - 335 0.0035 17.3 0.0 1 1 1.3e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pAY394560_00041 - 335 0.0055 15.7 0.0 1 1 1.4e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pAY394560_00041 - 335 0.0073 16.2 0.0 1 1 2.2e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pAY394560_00041 - 335 0.0087 15.4 0.0 1 1 2.5e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pAY394560_00041 - 335 0.0092 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pAY394560_00041 - 335 0.019 15.1 0.0 1 1 6.3e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 pAY394560_00041 - 335 0.021 13.8 0.0 1 1 6.1e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 pAY394560_00041 - 335 0.022 14.8 0.1 1 1 9.7e-05 0.054 13.5 0.0 5 50 147 186 135 244 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 pAY394560_00041 - 335 0.024 14.4 0.0 1 1 9e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 pAY394560_00041 - 335 0.026 14.2 0.0 1 1 9.6e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pAY394560_00041 - 335 0.037 13.5 0.0 1 1 0.00011 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 pAY394560_00041 - 335 0.039 14.0 0.1 1 1 0.00019 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 pAY394560_00041 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pAY394560_00041 - 335 0.046 13.0 0.0 1 1 0.00014 0.08 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin RNA_helicase PF00910.22 107 pAY394560_00041 - 335 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase PRK PF00485.18 197 pAY394560_00041 - 335 0.056 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pAY394560_00041 - 335 0.066 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pAY394560_00041 - 335 0.074 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pAY394560_00041 - 335 0.088 12.7 0.0 1 1 0.00035 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pAY394560_00041 - 335 0.097 12.6 0.5 1 1 0.00043 0.24 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 pAY394560_00041 - 335 0.11 12.4 0.1 1 1 0.00041 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 pAY394560_00041 - 335 0.13 12.8 0.1 1 1 0.00069 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 pAY394560_00041 - 335 0.15 11.7 0.0 1 1 0.00042 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pAY394560_00041 - 335 0.15 11.8 0.0 1 1 0.00043 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pAY394560_00041 - 335 0.35 11.3 3.8 1 2 2.6 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 pAY394560_00041 - 335 0.35 11.3 3.8 2 2 0.00066 0.37 11.3 1.3 22 37 163 178 160 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pAY394560_00042 - 603 1.4e-105 353.8 0.1 1 1 3.2e-109 1.9e-105 353.4 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pAY394560_00042 - 603 1.1e-24 86.8 0.0 1 1 3.5e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pAY394560_00042 - 603 6.2e-16 58.3 0.0 1 2 1.2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pAY394560_00042 - 603 6.2e-16 58.3 0.0 2 2 1.9e-14 1.1e-10 41.0 0.0 187 370 347 532 308 543 0.80 Type IV secretion-system coupling protein DNA-binding domain Cag12 PF13117.6 97 pAY394560_00043 - 143 1e-16 61.2 0.1 1 1 1.5e-20 1.3e-16 60.8 0.1 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pAY394560_00043 - 143 0.062 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 pAY394560_00044 - 252 9.5e-39 132.8 1.2 1 1 6.7e-43 1.2e-38 132.5 1.2 1 154 25 190 25 192 0.91 TrbM PRELI PF04707.14 157 pAY394560_00045 - 266 0.028 14.2 2.2 1 2 0.49 1.8e+03 -1.4 0.1 122 129 35 42 4 73 0.51 PRELI-like family PRELI PF04707.14 157 pAY394560_00045 - 266 0.028 14.2 2.2 2 2 9.1e-06 0.033 14.0 0.3 96 155 84 148 79 150 0.87 PRELI-like family Prismane PF03063.20 511 pAY394560_00045 - 266 0.14 10.8 0.0 1 1 5.3e-05 0.19 10.4 0.0 75 191 94 216 78 231 0.73 Prismane/CO dehydrogenase family TACC_C PF05010.14 201 pAY394560_00045 - 266 2.3 8.0 10.0 1 1 0.00099 3.6 7.3 7.9 13 125 2 113 1 138 0.78 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Mod_r PF07200.13 146 pAY394560_00045 - 266 4.6 7.4 12.1 1 2 0.014 50 4.0 9.2 10 135 15 161 2 165 0.63 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 pAY394560_00045 - 266 4.6 7.4 12.1 2 2 0.47 1.7e+03 -1.0 0.0 65 88 207 230 204 259 0.71 Modifier of rudimentary (Mod(r)) protein IFT20 PF14931.6 119 pAY394560_00045 - 266 5.4 7.2 10.4 1 3 0.15 5.2e+02 0.8 0.3 25 46 24 45 1 56 0.50 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 pAY394560_00045 - 266 5.4 7.2 10.4 2 3 0.00037 1.3 9.2 0.8 25 54 90 119 82 127 0.89 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 pAY394560_00045 - 266 5.4 7.2 10.4 3 3 0.042 1.5e+02 2.5 0.2 23 43 121 141 116 165 0.75 Intraflagellar transport complex B, subunit 20 CdhD PF03599.16 386 pAY394560_00047 - 206 0.0071 15.1 0.0 1 1 1.9e-06 0.012 14.4 0.0 283 358 11 87 2 96 0.87 CO dehydrogenase/acetyl-CoA synthase delta subunit Redoxin PF08534.10 147 pAY394560_00047 - 206 0.028 14.1 0.9 1 2 0.082 4.9e+02 0.4 0.1 119 146 11 36 4 37 0.82 Redoxin Redoxin PF08534.10 147 pAY394560_00047 - 206 0.028 14.1 0.9 2 2 3e-05 0.18 11.5 0.1 49 76 144 173 138 191 0.79 Redoxin YnfE PF17452.2 78 pAY394560_00047 - 206 0.12 12.6 0.1 1 3 2.1e-05 0.12 12.6 0.1 11 33 10 32 5 47 0.88 Uncharacterized YnfE-like YnfE PF17452.2 78 pAY394560_00047 - 206 0.12 12.6 0.1 2 3 0.31 1.8e+03 -0.7 0.3 36 50 143 157 136 185 0.64 Uncharacterized YnfE-like YnfE PF17452.2 78 pAY394560_00047 - 206 0.12 12.6 0.1 3 3 0.84 5e+03 -2.1 1.5 26 38 184 195 170 205 0.48 Uncharacterized YnfE-like Topoisom_bac PF01131.20 413 pAY394560_00048 - 730 2.7e-97 326.4 7.4 1 1 3.6e-100 3.8e-97 325.9 7.4 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pAY394560_00048 - 730 7.1e-12 45.5 2.2 1 2 1.3e-14 1.4e-11 44.5 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pAY394560_00048 - 730 7.1e-12 45.5 2.2 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pAY394560_00048 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pAY394560_00048 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pAY394560_00048 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pAY394560_00048 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pAY394560_00048 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pAY394560_00048 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pAY394560_00048 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pAY394560_00048 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pAY394560_00048 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pAY394560_00048 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pAY394560_00048 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pAY394560_00048 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pAY394560_00048 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pAY394560_00048 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pAY394560_00048 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 pAY394560_00048 - 730 0.096 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pAY394560_00048 - 730 0.096 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain EF-hand_8 PF13833.6 55 pAY394560_00048 - 730 0.1 12.5 0.0 1 1 0.00031 0.33 10.8 0.0 26 53 94 121 89 123 0.90 EF-hand domain pair HTH_34 PF13601.6 80 pAY394560_00048 - 730 0.44 10.8 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pAY394560_00048 - 730 0.44 10.8 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pAY394560_00048 - 730 0.44 10.8 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pAY394560_00048 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pAY394560_00048 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pAY394560_00048 - 730 0.63 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pAY394560_00048 - 730 0.63 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pAY394560_00048 - 730 0.74 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pAY394560_00048 - 730 0.74 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pAY394560_00048 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pAY394560_00048 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pAY394560_00048 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pAY394560_00048 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pAY394560_00049 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pAY394560_00049 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pAY394561_00001 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pAY394561_00001 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pAY394561_00001 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pAY394561_00001 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pAY394561_00001 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pAY394561_00001 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pAY394561_00001 - 639 0.00029 21.1 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pAY394561_00001 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pAY394561_00001 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pAY394561_00001 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 pAY394561_00001 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 pAY394561_00002 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pAY394561_00002 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 pAY394561_00004 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pAY394561_00004 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pAY394561_00004 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 pAY394561_00005 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pAY394561_00005 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pAY394561_00005 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pAY394561_00005 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pAY394561_00006 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pAY394561_00006 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 pAY394561_00007 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pAY394561_00007 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pAY394561_00007 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pAY394561_00007 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pAY394561_00007 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pAY394561_00007 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pAY394561_00007 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pAY394561_00007 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pAY394561_00007 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 pAY394561_00008 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pAY394561_00008 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pAY394561_00008 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pAY394561_00008 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pAY394561_00008 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pAY394561_00008 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pAY394561_00009 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pAY394561_00009 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pAY394561_00010 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pAY394561_00010 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pAY394561_00010 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pAY394561_00010 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pAY394561_00010 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pAY394561_00010 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pAY394561_00011 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pAY394561_00012 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pAY394561_00012 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pAY394561_00012 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 pAY394561_00012 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pAY394561_00012 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pAY394561_00012 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pAY394561_00012 - 1932 9.9e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pAY394561_00012 - 1932 9.9e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pAY394561_00012 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pAY394561_00012 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 pAY394561_00012 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pAY394561_00012 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 pAY394561_00013 - 234 0.0008 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pAY394561_00013 - 234 0.033 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 pAY394561_00014 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pAY394561_00014 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pAY394561_00015 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pAY394561_00015 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pAY394561_00015 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pAY394561_00015 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pAY394561_00015 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pAY394561_00015 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pAY394561_00015 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pAY394561_00015 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pAY394561_00015 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pAY394561_00015 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pAY394561_00015 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 pAY394561_00016 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pAY394561_00016 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pAY394561_00016 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pAY394561_00016 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pAY394561_00016 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 pAY394561_00018 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pAY394561_00018 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pAY394561_00019 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pAY394561_00019 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 pAY394561_00019 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pAY394561_00019 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pAY394561_00019 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pAY394561_00020 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pAY394561_00020 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) UBA_6 PF18039.1 42 pAY394561_00021 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 pAY394561_00021 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pAY394561_00021 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 pAY394561_00021 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 pAY394561_00022 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pAY394561_00022 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 pAY394561_00022 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pAY394561_00024 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pAY394561_00025 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pAY394561_00026 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pAY394561_00026 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pAY394561_00026 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pAY394561_00026 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pAY394561_00026 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pAY394561_00026 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pAY394561_00026 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pAY394561_00026 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pAY394561_00026 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pAY394561_00026 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pAY394561_00026 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pAY394561_00026 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 pAY394561_00027 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pAY394561_00027 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pAY394561_00027 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pAY394561_00027 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pAY394561_00027 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pAY394561_00027 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pAY394561_00027 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pAY394561_00027 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pAY394561_00027 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pAY394561_00027 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pAY394561_00028 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pAY394561_00028 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pAY394561_00028 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pAY394561_00030 - 87 3.5e-13 49.6 6.7 1 1 4.5e-17 4e-13 49.4 6.7 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pAY394561_00030 - 87 0.17 11.8 4.4 1 1 2.6e-05 0.23 11.3 4.4 78 135 37 87 9 87 0.70 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pAY394561_00031 - 883 4.8e-50 170.5 0.5 1 1 1.8e-53 1.1e-49 169.4 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pAY394561_00031 - 883 6.8e-21 74.3 1.2 1 1 2e-24 1.2e-20 73.5 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pAY394561_00031 - 883 0.045 13.2 0.1 1 1 1.5e-05 0.092 12.2 0.1 53 153 624 844 622 851 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pAY394561_00033 - 162 1.5e-21 76.7 0.1 1 1 1.5e-25 2.6e-21 76.0 0.1 16 88 12 96 5 96 0.79 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 pAY394561_00034 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pAY394561_00034 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pAY394561_00034 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pAY394561_00034 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pAY394561_00034 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pAY394561_00034 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pAY394561_00034 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pAY394561_00034 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pAY394561_00034 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pAY394561_00034 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pAY394561_00034 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pAY394561_00034 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pAY394561_00034 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pAY394561_00034 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pAY394561_00035 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pAY394561_00036 - 91 0.00046 19.9 6.9 1 2 5.3e-08 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pAY394561_00036 - 91 0.00046 19.9 6.9 2 2 0.014 1.3e+02 2.5 0.2 31 52 57 78 56 80 0.82 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pAY394561_00036 - 91 0.0053 17.3 1.0 1 1 6.9e-07 0.0062 17.1 1.0 21 87 9 81 1 85 0.90 FliG N-terminal domain T4SS PF07996.11 197 pAY394561_00037 - 323 7.9e-29 101.5 13.4 1 1 4e-32 1e-28 101.1 13.4 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pAY394561_00037 - 323 0.0081 16.3 0.6 1 2 0.99 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pAY394561_00037 - 323 0.0081 16.3 0.6 2 2 1.2e-05 0.03 14.5 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pAY394561_00037 - 323 0.014 16.1 5.0 1 2 0.046 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pAY394561_00037 - 323 0.014 16.1 5.0 2 2 5.3e-06 0.014 16.1 5.0 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 pAY394561_00037 - 323 0.043 14.5 0.8 1 2 2.2 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pAY394561_00037 - 323 0.043 14.5 0.8 2 2 1.7e-05 0.043 14.5 0.8 32 84 209 270 202 296 0.83 von Willebrand factor type A domain KNOX2 PF03791.13 48 pAY394561_00037 - 323 0.07 12.6 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pAY394561_00037 - 323 0.07 12.6 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain THOC7 PF05615.13 132 pAY394561_00037 - 323 1.2 9.4 11.3 1 2 0.00061 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pAY394561_00037 - 323 1.2 9.4 11.3 2 2 0.17 4.4e+02 1.1 6.3 16 71 231 294 202 315 0.50 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pAY394561_00037 - 323 3.5 7.1 7.2 1 2 0.19 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pAY394561_00037 - 323 3.5 7.1 7.2 2 2 0.00046 1.2 8.6 3.3 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein TrbL PF04610.14 215 pAY394561_00038 - 281 1.4e-31 110.0 32.1 1 1 1e-35 1.9e-31 109.5 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein Trep_dent_lipo PF09710.10 397 pAY394561_00039 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pAY394561_00039 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pAY394561_00040 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pAY394561_00040 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pAY394561_00041 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pAY394561_00041 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pAY394561_00041 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pAY394561_00042 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pAY394561_00042 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pAY394561_00043 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pAY394561_00043 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pAY394561_00043 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pAY394561_00043 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pAY394561_00043 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pAY394561_00043 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pAY394561_00043 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pAY394561_00043 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pAY394561_00043 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pAY394561_00043 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pAY394561_00043 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pAY394561_00043 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pAY394561_00043 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pAY394561_00043 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pAY394561_00043 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pAY394561_00043 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pAY394561_00043 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pAY394561_00043 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pAY394561_00043 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pAY394561_00043 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pAY394561_00043 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pAY394561_00043 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pAY394561_00043 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pAY394561_00043 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pAY394561_00043 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pAY394561_00043 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pAY394561_00043 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pAY394561_00043 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pAY394561_00043 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pAY394561_00043 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pAY394561_00043 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pAY394561_00043 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pAY394561_00044 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pAY394561_00044 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pAY394561_00044 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pAY394561_00044 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pAY394561_00044 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pAY394561_00045 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pAY394561_00045 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pAY394561_00045 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pAY394561_00045 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pAY394561_00045 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pAY394561_00046 - 143 5.7e-29 101.1 0.5 1 1 3.6e-33 6.4e-29 100.9 0.5 1 90 24 115 24 139 0.90 TrbM PRELI PF04707.14 157 pAY394561_00047 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pAY394561_00047 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pAY394561_00047 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pAY394561_00047 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pAY394561_00047 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pAY394561_00047 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pAY394561_00049 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pAY394561_00049 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pAY394561_00050 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pAY394561_00050 - 730 5.6e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pAY394561_00050 - 730 5.6e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pAY394561_00050 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pAY394561_00050 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pAY394561_00050 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pAY394561_00050 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pAY394561_00050 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pAY394561_00050 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pAY394561_00050 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pAY394561_00050 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pAY394561_00050 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pAY394561_00050 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pAY394561_00050 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pAY394561_00050 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pAY394561_00050 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pAY394561_00050 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pAY394561_00050 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pAY394561_00050 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pAY394561_00050 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pAY394561_00050 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pAY394561_00050 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pAY394561_00050 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pAY394561_00050 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pAY394561_00050 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pAY394561_00050 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pAY394561_00050 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pAY394561_00050 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pAY394561_00050 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pAY394561_00050 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pAY394561_00050 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pAY394561_00050 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pAY394561_00050 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pAY394561_00050 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pAY394561_00051 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pAY394561_00051 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain Adenyl_transf PF04439.12 279 pAY701528_00002 - 288 1.2e-115 385.5 6.3 1 1 7.3e-120 1.3e-115 385.3 6.3 1 276 1 274 1 277 0.99 Streptomycin adenylyltransferase PcfJ PF14284.6 144 pAY701528_00003 - 233 2.9e-05 24.0 2.2 1 2 0.42 3.8e+03 -2.3 0.0 56 65 49 58 14 83 0.63 PcfJ-like protein PcfJ PF14284.6 144 pAY701528_00003 - 233 2.9e-05 24.0 2.2 2 2 3.2e-09 2.9e-05 24.0 2.2 3 133 90 216 88 226 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pAY701528_00003 - 233 0.0053 16.7 3.0 1 1 1.6e-06 0.015 15.3 3.0 37 126 71 205 10 215 0.75 Intein splicing domain GTP_EFTU PF00009.27 194 pAY701528_00005 - 639 8.9e-59 198.3 0.3 1 1 6.3e-62 1.2e-58 197.8 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pAY701528_00005 - 639 2.6e-23 82.1 0.0 1 2 1.4 2.8e+03 -1.9 0.0 81 97 63 79 58 99 0.70 Elongation factor G, domain IV EFG_IV PF03764.18 121 pAY701528_00005 - 639 2.6e-23 82.1 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pAY701528_00005 - 639 8.5e-17 61.0 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pAY701528_00005 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pAY701528_00005 - 639 9.7e-07 28.9 0.1 1 1 1.2e-09 2.4e-06 27.6 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pAY701528_00005 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pAY701528_00005 - 639 0.018 14.9 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pAY701528_00005 - 639 0.021 14.1 0.1 1 1 2e-05 0.039 13.2 0.1 9 76 8 82 3 90 0.72 Septin AIG1 PF04548.16 212 pAY701528_00005 - 639 0.043 13.1 0.0 1 1 5.4e-05 0.11 11.8 0.0 32 62 51 81 43 109 0.83 AIG1 family DUF4111 PF13427.6 103 pAY701528_00007 - 258 2.6e-26 91.8 0.0 1 3 0.88 3.2e+03 -1.6 0.0 60 80 3 23 2 25 0.81 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pAY701528_00007 - 258 2.6e-26 91.8 0.0 2 3 2.3 8.4e+03 -3.0 0.0 8 22 52 66 50 72 0.73 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pAY701528_00007 - 258 2.6e-26 91.8 0.0 3 3 3.2e-29 1.1e-25 89.7 0.0 1 103 148 250 148 250 0.98 Domain of unknown function (DUF4111) Polbeta PF18765.1 93 pAY701528_00007 - 258 1.1e-09 38.2 0.0 1 2 1.5e-12 5.4e-09 36.0 0.0 8 74 22 92 11 97 0.77 Polymerase beta, Nucleotidyltransferase Polbeta PF18765.1 93 pAY701528_00007 - 258 1.1e-09 38.2 0.0 2 2 0.56 2e+03 -1.1 0.0 17 42 103 134 98 151 0.71 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 95 pAY701528_00007 - 258 3e-06 27.4 0.0 1 1 1.8e-09 6.5e-06 26.4 0.0 14 75 25 88 11 105 0.75 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 199 pAY701528_00007 - 258 0.00019 21.4 0.0 1 1 8.4e-08 0.0003 20.7 0.0 88 138 21 71 3 83 0.86 Adenylate cyclase NT domain MdcG PF10620.9 199 pAY701528_00007 - 258 0.2 11.4 0.1 1 2 0.00019 0.67 9.7 0.0 123 154 36 67 3 74 0.76 Phosphoribosyl-dephospho-CoA transferase MdcG MdcG PF10620.9 199 pAY701528_00007 - 258 0.2 11.4 0.1 2 2 0.44 1.6e+03 -1.3 0.1 166 189 234 257 217 258 0.80 Phosphoribosyl-dephospho-CoA transferase MdcG AAA_18 PF13238.6 130 pAY701528_00008 - 181 4.8e-14 53.0 0.0 1 1 1.4e-16 6.3e-14 52.6 0.0 1 122 7 133 7 141 0.86 AAA domain AAA_33 PF13671.6 143 pAY701528_00008 - 181 2.4e-10 40.8 0.0 1 1 6.7e-13 2.9e-10 40.4 0.0 2 136 7 144 6 147 0.81 AAA domain CPT PF07931.12 174 pAY701528_00008 - 181 7.5e-10 38.9 0.0 1 1 3.3e-12 1.4e-09 38.0 0.0 1 172 4 172 4 174 0.80 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 199 pAY701528_00008 - 181 1.5e-07 30.9 0.0 1 1 8.2e-10 3.6e-07 29.7 0.0 18 160 6 138 2 172 0.74 Zeta toxin AAA PF00004.29 132 pAY701528_00008 - 181 1.1e-05 25.8 0.1 1 2 1.8e-07 7.7e-05 23.1 0.0 2 34 8 41 7 84 0.77 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pAY701528_00008 - 181 1.1e-05 25.8 0.1 2 2 2.5 1.1e+03 -0.0 0.0 105 131 109 135 92 136 0.71 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 136 pAY701528_00008 - 181 2.1e-05 25.0 0.0 1 1 8.4e-08 3.7e-05 24.2 0.0 1 128 10 131 10 138 0.79 AAA domain AAA_28 PF13521.6 163 pAY701528_00008 - 181 0.00017 21.9 0.0 1 2 9.1e-07 0.0004 20.7 0.0 2 62 7 71 6 85 0.62 AAA domain AAA_28 PF13521.6 163 pAY701528_00008 - 181 0.00017 21.9 0.0 2 2 7.8 3.4e+03 -1.9 0.0 112 129 108 127 94 157 0.52 AAA domain AAA_22 PF13401.6 137 pAY701528_00008 - 181 0.00023 21.4 0.0 1 2 2.3e-06 0.00099 19.4 0.0 4 33 3 32 1 84 0.83 AAA domain AAA_22 PF13401.6 137 pAY701528_00008 - 181 0.00023 21.4 0.0 2 2 2.3 1e+03 -0.1 0.0 61 98 120 156 96 171 0.74 AAA domain AAA_14 PF13173.6 131 pAY701528_00008 - 181 0.0008 19.4 0.0 1 1 2.9e-06 0.0013 18.8 0.0 2 123 4 137 3 145 0.70 AAA domain RuvB_N PF05496.12 159 pAY701528_00008 - 181 0.0023 17.7 0.1 1 2 1.3e-05 0.0057 16.4 0.0 36 60 7 31 3 49 0.85 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 pAY701528_00008 - 181 0.0023 17.7 0.1 2 2 8.3 3.6e+03 -2.5 0.0 98 114 113 129 105 160 0.72 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 146 pAY701528_00008 - 181 0.0023 18.3 0.0 1 1 9.7e-06 0.0042 17.4 0.0 9 35 3 29 1 75 0.87 AAA domain ABC_tran PF00005.27 137 pAY701528_00008 - 181 0.0028 18.1 0.2 1 1 7.3e-06 0.0032 18.0 0.2 9 45 2 37 1 172 0.83 ABC transporter KTI12 PF08433.10 272 pAY701528_00008 - 181 0.0044 16.5 0.1 1 2 2.1e-05 0.0092 15.5 0.0 3 42 6 44 5 88 0.73 Chromatin associated protein KTI12 KTI12 PF08433.10 272 pAY701528_00008 - 181 0.0044 16.5 0.1 2 2 3.9 1.7e+03 -1.8 0.0 111 122 117 128 97 167 0.56 Chromatin associated protein KTI12 AAA_16 PF13191.6 170 pAY701528_00008 - 181 0.0046 17.4 0.0 1 1 1.3e-05 0.0056 17.1 0.0 22 63 2 44 1 147 0.84 AAA ATPase domain DUF2075 PF09848.9 363 pAY701528_00008 - 181 0.0048 16.2 0.4 1 1 1.3e-05 0.0056 16.0 0.4 2 29 5 32 4 146 0.90 Uncharacterized conserved protein (DUF2075) ATPase_2 PF01637.18 233 pAY701528_00008 - 181 0.0076 16.2 0.4 1 2 0.0049 2.2 8.2 0.0 19 49 3 32 1 50 0.75 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pAY701528_00008 - 181 0.0076 16.2 0.4 2 2 0.018 7.8 6.3 0.2 48 112 102 172 93 180 0.65 ATPase domain predominantly from Archaea APS_kinase PF01583.20 158 pAY701528_00008 - 181 0.0079 16.1 0.0 1 2 0.00041 0.18 11.7 0.0 1 46 3 46 3 95 0.64 Adenylylsulphate kinase APS_kinase PF01583.20 158 pAY701528_00008 - 181 0.0079 16.1 0.0 2 2 0.24 1e+02 2.7 0.0 45 77 119 151 97 175 0.82 Adenylylsulphate kinase Rad17 PF03215.15 186 pAY701528_00008 - 181 0.0086 16.0 0.0 1 2 9e-05 0.039 13.9 0.0 45 71 4 30 1 40 0.88 Rad17 P-loop domain Rad17 PF03215.15 186 pAY701528_00008 - 181 0.0086 16.0 0.0 2 2 2 8.8e+02 -0.3 0.0 113 146 110 145 100 167 0.71 Rad17 P-loop domain T2SSE PF00437.20 273 pAY701528_00008 - 181 0.0086 15.2 0.0 1 2 3.7e-05 0.016 14.3 0.0 130 158 5 33 1 75 0.82 Type II/IV secretion system protein T2SSE PF00437.20 273 pAY701528_00008 - 181 0.0086 15.2 0.0 2 2 3.7 1.6e+03 -2.1 0.0 25 25 140 140 100 177 0.50 Type II/IV secretion system protein AAA_30 PF13604.6 192 pAY701528_00008 - 181 0.0092 15.7 0.1 1 1 3.6e-05 0.016 15.0 0.1 17 40 3 26 1 39 0.82 AAA domain ATPase PF06745.13 231 pAY701528_00008 - 181 0.0098 15.3 1.3 1 2 3.9e-05 0.017 14.5 0.1 18 37 3 22 1 35 0.87 KaiC ATPase PF06745.13 231 pAY701528_00008 - 181 0.0098 15.3 1.3 2 2 1.9 8.2e+02 -0.8 0.1 100 112 129 141 99 176 0.47 KaiC AAA_24 PF13479.6 197 pAY701528_00008 - 181 0.0099 15.6 0.8 1 1 3.1e-05 0.014 15.2 0.8 3 23 5 30 3 173 0.84 AAA domain Ploopntkinase1 PF18748.1 196 pAY701528_00008 - 181 0.011 15.3 0.1 1 2 0.097 42 3.6 0.0 16 41 3 28 1 41 0.82 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 pAY701528_00008 - 181 0.011 15.3 0.1 2 2 0.0011 0.46 10.0 0.0 93 165 72 144 54 168 0.77 P-loop Nucleotide Kinase1 SRP54 PF00448.22 196 pAY701528_00008 - 181 0.014 15.1 0.2 1 2 7e-05 0.031 13.9 0.1 3 40 6 42 4 49 0.84 SRP54-type protein, GTPase domain SRP54 PF00448.22 196 pAY701528_00008 - 181 0.014 15.1 0.2 2 2 5.7 2.5e+03 -2.1 0.0 71 80 118 127 97 169 0.56 SRP54-type protein, GTPase domain DnaB_C PF03796.15 255 pAY701528_00008 - 181 0.016 14.6 0.6 1 2 0.00029 0.13 11.6 0.0 17 47 2 32 1 42 0.83 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pAY701528_00008 - 181 0.016 14.6 0.6 2 2 0.38 1.7e+02 1.4 0.2 48 116 103 164 96 178 0.48 DnaB-like helicase C terminal domain NTPase_1 PF03266.15 168 pAY701528_00008 - 181 0.021 14.8 0.6 1 2 0.00011 0.049 13.5 0.3 2 22 7 27 6 35 0.85 NTPase NTPase_1 PF03266.15 168 pAY701528_00008 - 181 0.021 14.8 0.6 2 2 3.5 1.5e+03 -1.1 0.0 82 82 116 116 62 168 0.64 NTPase TIP49 PF06068.13 351 pAY701528_00008 - 181 0.034 13.3 0.3 1 2 0.00026 0.11 11.6 0.0 50 77 4 31 1 46 0.84 TIP49 P-loop domain TIP49 PF06068.13 351 pAY701528_00008 - 181 0.034 13.3 0.3 2 2 1.3 5.9e+02 -0.6 0.2 142 182 120 160 100 174 0.71 TIP49 P-loop domain Sigma54_activat PF00158.26 168 pAY701528_00008 - 181 0.038 13.7 0.0 1 1 0.00015 0.066 12.9 0.0 25 68 7 57 1 89 0.76 Sigma-54 interaction domain dNK PF01712.19 204 pAY701528_00008 - 181 0.039 13.8 0.2 1 2 0.0021 0.94 9.3 0.0 1 52 7 75 7 77 0.66 Deoxynucleoside kinase dNK PF01712.19 204 pAY701528_00008 - 181 0.039 13.8 0.2 2 2 0.24 1.1e+02 2.6 0.2 114 156 98 137 92 173 0.64 Deoxynucleoside kinase Cytidylate_kin2 PF13189.6 179 pAY701528_00008 - 181 0.055 13.6 1.9 1 2 0.045 19 5.3 0.2 1 23 6 28 6 34 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 pAY701528_00008 - 181 0.055 13.6 1.9 2 2 0.0058 2.5 8.2 0.1 107 147 98 138 30 143 0.82 Cytidylate kinase-like family PhoH PF02562.16 205 pAY701528_00008 - 181 0.065 12.7 0.1 1 1 0.00033 0.14 11.5 0.1 18 49 3 34 1 36 0.84 PhoH-like protein AAA_11 PF13086.6 261 pAY701528_00008 - 181 0.067 13.0 1.4 1 1 0.00028 0.12 12.1 1.4 16 42 3 29 1 176 0.85 AAA domain RNA_helicase PF00910.22 107 pAY701528_00008 - 181 0.082 13.3 0.0 1 1 0.00036 0.16 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase AAA_25 PF13481.6 194 pAY701528_00008 - 181 0.084 12.4 0.2 1 3 0.0012 0.5 9.9 0.1 32 51 3 22 1 28 0.86 AAA domain AAA_25 PF13481.6 194 pAY701528_00008 - 181 0.084 12.4 0.2 2 3 6.3 2.8e+03 -2.3 0.0 118 174 56 74 30 84 0.49 AAA domain AAA_25 PF13481.6 194 pAY701528_00008 - 181 0.084 12.4 0.2 3 3 1.6 7.2e+02 -0.4 0.0 61 90 94 122 90 169 0.69 AAA domain MKT1_N PF12247.8 90 pAY701528_00008 - 181 0.088 13.2 0.0 1 1 0.00063 0.27 11.6 0.0 14 51 39 74 37 153 0.89 Temperature dependent protein affecting M2 dsRNA replication ATP-synt_ab PF00006.25 213 pAY701528_00008 - 181 0.11 12.1 0.0 1 1 0.00035 0.15 11.7 0.0 13 46 3 35 1 127 0.73 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.12 166 pAY701528_00008 - 181 0.12 12.3 0.0 1 1 0.0004 0.17 11.8 0.0 1 40 5 45 5 73 0.78 NACHT domain AAA_7 PF12775.7 181 pAY701528_00008 - 181 0.14 11.7 0.3 1 2 0.00065 0.28 10.7 0.1 31 63 2 34 1 46 0.80 P-loop containing dynein motor region AAA_7 PF12775.7 181 pAY701528_00008 - 181 0.14 11.7 0.3 2 2 4.7 2e+03 -1.9 0.0 61 90 103 132 96 167 0.63 P-loop containing dynein motor region CoaE PF01121.20 179 pAY701528_00008 - 181 0.16 11.7 0.9 1 2 0.021 9.3 5.9 0.1 2 22 6 26 5 32 0.87 Dephospho-CoA kinase CoaE PF01121.20 179 pAY701528_00008 - 181 0.16 11.7 0.9 2 2 0.053 23 4.6 0.1 125 149 108 132 96 169 0.85 Dephospho-CoA kinase Hydin_ADK PF17213.3 198 pAY701528_00008 - 181 0.28 11.4 1.0 1 1 0.0009 0.4 10.9 0.2 2 22 7 27 6 32 0.91 Hydin Adenylate kinase-like domain DpnD-PcfM PF14207.6 46 pAY701528_00008 - 181 2.7 8.0 4.9 1 3 0.16 69 3.4 0.1 25 41 98 114 97 115 0.89 DpnD/PcfM-like protein DpnD-PcfM PF14207.6 46 pAY701528_00008 - 181 2.7 8.0 4.9 2 3 0.032 14 5.7 0.3 6 33 116 143 116 144 0.91 DpnD/PcfM-like protein DpnD-PcfM PF14207.6 46 pAY701528_00008 - 181 2.7 8.0 4.9 3 3 9.6 4.2e+03 -2.3 0.1 12 30 154 172 153 172 0.79 DpnD/PcfM-like protein APH PF01636.23 240 pAY701528_00009 - 265 1.2e-15 58.1 0.0 1 2 3.4e-18 7.6e-15 55.5 0.0 5 211 9 207 5 221 0.84 Phosphotransferase enzyme family APH PF01636.23 240 pAY701528_00009 - 265 1.2e-15 58.1 0.0 2 2 0.16 3.5e+02 0.9 0.0 58 98 220 261 209 265 0.83 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pAY701528_00009 - 265 1.8e-09 37.5 5.3 1 1 1.5e-12 3.4e-09 36.6 4.7 45 186 72 205 66 229 0.85 Choline/ethanolamine kinase EcKinase PF02958.20 294 pAY701528_00009 - 265 0.00022 20.7 0.7 1 3 1.3 3e+03 -2.8 0.0 90 108 22 40 11 45 0.79 Ecdysteroid kinase EcKinase PF02958.20 294 pAY701528_00009 - 265 0.00022 20.7 0.7 2 3 9.7e-08 0.00022 20.7 0.7 148 262 90 207 73 216 0.59 Ecdysteroid kinase EcKinase PF02958.20 294 pAY701528_00009 - 265 0.00022 20.7 0.7 3 3 0.48 1.1e+03 -1.3 0.0 264 292 234 261 216 263 0.68 Ecdysteroid kinase Fructosamin_kin PF03881.14 288 pAY701528_00009 - 265 0.023 13.9 0.6 1 2 0.69 1.5e+03 -1.9 0.0 52 75 34 57 13 64 0.60 Fructosamine kinase Fructosamin_kin PF03881.14 288 pAY701528_00009 - 265 0.023 13.9 0.6 2 2 2.2e-05 0.05 12.8 0.3 189 241 165 220 113 231 0.73 Fructosamine kinase Ribosomal_S13 PF00416.22 128 pAY701528_00009 - 265 0.029 14.8 1.8 1 3 1.6 3.6e+03 -1.7 0.0 73 102 32 61 26 65 0.69 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 pAY701528_00009 - 265 0.029 14.8 1.8 2 3 3.4e-05 0.076 13.4 0.1 37 91 115 173 82 187 0.81 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 pAY701528_00009 - 265 0.029 14.8 1.8 3 3 1.2 2.7e+03 -1.3 0.1 51 76 228 254 215 264 0.54 Ribosomal protein S13/S18 YppF PF14178.6 59 pAY701528_00009 - 265 0.37 10.7 4.0 1 2 0.00047 1.1 9.2 0.1 25 41 113 129 99 138 0.86 YppF-like protein YppF PF14178.6 59 pAY701528_00009 - 265 0.37 10.7 4.0 2 2 0.17 3.7e+02 1.1 1.0 20 42 154 176 131 178 0.84 YppF-like protein ABC2_membrane_3 PF12698.7 345 pAY701528_00009 - 265 0.69 9.0 6.6 1 2 0.051 1.1e+02 1.7 0.5 85 132 9 54 4 68 0.70 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 345 pAY701528_00009 - 265 0.69 9.0 6.6 2 2 9.8e-05 0.22 10.6 0.9 20 116 74 184 71 257 0.71 ABC-2 family transporter protein BLOC1_2 PF10046.9 96 pAY701528_00009 - 265 3.3 8.1 9.1 1 4 0.00048 1.1 9.6 0.3 12 47 14 49 6 55 0.86 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pAY701528_00009 - 265 3.3 8.1 9.1 2 4 0.15 3.3e+02 1.7 0.9 40 81 95 132 87 146 0.48 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pAY701528_00009 - 265 3.3 8.1 9.1 3 4 0.32 7.2e+02 0.6 0.2 9 25 119 135 116 156 0.71 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pAY701528_00009 - 265 3.3 8.1 9.1 4 4 1 2.3e+03 -1.0 0.1 54 68 248 262 232 264 0.55 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4111 PF13427.6 103 pAY701528_00010 - 264 1.6e-23 82.9 0.0 1 2 0.75 3.4e+03 -1.7 0.0 15 30 10 25 7 29 0.79 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pAY701528_00010 - 264 1.6e-23 82.9 0.0 2 2 1.3e-26 5.6e-23 81.1 0.0 1 100 152 249 152 251 0.96 Domain of unknown function (DUF4111) NTP_transf_2 PF01909.23 95 pAY701528_00010 - 264 1.2e-06 28.7 0.6 1 1 5.4e-10 2.4e-06 27.7 0.5 4 48 18 99 11 163 0.69 Nucleotidyltransferase domain Polbeta PF18765.1 93 pAY701528_00010 - 264 0.00032 20.7 0.1 1 1 2e-07 0.00088 19.3 0.1 3 63 18 80 16 98 0.70 Polymerase beta, Nucleotidyltransferase Adenyl_cycl_N PF12633.7 199 pAY701528_00010 - 264 0.022 14.6 0.0 1 1 7.8e-06 0.035 14.0 0.0 89 152 23 87 4 98 0.81 Adenylate cyclase NT domain Acetyltransf_1 PF00583.25 117 pAY701528_00011 - 142 9e-17 61.4 0.0 1 1 4.3e-20 1.1e-16 61.1 0.0 19 116 25 123 7 124 0.83 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 127 pAY701528_00011 - 142 1.4e-09 38.0 0.0 1 1 6.9e-13 1.8e-09 37.6 0.0 20 105 28 123 7 131 0.86 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 76 pAY701528_00011 - 142 4.8e-08 33.3 0.1 1 1 3.1e-11 7.8e-08 32.6 0.1 5 73 41 123 37 123 0.68 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 pAY701528_00011 - 142 0.0013 18.7 0.0 1 1 7.7e-07 0.002 18.1 0.0 23 79 69 126 48 133 0.85 FR47-like protein Acetyltransf_CG PF14542.6 80 pAY701528_00011 - 142 0.0045 17.1 0.0 1 1 3.1e-06 0.0078 16.3 0.0 19 55 62 98 41 101 0.80 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 138 pAY701528_00011 - 142 0.007 17.0 0.0 1 1 3.2e-06 0.0082 16.8 0.0 49 136 35 123 4 125 0.77 Acetyltransferase (GNAT) domain MOZ_SAS PF01853.18 179 pAY701528_00011 - 142 0.034 13.8 0.0 1 1 1.6e-05 0.04 13.6 0.0 76 102 66 92 9 115 0.75 MOZ/SAS family APH PF01636.23 240 pAY701528_00012 - 297 2.3e-23 83.4 0.0 1 1 5e-27 3e-23 83.0 0.0 2 238 18 251 17 253 0.86 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pAY701528_00012 - 297 0.0019 17.8 1.2 1 1 7.7e-07 0.0046 16.6 1.2 68 175 112 211 101 226 0.72 Choline/ethanolamine kinase 120_Rick_ant PF12574.8 235 pAY701528_00012 - 297 0.12 11.5 2.5 1 2 0.00021 1.3 8.2 0.4 180 216 17 53 13 56 0.90 120 KDa Rickettsia surface antigen 120_Rick_ant PF12574.8 235 pAY701528_00012 - 297 0.12 11.5 2.5 2 2 0.0014 8.7 5.5 0.4 9 56 46 95 41 106 0.80 120 KDa Rickettsia surface antigen HTH_23 PF13384.6 50 pAY701528_00013 - 167 0.0036 17.1 0.0 1 2 1.8e-05 0.045 13.6 0.0 21 37 41 57 34 66 0.91 Homeodomain-like domain HTH_23 PF13384.6 50 pAY701528_00013 - 167 0.0036 17.1 0.0 2 2 0.15 3.8e+02 1.0 0.0 32 48 96 110 94 112 0.83 Homeodomain-like domain HTH_17 PF12728.7 51 pAY701528_00013 - 167 0.046 13.9 0.7 1 2 0.00047 1.2 9.4 0.1 7 35 43 70 40 74 0.81 Helix-turn-helix domain HTH_17 PF12728.7 51 pAY701528_00013 - 167 0.046 13.9 0.7 2 2 0.056 1.4e+02 2.7 0.0 15 40 95 121 95 133 0.69 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 pAY701528_00013 - 167 0.068 12.9 0.0 1 1 7.7e-05 0.2 11.4 0.0 32 47 43 58 40 59 0.92 Sigma-70, region 4 HTH_28 PF13518.6 52 pAY701528_00013 - 167 0.097 12.8 0.0 1 1 7e-05 0.18 12.0 0.0 14 30 39 55 25 58 0.84 Helix-turn-helix domain HTH_11 PF08279.12 55 pAY701528_00013 - 167 0.12 12.4 0.1 1 1 0.00012 0.31 11.0 0.1 19 35 41 57 24 68 0.85 HTH domain HU-CCDC81_euk_2 PF18289.1 75 pAY701528_00013 - 167 0.12 12.6 0.0 1 1 9.2e-05 0.23 11.6 0.0 4 25 37 58 34 68 0.86 CCDC81 eukaryotic HU domain 2 HTH_Tnp_ISL3 PF13542.6 52 pAY701528_00013 - 167 0.16 11.4 0.0 1 1 0.00012 0.32 10.5 0.0 28 48 38 58 35 59 0.85 Helix-turn-helix domain of transposase family ISL3 HxlR PF01638.17 91 pAY701528_00014 - 103 2.7e-22 78.4 0.0 1 1 1.6e-25 3.2e-22 78.2 0.0 1 71 30 100 30 103 0.97 HxlR-like helix-turn-helix HTH_5 PF01022.20 47 pAY701528_00014 - 103 0.00012 21.9 0.0 1 1 1e-07 0.00021 21.1 0.0 7 46 39 79 38 80 0.95 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 61 pAY701528_00014 - 103 0.00023 21.1 0.0 1 1 1.8e-07 0.00036 20.5 0.0 15 57 39 81 38 82 0.94 Helix-turn-helix domain MarR PF01047.22 59 pAY701528_00014 - 103 0.00035 20.4 0.0 1 1 3e-07 0.00059 19.7 0.0 16 51 46 82 41 85 0.92 MarR family MarR_2 PF12802.7 62 pAY701528_00014 - 103 0.00061 19.6 0.0 1 1 5e-07 0.00099 19.0 0.0 10 54 39 81 38 85 0.89 MarR family PadR PF03551.14 75 pAY701528_00014 - 103 0.0015 18.5 0.1 1 1 1.2e-06 0.0024 17.8 0.1 27 71 58 100 48 102 0.85 Transcriptional regulator PadR-like family HTH_34 PF13601.6 80 pAY701528_00014 - 103 0.0064 16.6 0.0 1 1 4.5e-06 0.0089 16.2 0.0 12 66 45 99 38 101 0.82 Winged helix DNA-binding domain DUF1495 PF07381.11 90 pAY701528_00014 - 103 0.12 12.2 0.0 1 2 0.87 1.7e+03 -1.1 0.0 4 20 29 45 26 65 0.64 Winged helix DNA-binding domain (DUF1495) DUF1495 PF07381.11 90 pAY701528_00014 - 103 0.12 12.2 0.0 2 2 0.00021 0.42 10.5 0.0 57 86 70 101 66 102 0.76 Winged helix DNA-binding domain (DUF1495) Replic_Relax PF13814.6 192 pAY701528_00014 - 103 0.15 12.1 0.0 1 1 0.00012 0.23 11.5 0.0 18 68 56 101 50 102 0.78 Replication-relaxation Putative_PNPOx PF01243.20 88 pAY701528_00015 - 133 4.3e-12 46.0 0.0 1 1 1e-15 6.2e-12 45.5 0.0 3 87 5 85 3 86 0.97 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 149 pAY701528_00015 - 133 3.7e-06 26.6 0.0 1 1 6.8e-10 4.1e-06 26.5 0.0 2 98 3 95 2 127 0.84 Pyridoxamine 5'-phosphate oxidase like Pyridox_ox_2 PF12900.7 141 pAY701528_00015 - 133 0.063 13.3 0.0 1 1 1.2e-05 0.072 13.1 0.0 3 62 5 66 3 108 0.84 Pyridoxamine 5'-phosphate oxidase IstB_IS21 PF01695.17 178 pAY701528_00016 - 252 1.2e-58 197.8 1.9 1 2 0.32 2.4e+02 1.3 0.1 80 124 4 48 2 55 0.84 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pAY701528_00016 - 252 1.2e-58 197.8 1.9 2 2 4.8e-61 3.6e-58 196.2 0.2 5 178 58 231 52 231 0.98 IstB-like ATP binding protein Bac_DnaA PF00308.18 219 pAY701528_00016 - 252 1.3e-08 35.0 0.6 1 2 4.1 3.1e+03 -2.2 0.1 90 115 25 50 12 67 0.60 Bacterial dnaA protein Bac_DnaA PF00308.18 219 pAY701528_00016 - 252 1.3e-08 35.0 0.6 2 2 1.7e-11 1.3e-08 35.0 0.6 37 136 103 200 97 230 0.89 Bacterial dnaA protein RNA_helicase PF00910.22 107 pAY701528_00016 - 252 1.7e-05 25.1 0.4 1 2 0.24 1.8e+02 2.6 0.1 41 97 24 80 4 83 0.71 RNA helicase RNA_helicase PF00910.22 107 pAY701528_00016 - 252 1.7e-05 25.1 0.4 2 2 6.3e-07 0.00047 20.5 0.0 1 74 103 187 103 206 0.86 RNA helicase PhoH PF02562.16 205 pAY701528_00016 - 252 3.5e-05 23.4 0.0 1 1 1.1e-07 8.2e-05 22.2 0.0 12 75 93 155 80 185 0.76 PhoH-like protein AAA_22 PF13401.6 137 pAY701528_00016 - 252 5.3e-05 23.5 0.2 1 2 3.9e-05 0.029 14.6 0.1 5 48 100 137 95 143 0.80 AAA domain AAA_22 PF13401.6 137 pAY701528_00016 - 252 5.3e-05 23.5 0.2 2 2 0.013 9.4 6.5 0.0 80 115 146 189 129 200 0.67 AAA domain AAA PF00004.29 132 pAY701528_00016 - 252 6.8e-05 23.3 0.1 1 1 1.6e-07 0.00012 22.5 0.1 1 74 103 176 103 230 0.70 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 168 pAY701528_00016 - 252 7.7e-05 22.5 0.1 1 2 6.9e-06 0.0051 16.5 0.0 18 66 96 144 84 152 0.85 Sigma-54 interaction domain Sigma54_activat PF00158.26 168 pAY701528_00016 - 252 7.7e-05 22.5 0.1 2 2 0.06 45 3.7 0.0 96 122 164 191 155 204 0.76 Sigma-54 interaction domain AAA_16 PF13191.6 170 pAY701528_00016 - 252 8.1e-05 23.1 0.0 1 1 2e-07 0.00015 22.2 0.0 25 103 101 168 91 224 0.74 AAA ATPase domain CbiA PF01656.23 128 pAY701528_00016 - 252 0.00047 20.2 0.0 1 1 1.1e-06 0.00079 19.5 0.0 3 43 104 144 103 250 0.64 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.6 197 pAY701528_00016 - 252 0.00062 19.5 0.7 1 1 2.1e-06 0.0016 18.2 0.7 2 76 100 172 99 210 0.76 AAA domain AAA_14 PF13173.6 131 pAY701528_00016 - 252 0.00073 19.6 0.3 1 2 4.1 3.1e+03 -1.8 0.1 52 75 23 43 3 65 0.48 AAA domain AAA_14 PF13173.6 131 pAY701528_00016 - 252 0.00073 19.6 0.3 2 2 9.8e-07 0.00073 19.6 0.3 3 89 101 189 99 228 0.67 AAA domain AAA_7 PF12775.7 181 pAY701528_00016 - 252 0.00099 18.7 0.1 1 2 3.6e-06 0.0027 17.3 0.0 29 91 96 157 85 169 0.86 P-loop containing dynein motor region AAA_7 PF12775.7 181 pAY701528_00016 - 252 0.00099 18.7 0.1 2 2 7.2 5.4e+03 -3.3 0.0 23 178 218 233 209 237 0.56 P-loop containing dynein motor region AFG1_ATPase PF03969.16 362 pAY701528_00016 - 252 0.0026 16.7 0.1 1 1 4.9e-06 0.0036 16.2 0.1 24 208 64 242 44 248 0.73 AFG1-like ATPase NTPase_1 PF03266.15 168 pAY701528_00016 - 252 0.0033 17.4 1.3 1 2 0.032 24 4.8 0.2 1 20 102 121 102 132 0.80 NTPase NTPase_1 PF03266.15 168 pAY701528_00016 - 252 0.0033 17.4 1.3 2 2 0.00018 0.14 12.1 0.1 67 129 125 198 116 218 0.77 NTPase NACHT PF05729.12 166 pAY701528_00016 - 252 0.0033 17.4 0.2 1 1 1.8e-05 0.014 15.4 0.1 3 38 103 133 101 200 0.76 NACHT domain AAA_25 PF13481.6 194 pAY701528_00016 - 252 0.0075 15.9 0.3 1 3 1.3 9.9e+02 -0.8 0.0 126 158 16 50 5 74 0.68 AAA domain AAA_25 PF13481.6 194 pAY701528_00016 - 252 0.0075 15.9 0.3 2 3 0.0001 0.077 12.6 0.0 29 60 96 127 67 133 0.89 AAA domain AAA_25 PF13481.6 194 pAY701528_00016 - 252 0.0075 15.9 0.3 3 3 0.96 7.1e+02 -0.4 0.0 131 150 150 169 132 179 0.87 AAA domain AAA_5 PF07728.14 138 pAY701528_00016 - 252 0.014 15.4 0.1 1 2 3.6 2.7e+03 -1.7 0.0 12 34 34 56 33 59 0.87 AAA domain (dynein-related subfamily) AAA_5 PF07728.14 138 pAY701528_00016 - 252 0.014 15.4 0.1 2 2 6.1e-05 0.045 13.7 0.1 1 30 102 132 102 192 0.78 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 167 pAY701528_00016 - 252 0.016 15.1 1.3 1 2 2 1.5e+03 -1.1 0.0 33 63 5 37 2 75 0.56 RsgA GTPase RsgA_GTPase PF03193.16 167 pAY701528_00016 - 252 0.016 15.1 1.3 2 2 4.9e-05 0.037 13.9 0.0 82 119 83 120 68 137 0.78 RsgA GTPase Roc PF08477.13 120 pAY701528_00016 - 252 0.032 14.5 0.0 1 1 0.00012 0.088 13.0 0.0 2 21 103 122 102 158 0.72 Ras of Complex, Roc, domain of DAPkinase AAA_33 PF13671.6 143 pAY701528_00016 - 252 0.045 13.9 0.0 1 1 0.0001 0.075 13.2 0.0 2 93 103 217 103 230 0.71 AAA domain AAA_29 PF13555.6 61 pAY701528_00016 - 252 0.072 12.8 0.2 1 2 1.3 9.7e+02 -0.4 0.0 37 57 36 57 34 60 0.74 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pAY701528_00016 - 252 0.072 12.8 0.2 2 2 0.00075 0.56 10.0 0.0 8 38 84 116 82 124 0.79 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 213 pAY701528_00016 - 252 0.1 12.2 0.1 1 2 0.58 4.3e+02 0.4 0.0 167 203 18 54 15 62 0.85 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab PF00006.25 213 pAY701528_00016 - 252 0.1 12.2 0.1 2 2 0.0011 0.83 9.3 0.0 16 125 102 248 97 252 0.73 ATP synthase alpha/beta family, nucleotide-binding domain TsaE PF02367.17 125 pAY701528_00016 - 252 0.13 12.2 0.1 1 1 0.0004 0.3 11.1 0.1 19 74 100 164 80 207 0.66 Threonylcarbamoyl adenosine biosynthesis protein TsaE ResIII PF04851.15 171 pAY701528_00016 - 252 0.15 12.1 3.1 1 1 0.00023 0.17 11.8 2.4 21 82 88 155 29 233 0.70 Type III restriction enzyme, res subunit rve PF00665.26 119 pAY701528_00017 - 269 1.7e-13 50.8 0.0 1 1 3.8e-17 3.4e-13 49.8 0.0 29 115 1 97 1 99 0.97 Integrase core domain Phage_portal PF04860.12 314 pAY701528_00017 - 269 0.0087 15.3 0.8 1 2 2e-05 0.18 11.0 0.0 188 235 94 143 80 162 0.83 Phage portal protein Phage_portal PF04860.12 314 pAY701528_00017 - 269 0.0087 15.3 0.8 2 2 0.0057 51 2.9 0.2 36 89 172 227 153 264 0.69 Phage portal protein DDE_Tnp_IS1595 PF12762.7 153 pAY701528_00018 - 345 3.8e-15 56.2 1.0 1 1 5.1e-18 6.5e-15 55.5 1.0 2 145 147 299 146 301 0.81 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 46 pAY701528_00018 - 345 1.2e-06 28.4 1.3 1 1 2.3e-09 3e-06 27.1 1.3 7 45 38 80 36 81 0.91 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 35 pAY701528_00018 - 345 0.0007 19.3 6.9 1 2 5.5e-07 0.0007 19.3 6.9 8 34 52 78 51 79 0.98 InsA N-terminal domain Zn_Tnp_IS1 PF03811.13 35 pAY701528_00018 - 345 0.0007 19.3 6.9 2 2 3.9 5e+03 -2.7 0.1 15 23 200 208 196 210 0.70 InsA N-terminal domain HTH_30 PF13556.6 59 pAY701528_00018 - 345 0.013 15.3 0.0 1 1 2e-05 0.025 14.4 0.0 10 29 108 127 102 139 0.91 PucR C-terminal helix-turn-helix domain HTH_23 PF13384.6 50 pAY701528_00018 - 345 0.016 15.0 0.0 1 1 2.8e-05 0.036 13.9 0.0 16 40 109 133 102 139 0.87 Homeodomain-like domain PhnJ PF06007.11 275 pAY701528_00018 - 345 0.061 12.3 0.1 1 1 9.4e-05 0.12 11.3 0.1 218 266 32 78 25 88 0.91 Phosphonate metabolism protein PhnJ Lar_restr_allev PF14354.6 62 pAY701528_00018 - 345 0.062 13.7 3.3 1 1 4.9e-05 0.063 13.7 1.9 6 36 52 80 49 103 0.84 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 40 pAY701528_00018 - 345 0.063 13.4 0.7 1 2 0.096 1.2e+02 2.9 0.2 27 38 50 62 38 63 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pAY701528_00018 - 345 0.063 13.4 0.7 2 2 0.0025 3.2 7.9 0.0 6 16 73 83 72 93 0.86 Zinc ribbon domain A2L_zn_ribbon PF08792.10 33 pAY701528_00018 - 345 0.069 12.9 8.5 1 2 0.00042 0.54 10.0 0.2 20 32 48 60 47 61 0.86 A2L zinc ribbon domain A2L_zn_ribbon PF08792.10 33 pAY701528_00018 - 345 0.069 12.9 8.5 2 2 0.0019 2.4 8.0 0.1 22 32 73 83 71 84 0.87 A2L zinc ribbon domain zf-C2H2 PF00096.26 23 pAY701528_00018 - 345 0.22 12.0 0.2 1 2 2.7 3.5e+03 -1.2 0.9 2 7 51 56 51 63 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 pAY701528_00018 - 345 0.22 12.0 0.2 2 2 0.00017 0.22 12.0 0.2 1 10 73 82 73 87 0.92 Zinc finger, C2H2 type ADK_lid PF05191.14 36 pAY701528_00018 - 345 0.25 11.4 4.0 1 2 0.13 1.7e+02 2.3 1.0 2 10 50 58 50 68 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 pAY701528_00018 - 345 0.25 11.4 4.0 2 2 0.0014 1.8 8.6 0.1 1 11 72 82 72 93 0.87 Adenylate kinase, active site lid Nudix_N_2 PF14803.6 34 pAY701528_00018 - 345 0.73 9.8 8.7 1 1 0.0044 5.6 7.0 8.7 3 29 52 79 50 80 0.93 Nudix N-terminal DUF3268 PF11672.8 118 pAY701528_00018 - 345 0.82 10.0 5.1 1 2 0.013 17 5.8 3.0 4 41 51 83 48 142 0.84 zinc-finger-containing domain DUF3268 PF11672.8 118 pAY701528_00018 - 345 0.82 10.0 5.1 2 2 0.052 66 3.9 0.0 12 58 217 263 213 276 0.85 zinc-finger-containing domain TF_Zn_Ribbon PF08271.12 43 pAY701528_00018 - 345 5.5 6.6 7.1 1 2 0.2 2.6e+02 1.3 2.2 20 28 50 58 46 59 0.83 TFIIB zinc-binding TF_Zn_Ribbon PF08271.12 43 pAY701528_00018 - 345 5.5 6.6 7.1 2 2 0.041 53 3.4 6.8 2 37 51 92 50 95 0.77 TFIIB zinc-binding AAA_18 PF13238.6 130 pAY701528_00019 - 181 1.9e-14 54.3 0.0 1 1 6.3e-17 2.6e-14 53.9 0.0 1 122 7 133 7 141 0.78 AAA domain AAA_33 PF13671.6 143 pAY701528_00019 - 181 3.6e-10 40.2 0.0 1 1 1.3e-12 5.2e-10 39.6 0.0 2 135 7 143 6 146 0.79 AAA domain CPT PF07931.12 174 pAY701528_00019 - 181 1.6e-09 37.9 0.0 1 1 7.5e-12 3.1e-09 36.9 0.0 1 172 4 172 4 174 0.81 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 199 pAY701528_00019 - 181 1.6e-09 37.3 0.1 1 1 8e-12 3.3e-09 36.3 0.1 18 161 6 139 2 174 0.80 Zeta toxin AAA_28 PF13521.6 163 pAY701528_00019 - 181 7.3e-06 26.3 0.3 1 2 7.7e-08 3.1e-05 24.3 0.0 2 65 7 74 6 85 0.72 AAA domain AAA_28 PF13521.6 163 pAY701528_00019 - 181 7.3e-06 26.3 0.3 2 2 2.1 8.5e+02 0.1 0.1 70 88 139 160 88 178 0.45 AAA domain AAA PF00004.29 132 pAY701528_00019 - 181 1.1e-05 25.9 0.0 1 2 1e-07 4.1e-05 24.0 0.0 1 25 7 31 7 83 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pAY701528_00019 - 181 1.1e-05 25.9 0.0 2 2 3.2 1.3e+03 -0.2 0.0 109 131 113 135 96 172 0.72 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 137 pAY701528_00019 - 181 1.8e-05 25.0 0.0 1 2 1.8e-07 7.5e-05 23.0 0.0 4 43 3 42 1 87 0.83 AAA domain AAA_22 PF13401.6 137 pAY701528_00019 - 181 1.8e-05 25.0 0.0 2 2 2.4 9.9e+02 -0.0 0.0 62 85 121 143 91 180 0.53 AAA domain AAA_17 PF13207.6 136 pAY701528_00019 - 181 5.3e-05 23.7 0.1 1 1 5.2e-07 0.00021 21.7 0.1 1 128 10 131 10 139 0.75 AAA domain AAA_16 PF13191.6 170 pAY701528_00019 - 181 0.00029 21.3 0.0 1 1 8.5e-07 0.00035 21.0 0.0 22 62 2 43 1 147 0.78 AAA ATPase domain DUF2075 PF09848.9 363 pAY701528_00019 - 181 0.0011 18.3 0.2 1 1 3.2e-06 0.0013 18.0 0.2 2 27 5 32 4 132 0.90 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 131 pAY701528_00019 - 181 0.0014 18.7 0.0 1 1 5.5e-06 0.0022 18.0 0.0 2 123 4 137 3 145 0.59 AAA domain AAA_19 PF13245.6 146 pAY701528_00019 - 181 0.0015 18.9 0.2 1 2 7.8e-06 0.0032 17.8 0.0 9 39 3 33 1 51 0.84 AAA domain AAA_19 PF13245.6 146 pAY701528_00019 - 181 0.0015 18.9 0.2 2 2 9.8 4e+03 -2.0 0.0 116 116 131 131 97 172 0.60 AAA domain KTI12 PF08433.10 272 pAY701528_00019 - 181 0.0018 17.8 0.1 1 2 1.1e-05 0.0044 16.5 0.0 3 42 6 44 5 87 0.77 Chromatin associated protein KTI12 KTI12 PF08433.10 272 pAY701528_00019 - 181 0.0018 17.8 0.1 2 2 3.3 1.3e+03 -1.5 0.0 65 65 129 129 98 174 0.60 Chromatin associated protein KTI12 AAA_30 PF13604.6 192 pAY701528_00019 - 181 0.0021 17.8 0.1 1 1 9.6e-06 0.0039 16.9 0.1 17 40 3 26 1 39 0.84 AAA domain ABC_tran PF00005.27 137 pAY701528_00019 - 181 0.0043 17.6 0.0 1 1 1.1e-05 0.0046 17.5 0.0 9 51 2 43 1 172 0.81 ABC transporter TIP49 PF06068.13 351 pAY701528_00019 - 181 0.0046 16.2 0.3 1 2 3.8e-05 0.015 14.5 0.0 50 75 4 29 1 46 0.81 TIP49 P-loop domain TIP49 PF06068.13 351 pAY701528_00019 - 181 0.0046 16.2 0.3 2 2 1.5 5.9e+02 -0.6 0.2 141 178 119 156 102 172 0.73 TIP49 P-loop domain T2SSE PF00437.20 273 pAY701528_00019 - 181 0.0056 15.8 0.0 1 1 2.1e-05 0.0086 15.2 0.0 130 154 5 29 1 70 0.87 Type II/IV secretion system protein AAA_24 PF13479.6 197 pAY701528_00019 - 181 0.0071 16.1 0.1 1 1 2e-05 0.0082 15.9 0.1 4 32 6 39 3 159 0.81 AAA domain ATPase PF06745.13 231 pAY701528_00019 - 181 0.0082 15.5 0.7 1 2 4.3e-05 0.018 14.4 0.1 18 38 3 23 1 39 0.87 KaiC ATPase PF06745.13 231 pAY701528_00019 - 181 0.0082 15.5 0.7 2 2 2.5 1e+03 -1.1 0.1 99 129 128 159 98 175 0.51 KaiC APS_kinase PF01583.20 158 pAY701528_00019 - 181 0.0099 15.8 0.0 1 2 0.00018 0.073 13.0 0.0 1 47 3 47 3 110 0.67 Adenylylsulphate kinase APS_kinase PF01583.20 158 pAY701528_00019 - 181 0.0099 15.8 0.0 2 2 0.86 3.5e+02 1.0 0.0 44 74 118 148 97 158 0.73 Adenylylsulphate kinase AAA_25 PF13481.6 194 pAY701528_00019 - 181 0.013 15.1 0.1 1 2 8.3e-05 0.034 13.7 0.1 32 54 3 25 1 28 0.88 AAA domain AAA_25 PF13481.6 194 pAY701528_00019 - 181 0.013 15.1 0.1 2 2 7.3 3e+03 -2.4 0.0 118 174 56 74 30 85 0.48 AAA domain NTPase_1 PF03266.15 168 pAY701528_00019 - 181 0.014 15.3 1.2 1 2 6.7e-05 0.027 14.4 0.2 2 22 7 27 6 36 0.88 NTPase NTPase_1 PF03266.15 168 pAY701528_00019 - 181 0.014 15.3 1.2 2 2 3.6 1.5e+03 -1.0 0.0 26 82 102 158 96 173 0.59 NTPase DnaB_C PF03796.15 255 pAY701528_00019 - 181 0.017 14.5 0.7 1 2 0.00014 0.055 12.8 0.0 17 47 2 32 1 41 0.84 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pAY701528_00019 - 181 0.017 14.5 0.7 2 2 1.2 4.8e+02 -0.1 0.2 48 116 103 172 96 180 0.46 DnaB-like helicase C terminal domain SRP54 PF00448.22 196 pAY701528_00019 - 181 0.017 14.7 0.0 1 1 9.1e-05 0.037 13.7 0.0 3 40 6 42 4 46 0.81 SRP54-type protein, GTPase domain RuvB_N PF05496.12 159 pAY701528_00019 - 181 0.023 14.5 0.0 1 2 0.00016 0.066 12.9 0.0 36 59 7 30 3 46 0.86 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 pAY701528_00019 - 181 0.023 14.5 0.0 2 2 8.1 3.3e+03 -2.3 0.0 108 127 101 120 98 134 0.59 Holliday junction DNA helicase RuvB P-loop domain AAA_11 PF13086.6 261 pAY701528_00019 - 181 0.024 14.4 1.4 1 1 0.00016 0.066 13.0 1.4 16 42 3 29 1 179 0.78 AAA domain Hydin_ADK PF17213.3 198 pAY701528_00019 - 181 0.025 14.9 0.2 1 2 6e-05 0.025 14.9 0.2 2 22 7 27 6 31 0.93 Hydin Adenylate kinase-like domain Hydin_ADK PF17213.3 198 pAY701528_00019 - 181 0.025 14.9 0.2 2 2 6.2 2.5e+03 -1.5 0.1 82 82 138 138 101 178 0.43 Hydin Adenylate kinase-like domain AAA_7 PF12775.7 181 pAY701528_00019 - 181 0.025 14.1 0.6 1 2 0.00025 0.1 12.1 0.0 31 64 2 35 1 47 0.83 P-loop containing dynein motor region AAA_7 PF12775.7 181 pAY701528_00019 - 181 0.025 14.1 0.6 2 2 1.5 6e+02 -0.2 0.1 56 91 98 133 95 169 0.82 P-loop containing dynein motor region Viral_helicase1 PF01443.18 234 pAY701528_00019 - 181 0.027 14.2 0.0 1 1 0.00011 0.044 13.5 0.0 1 60 7 75 7 88 0.65 Viral (Superfamily 1) RNA helicase ArsA_ATPase PF02374.15 305 pAY701528_00019 - 181 0.035 13.3 0.1 1 2 0.00022 0.088 12.0 0.0 2 44 5 46 4 84 0.80 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 pAY701528_00019 - 181 0.035 13.3 0.1 2 2 2.5 1e+03 -1.4 0.1 161 172 136 147 98 175 0.49 Anion-transporting ATPase NACHT PF05729.12 166 pAY701528_00019 - 181 0.035 14.0 0.0 1 1 0.00014 0.056 13.4 0.0 1 31 5 35 5 73 0.75 NACHT domain Sigma54_activat PF00158.26 168 pAY701528_00019 - 181 0.041 13.6 0.0 1 1 0.00019 0.077 12.7 0.0 25 67 7 56 1 95 0.75 Sigma-54 interaction domain Rad17 PF03215.15 186 pAY701528_00019 - 181 0.043 13.7 0.0 1 2 0.00032 0.13 12.2 0.0 45 69 4 28 1 41 0.87 Rad17 P-loop domain Rad17 PF03215.15 186 pAY701528_00019 - 181 0.043 13.7 0.0 2 2 4.2 1.7e+03 -1.3 0.0 113 146 110 145 97 169 0.63 Rad17 P-loop domain MKT1_N PF12247.8 90 pAY701528_00019 - 181 0.044 14.2 0.0 1 1 0.00024 0.099 13.0 0.0 14 52 39 75 35 148 0.89 Temperature dependent protein affecting M2 dsRNA replication NB-ARC PF00931.22 252 pAY701528_00019 - 181 0.047 12.9 0.0 1 1 0.00021 0.087 12.0 0.0 21 47 5 30 1 45 0.84 NB-ARC domain ATPase_2 PF01637.18 233 pAY701528_00019 - 181 0.059 13.3 0.1 1 2 0.0093 3.8 7.4 0.0 19 54 3 38 1 65 0.80 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pAY701528_00019 - 181 0.059 13.3 0.1 2 2 0.086 35 4.2 0.1 47 83 101 146 91 179 0.49 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 107 pAY701528_00019 - 181 0.067 13.6 0.0 1 1 0.00029 0.12 12.8 0.0 1 35 7 42 7 77 0.71 RNA helicase PG_binding_3 PF09374.10 76 pAY701528_00019 - 181 0.071 13.4 0.1 1 2 0.79 3.2e+02 1.7 0.0 26 63 17 57 11 78 0.69 Predicted Peptidoglycan domain PG_binding_3 PF09374.10 76 pAY701528_00019 - 181 0.071 13.4 0.1 2 2 0.0028 1.1 9.5 0.0 13 39 78 104 69 138 0.73 Predicted Peptidoglycan domain IPT PF01745.16 233 pAY701528_00019 - 181 0.077 12.4 0.2 1 2 0.00061 0.25 10.7 0.1 3 25 6 28 4 41 0.90 Isopentenyl transferase IPT PF01745.16 233 pAY701528_00019 - 181 0.077 12.4 0.2 2 2 2 8.3e+02 -0.8 0.0 193 214 126 147 83 164 0.72 Isopentenyl transferase PhoH PF02562.16 205 pAY701528_00019 - 181 0.086 12.3 0.1 1 1 0.0004 0.16 11.4 0.1 18 43 3 28 1 36 0.81 PhoH-like protein IstB_IS21 PF01695.17 178 pAY701528_00019 - 181 0.088 12.5 0.0 1 1 0.00043 0.18 11.6 0.0 48 70 5 27 1 47 0.84 IstB-like ATP binding protein ATP-synt_ab PF00006.25 213 pAY701528_00019 - 181 0.094 12.4 0.0 1 1 0.00026 0.1 12.2 0.0 13 49 3 99 1 176 0.70 ATP synthase alpha/beta family, nucleotide-binding domain AAA_3 PF07726.11 131 pAY701528_00019 - 181 0.1 12.5 0.1 1 2 0.00079 0.32 10.8 0.0 2 29 7 34 6 43 0.82 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 131 pAY701528_00019 - 181 0.1 12.5 0.1 2 2 5 2e+03 -1.5 0.0 76 91 130 145 119 171 0.70 ATPase family associated with various cellular activities (AAA) Ploopntkinase3 PF18751.1 185 pAY701528_00019 - 181 0.11 12.4 0.6 1 3 0.00094 0.38 10.6 0.0 3 33 4 34 1 49 0.80 P-loop Nucleotide Kinase3 Ploopntkinase3 PF18751.1 185 pAY701528_00019 - 181 0.11 12.4 0.6 2 3 9.5 3.9e+03 -2.4 0.0 101 115 67 84 59 98 0.72 P-loop Nucleotide Kinase3 Ploopntkinase3 PF18751.1 185 pAY701528_00019 - 181 0.11 12.4 0.6 3 3 3.2 1.3e+03 -0.9 0.1 108 144 101 138 90 157 0.70 P-loop Nucleotide Kinase3 APH PF01636.23 240 pAY701528_00020 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pAY701528_00020 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pAY701528_00020 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pAY701528_00020 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pAY701528_00020 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pAY701528_00020 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 pAY701528_00021 - 139 4.2e-51 174.0 0.1 1 1 2.7e-55 4.8e-51 173.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase Adenyl_transf PF04439.12 279 pAY701528_00022 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 pAY701528_00023 - 180 5.6e-20 71.7 0.1 1 1 3.8e-23 7.6e-20 71.3 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 pAY701528_00023 - 180 1.7e-13 50.8 0.1 1 1 1.4e-16 2.7e-13 50.1 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 pAY701528_00023 - 180 2.7e-12 46.7 0.0 1 1 1.9e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 pAY701528_00023 - 180 2e-09 37.8 1.3 1 1 1.2e-12 2.4e-09 37.5 1.3 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 pAY701528_00023 - 180 0.0015 19.2 0.0 1 1 9.5e-07 0.0019 18.9 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 pAY701528_00023 - 180 0.0019 18.3 0.0 1 1 1.9e-06 0.0038 17.3 0.0 8 58 80 130 50 132 0.86 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 pAY701528_00023 - 180 0.011 15.8 0.0 1 1 2.2e-05 0.044 13.9 0.0 21 126 50 154 43 156 0.73 Acetyltransferase (GNAT) domain PanZ PF12568.8 128 pAY701528_00023 - 180 0.031 14.0 0.0 1 1 2.2e-05 0.044 13.5 0.0 29 121 63 154 46 163 0.72 Acetyltransferase (GNAT) domain, PanZ FR47 PF08445.10 86 pAY701528_00023 - 180 0.038 14.0 0.0 1 1 3.2e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein APH PF01636.23 240 pAY701528_00024 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pAY701528_00024 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pAY701528_00024 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pAY701528_00024 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family Y1_Tnp PF01797.16 121 pAY701528_00025 - 157 1.5e-37 128.4 1.5 1 1 1.1e-41 2e-37 128.0 1.5 2 121 13 133 12 133 0.94 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 69 pAY701528_00026 - 412 4.6e-23 80.9 0.3 1 1 8.6e-26 9.6e-23 79.9 0.3 1 69 321 390 321 390 0.98 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 pAY701528_00026 - 412 6.7e-13 48.9 2.3 1 2 2.8 3.1e+03 -1.7 0.8 52 87 37 69 23 95 0.68 Probable transposase OrfB_IS605 PF01385.19 120 pAY701528_00026 - 412 6.7e-13 48.9 2.3 2 2 6e-16 6.7e-13 48.9 2.3 10 118 184 299 169 301 0.83 Probable transposase HTH_OrfB_IS605 PF12323.8 47 pAY701528_00026 - 412 3.3e-09 36.1 2.5 1 1 6.5e-12 7.3e-09 35.0 2.5 1 43 1 44 1 48 0.94 Helix-turn-helix domain DUF4428 PF14471.6 51 pAY701528_00026 - 412 0.012 15.6 0.4 1 1 4e-05 0.045 13.7 0.4 8 33 353 381 351 391 0.82 Domain of unknown function (DUF4428) Prok-RING_1 PF14446.6 54 pAY701528_00026 - 412 0.018 15.0 0.5 1 1 2.9e-05 0.032 14.1 0.5 2 33 346 380 345 384 0.81 Prokaryotic RING finger family 1 Methyltr_RsmF_N PF17125.5 90 pAY701528_00026 - 412 0.051 14.1 2.4 1 2 8.7e-05 0.098 13.2 0.1 7 78 64 135 60 138 0.78 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltr_RsmF_N PF17125.5 90 pAY701528_00026 - 412 0.051 14.1 2.4 2 2 1.6 1.7e+03 -0.5 0.2 11 40 215 246 208 265 0.65 N-terminal domain of 16S rRNA methyltransferase RsmF Rpr2 PF04032.16 90 pAY701528_00026 - 412 0.064 13.5 4.2 1 3 3.8 4.3e+03 -1.9 0.1 13 34 269 290 258 316 0.57 RNAse P Rpr2/Rpp21/SNM1 subunit domain Rpr2 PF04032.16 90 pAY701528_00026 - 412 0.064 13.5 4.2 2 3 0.006 6.7 7.1 0.2 37 54 340 357 326 360 0.87 RNAse P Rpr2/Rpp21/SNM1 subunit domain Rpr2 PF04032.16 90 pAY701528_00026 - 412 0.064 13.5 4.2 3 3 0.0094 11 6.4 0.1 42 67 366 389 357 397 0.79 RNAse P Rpr2/Rpp21/SNM1 subunit domain Zn-ribbon_8 PF09723.10 40 pAY701528_00026 - 412 0.11 12.7 1.0 1 1 0.00026 0.29 11.3 1.0 8 40 351 381 329 381 0.87 Zinc ribbon domain C1_2 PF03107.16 47 pAY701528_00026 - 412 0.13 12.6 1.1 1 1 0.00022 0.25 11.7 1.1 14 43 344 378 329 380 0.79 C1 domain Zn_Tnp_IS1595 PF12760.7 46 pAY701528_00026 - 412 0.14 12.2 1.0 1 1 0.00023 0.26 11.3 1.0 20 45 350 375 345 376 0.90 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 23 pAY701528_00026 - 412 0.2 11.4 2.0 1 2 0.0097 11 5.9 0.1 13 21 348 356 341 357 0.85 zinc-ribbon domain zinc_ribbon_2 PF13240.6 23 pAY701528_00026 - 412 0.2 11.4 2.0 2 2 0.032 35 4.3 0.2 2 8 370 376 369 382 0.88 zinc-ribbon domain YhfH PF14149.6 37 pAY701528_00026 - 412 0.3 11.1 4.1 1 2 0.0094 11 6.1 0.2 13 21 348 356 336 357 0.72 YhfH-like protein YhfH PF14149.6 37 pAY701528_00026 - 412 0.3 11.1 4.1 2 2 0.018 20 5.3 0.4 16 24 370 378 369 383 0.90 YhfH-like protein Rubredoxin_2 PF18073.1 28 pAY701528_00026 - 412 0.53 10.1 1.7 1 2 0.2 2.3e+02 1.6 0.1 3 8 351 356 350 361 0.80 Rubredoxin metal binding domain Rubredoxin_2 PF18073.1 28 pAY701528_00026 - 412 0.53 10.1 1.7 2 2 0.0029 3.2 7.6 0.2 1 11 368 378 368 379 0.88 Rubredoxin metal binding domain A2L_zn_ribbon PF08792.10 33 pAY701528_00026 - 412 1.2 8.9 5.1 1 1 0.0057 6.4 6.6 5.1 4 29 349 375 348 377 0.84 A2L zinc ribbon domain AMIN PF11741.8 97 pAY701528_00026 - 412 1.9 8.7 8.2 1 2 0.0008 0.89 9.7 0.3 14 65 15 65 8 72 0.84 AMIN domain AMIN PF11741.8 97 pAY701528_00026 - 412 1.9 8.7 8.2 2 2 0.23 2.6e+02 1.8 1.5 11 63 156 223 146 256 0.63 AMIN domain eIF-5_eIF-2B PF01873.17 117 pAY701528_00026 - 412 2.6 7.9 7.7 1 2 0.43 4.8e+02 0.6 0.2 47 75 24 53 10 73 0.55 Domain found in IF2B/IF5 eIF-5_eIF-2B PF01873.17 117 pAY701528_00026 - 412 2.6 7.9 7.7 2 2 0.00094 1.1 9.2 1.5 89 116 350 375 328 376 0.86 Domain found in IF2B/IF5 NPA PF16469.5 123 pAY701528_00027 - 91 0.057 14.0 6.1 1 1 3.3e-06 0.06 13.9 6.1 17 103 3 89 1 91 0.87 Nematode polyprotein allergen ABA-1 DUF1272 PF06906.11 57 pAY701528_00028 - 75 0.0094 16.0 4.2 1 1 1.8e-06 0.016 15.3 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) Papo_T_antigen PF02380.15 93 pAY701528_00028 - 75 0.011 15.8 6.4 1 1 1.9e-06 0.017 15.2 6.4 51 73 44 65 28 69 0.86 T-antigen specific domain AAA_31 PF13614.6 177 pAY701528_00029 - 31 7.9e-05 22.7 0.1 1 1 1.3e-08 7.9e-05 22.7 0.1 3 24 2 23 1 30 0.92 AAA domain CbiA PF01656.23 128 pAY701528_00029 - 31 0.0032 17.5 0.0 1 1 5.6e-07 0.0033 17.5 0.0 1 21 3 23 3 26 0.92 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 246 pAY701528_00029 - 31 0.037 13.5 0.1 1 1 6.4e-06 0.038 13.4 0.1 5 25 2 22 1 25 0.91 NUBPL iron-transfer P-loop NTPase Cas_DxTHG PF09455.10 359 pAY701528_00030 - 153 0.045 13.3 3.0 1 2 0.074 3.3e+02 0.6 0.1 81 121 29 74 5 79 0.60 CRISPR-associated (Cas) DxTHG family Cas_DxTHG PF09455.10 359 pAY701528_00030 - 153 0.045 13.3 3.0 2 2 1.7e-05 0.075 12.6 1.7 34 101 80 151 52 153 0.72 CRISPR-associated (Cas) DxTHG family adh_short PF00106.25 195 pAY701528_00030 - 153 0.071 12.6 0.0 1 1 1.9e-05 0.084 12.3 0.0 17 81 57 124 49 151 0.88 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pAY701528_00030 - 153 0.078 13.2 0.0 1 1 2.9e-05 0.13 12.5 0.0 21 78 72 126 58 135 0.81 Mur ligase family, glutamate ligase domain Glycos_transf_2 PF00535.26 170 pAY701528_00030 - 153 0.1 12.4 0.0 1 1 3e-05 0.13 12.0 0.0 2 53 67 118 66 142 0.80 Glycosyl transferase family 2 Eco57I PF07669.11 106 pAY701528_00032 - 556 1.9e-05 25.1 0.2 1 1 6.6e-09 5.9e-05 23.5 0.2 3 103 372 472 370 475 0.78 Eco57I restriction-modification methylase MTS PF05175.14 169 pAY701528_00032 - 556 0.0027 17.3 0.0 1 1 7.7e-07 0.0069 16.0 0.0 31 144 309 427 299 442 0.72 Methyltransferase small domain Acetyltransf_7 PF13508.7 76 pAY714214_00002 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pAY714214_00002 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 pAY714214_00003 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pAY714214_00003 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pAY714214_00004 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pAY714214_00004 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pAY714214_00004 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pAY714214_00004 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pAY714214_00004 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pAY714214_00004 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pAY714214_00004 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pAY714214_00004 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pAY714214_00004 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pAY714214_00004 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pAY714214_00004 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 pAY714214_00005 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pAY714214_00005 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pAY714214_00005 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pAY714214_00005 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pAY714214_00005 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 pAY714214_00007 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pAY714214_00007 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pAY714214_00008 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pAY714214_00008 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 pAY714214_00008 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pAY714214_00008 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pAY714214_00008 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pAY714214_00009 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pAY714214_00009 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) UBA_6 PF18039.1 42 pAY714214_00010 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 pAY714214_00010 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pAY714214_00010 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 pAY714214_00010 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 pAY714214_00011 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pAY714214_00011 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 pAY714214_00011 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pAY714214_00013 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pAY714214_00014 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pAY714214_00015 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pAY714214_00015 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pAY714214_00015 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pAY714214_00015 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pAY714214_00015 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pAY714214_00015 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pAY714214_00015 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pAY714214_00015 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pAY714214_00015 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pAY714214_00015 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pAY714214_00015 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pAY714214_00015 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 pAY714214_00016 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pAY714214_00016 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pAY714214_00016 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pAY714214_00016 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pAY714214_00016 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pAY714214_00016 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pAY714214_00016 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pAY714214_00016 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pAY714214_00016 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pAY714214_00016 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pAY714214_00017 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pAY714214_00017 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pAY714214_00017 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pAY714214_00019 - 87 3.5e-13 49.6 6.7 1 1 4.5e-17 4e-13 49.4 6.7 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pAY714214_00019 - 87 0.17 11.8 4.4 1 1 2.6e-05 0.23 11.3 4.4 78 135 37 87 9 87 0.70 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pAY714214_00020 - 922 4.9e-50 170.5 0.5 1 1 1.9e-53 1.2e-49 169.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pAY714214_00020 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pAY714214_00020 - 922 0.048 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pAY714214_00021 - 188 2e-29 102.0 0.1 1 1 1.9e-33 3.3e-29 101.3 0.1 2 88 24 122 23 122 0.83 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 pAY714214_00022 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pAY714214_00022 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pAY714214_00022 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pAY714214_00022 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pAY714214_00022 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pAY714214_00022 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pAY714214_00022 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pAY714214_00022 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pAY714214_00022 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pAY714214_00022 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pAY714214_00022 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pAY714214_00022 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pAY714214_00022 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pAY714214_00022 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pAY714214_00023 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pAY714214_00024 - 91 0.00046 19.9 6.9 1 2 5.3e-08 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pAY714214_00024 - 91 0.00046 19.9 6.9 2 2 0.014 1.3e+02 2.5 0.2 31 52 57 78 56 80 0.82 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pAY714214_00024 - 91 0.0053 17.3 1.0 1 1 6.9e-07 0.0062 17.1 1.0 21 87 9 81 1 85 0.90 FliG N-terminal domain T4SS PF07996.11 197 pAY714214_00025 - 323 7.9e-29 101.5 13.4 1 1 4e-32 1e-28 101.1 13.4 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pAY714214_00025 - 323 0.0081 16.3 0.6 1 2 0.99 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pAY714214_00025 - 323 0.0081 16.3 0.6 2 2 1.2e-05 0.03 14.5 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pAY714214_00025 - 323 0.014 16.1 5.0 1 2 0.046 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pAY714214_00025 - 323 0.014 16.1 5.0 2 2 5.3e-06 0.014 16.1 5.0 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 pAY714214_00025 - 323 0.043 14.5 0.8 1 2 2.2 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pAY714214_00025 - 323 0.043 14.5 0.8 2 2 1.7e-05 0.043 14.5 0.8 32 84 209 270 202 296 0.83 von Willebrand factor type A domain KNOX2 PF03791.13 48 pAY714214_00025 - 323 0.07 12.6 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pAY714214_00025 - 323 0.07 12.6 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain THOC7 PF05615.13 132 pAY714214_00025 - 323 1.2 9.4 11.3 1 2 0.00061 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pAY714214_00025 - 323 1.2 9.4 11.3 2 2 0.17 4.4e+02 1.1 6.3 16 71 231 294 202 315 0.50 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pAY714214_00025 - 323 3.5 7.1 7.2 1 2 0.19 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pAY714214_00025 - 323 3.5 7.1 7.2 2 2 0.00046 1.2 8.6 3.3 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein TrbL PF04610.14 215 pAY714214_00026 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pAY714214_00026 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pAY714214_00026 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pAY714214_00026 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pAY714214_00026 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pAY714214_00027 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pAY714214_00027 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pAY714214_00028 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pAY714214_00028 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pAY714214_00029 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pAY714214_00029 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pAY714214_00029 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pAY714214_00030 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pAY714214_00030 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pAY714214_00031 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pAY714214_00031 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pAY714214_00031 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pAY714214_00031 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pAY714214_00031 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pAY714214_00031 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pAY714214_00031 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pAY714214_00031 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pAY714214_00031 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pAY714214_00031 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pAY714214_00031 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pAY714214_00031 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pAY714214_00031 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pAY714214_00031 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pAY714214_00031 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pAY714214_00031 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pAY714214_00031 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pAY714214_00031 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pAY714214_00031 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pAY714214_00031 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pAY714214_00031 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pAY714214_00031 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pAY714214_00031 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pAY714214_00031 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pAY714214_00031 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pAY714214_00031 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pAY714214_00031 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pAY714214_00031 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pAY714214_00031 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pAY714214_00031 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pAY714214_00031 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pAY714214_00031 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pAY714214_00032 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pAY714214_00032 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pAY714214_00032 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pAY714214_00032 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pAY714214_00032 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pAY714214_00033 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pAY714214_00033 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pAY714214_00033 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pAY714214_00033 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pAY714214_00033 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pAY714214_00034 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pAY714214_00035 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pAY714214_00035 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pAY714214_00035 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pAY714214_00035 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pAY714214_00035 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pAY714214_00035 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pAY714214_00037 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pAY714214_00037 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pAY714214_00038 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pAY714214_00038 - 730 5.6e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pAY714214_00038 - 730 5.6e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pAY714214_00038 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pAY714214_00038 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pAY714214_00038 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pAY714214_00038 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pAY714214_00038 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pAY714214_00038 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pAY714214_00038 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pAY714214_00038 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pAY714214_00038 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pAY714214_00038 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pAY714214_00038 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pAY714214_00038 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pAY714214_00038 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pAY714214_00038 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pAY714214_00038 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pAY714214_00038 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pAY714214_00038 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pAY714214_00038 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pAY714214_00038 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pAY714214_00038 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pAY714214_00038 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pAY714214_00038 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pAY714214_00038 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pAY714214_00038 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pAY714214_00038 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pAY714214_00038 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pAY714214_00038 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pAY714214_00038 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pAY714214_00038 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pAY714214_00038 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pAY714214_00038 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pAY714214_00039 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pAY714214_00039 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pAY714214_00041 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pAY714214_00041 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pAY714214_00041 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pAY714214_00041 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pAY714214_00041 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pAY714214_00041 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pAY714214_00041 - 639 0.00029 21.1 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pAY714214_00041 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pAY714214_00041 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pAY714214_00041 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 pAY714214_00041 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 pAY714214_00042 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pAY714214_00042 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 pAY714214_00044 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pAY714214_00044 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pAY714214_00044 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain CtsR_C PF17727.1 72 pAY714214_00045 - 116 0.039 14.1 0.2 1 2 0.00024 4.3 7.5 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pAY714214_00045 - 116 0.039 14.1 0.2 2 2 0.0022 40 4.4 0.0 28 48 74 94 71 105 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pAY714214_00046 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pAY714214_00046 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain DUF1516 PF07457.11 108 pAY714214_00047 - 91 0.0042 17.3 0.4 1 1 8.2e-07 0.0049 17.0 0.4 39 87 7 53 1 69 0.77 Protein of unknown function (DUF1516) LysE PF01810.18 193 pAY714214_00047 - 91 0.0049 16.4 0.1 1 1 9.5e-07 0.0057 16.1 0.1 36 93 5 62 3 80 0.88 LysE type translocator DUF2873 PF11395.8 43 pAY714214_00047 - 91 1 9.3 0.1 1 3 0.00017 1 9.3 0.1 1 20 1 20 1 23 0.92 Protein of unknown function (DUF2873) DUF2873 PF11395.8 43 pAY714214_00047 - 91 1 9.3 0.1 2 3 0.16 9.8e+02 -0.3 0.4 14 27 31 41 27 48 0.59 Protein of unknown function (DUF2873) DUF2873 PF11395.8 43 pAY714214_00047 - 91 1 9.3 0.1 3 3 1.7 1e+04 -3.5 7.8 8 19 76 87 70 89 0.84 Protein of unknown function (DUF2873) S1_2 PF13509.6 61 pAY714214_00048 - 89 0.093 12.8 0.5 1 2 4.7e-05 0.85 9.7 0.1 5 37 10 44 8 54 0.86 S1 domain S1_2 PF13509.6 61 pAY714214_00048 - 89 0.093 12.8 0.5 2 2 0.0067 1.2e+02 2.8 0.1 11 34 43 68 39 79 0.78 S1 domain DUF4044 PF13253.6 33 pAY714214_00049 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pAY714214_00049 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pAY714214_00049 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pAY714214_00049 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pAY714214_00049 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pAY714214_00049 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pAY714214_00050 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pAY714214_00050 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pAY714214_00051 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pAY714214_00051 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pAY714214_00051 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pAY714214_00051 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pAY714214_00051 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pAY714214_00051 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pAY714214_00052 - 88 5.4e-07 29.9 1.0 1 1 3.3e-11 5.9e-07 29.8 1.0 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG PDDEXK_9 PF08011.11 105 pAY714214_00053 - 159 0.017 15.0 0.2 1 1 1.8e-06 0.032 14.1 0.2 11 77 38 106 34 128 0.82 PD-(D/E)XK nuclease superfamily DUF5445 PF17520.2 52 pAY714214_00054 - 77 1 9.2 12.2 1 1 7.3e-05 1.3 8.9 11.2 7 36 43 71 41 74 0.88 Family of unknown function (DUF5445) DUF2362 PF10154.9 501 pAY730722_00001 - 369 0.00027 20.0 30.9 1 2 3 1.8e+04 -8.8 16.2 105 234 2 133 1 139 0.48 Uncharacterized conserved protein (DUF2362) DUF2362 PF10154.9 501 pAY730722_00001 - 369 0.00027 20.0 30.9 2 2 4.5e-08 0.00027 20.0 30.9 22 221 139 361 136 368 0.77 Uncharacterized conserved protein (DUF2362) ORC4_C PF14629.6 219 pAY730722_00001 - 369 0.0033 16.8 1.8 1 3 0.58 3.5e+03 -2.9 0.7 23 49 13 42 2 67 0.57 Origin recognition complex (ORC) subunit 4 C-terminus ORC4_C PF14629.6 219 pAY730722_00001 - 369 0.0033 16.8 1.8 2 3 0.48 2.9e+03 -2.6 0.0 44 130 83 102 69 113 0.62 Origin recognition complex (ORC) subunit 4 C-terminus ORC4_C PF14629.6 219 pAY730722_00001 - 369 0.0033 16.8 1.8 3 3 5.5e-07 0.0033 16.8 1.8 22 62 187 238 160 276 0.81 Origin recognition complex (ORC) subunit 4 C-terminus ApoO PF09769.9 130 pAY730722_00001 - 369 1.4 8.9 14.2 1 4 1.3 8e+03 -3.3 0.0 108 123 75 90 71 92 0.73 Apolipoprotein O ApoO PF09769.9 130 pAY730722_00001 - 369 1.4 8.9 14.2 2 4 0.0016 9.7 6.2 2.4 11 63 137 217 103 227 0.81 Apolipoprotein O ApoO PF09769.9 130 pAY730722_00001 - 369 1.4 8.9 14.2 3 4 0.0018 11 6.0 0.2 9 65 250 308 242 313 0.87 Apolipoprotein O ApoO PF09769.9 130 pAY730722_00001 - 369 1.4 8.9 14.2 4 4 0.039 2.3e+02 1.7 0.2 13 52 314 353 310 361 0.63 Apolipoprotein O DUF2362 PF10154.9 501 pAY730723_00001 - 369 0.00027 20.0 30.9 1 2 3 1.8e+04 -8.8 16.2 105 234 2 133 1 139 0.48 Uncharacterized conserved protein (DUF2362) DUF2362 PF10154.9 501 pAY730723_00001 - 369 0.00027 20.0 30.9 2 2 4.5e-08 0.00027 20.0 30.9 22 221 139 361 136 368 0.77 Uncharacterized conserved protein (DUF2362) ORC4_C PF14629.6 219 pAY730723_00001 - 369 0.0033 16.8 1.8 1 3 0.58 3.5e+03 -2.9 0.7 23 49 13 42 2 67 0.57 Origin recognition complex (ORC) subunit 4 C-terminus ORC4_C PF14629.6 219 pAY730723_00001 - 369 0.0033 16.8 1.8 2 3 0.48 2.9e+03 -2.6 0.0 44 130 83 102 69 113 0.62 Origin recognition complex (ORC) subunit 4 C-terminus ORC4_C PF14629.6 219 pAY730723_00001 - 369 0.0033 16.8 1.8 3 3 5.5e-07 0.0033 16.8 1.8 22 62 187 238 160 276 0.81 Origin recognition complex (ORC) subunit 4 C-terminus ApoO PF09769.9 130 pAY730723_00001 - 369 1.4 8.9 14.2 1 4 1.3 8e+03 -3.3 0.0 108 123 75 90 71 92 0.73 Apolipoprotein O ApoO PF09769.9 130 pAY730723_00001 - 369 1.4 8.9 14.2 2 4 0.0016 9.7 6.2 2.4 11 63 137 217 103 227 0.81 Apolipoprotein O ApoO PF09769.9 130 pAY730723_00001 - 369 1.4 8.9 14.2 3 4 0.0018 11 6.0 0.2 9 65 250 308 242 313 0.87 Apolipoprotein O ApoO PF09769.9 130 pAY730723_00001 - 369 1.4 8.9 14.2 4 4 0.039 2.3e+02 1.7 0.2 13 52 314 353 310 361 0.63 Apolipoprotein O LysE PF01810.18 193 pCM007863_00001 - 72 5.6e-05 22.7 0.0 1 1 2.2e-08 6.7e-05 22.4 0.0 36 94 5 63 3 70 0.90 LysE type translocator DUF1516 PF07457.11 108 pCM007863_00001 - 72 0.002 18.3 0.3 1 1 7.1e-07 0.0021 18.2 0.3 39 83 7 49 1 61 0.82 Protein of unknown function (DUF1516) TerC PF03741.16 181 pCM007863_00001 - 72 0.041 13.6 0.3 1 1 1.6e-05 0.047 13.4 0.3 39 90 8 60 3 70 0.73 Integral membrane protein TerC family DUF5305 PF17231.2 219 pCM007863_00001 - 72 0.077 12.4 0.6 1 2 0.24 7.2e+02 -0.6 0.0 116 136 6 26 2 29 0.75 Family of unknown function (DUF5305) DUF5305 PF17231.2 219 pCM007863_00001 - 72 0.077 12.4 0.6 2 2 3.4e-05 0.1 12.0 0.2 114 157 25 69 19 72 0.76 Family of unknown function (DUF5305) Saf_2TM PF18303.1 152 pCM007863_00001 - 72 0.11 12.1 0.8 1 2 0.3 9.1e+02 -0.6 0.0 65 82 5 22 2 29 0.49 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCM007863_00001 - 72 0.11 12.1 0.8 2 2 4.5e-05 0.13 11.8 0.3 61 99 22 62 15 67 0.72 SAVED-fused 2TM effector domain PetL PF05115.14 31 pCM007863_00001 - 72 3.4 7.7 9.7 1 2 0.011 33 4.6 1.8 10 29 6 25 4 25 0.84 Cytochrome B6-F complex subunit VI (PetL) PetL PF05115.14 31 pCM007863_00001 - 72 3.4 7.7 9.7 2 2 0.0013 4 7.5 1.2 8 25 28 44 27 50 0.83 Cytochrome B6-F complex subunit VI (PetL) Flp1_like PF16982.5 49 pCM007863_00002 - 132 0.015 14.7 2.9 1 3 1.7e-06 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCM007863_00002 - 132 0.015 14.7 2.9 2 3 1.2 1e+04 -4.0 0.3 16 22 67 73 66 76 0.49 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCM007863_00002 - 132 0.015 14.7 2.9 3 3 0.91 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain BRI3BP PF14965.6 180 pCM007863_00002 - 132 0.26 10.8 3.9 1 1 3.1e-05 0.28 10.7 3.5 59 106 51 101 32 120 0.81 Negative regulator of p53/TP53 YopX PF09643.10 131 pCM007863_00004 - 148 1.9e-14 53.8 7.2 1 1 5.2e-17 4.7e-13 49.3 7.2 28 131 30 142 7 142 0.59 YopX protein RE_ApaLI PF09499.10 189 pCM007863_00004 - 148 0.0081 15.9 0.6 1 1 9.3e-07 0.0083 15.9 0.6 48 117 58 129 21 148 0.79 ApaLI-like restriction endonuclease DUF2583 PF10762.9 88 pCM007863_00006 - 117 0.67 10.4 3.8 1 2 0.00097 17 5.9 0.8 15 58 3 46 1 53 0.84 Protein of unknown function (DUF2583) DUF2583 PF10762.9 88 pCM007863_00006 - 117 0.67 10.4 3.8 2 2 0.00084 15 6.1 0.7 14 58 48 98 43 102 0.75 Protein of unknown function (DUF2583) Topoisom_bac PF01131.20 413 pCM007863_00009 - 730 3.9e-97 325.9 7.9 1 1 4.8e-100 5.4e-97 325.4 7.9 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCM007863_00009 - 730 1.9e-12 47.3 0.4 1 2 9.2e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCM007863_00009 - 730 1.9e-12 47.3 0.4 2 2 3.9 4.4e+03 -2.0 0.0 38 56 537 556 489 567 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 pCM007863_00009 - 730 1.6e-08 34.1 15.1 1 2 3.7e-09 4.1e-06 26.5 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCM007863_00009 - 730 1.6e-08 34.1 15.1 2 2 8.7e-05 0.098 12.5 2.4 3 27 683 710 681 719 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCM007863_00009 - 730 1e-05 25.7 2.3 1 3 8.3 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCM007863_00009 - 730 1e-05 25.7 2.3 2 3 0.00037 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCM007863_00009 - 730 1e-05 25.7 2.3 3 3 3.8e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCM007863_00009 - 730 0.012 15.7 1.3 1 2 0.0077 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCM007863_00009 - 730 0.012 15.7 1.3 2 2 0.0045 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCM007863_00009 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCM007863_00009 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 pCM007863_00009 - 730 0.055 14.3 2.8 1 2 0.007 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCM007863_00009 - 730 0.055 14.3 2.8 2 2 0.021 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCM007863_00009 - 730 0.087 12.3 2.7 1 2 0.003 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCM007863_00009 - 730 0.087 12.3 2.7 2 2 0.02 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pCM007863_00009 - 730 0.089 12.7 0.0 1 1 0.00027 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pCM007863_00009 - 730 0.089 13.1 4.5 1 2 0.00079 0.88 9.9 3.7 5 64 627 689 623 696 0.71 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCM007863_00009 - 730 0.089 13.1 4.5 2 2 0.0023 2.6 8.4 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pCM007863_00009 - 730 0.44 10.8 3.3 1 3 1.7 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCM007863_00009 - 730 0.44 10.8 3.3 2 3 5 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCM007863_00009 - 730 0.44 10.8 3.3 3 3 0.00076 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCM007863_00009 - 730 0.55 9.9 3.0 1 2 0.03 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCM007863_00009 - 730 0.55 9.9 3.0 2 2 0.011 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCM007863_00009 - 730 0.63 10.0 3.8 1 2 0.0041 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCM007863_00009 - 730 0.63 10.0 3.8 2 2 0.13 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCM007863_00009 - 730 0.73 9.9 3.8 1 2 0.1 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCM007863_00009 - 730 0.73 9.9 3.8 2 2 0.0039 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCM007863_00009 - 730 7 6.5 8.0 1 2 0.046 51 3.7 2.5 15 31 629 645 627 660 0.79 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCM007863_00009 - 730 7 6.5 8.0 2 2 0.016 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCM007863_00009 - 730 8.4 6.4 6.5 1 2 0.01 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCM007863_00009 - 730 8.4 6.4 6.5 2 2 0.088 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 pCM007863_00010 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCM007863_00010 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 pCM007863_00012 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCM007863_00012 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCM007863_00012 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCM007863_00012 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCM007863_00012 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCM007863_00012 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 pCM007863_00013 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 pCM007863_00014 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pCM007863_00014 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pCM007863_00014 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCM007863_00014 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCM007863_00014 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 pCM007863_00015 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCM007863_00015 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCM007863_00015 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCM007863_00015 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCM007863_00015 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 pCM007863_00016 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCM007863_00016 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCM007863_00016 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCM007863_00016 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCM007863_00016 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCM007863_00016 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCM007863_00016 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCM007863_00016 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCM007863_00016 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCM007863_00016 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCM007863_00016 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCM007863_00016 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCM007863_00016 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCM007863_00016 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCM007863_00016 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCM007863_00016 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCM007863_00016 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCM007863_00016 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCM007863_00016 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCM007863_00016 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCM007863_00016 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCM007863_00016 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCM007863_00016 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCM007863_00016 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCM007863_00016 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCM007863_00016 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCM007863_00016 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCM007863_00016 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCM007863_00016 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCM007863_00016 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCM007863_00016 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCM007863_00016 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 pCM007863_00017 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCM007863_00017 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 pCM007863_00018 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCM007863_00018 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCM007863_00018 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 pCM007863_00019 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCM007863_00019 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 pCM007863_00020 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCM007863_00020 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 pCM007863_00021 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCM007863_00021 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCM007863_00021 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCM007863_00021 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCM007863_00021 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 pCM007863_00022 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pCM007863_00022 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCM007863_00022 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCM007863_00022 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCM007863_00022 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pCM007863_00022 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pCM007863_00022 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pCM007863_00022 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCM007863_00022 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 pCM007863_00022 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pCM007863_00022 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pCM007863_00022 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pCM007863_00022 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 pCM007863_00022 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pCM007863_00022 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain IF2_N PF04760.15 54 pCM007863_00023 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCM007863_00023 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCM007863_00023 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCM007863_00023 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCM007863_00023 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCM007863_00023 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCM007863_00023 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 pCM007863_00024 - 141 1.5e-25 89.2 0.1 1 1 1e-29 1.8e-25 88.9 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3895 PF13034.6 76 pCM007863_00025 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 pCM007863_00025 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) Phage_pRha PF09669.10 88 pCM007863_00026 - 185 6.7e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCM007863_00026 - 185 0.0015 18.6 0.0 1 1 8.6e-07 0.0031 17.6 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pCM007863_00026 - 185 0.026 14.1 0.3 1 2 0.05 1.8e+02 1.6 0.1 80 118 33 71 5 80 0.74 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pCM007863_00026 - 185 0.026 14.1 0.3 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pCM007863_00026 - 185 0.081 12.9 0.1 1 1 6.1e-05 0.22 11.5 0.0 77 131 80 130 69 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pCM007863_00026 - 185 0.83 9.7 7.1 1 3 0.019 69 3.6 0.1 40 53 12 25 3 29 0.83 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCM007863_00026 - 185 0.83 9.7 7.1 2 3 0.0022 7.9 6.6 0.9 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCM007863_00026 - 185 0.83 9.7 7.1 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 CagE_TrbE_VirB PF03135.14 206 pCM007863_00027 - 922 4.1e-51 174.0 0.4 1 1 2e-54 9.1e-51 172.9 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCM007863_00027 - 922 7.7e-21 74.1 0.9 1 1 3.1e-24 1.4e-20 73.3 0.9 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 pCM007863_00027 - 922 2.9e-07 29.8 0.9 1 1 1.5e-10 6.6e-07 28.6 0.9 23 321 547 846 542 860 0.73 AAA-like domain DUF87 PF01935.17 227 pCM007863_00027 - 922 0.013 15.6 3.4 1 5 0.67 3e+03 -1.9 0.2 134 201 188 252 133 281 0.47 Helicase HerA, central domain DUF87 PF01935.17 227 pCM007863_00027 - 922 0.013 15.6 3.4 2 5 0.9 4e+03 -2.4 0.0 87 124 263 298 243 301 0.77 Helicase HerA, central domain DUF87 PF01935.17 227 pCM007863_00027 - 922 0.013 15.6 3.4 3 5 0.00034 1.5 8.8 0.0 26 49 548 571 539 598 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 pCM007863_00027 - 922 0.013 15.6 3.4 4 5 0.0067 30 4.6 0.1 100 163 638 700 610 731 0.79 Helicase HerA, central domain DUF87 PF01935.17 227 pCM007863_00027 - 922 0.013 15.6 3.4 5 5 0.36 1.6e+03 -1.1 0.0 43 108 751 811 747 910 0.65 Helicase HerA, central domain TrbC PF04956.13 99 pCM007863_00028 - 87 6.2e-13 48.8 6.8 1 1 7.4e-17 6.6e-13 48.7 6.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCM007863_00028 - 87 0.61 9.9 6.3 1 1 0.00015 1.3 8.9 6.2 108 135 60 87 10 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pCM007863_00030 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCM007863_00030 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 Resolvase PF00239.21 146 pCM007863_00031 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCM007863_00031 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 pCM007863_00031 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pCM007863_00031 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCM007863_00031 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCM007863_00031 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCM007863_00031 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain AAA_25 PF13481.6 194 pCM007863_00032 - 597 5.4e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pCM007863_00032 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCM007863_00032 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCM007863_00032 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCM007863_00032 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pCM007863_00032 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 pCM007863_00032 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pCM007863_00032 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCM007863_00032 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pCM007863_00032 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pCM007863_00032 - 597 0.37 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCM007863_00032 - 597 0.37 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCM007863_00032 - 597 0.37 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) HicA_toxin PF07927.12 58 pCM007863_00033 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pCM007863_00034 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 pCM007863_00036 - 92 0.0052 16.8 2.6 1 1 7.7e-07 0.0069 16.4 2.6 34 88 27 83 25 86 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2633 PF11119.8 57 pCM007863_00036 - 92 0.56 10.1 4.1 1 2 0.44 4e+03 -2.2 0.0 8 15 7 14 5 18 0.76 Protein of unknown function (DUF2633) DUF2633 PF11119.8 57 pCM007863_00036 - 92 0.56 10.1 4.1 2 2 0.00023 2 8.4 4.2 11 33 34 57 27 60 0.83 Protein of unknown function (DUF2633) UBA_6 PF18039.1 42 pCM007863_00037 - 35 0.027 14.4 0.0 1 1 4.8e-06 0.028 14.3 0.0 4 28 2 26 1 31 0.92 UBA-like domain DUF3606 PF12244.8 54 pCM007863_00037 - 35 0.045 13.7 0.0 1 1 7.6e-06 0.045 13.7 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pCM007863_00037 - 35 0.068 13.6 0.0 1 1 1.1e-05 0.068 13.6 0.0 1 22 1 22 1 33 0.95 Cell division protein ZapB DUF4223 PF13978.6 54 pCM007863_00038 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pCM007863_00038 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) Toprim_3 PF13362.6 95 pCM007863_00039 - 408 2.1e-08 34.4 0.0 1 1 6.4e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Toprim_4 PF13662.6 89 pCM007863_00039 - 408 0.14 12.7 0.1 1 1 5.1e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pCM007863_00039 - 408 0.19 12.3 4.2 1 2 0.023 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCM007863_00039 - 408 0.19 12.3 4.2 2 2 0.00023 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF2004 PF09406.10 106 pCM007863_00040 - 219 0.12 12.7 3.0 1 2 3.5e-05 0.62 10.4 1.0 9 78 46 117 40 128 0.90 Protein of unknown function (DUF2004) DUF2004 PF09406.10 106 pCM007863_00040 - 219 0.12 12.7 3.0 2 2 0.014 2.4e+02 2.1 0.0 36 78 164 209 131 213 0.86 Protein of unknown function (DUF2004) Sds3 PF08598.11 218 pCM007863_00042 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pCM007863_00042 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCM007863_00042 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pCM007863_00042 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pCM007863_00042 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 pCM007863_00043 - 183 0.00011 22.1 5.7 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCM007863_00043 - 183 0.00011 22.1 5.7 2 3 0.49 1.8e+03 -0.9 0.0 21 36 77 92 71 97 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCM007863_00043 - 183 0.00011 22.1 5.7 3 3 1.9e-05 0.067 13.2 0.7 15 62 107 156 95 161 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCM007863_00043 - 183 0.058 13.5 1.9 1 1 2.4e-05 0.087 12.9 1.4 56 131 20 103 9 116 0.67 Stage III sporulation protein AB (spore_III_AB) DndE PF08870.11 112 pCM007863_00043 - 183 0.31 11.3 5.7 1 2 0.075 2.7e+02 1.9 0.1 2 22 9 29 8 37 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCM007863_00043 - 183 0.31 11.3 5.7 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 pCM007863_00043 - 183 0.53 10.6 5.9 1 2 0.0007 2.5 8.5 2.0 14 90 6 82 3 98 0.74 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCM007863_00043 - 183 0.53 10.6 5.9 2 2 0.017 60 4.0 0.1 45 88 102 143 96 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 pCM007863_00043 - 183 2 8.5 7.9 1 3 0.29 1e+03 -0.2 0.1 40 55 12 27 4 56 0.73 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCM007863_00043 - 183 2 8.5 7.9 2 3 0.061 2.2e+02 2.0 0.5 10 46 55 91 50 97 0.85 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCM007863_00043 - 183 2 8.5 7.9 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 Relaxase PF03432.14 242 pCM007863_00044 - 462 4.3e-09 36.3 8.2 1 2 2.4e-13 4.3e-09 36.3 8.2 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCM007863_00044 - 462 4.3e-09 36.3 8.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain DUF2768 PF10966.8 58 pCM007863_00045 - 235 0.053 14.0 0.6 1 1 5.9e-06 0.11 13.0 0.6 23 52 204 233 202 234 0.91 Protein of unknown function (DUF2768) SNF2_N PF00176.23 350 pCM007863_00046 - 1932 3e-16 59.1 1.8 1 3 1.4e-19 5.1e-16 58.3 0.1 58 245 1018 1272 957 1313 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCM007863_00046 - 1932 3e-16 59.1 1.8 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCM007863_00046 - 1932 3e-16 59.1 1.8 3 3 0.85 3.1e+03 -3.4 0.0 171 200 1877 1907 1856 1920 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pCM007863_00046 - 1932 7.5e-08 32.6 8.9 1 2 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCM007863_00046 - 1932 7.5e-08 32.6 8.9 2 2 0.35 1.2e+03 -0.7 5.5 29 122 1793 1909 1747 1930 0.68 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCM007863_00046 - 1932 9.6e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCM007863_00046 - 1932 9.6e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCM007863_00046 - 1932 8.1e-06 25.7 2.5 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 pCM007863_00046 - 1932 8.1e-06 25.7 2.5 2 2 0.068 2.4e+02 1.4 0.1 119 151 1882 1916 1830 1929 0.69 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCM007863_00046 - 1932 2.6e-05 24.7 0.7 1 2 6.5e-08 0.00023 21.6 0.2 3 103 371 471 369 474 0.81 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCM007863_00046 - 1932 2.6e-05 24.7 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 pCM007863_00047 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 pCM007863_00047 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal AAA_31 PF13614.6 177 pCM007863_00048 - 186 5.3e-05 23.2 0.6 1 2 2.2e-07 0.001 19.1 0.1 3 26 2 25 1 34 0.91 AAA domain AAA_31 PF13614.6 177 pCM007863_00048 - 186 5.3e-05 23.2 0.6 2 2 0.022 98 2.8 0.0 116 156 52 92 24 105 0.69 AAA domain CbiA PF01656.23 128 pCM007863_00048 - 186 0.0012 18.9 0.5 1 1 1.8e-06 0.0079 16.3 0.5 1 25 3 27 3 185 0.69 CobQ/CobB/MinD/ParA nucleotide binding domain Mur_ligase_C PF02875.21 91 pCM007863_00048 - 186 0.062 13.6 0.0 1 1 2.4e-05 0.11 12.8 0.0 21 78 84 138 70 147 0.84 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCM007863_00048 - 186 0.18 11.3 0.0 1 1 5.8e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pCM007863_00049 - 88 0.00028 21.0 1.6 1 1 5.9e-08 0.00035 20.7 1.6 51 74 44 66 28 83 0.87 T-antigen specific domain CEBP_ZZ PF16366.5 61 pCM007863_00049 - 88 0.022 15.0 2.6 1 1 5e-06 0.03 14.6 2.6 13 53 28 66 25 74 0.79 Cytoplasmic polyadenylation element-binding protein ZZ domain DUF1272 PF06906.11 57 pCM007863_00049 - 88 0.049 13.7 3.8 1 1 1.2e-05 0.074 13.1 3.8 8 39 29 58 26 65 0.90 Protein of unknown function (DUF1272) Lip_prot_lig_C PF10437.9 85 pCM007865_00001 - 126 0.048 13.6 3.7 1 2 0.013 2.3e+02 1.9 0.0 56 83 26 51 12 53 0.77 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCM007865_00001 - 126 0.048 13.6 3.7 2 2 6.8e-06 0.12 12.4 3.0 2 83 39 123 38 124 0.85 Bacterial lipoate protein ligase C-terminus EptA_B_N PF08019.12 152 pCM007865_00003 - 135 0.12 12.3 10.8 1 2 8.8e-06 0.053 13.4 1.6 98 144 6 52 2 59 0.86 Phosphoethanolamine transferase EptA/EptB EptA_B_N PF08019.12 152 pCM007865_00003 - 135 0.12 12.3 10.8 2 2 0.0055 33 4.3 1.6 70 115 75 120 70 134 0.65 Phosphoethanolamine transferase EptA/EptB FeoB_associated PF12669.7 44 pCM007865_00003 - 135 1.9 9.0 0.0 1 3 0.13 7.6e+02 0.6 1.7 9 17 9 18 7 28 0.50 FeoB-associated Cys-rich membrane protein FeoB_associated PF12669.7 44 pCM007865_00003 - 135 1.9 9.0 0.0 2 3 0.39 2.3e+03 -0.9 0.1 12 23 57 68 54 73 0.66 FeoB-associated Cys-rich membrane protein FeoB_associated PF12669.7 44 pCM007865_00003 - 135 1.9 9.0 0.0 3 3 0.00031 1.9 9.0 0.0 2 26 106 132 105 134 0.81 FeoB-associated Cys-rich membrane protein DUF2070 PF09843.9 564 pCM007865_00003 - 135 7.9 4.6 18.3 1 1 0.0016 9.6 4.4 18.3 73 163 11 117 2 128 0.61 Predicted membrane protein (DUF2070) Topoisom_bac PF01131.20 413 pCM007865_00006 - 730 5.8e-97 325.3 7.7 1 1 7.6e-100 8e-97 324.8 7.7 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCM007865_00006 - 730 1.8e-12 47.4 0.4 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCM007865_00006 - 730 1.8e-12 47.4 0.4 2 2 4.1 4.4e+03 -2.0 0.0 38 56 537 556 489 567 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 pCM007865_00006 - 730 1.4e-08 34.4 14.8 1 2 3.9e-09 4.1e-06 26.5 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCM007865_00006 - 730 1.4e-08 34.4 14.8 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCM007865_00006 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCM007865_00006 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCM007865_00006 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCM007865_00006 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCM007865_00006 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCM007865_00006 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCM007865_00006 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 pCM007865_00006 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCM007865_00006 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCM007865_00006 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCM007865_00006 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pCM007865_00006 - 730 0.088 12.7 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pCM007865_00006 - 730 0.089 13.1 4.5 1 2 0.00084 0.88 9.9 3.7 5 64 627 689 623 696 0.71 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCM007865_00006 - 730 0.089 13.1 4.5 2 2 0.0025 2.6 8.4 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain FLYWCH PF04500.16 62 pCM007865_00006 - 730 0.14 12.3 3.1 1 2 0.19 2e+02 2.2 0.0 25 42 644 660 636 670 0.79 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pCM007865_00006 - 730 0.14 12.3 3.1 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain HTH_34 PF13601.6 80 pCM007865_00006 - 730 0.47 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCM007865_00006 - 730 0.47 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCM007865_00006 - 730 0.47 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCM007865_00006 - 730 0.55 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCM007865_00006 - 730 0.55 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCM007865_00006 - 730 0.63 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCM007865_00006 - 730 0.63 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCM007865_00006 - 730 0.73 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCM007865_00006 - 730 0.73 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCM007865_00006 - 730 7 6.5 8.0 1 2 0.049 51 3.7 2.5 15 31 629 645 627 660 0.79 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCM007865_00006 - 730 7 6.5 8.0 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCM007865_00006 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCM007865_00006 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 pCM007865_00007 - 206 0.055 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCM007865_00007 - 206 0.055 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 pCM007865_00008 - 265 0.039 13.8 0.5 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCM007865_00008 - 265 0.039 13.8 0.5 2 2 6.5e-06 0.039 13.8 0.5 96 155 83 147 69 149 0.85 PRELI-like family DUF2304 PF10066.9 106 pCM007865_00008 - 265 0.1 12.8 0.9 1 1 4e-05 0.24 11.6 0.9 42 101 167 226 165 231 0.94 Uncharacterized conserved protein (DUF2304) Rsd_AlgQ PF04353.13 150 pCM007865_00008 - 265 1.3 8.9 6.1 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCM007865_00008 - 265 1.3 8.9 6.1 2 3 7.4e-05 0.44 10.5 1.9 42 108 120 185 89 189 0.81 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCM007865_00008 - 265 1.3 8.9 6.1 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 pCM007865_00009 - 254 2.6e-35 121.7 1.4 1 1 2e-39 3.6e-35 121.2 1.4 1 154 24 192 24 194 0.86 TrbM Cag12 PF13117.6 97 pCM007865_00010 - 145 5.5e-17 62.1 0.4 1 1 1.2e-20 6.9e-17 61.8 0.4 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pCM007865_00010 - 145 0.068 13.0 0.2 1 1 3.3e-05 0.19 11.5 0.2 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCM007865_00010 - 145 3.9 7.4 6.0 1 2 0.00075 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCM007865_00010 - 145 3.9 7.4 6.0 2 2 0.16 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 pCM007865_00011 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCM007865_00011 - 603 9.9e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCM007865_00011 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCM007865_00011 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCM007865_00011 - 603 0.046 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 pCM007865_00012 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCM007865_00012 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCM007865_00012 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCM007865_00012 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCM007865_00012 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCM007865_00012 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCM007865_00012 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCM007865_00012 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCM007865_00012 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCM007865_00012 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCM007865_00012 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCM007865_00012 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCM007865_00012 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCM007865_00012 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCM007865_00012 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCM007865_00012 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCM007865_00012 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCM007865_00012 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCM007865_00012 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCM007865_00012 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCM007865_00012 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCM007865_00012 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCM007865_00012 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCM007865_00012 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCM007865_00012 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCM007865_00012 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCM007865_00012 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCM007865_00012 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCM007865_00012 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCM007865_00012 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCM007865_00012 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCM007865_00012 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 pCM007865_00013 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCM007865_00013 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 pCM007865_00014 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCM007865_00014 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCM007865_00014 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 pCM007865_00015 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCM007865_00015 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 pCM007865_00016 - 72 0.035 13.0 0.0 1 1 3.9e-06 0.035 13.0 0.0 3 24 20 40 18 68 0.82 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCM007865_00016 - 72 1.5 8.6 5.2 1 1 0.00029 2.6 7.9 5.2 8 20 22 34 22 35 0.94 Photosystem II reaction centre T protein TrbL PF04610.14 215 pCM007865_00017 - 332 8.7e-31 107.4 31.2 1 2 4.8e-35 8.7e-31 107.4 31.2 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCM007865_00017 - 332 8.7e-31 107.4 31.2 2 2 0.27 4.8e+03 -2.9 0.1 60 71 288 299 266 328 0.51 TrbL/VirB6 plasmid conjugal transfer protein T4SS PF07996.11 197 pCM007865_00018 - 323 2.2e-28 100.0 14.0 1 1 1.1e-31 2.9e-28 99.6 14.0 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pCM007865_00018 - 323 0.0037 17.4 0.4 1 2 0.84 2.1e+03 -1.1 0.0 30 54 134 158 122 180 0.76 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCM007865_00018 - 323 0.0037 17.4 0.4 2 2 5.9e-06 0.015 15.4 0.1 18 82 195 259 186 263 0.92 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCM007865_00018 - 323 0.0089 16.7 5.2 1 2 0.048 1.2e+02 3.3 0.5 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCM007865_00018 - 323 0.0089 16.7 5.2 2 2 3.5e-06 0.0089 16.7 5.2 47 128 219 318 203 322 0.76 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pCM007865_00018 - 323 0.064 12.8 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pCM007865_00018 - 323 0.064 12.8 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pCM007865_00018 - 323 0.07 13.8 0.9 1 2 2 5e+03 -1.8 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCM007865_00018 - 323 0.07 13.8 0.9 2 2 2.7e-05 0.07 13.8 0.9 32 84 209 270 203 295 0.83 von Willebrand factor type A domain DHR10 PF18595.1 117 pCM007865_00018 - 323 5.7 7.0 14.8 1 2 0.1 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pCM007865_00018 - 323 5.7 7.0 14.8 2 2 0.00026 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain THOC7 PF05615.13 132 pCM007865_00018 - 323 5.8 7.2 12.9 1 2 0.00067 1.7 8.9 0.3 57 107 101 151 97 175 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pCM007865_00018 - 323 5.8 7.2 12.9 2 2 0.28 7.2e+02 0.4 6.6 15 71 230 294 215 315 0.59 Tho complex subunit 7 IF2_N PF04760.15 54 pCM007865_00019 - 91 6.5e-05 22.7 5.8 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCM007865_00019 - 91 6.5e-05 22.7 5.8 2 2 0.0075 34 4.4 0.1 31 53 57 79 56 80 0.87 Translation initiation factor IF-2, N-terminal region HTH_16 PF12645.7 65 pCM007865_00019 - 91 0.013 15.5 1.9 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCM007865_00019 - 91 0.013 15.5 1.9 2 2 2.8e-05 0.13 12.4 0.3 15 54 44 82 40 85 0.87 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCM007865_00019 - 91 0.029 15.1 0.5 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCM007865_00019 - 91 0.029 15.1 0.5 2 2 0.014 63 4.4 0.0 29 51 69 91 64 91 0.83 Rv0623-like transcription factor FliG_N PF14842.6 104 pCM007865_00019 - 91 0.039 14.5 1.0 1 1 1e-05 0.046 14.3 1.0 21 86 9 80 1 85 0.89 FliG N-terminal domain SSB PF00436.25 104 pCM007865_00020 - 140 1.4e-25 89.3 0.1 1 1 1e-29 1.8e-25 89.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3895 PF13034.6 76 pCM007865_00021 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 pCM007865_00021 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) Phage_pRha PF09669.10 88 pCM007865_00022 - 185 6.9e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCM007865_00022 - 185 0.0016 18.5 0.0 1 1 9.1e-07 0.0033 17.5 0.0 23 90 27 94 23 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pCM007865_00022 - 185 0.031 13.9 0.1 1 2 0.063 2.3e+02 1.3 0.0 80 118 33 71 5 80 0.78 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pCM007865_00022 - 185 0.031 13.9 0.1 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pCM007865_00022 - 185 0.09 12.8 0.0 1 1 5.5e-05 0.2 11.7 0.0 77 131 80 130 62 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pCM007865_00022 - 185 0.56 10.3 5.4 1 3 0.048 1.7e+02 2.3 0.0 42 53 14 25 3 28 0.78 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCM007865_00022 - 185 0.56 10.3 5.4 2 3 0.0021 7.7 6.6 0.8 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCM007865_00022 - 185 0.56 10.3 5.4 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 CagE_TrbE_VirB PF03135.14 206 pCM007865_00023 - 922 3.6e-49 167.7 0.3 1 1 2e-52 9e-49 166.4 0.3 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCM007865_00023 - 922 7e-21 74.3 1.2 1 1 2.8e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 pCM007865_00023 - 922 3.8e-07 29.4 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 pCM007865_00023 - 922 0.024 14.7 4.5 1 5 0.52 2.3e+03 -1.6 0.1 117 202 161 253 129 284 0.48 Helicase HerA, central domain DUF87 PF01935.17 227 pCM007865_00023 - 922 0.024 14.7 4.5 2 5 0.89 4e+03 -2.3 0.0 87 124 263 298 243 301 0.77 Helicase HerA, central domain DUF87 PF01935.17 227 pCM007865_00023 - 922 0.024 14.7 4.5 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 pCM007865_00023 - 922 0.024 14.7 4.5 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 pCM007865_00023 - 922 0.024 14.7 4.5 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain TrbC PF04956.13 99 pCM007865_00024 - 87 1.2e-15 57.5 7.6 1 1 1.5e-19 1.4e-15 57.3 7.6 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCM007865_00024 - 87 0.047 13.5 4.0 1 1 6.1e-06 0.054 13.3 3.6 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pCM007865_00026 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCM007865_00026 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pCM007865_00026 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase Resolvase PF00239.21 146 pCM007865_00027 - 204 3.6e-33 114.7 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCM007865_00027 - 204 0.027 14.2 1.2 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCM007865_00027 - 204 0.027 14.2 1.2 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pCM007865_00027 - 204 0.027 14.2 1.2 3 3 0.0087 39 4.1 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCM007865_00027 - 204 0.047 13.7 5.4 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCM007865_00027 - 204 0.047 13.7 5.4 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCM007865_00027 - 204 0.047 13.7 5.4 3 3 0.0092 41 4.3 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCM007865_00027 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCM007865_00027 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCM007865_00027 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat AAA_25 PF13481.6 194 pCM007865_00028 - 597 5.3e-15 55.5 0.0 1 1 5e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pCM007865_00028 - 597 0.00032 20.1 0.0 1 2 8.7e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCM007865_00028 - 597 0.00032 20.1 0.0 2 2 0.012 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCM007865_00028 - 597 0.0021 17.8 0.0 1 2 6.6e-06 0.015 15.1 0.0 46 87 32 73 22 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCM007865_00028 - 597 0.0021 17.8 0.0 2 2 0.62 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pCM007865_00028 - 597 0.0072 15.7 0.0 1 2 2.6e-05 0.058 12.7 0.0 16 70 30 83 23 120 0.90 KaiC ATPase PF06745.13 231 pCM007865_00028 - 597 0.0072 15.7 0.0 2 2 0.49 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC AAA PF00004.29 132 pCM007865_00028 - 597 0.013 15.9 0.2 1 2 0.00015 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCM007865_00028 - 597 0.013 15.9 0.2 2 2 0.19 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pCM007865_00028 - 597 0.2 11.7 2.0 1 1 0.00043 0.95 9.5 2.0 1 29 35 63 35 529 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pCM007865_00028 - 597 0.35 10.8 3.5 1 3 0.0023 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCM007865_00028 - 597 0.35 10.8 3.5 2 3 0.2 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCM007865_00028 - 597 0.35 10.8 3.5 3 3 0.38 8.5e+02 -0.0 0.1 9 23 521 535 516 541 0.75 Apolipoprotein C-I (ApoC-1) VASP_tetra PF08776.11 37 pCM007865_00028 - 597 3.8 7.2 6.1 1 2 0.006 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pCM007865_00028 - 597 3.8 7.2 6.1 2 2 0.038 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain HicA_toxin PF07927.12 58 pCM007865_00029 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pCM007865_00030 - 72 4.2e-08 33.3 0.0 1 1 2.4e-12 4.4e-08 33.3 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 pCM007865_00032 - 85 0.0043 17.1 1.7 1 1 6e-07 0.0054 16.8 1.7 34 88 20 76 18 80 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2633 PF11119.8 57 pCM007865_00032 - 85 0.93 9.4 4.2 1 1 0.00019 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) DUF4223 PF13978.6 54 pCM007865_00033 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pCM007865_00033 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pCM007865_00033 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 pCM007865_00034 - 409 1.6e-08 34.8 0.2 1 2 0.7 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pCM007865_00034 - 409 1.6e-08 34.8 0.2 2 2 4.8e-12 4.3e-08 33.4 0.0 3 94 271 376 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pCM007865_00034 - 409 0.017 15.4 0.1 1 2 0.012 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pCM007865_00034 - 409 0.017 15.4 0.1 2 2 0.00015 1.3 9.3 0.0 15 83 283 359 277 369 0.80 Retrotransposon gag protein Sds3 PF08598.11 218 pCM007865_00036 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pCM007865_00036 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCM007865_00036 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pCM007865_00036 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pCM007865_00036 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 pCM007865_00037 - 183 0.00012 22.0 7.0 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCM007865_00037 - 183 0.00012 22.0 7.0 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCM007865_00037 - 183 0.00012 22.0 7.0 3 3 1.2e-05 0.043 13.8 1.2 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCM007865_00037 - 183 0.063 13.4 2.6 1 1 2e-05 0.071 13.2 1.5 57 131 21 103 9 126 0.66 Stage III sporulation protein AB (spore_III_AB) NLRC4_HD PF17889.1 107 pCM007865_00037 - 183 0.47 10.8 6.1 1 2 0.00044 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCM007865_00037 - 183 0.47 10.8 6.1 2 2 0.021 76 3.7 0.2 45 88 102 143 92 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 pCM007865_00037 - 183 0.53 10.4 9.0 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCM007865_00037 - 183 0.53 10.4 9.0 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCM007865_00037 - 183 0.53 10.4 9.0 3 3 0.00042 1.5 8.9 0.4 8 32 103 127 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pCM007865_00037 - 183 0.57 10.5 7.1 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCM007865_00037 - 183 0.57 10.5 7.1 2 2 0.00017 0.61 10.4 1.8 1 50 71 120 71 161 0.80 DNA sulphur modification protein DndE Relaxase PF03432.14 242 pCM007865_00038 - 462 7.8e-10 38.8 7.7 1 2 8.7e-14 7.8e-10 38.8 7.7 48 227 119 295 70 311 0.65 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCM007865_00038 - 462 7.8e-10 38.8 7.7 2 2 0.037 3.3e+02 0.7 5.7 137 183 348 394 316 426 0.72 Relaxase/Mobilisation nuclease domain YqaJ PF09588.10 148 pCM007865_00038 - 462 0.03 14.5 3.9 1 3 2.7e-05 0.24 11.6 0.4 92 136 210 255 33 259 0.79 YqaJ-like viral recombinase domain YqaJ PF09588.10 148 pCM007865_00038 - 462 0.03 14.5 3.9 2 3 0.011 96 3.1 0.0 29 63 265 300 257 306 0.71 YqaJ-like viral recombinase domain YqaJ PF09588.10 148 pCM007865_00038 - 462 0.03 14.5 3.9 3 3 0.81 7.3e+03 -3.0 0.0 54 138 373 388 346 402 0.56 YqaJ-like viral recombinase domain HTH_19 PF12844.7 65 pCM007865_00039 - 314 6.3e-06 26.1 0.3 1 3 0.0016 2.1 8.5 0.0 11 32 9 30 2 46 0.89 Helix-turn-helix domain HTH_19 PF12844.7 65 pCM007865_00039 - 314 6.3e-06 26.1 0.3 2 3 6.9 8.9e+03 -3.2 0.0 43 52 90 99 77 105 0.56 Helix-turn-helix domain HTH_19 PF12844.7 65 pCM007865_00039 - 314 6.3e-06 26.1 0.3 3 3 1.9e-05 0.024 14.6 0.0 27 64 116 152 107 153 0.92 Helix-turn-helix domain HTH_3 PF01381.22 55 pCM007865_00039 - 314 7.6e-06 25.9 0.0 1 2 4.9e-08 6.2e-05 23.0 0.0 2 29 3 30 2 30 0.93 Helix-turn-helix HTH_3 PF01381.22 55 pCM007865_00039 - 314 7.6e-06 25.9 0.0 2 2 0.73 9.4e+02 -0.0 0.0 26 55 118 147 110 147 0.85 Helix-turn-helix Phage_CI_repr PF07022.13 65 pCM007865_00039 - 314 0.00035 20.6 0.0 1 2 4.5e-05 0.057 13.5 0.0 11 49 10 47 2 50 0.77 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCM007865_00039 - 314 0.00035 20.6 0.0 2 2 0.028 36 4.5 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 pCM007865_00039 - 314 0.0024 17.4 0.1 1 2 1.1e-05 0.015 14.9 0.1 17 35 10 28 9 29 0.93 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCM007865_00039 - 314 0.0024 17.4 0.1 2 2 0.77 9.9e+02 -0.6 0.0 26 38 98 110 95 112 0.85 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 65 pCM007865_00039 - 314 0.0043 16.9 0.1 1 2 1.4e-05 0.017 14.9 0.0 4 36 5 37 2 49 0.75 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 pCM007865_00039 - 314 0.0043 16.9 0.1 2 2 2.5 3.2e+03 -1.9 0.1 38 47 290 299 289 300 0.87 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_17 PF12728.7 51 pCM007865_00039 - 314 0.028 14.6 0.0 1 2 0.13 1.7e+02 2.5 0.0 5 16 3 14 2 16 0.90 Helix-turn-helix domain HTH_17 PF12728.7 51 pCM007865_00039 - 314 0.028 14.6 0.0 2 2 0.00031 0.4 10.9 0.0 5 27 14 36 11 42 0.85 Helix-turn-helix domain HTH_28 PF13518.6 52 pCM007865_00039 - 314 0.033 14.3 0.0 1 1 6.2e-05 0.079 13.1 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain HTH_23 PF13384.6 50 pCM007865_00039 - 314 0.046 13.5 0.0 1 1 8.4e-05 0.11 12.4 0.0 16 37 7 30 1 35 0.85 Homeodomain-like domain HTH_26 PF13443.6 63 pCM007865_00039 - 314 0.048 14.1 0.1 1 1 8.6e-05 0.11 12.9 0.1 3 30 3 30 1 38 0.88 Cro/C1-type HTH DNA-binding domain HTH_Mga PF08280.11 60 pCM007865_00039 - 314 0.049 13.7 2.0 1 3 0.0013 1.7 8.7 0.1 21 39 11 29 4 30 0.91 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCM007865_00039 - 314 0.049 13.7 2.0 2 3 0.065 83 3.3 0.0 25 59 41 75 32 76 0.80 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCM007865_00039 - 314 0.049 13.7 2.0 3 3 9 1.2e+04 -3.5 0.0 46 50 94 98 86 105 0.47 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.6 52 pCM007865_00039 - 314 0.063 12.7 0.0 1 1 9.3e-05 0.12 11.8 0.0 26 47 10 30 4 33 0.90 Helix-turn-helix domain of transposase family ISL3 HTH_31 PF13560.6 64 pCM007865_00039 - 314 0.075 13.4 0.0 1 1 0.00011 0.14 12.5 0.0 12 34 8 30 2 41 0.88 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 pCM007865_00039 - 314 0.11 12.2 0.0 1 1 0.00022 0.28 10.9 0.0 25 46 9 30 5 30 0.93 Sigma-70, region 4 Crp PF00325.20 32 pCM007865_00039 - 314 0.17 11.6 0.1 1 2 0.00033 0.43 10.3 0.0 1 19 9 27 9 28 0.86 Bacterial regulatory proteins, crp family Crp PF00325.20 32 pCM007865_00039 - 314 0.17 11.6 0.1 2 2 3.2 4.1e+03 -2.5 0.0 18 24 105 111 104 112 0.83 Bacterial regulatory proteins, crp family SNF2_N PF00176.23 350 pCM007865_00040 - 1137 2.3e-16 59.4 3.1 1 3 8e-20 2.9e-16 59.2 0.3 56 245 222 478 140 493 0.72 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCM007865_00040 - 1137 2.3e-16 59.4 3.1 2 3 0.37 1.3e+03 -2.2 0.0 245 283 674 717 667 738 0.71 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCM007865_00040 - 1137 2.3e-16 59.4 3.1 3 3 0.4 1.4e+03 -2.3 0.0 170 198 1082 1111 1053 1130 0.70 SNF2 family N-terminal domain ResIII PF04851.15 171 pCM007865_00040 - 1137 3.2e-08 33.8 8.8 1 3 9e-12 3.2e-08 33.8 8.8 2 148 205 417 204 448 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCM007865_00040 - 1137 3.2e-08 33.8 8.8 2 3 0.99 3.6e+03 -2.2 0.2 92 135 930 931 868 990 0.52 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCM007865_00040 - 1137 3.2e-08 33.8 8.8 3 3 0.97 3.5e+03 -2.2 7.1 56 151 1032 1109 930 1132 0.60 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCM007865_00040 - 1137 6.8e-07 29.6 1.6 1 3 0.082 2.9e+02 1.8 0.0 45 73 282 310 231 315 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCM007865_00040 - 1137 6.8e-07 29.6 1.6 2 3 6.8e-09 2.4e-05 24.6 0.0 40 111 716 789 670 789 0.79 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCM007865_00040 - 1137 6.8e-07 29.6 1.6 3 3 3.3 1.2e+04 -3.3 0.1 33 66 1059 1092 1040 1096 0.56 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCM007865_00040 - 1137 9.8e-07 28.7 1.9 1 2 1.5e-07 0.00054 19.8 0.4 2 108 209 314 208 413 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 pCM007865_00040 - 1137 9.8e-07 28.7 1.9 2 2 0.036 1.3e+02 2.2 0.1 119 153 1088 1124 1025 1135 0.69 DEAD/DEAH box helicase BST2 PF16716.5 91 pCM007865_00040 - 1137 4.3 8.0 7.3 1 2 0.0023 8.1 7.1 2.7 48 87 333 372 322 376 0.89 Bone marrow stromal antigen 2 BST2 PF16716.5 91 pCM007865_00040 - 1137 4.3 8.0 7.3 2 2 0.27 9.8e+02 0.4 0.1 61 80 1051 1070 1037 1080 0.77 Bone marrow stromal antigen 2 Eco57I PF07669.11 106 pCM007865_00041 - 674 1.2e-05 25.7 0.3 1 1 5.6e-09 5e-05 23.8 0.3 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase MTS PF05175.14 169 pCM007865_00041 - 674 0.004 16.7 0.0 1 1 1.1e-06 0.0098 15.5 0.0 31 140 308 421 298 441 0.72 Methyltransferase small domain RHH_7 PF16777.5 74 pCM007865_00042 - 88 8.5e-07 29.3 0.8 1 1 5.2e-11 9.4e-07 29.1 0.8 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 pCM007865_00043 - 186 7.8e-05 22.7 0.5 1 2 2.4e-07 0.0011 19.0 0.1 3 26 2 25 1 31 0.91 AAA domain AAA_31 PF13614.6 177 pCM007865_00043 - 186 7.8e-05 22.7 0.5 2 2 0.04 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pCM007865_00043 - 186 0.00097 19.2 0.8 1 1 1.7e-06 0.0077 16.3 0.8 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCM007865_00043 - 186 0.014 14.8 0.0 1 1 4.3e-06 0.019 14.4 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase ParA PF10609.9 246 pCM007865_00043 - 186 0.17 11.3 0.0 1 1 5.8e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pCM007865_00044 - 88 0.02 15.0 7.2 1 1 8.3e-06 0.03 14.5 7.2 51 74 44 66 25 83 0.85 T-antigen specific domain DUF1272 PF06906.11 57 pCM007865_00044 - 88 0.059 13.5 6.2 1 1 2.6e-05 0.095 12.8 6.2 8 39 29 58 25 65 0.88 Protein of unknown function (DUF1272) CEBP_ZZ PF16366.5 61 pCM007865_00044 - 88 0.14 12.4 6.2 1 1 5.4e-05 0.19 12.0 6.2 13 53 28 66 25 74 0.78 Cytoplasmic polyadenylation element-binding protein ZZ domain LIM PF00412.22 58 pCM007865_00044 - 88 0.23 11.7 8.9 1 1 0.00011 0.4 10.9 8.9 26 57 26 58 25 59 0.86 LIM domain DUF5595 PF18077.1 73 pCM007865_00044 - 88 0.9 9.7 5.1 1 2 1.4 5.1e+03 -2.4 0.1 46 59 5 18 3 22 0.62 Domain of unknown function (DUF5595) DUF5595 PF18077.1 73 pCM007865_00044 - 88 0.9 9.7 5.1 2 2 5.2e-05 0.19 11.9 1.3 4 29 38 63 37 87 0.77 Domain of unknown function (DUF5595) LysE PF01810.18 193 pCM007865_00045 - 81 5.1e-06 26.1 0.0 1 1 1.9e-09 5.8e-06 25.9 0.0 37 94 6 65 3 78 0.88 LysE type translocator DUF1516 PF07457.11 108 pCM007865_00045 - 81 0.00027 21.1 1.1 1 1 1e-07 0.00031 20.9 1.1 37 84 5 50 1 64 0.81 Protein of unknown function (DUF1516) Ac76 PF05814.11 83 pCM007865_00045 - 81 0.0043 17.0 2.2 1 1 1.7e-06 0.0049 16.8 2.2 3 70 7 70 1 78 0.88 Orf76 (Ac76) Saf_2TM PF18303.1 152 pCM007865_00045 - 81 0.24 11.0 3.5 1 2 0.084 2.5e+02 1.2 0.4 72 90 5 23 2 27 0.48 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCM007865_00045 - 81 0.24 11.0 3.5 2 2 3.9e-05 0.12 12.0 0.7 60 99 21 59 15 65 0.78 SAVED-fused 2TM effector domain DUF2873 PF11395.8 43 pCM007865_00045 - 81 3.7 7.5 6.8 1 2 0.00026 0.78 9.6 0.6 1 20 1 20 1 25 0.92 Protein of unknown function (DUF2873) DUF2873 PF11395.8 43 pCM007865_00045 - 81 3.7 7.5 6.8 2 2 0.1 3e+02 1.4 1.1 9 24 26 41 21 48 0.74 Protein of unknown function (DUF2873) LPAM_1 PF08139.12 18 pCM007865_00045 - 81 7.1 7.3 5.9 1 2 0.00035 1.1 9.9 0.6 1 16 1 16 1 16 0.97 Prokaryotic membrane lipoprotein lipid attachment site LPAM_1 PF08139.12 18 pCM007865_00045 - 81 7.1 7.3 5.9 2 2 0.99 3e+03 -0.9 0.5 6 12 33 39 30 40 0.60 Prokaryotic membrane lipoprotein lipid attachment site Flp1_like PF16982.5 49 pCM007865_00046 - 132 0.044 13.2 3.1 1 3 4.9e-06 0.044 13.2 3.1 17 43 17 43 16 45 0.89 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCM007865_00046 - 132 0.044 13.2 3.1 2 3 1.2 1e+04 -4.0 0.3 16 22 67 73 66 76 0.49 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCM007865_00046 - 132 0.044 13.2 3.1 3 3 1.2 1.1e+04 -4.1 1.5 18 29 92 103 89 107 0.58 Putative Flagellin, Flp1-like, domain BRI3BP PF14965.6 180 pCM007865_00046 - 132 0.053 13.0 1.6 1 1 6.6e-06 0.06 12.9 1.6 59 106 51 101 9 120 0.82 Negative regulator of p53/TP53 MAF_flag10 PF01973.18 171 pCM007884_00001 - 430 1.3e-43 148.6 1.0 1 1 4.5e-47 2.7e-43 147.6 1.0 11 170 3 167 1 168 0.92 Protein of unknown function DUF115 KASH_CCD PF14662.6 191 pCM007884_00001 - 430 0.0075 16.1 0.5 1 1 6.2e-06 0.037 13.9 0.5 12 81 270 339 267 347 0.91 Coiled-coil region of CCDC155 or KASH Fib_alpha PF08702.10 143 pCM007884_00001 - 430 0.072 13.3 4.3 1 2 0.075 4.5e+02 1.0 0.0 84 132 212 232 174 236 0.66 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCM007884_00001 - 430 0.072 13.3 4.3 2 2 5.4e-05 0.33 11.2 2.8 26 120 271 364 269 376 0.88 Fibrinogen alpha/beta chain family MAF_flag10 PF01973.18 171 pCM007884_00002 - 626 1.5e-42 145.2 1.3 1 2 0.72 2.6e+03 -2.0 0.2 83 110 122 148 92 186 0.63 Protein of unknown function DUF115 MAF_flag10 PF01973.18 171 pCM007884_00002 - 626 1.5e-42 145.2 1.3 2 2 8e-46 2.9e-42 144.3 0.1 1 170 209 384 209 385 0.91 Protein of unknown function DUF115 PspA_IM30 PF04012.12 221 pCM007884_00002 - 626 0.054 13.1 2.0 1 1 2.3e-05 0.084 12.4 2.0 82 138 486 543 467 551 0.86 PspA/IM30 family FliE PF02049.18 89 pCM007884_00002 - 626 0.086 13.0 0.1 1 1 4.5e-05 0.16 12.1 0.1 24 84 490 550 472 555 0.86 Flagellar hook-basal body complex protein FliE Sec2p PF06428.11 92 pCM007884_00002 - 626 0.26 11.3 7.2 1 1 0.00023 0.83 9.7 7.2 42 87 488 533 484 538 0.89 GDP/GTP exchange factor Sec2p eIF-4B PF06273.11 502 pCM007884_00002 - 626 1.3 8.0 4.0 1 1 0.00053 1.9 7.5 4.0 368 427 479 538 469 548 0.87 Plant specific eukaryotic initiation factor 4B Mur_ligase_M PF08245.12 192 pCM007885_00002 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 pCM007885_00002 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 pCM007885_00002 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain Abhydrolase_1 PF00561.20 257 pCM007885_00003 - 239 5.1e-09 36.2 0.0 1 2 1.3e-08 3.3e-05 23.7 0.0 3 95 28 112 26 120 0.87 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 257 pCM007885_00003 - 239 5.1e-09 36.2 0.0 2 2 0.00011 0.27 10.8 0.0 207 254 180 226 119 228 0.78 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 220 pCM007885_00003 - 239 6.4e-07 30.2 0.0 1 1 9.3e-10 2.4e-06 28.3 0.0 1 97 28 121 28 234 0.65 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 239 pCM007885_00003 - 239 2.5e-05 23.7 0.0 1 1 1.5e-08 3.9e-05 23.0 0.0 7 116 28 126 25 164 0.74 Serine aminopeptidase, S33 FSH1 PF03959.13 212 pCM007885_00003 - 239 0.0031 17.2 0.1 1 2 0.016 42 3.7 0.0 5 26 26 47 23 61 0.81 Serine hydrolase (FSH1) FSH1 PF03959.13 212 pCM007885_00003 - 239 0.0031 17.2 0.1 2 2 0.0001 0.26 10.9 0.0 151 201 176 223 85 225 0.74 Serine hydrolase (FSH1) Lipase_3 PF01764.25 142 pCM007885_00003 - 239 0.018 14.9 0.0 1 2 2e-05 0.051 13.5 0.0 44 83 57 108 17 113 0.74 Lipase (class 3) Lipase_3 PF01764.25 142 pCM007885_00003 - 239 0.018 14.9 0.0 2 2 1 2.7e+03 -1.9 0.0 46 71 167 192 141 194 0.65 Lipase (class 3) Abhydrolase_4 PF08386.10 103 pCM007885_00003 - 239 0.053 13.6 0.0 1 1 3.2e-05 0.083 13.0 0.0 32 65 182 215 169 238 0.78 TAP-like protein Rota_VP2 PF05087.12 884 pCM007885_00003 - 239 0.056 11.6 0.0 1 1 2.7e-05 0.069 11.3 0.0 724 781 52 109 43 136 0.81 Rotavirus VP2 protein PhdYeFM_antitox PF02604.19 75 pCM007885_00004 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system Dala_Dala_lig_C PF07478.13 204 pCM007885_00005 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 pCM007885_00005 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 pCM007885_00005 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 pCM007885_00005 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 pCM007885_00005 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 pCM007885_00005 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 pCM007885_00005 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 pCM007885_00005 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 pCM007885_00005 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain HHH_5 PF14520.6 57 pCM007885_00006 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 pCM007885_00006 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 pCM007885_00006 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 pCM007885_00006 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 pCM007885_00006 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 pCM007885_00006 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 pCM007885_00006 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 pCM007885_00006 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 pCM007885_00006 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 pCM007885_00006 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 pCM007885_00006 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 pCM007885_00006 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 pCM007885_00006 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCM007885_00006 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 pCM007885_00006 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 pCM007885_00006 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 pCM007885_00006 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 pCM007885_00006 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 pCM007885_00006 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 pCM007885_00006 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 pCM007885_00006 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 pCM007885_00006 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda FapA PF03961.13 454 pCM007885_00007 - 619 3.5e-30 105.0 37.0 1 1 1.2e-33 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 pCM007885_00007 - 619 0.027 13.8 8.1 1 1 1.4e-05 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein Viral_P18 PF04521.13 122 pCM007885_00007 - 619 0.15 11.8 2.3 1 3 0.35 1.6e+03 -1.1 0.0 84 105 175 196 144 255 0.79 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 pCM007885_00007 - 619 0.15 11.8 2.3 2 3 0.0048 21 4.9 0.0 83 122 426 465 412 465 0.83 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 pCM007885_00007 - 619 0.15 11.8 2.3 3 3 0.0091 41 4.0 0.4 71 97 502 528 493 542 0.83 ssRNA positive strand viral 18kD cysteine rich protein APG6_N PF17675.1 133 pCM007885_00007 - 619 0.29 11.7 8.6 1 1 0.00031 1.4 9.5 8.6 30 123 436 526 426 546 0.84 Apg6 coiled-coil region MurJ PF03023.14 452 pCM007885_00008 - 483 1e-91 307.8 60.1 1 1 1.9e-95 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ Bunya_G2 PF03563.13 285 pCM007885_00008 - 483 1.5 8.0 7.4 1 1 0.00035 3.1 7.0 7.4 186 221 443 478 434 483 0.91 Bunyavirus glycoprotein G2 tRNA-synt_1e PF01406.19 301 pCM007885_00009 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 pCM007885_00009 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 pCM007885_00009 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 pCM007885_00009 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 pCM007885_00009 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 pCM007885_00009 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 pCM007885_00009 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 pCM007885_00009 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 pCM007885_00009 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 pCM007885_00009 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 pCM007885_00009 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 pCM007885_00009 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) ABC_membrane PF00664.23 274 pCM007885_00010 - 580 4.4e-48 164.3 8.4 1 1 3.6e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 pCM007885_00010 - 580 4.9e-31 108.1 0.1 1 1 5.5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 pCM007885_00010 - 580 6e-10 38.9 5.9 1 1 8.5e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 pCM007885_00010 - 580 0.00081 19.3 0.2 1 2 4.6 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 pCM007885_00010 - 580 0.00081 19.3 0.2 2 2 1.2e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 pCM007885_00010 - 580 0.0025 18.1 0.4 1 1 1.7e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 pCM007885_00010 - 580 0.0056 16.9 0.2 1 1 2.8e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 pCM007885_00010 - 580 0.0098 15.6 0.1 1 1 2.5e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 pCM007885_00010 - 580 0.024 15.0 0.3 1 3 1 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 pCM007885_00010 - 580 0.024 15.0 0.3 2 3 1.5e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 pCM007885_00010 - 580 0.024 15.0 0.3 3 3 0.91 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 pCM007885_00010 - 580 0.035 14.5 0.0 1 1 5.7e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 pCM007885_00010 - 580 0.094 12.5 0.7 1 2 4.6 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pCM007885_00010 - 580 0.094 12.5 0.7 2 2 0.00012 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 114 pCM007885_00010 - 580 0.11 12.6 0.9 1 1 0.00033 0.53 10.4 0.9 2 42 369 417 368 550 0.69 50S ribosome-binding GTPase DHO_dh PF01180.21 295 pCM007885_00011 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 pCM007885_00011 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 pCM007885_00011 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 pCM007885_00011 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 pCM007885_00011 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family Peptidase_M16_C PF05193.21 183 pCM007885_00012 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 pCM007885_00012 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 pCM007885_00012 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 pCM007885_00012 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 pCM007885_00012 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 pCM007885_00012 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHDPS PF00701.22 289 pCM007885_00013 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 pCM007885_00013 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 pCM007885_00013 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 adh_short_C2 PF13561.6 234 pCM007885_00014 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 pCM007885_00014 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 pCM007885_00014 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 pCM007885_00014 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 pCM007885_00014 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif DUF1129 PF06570.11 206 pCM007885_00015 - 101 0.24 10.9 5.2 1 1 3.7e-05 0.67 9.4 3.4 80 129 1 68 1 74 0.83 Protein of unknown function (DUF1129) Lactamase_B PF00753.27 197 pCM007885_00016 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 pCM007885_00016 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain NAD_synthase PF02540.17 242 pCM007885_00017 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 pCM007885_00017 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 pCM007885_00017 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 pCM007885_00017 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 pCM007885_00017 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 pCM007885_00017 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 pCM007885_00017 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 pCM007885_00017 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 pCM007885_00017 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family LpxK PF02606.14 327 pCM007885_00018 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 pCM007885_00018 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 pCM007885_00018 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCM007885_00018 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) PALP PF00291.25 294 pCM007885_00019 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 pCM007885_00019 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 pCM007885_00019 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 pCM007885_00019 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 pCM007885_00019 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 pCM007885_00019 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain CTP_transf_3 PF02348.19 221 pCM007885_00020 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 pCM007885_00020 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 pCM007885_00020 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 pCM007885_00020 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 pCM007885_00020 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain Mur_ligase_M PF08245.12 192 pCM007886_00002 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 pCM007886_00002 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 pCM007886_00002 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain Abhydrolase_1 PF00561.20 257 pCM007886_00003 - 239 5.1e-09 36.2 0.0 1 2 1.3e-08 3.3e-05 23.7 0.0 3 95 28 112 26 120 0.87 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 257 pCM007886_00003 - 239 5.1e-09 36.2 0.0 2 2 0.00011 0.27 10.8 0.0 207 254 180 226 119 228 0.78 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 220 pCM007886_00003 - 239 6.4e-07 30.2 0.0 1 1 9.3e-10 2.4e-06 28.3 0.0 1 97 28 121 28 234 0.65 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 239 pCM007886_00003 - 239 2.5e-05 23.7 0.0 1 1 1.5e-08 3.9e-05 23.0 0.0 7 116 28 126 25 164 0.74 Serine aminopeptidase, S33 FSH1 PF03959.13 212 pCM007886_00003 - 239 0.0031 17.2 0.1 1 2 0.016 42 3.7 0.0 5 26 26 47 23 61 0.81 Serine hydrolase (FSH1) FSH1 PF03959.13 212 pCM007886_00003 - 239 0.0031 17.2 0.1 2 2 0.0001 0.26 10.9 0.0 151 201 176 223 85 225 0.74 Serine hydrolase (FSH1) Lipase_3 PF01764.25 142 pCM007886_00003 - 239 0.018 14.9 0.0 1 2 2e-05 0.051 13.5 0.0 44 83 57 108 17 113 0.74 Lipase (class 3) Lipase_3 PF01764.25 142 pCM007886_00003 - 239 0.018 14.9 0.0 2 2 1 2.7e+03 -1.9 0.0 46 71 167 192 141 194 0.65 Lipase (class 3) Abhydrolase_4 PF08386.10 103 pCM007886_00003 - 239 0.053 13.6 0.0 1 1 3.2e-05 0.083 13.0 0.0 32 65 182 215 169 238 0.78 TAP-like protein Rota_VP2 PF05087.12 884 pCM007886_00003 - 239 0.056 11.6 0.0 1 1 2.7e-05 0.069 11.3 0.0 724 781 52 109 43 136 0.81 Rotavirus VP2 protein PhdYeFM_antitox PF02604.19 75 pCM007886_00004 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system Dala_Dala_lig_C PF07478.13 204 pCM007886_00005 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 pCM007886_00005 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 pCM007886_00005 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 pCM007886_00005 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 pCM007886_00005 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 pCM007886_00005 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 pCM007886_00005 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 pCM007886_00005 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 pCM007886_00005 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain HHH_5 PF14520.6 57 pCM007886_00006 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 pCM007886_00006 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 pCM007886_00006 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 pCM007886_00006 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 pCM007886_00006 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 pCM007886_00006 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 pCM007886_00006 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 pCM007886_00006 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 pCM007886_00006 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 pCM007886_00006 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 pCM007886_00006 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 pCM007886_00006 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 pCM007886_00006 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCM007886_00006 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 pCM007886_00006 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 pCM007886_00006 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 pCM007886_00006 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 pCM007886_00006 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 pCM007886_00006 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 pCM007886_00006 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 pCM007886_00006 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 pCM007886_00006 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda FapA PF03961.13 454 pCM007886_00007 - 619 3.5e-30 105.0 37.0 1 1 1.2e-33 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 pCM007886_00007 - 619 0.027 13.8 8.1 1 1 1.4e-05 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein Viral_P18 PF04521.13 122 pCM007886_00007 - 619 0.15 11.8 2.3 1 3 0.35 1.6e+03 -1.1 0.0 84 105 175 196 144 255 0.79 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 pCM007886_00007 - 619 0.15 11.8 2.3 2 3 0.0048 21 4.9 0.0 83 122 426 465 412 465 0.83 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 pCM007886_00007 - 619 0.15 11.8 2.3 3 3 0.0091 41 4.0 0.4 71 97 502 528 493 542 0.83 ssRNA positive strand viral 18kD cysteine rich protein APG6_N PF17675.1 133 pCM007886_00007 - 619 0.29 11.7 8.6 1 1 0.00031 1.4 9.5 8.6 30 123 436 526 426 546 0.84 Apg6 coiled-coil region MurJ PF03023.14 452 pCM007886_00008 - 483 1e-91 307.8 60.1 1 1 1.9e-95 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ Bunya_G2 PF03563.13 285 pCM007886_00008 - 483 1.5 8.0 7.4 1 1 0.00035 3.1 7.0 7.4 186 221 443 478 434 483 0.91 Bunyavirus glycoprotein G2 tRNA-synt_1e PF01406.19 301 pCM007886_00009 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 pCM007886_00009 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 pCM007886_00009 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 pCM007886_00009 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 pCM007886_00009 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 pCM007886_00009 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 pCM007886_00009 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 pCM007886_00009 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 pCM007886_00009 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 pCM007886_00009 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 pCM007886_00009 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 pCM007886_00009 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) ABC_membrane PF00664.23 274 pCM007886_00010 - 580 4.4e-48 164.3 8.4 1 1 3.6e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 pCM007886_00010 - 580 4.9e-31 108.1 0.1 1 1 5.5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 pCM007886_00010 - 580 6e-10 38.9 5.9 1 1 8.5e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 pCM007886_00010 - 580 0.00081 19.3 0.2 1 2 4.6 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 pCM007886_00010 - 580 0.00081 19.3 0.2 2 2 1.2e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 pCM007886_00010 - 580 0.0025 18.1 0.4 1 1 1.7e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 pCM007886_00010 - 580 0.0056 16.9 0.2 1 1 2.8e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 pCM007886_00010 - 580 0.0098 15.6 0.1 1 1 2.5e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 pCM007886_00010 - 580 0.024 15.0 0.3 1 3 1 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 pCM007886_00010 - 580 0.024 15.0 0.3 2 3 1.5e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 pCM007886_00010 - 580 0.024 15.0 0.3 3 3 0.91 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 pCM007886_00010 - 580 0.035 14.5 0.0 1 1 5.7e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 pCM007886_00010 - 580 0.094 12.5 0.7 1 2 4.6 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pCM007886_00010 - 580 0.094 12.5 0.7 2 2 0.00012 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 114 pCM007886_00010 - 580 0.11 12.6 0.9 1 1 0.00033 0.53 10.4 0.9 2 42 369 417 368 550 0.69 50S ribosome-binding GTPase DHO_dh PF01180.21 295 pCM007886_00011 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 pCM007886_00011 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 pCM007886_00011 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 pCM007886_00011 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 pCM007886_00011 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family Peptidase_M16_C PF05193.21 183 pCM007886_00012 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 pCM007886_00012 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 pCM007886_00012 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 pCM007886_00012 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 pCM007886_00012 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 pCM007886_00012 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHDPS PF00701.22 289 pCM007886_00013 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 pCM007886_00013 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 pCM007886_00013 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 adh_short_C2 PF13561.6 234 pCM007886_00014 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 pCM007886_00014 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 pCM007886_00014 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 pCM007886_00014 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 pCM007886_00014 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif DUF1129 PF06570.11 206 pCM007886_00015 - 101 0.24 10.9 5.2 1 1 3.7e-05 0.67 9.4 3.4 80 129 1 68 1 74 0.83 Protein of unknown function (DUF1129) Lactamase_B PF00753.27 197 pCM007886_00016 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 pCM007886_00016 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain NAD_synthase PF02540.17 242 pCM007886_00017 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 pCM007886_00017 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 pCM007886_00017 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 pCM007886_00017 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 pCM007886_00017 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 pCM007886_00017 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 pCM007886_00017 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 pCM007886_00017 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 pCM007886_00017 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family LpxK PF02606.14 327 pCM007886_00018 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 pCM007886_00018 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 pCM007886_00018 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCM007886_00018 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) PALP PF00291.25 294 pCM007886_00019 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 pCM007886_00019 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 pCM007886_00019 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 pCM007886_00019 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 pCM007886_00019 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 pCM007886_00019 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain CTP_transf_3 PF02348.19 221 pCM007886_00020 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 pCM007886_00020 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 pCM007886_00020 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 pCM007886_00020 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 pCM007886_00020 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain MAF_flag10 PF01973.18 171 pCM007887_00001 - 462 3.7e-42 143.9 0.7 1 2 6.1e-46 5.4e-42 143.4 0.1 2 170 59 226 58 227 0.91 Protein of unknown function DUF115 MAF_flag10 PF01973.18 171 pCM007887_00001 - 462 3.7e-42 143.9 0.7 2 2 0.84 7.5e+03 -3.5 0.0 60 91 359 390 358 395 0.70 Protein of unknown function DUF115 Med15_fungi PF05397.12 112 pCM007887_00001 - 462 0.011 16.0 0.7 1 2 0.041 3.7e+02 1.4 0.0 78 108 260 290 243 292 0.83 Mediator complex subunit 15 Med15_fungi PF05397.12 112 pCM007887_00001 - 462 0.011 16.0 0.7 2 2 1.6e-05 0.15 12.4 0.2 56 105 339 388 325 394 0.85 Mediator complex subunit 15 Mur_ligase_M PF08245.12 192 pCM007888_00001 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 pCM007888_00001 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 pCM007888_00001 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain DUF4570 PF15134.6 110 pCM007888_00002 - 423 0.17 11.9 1.7 1 1 1.8e-05 0.32 11.0 1.7 27 98 4 76 1 84 0.78 Domain of unknown function (DUF4570) CTP_transf_3 PF02348.19 221 pCM007888_00003 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 pCM007888_00003 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 pCM007888_00003 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 pCM007888_00003 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 pCM007888_00003 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain PALP PF00291.25 294 pCM007888_00004 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 pCM007888_00004 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 pCM007888_00004 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 pCM007888_00004 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 pCM007888_00004 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 pCM007888_00004 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain LpxK PF02606.14 327 pCM007888_00005 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 pCM007888_00005 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 pCM007888_00005 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCM007888_00005 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) NAD_synthase PF02540.17 242 pCM007888_00006 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 pCM007888_00006 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 pCM007888_00006 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 pCM007888_00006 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 pCM007888_00006 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 pCM007888_00006 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 pCM007888_00006 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 pCM007888_00006 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 pCM007888_00006 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family Lactamase_B PF00753.27 197 pCM007888_00007 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 pCM007888_00007 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain DUF1129 PF06570.11 206 pCM007888_00008 - 101 0.24 10.9 5.2 1 1 3.7e-05 0.67 9.4 3.4 80 129 1 68 1 74 0.83 Protein of unknown function (DUF1129) adh_short_C2 PF13561.6 234 pCM007888_00009 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 pCM007888_00009 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 pCM007888_00009 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 pCM007888_00009 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 pCM007888_00009 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif DHDPS PF00701.22 289 pCM007888_00010 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 pCM007888_00010 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 pCM007888_00010 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 Peptidase_M16_C PF05193.21 183 pCM007888_00011 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 pCM007888_00011 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 pCM007888_00011 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 pCM007888_00011 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 pCM007888_00011 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 pCM007888_00011 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHO_dh PF01180.21 295 pCM007888_00012 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 pCM007888_00012 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 pCM007888_00012 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 pCM007888_00012 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 pCM007888_00012 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family ABC_membrane PF00664.23 274 pCM007888_00013 - 580 4.4e-48 164.3 8.4 1 1 3.6e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 pCM007888_00013 - 580 4.9e-31 108.1 0.1 1 1 5.5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 pCM007888_00013 - 580 6e-10 38.9 5.9 1 1 8.5e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 pCM007888_00013 - 580 0.00081 19.3 0.2 1 2 4.6 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 pCM007888_00013 - 580 0.00081 19.3 0.2 2 2 1.2e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 pCM007888_00013 - 580 0.0025 18.1 0.4 1 1 1.7e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 pCM007888_00013 - 580 0.0056 16.9 0.2 1 1 2.8e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 pCM007888_00013 - 580 0.0098 15.6 0.1 1 1 2.5e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 pCM007888_00013 - 580 0.024 15.0 0.3 1 3 1 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 pCM007888_00013 - 580 0.024 15.0 0.3 2 3 1.5e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 pCM007888_00013 - 580 0.024 15.0 0.3 3 3 0.91 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 pCM007888_00013 - 580 0.035 14.5 0.0 1 1 5.7e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 pCM007888_00013 - 580 0.094 12.5 0.7 1 2 4.6 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pCM007888_00013 - 580 0.094 12.5 0.7 2 2 0.00012 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 114 pCM007888_00013 - 580 0.11 12.6 0.9 1 1 0.00033 0.53 10.4 0.9 2 42 369 417 368 550 0.69 50S ribosome-binding GTPase tRNA-synt_1e PF01406.19 301 pCM007888_00014 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 pCM007888_00014 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 pCM007888_00014 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 pCM007888_00014 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 pCM007888_00014 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 pCM007888_00014 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 pCM007888_00014 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 pCM007888_00014 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 pCM007888_00014 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 pCM007888_00014 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 pCM007888_00014 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 pCM007888_00014 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) MurJ PF03023.14 452 pCM007888_00015 - 483 1e-91 307.8 60.1 1 1 1.9e-95 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ Bunya_G2 PF03563.13 285 pCM007888_00015 - 483 1.5 8.0 7.4 1 1 0.00035 3.1 7.0 7.4 186 221 443 478 434 483 0.91 Bunyavirus glycoprotein G2 FapA PF03961.13 454 pCM007888_00016 - 619 3.5e-30 105.0 37.0 1 1 1.2e-33 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 pCM007888_00016 - 619 0.027 13.8 8.1 1 1 1.4e-05 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein Viral_P18 PF04521.13 122 pCM007888_00016 - 619 0.15 11.8 2.3 1 3 0.35 1.6e+03 -1.1 0.0 84 105 175 196 144 255 0.79 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 pCM007888_00016 - 619 0.15 11.8 2.3 2 3 0.0048 21 4.9 0.0 83 122 426 465 412 465 0.83 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 pCM007888_00016 - 619 0.15 11.8 2.3 3 3 0.0091 41 4.0 0.4 71 97 502 528 493 542 0.83 ssRNA positive strand viral 18kD cysteine rich protein APG6_N PF17675.1 133 pCM007888_00016 - 619 0.29 11.7 8.6 1 1 0.00031 1.4 9.5 8.6 30 123 436 526 426 546 0.84 Apg6 coiled-coil region HHH_5 PF14520.6 57 pCM007888_00017 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 pCM007888_00017 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 pCM007888_00017 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 pCM007888_00017 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 pCM007888_00017 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 pCM007888_00017 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 pCM007888_00017 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 pCM007888_00017 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 pCM007888_00017 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 pCM007888_00017 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 pCM007888_00017 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 pCM007888_00017 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 pCM007888_00017 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCM007888_00017 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 pCM007888_00017 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 pCM007888_00017 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 pCM007888_00017 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 pCM007888_00017 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 pCM007888_00017 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 pCM007888_00017 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 pCM007888_00017 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 pCM007888_00017 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda Dala_Dala_lig_C PF07478.13 204 pCM007888_00018 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 pCM007888_00018 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 pCM007888_00018 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 pCM007888_00018 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 pCM007888_00018 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 pCM007888_00018 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 pCM007888_00018 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 pCM007888_00018 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 pCM007888_00018 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain PhdYeFM_antitox PF02604.19 75 pCM007888_00019 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system W2 PF02020.18 79 pCP000549_00001 - 357 0.037 14.2 0.0 1 1 5.5e-06 0.099 12.8 0.0 38 77 271 331 267 333 0.86 eIF4-gamma/eIF5/eIF2-epsilon Lip_prot_lig_C PF10437.9 85 pCP000549_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCP000549_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pCP000549_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP000549_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pCP000549_00003 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCP000549_00003 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 pCP000549_00004 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP000549_00004 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP000549_00004 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pCP000549_00004 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pCP000549_00004 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pCP000549_00004 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP000549_00004 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP000549_00004 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP000549_00004 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 pCP000549_00005 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP000549_00005 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP000549_00005 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP000549_00005 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP000549_00005 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP000549_00005 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pCP000549_00006 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP000549_00006 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pCP000549_00007 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP000549_00007 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP000549_00007 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP000549_00007 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP000549_00007 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP000549_00007 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pCP000549_00008 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pCP000549_00009 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP000549_00009 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP000549_00009 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP000549_00009 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP000549_00009 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP000549_00009 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP000549_00009 - 1932 9.9e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP000549_00009 - 1932 9.9e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP000549_00009 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP000549_00009 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP000549_00009 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP000549_00009 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 pCP000549_00010 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pCP000549_00010 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 pCP000549_00011 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP000549_00011 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pCP000549_00012 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP000549_00012 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP000549_00012 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP000549_00012 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP000549_00012 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP000549_00012 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP000549_00012 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pCP000549_00012 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP000549_00012 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pCP000549_00012 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP000549_00012 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 pCP000549_00013 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pCP000549_00013 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP000549_00013 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pCP000549_00013 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP000549_00013 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 pCP000549_00015 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pCP000549_00015 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pCP000549_00016 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pCP000549_00016 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 pCP000549_00016 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pCP000549_00016 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP000549_00016 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pCP000549_00017 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pCP000549_00017 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) UBA_6 PF18039.1 42 pCP000549_00018 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 pCP000549_00018 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pCP000549_00018 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 pCP000549_00018 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 pCP000549_00019 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pCP000549_00019 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 pCP000549_00019 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pCP000549_00021 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pCP000549_00022 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pCP000549_00023 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pCP000549_00023 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP000549_00023 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP000549_00023 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP000549_00023 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pCP000549_00023 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP000549_00023 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pCP000549_00023 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pCP000549_00023 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pCP000549_00023 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pCP000549_00023 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pCP000549_00023 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 pCP000549_00024 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP000549_00024 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP000549_00024 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP000549_00024 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP000549_00024 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP000549_00024 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP000549_00024 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCP000549_00024 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP000549_00024 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP000549_00024 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pCP000549_00025 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP000549_00025 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pCP000549_00025 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pCP000549_00027 - 87 3.5e-13 49.6 6.7 1 1 4.5e-17 4e-13 49.4 6.7 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP000549_00027 - 87 0.17 11.8 4.4 1 1 2.6e-05 0.23 11.3 4.4 78 135 37 87 9 87 0.70 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pCP000549_00028 - 922 4.9e-50 170.5 0.5 1 1 1.9e-53 1.2e-49 169.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP000549_00028 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pCP000549_00028 - 922 0.048 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pCP000549_00029 - 188 2e-29 102.0 0.1 1 1 1.9e-33 3.3e-29 101.3 0.1 2 88 24 122 23 122 0.83 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 pCP000549_00030 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pCP000549_00030 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pCP000549_00030 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pCP000549_00030 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP000549_00030 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP000549_00030 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pCP000549_00030 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP000549_00030 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP000549_00030 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pCP000549_00030 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pCP000549_00030 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pCP000549_00030 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP000549_00030 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP000549_00030 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pCP000549_00031 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pCP000549_00032 - 91 0.00046 19.9 6.9 1 2 5.3e-08 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP000549_00032 - 91 0.00046 19.9 6.9 2 2 0.014 1.3e+02 2.5 0.2 31 52 57 78 56 80 0.82 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP000549_00032 - 91 0.0053 17.3 1.0 1 1 6.9e-07 0.0062 17.1 1.0 21 87 9 81 1 85 0.90 FliG N-terminal domain T4SS PF07996.11 197 pCP000549_00033 - 323 7.9e-29 101.5 13.4 1 1 4e-32 1e-28 101.1 13.4 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP000549_00033 - 323 0.0081 16.3 0.6 1 2 0.99 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP000549_00033 - 323 0.0081 16.3 0.6 2 2 1.2e-05 0.03 14.5 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP000549_00033 - 323 0.014 16.1 5.0 1 2 0.046 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP000549_00033 - 323 0.014 16.1 5.0 2 2 5.3e-06 0.014 16.1 5.0 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 pCP000549_00033 - 323 0.043 14.5 0.8 1 2 2.2 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP000549_00033 - 323 0.043 14.5 0.8 2 2 1.7e-05 0.043 14.5 0.8 32 84 209 270 202 296 0.83 von Willebrand factor type A domain KNOX2 PF03791.13 48 pCP000549_00033 - 323 0.07 12.6 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pCP000549_00033 - 323 0.07 12.6 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain THOC7 PF05615.13 132 pCP000549_00033 - 323 1.2 9.4 11.3 1 2 0.00061 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pCP000549_00033 - 323 1.2 9.4 11.3 2 2 0.17 4.4e+02 1.1 6.3 16 71 231 294 202 315 0.50 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pCP000549_00033 - 323 3.5 7.1 7.2 1 2 0.19 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pCP000549_00033 - 323 3.5 7.1 7.2 2 2 0.00046 1.2 8.6 3.3 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein TrbL PF04610.14 215 pCP000549_00034 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP000549_00034 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP000549_00034 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP000549_00034 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP000549_00034 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pCP000549_00035 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP000549_00035 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pCP000549_00036 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP000549_00036 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pCP000549_00037 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP000549_00037 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP000549_00037 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pCP000549_00038 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP000549_00038 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pCP000549_00039 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP000549_00039 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP000549_00039 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP000549_00039 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP000549_00039 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP000549_00039 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP000549_00039 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP000549_00039 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP000549_00039 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP000549_00039 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP000549_00039 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP000549_00039 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP000549_00039 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP000549_00039 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP000549_00039 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP000549_00039 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP000549_00039 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP000549_00039 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP000549_00039 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP000549_00039 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP000549_00039 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP000549_00039 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP000549_00039 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP000549_00039 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP000549_00039 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP000549_00039 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP000549_00039 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP000549_00039 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP000549_00039 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP000549_00039 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP000549_00039 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP000549_00039 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pCP000549_00040 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP000549_00040 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP000549_00040 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP000549_00040 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP000549_00040 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pCP000549_00041 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pCP000549_00041 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pCP000549_00041 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP000549_00041 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP000549_00041 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pCP000549_00042 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pCP000549_00043 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCP000549_00043 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP000549_00043 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP000549_00043 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP000549_00043 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP000549_00043 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pCP000549_00045 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP000549_00045 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pCP000549_00046 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP000549_00046 - 730 5.6e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP000549_00046 - 730 5.6e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP000549_00046 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP000549_00046 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP000549_00046 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP000549_00046 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP000549_00046 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP000549_00046 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP000549_00046 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP000549_00046 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP000549_00046 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pCP000549_00046 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pCP000549_00046 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pCP000549_00046 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP000549_00046 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP000549_00046 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP000549_00046 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pCP000549_00046 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pCP000549_00046 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP000549_00046 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pCP000549_00046 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP000549_00046 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP000549_00046 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP000549_00046 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP000549_00046 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP000549_00046 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP000549_00046 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP000549_00046 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP000549_00046 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP000549_00046 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP000549_00046 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP000549_00046 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP000549_00046 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pCP000549_00047 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP000549_00047 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pCP000549_00049 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP000549_00049 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP000549_00049 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP000549_00049 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP000549_00049 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP000549_00049 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP000549_00049 - 639 0.00029 21.1 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP000549_00049 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP000549_00049 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP000549_00049 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 pCP000549_00049 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 pCP000549_00050 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pCP000549_00050 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 pCP004067_00001 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pCP004067_00001 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pCP004067_00001 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 pCP004067_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCP004067_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pCP004067_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP004067_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain DHHC PF01529.20 134 pCP004067_00004 - 107 4.1 7.5 13.1 1 1 0.0014 13 5.9 13.1 29 78 15 64 9 105 0.49 DHHC palmitoyltransferase DUF4133 PF13571.6 91 pCP004067_00004 - 107 5.6 7.4 7.4 1 1 0.00084 7.5 7.0 6.7 19 65 34 80 30 92 0.77 Domain of unknown function (DUF4133) DHHC PF01529.20 134 pCP004067_00006 - 89 0.033 14.3 6.3 1 1 4.4e-06 0.039 14.0 6.3 53 119 2 67 1 74 0.81 DHHC palmitoyltransferase T4SS_CagC PF16943.5 107 pCP004067_00006 - 89 0.046 13.9 0.2 1 1 6.2e-06 0.056 13.6 0.2 45 99 2 56 1 65 0.72 Cag pathogenicity island, type IV secretory system DUF4044 PF13253.6 33 pCP004067_00008 - 189 0.035 13.6 0.8 1 1 1.4e-05 0.062 12.8 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP004067_00008 - 189 0.065 13.0 0.1 1 1 2e-05 0.091 12.5 0.1 81 149 12 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction DUF2070 PF09843.9 564 pCP004067_00008 - 189 0.072 11.4 1.1 1 1 2.4e-05 0.11 10.8 1.1 127 214 24 108 11 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP004067_00008 - 189 9.1 6.0 13.6 1 2 3.3e-05 0.15 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP004067_00008 - 189 9.1 6.0 13.6 2 2 1.3 5.9e+03 -3.2 0.6 118 133 152 167 144 179 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pCP004067_00009 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP004067_00009 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) adh_short PF00106.25 195 pCP004067_00010 - 177 0.034 13.6 0.0 1 1 4.8e-06 0.043 13.3 0.0 17 109 60 162 52 170 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP004067_00010 - 177 0.1 12.9 0.0 1 1 2e-05 0.18 12.1 0.0 21 78 75 129 61 138 0.81 Mur ligase family, glutamate ligase domain RHH_7 PF16777.5 74 pCP004067_00011 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 pCP004067_00011 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal SNF2_N PF00176.23 350 pCP004067_00012 - 1931 3.7e-16 58.8 2.9 1 3 1.3e-19 4.5e-16 58.5 0.1 57 245 1017 1272 935 1313 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP004067_00012 - 1931 3.7e-16 58.8 2.9 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP004067_00012 - 1931 3.7e-16 58.8 2.9 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1875 1923 1845 1924 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP004067_00012 - 1931 7.5e-08 32.6 8.9 1 2 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP004067_00012 - 1931 7.5e-08 32.6 8.9 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1798 1909 1724 1931 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP004067_00012 - 1931 9.7e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP004067_00012 - 1931 9.7e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP004067_00012 - 1931 9.5e-06 25.5 2.0 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP004067_00012 - 1931 9.5e-06 25.5 2.0 2 2 0.12 4.2e+02 0.6 0.0 119 150 1882 1915 1827 1930 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP004067_00012 - 1931 2.5e-05 24.7 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP004067_00012 - 1931 2.5e-05 24.7 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 pCP004067_00013 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 pCP004067_00013 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 pCP004067_00013 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 pCP004067_00013 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) Acetyltransf_7 PF13508.7 76 pCP004067_00014 - 166 0.00015 22.1 0.0 1 1 1e-07 0.00031 21.1 0.0 29 75 12 75 2 76 0.60 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pCP004067_00014 - 166 0.003 17.8 0.0 1 1 2.5e-06 0.0073 16.5 0.0 65 92 14 41 6 74 0.80 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 pCP004067_00014 - 166 0.0052 16.8 0.3 1 1 2.7e-06 0.0082 16.2 0.3 24 67 103 146 86 150 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PHM7_cyt PF14703.6 176 pCP004067_00014 - 166 0.095 12.9 0.2 1 1 5.2e-05 0.15 12.2 0.2 30 85 98 153 86 159 0.81 Cytosolic domain of 10TM putative phosphate transporter Acetyltransf_10 PF13673.7 127 pCP004067_00014 - 166 0.12 12.4 0.0 1 1 0.00011 0.33 10.9 0.0 55 84 13 42 4 84 0.79 Acetyltransferase (GNAT) domain Spc24 PF08286.11 105 pCP004067_00014 - 166 0.39 11.0 3.2 1 2 0.00045 1.3 9.3 0.2 54 89 63 108 31 115 0.67 Spc24 subunit of Ndc80 Spc24 PF08286.11 105 pCP004067_00014 - 166 0.39 11.0 3.2 2 2 0.04 1.2e+02 3.0 0.7 12 43 111 142 101 152 0.69 Spc24 subunit of Ndc80 DUF3913 PF13052.6 57 pCP004067_00015 - 82 0.046 14.0 0.3 1 1 4.2e-06 0.076 13.3 0.2 29 53 35 58 28 62 0.76 Protein of unknown function (DUF3913) Relaxase PF03432.14 242 pCP004067_00016 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP004067_00016 - 462 4.7e-10 39.5 7.4 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pCP004067_00017 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP004067_00017 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP004067_00017 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP004067_00017 - 183 0.046 13.8 2.1 1 1 1.7e-05 0.063 13.4 1.5 55 131 19 103 9 124 0.70 Stage III sporulation protein AB (spore_III_AB) NLRC4_HD PF17889.1 107 pCP004067_00017 - 183 0.18 12.1 5.5 1 2 0.00027 0.98 9.8 1.8 14 92 6 84 3 98 0.81 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP004067_00017 - 183 0.18 12.1 5.5 2 2 0.016 56 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 pCP004067_00017 - 183 0.41 10.7 8.1 1 3 0.32 1.1e+03 -0.3 0.1 40 55 12 27 4 54 0.75 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP004067_00017 - 183 0.41 10.7 8.1 2 3 0.011 39 4.4 0.6 11 46 56 91 51 97 0.87 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP004067_00017 - 183 0.41 10.7 8.1 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pCP004067_00017 - 183 0.42 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP004067_00017 - 183 0.42 10.9 6.2 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 pCP004067_00018 - 99 1.1 9.1 11.3 1 2 4.4e-05 0.26 11.1 5.3 18 48 6 36 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP004067_00018 - 99 1.1 9.1 11.3 2 2 0.074 4.4e+02 0.7 0.1 97 112 60 75 46 85 0.67 CdvA-like coiled-coil domain ESP PF16590.5 91 pCP004067_00018 - 99 1.4 9.3 6.9 1 2 0.025 1.5e+02 2.7 1.5 26 73 3 47 2 53 0.62 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP004067_00018 - 99 1.4 9.3 6.9 2 2 5.2e-05 0.31 11.3 1.2 26 59 43 79 42 99 0.74 Exocrine gland-secreting peptide DUF3671 PF12420.8 115 pCP004067_00018 - 99 1.7 8.7 15.5 1 2 0.024 1.4e+02 2.6 3.6 24 49 17 42 3 46 0.72 Protein of unknown function DUF3671 PF12420.8 115 pCP004067_00018 - 99 1.7 8.7 15.5 2 2 2.6e-05 0.15 12.1 4.1 4 42 59 95 56 98 0.85 Protein of unknown function Ribonuc_2-5A PF06479.12 127 pCP004067_00022 - 152 0.065 13.4 5.2 1 1 2.2e-05 0.2 11.9 5.2 38 91 57 113 1 119 0.63 Ribonuclease 2-5A DUF5311 PF17238.2 194 pCP004067_00022 - 152 0.065 13.1 0.1 1 1 1e-05 0.089 12.7 0.1 88 125 72 111 46 123 0.81 Family of unknown function (DUF5311) Toprim_3 PF13362.6 95 pCP004067_00023 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pCP004067_00023 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pCP004067_00023 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pCP004067_00023 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP004067_00023 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pCP004067_00024 - 97 0.007 16.3 0.0 1 1 1.7e-06 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) nec1 PF10379.9 184 pCP004067_00024 - 97 0.067 12.7 0.0 1 1 1.1e-05 0.099 12.1 0.0 65 105 56 94 35 96 0.75 Virulence protein nec1 Sdh_cyt PF01127.22 121 pCP004067_00025 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 pCP004067_00025 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 pCP004067_00025 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pCP004067_00027 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pCP004067_00028 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pCP004067_00029 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP004067_00029 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP004067_00029 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP004067_00029 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP004067_00029 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pCP004067_00029 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 pCP004067_00029 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pCP004067_00029 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP004067_00029 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pCP004067_00029 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pCP004067_00029 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP004067_00029 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP004067_00029 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 pCP004067_00030 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP004067_00030 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP004067_00030 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP004067_00030 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP004067_00030 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP004067_00030 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP004067_00030 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain CRISPR_Cas2 PF09827.9 76 pCP004067_00031 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP004067_00031 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 TrbC PF04956.13 99 pCP004067_00033 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP004067_00033 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pCP004067_00034 - 922 3.1e-51 174.4 0.4 1 1 7.9e-55 7.1e-51 173.2 0.4 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP004067_00034 - 922 3.6e-21 75.2 0.8 1 1 6.9e-25 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein Phage_pRha PF09669.10 88 pCP004067_00035 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 pCP004067_00035 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 pCP004067_00035 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) PBECR2 PF18810.1 119 pCP004067_00036 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 SSB PF00436.25 104 pCP004067_00037 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pCP004067_00038 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP004067_00038 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP004067_00038 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP004067_00038 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP004067_00038 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP004067_00038 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP004067_00038 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pCP004067_00039 - 329 1.7e-28 100.4 13.1 1 1 5.2e-32 2.3e-28 99.9 13.1 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP004067_00039 - 329 0.0035 17.5 0.5 1 2 0.27 1.2e+03 -0.3 0.0 30 54 134 158 120 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP004067_00039 - 329 0.0035 17.5 0.5 2 2 4.7e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 pCP004067_00039 - 329 0.018 15.7 0.8 1 2 1.3 6e+03 -2.1 0.0 55 70 124 139 101 163 0.57 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP004067_00039 - 329 0.018 15.7 0.8 2 2 8.6e-06 0.039 14.6 0.2 31 84 208 270 197 295 0.83 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 pCP004067_00039 - 329 0.48 11.1 11.5 1 2 0.042 1.9e+02 2.7 0.8 49 135 108 145 95 182 0.47 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP004067_00039 - 329 0.48 11.1 11.5 2 2 8.9e-05 0.4 11.4 4.6 49 117 225 307 205 328 0.69 Apoptosis antagonizing transcription factor TrbL PF04610.14 215 pCP004067_00040 - 331 2.1e-30 106.1 33.3 1 2 4.7e-34 2.1e-30 106.1 33.3 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP004067_00040 - 331 2.1e-30 106.1 33.3 2 2 0.59 2.6e+03 -2.1 0.1 58 88 289 325 260 330 0.47 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP004067_00040 - 331 0.069 13.0 1.0 1 2 0.54 2.4e+03 -1.6 0.1 39 51 70 82 61 114 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP004067_00040 - 331 0.069 13.0 1.0 2 2 5e-05 0.23 11.3 0.1 37 81 243 287 222 298 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 pCP004067_00040 - 331 0.17 11.9 0.0 1 1 6.8e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) AIM3 PF17096.5 88 pCP004067_00040 - 331 0.3 12.1 6.0 1 1 0.00013 0.57 11.1 6.0 9 38 299 328 284 330 0.89 Altered inheritance of mitochondria protein 3 La_HTH_kDCL PF18177.1 90 pCP004067_00041 - 54 0.2 12.0 0.0 1 1 1.2e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain VirB8 PF04335.13 214 pCP004067_00042 - 219 1.6e-52 178.5 0.5 1 1 2e-56 1.8e-52 178.3 0.5 4 214 10 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pCP004067_00042 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pCP004067_00043 - 298 9.6e-56 188.8 1.9 1 1 8.4e-60 1.5e-55 188.2 1.9 2 211 32 273 31 273 0.92 Conjugal transfer protein TrbI PF03743.14 187 pCP004067_00044 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.5e+03 -3.4 0.3 136 154 141 166 120 174 0.53 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pCP004067_00044 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP004067_00044 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease T2SSE PF00437.20 273 pCP004067_00045 - 339 6.9e-55 186.0 0.0 1 1 1.4e-57 8.1e-55 185.8 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP004067_00045 - 339 7.2e-05 23.3 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP004067_00045 - 339 0.00012 21.6 0.0 1 1 3.2e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP004067_00045 - 339 0.00028 20.4 0.0 1 1 9.2e-07 0.00052 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP004067_00045 - 339 0.0014 18.9 0.0 1 1 4.7e-06 0.0026 18.0 0.0 5 56 160 221 155 244 0.72 AAA domain DEAD PF00270.29 176 pCP004067_00045 - 339 0.0014 18.4 0.0 1 1 4.1e-06 0.0023 17.7 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pCP004067_00045 - 339 0.0026 17.5 0.2 1 1 9.7e-06 0.0054 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pCP004067_00045 - 339 0.0035 17.3 0.0 1 1 1.3e-05 0.0073 16.3 0.0 10 45 152 186 141 194 0.74 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP004067_00045 - 339 0.0055 15.7 0.0 1 1 1.4e-05 0.0079 15.1 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP004067_00045 - 339 0.0073 16.2 0.0 1 1 2.3e-05 0.013 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP004067_00045 - 339 0.0088 15.4 0.0 1 1 2.6e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP004067_00045 - 339 0.0091 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 305 0.85 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pCP004067_00045 - 339 0.018 15.1 0.0 1 1 6.4e-05 0.036 14.2 0.0 27 48 164 185 142 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 pCP004067_00045 - 339 0.021 13.8 0.0 1 1 6.2e-05 0.035 13.0 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 pCP004067_00045 - 339 0.023 14.7 0.0 1 1 9.6e-05 0.054 13.5 0.0 5 50 147 186 135 248 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 pCP004067_00045 - 339 0.024 14.4 0.0 1 1 9.2e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 pCP004067_00045 - 339 0.026 14.2 0.0 1 1 9.8e-05 0.055 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pCP004067_00045 - 339 0.031 13.8 0.0 1 1 0.00011 0.061 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 pCP004067_00045 - 339 0.035 14.2 0.1 1 1 0.00019 0.11 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 pCP004067_00045 - 339 0.04 13.7 0.0 1 1 0.00011 0.064 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 pCP004067_00045 - 339 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 pCP004067_00045 - 339 0.046 13.0 0.0 1 1 0.00015 0.082 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin PRK PF00485.18 197 pCP004067_00045 - 339 0.058 13.1 0.0 1 1 0.0002 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP004067_00045 - 339 0.065 11.9 0.0 1 1 0.00016 0.092 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP004067_00045 - 339 0.075 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pCP004067_00045 - 339 0.089 12.7 0.0 1 1 0.00036 0.2 11.5 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pCP004067_00045 - 339 0.089 12.7 0.4 1 1 0.00039 0.22 11.5 0.3 71 102 149 179 129 220 0.81 Microtubule binding NTPase_1 PF03266.15 168 pCP004067_00045 - 339 0.11 12.4 0.1 1 1 0.00042 0.23 11.3 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 pCP004067_00045 - 339 0.12 13.0 0.0 1 2 8.1 4.6e+03 -1.9 0.0 25 60 14 49 4 61 0.76 AAA domain AAA_18 PF13238.6 130 pCP004067_00045 - 339 0.12 13.0 0.0 2 2 0.0007 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 pCP004067_00045 - 339 0.15 11.7 0.0 1 1 0.00043 0.24 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP004067_00045 - 339 0.15 11.7 0.0 1 1 0.00044 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pCP004067_00045 - 339 0.38 11.2 4.1 1 2 2.7 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 pCP004067_00045 - 339 0.38 11.2 4.1 2 2 0.00068 0.38 11.2 1.3 22 37 163 178 160 184 0.87 AAA domain Carbam_trans_N PF02543.15 338 pCP004067_00046 - 267 0.053 13.2 0.0 1 1 4.1e-06 0.073 12.7 0.0 195 313 117 236 74 243 0.86 Carbamoyltransferase N-terminus T4SS-DNA_transf PF02534.14 469 pCP004067_00047 - 603 8.3e-104 348.0 0.1 1 1 3.2e-107 1.1e-103 347.5 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP004067_00047 - 603 3.5e-24 85.2 0.0 1 1 1.9e-27 6.8e-24 84.3 0.0 2 125 406 528 405 529 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP004067_00047 - 603 3.2e-15 55.9 0.0 1 2 2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP004067_00047 - 603 3.2e-15 55.9 0.0 2 2 1.6e-13 5.8e-10 38.6 0.0 187 369 347 531 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 pCP004067_00047 - 603 0.17 11.9 0.1 1 1 8.3e-05 0.3 11.2 0.1 37 93 9 87 3 100 0.78 Putative Actinobacterial Holin-X, holin superfamily III ECF_trnsprt PF12822.7 172 pCP004067_00047 - 603 1.2 9.2 8.3 1 1 0.00056 2 8.5 8.3 101 168 4 79 1 81 0.85 ECF transporter, substrate-specific component Cag12 PF13117.6 97 pCP004067_00048 - 143 1.4e-16 60.7 0.3 1 1 2.1e-20 1.9e-16 60.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pCP004067_00048 - 143 0.06 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 pCP004067_00049 - 252 4.1e-38 130.8 2.0 1 1 2.9e-42 5.3e-38 130.4 2.0 1 154 25 190 25 192 0.88 TrbM PRELI PF04707.14 157 pCP004067_00050 - 265 0.044 13.6 0.3 1 2 0.26 2.4e+03 -1.8 0.1 107 133 23 45 5 72 0.49 PRELI-like family PRELI PF04707.14 157 pCP004067_00050 - 265 0.044 13.6 0.3 2 2 4.9e-06 0.044 13.6 0.3 96 155 83 147 78 149 0.87 PRELI-like family TACC_C PF05010.14 201 pCP004067_00050 - 265 0.92 9.3 9.3 1 2 0.00027 2.4 7.9 8.2 14 124 2 111 1 135 0.79 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 pCP004067_00050 - 265 0.92 9.3 9.3 2 2 0.035 3.2e+02 1.0 1.1 8 45 100 139 94 148 0.70 Transforming acidic coiled-coil-containing protein (TACC), C-terminal CdhD PF03599.16 386 pCP004067_00051 - 246 0.002 16.9 0.0 1 1 5.3e-07 0.0031 16.3 0.0 269 358 39 127 30 136 0.86 CO dehydrogenase/acetyl-CoA synthase delta subunit Pox_RNA_pol PF03293.14 160 pCP004067_00051 - 246 0.012 15.3 0.9 1 1 4.5e-06 0.027 14.2 0.9 35 158 20 138 7 140 0.83 Poxvirus DNA-directed RNA polymerase, 18 kD subunit Redoxin PF08534.10 147 pCP004067_00051 - 246 0.059 13.1 0.5 1 2 0.079 4.7e+02 0.4 0.0 117 146 49 76 31 77 0.79 Redoxin Redoxin PF08534.10 147 pCP004067_00051 - 246 0.059 13.1 0.5 2 2 7.9e-05 0.47 10.2 0.1 49 76 184 213 178 230 0.79 Redoxin DUF1461 PF07314.11 189 pCP004067_00052 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) Topoisom_bac PF01131.20 413 pCP004067_00053 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP004067_00053 - 730 6.3e-12 45.6 2.6 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP004067_00053 - 730 6.3e-12 45.6 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP004067_00053 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP004067_00053 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP004067_00053 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP004067_00053 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP004067_00053 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP004067_00053 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP004067_00053 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP004067_00053 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP004067_00053 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pCP004067_00053 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pCP004067_00053 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pCP004067_00053 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP004067_00053 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP004067_00053 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP004067_00053 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pCP004067_00053 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pCP004067_00053 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP004067_00053 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pCP004067_00053 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP004067_00053 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP004067_00053 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP004067_00053 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP004067_00053 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP004067_00053 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP004067_00053 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP004067_00053 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP004067_00053 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP004067_00053 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP004067_00053 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP004067_00053 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP004067_00053 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pCP004067_00054 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP004067_00054 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain APH PF01636.23 240 pCP004067_00056 - 306 5.8e-22 78.8 0.0 1 1 2.1e-25 7.5e-22 78.4 0.0 13 230 39 256 27 265 0.75 Phosphotransferase enzyme family RIO1 PF01163.22 188 pCP004067_00056 - 306 2.1e-06 27.5 0.1 1 2 0.00064 2.3 7.8 0.0 47 111 52 117 46 131 0.76 RIO1 family RIO1 PF01163.22 188 pCP004067_00056 - 306 2.1e-06 27.5 0.1 2 2 5.8e-07 0.0021 17.7 0.1 97 154 165 223 149 253 0.81 RIO1 family DUF1679 PF07914.11 414 pCP004067_00056 - 306 0.00034 19.6 0.1 1 2 1 3.7e+03 -3.6 0.0 113 142 60 89 55 92 0.78 Protein of unknown function (DUF1679) DUF1679 PF07914.11 414 pCP004067_00056 - 306 0.00034 19.6 0.1 2 2 1.6e-07 0.00056 18.9 0.0 213 318 134 238 102 253 0.70 Protein of unknown function (DUF1679) Choline_kinase PF01633.20 213 pCP004067_00056 - 306 0.00076 19.1 0.2 1 2 5.9e-07 0.0021 17.7 0.1 21 171 61 218 46 219 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 pCP004067_00056 - 306 0.00076 19.1 0.2 2 2 0.51 1.8e+03 -1.7 0.0 6 25 249 268 247 271 0.89 Choline/ethanolamine kinase EcKinase PF02958.20 294 pCP004067_00056 - 306 0.0095 15.3 0.1 1 1 3.7e-06 0.013 14.8 0.1 189 270 162 243 121 262 0.65 Ecdysteroid kinase GTP_EFTU PF00009.27 194 pCP004067_00057 - 639 5.6e-59 198.9 0.3 1 1 3.9e-62 7.8e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP004067_00057 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP004067_00057 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP004067_00057 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP004067_00057 - 639 2.1e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP004067_00057 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP004067_00057 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP004067_00057 - 639 0.0091 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP004067_00057 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP004067_00057 - 639 0.05 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family CPSF_A PF03178.15 322 pCP004067_00059 - 95 0.034 13.4 0.0 1 1 9.6e-06 0.034 13.4 0.0 248 286 57 94 23 95 0.80 CPSF A subunit region ATPase PF06745.13 231 pCP004067_00059 - 95 0.048 13.0 0.2 1 1 1.4e-05 0.049 13.0 0.2 73 152 7 87 1 94 0.74 KaiC TipAS PF07739.13 117 pCP004067_00059 - 95 0.061 13.9 1.5 1 1 0.00033 1.2 9.7 1.9 27 96 5 80 1 92 0.80 TipAS antibiotic-recognition domain 3HCDH PF00725.22 97 pCP004067_00059 - 95 0.091 13.4 0.2 1 1 3.8e-05 0.14 12.8 0.2 7 65 36 93 33 95 0.91 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DUF4942 PF13708.6 199 pCP004067_00059 - 95 0.15 12.0 0.0 1 1 7.1e-05 0.26 11.3 0.0 22 74 36 87 33 93 0.88 Domain of unknown function (DUF4942) PNP_UDP_1 PF01048.20 234 pCP004067_00060 - 256 7.6e-29 100.6 0.0 1 1 4.8e-33 8.7e-29 100.4 0.0 3 219 34 237 32 255 0.86 Phosphorylase superfamily DUF4111 PF13427.6 103 pCP004067_00061 - 218 3.1e-17 62.6 0.0 1 3 0.56 2.5e+03 -1.3 0.0 60 80 3 23 2 25 0.81 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pCP004067_00061 - 218 3.1e-17 62.6 0.0 2 3 1.5 6.8e+03 -2.7 0.0 8 22 52 66 50 72 0.73 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pCP004067_00061 - 218 3.1e-17 62.6 0.0 3 3 3.9e-20 1.8e-16 60.2 0.0 1 67 148 214 148 217 0.97 Domain of unknown function (DUF4111) Polbeta PF18765.1 93 pCP004067_00061 - 218 8.7e-10 38.6 0.0 1 2 8.5e-13 3.8e-09 36.5 0.0 8 74 22 92 11 97 0.77 Polymerase beta, Nucleotidyltransferase Polbeta PF18765.1 93 pCP004067_00061 - 218 8.7e-10 38.6 0.0 2 2 0.33 1.5e+03 -0.6 0.0 17 42 103 134 98 153 0.72 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 95 pCP004067_00061 - 218 2.4e-06 27.8 0.0 1 1 1e-09 4.5e-06 26.9 0.0 14 76 25 89 11 107 0.76 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 199 pCP004067_00061 - 218 0.00015 21.7 0.0 1 1 4.6e-08 0.00021 21.3 0.0 88 138 21 71 2 84 0.86 Adenylate cyclase NT domain DUF4111 PF13427.6 103 pCP004067_00062 - 55 0.0023 18.0 0.0 1 1 1.5e-07 0.0027 17.9 0.0 69 103 13 47 7 47 0.95 Domain of unknown function (DUF4111) AAA_18 PF13238.6 130 pCP004067_00063 - 181 5.7e-14 52.8 0.0 1 1 1.6e-16 7.6e-14 52.4 0.0 1 124 7 135 7 141 0.86 AAA domain CPT PF07931.12 174 pCP004067_00063 - 181 3e-09 37.0 0.0 1 1 1.2e-11 5.8e-09 36.0 0.0 1 172 4 172 4 174 0.81 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 pCP004067_00063 - 181 6.4e-09 36.1 0.0 1 1 1.9e-11 9.4e-09 35.6 0.0 2 136 7 144 6 146 0.81 AAA domain Zeta_toxin PF06414.12 199 pCP004067_00063 - 181 1.5e-08 34.2 0.0 1 1 7.5e-11 3.6e-08 32.9 0.0 18 162 6 140 2 174 0.78 Zeta toxin AAA PF00004.29 132 pCP004067_00063 - 181 8.7e-06 26.2 0.2 1 2 1.7e-07 8.1e-05 23.1 0.0 2 34 8 41 7 83 0.78 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP004067_00063 - 181 8.7e-06 26.2 0.2 2 2 0.71 3.5e+02 1.6 0.0 104 131 108 135 56 136 0.84 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 163 pCP004067_00063 - 181 0.0001 22.6 0.1 1 2 8.3e-07 0.0004 20.7 0.0 2 62 7 71 6 85 0.62 AAA domain AAA_28 PF13521.6 163 pCP004067_00063 - 181 0.0001 22.6 0.1 2 2 2.6 1.2e+03 -0.4 0.1 137 137 133 133 91 177 0.52 AAA domain AAA_17 PF13207.6 136 pCP004067_00063 - 181 0.0002 21.8 0.0 1 1 7.1e-07 0.00035 21.0 0.0 1 128 10 131 10 139 0.78 AAA domain AAA_22 PF13401.6 137 pCP004067_00063 - 181 0.00034 20.9 0.0 1 2 2e-06 0.00099 19.4 0.0 4 33 3 32 1 84 0.83 AAA domain AAA_22 PF13401.6 137 pCP004067_00063 - 181 0.00034 20.9 0.0 2 2 3.7 1.8e+03 -0.9 0.0 62 83 121 141 96 178 0.64 AAA domain AAA_14 PF13173.6 131 pCP004067_00063 - 181 0.00043 20.3 0.0 1 1 1.4e-06 0.00066 19.7 0.0 2 127 4 141 3 145 0.72 AAA domain RuvB_N PF05496.12 159 pCP004067_00063 - 181 0.0016 18.2 0.1 1 2 1.2e-05 0.0057 16.4 0.0 36 60 7 31 3 49 0.85 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 pCP004067_00063 - 181 0.0016 18.2 0.1 2 2 3.1 1.5e+03 -1.2 0.0 96 114 111 129 104 167 0.72 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 146 pCP004067_00063 - 181 0.0024 18.2 0.0 1 1 8.6e-06 0.0042 17.4 0.0 9 35 3 29 1 77 0.87 AAA domain ABC_tran PF00005.27 137 pCP004067_00063 - 181 0.0031 18.0 0.1 1 1 8.5e-06 0.0041 17.6 0.1 9 43 2 35 1 133 0.85 ABC transporter AAA_16 PF13191.6 170 pCP004067_00063 - 181 0.0045 17.4 0.0 1 1 1.9e-05 0.0092 16.4 0.0 22 62 2 43 1 76 0.75 AAA ATPase domain KTI12 PF08433.10 272 pCP004067_00063 - 181 0.0048 16.4 0.0 1 2 2e-05 0.0095 15.4 0.0 3 42 6 44 5 87 0.74 Chromatin associated protein KTI12 KTI12 PF08433.10 272 pCP004067_00063 - 181 0.0048 16.4 0.0 2 2 4.5 2.2e+03 -2.2 0.0 263 263 137 137 104 174 0.57 Chromatin associated protein KTI12 DUF2075 PF09848.9 363 pCP004067_00063 - 181 0.005 16.1 0.2 1 1 1.6e-05 0.0077 15.5 0.1 2 29 5 32 4 68 0.84 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.20 158 pCP004067_00063 - 181 0.0076 16.2 0.0 1 2 0.00023 0.11 12.3 0.0 1 79 3 84 3 111 0.64 Adenylylsulphate kinase APS_kinase PF01583.20 158 pCP004067_00063 - 181 0.0076 16.2 0.0 2 2 0.37 1.8e+02 1.9 0.0 44 74 118 148 98 155 0.85 Adenylylsulphate kinase AAA_30 PF13604.6 192 pCP004067_00063 - 181 0.0092 15.7 0.1 1 1 3.2e-05 0.016 15.0 0.1 17 40 3 26 1 39 0.82 AAA domain AAA_24 PF13479.6 197 pCP004067_00063 - 181 0.0096 15.7 0.3 1 1 2e-05 0.0097 15.6 0.3 3 23 5 30 3 171 0.85 AAA domain Ploopntkinase1 PF18748.1 196 pCP004067_00063 - 181 0.0099 15.4 0.0 1 2 0.087 42 3.6 0.0 16 41 3 28 1 41 0.82 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 pCP004067_00063 - 181 0.0099 15.4 0.0 2 2 0.00091 0.44 10.0 0.0 93 164 72 143 54 154 0.81 P-loop Nucleotide Kinase1 T2SSE PF00437.20 273 pCP004067_00063 - 181 0.011 14.8 0.0 1 1 3.4e-05 0.016 14.3 0.0 130 158 5 33 1 75 0.82 Type II/IV secretion system protein ATPase PF06745.13 231 pCP004067_00063 - 181 0.011 15.1 1.2 1 2 3.6e-05 0.017 14.5 0.1 18 37 3 22 1 35 0.87 KaiC ATPase PF06745.13 231 pCP004067_00063 - 181 0.011 15.1 1.2 2 2 2.3 1.1e+03 -1.3 0.1 98 129 123 159 100 175 0.49 KaiC Rad17 PF03215.15 186 pCP004067_00063 - 181 0.012 15.5 0.0 1 2 8.1e-05 0.039 13.9 0.0 45 71 4 30 1 40 0.88 Rad17 P-loop domain Rad17 PF03215.15 186 pCP004067_00063 - 181 0.012 15.5 0.0 2 2 3.2 1.5e+03 -1.1 0.0 113 146 110 145 96 169 0.62 Rad17 P-loop domain SRP54 PF00448.22 196 pCP004067_00063 - 181 0.016 14.8 0.1 1 1 6.3e-05 0.031 13.9 0.1 3 40 6 42 4 49 0.84 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 168 pCP004067_00063 - 181 0.021 14.7 1.0 1 2 0.0001 0.049 13.5 0.3 2 22 7 27 6 35 0.85 NTPase NTPase_1 PF03266.15 168 pCP004067_00063 - 181 0.021 14.7 1.0 2 2 2.1 1e+03 -0.5 0.0 115 136 97 118 58 172 0.59 NTPase dNK PF01712.19 204 pCP004067_00063 - 181 0.034 14.0 0.2 1 2 0.0019 0.94 9.3 0.0 1 52 7 75 7 77 0.66 Deoxynucleoside kinase dNK PF01712.19 204 pCP004067_00063 - 181 0.034 14.0 0.2 2 2 0.19 94 2.8 0.2 118 162 102 143 92 175 0.70 Deoxynucleoside kinase Sigma54_activat PF00158.26 168 pCP004067_00063 - 181 0.035 13.8 0.0 1 1 0.00014 0.066 12.9 0.0 25 68 7 57 1 89 0.76 Sigma-54 interaction domain TIP49 PF06068.13 351 pCP004067_00063 - 181 0.035 13.3 0.2 1 2 0.00023 0.11 11.6 0.0 50 77 4 31 1 46 0.84 TIP49 P-loop domain TIP49 PF06068.13 351 pCP004067_00063 - 181 0.035 13.3 0.2 2 2 1.4 7e+02 -0.8 0.1 148 178 126 156 105 172 0.75 TIP49 P-loop domain ATPase_2 PF01637.18 233 pCP004067_00063 - 181 0.039 13.8 0.3 1 2 0.0045 2.2 8.2 0.0 19 49 3 32 1 50 0.75 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pCP004067_00063 - 181 0.039 13.8 0.3 2 2 0.085 41 4.0 0.1 48 97 102 150 92 179 0.53 ATPase domain predominantly from Archaea DnaB_C PF03796.15 255 pCP004067_00063 - 181 0.06 12.7 0.4 1 2 0.00026 0.13 11.6 0.0 17 47 2 32 1 42 0.83 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP004067_00063 - 181 0.06 12.7 0.4 2 2 2.6 1.3e+03 -1.5 0.1 84 91 136 143 98 179 0.39 DnaB-like helicase C terminal domain MKT1_N PF12247.8 90 pCP004067_00063 - 181 0.069 13.5 0.0 1 1 0.00057 0.28 11.6 0.0 14 51 39 74 36 147 0.88 Temperature dependent protein affecting M2 dsRNA replication AAA_11 PF13086.6 261 pCP004067_00063 - 181 0.073 12.8 1.5 1 1 0.00025 0.12 12.1 1.5 16 42 3 29 1 179 0.85 AAA domain PhoH PF02562.16 205 pCP004067_00063 - 181 0.076 12.5 0.1 1 1 0.0003 0.14 11.5 0.1 18 49 3 34 1 36 0.84 PhoH-like protein RNA_helicase PF00910.22 107 pCP004067_00063 - 181 0.089 13.2 0.0 1 1 0.00032 0.16 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase NACHT PF05729.12 166 pCP004067_00063 - 181 0.1 12.5 0.0 1 1 0.00036 0.17 11.8 0.0 1 40 5 45 5 73 0.78 NACHT domain ATP-synt_ab PF00006.25 213 pCP004067_00063 - 181 0.14 11.8 0.0 1 1 0.00028 0.14 11.8 0.0 13 45 3 34 1 178 0.82 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 181 pCP004067_00063 - 181 0.18 11.3 0.7 1 2 0.00058 0.28 10.7 0.1 31 63 2 34 1 46 0.80 P-loop containing dynein motor region AAA_7 PF12775.7 181 pCP004067_00063 - 181 0.18 11.3 0.7 2 2 8.9 4.3e+03 -3.0 0.0 65 82 156 173 132 176 0.64 P-loop containing dynein motor region Cytidylate_kin2 PF13189.6 179 pCP004067_00063 - 181 0.2 11.8 1.5 1 2 0.038 19 5.4 0.1 1 23 6 28 6 36 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 pCP004067_00063 - 181 0.2 11.8 1.5 2 2 0.026 12 5.9 0.1 108 147 99 138 28 143 0.73 Cytidylate kinase-like family APH PF01636.23 240 pCP004067_00064 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pCP004067_00064 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pCP004067_00064 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pCP004067_00064 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pCP004067_00064 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pCP004067_00064 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 pCP004067_00065 - 139 2.2e-51 174.9 0.1 1 1 1.4e-55 2.4e-51 174.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase Adenyl_transf PF04439.12 279 pCP004067_00066 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 pCP004067_00067 - 180 3.8e-20 72.3 0.1 1 1 2.3e-23 5.3e-20 71.8 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 pCP004067_00067 - 180 1.2e-13 51.2 0.1 1 1 9.1e-17 2e-13 50.5 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 pCP004067_00067 - 180 2.7e-12 46.7 0.0 1 1 1.6e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 pCP004067_00067 - 180 1.1e-09 38.6 1.1 1 1 6e-13 1.3e-09 38.3 1.1 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 pCP004067_00067 - 180 0.0011 19.7 0.0 1 1 6.1e-07 0.0014 19.4 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 pCP004067_00067 - 180 0.0011 19.0 0.0 1 1 1.2e-06 0.0027 17.8 0.0 6 58 79 130 73 132 0.85 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 pCP004067_00067 - 180 0.015 15.4 0.0 1 1 2.6e-05 0.059 13.5 0.0 21 126 50 154 43 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 pCP004067_00067 - 180 0.038 14.0 0.0 1 1 2.9e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein APH PF01636.23 240 pCP004067_00068 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pCP004067_00068 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pCP004067_00068 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pCP004067_00068 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family zf-HC2 PF13490.6 35 pCP004067_00069 - 221 3.2e-06 27.3 2.7 1 1 1.2e-09 6.9e-06 26.2 2.7 4 35 11 42 9 42 0.97 Putative zinc-finger Glyco_hydro_100 PF12899.7 435 pCP004067_00069 - 221 0.11 11.1 0.0 1 2 5.6e-05 0.34 9.5 0.0 29 75 3 50 1 72 0.86 Alkaline and neutral invertase Glyco_hydro_100 PF12899.7 435 pCP004067_00069 - 221 0.11 11.1 0.0 2 2 0.094 5.6e+02 -1.1 0.0 265 319 107 163 99 169 0.82 Alkaline and neutral invertase TetR_C_11 PF16859.5 113 pCP004067_00069 - 221 0.15 12.4 0.7 1 1 3.5e-05 0.21 11.9 0.7 12 111 12 110 11 112 0.88 Tetracyclin repressor-like, C-terminal domain Sigma70_r4_2 PF08281.12 54 pCP004067_00070 - 150 2.5e-07 30.3 0.0 1 1 6.3e-11 3.8e-07 29.7 0.0 1 54 87 140 87 140 0.97 Sigma-70, region 4 Sigma70_r4 PF04545.16 50 pCP004067_00070 - 150 3.8e-06 26.3 0.0 1 1 1.1e-09 6.3e-06 25.6 0.0 1 48 93 140 93 142 0.93 Sigma-70, region 4 HTH_38 PF13936.6 44 pCP004067_00070 - 150 0.021 14.6 0.0 1 1 6.9e-06 0.041 13.6 0.0 3 33 95 125 93 126 0.92 Helix-turn-helix domain W2 PF02020.18 79 pCP007180_00001 - 430 0.049 13.8 0.0 1 1 7.6e-06 0.14 12.3 0.0 38 77 344 404 341 406 0.86 eIF4-gamma/eIF5/eIF2-epsilon Lip_prot_lig_C PF10437.9 85 pCP007180_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCP007180_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pCP007180_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP007180_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pCP007180_00003 - 87 0.0072 15.7 2.9 1 2 0.55 9.8e+03 -3.9 0.1 30 45 5 9 2 10 0.51 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCP007180_00003 - 87 0.0072 15.7 2.9 2 2 4e-07 0.0072 15.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Y1_Tnp PF01797.16 121 pCP007180_00004 - 142 4e-36 123.8 1.9 1 1 7.8e-40 4.7e-36 123.6 1.9 2 121 19 141 18 141 0.97 Transposase IS200 like Symplekin_C PF12295.8 186 pCP007180_00004 - 142 0.042 14.0 0.2 1 1 8.2e-06 0.049 13.7 0.2 76 162 43 128 7 138 0.75 Symplekin tight junction protein C terminal DUF4974 PF16344.5 70 pCP007180_00004 - 142 0.47 10.5 3.6 1 2 1.7 1e+04 -3.4 0.1 32 44 4 16 3 18 0.74 Domain of unknown function (DUF4974) DUF4974 PF16344.5 70 pCP007180_00004 - 142 0.47 10.5 3.6 2 2 2.6e-05 0.16 12.0 1.0 6 67 41 101 39 104 0.90 Domain of unknown function (DUF4974) OrfB_Zn_ribbon PF07282.11 69 pCP007180_00005 - 399 3.2e-21 75.0 0.5 1 1 3.1e-24 6.9e-21 73.9 0.5 1 68 287 356 287 357 0.97 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 47 pCP007180_00005 - 399 2.4e-20 71.7 1.5 1 1 2.2e-23 4.8e-20 70.8 1.5 1 45 1 44 1 46 0.96 Helix-turn-helix domain OrfB_IS605 PF01385.19 120 pCP007180_00005 - 399 7.6e-20 71.3 2.2 1 1 8.5e-23 1.9e-19 70.0 2.2 4 117 162 273 159 276 0.93 Probable transposase HypA PF01155.19 112 pCP007180_00005 - 399 0.19 11.7 0.7 1 1 0.00019 0.42 10.6 0.7 66 96 311 344 211 355 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ACC PF17848.1 26 pCP007180_00005 - 399 0.32 11.1 1.5 1 1 0.00057 1.3 9.2 1.5 4 26 318 340 318 340 0.99 Acetyl-coA carboxylase zinc finger domain zf-ribbon_3 PF13248.6 26 pCP007180_00005 - 399 2.3 7.7 5.7 1 3 0.0086 19 4.8 0.3 16 23 315 322 313 325 0.67 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP007180_00005 - 399 2.3 7.7 5.7 2 3 0.0074 16 5.0 0.1 4 10 336 342 333 348 0.80 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP007180_00005 - 399 2.3 7.7 5.7 3 3 3.1 6.9e+03 -3.3 0.1 7 10 387 390 386 391 0.54 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 pCP007180_00005 - 399 3.9 7.5 5.0 1 2 0.0014 3.2 7.8 2.0 14 44 311 341 308 343 0.81 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 pCP007180_00005 - 399 3.9 7.5 5.0 2 2 0.036 81 3.3 1.6 19 32 335 348 326 391 0.77 Transposase zinc-ribbon domain Ima1_N PF09779.9 135 pCP007180_00005 - 399 5 8.0 7.5 1 3 0.36 8e+02 0.9 0.7 66 118 54 100 29 112 0.58 Ima1 N-terminal domain Ima1_N PF09779.9 135 pCP007180_00005 - 399 5 8.0 7.5 2 3 0.93 2.1e+03 -0.5 0.1 65 95 113 156 84 168 0.54 Ima1 N-terminal domain Ima1_N PF09779.9 135 pCP007180_00005 - 399 5 8.0 7.5 3 3 0.00076 1.7 9.5 0.7 3 38 318 353 317 383 0.86 Ima1 N-terminal domain LysE PF01810.18 193 pCP007180_00006 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP007180_00006 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP007180_00006 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 pCP007180_00006 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 pCP007180_00006 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 pCP007180_00006 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 pCP007180_00006 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 pCP007180_00006 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP007180_00006 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP007180_00006 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP007180_00006 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 pCP007180_00006 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 pCP007180_00007 - 49 0.0042 16.6 1.2 1 1 3.3e-07 0.0059 16.1 1.2 9 32 17 40 15 41 0.89 Protein of unknown function (DUF4044) NPA PF16469.5 123 pCP007180_00008 - 91 0.057 14.0 6.1 1 1 3.3e-06 0.06 13.9 6.1 17 103 3 89 1 91 0.87 Nematode polyprotein allergen ABA-1 Papo_T_antigen PF02380.15 93 pCP007180_00009 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP007180_00009 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pCP007180_00010 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP007180_00010 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP007180_00010 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP007180_00010 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP007180_00010 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP007180_00010 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pCP007180_00011 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pCP007180_00012 - 1931 1.7e-16 59.9 1.2 1 3 1.1e-19 4e-16 58.7 0.1 56 245 1016 1272 934 1313 0.73 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP007180_00012 - 1931 1.7e-16 59.9 1.2 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP007180_00012 - 1931 1.7e-16 59.9 1.2 3 3 1.2 4.4e+03 -3.9 0.0 173 197 1879 1904 1860 1921 0.71 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP007180_00012 - 1931 7.5e-08 32.6 8.9 1 3 2.3 8.1e+03 -3.3 0.2 54 75 648 691 638 783 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP007180_00012 - 1931 7.5e-08 32.6 8.9 2 3 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP007180_00012 - 1931 7.5e-08 32.6 8.9 3 3 0.41 1.5e+03 -0.9 5.7 35 121 1799 1903 1746 1930 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP007180_00012 - 1931 9.6e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP007180_00012 - 1931 9.6e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP007180_00012 - 1931 6.3e-06 26.1 1.8 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP007180_00012 - 1931 6.3e-06 26.1 1.8 2 2 0.086 3.1e+02 1.0 0.0 119 155 1882 1923 1826 1929 0.76 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP007180_00012 - 1931 1.5e-05 25.5 0.7 1 2 4.3e-08 0.00015 22.2 0.2 3 103 371 471 369 474 0.79 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP007180_00012 - 1931 1.5e-05 25.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 660 699 644 718 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 pCP007180_00013 - 226 1.1e-09 38.9 1.0 1 1 2.6e-13 4.7e-09 36.9 1.0 49 120 123 195 4 216 0.83 NYN domain HTH_19 PF12844.7 65 pCP007180_00014 - 314 7.3e-06 25.9 0.1 1 2 0.0025 4.5 7.4 0.0 11 31 9 29 1 41 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 pCP007180_00014 - 314 7.3e-06 25.9 0.1 2 2 6.7e-06 0.012 15.6 0.0 28 64 117 152 98 153 0.91 Helix-turn-helix domain HTH_3 PF01381.22 55 pCP007180_00014 - 314 7.9e-06 25.8 0.0 1 2 3.2e-07 0.00057 19.9 0.0 2 29 3 30 2 30 0.89 Helix-turn-helix HTH_3 PF01381.22 55 pCP007180_00014 - 314 7.9e-06 25.8 0.0 2 2 0.041 74 3.5 0.0 26 55 118 147 109 147 0.90 Helix-turn-helix Phage_CI_repr PF07022.13 65 pCP007180_00014 - 314 0.00077 19.5 0.0 1 2 2.5e-05 0.045 13.8 0.0 5 49 4 47 1 53 0.78 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP007180_00014 - 314 0.00077 19.5 0.0 2 2 0.056 1e+02 3.1 0.0 45 64 135 154 127 155 0.78 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 pCP007180_00014 - 314 0.0073 15.8 0.0 1 2 5.5e-05 0.099 12.2 0.0 17 34 10 27 10 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP007180_00014 - 314 0.0073 15.8 0.0 2 2 0.21 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 pCP007180_00014 - 314 0.0088 16.1 0.0 1 2 1.7e-05 0.03 14.5 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain HTH_28 PF13518.6 52 pCP007180_00014 - 314 0.0088 16.1 0.0 2 2 3.4 6.2e+03 -2.6 0.0 6 21 44 59 42 67 0.63 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 pCP007180_00014 - 314 0.01 15.7 0.2 1 2 1.6e-05 0.028 14.3 0.0 2 36 3 37 2 49 0.79 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 pCP007180_00014 - 314 0.01 15.7 0.2 2 2 3.5 6.2e+03 -2.8 0.1 38 47 290 299 289 300 0.85 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 pCP007180_00014 - 314 0.017 14.9 0.0 1 2 2.7e-05 0.049 13.4 0.0 16 37 7 30 1 36 0.87 Homeodomain-like domain HTH_23 PF13384.6 50 pCP007180_00014 - 314 0.017 14.9 0.0 2 2 2.6 4.7e+03 -2.4 0.0 35 49 54 67 53 67 0.81 Homeodomain-like domain Sigma70_r4_2 PF08281.12 54 pCP007180_00014 - 314 0.026 14.2 0.0 1 1 3.1e-05 0.055 13.1 0.0 25 46 9 30 6 30 0.93 Sigma-70, region 4 HTH_31 PF13560.6 64 pCP007180_00014 - 314 0.064 13.6 0.0 1 1 6.8e-05 0.12 12.7 0.0 13 33 9 29 3 38 0.89 Helix-turn-helix domain CENP-B_N PF04218.13 53 pCP007180_00014 - 314 0.073 12.7 0.0 1 2 0.00019 0.35 10.5 0.0 22 44 10 32 8 35 0.92 CENP-B N-terminal DNA-binding domain CENP-B_N PF04218.13 53 pCP007180_00014 - 314 0.073 12.7 0.0 2 2 2 3.6e+03 -2.3 0.0 32 41 293 302 290 303 0.82 CENP-B N-terminal DNA-binding domain Relaxase PF03432.14 242 pCP007180_00015 - 462 4.1e-10 39.7 7.6 1 2 2.3e-14 4.1e-10 39.7 7.6 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP007180_00015 - 462 4.1e-10 39.7 7.6 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pCP007180_00016 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP007180_00016 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP007180_00016 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP007180_00016 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP007180_00016 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP007180_00016 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP007180_00016 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pCP007180_00016 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP007180_00016 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 pCP007180_00016 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP007180_00016 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain Sds3 PF08598.11 218 pCP007180_00017 - 93 0.027 14.5 5.8 1 1 7.1e-06 0.032 14.3 5.8 45 97 7 62 5 88 0.83 Sds3-like CdvA PF18822.1 123 pCP007180_00017 - 93 0.21 11.4 8.2 1 2 5.2e-05 0.23 11.3 5.3 18 48 6 36 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP007180_00017 - 93 0.21 11.4 8.2 2 2 0.071 3.2e+02 1.1 0.0 97 112 60 75 45 89 0.67 CdvA-like coiled-coil domain DUF3671 PF12420.8 115 pCP007180_00017 - 93 4.6 7.3 14.1 1 2 0.029 1.3e+02 2.7 3.9 24 49 17 42 1 46 0.70 Protein of unknown function DUF3671 PF12420.8 115 pCP007180_00017 - 93 4.6 7.3 14.1 2 2 9.4e-05 0.42 10.7 2.6 4 32 59 85 56 93 0.81 Protein of unknown function CdiI PF07262.11 156 pCP007180_00017 - 93 8.8 6.1 12.2 1 1 0.0035 16 5.3 12.2 49 101 17 77 1 89 0.74 CDI immunity protein DUF2400 PF09674.10 227 pCP007180_00019 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pCP007180_00019 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pCP007180_00020 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pCP007180_00020 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pCP007180_00020 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pCP007180_00020 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP007180_00020 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pCP007180_00021 - 48 0.0028 17.6 0.0 1 1 1.6e-07 0.0028 17.6 0.0 1 22 1 23 1 38 0.88 Protein of unknown function (DUF4223) Sdh_cyt PF01127.22 121 pCP007180_00022 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 pCP007180_00022 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 pCP007180_00022 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pCP007180_00024 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pCP007180_00025 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pCP007180_00026 - 597 5.4e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP007180_00026 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP007180_00026 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP007180_00026 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP007180_00026 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pCP007180_00026 - 597 0.0088 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 pCP007180_00026 - 597 0.0088 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pCP007180_00026 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP007180_00026 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pCP007180_00026 - 597 0.21 11.7 2.2 1 1 0.00042 1.1 9.4 2.2 1 29 35 63 35 536 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pCP007180_00026 - 597 0.37 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP007180_00026 - 597 0.37 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP007180_00026 - 597 0.37 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 pCP007180_00027 - 339 1.3e-33 116.2 0.8 1 1 7.4e-37 2.2e-33 115.4 0.8 2 146 138 280 137 280 0.96 Resolvase, N terminal domain CRISPR_Cas2 PF09827.9 76 pCP007180_00027 - 339 0.0016 18.5 0.0 1 1 5.5e-06 0.016 15.3 0.0 5 54 8 68 5 82 0.78 CRISPR associated protein Cas2 PAS_11 PF14598.6 113 pCP007180_00027 - 339 0.0032 17.6 1.2 1 2 7.7e-06 0.023 14.8 0.4 28 110 88 170 79 171 0.89 PAS domain PAS_11 PF14598.6 113 pCP007180_00027 - 339 0.0032 17.6 1.2 2 2 0.2 5.9e+02 0.6 0.0 28 48 300 320 292 328 0.81 PAS domain Occludin_ELL PF07303.13 101 pCP007180_00027 - 339 0.12 13.1 9.1 1 2 2.7 8.1e+03 -2.4 0.0 47 47 51 51 14 81 0.54 Occludin homology domain Occludin_ELL PF07303.13 101 pCP007180_00027 - 339 0.12 13.1 9.1 2 2 1.4e-05 0.043 14.5 6.0 4 90 100 195 98 197 0.91 Occludin homology domain HTH_38 PF13936.6 44 pCP007180_00027 - 339 0.2 11.5 1.5 1 3 4.3 1.3e+04 -3.9 0.1 8 19 182 193 182 196 0.76 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP007180_00027 - 339 0.2 11.5 1.5 2 3 0.0073 22 4.9 0.0 3 35 253 286 252 289 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP007180_00027 - 339 0.2 11.5 1.5 3 3 0.01 31 4.5 0.0 11 26 297 312 293 315 0.88 Helix-turn-helix domain Pox_A_type_inc PF04508.12 23 pCP007180_00027 - 339 6.5 6.8 6.9 1 2 2.1 6.4e+03 -2.7 0.2 1 12 148 159 148 159 0.75 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP007180_00027 - 339 6.5 6.8 6.9 2 2 0.00032 0.97 9.4 2.1 4 17 181 194 181 196 0.92 Viral A-type inclusion protein repeat TrbC PF04956.13 99 pCP007180_00029 - 87 1.5e-14 54.0 8.5 1 1 1.7e-18 1.6e-14 53.9 8.5 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP007180_00029 - 87 0.056 13.3 4.3 1 1 8.2e-06 0.073 12.9 4.2 76 135 35 87 12 87 0.71 Uncharacterized protein conserved in bacteria (DUF2062) VirB3 PF05101.13 84 pCP007180_00030 - 53 2e-13 50.4 1.9 1 1 1.2e-17 2.1e-13 50.3 1.9 2 51 3 52 2 53 0.94 Type IV secretory pathway, VirB3-like protein CagE_TrbE_VirB PF03135.14 206 pCP007180_00031 - 869 3.7e-51 174.2 0.6 1 1 9.3e-55 8.4e-51 173.0 0.6 2 206 224 429 223 429 0.98 CagE, TrbE, VirB family, component of type IV transporter system HNOBA PF07701.14 221 pCP007180_00031 - 869 0.039 13.4 0.1 1 1 9.5e-06 0.085 12.3 0.1 53 153 571 791 569 802 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pCP007180_00032 - 185 3.1e-31 107.8 0.1 1 1 2.8e-35 5e-31 107.1 0.1 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) FapA PF03961.13 454 pCP007180_00033 - 226 0.0039 15.9 6.9 1 1 1.3e-06 0.0039 15.9 6.9 332 412 3 89 1 140 0.82 Flagellar Assembly Protein A Ax_dynein_light PF10211.9 187 pCP007180_00033 - 226 0.028 14.3 4.0 1 2 9.5e-06 0.028 14.3 4.0 121 182 3 64 1 69 0.87 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP007180_00033 - 226 0.028 14.3 4.0 2 2 0.26 7.8e+02 -0.1 1.0 116 116 194 194 128 226 0.55 Axonemal dynein light chain Fib_alpha PF08702.10 143 pCP007180_00033 - 226 0.6 10.3 12.2 1 3 2e-05 0.061 13.5 4.9 30 97 3 67 1 87 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP007180_00033 - 226 0.6 10.3 12.2 2 3 0.84 2.5e+03 -1.4 0.0 82 121 109 149 79 160 0.62 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP007180_00033 - 226 0.6 10.3 12.2 3 3 0.2 6.1e+02 0.5 0.2 34 56 196 218 178 225 0.65 Fibrinogen alpha/beta chain family DivIC PF04977.15 80 pCP007180_00033 - 226 1.7 8.4 11.6 1 3 0.00031 0.92 9.3 2.0 21 52 5 36 2 48 0.84 Septum formation initiator DivIC PF04977.15 80 pCP007180_00033 - 226 1.7 8.4 11.6 2 3 0.011 32 4.4 0.1 35 65 55 85 40 86 0.82 Septum formation initiator DivIC PF04977.15 80 pCP007180_00033 - 226 1.7 8.4 11.6 3 3 0.47 1.4e+03 -0.9 0.5 21 41 194 214 188 223 0.73 Septum formation initiator Striatin PF08232.12 155 pCP007180_00033 - 226 4.6 7.8 9.6 1 1 0.0047 14 6.2 9.6 29 88 5 69 3 225 0.72 Striatin family Syntaxin-6_N PF09177.11 99 pCP007180_00033 - 226 9.3 6.9 10.2 1 2 0.00059 1.8 9.2 4.5 44 70 4 46 2 87 0.71 Syntaxin 6, N-terminal Syntaxin-6_N PF09177.11 99 pCP007180_00033 - 226 9.3 6.9 10.2 2 2 0.58 1.7e+03 -0.4 0.3 47 47 196 196 140 225 0.54 Syntaxin 6, N-terminal SSB PF00436.25 104 pCP007180_00035 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pCP007180_00036 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP007180_00036 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP007180_00036 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP007180_00036 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP007180_00036 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP007180_00036 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP007180_00036 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pCP007180_00037 - 218 3.9e-12 47.0 0.4 1 1 5.4e-16 4.8e-12 46.7 0.4 1 104 94 210 94 218 0.84 Type IV secretion system proteins GldM_N PF12081.8 194 pCP007180_00037 - 218 0.033 14.3 0.5 1 1 6.1e-06 0.054 13.6 0.5 32 83 104 157 100 201 0.87 GldM N-terminal domain T4SS PF07996.11 197 pCP007180_00038 - 104 3.3e-10 40.7 11.1 1 1 1.3e-13 3.8e-10 40.5 11.1 120 194 6 80 1 82 0.94 Type IV secretion system proteins AATF-Che1 PF13339.6 139 pCP007180_00038 - 104 0.0044 17.7 2.4 1 1 1.7e-06 0.0052 17.5 2.4 52 119 10 91 2 100 0.73 Apoptosis antagonizing transcription factor DHR10 PF18595.1 117 pCP007180_00038 - 104 0.023 14.7 5.2 1 1 1.1e-05 0.031 14.3 5.2 36 104 14 81 6 88 0.86 Designed helical repeat protein 10 domain Occludin_ELL PF07303.13 101 pCP007180_00038 - 104 0.032 14.9 0.6 1 2 1.1e-05 0.032 14.9 0.6 17 71 6 59 4 70 0.85 Occludin homology domain Occludin_ELL PF07303.13 101 pCP007180_00038 - 104 0.032 14.9 0.6 2 2 0.16 4.7e+02 1.6 0.2 3 20 76 93 74 94 0.87 Occludin homology domain VWA_2 PF13519.6 107 pCP007180_00038 - 104 0.067 13.8 1.1 1 1 3.4e-05 0.1 13.3 0.8 41 84 2 52 1 77 0.86 von Willebrand factor type A domain Snapin_Pallidin PF14712.6 90 pCP007180_00038 - 104 0.1 13.0 5.1 1 1 9.4e-05 0.28 11.6 5.1 30 83 21 75 8 82 0.88 Snapin/Pallidin TrbL PF04610.14 215 pCP007180_00039 - 332 8.7e-32 110.6 33.1 1 2 9.7e-36 8.7e-32 110.6 33.1 1 214 40 252 40 253 0.94 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP007180_00039 - 332 8.7e-32 110.6 33.1 2 2 0.5 4.5e+03 -2.8 0.1 84 84 290 290 260 328 0.50 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP007180_00039 - 332 0.029 14.2 1.4 1 2 0.33 2.9e+03 -1.9 0.1 39 50 71 82 62 110 0.55 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP007180_00039 - 332 0.029 14.2 1.4 2 2 6.2e-06 0.055 13.3 0.1 14 81 222 288 201 300 0.67 T-cell leukemia translocation-altered Trep_dent_lipo PF09710.10 397 pCP007180_00040 - 54 0.034 13.1 1.0 1 1 5.2e-06 0.031 13.2 1.0 3 25 3 24 1 53 0.80 Treponema clustered lipoprotein (Trep_dent_lipo) La_HTH_kDCL PF18177.1 90 pCP007180_00040 - 54 0.19 12.0 0.0 1 1 3.6e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain PsbT PF01405.17 29 pCP007180_00040 - 54 1.1 9.1 5.2 1 1 0.00027 1.6 8.6 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pCP007180_00041 - 219 1.6e-52 178.5 0.5 1 1 1.9e-56 1.7e-52 178.4 0.5 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pCP007180_00041 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pCP007180_00042 - 296 4.2e-56 190.0 1.7 1 1 1.1e-59 6.7e-56 189.3 1.7 2 211 31 271 30 271 0.92 Conjugal transfer protein TraE PF05309.11 182 pCP007180_00042 - 296 0.022 14.2 0.1 1 1 6.6e-06 0.039 13.3 0.1 107 171 89 154 86 161 0.83 TraE protein Rho_RNA_bind PF07497.12 73 pCP007180_00042 - 296 0.068 13.0 0.0 1 2 1.5 9.2e+03 -3.4 0.0 9 22 79 92 76 97 0.79 Rho termination factor, RNA-binding domain Rho_RNA_bind PF07497.12 73 pCP007180_00042 - 296 0.068 13.0 0.0 2 2 3.3e-05 0.2 11.6 0.0 21 49 241 269 232 288 0.84 Rho termination factor, RNA-binding domain TrbI PF03743.14 187 pCP007180_00043 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.4e+03 -3.4 0.3 136 154 140 166 120 172 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pCP007180_00043 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP007180_00043 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease T2SSE PF00437.20 273 pCP007180_00044 - 335 1.5e-54 184.9 0.0 1 1 3.1e-57 1.7e-54 184.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP007180_00044 - 335 7e-05 23.4 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP007180_00044 - 335 0.00011 21.6 0.0 1 1 3.1e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP007180_00044 - 335 0.00029 20.4 0.0 1 1 9.1e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP007180_00044 - 335 0.0014 18.9 0.0 1 1 4.6e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 pCP007180_00044 - 335 0.0014 18.4 0.0 1 1 4e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pCP007180_00044 - 335 0.0025 17.6 0.0 1 1 9.5e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pCP007180_00044 - 335 0.0035 17.3 0.0 1 1 1.3e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP007180_00044 - 335 0.0055 15.7 0.0 1 1 1.4e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP007180_00044 - 335 0.0073 16.2 0.0 1 1 2.2e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP007180_00044 - 335 0.0087 15.4 0.0 1 1 2.5e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP007180_00044 - 335 0.0092 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pCP007180_00044 - 335 0.019 15.1 0.0 1 1 6.3e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 pCP007180_00044 - 335 0.021 13.8 0.0 1 1 6.1e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 pCP007180_00044 - 335 0.022 14.8 0.1 1 1 9.7e-05 0.054 13.5 0.0 5 50 147 186 135 244 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 pCP007180_00044 - 335 0.024 14.4 0.0 1 1 9e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 pCP007180_00044 - 335 0.026 14.2 0.0 1 1 9.6e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pCP007180_00044 - 335 0.037 13.5 0.0 1 1 0.00011 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 pCP007180_00044 - 335 0.039 14.0 0.1 1 1 0.00019 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 pCP007180_00044 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP007180_00044 - 335 0.046 13.0 0.0 1 1 0.00014 0.08 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin RNA_helicase PF00910.22 107 pCP007180_00044 - 335 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase PRK PF00485.18 197 pCP007180_00044 - 335 0.056 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP007180_00044 - 335 0.066 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP007180_00044 - 335 0.074 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pCP007180_00044 - 335 0.088 12.7 0.0 1 1 0.00035 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pCP007180_00044 - 335 0.097 12.6 0.5 1 1 0.00043 0.24 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 pCP007180_00044 - 335 0.11 12.4 0.1 1 1 0.00041 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 pCP007180_00044 - 335 0.13 12.8 0.1 1 1 0.00069 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 pCP007180_00044 - 335 0.15 11.7 0.0 1 1 0.00042 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP007180_00044 - 335 0.15 11.8 0.0 1 1 0.00043 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pCP007180_00044 - 335 0.35 11.3 3.8 1 2 2.6 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 pCP007180_00044 - 335 0.35 11.3 3.8 2 2 0.00066 0.37 11.3 1.3 22 37 163 178 160 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pCP007180_00045 - 603 1e-105 354.3 0.1 1 1 3.1e-109 1.4e-105 353.8 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP007180_00045 - 603 1.1e-24 86.8 0.0 1 1 4.9e-28 2.2e-24 85.8 0.0 2 125 406 528 405 529 0.88 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP007180_00045 - 603 6.5e-16 58.2 0.0 1 2 1.6e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP007180_00045 - 603 6.5e-16 58.2 0.0 2 2 2.7e-14 1.2e-10 40.9 0.0 187 370 347 532 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 pCP007180_00045 - 603 0.2 11.7 0.2 1 1 7.7e-05 0.34 10.9 0.2 37 93 9 87 3 100 0.78 Putative Actinobacterial Holin-X, holin superfamily III Cag12 PF13117.6 97 pCP007180_00046 - 143 2.9e-16 59.8 0.3 1 1 4.1e-20 3.7e-16 59.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pCP007180_00046 - 143 0.078 12.8 0.4 1 1 2.3e-05 0.2 11.4 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 pCP007180_00047 - 183 1.1e-36 126.1 1.8 1 1 7.5e-41 1.3e-36 125.8 1.8 1 136 25 170 25 181 0.89 TrbM PRELI PF04707.14 157 pCP007180_00048 - 266 0.03 14.1 2.2 1 2 0.49 1.8e+03 -1.4 0.1 122 129 35 42 4 73 0.51 PRELI-like family PRELI PF04707.14 157 pCP007180_00048 - 266 0.03 14.1 2.2 2 2 9.1e-06 0.033 14.0 0.3 96 155 84 148 79 150 0.87 PRELI-like family TACC_C PF05010.14 201 pCP007180_00048 - 266 2.4 7.9 10.1 1 2 0.0014 5 6.9 8.4 13 125 2 113 1 138 0.78 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 pCP007180_00048 - 266 2.4 7.9 10.1 2 2 0.13 4.6e+02 0.5 3.0 8 45 101 140 90 181 0.55 Transforming acidic coiled-coil-containing protein (TACC), C-terminal NdhM PF10664.9 107 pCP007180_00048 - 266 2.5 8.4 6.1 1 3 0.016 57 4.0 0.3 43 88 5 50 1 61 0.75 Cyanobacterial and plastid NDH-1 subunit M NdhM PF10664.9 107 pCP007180_00048 - 266 2.5 8.4 6.1 2 3 0.023 82 3.5 0.8 32 78 91 136 88 152 0.77 Cyanobacterial and plastid NDH-1 subunit M NdhM PF10664.9 107 pCP007180_00048 - 266 2.5 8.4 6.1 3 3 0.033 1.2e+02 3.0 0.1 61 94 137 170 124 175 0.81 Cyanobacterial and plastid NDH-1 subunit M IFT20 PF14931.6 119 pCP007180_00048 - 266 4.8 7.4 10.0 1 3 0.15 5.2e+02 0.8 0.3 25 46 24 45 1 56 0.50 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 pCP007180_00048 - 266 4.8 7.4 10.0 2 3 0.00036 1.3 9.2 0.8 25 54 90 119 80 127 0.89 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 pCP007180_00048 - 266 4.8 7.4 10.0 3 3 0.04 1.4e+02 2.6 0.4 23 43 121 141 115 178 0.80 Intraflagellar transport complex B, subunit 20 Mod_r PF07200.13 146 pCP007180_00048 - 266 8.2 6.5 12.0 1 2 0.024 85 3.2 9.1 10 135 15 161 2 165 0.62 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 pCP007180_00048 - 266 8.2 6.5 12.0 2 2 0.47 1.7e+03 -1.0 0.0 65 88 207 230 204 259 0.71 Modifier of rudimentary (Mod(r)) protein CdhD PF03599.16 386 pCP007180_00049 - 246 0.002 16.9 0.0 1 1 5.3e-07 0.0031 16.3 0.0 269 358 39 127 30 136 0.86 CO dehydrogenase/acetyl-CoA synthase delta subunit Pox_RNA_pol PF03293.14 160 pCP007180_00049 - 246 0.012 15.3 0.9 1 1 4.5e-06 0.027 14.2 0.9 35 158 20 138 7 140 0.83 Poxvirus DNA-directed RNA polymerase, 18 kD subunit Redoxin PF08534.10 147 pCP007180_00049 - 246 0.059 13.1 0.5 1 2 0.079 4.7e+02 0.4 0.0 117 146 49 76 31 77 0.79 Redoxin Redoxin PF08534.10 147 pCP007180_00049 - 246 0.059 13.1 0.5 2 2 7.9e-05 0.47 10.2 0.1 49 76 184 213 178 230 0.79 Redoxin DUF1461 PF07314.11 189 pCP007180_00050 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) Topoisom_bac PF01131.20 413 pCP007180_00051 - 730 9e-97 324.7 8.0 1 1 1.2e-99 1.3e-96 324.2 8.0 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP007180_00051 - 730 9.7e-12 45.0 0.1 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP007180_00051 - 730 9.7e-12 45.0 0.1 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP007180_00051 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP007180_00051 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP007180_00051 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP007180_00051 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP007180_00051 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP007180_00051 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP007180_00051 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP007180_00051 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP007180_00051 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pCP007180_00051 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pCP007180_00051 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain EF-hand_8 PF13833.6 55 pCP007180_00051 - 730 0.052 13.4 0.2 1 2 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair EF-hand_8 PF13833.6 55 pCP007180_00051 - 730 0.052 13.4 0.2 2 2 1.7 1.8e+03 -1.2 0.0 24 36 342 354 332 355 0.83 EF-hand domain pair zf-C2H2_4 PF13894.6 24 pCP007180_00051 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP007180_00051 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP007180_00051 - 730 0.086 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP007180_00051 - 730 0.086 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 pCP007180_00051 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP007180_00051 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pCP007180_00051 - 730 0.38 11.0 3.0 1 3 1.9 2e+03 -1.0 0.0 26 47 362 383 354 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP007180_00051 - 730 0.38 11.0 3.0 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP007180_00051 - 730 0.38 11.0 3.0 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP007180_00051 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP007180_00051 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP007180_00051 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP007180_00051 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP007180_00051 - 730 0.76 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP007180_00051 - 730 0.76 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP007180_00051 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP007180_00051 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP007180_00051 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP007180_00051 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pCP007180_00053 - 404 3.9e-05 23.6 2.2 1 1 1.1e-08 0.0001 22.2 2.2 4 133 262 387 259 397 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP007180_00053 - 404 0.02 14.9 4.4 1 1 1.8e-05 0.16 11.9 4.4 37 125 242 375 142 383 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pCP007180_00055 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP007180_00055 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP007180_00055 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP007180_00055 - 639 1.2e-16 60.5 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP007180_00055 - 639 3e-12 46.4 0.1 1 1 3.5e-15 6.9e-12 45.3 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP007180_00055 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP007180_00055 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP007180_00055 - 639 0.019 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP007180_00055 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP007180_00055 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family W2 PF02020.18 79 pCP007182_00001 - 266 0.02 15.0 0.1 1 2 0.23 4.1e+03 -2.0 0.0 43 65 155 177 150 179 0.61 eIF4-gamma/eIF5/eIF2-epsilon W2 PF02020.18 79 pCP007182_00001 - 266 0.02 15.0 0.1 2 2 3.4e-06 0.061 13.5 0.0 38 77 180 240 176 242 0.86 eIF4-gamma/eIF5/eIF2-epsilon Lip_prot_lig_C PF10437.9 85 pCP007182_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCP007182_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pCP007182_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP007182_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain LysE PF01810.18 193 pCP007182_00003 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP007182_00003 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP007182_00003 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 pCP007182_00003 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 pCP007182_00003 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 pCP007182_00003 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 pCP007182_00003 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 pCP007182_00003 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP007182_00003 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP007182_00003 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP007182_00003 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 pCP007182_00003 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 pCP007182_00004 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP007182_00004 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP007182_00004 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP007182_00004 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP007182_00004 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP007182_00004 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pCP007182_00005 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP007182_00005 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pCP007182_00006 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP007182_00006 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP007182_00006 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP007182_00006 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP007182_00006 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP007182_00006 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase SNF2_N PF00176.23 350 pCP007182_00008 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP007182_00008 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP007182_00008 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP007182_00008 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP007182_00008 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP007182_00008 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP007182_00008 - 1932 9.9e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP007182_00008 - 1932 9.9e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP007182_00008 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP007182_00008 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP007182_00008 - 1932 2.9e-05 24.5 0.6 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP007182_00008 - 1932 2.9e-05 24.5 0.6 2 2 1.5 5.3e+03 -2.0 0.0 41 81 661 701 646 719 0.66 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 pCP007182_00009 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pCP007182_00009 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 pCP007182_00010 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP007182_00010 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pCP007182_00011 - 169 5.2e-05 23.2 6.1 1 3 4.6e-05 0.28 11.2 0.2 23 45 2 24 1 33 0.91 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP007182_00011 - 169 5.2e-05 23.2 6.1 2 3 0.21 1.3e+03 -0.5 0.0 21 36 63 78 56 96 0.84 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP007182_00011 - 169 5.2e-05 23.2 6.1 3 3 1.1e-05 0.063 13.3 1.0 15 62 93 142 77 147 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP007182_00011 - 169 0.036 14.2 2.3 1 1 7.7e-06 0.046 13.8 1.6 54 131 4 89 1 110 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP007182_00011 - 169 0.21 11.7 7.8 1 3 0.34 2e+03 -1.1 0.1 46 55 4 13 2 44 0.65 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP007182_00011 - 169 0.21 11.7 7.8 2 3 0.0034 20 5.3 0.7 10 46 41 77 39 83 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP007182_00011 - 169 0.21 11.7 7.8 3 3 0.00016 0.93 9.6 0.3 8 32 89 113 88 120 0.90 U3 small nucleolar RNA-associated protein 6 Imm41 PF15592.6 114 pCP007182_00012 - 68 0.031 14.6 2.2 1 1 1.9e-06 0.034 14.5 2.2 34 95 6 66 2 68 0.82 Immunity protein 41 DUF2400 PF09674.10 227 pCP007182_00014 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pCP007182_00014 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pCP007182_00015 - 408 1.9e-08 34.5 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pCP007182_00015 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pCP007182_00015 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pCP007182_00015 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP007182_00015 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pCP007182_00016 - 92 0.0072 16.3 0.0 1 1 7.4e-07 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) Sdh_cyt PF01127.22 121 pCP007182_00017 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 pCP007182_00017 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 pCP007182_00017 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pCP007182_00019 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pCP007182_00020 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pCP007182_00021 - 597 1.6e-14 54.0 0.0 1 1 1.3e-17 3.3e-14 52.9 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP007182_00021 - 597 0.00038 19.9 0.0 1 2 7.4e-07 0.0019 17.6 0.0 16 117 30 136 24 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP007182_00021 - 597 0.00038 19.9 0.0 2 2 0.017 44 3.3 0.0 122 183 113 176 96 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP007182_00021 - 597 0.0022 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP007182_00021 - 597 0.0022 17.7 0.0 2 2 0.5 1.3e+03 -1.0 0.0 99 118 111 130 102 168 0.67 IstB-like ATP binding protein AAA PF00004.29 132 pCP007182_00021 - 597 0.009 16.4 0.2 1 2 8.6e-05 0.22 11.9 0.0 2 105 37 166 36 176 0.67 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP007182_00021 - 597 0.009 16.4 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pCP007182_00021 - 597 0.0091 15.4 0.0 1 2 2.3e-05 0.058 12.7 0.0 16 70 30 83 23 120 0.90 KaiC ATPase PF06745.13 231 pCP007182_00021 - 597 0.0091 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC CbiA PF01656.23 128 pCP007182_00021 - 597 0.16 12.0 1.6 1 1 0.00029 0.74 9.9 1.6 1 29 35 63 35 536 0.91 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pCP007182_00021 - 597 0.37 10.8 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP007182_00021 - 597 0.37 10.8 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP007182_00021 - 597 0.37 10.8 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 pCP007182_00022 - 204 1.6e-33 115.9 0.7 1 1 4.7e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP007182_00022 - 204 0.024 14.4 0.8 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP007182_00022 - 204 0.024 14.4 0.8 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP007182_00022 - 204 0.024 14.4 0.8 3 3 0.01 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP007182_00022 - 204 0.028 14.5 4.9 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP007182_00022 - 204 0.028 14.5 4.9 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP007182_00022 - 204 0.028 14.5 4.9 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCP007182_00022 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP007182_00022 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP007182_00022 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pCP007182_00023 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP007182_00023 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pCP007182_00023 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pCP007182_00025 - 87 1.4e-15 57.3 6.9 1 1 1.8e-19 1.6e-15 57.1 6.9 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP007182_00025 - 87 0.041 13.8 3.5 1 1 5.4e-06 0.049 13.5 3.3 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pCP007182_00026 - 922 3.3e-50 171.1 0.4 1 1 1.3e-53 7.5e-50 169.9 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP007182_00026 - 922 7.2e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pCP007182_00026 - 922 0.046 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pCP007182_00027 - 185 3e-29 101.4 0.0 1 1 8.1e-33 4.8e-29 100.8 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCP007182_00027 - 185 0.0017 18.4 0.0 1 1 6e-07 0.0036 17.4 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) DUF5512 PF17631.2 139 pCP007182_00027 - 185 0.071 13.1 0.1 1 1 2.2e-05 0.13 12.2 0.1 77 131 80 130 3 133 0.85 Family of unknown function (DUF5512) DUF3251 PF11622.8 165 pCP007182_00028 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pCP007182_00028 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pCP007182_00028 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pCP007182_00028 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP007182_00028 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP007182_00028 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pCP007182_00028 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP007182_00028 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP007182_00028 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pCP007182_00028 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pCP007182_00028 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pCP007182_00028 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP007182_00028 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP007182_00028 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pCP007182_00029 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pCP007182_00030 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP007182_00030 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP007182_00030 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP007182_00030 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP007182_00030 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP007182_00030 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP007182_00030 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pCP007182_00031 - 323 5.3e-28 98.8 13.9 1 1 2.7e-31 6.9e-28 98.4 13.9 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP007182_00031 - 323 0.0037 17.4 0.4 1 2 1 2.6e+03 -1.4 0.0 30 53 134 157 122 164 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP007182_00031 - 323 0.0037 17.4 0.4 2 2 6.1e-06 0.016 15.4 0.1 18 82 195 259 188 263 0.92 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP007182_00031 - 323 0.0077 16.9 5.4 1 3 0.066 1.7e+02 2.9 0.4 92 135 104 145 42 146 0.58 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP007182_00031 - 323 0.0077 16.9 5.4 2 3 0.096 2.5e+02 2.3 0.4 52 135 111 145 89 182 0.59 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP007182_00031 - 323 0.0077 16.9 5.4 3 3 3e-06 0.0077 16.9 5.4 47 128 219 318 203 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pCP007182_00031 - 323 0.064 12.8 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pCP007182_00031 - 323 0.064 12.8 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pCP007182_00031 - 323 0.11 13.2 3.6 1 2 2 5e+03 -1.8 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP007182_00031 - 323 0.11 13.2 3.6 2 2 3.1e-05 0.08 13.6 1.1 32 84 209 270 203 295 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 pCP007182_00031 - 323 3.8 7.8 11.9 1 3 0.00063 1.6 9.0 0.2 57 107 101 151 97 185 0.93 Tho complex subunit 7 THOC7 PF05615.13 132 pCP007182_00031 - 323 3.8 7.8 11.9 2 3 0.048 1.2e+02 2.9 0.9 56 92 210 253 199 263 0.57 Tho complex subunit 7 THOC7 PF05615.13 132 pCP007182_00031 - 323 3.8 7.8 11.9 3 3 0.22 5.6e+02 0.8 5.3 20 71 235 294 227 315 0.62 Tho complex subunit 7 DHR10 PF18595.1 117 pCP007182_00031 - 323 5.9 7.0 14.5 1 2 0.1 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pCP007182_00031 - 323 5.9 7.0 14.5 2 2 0.00025 0.64 10.1 6.3 37 105 233 300 223 313 0.84 Designed helical repeat protein 10 domain TrbL PF04610.14 215 pCP007182_00032 - 332 2.9e-31 108.9 34.2 1 2 4.9e-35 2.9e-31 108.9 34.2 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP007182_00032 - 332 2.9e-31 108.9 34.2 2 2 0.56 3.4e+03 -2.4 0.1 58 87 290 325 265 330 0.46 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP007182_00032 - 332 0.059 13.2 2.2 1 2 0.4 2.4e+03 -1.6 0.1 39 51 71 83 62 115 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP007182_00032 - 332 0.059 13.2 2.2 2 2 1.6e-05 0.093 12.5 0.2 27 81 237 288 203 299 0.71 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP007182_00032 - 332 0.29 12.1 6.0 1 1 9.6e-05 0.57 11.1 6.0 9 38 300 329 285 331 0.89 Altered inheritance of mitochondria protein 3 VirB8 PF04335.13 214 pCP007182_00034 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP007182_00034 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pCP007182_00035 - 295 2e-54 184.5 1.3 1 1 3.7e-58 3.3e-54 183.8 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP007182_00035 - 295 0.053 13.3 0.0 1 1 1.8e-05 0.16 11.8 0.0 1 51 1 51 1 66 0.92 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pCP007182_00036 - 393 5.5e-48 163.3 0.1 1 2 0.76 6.9e+03 -3.3 0.3 136 154 141 167 120 173 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pCP007182_00036 - 393 5.5e-48 163.3 0.1 2 2 6.1e-52 5.5e-48 163.3 0.1 1 187 196 377 196 377 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP007182_00036 - 393 0.027 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 324 374 307 379 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pCP007182_00037 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP007182_00037 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP007182_00037 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP007182_00037 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP007182_00037 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP007182_00037 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP007182_00037 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP007182_00037 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP007182_00037 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP007182_00037 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP007182_00037 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP007182_00037 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP007182_00037 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP007182_00037 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP007182_00037 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP007182_00037 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP007182_00037 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP007182_00037 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP007182_00037 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP007182_00037 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP007182_00037 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP007182_00037 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP007182_00037 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP007182_00037 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP007182_00037 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP007182_00037 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP007182_00037 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP007182_00037 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP007182_00037 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP007182_00037 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP007182_00037 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP007182_00037 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pCP007182_00038 - 567 7.4e-106 354.7 0.1 1 1 1.7e-109 1e-105 354.3 0.1 3 460 58 527 46 535 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP007182_00038 - 567 9.5e-25 87.0 0.0 1 1 3.1e-28 1.9e-24 86.1 0.0 2 125 370 492 369 493 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP007182_00038 - 567 3.7e-15 55.7 0.0 1 2 7.5e-06 0.045 12.7 0.0 45 156 117 240 89 262 0.73 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP007182_00038 - 567 3.7e-15 55.7 0.0 2 2 1.8e-14 1.1e-10 41.1 0.0 187 370 311 496 274 507 0.81 Type IV secretion-system coupling protein DNA-binding domain Cag12 PF13117.6 97 pCP007182_00039 - 143 1.5e-16 60.7 0.2 1 1 2.2e-20 2e-16 60.3 0.2 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pCP007182_00039 - 143 0.061 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 pCP007182_00040 - 252 2.1e-38 131.7 1.2 1 1 1.5e-42 2.8e-38 131.3 1.2 1 154 25 190 25 192 0.90 TrbM PRELI PF04707.14 157 pCP007182_00041 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCP007182_00041 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP007182_00041 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP007182_00041 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP007182_00041 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP007182_00041 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pCP007182_00043 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP007182_00043 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pCP007182_00044 - 730 1.4e-96 324.0 8.0 1 1 1.9e-99 2e-96 323.6 8.0 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP007182_00044 - 730 1e-11 44.9 0.0 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP007182_00044 - 730 1e-11 44.9 0.0 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP007182_00044 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP007182_00044 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP007182_00044 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP007182_00044 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP007182_00044 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP007182_00044 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP007182_00044 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP007182_00044 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP007182_00044 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pCP007182_00044 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pCP007182_00044 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain EF-hand_8 PF13833.6 55 pCP007182_00044 - 730 0.052 13.4 0.2 1 2 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair EF-hand_8 PF13833.6 55 pCP007182_00044 - 730 0.052 13.4 0.2 2 2 1.7 1.8e+03 -1.2 0.0 24 36 342 354 332 355 0.83 EF-hand domain pair zf-C2H2_4 PF13894.6 24 pCP007182_00044 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP007182_00044 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP007182_00044 - 730 0.086 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP007182_00044 - 730 0.086 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 pCP007182_00044 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP007182_00044 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pCP007182_00044 - 730 0.38 11.0 3.0 1 3 1.9 2e+03 -1.0 0.0 26 47 362 383 354 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP007182_00044 - 730 0.38 11.0 3.0 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP007182_00044 - 730 0.38 11.0 3.0 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP007182_00044 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP007182_00044 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP007182_00044 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP007182_00044 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP007182_00044 - 730 0.76 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP007182_00044 - 730 0.76 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP007182_00044 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP007182_00044 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP007182_00044 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP007182_00044 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type NmrA PF05368.13 233 pCP007182_00046 - 70 0.017 14.7 0.0 1 1 1e-06 0.018 14.6 0.0 186 224 28 66 11 69 0.92 NmrA-like family GTP_EFTU PF00009.27 194 pCP007182_00048 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP007182_00048 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP007182_00048 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP007182_00048 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP007182_00048 - 639 2.2e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP007182_00048 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP007182_00048 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP007182_00048 - 639 0.0095 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP007182_00048 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP007182_00048 - 639 0.049 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family AAA_18 PF13238.6 130 pCP007182_00049 - 152 1.5e-06 28.8 0.0 1 1 4.5e-10 2e-06 28.4 0.0 44 122 15 104 2 112 0.79 AAA domain CPT PF07931.12 174 pCP007182_00049 - 152 3.5e-06 27.0 0.0 1 1 9.4e-10 4.2e-06 26.7 0.0 59 172 26 143 5 145 0.80 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 pCP007182_00049 - 152 0.0018 18.5 0.0 1 1 5.7e-07 0.0026 17.9 0.0 55 135 35 114 4 117 0.78 AAA domain MKT1_N PF12247.8 90 pCP007182_00049 - 152 0.088 13.2 0.0 1 1 3.7e-05 0.17 12.3 0.0 14 51 10 45 7 135 0.89 Temperature dependent protein affecting M2 dsRNA replication APH PF01636.23 240 pCP007182_00050 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pCP007182_00050 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pCP007182_00050 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pCP007182_00050 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pCP007182_00050 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pCP007182_00050 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 pCP007182_00051 - 139 2.2e-51 174.9 0.1 1 1 1.4e-55 2.4e-51 174.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase Adenyl_transf PF04439.12 279 pCP007182_00052 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 pCP007182_00053 - 180 3.8e-20 72.3 0.1 1 1 2.3e-23 5.3e-20 71.8 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 pCP007182_00053 - 180 1.2e-13 51.2 0.1 1 1 9.1e-17 2e-13 50.5 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 pCP007182_00053 - 180 2.7e-12 46.7 0.0 1 1 1.6e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 pCP007182_00053 - 180 1.1e-09 38.6 1.1 1 1 6e-13 1.3e-09 38.3 1.1 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 pCP007182_00053 - 180 0.0011 19.7 0.0 1 1 6.1e-07 0.0014 19.4 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 pCP007182_00053 - 180 0.0011 19.0 0.0 1 1 1.2e-06 0.0027 17.8 0.0 6 58 79 130 73 132 0.85 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 pCP007182_00053 - 180 0.015 15.4 0.0 1 1 2.6e-05 0.059 13.5 0.0 21 126 50 154 43 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 pCP007182_00053 - 180 0.038 14.0 0.0 1 1 2.9e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein APH PF01636.23 240 pCP007182_00054 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pCP007182_00054 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pCP007182_00054 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pCP007182_00054 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family TrbC PF04956.13 99 pCP007750_00002 - 87 1.4e-15 57.3 6.9 1 1 1.8e-19 1.6e-15 57.1 6.9 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP007750_00002 - 87 0.041 13.8 3.5 1 1 5.4e-06 0.049 13.5 3.3 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pCP007750_00004 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP007750_00004 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pCP007750_00004 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase Resolvase PF00239.21 146 pCP007750_00005 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP007750_00005 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP007750_00005 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP007750_00005 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP007750_00005 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP007750_00005 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP007750_00005 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCP007750_00005 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP007750_00005 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP007750_00005 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat AAA_25 PF13481.6 194 pCP007750_00006 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pCP007750_00006 - 597 0.00073 19.0 0.0 1 2 1.6e-06 0.0042 16.5 0.0 16 117 30 136 23 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP007750_00006 - 597 0.00073 19.0 0.0 2 2 0.014 37 3.5 0.0 123 183 114 176 98 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP007750_00006 - 597 0.0032 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP007750_00006 - 597 0.0032 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pCP007750_00006 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP007750_00006 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pCP007750_00006 - 597 0.028 13.8 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pCP007750_00006 - 597 0.028 13.8 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pCP007750_00006 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pCP007750_00006 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pCP007750_00006 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain HicB_lk_antitox PF15919.5 123 pCP007750_00007 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 pCP007750_00008 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pCP007750_00008 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 pCP007750_00008 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) UBA_6 PF18039.1 42 pCP007750_00009 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 pCP007750_00009 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pCP007750_00009 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 pCP007750_00009 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region DUF4223 PF13978.6 54 pCP007750_00010 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pCP007750_00010 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pCP007750_00010 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 pCP007750_00011 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pCP007750_00011 - 408 0.074 13.0 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pCP007750_00011 - 408 0.13 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pCP007750_00011 - 408 0.27 11.9 5.3 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP007750_00011 - 408 0.27 11.9 5.3 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF2400 PF09674.10 227 pCP007750_00012 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pCP007750_00012 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) CdvA PF18822.1 123 pCP007750_00014 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP007750_00014 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 pCP007750_00014 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 pCP007750_00014 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP007750_00014 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 pCP007750_00015 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP007750_00015 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP007750_00015 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP007750_00015 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP007750_00015 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP007750_00015 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP007750_00015 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pCP007750_00015 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP007750_00015 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pCP007750_00015 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP007750_00015 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Relaxase PF03432.14 242 pCP007750_00016 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP007750_00016 - 462 1.9e-10 40.8 7.0 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_19 PF12844.7 65 pCP007750_00017 - 314 9.3e-06 25.6 0.1 1 2 0.0025 4.5 7.4 0.0 11 31 9 29 1 41 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 pCP007750_00017 - 314 9.3e-06 25.6 0.1 2 2 8.7e-06 0.016 15.3 0.0 28 64 117 152 98 153 0.91 Helix-turn-helix domain HTH_3 PF01381.22 55 pCP007750_00017 - 314 9.6e-06 25.6 0.0 1 2 3.2e-07 0.00057 19.9 0.0 2 29 3 30 2 30 0.89 Helix-turn-helix HTH_3 PF01381.22 55 pCP007750_00017 - 314 9.6e-06 25.6 0.0 2 2 0.051 91 3.2 0.0 26 55 118 147 110 147 0.89 Helix-turn-helix Phage_CI_repr PF07022.13 65 pCP007750_00017 - 314 0.00071 19.6 0.0 1 2 2.5e-05 0.045 13.8 0.0 5 49 4 47 1 53 0.78 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP007750_00017 - 314 0.00071 19.6 0.0 2 2 0.051 91 3.3 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 pCP007750_00017 - 314 0.0073 15.8 0.0 1 2 5.5e-05 0.099 12.2 0.0 17 34 10 27 10 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP007750_00017 - 314 0.0073 15.8 0.0 2 2 0.21 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 pCP007750_00017 - 314 0.0089 16.1 0.0 1 2 1.7e-05 0.03 14.5 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain HTH_28 PF13518.6 52 pCP007750_00017 - 314 0.0089 16.1 0.0 2 2 3.4 6.2e+03 -2.6 0.0 6 21 44 59 42 67 0.63 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 pCP007750_00017 - 314 0.011 15.6 0.2 1 2 1.6e-05 0.028 14.3 0.0 2 36 3 37 2 49 0.79 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 pCP007750_00017 - 314 0.011 15.6 0.2 2 2 3.5 6.2e+03 -2.8 0.1 38 47 290 299 289 300 0.85 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 pCP007750_00017 - 314 0.017 14.9 0.0 1 2 2.7e-05 0.049 13.4 0.0 16 37 7 30 1 36 0.87 Homeodomain-like domain HTH_23 PF13384.6 50 pCP007750_00017 - 314 0.017 14.9 0.0 2 2 2.6 4.7e+03 -2.4 0.0 35 49 54 67 53 67 0.81 Homeodomain-like domain Sigma70_r4_2 PF08281.12 54 pCP007750_00017 - 314 0.026 14.2 0.0 1 1 3.1e-05 0.055 13.1 0.0 25 46 9 30 6 30 0.93 Sigma-70, region 4 HTH_31 PF13560.6 64 pCP007750_00017 - 314 0.065 13.6 0.0 1 1 6.8e-05 0.12 12.7 0.0 13 33 9 29 3 38 0.89 Helix-turn-helix domain CENP-B_N PF04218.13 53 pCP007750_00017 - 314 0.073 12.7 0.0 1 2 0.00019 0.35 10.5 0.0 22 44 10 32 8 35 0.92 CENP-B N-terminal DNA-binding domain CENP-B_N PF04218.13 53 pCP007750_00017 - 314 0.073 12.7 0.0 2 2 2 3.6e+03 -2.3 0.0 32 41 293 302 290 303 0.82 CENP-B N-terminal DNA-binding domain NYN PF01936.18 147 pCP007750_00018 - 226 1.1e-09 38.9 1.0 1 1 2.6e-13 4.7e-09 36.9 1.0 49 120 123 195 4 216 0.83 NYN domain SNF2_N PF00176.23 350 pCP007750_00019 - 1932 1.7e-16 59.9 1.1 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP007750_00019 - 1932 1.7e-16 59.9 1.1 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP007750_00019 - 1932 1.7e-16 59.9 1.1 3 3 1.2 4.4e+03 -3.9 0.0 173 197 1880 1905 1861 1922 0.71 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP007750_00019 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP007750_00019 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP007750_00019 - 1932 4.9e-08 33.2 8.3 3 3 0.41 1.5e+03 -0.9 5.7 35 121 1800 1904 1747 1931 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP007750_00019 - 1932 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP007750_00019 - 1932 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP007750_00019 - 1932 6.2e-06 26.1 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP007750_00019 - 1932 6.2e-06 26.1 1.6 2 2 0.086 3.1e+02 1.0 0.0 119 155 1883 1924 1827 1930 0.76 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP007750_00019 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP007750_00019 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 pCP007750_00020 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 pCP007750_00021 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP007750_00021 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP007750_00021 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP007750_00021 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP007750_00021 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP007750_00021 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pCP007750_00022 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP007750_00022 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 pCP007750_00023 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP007750_00023 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP007750_00023 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP007750_00023 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP007750_00023 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP007750_00023 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 pCP007750_00024 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP007750_00024 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP007750_00024 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pCP007750_00024 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pCP007750_00024 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pCP007750_00024 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP007750_00024 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP007750_00024 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP007750_00024 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 pCP007750_00025 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCP007750_00025 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain Lip_prot_lig_C PF10437.9 85 pCP007750_00026 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCP007750_00026 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pCP007750_00026 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP007750_00026 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain W2 PF02020.18 79 pCP007750_00027 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pCP007750_00027 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pCP007750_00027 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain DUF5442 PF17514.2 107 pCP007750_00029 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pCP007750_00029 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) GTP_EFTU PF00009.27 194 pCP007750_00030 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP007750_00030 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP007750_00030 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP007750_00030 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP007750_00030 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP007750_00030 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP007750_00030 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP007750_00030 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP007750_00030 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP007750_00030 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 pCP007750_00032 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP007750_00032 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain Topoisom_bac PF01131.20 413 pCP007750_00033 - 730 1.2e-96 324.2 8.2 1 1 1.6e-99 1.7e-96 323.8 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP007750_00033 - 730 1.8e-12 47.4 0.4 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP007750_00033 - 730 1.8e-12 47.4 0.4 2 2 4.1 4.3e+03 -2.0 0.1 38 56 537 556 489 568 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP007750_00033 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP007750_00033 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP007750_00033 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP007750_00033 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP007750_00033 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP007750_00033 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP007750_00033 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP007750_00033 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP007750_00033 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pCP007750_00033 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pCP007750_00033 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pCP007750_00033 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP007750_00033 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP007750_00033 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP007750_00033 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pCP007750_00033 - 730 0.088 12.7 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pCP007750_00033 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP007750_00033 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pCP007750_00033 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP007750_00033 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP007750_00033 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP007750_00033 - 730 0.55 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP007750_00033 - 730 0.55 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP007750_00033 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP007750_00033 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP007750_00033 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP007750_00033 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP007750_00033 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP007750_00033 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP007750_00033 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP007750_00033 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 pCP007750_00034 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP007750_00034 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 pCP007750_00036 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCP007750_00036 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP007750_00036 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP007750_00036 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP007750_00036 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP007750_00036 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 pCP007750_00037 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 pCP007750_00038 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pCP007750_00038 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pCP007750_00038 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP007750_00038 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP007750_00038 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 pCP007750_00039 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP007750_00039 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP007750_00039 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP007750_00039 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP007750_00039 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 pCP007750_00040 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP007750_00040 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP007750_00040 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP007750_00040 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP007750_00040 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP007750_00040 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP007750_00040 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP007750_00040 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP007750_00040 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP007750_00040 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP007750_00040 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP007750_00040 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP007750_00040 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP007750_00040 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP007750_00040 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP007750_00040 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP007750_00040 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP007750_00040 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP007750_00040 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP007750_00040 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP007750_00040 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP007750_00040 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP007750_00040 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP007750_00040 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP007750_00040 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP007750_00040 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP007750_00040 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP007750_00040 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP007750_00040 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP007750_00040 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP007750_00040 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP007750_00040 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 pCP007750_00041 - 390 3.1e-48 164.1 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 193 374 193 374 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP007750_00041 - 390 0.028 13.5 0.1 1 1 4.8e-06 0.043 12.9 0.1 31 81 321 371 304 376 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 pCP007750_00042 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP007750_00042 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP007750_00042 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 pCP007750_00043 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP007750_00043 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 pCP007750_00044 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP007750_00044 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 pCP007750_00045 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP007750_00045 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP007750_00045 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP007750_00045 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP007750_00045 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 pCP007750_00046 - 323 1.6e-28 100.5 13.6 1 1 6.7e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP007750_00046 - 323 0.0055 16.8 0.6 1 2 0.85 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP007750_00046 - 323 0.0055 16.8 0.6 2 2 6.9e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP007750_00046 - 323 0.015 16.0 5.3 1 2 0.04 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP007750_00046 - 323 0.015 16.0 5.3 2 2 5e-06 0.015 16.0 5.3 49 128 225 318 205 322 0.76 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 pCP007750_00046 - 323 0.018 15.7 1.0 1 2 1.9 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP007750_00046 - 323 0.018 15.7 1.0 2 2 1.2e-05 0.036 14.7 0.2 31 84 208 270 197 310 0.85 von Willebrand factor type A domain THOC7 PF05615.13 132 pCP007750_00046 - 323 2.9 8.2 11.5 1 2 0.00053 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pCP007750_00046 - 323 2.9 8.2 11.5 2 2 0.16 4.9e+02 1.0 6.0 15 71 230 294 215 315 0.58 Tho complex subunit 7 DHR10 PF18595.1 117 pCP007750_00046 - 323 5.1 7.2 14.8 1 2 0.087 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pCP007750_00046 - 323 5.1 7.2 14.8 2 2 0.00018 0.55 10.3 6.5 37 105 233 300 223 313 0.82 Designed helical repeat protein 10 domain IF2_N PF04760.15 54 pCP007750_00047 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP007750_00047 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP007750_00047 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP007750_00047 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP007750_00047 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP007750_00047 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP007750_00047 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 pCP007750_00048 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3251 PF11622.8 165 pCP007750_00049 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pCP007750_00049 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pCP007750_00049 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pCP007750_00049 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP007750_00049 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP007750_00049 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pCP007750_00049 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP007750_00049 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP007750_00049 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pCP007750_00049 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pCP007750_00049 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pCP007750_00049 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP007750_00049 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP007750_00049 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) Phage_pRha PF09669.10 88 pCP007750_00050 - 185 6.3e-29 100.4 0.0 1 1 2.7e-32 9.7e-29 99.8 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCP007750_00050 - 185 0.0015 18.6 0.0 1 1 9.1e-07 0.0033 17.5 0.0 23 90 27 94 23 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pCP007750_00050 - 185 0.045 13.3 0.1 1 2 0.066 2.4e+02 1.3 0.0 80 118 33 71 5 80 0.79 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pCP007750_00050 - 185 0.045 13.3 0.1 2 2 0.00012 0.42 10.2 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pCP007750_00050 - 185 0.086 12.9 0.0 1 1 5.8e-05 0.21 11.6 0.0 77 131 80 130 63 134 0.84 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pCP007750_00050 - 185 0.73 9.9 5.7 1 3 0.054 1.9e+02 2.1 0.0 43 53 15 25 4 29 0.81 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP007750_00050 - 185 0.73 9.9 5.7 2 3 0.0022 7.9 6.6 0.8 5 26 30 50 26 61 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP007750_00050 - 185 0.73 9.9 5.7 3 3 0.064 2.3e+02 1.9 0.0 10 42 116 154 108 160 0.67 Sporulation protein Cse60 CagE_TrbE_VirB PF03135.14 206 pCP007750_00051 - 559 1.6e-28 100.2 0.0 1 1 7.6e-32 4.5e-28 98.8 0.0 88 206 1 119 1 119 0.99 CagE, TrbE, VirB family, component of type IV transporter system HNOBA PF07701.14 221 pCP007750_00051 - 559 0.022 14.2 0.1 1 1 6.2e-06 0.037 13.5 0.1 53 153 261 481 259 489 0.85 Heme NO binding associated cEGF PF12662.7 24 pCP007750_00051 - 559 0.2 11.6 0.0 1 1 9.1e-05 0.54 10.2 0.0 14 24 396 407 392 407 0.82 Complement Clr-like EGF-like TrbC PF04956.13 99 pCP007752_00003 - 87 1.4e-15 57.3 6.9 1 1 1.8e-19 1.6e-15 57.1 6.9 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP007752_00003 - 87 0.041 13.8 3.5 1 1 5.4e-06 0.049 13.5 3.3 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pCP007752_00005 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP007752_00005 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pCP007752_00005 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase Resolvase PF00239.21 146 pCP007752_00006 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP007752_00006 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP007752_00006 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP007752_00006 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP007752_00006 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP007752_00006 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP007752_00006 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCP007752_00006 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP007752_00006 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP007752_00006 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat AAA_25 PF13481.6 194 pCP007752_00007 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pCP007752_00007 - 597 0.00073 19.0 0.0 1 2 1.6e-06 0.0042 16.5 0.0 16 117 30 136 23 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP007752_00007 - 597 0.00073 19.0 0.0 2 2 0.014 37 3.5 0.0 123 183 114 176 98 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP007752_00007 - 597 0.0032 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP007752_00007 - 597 0.0032 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pCP007752_00007 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP007752_00007 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pCP007752_00007 - 597 0.028 13.8 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pCP007752_00007 - 597 0.028 13.8 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pCP007752_00007 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pCP007752_00007 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pCP007752_00007 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain HicB_lk_antitox PF15919.5 123 pCP007752_00008 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system UBA_6 PF18039.1 42 pCP007752_00011 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 pCP007752_00011 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pCP007752_00011 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 pCP007752_00011 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region DUF4223 PF13978.6 54 pCP007752_00012 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pCP007752_00012 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pCP007752_00012 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 pCP007752_00013 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pCP007752_00013 - 408 0.074 13.0 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pCP007752_00013 - 408 0.13 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pCP007752_00013 - 408 0.27 11.9 5.3 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP007752_00013 - 408 0.27 11.9 5.3 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF2400 PF09674.10 227 pCP007752_00014 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pCP007752_00014 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) CdvA PF18822.1 123 pCP007752_00016 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP007752_00016 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 pCP007752_00016 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 pCP007752_00016 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP007752_00016 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 pCP007752_00017 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP007752_00017 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP007752_00017 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP007752_00017 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP007752_00017 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP007752_00017 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP007752_00017 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pCP007752_00017 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP007752_00017 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pCP007752_00017 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP007752_00017 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Relaxase PF03432.14 242 pCP007752_00018 - 462 2.1e-10 40.6 7.3 1 2 1.2e-14 2.1e-10 40.6 7.3 41 229 102 297 70 316 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP007752_00018 - 462 2.1e-10 40.6 7.3 2 2 0.042 7.6e+02 -0.5 6.9 137 183 348 394 314 427 0.71 Relaxase/Mobilisation nuclease domain Acetyltransf_7 PF13508.7 76 pCP007752_00019 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pCP007752_00019 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family SNF2_N PF00176.23 350 pCP007752_00020 - 1212 2.3e-16 59.4 3.3 1 3 7.4e-20 2.7e-16 59.3 0.4 56 245 297 553 215 568 0.73 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP007752_00020 - 1212 2.3e-16 59.4 3.3 2 3 0.4 1.4e+03 -2.3 0.0 245 283 749 792 742 811 0.70 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP007752_00020 - 1212 2.3e-16 59.4 3.3 3 3 0.4 1.4e+03 -2.4 0.0 170 200 1157 1188 1127 1202 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP007752_00020 - 1212 3.3e-08 33.7 8.7 1 2 9.3e-12 3.3e-08 33.7 8.7 2 148 280 492 279 523 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP007752_00020 - 1212 3.3e-08 33.7 8.7 2 2 1.4 5.1e+03 -2.7 8.5 35 121 1080 1184 956 1209 0.71 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP007752_00020 - 1212 9.9e-07 29.1 1.8 1 3 0.1 3.7e+02 1.5 0.0 45 73 357 385 307 389 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP007752_00020 - 1212 9.9e-07 29.1 1.8 2 3 7.4e-09 2.7e-05 24.5 0.0 40 111 791 864 745 864 0.79 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP007752_00020 - 1212 9.9e-07 29.1 1.8 3 3 3.8 1.4e+04 -3.5 0.1 33 66 1134 1167 1116 1171 0.56 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP007752_00020 - 1212 1.4e-06 28.2 1.4 1 2 1.7e-07 0.00061 19.6 0.3 2 108 284 389 283 488 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP007752_00020 - 1212 1.4e-06 28.2 1.4 2 2 0.065 2.3e+02 1.4 0.0 119 150 1163 1196 1103 1208 0.70 DEAD/DEAH box helicase BST2 PF16716.5 91 pCP007752_00020 - 1212 2.6 8.7 5.8 1 2 0.003 11 6.7 2.0 48 87 408 447 397 451 0.89 Bone marrow stromal antigen 2 BST2 PF16716.5 91 pCP007752_00020 - 1212 2.6 8.7 5.8 2 2 0.24 8.6e+02 0.6 0.1 59 80 1124 1145 1111 1155 0.75 Bone marrow stromal antigen 2 Eco57I PF07669.11 106 pCP007752_00021 - 677 5.7e-06 26.8 0.9 1 2 8.9e-09 8e-05 23.1 0.2 3 103 310 410 308 413 0.78 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP007752_00021 - 677 5.7e-06 26.8 0.9 2 2 0.07 6.3e+02 0.9 0.0 40 81 598 639 560 657 0.75 Eco57I restriction-modification methylase MTS PF05175.14 169 pCP007752_00021 - 677 0.0039 16.8 0.0 1 1 1.1e-06 0.0095 15.5 0.0 31 144 247 365 237 380 0.72 Methyltransferase small domain RHH_7 PF16777.5 74 pCP007752_00022 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 pCP007752_00023 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP007752_00023 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP007752_00023 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP007752_00023 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP007752_00023 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP007752_00023 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pCP007752_00024 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP007752_00024 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) NPA PF16469.5 123 pCP007752_00025 - 113 0.02 15.5 5.1 1 1 1.4e-06 0.025 15.1 5.1 12 103 20 111 10 113 0.86 Nematode polyprotein allergen ABA-1 DUF4044 PF13253.6 33 pCP007752_00026 - 83 0.012 15.1 1.1 1 1 4.1e-06 0.019 14.5 1.1 9 32 17 40 15 41 0.88 Protein of unknown function (DUF4044) DUF443 PF04276.12 203 pCP007752_00026 - 83 0.013 15.3 6.9 1 1 3.1e-06 0.014 15.2 6.9 126 198 5 77 1 80 0.78 Protein of unknown function (DUF443) Claudin_2 PF13903.6 193 pCP007752_00026 - 83 0.03 14.1 1.0 1 1 7.5e-06 0.034 13.9 1.0 80 147 11 78 6 82 0.87 PMP-22/EMP/MP20/Claudin tight junction Popeye PF04831.13 140 pCP007752_00026 - 83 0.16 12.1 2.0 1 1 3.7e-05 0.16 12.1 1.2 8 49 36 78 28 81 0.72 Popeye protein conserved region LysE PF01810.18 193 pCP007752_00027 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP007752_00027 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP007752_00027 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pCP007752_00027 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pCP007752_00027 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pCP007752_00027 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP007752_00027 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP007752_00027 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP007752_00027 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 pCP007752_00028 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCP007752_00028 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain CtsR_C PF17727.1 72 pCP007752_00029 - 107 0.036 14.2 0.3 1 2 0.00019 3.4 7.9 0.0 3 38 31 66 27 73 0.86 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP007752_00029 - 107 0.036 14.2 0.3 2 2 0.0023 41 4.4 0.0 28 48 74 94 71 99 0.84 CtsR C-terminal dimerization domain W2 PF02020.18 79 pCP007752_00030 - 266 0.02 15.0 0.1 1 2 0.23 4.1e+03 -2.0 0.0 43 65 155 177 150 179 0.61 eIF4-gamma/eIF5/eIF2-epsilon W2 PF02020.18 79 pCP007752_00030 - 266 0.02 15.0 0.1 2 2 3.4e-06 0.061 13.5 0.0 38 77 180 240 176 242 0.86 eIF4-gamma/eIF5/eIF2-epsilon APH PF01636.23 240 pCP007752_00031 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pCP007752_00031 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pCP007752_00031 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pCP007752_00031 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family Peptidase_C15 PF01470.17 202 pCP007752_00032 - 139 2.2e-51 174.9 0.1 1 1 1.4e-55 2.4e-51 174.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase APH PF01636.23 240 pCP007752_00033 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pCP007752_00033 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pCP007752_00033 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pCP007752_00033 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pCP007752_00033 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pCP007752_00033 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase AAA_18 PF13238.6 130 pCP007752_00034 - 152 1.5e-06 28.8 0.0 1 1 4.5e-10 2e-06 28.4 0.0 44 122 15 104 2 112 0.79 AAA domain CPT PF07931.12 174 pCP007752_00034 - 152 3.5e-06 27.0 0.0 1 1 9.4e-10 4.2e-06 26.7 0.0 59 172 26 143 5 145 0.80 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 pCP007752_00034 - 152 0.0018 18.5 0.0 1 1 5.7e-07 0.0026 17.9 0.0 55 135 35 114 4 117 0.78 AAA domain MKT1_N PF12247.8 90 pCP007752_00034 - 152 0.088 13.2 0.0 1 1 3.7e-05 0.17 12.3 0.0 14 51 10 45 7 135 0.89 Temperature dependent protein affecting M2 dsRNA replication GTP_EFTU PF00009.27 194 pCP007752_00035 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP007752_00035 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP007752_00035 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP007752_00035 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP007752_00035 - 639 2.2e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP007752_00035 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP007752_00035 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP007752_00035 - 639 0.0095 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP007752_00035 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP007752_00035 - 639 0.049 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 pCP007752_00037 - 340 0.00071 19.5 1.8 1 1 2.3e-07 0.0021 18.0 1.8 4 125 209 324 206 339 0.65 PcfJ-like protein Intein_splicing PF14890.6 134 pCP007752_00037 - 340 0.033 14.1 2.9 1 1 2.8e-05 0.25 11.3 2.9 37 119 189 316 88 322 0.75 Intein splicing domain Topoisom_bac PF01131.20 413 pCP007752_00039 - 731 1.2e-96 324.2 8.2 1 1 1.5e-99 1.7e-96 323.8 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP007752_00039 - 731 1.8e-12 47.4 0.4 1 2 9.2e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP007752_00039 - 731 1.8e-12 47.4 0.4 2 2 3.9 4.4e+03 -2.0 0.0 38 56 537 556 489 567 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP007752_00039 - 731 1.4e-08 34.4 15.0 1 2 3.7e-09 4.1e-06 26.5 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP007752_00039 - 731 1.4e-08 34.4 15.0 2 2 6.8e-05 0.076 12.8 2.3 3 27 683 710 681 723 0.86 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP007752_00039 - 731 1e-05 25.7 2.3 1 3 8.3 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP007752_00039 - 731 1e-05 25.7 2.3 2 3 0.00037 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP007752_00039 - 731 1e-05 25.7 2.3 3 3 3.8e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP007752_00039 - 731 0.012 15.7 1.3 1 2 0.0077 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP007752_00039 - 731 0.012 15.7 1.3 2 2 0.0045 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP007752_00039 - 731 0.028 14.8 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP007752_00039 - 731 0.028 14.8 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 pCP007752_00039 - 731 0.056 14.3 2.8 1 2 0.0071 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP007752_00039 - 731 0.056 14.3 2.8 2 2 0.021 23 6.1 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP007752_00039 - 731 0.087 12.3 2.7 1 2 0.003 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP007752_00039 - 731 0.087 12.3 2.7 2 2 0.02 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pCP007752_00039 - 731 0.088 12.7 0.0 1 1 0.00027 0.3 10.9 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pCP007752_00039 - 731 0.089 13.1 4.5 1 2 0.00079 0.89 9.9 3.7 5 64 627 689 623 696 0.71 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP007752_00039 - 731 0.089 13.1 4.5 2 2 0.0023 2.6 8.4 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pCP007752_00039 - 731 0.46 10.7 3.3 1 3 1.7 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP007752_00039 - 731 0.46 10.7 3.3 2 3 5 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP007752_00039 - 731 0.46 10.7 3.3 3 3 0.00076 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP007752_00039 - 731 0.55 9.9 3.0 1 2 0.03 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP007752_00039 - 731 0.55 9.9 3.0 2 2 0.011 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP007752_00039 - 731 0.64 10.0 3.8 1 2 0.0041 4.6 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP007752_00039 - 731 0.64 10.0 3.8 2 2 0.13 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP007752_00039 - 731 0.76 9.9 3.8 1 2 0.1 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP007752_00039 - 731 0.76 9.9 3.8 2 2 0.0039 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP007752_00039 - 731 7 6.5 8.0 1 2 0.046 52 3.7 2.5 15 31 629 645 627 660 0.79 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP007752_00039 - 731 7 6.5 8.0 2 2 0.016 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP007752_00039 - 731 8.4 6.4 6.5 1 2 0.01 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP007752_00039 - 731 8.4 6.4 6.5 2 2 0.088 99 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 pCP007752_00040 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP007752_00040 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 pCP007752_00042 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCP007752_00042 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP007752_00042 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP007752_00042 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP007752_00042 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP007752_00042 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 pCP007752_00043 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 pCP007752_00044 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pCP007752_00044 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pCP007752_00044 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP007752_00044 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP007752_00044 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 pCP007752_00045 - 502 6.6e-104 348.3 0.0 1 1 2.3e-107 1e-103 347.7 0.0 32 461 13 464 4 470 0.86 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP007752_00045 - 502 6.6e-25 87.5 0.0 1 1 3.4e-28 1.5e-24 86.4 0.0 2 125 305 427 304 428 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP007752_00045 - 502 9.9e-15 54.3 0.0 1 2 3.1e-05 0.14 11.0 0.0 45 146 52 165 24 194 0.73 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP007752_00045 - 502 9.9e-15 54.3 0.0 2 2 1.9e-14 8.6e-11 41.4 0.0 187 370 246 431 206 442 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP007752_00045 - 502 0.037 14.2 0.1 1 1 1.9e-05 0.084 13.0 0.1 2 60 64 125 63 134 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 pCP007752_00047 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP007752_00047 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP007752_00047 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP007752_00047 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP007752_00047 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP007752_00047 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP007752_00047 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP007752_00047 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP007752_00047 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP007752_00047 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP007752_00047 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP007752_00047 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP007752_00047 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP007752_00047 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP007752_00047 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP007752_00047 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP007752_00047 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP007752_00047 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP007752_00047 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP007752_00047 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP007752_00047 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP007752_00047 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP007752_00047 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP007752_00047 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP007752_00047 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP007752_00047 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP007752_00047 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP007752_00047 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP007752_00047 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP007752_00047 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP007752_00047 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP007752_00047 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 pCP007752_00048 - 390 3.1e-48 164.1 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 193 374 193 374 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP007752_00048 - 390 0.028 13.5 0.1 1 1 4.8e-06 0.043 12.9 0.1 31 81 321 371 304 376 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 pCP007752_00049 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP007752_00049 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP007752_00049 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 pCP007752_00050 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP007752_00050 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 pCP007752_00051 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP007752_00051 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 pCP007752_00052 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP007752_00052 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP007752_00052 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP007752_00052 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP007752_00052 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 pCP007752_00053 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP007752_00053 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP007752_00053 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP007752_00053 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP007752_00053 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pCP007752_00053 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pCP007752_00053 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pCP007752_00053 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP007752_00053 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 pCP007752_00053 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pCP007752_00053 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pCP007752_00053 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pCP007752_00053 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 pCP007752_00053 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pCP007752_00053 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain IF2_N PF04760.15 54 pCP007752_00054 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP007752_00054 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP007752_00054 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP007752_00054 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP007752_00054 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP007752_00054 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP007752_00054 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 pCP007752_00055 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3251 PF11622.8 165 pCP007752_00056 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pCP007752_00056 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pCP007752_00056 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pCP007752_00056 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP007752_00056 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP007752_00056 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pCP007752_00056 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP007752_00056 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP007752_00056 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pCP007752_00056 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pCP007752_00056 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pCP007752_00056 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP007752_00056 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP007752_00056 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) Phage_pRha PF09669.10 88 pCP007752_00057 - 185 6.3e-29 100.4 0.0 1 1 2.7e-32 9.7e-29 99.8 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCP007752_00057 - 185 0.0015 18.6 0.0 1 1 9.1e-07 0.0033 17.5 0.0 23 90 27 94 23 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pCP007752_00057 - 185 0.045 13.3 0.1 1 2 0.066 2.4e+02 1.3 0.0 80 118 33 71 5 80 0.79 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pCP007752_00057 - 185 0.045 13.3 0.1 2 2 0.00012 0.42 10.2 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pCP007752_00057 - 185 0.086 12.9 0.0 1 1 5.8e-05 0.21 11.6 0.0 77 131 80 130 63 134 0.84 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pCP007752_00057 - 185 0.73 9.9 5.7 1 3 0.054 1.9e+02 2.1 0.0 43 53 15 25 4 29 0.81 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP007752_00057 - 185 0.73 9.9 5.7 2 3 0.0022 7.9 6.6 0.8 5 26 30 50 26 61 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP007752_00057 - 185 0.73 9.9 5.7 3 3 0.064 2.3e+02 1.9 0.0 10 42 116 154 108 160 0.67 Sporulation protein Cse60 bZIP_1 PF00170.21 64 pCP007752_00058 - 143 0.68 10.1 5.2 1 2 0.0016 29 4.9 0.4 28 57 2 31 1 37 0.84 bZIP transcription factor bZIP_1 PF00170.21 64 pCP007752_00058 - 143 0.68 10.1 5.2 2 2 0.00028 5 7.3 0.5 36 57 120 141 117 143 0.90 bZIP transcription factor TraC_F_IV PF11130.8 238 pCP009044_00001 - 830 7.6e-30 104.3 0.0 1 1 6.3e-33 1.4e-29 103.4 0.0 2 237 29 251 28 252 0.92 F pilus assembly Type-IV secretion system for plasmid transfer AAA_10 PF12846.7 362 pCP009044_00001 - 830 3.3e-10 39.4 0.0 1 1 7.4e-13 1.7e-09 37.1 0.0 23 292 455 716 450 741 0.78 AAA-like domain TrwB_AAD_bind PF10412.9 386 pCP009044_00001 - 830 0.00074 18.5 0.0 1 2 0.00072 1.6 7.5 0.0 19 85 457 522 442 547 0.75 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP009044_00001 - 830 0.00074 18.5 0.0 2 2 0.00036 0.8 8.5 0.0 225 286 645 711 620 740 0.79 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 137 pCP009044_00001 - 830 0.0072 16.6 0.1 1 3 0.98 2.2e+03 -1.2 0.0 106 135 74 98 64 100 0.77 AAA domain AAA_22 PF13401.6 137 pCP009044_00001 - 830 0.0072 16.6 0.1 2 3 0.016 36 4.6 0.0 9 25 457 473 455 491 0.90 AAA domain AAA_22 PF13401.6 137 pCP009044_00001 - 830 0.0072 16.6 0.1 3 3 0.0018 4.1 7.7 0.0 84 128 653 703 644 709 0.72 AAA domain Zot PF05707.12 194 pCP009044_00001 - 830 0.012 15.2 0.0 1 1 1.2e-05 0.026 14.1 0.0 84 131 667 711 652 721 0.86 Zonular occludens toxin (Zot) FH2 PF02181.23 372 pCP009044_00001 - 830 0.016 14.4 1.1 1 2 0.0084 19 4.2 0.3 310 368 94 152 73 156 0.93 Formin Homology 2 Domain FH2 PF02181.23 372 pCP009044_00001 - 830 0.016 14.4 1.1 2 2 0.00046 1 8.4 0.0 64 113 543 594 518 608 0.86 Formin Homology 2 Domain CbiA PF01656.23 128 pCP009044_00001 - 830 0.039 14.0 0.0 1 1 4.5e-05 0.1 12.7 0.0 7 55 461 561 458 715 0.75 CobQ/CobB/MinD/ParA nucleotide binding domain UPF0181 PF03701.14 50 pCP009044_00001 - 830 0.22 11.2 0.5 1 2 4.9 1.1e+04 -3.8 0.0 34 47 96 109 93 111 0.83 Uncharacterised protein family (UPF0181) UPF0181 PF03701.14 50 pCP009044_00001 - 830 0.22 11.2 0.5 2 2 0.0003 0.67 9.6 0.1 19 40 807 828 805 828 0.94 Uncharacterised protein family (UPF0181) TrbI_Ftype PF09677.10 106 pCP009044_00002 - 122 2.1e-05 24.8 1.3 1 1 1.4e-09 2.5e-05 24.6 1.3 56 100 65 110 6 116 0.87 Type-F conjugative transfer system protein (TrbI_Ftype) Peptidase_S26 PF10502.9 138 pCP009044_00003 - 165 2.2e-13 50.2 0.0 1 1 1.9e-17 3.4e-13 49.6 0.0 19 133 55 161 36 164 0.88 Signal peptidase, peptidase S26 TraH PF06122.11 361 pCP009044_00004 - 478 5.6e-68 229.8 2.0 1 1 4.4e-72 7.8e-68 229.4 2.0 6 354 32 386 26 393 0.79 Conjugative relaxosome accessory transposon protein TraN PF06986.11 240 pCP009044_00006 - 718 4.3e-29 101.9 9.8 1 5 1 1.8e+04 -7.1 9.8 9 87 252 326 245 344 0.66 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 pCP009044_00006 - 718 4.3e-29 101.9 9.8 2 5 0.24 4.3e+03 -2.9 0.1 61 76 362 377 350 395 0.81 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 pCP009044_00006 - 718 4.3e-29 101.9 9.8 3 5 1 1.8e+04 -5.3 5.4 29 73 407 446 376 485 0.55 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 pCP009044_00006 - 718 4.3e-29 101.9 9.8 4 5 0.0013 23 4.6 6.9 42 77 480 517 469 541 0.81 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 pCP009044_00006 - 718 4.3e-29 101.9 9.8 5 5 2.4e-33 4.3e-29 101.9 9.8 131 240 550 667 523 667 0.82 Type-1V conjugative transfer system mating pair stabilisation Staphylokinase PF02821.16 126 pCP009044_00011 - 121 0.075 13.5 5.2 1 2 0.00014 2.6 8.5 1.5 33 62 10 37 2 46 0.80 Staphylokinase/Streptokinase family Staphylokinase PF02821.16 126 pCP009044_00011 - 121 0.075 13.5 5.2 2 2 0.00047 8.4 6.9 0.1 40 77 48 83 44 104 0.82 Staphylokinase/Streptokinase family HTH_19 PF12844.7 65 pCP009044_00013 - 123 9.4e-08 32.0 0.6 1 2 1.6e-10 3.6e-07 30.1 0.2 3 60 20 77 19 78 0.97 Helix-turn-helix domain HTH_19 PF12844.7 65 pCP009044_00013 - 123 9.4e-08 32.0 0.6 2 2 0.56 1.3e+03 -0.5 0.0 26 35 98 107 80 119 0.68 Helix-turn-helix domain HTH_3 PF01381.22 55 pCP009044_00013 - 123 3.1e-06 27.1 0.2 1 1 2.6e-09 5.9e-06 26.2 0.2 1 55 21 76 21 76 0.93 Helix-turn-helix HTH_26 PF13443.6 63 pCP009044_00013 - 123 0.0061 17.0 0.0 1 1 4.4e-06 0.0099 16.3 0.0 11 55 30 74 20 79 0.90 Cro/C1-type HTH DNA-binding domain Phage_CI_repr PF07022.13 65 pCP009044_00013 - 123 0.012 15.7 0.0 1 1 8.1e-06 0.018 15.1 0.0 11 63 28 82 21 84 0.87 Bacteriophage CI repressor helix-turn-helix domain HTH_25 PF13413.6 62 pCP009044_00013 - 123 0.014 15.2 0.0 1 1 1.3e-05 0.028 14.3 0.0 5 42 24 61 20 75 0.84 Helix-turn-helix domain Pup PF05639.11 68 pCP009044_00013 - 123 0.02 15.8 0.3 1 1 1.7e-05 0.038 14.9 0.3 18 51 86 119 80 121 0.80 Pup-like protein Nbl1_Borealin_N PF10444.9 57 pCP009044_00013 - 123 0.047 13.3 2.8 1 3 0.04 90 2.8 0.1 10 39 13 43 8 46 0.80 Nbl1 / Borealin N terminal Nbl1_Borealin_N PF10444.9 57 pCP009044_00013 - 123 0.047 13.3 2.8 2 3 2.6 5.8e+03 -3.0 0.0 28 37 62 71 60 74 0.53 Nbl1 / Borealin N terminal Nbl1_Borealin_N PF10444.9 57 pCP009044_00013 - 123 0.047 13.3 2.8 3 3 0.00016 0.37 10.5 0.2 13 38 97 122 86 123 0.89 Nbl1 / Borealin N terminal DUF16 PF01519.16 104 pCP009044_00013 - 123 0.16 12.5 3.8 1 2 0.072 1.6e+02 2.8 0.3 35 78 13 54 4 76 0.58 Protein of unknown function DUF16 DUF16 PF01519.16 104 pCP009044_00013 - 123 0.16 12.5 3.8 2 2 0.00018 0.41 11.2 0.3 29 54 94 119 80 123 0.82 Protein of unknown function DUF16 zf-ACC PF17848.1 26 pCP009044_00016 - 81 0.0036 17.3 4.1 1 2 0.0024 2.4 8.3 0.3 2 9 11 18 11 28 0.75 Acetyl-coA carboxylase zinc finger domain zf-ACC PF17848.1 26 pCP009044_00016 - 81 0.0036 17.3 4.1 2 2 0.0008 0.8 9.8 0.4 2 12 41 50 41 55 0.76 Acetyl-coA carboxylase zinc finger domain zf-ribbon_3 PF13248.6 26 pCP009044_00016 - 81 0.0069 15.8 2.9 1 2 0.0018 1.8 8.1 0.2 17 25 11 19 6 19 0.82 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP009044_00016 - 81 0.0069 15.8 2.9 2 2 0.0019 1.9 8.0 0.2 3 11 41 49 39 52 0.74 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 43 pCP009044_00016 - 81 0.0087 15.6 2.4 1 2 0.00078 0.77 9.3 0.4 2 18 12 28 11 31 0.84 TFIIB zinc-binding TF_Zn_Ribbon PF08271.12 43 pCP009044_00016 - 81 0.0087 15.6 2.4 2 2 0.0064 6.4 6.4 0.1 21 28 42 49 37 59 0.78 TFIIB zinc-binding tRNA-synt_1g PF09334.11 391 pCP009044_00016 - 81 0.021 13.6 0.7 1 1 2.4e-05 0.024 13.4 0.7 136 175 10 49 2 59 0.87 tRNA synthetases class I (M) zf-ISL3 PF14690.6 47 pCP009044_00016 - 81 0.023 15.4 1.2 1 2 0.00026 0.26 12.0 0.1 4 28 12 35 9 38 0.80 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ISL3 PF14690.6 47 pCP009044_00016 - 81 0.023 15.4 1.2 2 2 0.21 2.1e+02 2.7 0.1 3 12 41 51 39 69 0.79 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.10 40 pCP009044_00016 - 81 0.031 14.4 0.3 1 2 0.0059 5.9 7.1 0.1 21 34 4 18 1 22 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP009044_00016 - 81 0.031 14.4 0.3 2 2 0.018 18 5.5 0.0 7 15 42 50 34 59 0.77 Zinc ribbon domain zinc_ribbon_5 PF13719.6 37 pCP009044_00016 - 81 0.032 14.0 1.0 1 3 0.011 11 5.9 0.0 4 11 12 19 10 31 0.85 zinc-ribbon domain zinc_ribbon_5 PF13719.6 37 pCP009044_00016 - 81 0.032 14.0 1.0 2 3 0.0064 6.4 6.6 0.0 27 37 42 52 37 52 0.87 zinc-ribbon domain zinc_ribbon_5 PF13719.6 37 pCP009044_00016 - 81 0.032 14.0 1.0 3 3 5.5 5.5e+03 -2.8 0.0 13 18 71 76 68 80 0.61 zinc-ribbon domain zf-LITAF-like PF10601.9 70 pCP009044_00016 - 81 0.064 13.5 1.4 1 2 0.015 15 6.0 0.3 54 64 8 18 4 23 0.65 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP009044_00016 - 81 0.064 13.5 1.4 2 2 0.0074 7.3 6.9 0.0 3 26 38 61 36 71 0.83 LITAF-like zinc ribbon domain Elf1 PF05129.13 78 pCP009044_00016 - 81 0.09 12.8 2.1 1 2 7.6e-05 0.075 13.1 0.9 20 63 9 58 2 60 0.81 Transcription elongation factor Elf1 like Elf1 PF05129.13 78 pCP009044_00016 - 81 0.09 12.8 2.1 2 2 9.8 9.8e+03 -3.3 0.0 21 26 66 71 65 75 0.72 Transcription elongation factor Elf1 like zf-C2H2_4 PF13894.6 24 pCP009044_00016 - 81 0.09 13.7 1.8 1 2 0.019 19 6.4 0.2 2 10 12 21 11 26 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP009044_00016 - 81 0.09 13.7 1.8 2 2 0.019 19 6.4 0.1 2 11 42 51 41 58 0.82 C2H2-type zinc finger zf-C2H2_3 PF13878.6 40 pCP009044_00016 - 81 0.1 12.4 1.6 1 2 0.099 98 2.9 0.1 12 20 9 17 4 23 0.78 zinc-finger of acetyl-transferase ESCO zf-C2H2_3 PF13878.6 40 pCP009044_00016 - 81 0.1 12.4 1.6 2 2 0.0014 1.4 8.8 0.1 4 25 33 52 32 56 0.74 zinc-finger of acetyl-transferase ESCO DUF4379 PF14311.6 56 pCP009044_00016 - 81 0.13 12.6 6.2 1 2 0.081 80 3.7 0.2 47 56 9 16 2 16 0.67 Probable Zinc-ribbon domain DUF4379 PF14311.6 56 pCP009044_00016 - 81 0.13 12.6 6.2 2 2 0.00049 0.49 10.8 1.4 5 47 23 58 18 71 0.67 Probable Zinc-ribbon domain DUF35_N PF12172.8 37 pCP009044_00016 - 81 0.18 11.7 2.4 1 2 0.028 28 4.7 0.1 27 33 12 18 9 22 0.75 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35_N PF12172.8 37 pCP009044_00016 - 81 0.18 11.7 2.4 2 2 0.0052 5.2 7.0 0.3 12 21 41 50 41 50 0.89 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 23 pCP009044_00016 - 81 0.22 11.3 4.3 1 2 0.0098 9.7 6.1 0.4 1 6 12 17 5 19 0.74 zinc-ribbon domain zinc_ribbon_2 PF13240.6 23 pCP009044_00016 - 81 0.22 11.3 4.3 2 2 0.0086 8.6 6.2 0.3 1 7 42 48 40 52 0.79 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP009044_00016 - 81 0.25 11.3 4.7 1 2 0.0083 8.3 6.4 0.7 4 14 12 22 10 33 0.78 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP009044_00016 - 81 0.25 11.3 4.7 2 2 0.007 7 6.7 0.2 26 35 41 50 28 51 0.77 zinc-ribbon domain CpXC PF14353.6 118 pCP009044_00016 - 81 0.25 11.4 2.4 1 1 0.0012 1.2 9.2 2.4 2 51 12 54 11 69 0.82 CpXC protein Zn_Tnp_IS91 PF14319.6 91 pCP009044_00016 - 81 0.36 10.9 4.1 1 2 0.001 1 9.4 0.4 56 82 9 35 2 41 0.78 Transposase zinc-binding domain Zn_Tnp_IS91 PF14319.6 91 pCP009044_00016 - 81 0.36 10.9 4.1 2 2 0.094 94 3.1 0.2 58 69 41 52 37 69 0.73 Transposase zinc-binding domain Zn_Tnp_IS1595 PF12760.7 46 pCP009044_00016 - 81 0.66 10.0 5.5 1 2 0.0052 5.1 7.1 3.1 19 43 11 46 1 49 0.63 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 pCP009044_00016 - 81 0.66 10.0 5.5 2 2 0.027 27 4.8 0.5 20 40 42 69 24 71 0.69 Transposase zinc-ribbon domain Phage_integrase PF00589.22 172 pCP009044_00017 - 328 4.8e-23 81.8 0.1 1 1 2.5e-26 8.8e-23 80.9 0.1 2 170 138 312 137 313 0.86 Phage integrase family Phage_int_SAM_4 PF13495.6 85 pCP009044_00017 - 328 0.0021 18.5 8.6 1 3 0.00012 0.42 11.1 0.3 2 50 16 68 15 84 0.72 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pCP009044_00017 - 328 0.0021 18.5 8.6 2 3 5.7e-05 0.2 12.1 0.7 12 37 86 110 80 170 0.81 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pCP009044_00017 - 328 0.0021 18.5 8.6 3 3 2.5 9e+03 -2.8 0.1 9 21 297 309 293 312 0.79 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pCP009044_00017 - 328 0.0042 17.4 0.3 1 1 6.5e-06 0.023 15.0 0.3 11 79 25 106 17 111 0.80 Phage integrase, N-terminal SAM-like domain TSNAXIP1_N PF15739.5 111 pCP009044_00017 - 328 0.11 12.8 1.6 1 1 8e-05 0.29 11.5 1.3 19 83 29 96 17 114 0.78 Translin-associated factor X-interacting N-terminus Phage_int_SAM_3 PF14659.6 58 pCP009044_00017 - 328 0.99 9.7 6.9 1 3 0.00019 0.67 10.3 0.7 7 50 13 64 8 71 0.69 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_3 PF14659.6 58 pCP009044_00017 - 328 0.99 9.7 6.9 2 3 0.16 5.9e+02 0.8 0.3 16 31 87 102 83 105 0.87 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_3 PF14659.6 58 pCP009044_00017 - 328 0.99 9.7 6.9 3 3 0.64 2.3e+03 -1.0 0.0 36 44 120 128 116 131 0.80 Phage integrase, N-terminal SAM-like domain DUF1566 PF07603.11 115 pCP009044_00018 - 117 0.0015 18.9 0.0 1 1 1.1e-07 0.0019 18.5 0.0 18 115 27 111 8 111 0.79 Protein of unknown function (DUF1566) DUF433 PF04255.14 56 pCP009044_00019 - 68 0.047 13.5 0.0 1 1 7.7e-06 0.069 13.0 0.0 24 53 14 43 5 44 0.88 Protein of unknown function (DUF433) Toxin_YhaV PF11663.8 138 pCP009044_00019 - 68 0.079 13.0 0.0 1 2 1.9e-05 0.17 11.9 0.0 112 136 9 33 2 35 0.85 Toxin with endonuclease activity, of toxin-antitoxin system Toxin_YhaV PF11663.8 138 pCP009044_00019 - 68 0.079 13.0 0.0 2 2 0.33 3e+03 -1.8 0.0 20 23 52 55 38 66 0.42 Toxin with endonuclease activity, of toxin-antitoxin system WGR PF05406.15 80 pCP009044_00023 - 82 6.7e-07 29.3 0.3 1 1 4.9e-11 8.8e-07 28.9 0.3 8 76 12 79 4 82 0.84 WGR domain DUF3951 PF13131.6 52 pCP009044_00027 - 37 0.048 13.9 0.2 1 1 2.7e-06 0.048 13.8 0.2 1 20 1 20 1 30 0.89 Protein of unknown function (DUF3951) DUF4064 PF13273.6 103 pCP009044_00028 - 108 1.1 9.6 10.9 1 1 0.026 2.4e+02 2.1 10.9 16 87 10 105 1 108 0.49 Protein of unknown function (DUF4064) DUF2929 PF11151.8 56 pCP009044_00028 - 108 2.9 8.3 8.4 1 2 0.27 2.4e+03 -1.1 1.2 36 47 10 21 2 30 0.60 Protein of unknown function (DUF2929) DUF2929 PF11151.8 56 pCP009044_00028 - 108 2.9 8.3 8.4 2 2 1.3e-05 0.12 12.7 1.0 9 55 52 102 52 103 0.84 Protein of unknown function (DUF2929) HD_2 PF12917.7 182 pCP009044_00029 - 182 0.00032 20.5 0.1 1 1 3.8e-08 0.00069 19.4 0.1 55 98 64 104 47 136 0.74 HD containing hydrolase-like enzyme CDT1 PF08839.11 175 pCP009044_00031 - 109 0.089 13.1 0.0 1 1 6.5e-06 0.12 12.7 0.0 118 168 10 60 2 64 0.91 DNA replication factor CDT1 like DUF1351 PF07083.11 210 pCP009044_00032 - 350 3.8e-24 85.6 8.0 1 2 8.4e-28 3.8e-24 85.6 8.0 2 180 18 200 17 211 0.91 Protein of unknown function (DUF1351) DUF1351 PF07083.11 210 pCP009044_00032 - 350 3.8e-24 85.6 8.0 2 2 0.25 1.1e+03 -0.8 3.6 78 116 222 260 215 293 0.75 Protein of unknown function (DUF1351) DUF4337 PF14235.6 161 pCP009044_00032 - 350 0.96 9.5 5.4 1 2 0.00047 2.1 8.4 0.7 48 110 34 96 31 114 0.80 Domain of unknown function (DUF4337) DUF4337 PF14235.6 161 pCP009044_00032 - 350 0.96 9.5 5.4 2 2 0.026 1.2e+02 2.8 0.4 72 102 218 249 202 255 0.79 Domain of unknown function (DUF4337) Allexi_40kDa PF05549.11 271 pCP009044_00032 - 350 1.6 8.2 6.9 1 2 3.4e-05 0.15 11.5 1.9 66 155 3 92 1 113 0.90 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pCP009044_00032 - 350 1.6 8.2 6.9 2 2 0.4 1.8e+03 -1.8 0.2 116 144 221 251 202 291 0.49 Allexivirus 40kDa protein KIP1 PF07765.12 74 pCP009044_00032 - 350 8.7 6.5 9.0 1 2 0.00016 0.72 10.0 1.3 9 61 75 128 69 137 0.86 KIP1-like protein KIP1 PF07765.12 74 pCP009044_00032 - 350 8.7 6.5 9.0 2 2 0.23 1e+03 -0.1 1.3 28 55 223 251 214 261 0.51 KIP1-like protein LBR_tudor PF09465.10 55 pCP009044_00033 - 90 0.036 13.9 0.2 1 1 3.2e-06 0.058 13.2 0.2 21 46 49 74 39 78 0.93 Lamin-B receptor of TUDOR domain zf-B_box PF00643.24 42 pCP009044_00034 - 166 0.006 16.7 13.5 1 2 3.8e-06 0.0062 16.7 7.5 4 37 3 38 1 43 0.85 B-box zinc finger zf-B_box PF00643.24 42 pCP009044_00034 - 166 0.006 16.7 13.5 2 2 0.055 89 3.4 0.3 24 30 66 72 57 75 0.63 B-box zinc finger FYVE PF01363.21 68 pCP009044_00034 - 166 0.026 14.6 6.7 1 1 4.1e-05 0.067 13.3 6.9 12 66 2 75 1 77 0.82 FYVE zinc finger DUF4428 PF14471.6 51 pCP009044_00034 - 166 0.069 13.1 0.1 1 2 0.72 1.2e+03 -0.5 2.8 16 26 9 20 2 37 0.76 Domain of unknown function (DUF4428) DUF4428 PF14471.6 51 pCP009044_00034 - 166 0.069 13.1 0.1 2 2 4.2e-05 0.069 13.1 0.1 20 41 65 87 49 92 0.76 Domain of unknown function (DUF4428) zf-C4_ClpX PF06689.13 39 pCP009044_00034 - 166 0.19 11.6 12.5 1 2 0.002 3.3 7.7 4.5 3 31 2 30 1 34 0.89 ClpX C4-type zinc finger zf-C4_ClpX PF06689.13 39 pCP009044_00034 - 166 0.19 11.6 12.5 2 2 0.0011 1.7 8.6 1.0 24 32 66 74 57 77 0.81 ClpX C4-type zinc finger Gin PF10764.9 45 pCP009044_00034 - 166 0.24 11.4 10.0 1 2 0.0066 11 6.1 4.6 1 29 2 34 2 37 0.88 Inhibitor of sigma-G Gin Gin PF10764.9 45 pCP009044_00034 - 166 0.24 11.4 10.0 2 2 0.0021 3.5 7.7 0.2 18 29 66 77 64 90 0.83 Inhibitor of sigma-G Gin zf-RING_2 PF13639.6 44 pCP009044_00034 - 166 0.34 11.3 9.3 1 2 0.0047 7.6 7.0 7.4 2 37 1 36 1 46 0.82 Ring finger domain zf-RING_2 PF13639.6 44 pCP009044_00034 - 166 0.34 11.3 9.3 2 2 0.038 62 4.0 0.1 16 35 54 77 43 79 0.64 Ring finger domain zf-CHY PF05495.12 75 pCP009044_00034 - 166 0.35 11.4 10.0 1 2 0.36 5.8e+02 1.1 5.8 43 63 1 23 1 28 0.65 CHY zinc finger zf-CHY PF05495.12 75 pCP009044_00034 - 166 0.35 11.4 10.0 2 2 0.00013 0.22 12.0 1.4 22 74 25 73 23 74 0.86 CHY zinc finger Ac81 PF05820.11 181 pCP009044_00034 - 166 0.92 9.0 4.8 1 2 0.002 3.3 7.2 2.3 90 119 14 47 3 59 0.71 Baculoviridae AC81 Ac81 PF05820.11 181 pCP009044_00034 - 166 0.92 9.0 4.8 2 2 0.069 1.1e+02 2.2 0.0 91 113 66 88 60 91 0.82 Baculoviridae AC81 zf-C3HC4_3 PF13920.6 50 pCP009044_00034 - 166 1.2 9.0 10.5 1 2 0.0057 9.4 6.2 5.7 4 33 1 32 1 38 0.74 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_3 PF13920.6 50 pCP009044_00034 - 166 1.2 9.0 10.5 2 2 0.012 20 5.1 0.1 24 35 66 77 45 82 0.66 Zinc finger, C3HC4 type (RING finger) zf-RING_4 PF14570.6 48 pCP009044_00034 - 166 1.5 8.7 13.2 1 2 0.0013 2.1 8.2 6.1 9 35 8 35 1 40 0.73 RING/Ubox like zinc-binding domain zf-RING_4 PF14570.6 48 pCP009044_00034 - 166 1.5 8.7 13.2 2 2 0.018 29 4.6 0.6 24 35 67 78 43 84 0.86 RING/Ubox like zinc-binding domain Tnp_zf-ribbon_2 PF13842.6 31 pCP009044_00034 - 166 8.2 7.3 10.6 1 2 0.0017 2.7 8.8 5.2 6 31 2 28 1 28 0.77 DDE_Tnp_1-like zinc-ribbon Tnp_zf-ribbon_2 PF13842.6 31 pCP009044_00034 - 166 8.2 7.3 10.6 2 2 0.52 8.5e+02 0.9 0.2 17 22 66 71 57 78 0.67 DDE_Tnp_1-like zinc-ribbon zf-ACC PF17848.1 26 pCP009044_00037 - 363 0.098 12.8 3.8 1 2 0.00089 8 6.6 0.5 19 26 85 92 83 92 0.86 Acetyl-coA carboxylase zinc finger domain zf-ACC PF17848.1 26 pCP009044_00037 - 363 0.098 12.8 3.8 2 2 0.0016 15 5.8 0.2 4 11 107 114 104 115 0.78 Acetyl-coA carboxylase zinc finger domain DZR PF12773.7 49 pCP009044_00037 - 363 6.7 6.8 10.9 1 1 0.0035 31 4.7 10.9 15 36 89 112 79 137 0.54 Double zinc ribbon Toprim_2 PF13155.6 90 pCP009044_00039 - 381 1e-14 54.7 0.0 1 2 4.8 1.7e+04 -3.7 0.0 42 55 113 126 98 127 0.62 Toprim-like Toprim_2 PF13155.6 90 pCP009044_00039 - 381 1e-14 54.7 0.0 2 2 7.6e-18 2.7e-14 53.3 0.0 1 90 285 370 285 370 0.94 Toprim-like Toprim_3 PF13362.6 95 pCP009044_00039 - 381 1.6e-08 34.8 0.0 1 1 8.3e-12 3e-08 33.9 0.0 2 90 284 371 283 374 0.79 Toprim domain zf-CHC2 PF01807.20 98 pCP009044_00039 - 381 4.3e-07 29.7 0.3 1 1 2.7e-10 9.7e-07 28.5 0.3 11 91 10 94 2 100 0.79 CHC2 zinc finger Toprim_4 PF13662.6 89 pCP009044_00039 - 381 0.0096 16.4 0.0 1 1 6.6e-06 0.024 15.1 0.0 50 84 318 352 284 356 0.83 Toprim domain DUF3854 PF12965.7 130 pCP009044_00039 - 381 0.023 14.7 0.2 1 1 8.2e-05 0.29 11.1 0.2 68 125 321 372 276 376 0.89 Domain of unknown function (DUF3854) N6_N4_Mtase PF01555.18 231 pCP009044_00040 - 291 2.4e-05 24.2 0.4 1 2 0.00012 1.1 8.9 0.0 197 223 41 67 30 69 0.87 DNA methylase N6_N4_Mtase PF01555.18 231 pCP009044_00040 - 291 2.4e-05 24.2 0.4 2 2 4.7e-06 0.042 13.5 0.2 3 116 86 228 84 287 0.64 DNA methylase DpnI_C PF17726.1 70 pCP009044_00040 - 291 0.00013 22.0 0.3 1 1 4e-08 0.00036 20.6 0.3 5 53 231 279 228 281 0.78 Dam-replacing HTH domain zf-BED PF02892.15 44 pCP009044_00041 - 113 0.042 13.9 0.0 1 1 5.4e-06 0.097 12.7 0.0 6 25 54 73 50 80 0.89 BED zinc finger DUF4258 PF14076.6 63 pCP009044_00045 - 77 0.069 13.5 0.3 1 1 9e-05 0.81 10.1 0.3 2 60 9 65 9 67 0.65 Domain of unknown function (DUF4258) Methyltransf_23 PF13489.6 165 pCP009044_00045 - 77 0.15 11.9 0.0 1 1 1.9e-05 0.17 11.7 0.0 9 45 26 60 11 69 0.82 Methyltransferase domain MPTase-PolyVal PF18818.1 126 pCP009044_00046 - 341 8.2e-48 161.6 0.0 1 1 4.1e-51 1.2e-47 161.0 0.0 2 126 160 284 159 284 0.99 Metallopeptidase superfamily domain DUF1738 PF08401.11 128 pCP009044_00046 - 341 1.1e-33 116.1 0.1 1 1 6.4e-37 1.9e-33 115.3 0.1 3 128 17 135 15 135 0.91 Domain of unknown function (DUF1738) EpmC PF04315.12 163 pCP009044_00046 - 341 0.00047 19.9 0.0 1 1 2.9e-07 0.00087 19.0 0.0 5 53 163 214 159 229 0.83 Elongation factor P hydroxylase Tox-MPTase3 PF15639.6 137 pCP009044_00046 - 341 0.0042 16.9 0.1 1 1 3.1e-06 0.0092 15.8 0.1 100 135 202 239 184 240 0.75 Metallopeptidase toxin 3 DUF4127 PF13552.6 490 pCP009044_00046 - 341 0.021 13.5 0.1 1 1 9.5e-06 0.028 13.0 0.1 123 242 199 338 189 341 0.85 Protein of unknown function (DUF4127) GP88 PF17338.2 231 pCP009044_00046 - 341 0.022 14.2 0.1 1 2 0.92 2.7e+03 -2.5 0.0 61 95 8 40 4 69 0.71 Gene product 88 GP88 PF17338.2 231 pCP009044_00046 - 341 0.022 14.2 0.1 2 2 2e-05 0.059 12.8 0.0 103 159 262 319 234 330 0.86 Gene product 88 Fucose_iso_N2 PF07882.12 180 pCP009044_00047 - 133 0.0057 16.2 0.8 1 2 0.2 1.2e+03 -1.1 0.0 144 163 16 35 10 44 0.76 L-fucose isomerase, second N-terminal domain Fucose_iso_N2 PF07882.12 180 pCP009044_00047 - 133 0.0057 16.2 0.8 2 2 1.7e-06 0.01 15.5 0.3 26 97 47 121 34 129 0.82 L-fucose isomerase, second N-terminal domain RNA_pol_Rpb8 PF03870.15 139 pCP009044_00047 - 133 0.056 13.6 0.1 1 1 1.3e-05 0.076 13.2 0.1 31 71 58 98 46 119 0.75 RNA polymerase Rpb8 s48_45 PF07422.13 108 pCP009044_00047 - 133 0.082 13.5 0.8 1 2 0.2 1.2e+03 0.1 0.0 33 44 2 13 1 21 0.77 Sexual stage antigen s48/45 domain s48_45 PF07422.13 108 pCP009044_00047 - 133 0.082 13.5 0.8 2 2 4.7e-05 0.28 11.8 0.1 25 87 46 118 22 130 0.72 Sexual stage antigen s48/45 domain RecT PF03837.14 199 pCP009044_00048 - 281 1.2e-36 126.1 0.3 1 2 2.5e-40 4.5e-36 124.2 0.0 11 192 31 202 23 210 0.91 RecT family RecT PF03837.14 199 pCP009044_00048 - 281 1.2e-36 126.1 0.3 2 2 0.037 6.6e+02 -0.4 0.1 109 156 232 278 207 280 0.58 RecT family Cas_Cas4 PF01930.17 162 pCP009044_00051 - 359 1.6e-06 28.3 0.2 1 3 5.1 1e+04 -3.6 0.7 109 141 20 52 16 61 0.50 Domain of unknown function DUF83 Cas_Cas4 PF01930.17 162 pCP009044_00051 - 359 1.6e-06 28.3 0.2 2 3 7.9e-10 1.6e-06 28.3 0.2 47 160 131 250 79 251 0.77 Domain of unknown function DUF83 Cas_Cas4 PF01930.17 162 pCP009044_00051 - 359 1.6e-06 28.3 0.2 3 3 1.5 3e+03 -1.8 0.1 120 145 279 304 256 312 0.62 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 255 pCP009044_00051 - 359 8.1e-05 22.7 1.2 1 2 6.6e-08 0.00013 22.0 0.2 101 255 111 251 14 251 0.69 PD-(D/E)XK nuclease superfamily PDDEXK_1 PF12705.7 255 pCP009044_00051 - 359 8.1e-05 22.7 1.2 2 2 0.76 1.5e+03 -1.2 0.1 85 114 284 312 258 331 0.45 PD-(D/E)XK nuclease superfamily Nsp1_C PF05064.13 116 pCP009044_00051 - 359 0.0026 17.5 0.5 1 2 2.6 5.1e+03 -2.7 0.1 11 26 35 50 24 58 0.54 Nsp1-like C-terminal region Nsp1_C PF05064.13 116 pCP009044_00051 - 359 0.0026 17.5 0.5 2 2 1.3e-06 0.0026 17.5 0.5 62 112 253 303 250 308 0.91 Nsp1-like C-terminal region GrpE PF01025.19 166 pCP009044_00051 - 359 0.011 15.4 1.7 1 2 0.26 5.1e+02 0.2 0.7 32 70 15 53 11 63 0.75 GrpE GrpE PF01025.19 166 pCP009044_00051 - 359 0.011 15.4 1.7 2 2 5.7e-06 0.011 15.4 1.7 12 65 262 315 254 324 0.90 GrpE CENP-F_leu_zip PF10473.9 140 pCP009044_00051 - 359 0.035 14.1 9.6 1 2 0.037 73 3.4 0.5 34 59 16 41 12 53 0.74 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CENP-F_leu_zip PF10473.9 140 pCP009044_00051 - 359 0.035 14.1 9.6 2 2 2.2e-05 0.043 13.8 3.0 38 99 234 295 220 302 0.89 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4407 PF14362.6 298 pCP009044_00051 - 359 0.058 12.7 1.6 1 1 5.3e-05 0.1 11.9 1.6 102 168 202 297 200 320 0.85 Domain of unknown function (DUF4407) CdvA PF18822.1 123 pCP009044_00051 - 359 0.2 11.5 8.1 1 2 0.006 12 5.7 0.9 79 104 17 42 14 59 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP009044_00051 - 359 0.2 11.5 8.1 2 2 0.00062 1.2 8.9 1.2 26 60 266 300 264 323 0.84 CdvA-like coiled-coil domain DUF615 PF04751.14 154 pCP009044_00051 - 359 1.7 8.6 7.9 1 3 3.3 6.6e+03 -3.0 0.1 43 63 29 48 17 72 0.53 Protein of unknown function (DUF615) DUF615 PF04751.14 154 pCP009044_00051 - 359 1.7 8.6 7.9 2 3 0.53 1.1e+03 -0.5 0.1 53 74 214 235 171 243 0.64 Protein of unknown function (DUF615) DUF615 PF04751.14 154 pCP009044_00051 - 359 1.7 8.6 7.9 3 3 8.7e-05 0.17 11.8 1.5 14 64 263 316 261 353 0.80 Protein of unknown function (DUF615) CHASE3 PF05227.13 138 pCP009044_00051 - 359 6.7 6.6 8.3 1 3 0.087 1.7e+02 2.0 0.0 40 120 14 91 11 109 0.64 CHASE3 domain CHASE3 PF05227.13 138 pCP009044_00051 - 359 6.7 6.6 8.3 2 3 2.4 4.8e+03 -2.6 0.3 81 100 215 234 207 239 0.48 CHASE3 domain CHASE3 PF05227.13 138 pCP009044_00051 - 359 6.7 6.6 8.3 3 3 0.00075 1.5 8.7 0.7 45 95 254 304 252 320 0.82 CHASE3 domain SSB PF00436.25 104 pCP009044_00053 - 175 1.8e-29 101.9 0.2 1 1 3.6e-33 3.2e-29 101.0 0.2 2 104 3 105 2 105 0.99 Single-strand binding protein family Pex14_N PF04695.13 157 pCP009044_00053 - 175 0.29 11.8 7.3 1 1 5.1e-05 0.46 11.1 7.3 63 126 96 161 74 169 0.50 Peroxisomal membrane anchor protein (Pex14p) conserved region Toxin-JAB1 PF15659.6 86 pCP009044_00054 - 79 0.088 13.2 0.0 1 1 5.9e-06 0.11 12.9 0.0 32 83 14 66 4 69 0.79 JAB-like toxin 1 Dus PF01207.17 310 pCP009044_00058 - 158 0.03 13.4 0.1 1 1 2.2e-06 0.04 13.0 0.1 93 155 53 115 33 116 0.92 Dihydrouridine synthase (Dus) SLT PF01464.20 117 pCP009044_00059 - 142 4.6e-19 68.2 0.0 1 1 6.8e-23 6.1e-19 67.8 0.0 2 96 21 117 20 123 0.95 Transglycosylase SLT domain Lys PF00062.20 124 pCP009044_00059 - 142 0.012 15.8 0.0 1 1 2.1e-06 0.019 15.2 0.0 30 61 38 69 24 83 0.88 C-type lysozyme/alpha-lactalbumin family DUF480 PF04337.12 149 pCP009044_00060 - 103 0.0017 18.4 0.1 1 1 2.1e-07 0.0019 18.3 0.1 68 148 3 83 1 84 0.90 Protein of unknown function, DUF480 RdRP_1 PF00680.20 482 pCP009044_00060 - 103 0.027 13.0 0.1 1 1 3.4e-06 0.03 12.8 0.1 48 121 11 85 2 98 0.84 RNA dependent RNA polymerase DUF3267 PF11667.8 108 pCP009044_00061 - 186 0.042 14.1 8.6 1 2 0.46 4.1e+03 -1.9 0.0 62 84 11 39 5 44 0.51 Putative zincin peptidase DUF3267 PF11667.8 108 pCP009044_00061 - 186 0.042 14.1 8.6 2 2 6e-06 0.053 13.8 5.1 6 98 43 154 38 159 0.78 Putative zincin peptidase Peptidase_M50B PF13398.6 200 pCP009044_00061 - 186 0.14 11.8 7.8 1 1 0.00027 2.4 7.7 7.7 16 52 31 69 9 184 0.65 Peptidase M50B-like GGDEF PF00990.21 161 pCP009044_00062 - 800 5e-34 117.4 0.6 1 1 4.5e-37 1.1e-33 116.2 0.6 12 161 420 567 417 567 0.89 Diguanylate cyclase, GGDEF domain HD PF01966.22 122 pCP009044_00062 - 800 2.7e-05 24.4 0.4 1 4 3.9 9.9e+03 -3.3 0.0 77 98 97 125 81 148 0.62 HD domain HD PF01966.22 122 pCP009044_00062 - 800 2.7e-05 24.4 0.4 2 4 1.1e-08 2.7e-05 24.4 0.4 2 95 226 322 225 383 0.71 HD domain HD PF01966.22 122 pCP009044_00062 - 800 2.7e-05 24.4 0.4 3 4 1.2 3.2e+03 -1.7 0.1 57 113 530 592 507 596 0.60 HD domain HD PF01966.22 122 pCP009044_00062 - 800 2.7e-05 24.4 0.4 4 4 1.9 4.9e+03 -2.3 0.0 64 95 689 722 647 736 0.74 HD domain SporV_AA PF12164.8 89 pCP009044_00062 - 800 0.039 14.3 4.1 1 3 2.2e-05 0.057 13.8 0.2 8 48 92 132 91 153 0.85 Stage V sporulation protein AA SporV_AA PF12164.8 89 pCP009044_00062 - 800 0.039 14.3 4.1 2 3 1.1 2.8e+03 -1.3 0.1 16 45 391 420 383 430 0.84 Stage V sporulation protein AA SporV_AA PF12164.8 89 pCP009044_00062 - 800 0.039 14.3 4.1 3 3 1 2.6e+03 -1.1 0.0 33 56 548 570 539 572 0.72 Stage V sporulation protein AA STAR_dimer PF16544.5 53 pCP009044_00062 - 800 0.044 13.4 0.3 1 2 5.6e-05 0.14 11.7 0.1 16 37 150 172 146 173 0.78 Homodimerisation region of STAR domain protein STAR_dimer PF16544.5 53 pCP009044_00062 - 800 0.044 13.4 0.3 2 2 4.5 1.2e+04 -4.0 0.0 12 26 408 422 407 423 0.81 Homodimerisation region of STAR domain protein Toxin-deaminase PF14424.6 142 pCP009044_00062 - 800 0.045 13.9 0.6 1 3 1.7e-05 0.045 13.9 0.6 11 116 91 200 86 209 0.88 The BURPS668_1122 family of deaminases Toxin-deaminase PF14424.6 142 pCP009044_00062 - 800 0.045 13.9 0.6 2 3 1.6 4e+03 -2.2 0.2 33 57 376 398 349 444 0.60 The BURPS668_1122 family of deaminases Toxin-deaminase PF14424.6 142 pCP009044_00062 - 800 0.045 13.9 0.6 3 3 0.01 26 4.9 3.4 40 106 613 683 575 692 0.76 The BURPS668_1122 family of deaminases Stealth_CR4 PF17103.5 55 pCP009044_00062 - 800 0.081 12.8 0.1 1 2 0.0024 6.1 6.8 0.0 3 31 355 387 353 388 0.73 Stealth protein CR4, conserved region 4 Stealth_CR4 PF17103.5 55 pCP009044_00062 - 800 0.081 12.8 0.1 2 2 0.041 1e+02 2.9 0.0 9 34 451 477 448 479 0.79 Stealth protein CR4, conserved region 4 SurA_N_2 PF13623.6 145 pCP009044_00062 - 800 4.1 7.3 12.7 1 4 0.043 1.1e+02 2.6 0.1 11 83 69 145 62 165 0.72 SurA N-terminal domain SurA_N_2 PF13623.6 145 pCP009044_00062 - 800 4.1 7.3 12.7 2 4 0.0009 2.3 8.1 0.5 69 109 379 419 353 453 0.80 SurA N-terminal domain SurA_N_2 PF13623.6 145 pCP009044_00062 - 800 4.1 7.3 12.7 3 4 0.022 56 3.6 0.0 50 70 500 520 472 532 0.84 SurA N-terminal domain SurA_N_2 PF13623.6 145 pCP009044_00062 - 800 4.1 7.3 12.7 4 4 6 1.5e+04 -4.3 0.6 66 86 606 626 601 633 0.49 SurA N-terminal domain TrwB_AAD_bind PF10412.9 386 pCP009044_00063 - 458 5.1e-16 58.6 0.0 1 2 2.1e-09 3.1e-06 26.3 0.0 15 55 49 89 40 210 0.88 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP009044_00063 - 458 5.1e-16 58.6 0.0 2 2 1.1e-10 1.7e-07 30.5 0.0 213 324 278 388 213 402 0.84 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 469 pCP009044_00063 - 458 2e-11 43.4 0.6 1 1 1.9e-14 2.8e-11 42.9 0.6 44 385 35 388 5 421 0.79 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP009044_00063 - 458 4.3e-10 39.7 0.0 1 1 5.6e-13 8.3e-10 38.7 0.0 1 83 309 390 309 421 0.93 TraM recognition site of TraD and TraG DUF87 PF01935.17 227 pCP009044_00063 - 458 0.0005 20.2 0.3 1 1 3e-06 0.0045 17.1 0.3 24 206 50 268 43 292 0.48 Helicase HerA, central domain Zeta_toxin PF06414.12 199 pCP009044_00063 - 458 0.0014 17.9 0.0 1 1 2.4e-06 0.0035 16.6 0.0 9 51 43 85 35 87 0.82 Zeta toxin AAA_16 PF13191.6 170 pCP009044_00063 - 458 0.0017 18.8 0.0 1 1 2.9e-06 0.0043 17.5 0.0 16 50 41 76 32 108 0.75 AAA ATPase domain ATPase_2 PF01637.18 233 pCP009044_00063 - 458 0.0022 18.0 0.0 1 2 6.9e-06 0.01 15.8 0.0 15 58 44 87 35 132 0.83 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pCP009044_00063 - 458 0.0022 18.0 0.0 2 2 2.3 3.5e+03 -2.3 0.0 93 93 283 283 187 332 0.59 ATPase domain predominantly from Archaea DUF853 PF05872.12 504 pCP009044_00063 - 458 0.0045 15.6 0.0 1 1 5.5e-06 0.0082 14.8 0.0 18 71 44 99 29 119 0.77 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 362 pCP009044_00063 - 458 0.0054 15.7 0.1 1 3 8.3e-05 0.12 11.2 0.0 20 67 48 95 36 133 0.79 AAA-like domain AAA_10 PF12846.7 362 pCP009044_00063 - 458 0.0054 15.7 0.1 2 3 2.6 3.9e+03 -3.6 0.0 130 167 197 239 188 254 0.40 AAA-like domain AAA_10 PF12846.7 362 pCP009044_00063 - 458 0.0054 15.7 0.1 3 3 0.062 93 1.8 0.0 264 306 327 376 324 387 0.71 AAA-like domain AAA_22 PF13401.6 137 pCP009044_00063 - 458 0.011 16.1 0.0 1 1 2.4e-05 0.036 14.3 0.0 5 29 49 73 45 108 0.80 AAA domain FtsK_SpoIIIE PF01580.18 243 pCP009044_00063 - 458 0.095 12.0 0.0 1 1 0.00013 0.2 11.0 0.0 38 60 48 70 22 101 0.82 FtsK/SpoIIIE family AAA_19 PF13245.6 146 pCP009044_00063 - 458 0.11 12.8 0.0 1 2 0.00022 0.34 11.3 0.0 10 33 49 72 42 87 0.85 AAA domain AAA_19 PF13245.6 146 pCP009044_00063 - 458 0.11 12.8 0.0 2 2 8.5 1.3e+04 -3.6 0.0 96 111 302 317 271 328 0.68 AAA domain HD_5 PF13487.6 64 pCP009044_00064 - 193 4.6e-06 26.8 0.0 1 1 4.6e-10 8.2e-06 26.0 0.0 1 50 78 125 78 127 0.95 HD domain CLP_protease PF00574.23 182 pCP009044_00066 - 229 0.15 12.0 0.3 1 1 1.7e-05 0.3 10.9 0.3 121 166 61 107 55 118 0.82 Clp protease GA-like PF17573.2 50 pCP009044_00067 - 74 0.035 14.0 0.4 1 2 2.2e-05 0.19 11.6 0.1 15 32 5 22 1 28 0.90 GA-like domain GA-like PF17573.2 50 pCP009044_00067 - 74 0.035 14.0 0.4 2 2 0.066 5.9e+02 0.5 0.0 16 24 44 52 40 59 0.72 GA-like domain Orthopox_A49R PF06489.11 162 pCP009044_00067 - 74 0.16 12.2 0.0 1 1 1.8e-05 0.16 12.2 0.0 69 104 31 66 5 72 0.86 Orthopoxvirus A49R protein HTH_3 PF01381.22 55 pCP009044_00068 - 76 2.7e-14 52.9 0.0 1 1 2e-17 3.3e-14 52.7 0.0 1 55 14 68 14 68 0.99 Helix-turn-helix HTH_19 PF12844.7 65 pCP009044_00068 - 76 7.9e-13 48.2 0.0 1 1 5.4e-16 8.8e-13 48.1 0.0 1 64 11 73 11 74 0.95 Helix-turn-helix domain HTH_31 PF13560.6 64 pCP009044_00068 - 76 8.3e-08 32.5 0.0 1 1 5.4e-11 8.8e-08 32.4 0.0 1 40 9 48 9 66 0.89 Helix-turn-helix domain HTH_25 PF13413.6 62 pCP009044_00068 - 76 0.0011 18.8 0.0 1 1 9.1e-07 0.0015 18.4 0.0 2 34 14 46 13 51 0.94 Helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP009044_00068 - 76 0.0028 17.7 0.0 1 1 2.6e-06 0.0043 17.1 0.0 2 64 13 75 12 76 0.92 Bacteriophage CI repressor helix-turn-helix domain Pou PF00157.17 72 pCP009044_00068 - 76 0.026 14.5 0.1 1 1 2.3e-05 0.037 14.0 0.1 3 34 4 35 2 44 0.86 Pou domain - N-terminal to homeobox domain HTH_37 PF13744.6 80 pCP009044_00068 - 76 0.047 13.7 0.0 1 1 3.2e-05 0.052 13.5 0.0 21 54 12 45 2 57 0.86 Helix-turn-helix domain MqsA_antitoxin PF15731.5 131 pCP009044_00068 - 76 0.055 13.6 0.0 1 1 3.9e-05 0.064 13.4 0.0 71 117 11 57 3 67 0.89 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_23 PF13384.6 50 pCP009044_00068 - 76 0.064 13.1 0.0 1 2 8.8e-05 0.14 12.0 0.0 10 37 14 42 12 50 0.84 Homeodomain-like domain HTH_23 PF13384.6 50 pCP009044_00068 - 76 0.064 13.1 0.0 2 2 2.7 4.5e+03 -2.3 0.0 25 33 59 67 56 68 0.77 Homeodomain-like domain WYL_3 PF18488.1 63 pCP009044_00068 - 76 0.081 13.3 0.0 1 1 7.6e-05 0.12 12.7 0.0 8 41 14 49 10 51 0.79 WYL domain YdaS_antitoxin PF15943.5 65 pCP009044_00068 - 76 0.1 12.4 0.0 1 1 8.3e-05 0.14 12.1 0.0 9 41 23 55 14 66 0.78 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT SNase PF00565.17 108 pCP009044_00069 - 172 4.4e-17 62.5 0.1 1 1 3.1e-21 5.5e-17 62.2 0.1 2 107 43 161 42 162 0.91 Staphylococcal nuclease homologue AAA_25 PF13481.6 194 pCP009044_00072 - 389 5.9e-17 61.9 0.0 1 1 1.1e-20 9.6e-17 61.2 0.0 20 193 154 319 144 320 0.83 AAA domain DnaB PF00772.21 103 pCP009044_00072 - 389 1.3e-06 28.4 0.3 1 1 3.2e-10 2.9e-06 27.3 0.3 4 101 7 95 4 97 0.85 DnaB-like helicase N terminal domain Thioredoxin_2 PF13098.6 109 pCP009044_00073 - 139 2.7e-05 24.6 0.2 1 1 3.7e-08 0.00022 21.6 0.2 1 109 33 126 33 126 0.75 Thioredoxin-like domain Thioredoxin_7 PF13899.6 83 pCP009044_00073 - 139 3.2e-05 24.0 0.0 1 1 7.1e-09 4.3e-05 23.6 0.0 8 83 28 104 22 104 0.80 Thioredoxin-like Thioredox_DsbH PF03190.15 163 pCP009044_00073 - 139 0.00012 22.1 0.1 1 1 5.1e-08 0.0003 20.8 0.1 28 79 28 79 23 111 0.90 Protein of unknown function, DUF255 VSG_B PF13206.6 356 pCP009044_00074 - 61 0.018 14.3 0.9 1 1 3e-06 0.018 14.3 0.9 124 177 4 57 1 61 0.86 Trypanosomal VSG domain HSCB_C PF07743.13 76 pCP009044_00074 - 61 0.019 15.5 2.0 1 1 3.4e-06 0.021 15.3 2.0 10 57 1 50 1 58 0.83 HSCB C-terminal oligomerisation domain YtxH PF12732.7 75 pCP009044_00074 - 61 0.034 14.7 0.1 1 1 7.6e-06 0.045 14.3 0.1 30 71 3 44 1 46 0.89 YtxH-like protein TrbC_Ftype PF09673.10 112 pCP009044_00075 - 313 9.3e-17 61.1 0.0 1 1 2.4e-20 2.2e-16 59.9 0.0 1 112 159 288 159 288 0.87 Type-F conjugative transfer system pilin assembly protein DUF3388 PF11868.8 190 pCP009044_00075 - 313 0.035 13.4 0.2 1 2 0.051 4.6e+02 0.0 0.1 92 134 93 136 87 141 0.82 Protein of unknown function (DUF3388) DUF3388 PF11868.8 190 pCP009044_00075 - 313 0.035 13.4 0.2 2 2 3e-05 0.27 10.5 0.0 79 132 155 209 152 213 0.82 Protein of unknown function (DUF3388) EAL PF00563.20 238 pCP009044_00076 - 262 3.4e-28 98.8 0.0 1 1 2.5e-32 4.6e-28 98.4 0.0 3 238 32 253 30 253 0.84 EAL domain TraU PF06834.11 307 pCP009044_00077 - 331 8.2e-100 334.0 0.4 1 1 5.2e-104 9.4e-100 333.8 0.4 2 306 34 330 33 331 0.95 TraU protein TraF PF13728.6 224 pCP009044_00079 - 255 3e-30 105.7 10.7 1 1 5.8e-34 3.5e-30 105.5 10.7 1 222 29 241 29 243 0.88 F plasmid transfer operon protein KaiB PF07689.12 82 pCP009044_00079 - 255 0.055 13.2 0.2 1 2 0.025 1.5e+02 2.2 0.1 6 43 86 123 82 127 0.87 KaiB domain KaiB PF07689.12 82 pCP009044_00079 - 255 0.055 13.2 0.2 2 2 0.00025 1.5 8.6 0.0 26 53 183 210 164 211 0.79 KaiB domain ASC PF00858.24 443 pCP009044_00079 - 255 0.72 8.7 5.6 1 1 0.00015 0.91 8.4 5.6 95 212 36 197 14 235 0.61 Amiloride-sensitive sodium channel TraG_N PF07916.11 467 pCP009044_00080 - 1166 1.7e-51 175.6 17.8 1 3 1.9e-55 1.7e-51 175.6 17.8 2 466 23 474 22 475 0.85 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pCP009044_00080 - 1166 1.7e-51 175.6 17.8 2 3 0.018 1.6e+02 0.9 6.0 215 337 504 625 495 628 0.60 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pCP009044_00080 - 1166 1.7e-51 175.6 17.8 3 3 0.8 7.2e+03 -4.5 1.4 252 299 684 730 670 749 0.43 TraG-like protein, N-terminal region CdiI_2 PF18593.1 91 pCP009044_00080 - 1166 0.18 12.5 0.8 1 2 0.0012 11 6.7 0.4 26 74 910 959 904 963 0.88 CdiI immunity protein CdiI_2 PF18593.1 91 pCP009044_00080 - 1166 0.18 12.5 0.8 2 2 0.015 1.3e+02 3.3 0.0 10 45 962 999 956 1003 0.91 CdiI immunity protein YfhO PF09586.10 839 pCP009044_00081 - 100 0.016 13.5 2.6 1 1 3.1e-06 0.018 13.3 2.6 185 264 18 94 10 97 0.84 Bacterial membrane protein YfhO DUF1189 PF06691.11 244 pCP009044_00081 - 100 0.017 14.7 2.0 1 1 3.4e-06 0.02 14.5 2.0 20 62 12 57 2 99 0.69 Protein of unknown function (DUF1189) Herpes_LMP1 PF05297.11 386 pCP009044_00081 - 100 0.068 12.4 3.2 1 1 1.4e-05 0.083 12.1 3.2 24 75 17 72 11 78 0.79 Herpesvirus latent membrane protein 1 (LMP1) RHH_3 PF12651.7 44 pCP009044_00082 - 100 0.0013 18.6 1.3 1 2 0.9 8e+03 -3.1 0.0 9 17 22 30 19 32 0.59 Ribbon-helix-helix domain RHH_3 PF12651.7 44 pCP009044_00082 - 100 0.0013 18.6 1.3 2 2 3.1e-07 0.0028 17.6 0.8 3 37 43 77 41 78 0.92 Ribbon-helix-helix domain DUF5123 PF17161.4 115 pCP009044_00082 - 100 0.058 14.5 0.9 1 1 7.6e-06 0.068 14.2 0.9 22 79 12 70 3 89 0.74 Domain of unknown function (DUF5123) UvrB_inter PF17757.1 91 pCP009044_00083 - 198 0.052 13.7 0.2 1 1 7.7e-06 0.14 12.4 0.2 2 73 6 75 5 90 0.84 UvrB interaction domain ALP_N PF17989.1 147 pCP009044_00085 - 305 5.9e-15 55.7 0.1 1 1 1.9e-18 1.1e-14 54.8 0.1 1 147 11 144 11 144 0.78 Actin like proteins N terminal domain FtsA PF14450.6 103 pCP009044_00085 - 305 0.00012 22.5 0.1 1 2 0.0031 19 5.8 0.0 1 17 10 26 10 41 0.87 Cell division protein FtsA FtsA PF14450.6 103 pCP009044_00085 - 305 0.00012 22.5 0.1 2 2 5.2e-06 0.031 14.7 0.0 1 52 159 214 159 293 0.75 Cell division protein FtsA DUF2800 PF10926.8 363 pCP009044_00085 - 305 0.12 11.6 0.1 1 2 0.27 1.6e+03 -2.0 0.0 287 322 101 135 86 144 0.79 Protein of unknown function (DUF2800) DUF2800 PF10926.8 363 pCP009044_00085 - 305 0.12 11.6 0.1 2 2 6.1e-05 0.37 10.0 0.1 49 107 203 268 184 270 0.72 Protein of unknown function (DUF2800) DBR1 PF05011.13 139 pCP009044_00086 - 97 0.0072 16.8 1.1 1 1 4.5e-07 0.0081 16.6 1.1 67 128 32 93 6 95 0.78 Lariat debranching enzyme, C-terminal domain DUF3400 PF11880.8 45 pCP009044_00087 - 179 0.1 12.1 0.1 1 1 2.3e-05 0.2 11.2 0.1 11 37 100 125 93 128 0.86 Domain of unknown function (DUF3400) DUF2786 PF10979.8 40 pCP009044_00087 - 179 0.18 11.8 1.3 1 1 4.1e-05 0.37 10.7 1.3 4 37 10 42 7 45 0.89 Protein of unknown function (DUF2786) Acetyltransf_9 PF13527.7 128 pCP009044_00088 - 90 0.099 12.7 0.0 1 1 9.1e-06 0.16 12.0 0.0 78 112 4 38 1 73 0.90 Acetyltransferase (GNAT) domain Ring_hydroxyl_B PF00866.18 144 pCP009044_00089 - 107 0.15 12.1 0.0 1 1 1.2e-05 0.22 11.6 0.0 75 110 10 47 5 54 0.84 Ring hydroxylating beta subunit SSXT PF05030.12 62 pCP009044_00090 - 121 0.022 14.4 0.0 1 1 8.3e-06 0.037 13.6 0.0 4 26 27 49 24 77 0.89 SSXT protein (N-terminal region) NMT PF01233.19 160 pCP009044_00090 - 121 0.092 12.6 0.6 1 1 2.5e-05 0.11 12.3 0.6 11 45 5 39 1 109 0.88 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain bZIP_2 PF07716.15 54 pCP009044_00090 - 121 0.13 12.4 0.3 1 2 2.8e-05 0.13 12.4 0.3 23 52 21 50 19 52 0.92 Basic region leucine zipper bZIP_2 PF07716.15 54 pCP009044_00090 - 121 0.13 12.4 0.3 2 2 2 9.1e+03 -3.2 0.2 31 33 67 69 60 76 0.47 Basic region leucine zipper BfiI_DBD PF18243.1 164 pCP009044_00090 - 121 0.17 11.5 0.0 1 1 4.5e-05 0.2 11.2 0.0 28 54 48 74 23 88 0.78 Metal-independent restriction enzyme BfiI DNA binding domain AbiH PF14253.6 267 pCP009044_00092 - 141 0.023 14.6 1.3 1 1 3.3e-06 0.03 14.2 1.3 105 182 25 123 2 140 0.57 Bacteriophage abortive infection AbiH PH_12 PF16457.5 134 pCP009044_00092 - 141 0.1 13.1 0.2 1 2 9.3e-05 0.83 10.2 0.1 90 134 7 59 2 59 0.70 Pleckstrin homology domain PH_12 PF16457.5 134 pCP009044_00092 - 141 0.1 13.1 0.2 2 2 0.072 6.4e+02 0.8 0.0 121 133 95 107 76 108 0.86 Pleckstrin homology domain ANT PF03374.14 108 pCP009044_00093 - 70 0.041 14.2 0.0 1 1 7.5e-06 0.045 14.1 0.0 24 83 11 68 6 70 0.91 Phage antirepressor protein KilAC domain PhetRS_B1 PF18262.1 83 pCP009044_00093 - 70 0.062 13.5 0.2 1 1 1.3e-05 0.076 13.2 0.2 4 48 20 64 18 70 0.85 Phe-tRNA synthetase beta subunit B1 domain HTH_28 PF13518.6 52 pCP009044_00093 - 70 0.1 12.7 0.0 1 1 2.5e-05 0.15 12.2 0.0 11 33 9 31 5 33 0.87 Helix-turn-helix domain TMEM51 PF15345.6 238 pCP009044_00094 - 55 0.11 12.3 0.0 1 1 6.4e-06 0.12 12.3 0.0 66 97 5 38 3 50 0.80 Transmembrane protein 51 AAA_19 PF13245.6 146 pCP009044_00095 - 484 2.8e-13 50.4 0.0 1 1 4.2e-16 7.5e-13 49.0 0.0 1 146 7 233 7 233 0.86 AAA domain UvrD-helicase PF00580.21 315 pCP009044_00095 - 484 4.2e-13 49.5 7.9 1 2 2.1e-11 3.8e-08 33.2 2.3 254 303 190 236 3 240 0.66 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 pCP009044_00095 - 484 4.2e-13 49.5 7.9 2 2 0.49 8.8e+02 -0.8 0.3 172 199 375 402 287 479 0.64 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 349 pCP009044_00095 - 484 3.2e-12 46.5 2.8 1 2 0.45 8.1e+02 -0.9 0.0 264 294 45 76 31 77 0.80 UvrD-like helicase C-terminal domain UvrD_C PF13361.6 349 pCP009044_00095 - 484 3.2e-12 46.5 2.8 2 2 6.5e-15 1.2e-11 44.7 1.9 236 344 347 463 292 465 0.75 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 52 pCP009044_00095 - 484 5.1e-09 35.8 0.0 1 2 1.1 2e+03 -1.3 0.0 14 28 14 28 13 48 0.80 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 52 pCP009044_00095 - 484 5.1e-09 35.8 0.0 2 2 1.6e-11 2.9e-08 33.4 0.0 5 51 408 463 405 463 0.84 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 234 pCP009044_00095 - 484 1.1e-08 35.1 0.7 1 4 0.0092 17 5.1 0.0 2 23 20 44 19 82 0.70 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 pCP009044_00095 - 484 1.1e-08 35.1 0.7 2 4 3.4 6.1e+03 -3.3 0.0 121 145 108 131 101 154 0.67 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 pCP009044_00095 - 484 1.1e-08 35.1 0.7 3 4 3.1e-06 0.0055 16.5 0.0 45 141 176 265 156 313 0.76 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 pCP009044_00095 - 484 1.1e-08 35.1 0.7 4 4 0.00026 0.47 10.2 0.0 183 231 395 462 309 464 0.74 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 192 pCP009044_00095 - 484 0.00014 21.6 0.1 1 3 1.3e-06 0.0023 17.7 0.0 2 68 3 64 2 97 0.74 AAA domain AAA_30 PF13604.6 192 pCP009044_00095 - 484 0.00014 21.6 0.1 2 3 0.55 9.9e+02 -0.7 0.0 90 127 194 227 166 260 0.73 AAA domain AAA_30 PF13604.6 192 pCP009044_00095 - 484 0.00014 21.6 0.1 3 3 0.42 7.6e+02 -0.3 0.0 148 175 371 398 359 410 0.83 AAA domain PhoH PF02562.16 205 pCP009044_00095 - 484 0.00093 18.7 0.0 1 2 0.0086 16 4.9 0.0 6 34 4 31 1 54 0.81 PhoH-like protein PhoH PF02562.16 205 pCP009044_00095 - 484 0.00093 18.7 0.0 2 2 0.0001 0.18 11.2 0.0 122 181 195 248 190 267 0.74 PhoH-like protein ResIII PF04851.15 171 pCP009044_00095 - 484 0.011 15.7 5.8 1 2 1.5e-05 0.027 14.5 1.5 25 141 17 201 1 236 0.68 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP009044_00095 - 484 0.011 15.7 5.8 2 2 0.18 3.3e+02 1.2 0.2 97 140 363 409 323 431 0.59 Type III restriction enzyme, res subunit AAA_11 PF13086.6 261 pCP009044_00095 - 484 0.017 15.0 0.3 1 3 0.0034 6.1 6.6 0.0 18 56 17 63 3 68 0.65 AAA domain AAA_11 PF13086.6 261 pCP009044_00095 - 484 0.017 15.0 0.3 2 3 0.018 31 4.2 0.0 210 253 185 227 179 227 0.84 AAA domain AAA_11 PF13086.6 261 pCP009044_00095 - 484 0.017 15.0 0.3 3 3 0.3 5.4e+02 0.2 0.1 124 182 380 435 331 452 0.55 AAA domain OMPdecase PF00215.24 225 pCP009044_00095 - 484 0.11 12.1 0.1 1 2 0.063 1.1e+02 2.2 0.0 88 133 17 63 4 97 0.81 Orotidine 5'-phosphate decarboxylase / HUMPS family OMPdecase PF00215.24 225 pCP009044_00095 - 484 0.11 12.1 0.1 2 2 0.0015 2.7 7.5 0.0 64 144 351 478 350 481 0.89 Orotidine 5'-phosphate decarboxylase / HUMPS family RNase_T PF00929.24 165 pCP009044_00097 - 100 0.036 14.6 0.1 1 1 2.3e-06 0.04 14.4 0.1 58 116 12 69 2 89 0.79 Exonuclease DUF1722 PF08349.11 117 pCP009044_00098 - 67 0.11 12.8 0.0 1 1 7e-06 0.13 12.6 0.0 36 96 4 64 2 66 0.90 Protein of unknown function (DUF1722) DUF460 PF04312.13 141 pCP009044_00100 - 144 0.1 12.3 0.0 1 1 7.4e-06 0.13 11.9 0.0 46 97 6 61 3 86 0.77 Protein of unknown function (DUF460) DUF5643 PF18705.1 115 pCP009044_00103 - 84 0.13 12.3 0.0 1 1 8.9e-06 0.16 12.0 0.0 47 80 30 56 9 64 0.66 Family of unknown function (DUF5643) MrpF_PhaF PF04066.13 53 pCP009044_00106 - 93 0.01 16.2 1.3 1 2 2.2e-06 0.01 16.2 1.3 33 49 4 20 1 22 0.94 Multiple resistance and pH regulation protein F (MrpF / PhaF) MrpF_PhaF PF04066.13 53 pCP009044_00106 - 93 0.01 16.2 1.3 2 2 1 4.6e+03 -1.9 2.4 45 45 56 56 38 78 0.61 Multiple resistance and pH regulation protein F (MrpF / PhaF) UPF0242 PF06785.11 193 pCP009044_00106 - 93 0.026 14.6 1.1 1 1 6.2e-06 0.028 14.5 1.1 25 62 24 79 3 91 0.82 Uncharacterised protein family (UPF0242) N-terminus UPF0016 PF01169.19 75 pCP009044_00106 - 93 0.039 14.3 7.1 1 2 2e-05 0.089 13.1 0.8 35 75 5 56 3 56 0.92 Uncharacterized protein family UPF0016 UPF0016 PF01169.19 75 pCP009044_00106 - 93 0.039 14.3 7.1 2 2 0.01 47 4.4 1.5 29 51 57 79 56 92 0.79 Uncharacterized protein family UPF0016 TrbC PF04956.13 99 pCP009044_00106 - 93 1.2 9.4 11.4 1 1 0.00029 1.3 9.3 11.4 15 99 5 88 1 88 0.85 TrbC/VIRB2 family TraL PF07178.11 90 pCP009044_00107 - 100 2.4e-12 47.2 1.0 1 1 3.1e-16 2.7e-12 47.0 1.0 2 90 9 98 8 98 0.86 TraL protein ThrE PF06738.12 241 pCP009044_00107 - 100 0.024 14.0 0.3 1 1 2.9e-06 0.026 13.9 0.3 99 163 14 78 4 83 0.87 Putative threonine/serine exporter TraE PF05309.11 182 pCP009044_00108 - 187 2e-34 118.5 1.7 1 1 2.8e-38 2.5e-34 118.3 1.7 2 180 2 180 1 181 0.96 TraE protein MadM PF03818.13 59 pCP009044_00108 - 187 0.047 13.6 0.2 1 1 1.4e-05 0.12 12.2 0.2 13 38 22 47 17 49 0.93 Malonate/sodium symporter MadM subunit TraK PF06586.11 231 pCP009044_00109 - 257 9.5e-24 84.4 3.7 1 1 4e-27 3.6e-23 82.5 3.7 6 206 5 218 3 233 0.88 TraK protein NusG_II PF07009.11 107 pCP009044_00109 - 257 0.32 11.2 4.5 1 2 1.5e-05 0.13 12.4 0.6 4 73 7 85 4 95 0.67 NusG domain II NusG_II PF07009.11 107 pCP009044_00109 - 257 0.32 11.2 4.5 2 2 0.13 1.2e+03 -0.3 0.1 27 64 188 206 148 238 0.61 NusG domain II TrbI PF03743.14 187 pCP009044_00110 - 427 3.5e-33 115.0 1.1 1 1 2.2e-36 4.8e-33 114.6 1.1 2 186 207 408 206 409 0.94 Bacterial conjugation TrbI-like protein Bap31_Bap29_C PF18035.1 50 pCP009044_00110 - 427 0.0036 17.3 1.3 1 1 4.8e-06 0.011 15.7 1.3 16 42 78 111 62 120 0.79 Bap31/Bap29 cytoplasmic coiled-coil domain HALZ PF02183.18 43 pCP009044_00110 - 427 0.0052 17.0 2.6 1 1 4.7e-06 0.01 16.0 2.6 19 41 84 106 83 107 0.91 Homeobox associated leucine zipper bZIP_1 PF00170.21 64 pCP009044_00110 - 427 0.0093 16.1 2.9 1 1 1.2e-05 0.027 14.6 2.9 33 62 84 113 80 115 0.93 bZIP transcription factor UPF0242 PF06785.11 193 pCP009044_00110 - 427 0.046 13.8 1.5 1 1 3.7e-05 0.083 13.0 1.5 36 134 29 131 17 134 0.65 Uncharacterised protein family (UPF0242) N-terminus DivIC PF04977.15 80 pCP009044_00110 - 427 0.094 12.5 3.1 1 1 0.0001 0.23 11.2 3.1 18 54 78 114 74 120 0.80 Septum formation initiator FAD-SLDH PF12318.8 161 pCP009044_00110 - 427 0.13 12.3 0.8 1 2 0.00012 0.26 11.3 0.2 48 102 72 126 27 132 0.82 Membrane bound FAD containing D-sorbitol dehydrogenase FAD-SLDH PF12318.8 161 pCP009044_00110 - 427 0.13 12.3 0.8 2 2 2.1 4.8e+03 -2.5 0.0 106 125 317 337 309 354 0.73 Membrane bound FAD containing D-sorbitol dehydrogenase YabA PF06156.13 102 pCP009044_00110 - 427 0.19 12.4 1.5 1 1 0.00021 0.48 11.1 1.5 20 66 75 121 62 133 0.70 Initiation control protein YabA Thioredoxin_2 PF13098.6 109 pCP009044_00111 - 271 3.3e-16 59.7 0.1 1 1 3.7e-19 6.6e-16 58.7 0.1 3 100 135 254 133 263 0.92 Thioredoxin-like domain DsbC_N PF10411.9 54 pCP009044_00111 - 271 1.3e-07 30.9 0.1 1 1 1.7e-10 3e-07 29.8 0.1 4 51 45 93 42 96 0.93 Disulfide bond isomerase protein N-terminus Thioredoxin_4 PF13462.6 166 pCP009044_00111 - 271 1.3e-06 28.7 2.0 1 2 2.1e-06 0.0038 17.4 0.3 7 68 131 188 125 190 0.71 Thioredoxin Thioredoxin_4 PF13462.6 166 pCP009044_00111 - 271 1.3e-06 28.7 2.0 2 2 0.00047 0.85 9.8 0.1 93 149 180 241 175 258 0.64 Thioredoxin DSBA PF01323.20 193 pCP009044_00111 - 271 1.3e-06 28.3 0.3 1 2 5.7e-06 0.01 15.6 0.1 3 79 142 213 140 215 0.86 DSBA-like thioredoxin domain DSBA PF01323.20 193 pCP009044_00111 - 271 1.3e-06 28.3 0.3 2 2 4.4e-05 0.079 12.7 0.0 146 181 211 248 208 263 0.77 DSBA-like thioredoxin domain Glutaredoxin PF00462.24 60 pCP009044_00111 - 271 0.0039 17.4 0.3 1 2 2.1e-05 0.038 14.2 0.1 2 22 142 162 141 173 0.84 Glutaredoxin Glutaredoxin PF00462.24 60 pCP009044_00111 - 271 0.0039 17.4 0.3 2 2 0.41 7.4e+02 0.5 0.0 36 55 213 238 189 242 0.64 Glutaredoxin ATPgrasp_YheCD PF14398.6 256 pCP009044_00111 - 271 0.0088 15.3 0.1 1 1 7.5e-06 0.014 14.7 0.1 159 229 177 246 174 263 0.86 YheC/D like ATP-grasp TraF PF13728.6 224 pCP009044_00111 - 271 0.013 15.3 0.1 1 2 0.0035 6.2 6.6 0.0 128 150 136 158 120 165 0.87 F plasmid transfer operon protein TraF PF13728.6 224 pCP009044_00111 - 271 0.013 15.3 0.1 2 2 0.0041 7.4 6.3 0.0 185 211 225 251 206 254 0.80 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 76 pCP009044_00111 - 271 0.021 14.9 1.1 1 3 0.0066 12 6.0 0.0 5 22 143 161 139 166 0.80 Thioredoxin domain Thioredoxin_3 PF13192.6 76 pCP009044_00111 - 271 0.021 14.9 1.1 2 3 0.29 5.2e+02 0.8 0.0 33 53 192 214 177 227 0.69 Thioredoxin domain Thioredoxin_3 PF13192.6 76 pCP009044_00111 - 271 0.021 14.9 1.1 3 3 0.0055 9.8 6.3 0.4 17 72 196 256 190 260 0.68 Thioredoxin domain Thioredoxin_8 PF13905.6 95 pCP009044_00111 - 271 0.04 14.2 0.4 1 1 0.0001 0.18 12.1 0.4 2 94 138 244 137 246 0.68 Thioredoxin-like Thioredoxin_5 PF13743.6 186 pCP009044_00111 - 271 0.071 12.8 0.4 1 2 0.0038 6.9 6.3 0.4 2 24 143 165 142 201 0.80 Thioredoxin Thioredoxin_5 PF13743.6 186 pCP009044_00111 - 271 0.071 12.8 0.4 2 2 0.015 27 4.4 0.0 137 170 212 245 175 259 0.70 Thioredoxin TraV PF09676.10 132 pCP009044_00112 - 240 0.0043 18.0 5.3 1 1 2.7e-06 0.0097 16.9 5.2 1 51 27 76 27 182 0.79 Type IV conjugative transfer system lipoprotein (TraV) SH3_4 PF06347.13 56 pCP009044_00112 - 240 0.0063 16.3 0.0 1 1 3.9e-06 0.014 15.2 0.0 4 52 192 235 190 238 0.91 Bacterial SH3 domain SH3_3 PF08239.11 55 pCP009044_00112 - 240 0.013 15.7 0.1 1 1 9e-06 0.032 14.5 0.1 2 45 192 231 191 235 0.91 Bacterial SH3 domain Transketolase_N PF00456.21 334 pCP009044_00112 - 240 0.049 12.6 0.3 1 1 2.4e-05 0.085 11.8 0.3 213 292 91 170 65 213 0.80 Transketolase, thiamine diphosphate binding domain Herpes_glycop_D PF01537.17 124 pCP009044_00112 - 240 0.052 13.7 0.0 1 1 2.5e-05 0.089 13.0 0.0 35 77 6 48 1 61 0.87 Herpesvirus glycoprotein D/GG/GX domain SH3_3 PF08239.11 55 pCP009044_00113 - 191 5.6e-05 23.3 0.1 1 1 1.2e-07 0.00012 22.3 0.1 6 54 136 183 133 184 0.82 Bacterial SH3 domain ADIP PF11559.8 152 pCP009044_00113 - 191 0.0013 18.8 3.7 1 1 2.3e-06 0.0023 18.0 3.7 64 123 32 91 22 98 0.86 Afadin- and alpha -actinin-Binding Sec34 PF04136.15 149 pCP009044_00113 - 191 0.0038 17.1 1.5 1 1 5.4e-06 0.0054 16.6 1.5 4 64 36 96 33 126 0.89 Sec34-like family CLZ PF16526.5 71 pCP009044_00113 - 191 0.0068 16.7 4.4 1 2 0.0018 1.8 9.0 0.0 34 61 31 58 24 60 0.91 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CLZ PF16526.5 71 pCP009044_00113 - 191 0.0068 16.7 4.4 2 2 0.0048 4.8 7.6 2.2 30 57 62 89 59 92 0.75 C-terminal leucine zipper domain of cyclic nucleotide-gated channels SMC_ScpB PF04079.16 160 pCP009044_00113 - 191 0.0085 15.7 1.4 1 1 1.3e-05 0.013 15.2 1.4 23 93 33 103 7 115 0.86 Segregation and condensation complex subunit ScpB V_ATPase_I PF01496.19 813 pCP009044_00113 - 191 0.022 12.7 3.4 1 1 2.5e-05 0.025 12.5 3.4 44 147 31 137 20 180 0.53 V-type ATPase 116kDa subunit family HrpB7 PF09486.10 157 pCP009044_00113 - 191 0.03 14.7 0.6 1 1 4.5e-05 0.045 14.1 0.6 65 142 16 91 5 98 0.89 Bacterial type III secretion protein (HrpB7) Cob_adeno_trans PF01923.18 164 pCP009044_00113 - 191 0.041 14.0 1.6 1 1 6.8e-05 0.067 13.3 1.6 22 73 41 95 23 146 0.62 Cobalamin adenosyltransferase Spectrin PF00435.21 105 pCP009044_00113 - 191 0.046 14.2 2.7 1 1 0.00011 0.11 13.0 2.7 6 68 29 90 25 97 0.86 Spectrin repeat M PF02370.16 21 pCP009044_00113 - 191 0.072 13.7 6.6 1 1 0.00031 0.31 11.7 6.6 1 20 63 82 63 83 0.92 M protein repeat DUF1319 PF07028.11 109 pCP009044_00113 - 191 0.11 12.7 3.3 1 1 0.00023 0.23 11.7 3.3 36 96 55 114 18 123 0.73 Protein of unknown function (DUF1319) TolA_bind_tri PF16331.5 76 pCP009044_00113 - 191 0.16 12.0 2.2 1 2 0.00053 0.53 10.4 1.7 21 72 31 82 21 88 0.86 TolA binding protein trimerisation TolA_bind_tri PF16331.5 76 pCP009044_00113 - 191 0.16 12.0 2.2 2 2 0.14 1.3e+02 2.7 0.4 21 38 73 90 65 97 0.64 TolA binding protein trimerisation DUF272 PF03312.15 124 pCP009044_00113 - 191 0.2 11.9 3.6 1 2 0.0016 1.6 9.0 0.6 49 98 62 111 9 125 0.77 Protein of unknown function (DUF272) DUF272 PF03312.15 124 pCP009044_00113 - 191 0.2 11.9 3.6 2 2 0.063 62 3.8 0.1 71 101 131 166 123 187 0.65 Protein of unknown function (DUF272) FlaC_arch PF05377.11 55 pCP009044_00113 - 191 0.24 11.8 4.0 1 2 0.11 1.1e+02 3.3 0.1 24 45 31 52 21 63 0.84 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pCP009044_00113 - 191 0.24 11.8 4.0 2 2 0.002 2 8.9 1.0 3 28 66 91 64 98 0.89 Flagella accessory protein C (FlaC) NPV_P10 PF05531.12 75 pCP009044_00113 - 191 0.27 11.7 2.6 1 1 0.00055 0.55 10.7 1.7 12 50 57 95 53 101 0.74 Nucleopolyhedrovirus P10 protein GIT_CC PF16559.5 66 pCP009044_00113 - 191 0.67 9.9 6.4 1 2 0.46 4.6e+02 0.8 0.1 42 56 33 47 21 58 0.84 GIT coiled-coil Rho guanine nucleotide exchange factor GIT_CC PF16559.5 66 pCP009044_00113 - 191 0.67 9.9 6.4 2 2 0.00083 0.83 9.6 3.3 34 65 60 91 53 92 0.88 GIT coiled-coil Rho guanine nucleotide exchange factor YabA PF06156.13 102 pCP009044_00113 - 191 1.6 9.4 7.4 1 1 0.0027 2.7 8.7 7.4 5 65 32 91 29 153 0.85 Initiation control protein YabA Swi5 PF07061.11 80 pCP009044_00113 - 191 5.2 7.2 8.9 1 3 0.24 2.4e+02 1.9 0.1 8 38 33 63 30 64 0.84 Swi5 Swi5 PF07061.11 80 pCP009044_00113 - 191 5.2 7.2 8.9 2 3 0.0013 1.3 9.1 3.1 2 37 62 97 61 98 0.90 Swi5 Swi5 PF07061.11 80 pCP009044_00113 - 191 5.2 7.2 8.9 3 3 4.4 4.4e+03 -2.2 0.0 29 41 136 147 112 157 0.53 Swi5 Peptidase_C39 PF03412.15 133 pCP010073_00002 - 197 9e-18 64.4 0.0 1 1 1.9e-21 1.2e-17 64.0 0.0 2 124 33 162 32 176 0.81 Peptidase C39 family Peptidase_C70 PF12385.8 145 pCP010073_00002 - 197 0.00011 22.2 0.0 1 1 2.6e-08 0.00016 21.7 0.0 11 131 37 147 20 158 0.78 Papain-like cysteine protease AvrRpt2 Peptidase_C39_2 PF13529.6 144 pCP010073_00002 - 197 0.085 13.4 0.0 1 1 2.9e-05 0.18 12.4 0.0 6 143 36 143 31 144 0.67 Peptidase_C39 like family Relaxase PF03432.14 242 pCP010073_00004 - 462 1.6e-09 37.8 6.2 1 2 8.9e-14 1.6e-09 37.8 6.2 48 229 119 297 70 310 0.70 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP010073_00004 - 462 1.6e-09 37.8 6.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pCP010073_00005 - 183 0.00011 22.1 5.7 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP010073_00005 - 183 0.00011 22.1 5.7 2 3 0.49 1.8e+03 -0.9 0.0 21 36 77 92 71 97 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP010073_00005 - 183 0.00011 22.1 5.7 3 3 1.9e-05 0.067 13.2 0.7 15 62 107 156 95 161 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP010073_00005 - 183 0.049 13.8 1.8 1 1 1.9e-05 0.069 13.3 1.4 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP010073_00005 - 183 0.28 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP010073_00005 - 183 0.28 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP010073_00005 - 183 0.28 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pCP010073_00005 - 183 0.3 11.4 5.9 1 2 0.0004 1.4 9.2 2.0 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP010073_00005 - 183 0.3 11.4 5.9 2 2 0.015 55 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pCP010073_00005 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP010073_00005 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 pCP010073_00006 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP010073_00006 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 pCP010073_00006 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 pCP010073_00006 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP010073_00006 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 pCP010073_00008 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pCP010073_00008 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pCP010073_00009 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pCP010073_00009 - 408 0.087 12.8 0.3 1 1 8.5e-05 0.38 10.7 0.3 52 81 138 167 114 170 0.79 PAZ domain Toprim_4 PF13662.6 89 pCP010073_00009 - 408 0.11 13.0 0.1 1 1 5.4e-05 0.24 11.9 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pCP010073_00009 - 408 0.2 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP010073_00009 - 408 0.2 12.3 4.2 2 2 0.00032 1.4 9.5 0.2 15 80 321 382 320 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pCP010073_00010 - 92 0.0074 16.2 0.0 1 1 3e-06 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) CCDC50_N PF15295.6 126 pCP010073_00010 - 92 0.011 15.9 2.0 1 1 2.9e-06 0.013 15.6 2.0 57 116 26 91 23 92 0.88 Coiled-coil domain-containing protein 50 N-terminus BAR_3 PF16746.5 238 pCP010073_00010 - 92 0.021 14.6 1.6 1 1 5.1e-06 0.023 14.4 1.6 22 78 35 91 26 92 0.93 BAR domain of APPL family Uteroglobin PF01099.17 90 pCP010073_00010 - 92 2.4 8.6 5.7 1 2 0.0027 12 6.3 0.7 44 68 26 50 5 63 0.83 Uteroglobin family Uteroglobin PF01099.17 90 pCP010073_00010 - 92 2.4 8.6 5.7 2 2 0.006 27 5.2 0.6 38 64 64 91 55 92 0.79 Uteroglobin family Sdh_cyt PF01127.22 121 pCP010073_00011 - 98 0.00091 19.3 0.8 1 1 2.4e-07 0.0011 19.0 0.8 34 88 27 83 25 95 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pCP010073_00011 - 98 0.13 12.6 3.1 1 1 3.7e-05 0.17 12.2 3.1 6 55 19 81 16 97 0.63 2TM domain DUF2207 PF09972.9 492 pCP010073_00011 - 98 0.58 8.9 2.2 1 1 0.00013 0.6 8.8 2.2 384 439 30 87 6 95 0.60 Predicted membrane protein (DUF2207) DUF2633 PF11119.8 57 pCP010073_00011 - 98 0.58 10.1 3.8 1 2 1.1 5.1e+03 -2.5 0.0 8 14 7 13 5 17 0.78 Protein of unknown function (DUF2633) DUF2633 PF11119.8 57 pCP010073_00011 - 98 0.58 10.1 3.8 2 2 0.00051 2.3 8.2 4.2 11 33 34 57 27 60 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pCP010073_00013 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pCP010073_00014 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pCP010073_00015 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP010073_00015 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP010073_00015 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP010073_00015 - 597 0.0022 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP010073_00015 - 597 0.0022 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pCP010073_00015 - 597 0.0088 15.4 0.0 1 2 2.3e-05 0.058 12.7 0.0 16 70 30 83 23 120 0.90 KaiC ATPase PF06745.13 231 pCP010073_00015 - 597 0.0088 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pCP010073_00015 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP010073_00015 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pCP010073_00015 - 597 0.21 11.6 2.3 1 1 0.00045 1.2 9.3 2.3 1 29 35 63 35 536 0.89 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pCP010073_00015 - 597 0.37 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP010073_00015 - 597 0.37 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP010073_00015 - 597 0.37 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 pCP010073_00016 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP010073_00016 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP010073_00016 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP010073_00016 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP010073_00016 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP010073_00016 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP010073_00016 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain CRISPR_Cas2 PF09827.9 76 pCP010073_00017 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP010073_00017 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 TrbC PF04956.13 99 pCP010073_00019 - 87 1.5e-14 54.0 8.5 1 1 1.7e-18 1.6e-14 53.9 8.5 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP010073_00019 - 87 0.056 13.3 4.3 1 1 8.2e-06 0.073 12.9 4.2 76 135 35 87 12 87 0.71 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pCP010073_00020 - 922 3.6e-49 167.7 0.3 1 1 2e-52 9e-49 166.4 0.3 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP010073_00020 - 922 7e-21 74.3 1.2 1 1 2.8e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 pCP010073_00020 - 922 3.8e-07 29.4 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 pCP010073_00020 - 922 0.024 14.7 4.5 1 5 0.52 2.3e+03 -1.6 0.1 117 202 161 253 129 284 0.48 Helicase HerA, central domain DUF87 PF01935.17 227 pCP010073_00020 - 922 0.024 14.7 4.5 2 5 0.89 4e+03 -2.3 0.0 87 124 263 298 243 301 0.77 Helicase HerA, central domain DUF87 PF01935.17 227 pCP010073_00020 - 922 0.024 14.7 4.5 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 pCP010073_00020 - 922 0.024 14.7 4.5 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 pCP010073_00020 - 922 0.024 14.7 4.5 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain Phage_pRha PF09669.10 88 pCP010073_00021 - 185 6.9e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCP010073_00021 - 185 0.0016 18.5 0.0 1 1 9.1e-07 0.0033 17.5 0.0 23 90 27 94 23 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pCP010073_00021 - 185 0.031 13.9 0.1 1 2 0.063 2.3e+02 1.3 0.0 80 118 33 71 5 80 0.78 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pCP010073_00021 - 185 0.031 13.9 0.1 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pCP010073_00021 - 185 0.09 12.8 0.0 1 1 5.5e-05 0.2 11.7 0.0 77 131 80 130 62 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pCP010073_00021 - 185 0.56 10.3 5.4 1 3 0.048 1.7e+02 2.3 0.0 42 53 14 25 3 28 0.78 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP010073_00021 - 185 0.56 10.3 5.4 2 3 0.0021 7.7 6.6 0.8 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP010073_00021 - 185 0.56 10.3 5.4 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 Phage_pRha PF09669.10 88 pCP010073_00022 - 183 4.3e-24 84.9 0.3 1 1 3.8e-28 6.9e-24 84.2 0.3 2 88 24 117 23 117 0.78 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 pCP010073_00023 - 221 0.075 12.7 0.1 1 1 5.2e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pCP010073_00023 - 221 0.15 10.6 14.4 1 2 2.5e-06 0.009 14.7 7.8 332 412 3 86 1 147 0.85 Flagellar Assembly Protein A FapA PF03961.13 454 pCP010073_00023 - 221 0.15 10.6 14.4 2 2 0.09 3.2e+02 -0.3 1.2 298 360 145 212 127 221 0.43 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pCP010073_00023 - 221 0.95 9.6 11.6 1 3 1.7e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP010073_00023 - 221 0.95 9.6 11.6 2 3 0.31 1.1e+03 -0.3 0.0 110 126 136 152 113 165 0.63 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP010073_00023 - 221 0.95 9.6 11.6 3 3 0.33 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pCP010073_00023 - 221 1.7 8.6 14.4 1 3 1.4e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP010073_00023 - 221 1.7 8.6 14.4 2 3 0.23 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP010073_00023 - 221 1.7 8.6 14.4 3 3 0.073 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF465 PF04325.13 47 pCP010073_00023 - 221 4.6 7.4 9.4 1 3 0.0035 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP010073_00023 - 221 4.6 7.4 9.4 2 3 0.82 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP010073_00023 - 221 4.6 7.4 9.4 3 3 0.0077 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pCP010073_00024 - 141 1.7e-25 89.0 0.1 1 1 1.2e-29 2.2e-25 88.7 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pCP010073_00025 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP010073_00025 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP010073_00025 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP010073_00025 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP010073_00025 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP010073_00025 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP010073_00025 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pCP010073_00026 - 328 5.7e-28 98.7 13.6 1 1 2.6e-31 7.8e-28 98.2 13.6 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP010073_00026 - 328 0.0056 16.8 1.3 1 3 0.88 2.6e+03 -1.4 0.0 30 53 134 157 122 164 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP010073_00026 - 328 0.0056 16.8 1.3 2 3 8e-06 0.024 14.8 0.1 18 82 195 259 188 263 0.92 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP010073_00026 - 328 0.0056 16.8 1.3 3 3 1.2 3.7e+03 -1.9 0.0 62 79 302 319 292 327 0.75 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP010073_00026 - 328 0.0092 16.7 6.0 1 3 0.066 2e+02 2.6 0.4 93 135 105 145 41 146 0.60 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP010073_00026 - 328 0.0092 16.7 6.0 2 3 0.069 2.1e+02 2.6 0.4 52 135 111 145 79 186 0.62 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP010073_00026 - 328 0.0092 16.7 6.0 3 3 3.1e-06 0.0092 16.7 6.0 49 125 225 315 205 322 0.78 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 pCP010073_00026 - 328 0.1 13.3 3.5 1 2 1.7 5.1e+03 -1.9 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP010073_00026 - 328 0.1 13.3 3.5 2 2 2.6e-05 0.077 13.7 1.0 32 84 209 270 203 295 0.83 von Willebrand factor type A domain Phage_holin_6_1 PF09682.10 101 pCP010073_00026 - 328 0.13 12.7 8.7 1 2 9.1e-05 0.27 11.7 0.3 4 62 77 136 75 154 0.81 Bacteriophage holin of superfamily 6 (Holin_LLH) Phage_holin_6_1 PF09682.10 101 pCP010073_00026 - 328 0.13 12.7 8.7 2 2 0.017 51 4.4 2.4 36 90 268 323 251 327 0.83 Bacteriophage holin of superfamily 6 (Holin_LLH) DUF3752 PF12572.8 152 pCP010073_00026 - 328 3.1 8.3 8.6 1 2 0.0033 9.9 6.7 0.4 21 49 106 136 98 153 0.70 Protein of unknown function (DUF3752) DUF3752 PF12572.8 152 pCP010073_00026 - 328 3.1 8.3 8.6 2 2 0.01 31 5.1 2.6 33 106 233 320 218 328 0.76 Protein of unknown function (DUF3752) TrbL PF04610.14 215 pCP010073_00027 - 330 2.3e-30 106.0 31.8 1 2 3.8e-34 2.3e-30 106.0 31.8 1 214 38 250 38 251 0.92 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP010073_00027 - 330 2.3e-30 106.0 31.8 2 2 0.16 9.3e+02 -0.6 0.1 55 91 281 327 255 330 0.61 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP010073_00027 - 330 0.17 11.7 1.7 1 2 0.16 9.4e+02 -0.3 0.1 35 66 65 102 58 115 0.54 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP010073_00027 - 330 0.17 11.7 1.7 2 2 9.1e-05 0.55 10.1 0.1 29 81 232 286 201 298 0.75 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP010073_00027 - 330 1.7 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 297 327 290 329 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pCP010073_00028 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP010073_00028 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pCP010073_00029 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP010073_00029 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pCP010073_00030 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP010073_00030 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP010073_00030 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pCP010073_00031 - 390 3.1e-48 164.1 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 193 374 193 374 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP010073_00031 - 390 0.028 13.5 0.1 1 1 4.8e-06 0.043 12.9 0.1 31 81 321 371 304 376 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pCP010073_00032 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP010073_00032 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP010073_00032 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP010073_00032 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP010073_00032 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP010073_00032 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP010073_00032 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP010073_00032 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP010073_00032 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP010073_00032 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP010073_00032 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP010073_00032 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP010073_00032 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP010073_00032 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP010073_00032 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP010073_00032 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP010073_00032 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP010073_00032 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP010073_00032 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP010073_00032 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP010073_00032 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP010073_00032 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP010073_00032 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP010073_00032 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP010073_00032 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP010073_00032 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP010073_00032 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP010073_00032 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP010073_00032 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP010073_00032 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP010073_00032 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP010073_00032 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pCP010073_00033 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP010073_00033 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP010073_00033 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP010073_00033 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP010073_00033 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pCP010073_00034 - 145 5.5e-17 62.1 0.4 1 1 1.2e-20 6.9e-17 61.8 0.4 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pCP010073_00034 - 145 0.068 13.0 0.2 1 1 3.3e-05 0.19 11.5 0.2 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP010073_00034 - 145 3.9 7.4 6.0 1 2 0.00075 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP010073_00034 - 145 3.9 7.4 6.0 2 2 0.16 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pCP010073_00035 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pCP010073_00036 - 265 0.038 13.8 0.4 1 2 0.9 5.4e+03 -2.9 0.1 129 153 22 46 15 49 0.68 PRELI-like family PRELI PF04707.14 157 pCP010073_00036 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP010073_00036 - 265 0.077 11.7 0.0 1 1 1.8e-05 0.1 11.2 0.0 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP010073_00036 - 265 0.74 9.8 5.2 1 3 0.4 2.4e+03 -1.6 0.1 113 134 21 42 5 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP010073_00036 - 265 0.74 9.8 5.2 2 3 7.4e-05 0.44 10.5 1.9 42 108 120 185 89 189 0.81 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP010073_00036 - 265 0.74 9.8 5.2 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pCP010073_00038 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP010073_00038 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pCP010073_00039 - 730 1.2e-96 324.2 8.2 1 1 1.5e-99 1.7e-96 323.8 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP010073_00039 - 730 1.8e-12 47.4 0.4 1 2 9.2e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP010073_00039 - 730 1.8e-12 47.4 0.4 2 2 3.9 4.4e+03 -2.0 0.0 38 56 537 556 489 567 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP010073_00039 - 730 1.7e-08 34.1 15.1 1 2 3.7e-09 4.1e-06 26.5 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP010073_00039 - 730 1.7e-08 34.1 15.1 2 2 8.7e-05 0.098 12.5 2.4 3 27 683 710 681 719 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP010073_00039 - 730 1e-05 25.7 2.3 1 3 8.3 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP010073_00039 - 730 1e-05 25.7 2.3 2 3 0.00037 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP010073_00039 - 730 1e-05 25.7 2.3 3 3 3.8e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP010073_00039 - 730 0.012 15.7 1.3 1 2 0.0077 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP010073_00039 - 730 0.012 15.7 1.3 2 2 0.0045 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP010073_00039 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP010073_00039 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 pCP010073_00039 - 730 0.056 14.3 2.8 1 2 0.007 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP010073_00039 - 730 0.056 14.3 2.8 2 2 0.021 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP010073_00039 - 730 0.087 12.3 2.7 1 2 0.003 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP010073_00039 - 730 0.087 12.3 2.7 2 2 0.02 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 pCP010073_00039 - 730 0.088 13.1 4.5 1 2 0.00079 0.88 9.9 3.7 5 64 627 689 623 696 0.71 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP010073_00039 - 730 0.088 13.1 4.5 2 2 0.0023 2.6 8.4 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain EF-hand_8 PF13833.6 55 pCP010073_00039 - 730 0.088 12.7 0.0 1 1 0.00027 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 pCP010073_00039 - 730 0.46 10.7 3.3 1 3 1.7 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP010073_00039 - 730 0.46 10.7 3.3 2 3 5 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP010073_00039 - 730 0.46 10.7 3.3 3 3 0.00076 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP010073_00039 - 730 0.55 9.9 3.0 1 2 0.03 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP010073_00039 - 730 0.55 9.9 3.0 2 2 0.011 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP010073_00039 - 730 0.64 10.0 3.8 1 2 0.0041 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP010073_00039 - 730 0.64 10.0 3.8 2 2 0.13 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP010073_00039 - 730 0.75 9.9 3.8 1 2 0.1 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP010073_00039 - 730 0.75 9.9 3.8 2 2 0.0039 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP010073_00039 - 730 6.9 6.5 8.0 1 2 0.046 51 3.7 2.5 15 31 629 645 627 660 0.79 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP010073_00039 - 730 6.9 6.5 8.0 2 2 0.016 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP010073_00039 - 730 8.4 6.4 6.5 1 2 0.01 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP010073_00039 - 730 8.4 6.4 6.5 2 2 0.088 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pCP010073_00040 - 351 2.7e-05 24.1 2.2 1 1 8.4e-09 7.5e-05 22.6 2.2 4 133 209 334 206 344 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP010073_00040 - 351 0.016 15.2 4.6 1 1 1.5e-05 0.14 12.1 4.6 37 125 189 322 89 330 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pCP010073_00042 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP010073_00042 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP010073_00042 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP010073_00042 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP010073_00042 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP010073_00042 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP010073_00042 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP010073_00042 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP010073_00042 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP010073_00042 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family AAA_18 PF13238.6 130 pCP010073_00043 - 152 1.5e-06 28.8 0.0 1 1 4.5e-10 2e-06 28.4 0.0 44 122 15 104 2 112 0.79 AAA domain CPT PF07931.12 174 pCP010073_00043 - 152 3.5e-06 27.0 0.0 1 1 9.4e-10 4.2e-06 26.7 0.0 59 172 26 143 5 145 0.80 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 pCP010073_00043 - 152 0.0018 18.5 0.0 1 1 5.7e-07 0.0026 17.9 0.0 55 135 35 114 4 117 0.78 AAA domain MKT1_N PF12247.8 90 pCP010073_00043 - 152 0.088 13.2 0.0 1 1 3.7e-05 0.17 12.3 0.0 14 51 10 45 7 135 0.89 Temperature dependent protein affecting M2 dsRNA replication APH PF01636.23 240 pCP010073_00044 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pCP010073_00044 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pCP010073_00044 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pCP010073_00044 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pCP010073_00044 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pCP010073_00044 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 pCP010073_00045 - 138 1.6e-24 87.2 0.0 1 1 1.2e-28 2.1e-24 86.8 0.0 1 74 1 73 1 81 0.97 Pyroglutamyl peptidase Lip_prot_lig_C PF10437.9 85 pCP010073_00046 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCP010073_00046 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pCP010073_00046 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP010073_00046 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pCP010073_00047 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCP010073_00047 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 pCP010073_00048 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP010073_00048 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP010073_00048 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pCP010073_00048 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pCP010073_00048 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pCP010073_00048 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP010073_00048 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP010073_00048 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP010073_00048 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 pCP010073_00049 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP010073_00049 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP010073_00049 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP010073_00049 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP010073_00049 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP010073_00049 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pCP010073_00050 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP010073_00050 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pCP010073_00051 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP010073_00051 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP010073_00051 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP010073_00051 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP010073_00051 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP010073_00051 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pCP010073_00052 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pCP010073_00053 - 1932 2e-16 59.6 0.8 1 3 1.7e-19 6e-16 58.1 0.1 57 245 1018 1273 936 1314 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP010073_00053 - 1932 2e-16 59.6 0.8 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP010073_00053 - 1932 2e-16 59.6 0.8 3 3 1.1 3.9e+03 -3.8 0.0 172 199 1879 1907 1860 1915 0.75 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP010073_00053 - 1932 5.5e-08 33.0 8.4 1 2 1.5e-11 5.5e-08 33.0 8.4 2 148 1000 1212 999 1243 0.71 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP010073_00053 - 1932 5.5e-08 33.0 8.4 2 2 0.38 1.4e+03 -0.8 5.3 36 121 1801 1904 1749 1929 0.62 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP010073_00053 - 1932 9.1e-07 29.2 0.2 1 2 0.16 5.7e+02 0.9 0.0 45 73 1077 1105 1029 1108 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP010073_00053 - 1932 9.1e-07 29.2 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP010073_00053 - 1932 1.1e-05 25.3 1.8 1 2 3.3e-07 0.0012 18.7 0.3 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP010073_00053 - 1932 1.1e-05 25.3 1.8 2 2 0.15 5.4e+02 0.2 0.1 120 143 1884 1909 1831 1929 0.67 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP010073_00053 - 1932 3.8e-05 24.1 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP010073_00053 - 1932 3.8e-05 24.1 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 664 701 655 716 0.65 Eco57I restriction-modification methylase HTH_3 PF01381.22 55 pCP010073_00054 - 314 4.7e-06 26.6 0.0 1 2 3.1e-07 0.00046 20.2 0.0 2 29 3 30 2 30 0.90 Helix-turn-helix HTH_3 PF01381.22 55 pCP010073_00054 - 314 4.7e-06 26.6 0.0 2 2 0.032 48 4.1 0.0 26 55 118 147 92 147 0.84 Helix-turn-helix HTH_19 PF12844.7 65 pCP010073_00054 - 314 1.1e-05 25.3 0.2 1 2 0.0044 6.6 6.8 0.0 11 32 9 30 1 46 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 pCP010073_00054 - 314 1.1e-05 25.3 0.2 2 2 7.6e-06 0.011 15.7 0.0 27 64 116 152 89 153 0.88 Helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP010073_00054 - 314 0.00047 20.2 0.0 1 2 5.4e-05 0.081 13.0 0.0 11 49 10 47 2 51 0.77 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP010073_00054 - 314 0.00047 20.2 0.0 2 2 0.025 37 4.5 0.0 41 64 131 154 124 155 0.83 Bacteriophage CI repressor helix-turn-helix domain HTH_23 PF13384.6 50 pCP010073_00054 - 314 0.0075 16.0 0.0 1 2 3e-05 0.045 13.6 0.0 16 37 7 30 1 36 0.86 Homeodomain-like domain HTH_23 PF13384.6 50 pCP010073_00054 - 314 0.0075 16.0 0.0 2 2 0.89 1.3e+03 -0.7 0.0 35 49 54 67 52 67 0.85 Homeodomain-like domain HTH_24 PF13412.6 48 pCP010073_00054 - 314 0.0076 15.8 0.0 1 2 7e-05 0.11 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP010073_00054 - 314 0.0076 15.8 0.0 2 2 0.25 3.7e+02 0.8 0.0 26 39 98 111 94 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 pCP010073_00054 - 314 0.012 15.7 0.0 1 2 2.4e-05 0.037 14.2 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain HTH_28 PF13518.6 52 pCP010073_00054 - 314 0.012 15.7 0.0 2 2 8.8 1.3e+04 -3.6 0.0 34 44 58 67 55 68 0.76 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 pCP010073_00054 - 314 0.022 14.6 0.1 1 2 4.1e-05 0.062 13.2 0.0 4 36 5 37 2 54 0.77 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 pCP010073_00054 - 314 0.022 14.6 0.1 2 2 4.2 6.2e+03 -2.8 0.1 38 47 290 299 289 300 0.85 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_26 PF13443.6 63 pCP010073_00054 - 314 0.045 14.2 0.0 1 2 0.00011 0.16 12.4 0.0 3 30 3 30 1 38 0.88 Cro/C1-type HTH DNA-binding domain HTH_26 PF13443.6 63 pCP010073_00054 - 314 0.045 14.2 0.0 2 2 4.9 7.2e+03 -2.5 0.0 25 52 116 142 111 148 0.76 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.7 51 pCP010073_00054 - 314 0.1 12.8 0.0 1 2 0.11 1.7e+02 2.5 0.0 5 16 3 14 2 16 0.90 Helix-turn-helix domain HTH_17 PF12728.7 51 pCP010073_00054 - 314 0.1 12.8 0.0 2 2 0.00093 1.4 9.2 0.0 5 27 14 36 11 42 0.83 Helix-turn-helix domain HTH_31 PF13560.6 64 pCP010073_00054 - 314 0.11 12.8 0.0 1 1 0.00013 0.2 12.0 0.0 12 33 8 29 2 40 0.88 Helix-turn-helix domain Phage_AlpA PF05930.12 51 pCP010073_00054 - 314 0.15 11.9 0.0 1 2 0.013 20 5.1 0.0 6 19 2 15 1 18 0.89 Prophage CP4-57 regulatory protein (AlpA) Phage_AlpA PF05930.12 51 pCP010073_00054 - 314 0.15 11.9 0.0 2 2 0.0027 4 7.3 0.0 5 23 12 30 11 35 0.88 Prophage CP4-57 regulatory protein (AlpA) Sigma70_r4_2 PF08281.12 54 pCP010073_00054 - 314 0.16 11.7 0.0 1 1 0.00023 0.35 10.6 0.0 25 46 9 30 5 30 0.93 Sigma-70, region 4 Peptidase_C39 PF03412.15 133 pCP010302_00002 - 197 9e-18 64.4 0.0 1 1 1.9e-21 1.2e-17 64.0 0.0 2 124 33 162 32 176 0.81 Peptidase C39 family Peptidase_C70 PF12385.8 145 pCP010302_00002 - 197 0.00011 22.2 0.0 1 1 2.6e-08 0.00016 21.7 0.0 11 131 37 147 20 158 0.78 Papain-like cysteine protease AvrRpt2 Peptidase_C39_2 PF13529.6 144 pCP010302_00002 - 197 0.085 13.4 0.0 1 1 2.9e-05 0.18 12.4 0.0 6 143 36 143 31 144 0.67 Peptidase_C39 like family Relaxase PF03432.14 242 pCP010302_00004 - 462 1.6e-09 37.8 6.2 1 2 8.9e-14 1.6e-09 37.8 6.2 48 229 119 297 70 310 0.70 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP010302_00004 - 462 1.6e-09 37.8 6.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pCP010302_00005 - 183 0.00011 22.1 5.7 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP010302_00005 - 183 0.00011 22.1 5.7 2 3 0.49 1.8e+03 -0.9 0.0 21 36 77 92 71 97 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP010302_00005 - 183 0.00011 22.1 5.7 3 3 1.9e-05 0.067 13.2 0.7 15 62 107 156 95 161 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP010302_00005 - 183 0.049 13.8 1.8 1 1 1.9e-05 0.069 13.3 1.4 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP010302_00005 - 183 0.28 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP010302_00005 - 183 0.28 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP010302_00005 - 183 0.28 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pCP010302_00005 - 183 0.3 11.4 5.9 1 2 0.0004 1.4 9.2 2.0 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP010302_00005 - 183 0.3 11.4 5.9 2 2 0.015 55 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pCP010302_00005 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP010302_00005 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 pCP010302_00006 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP010302_00006 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 pCP010302_00006 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 pCP010302_00006 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP010302_00006 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 pCP010302_00008 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pCP010302_00008 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pCP010302_00009 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pCP010302_00009 - 408 0.087 12.8 0.3 1 1 8.5e-05 0.38 10.7 0.3 52 81 138 167 114 170 0.79 PAZ domain Toprim_4 PF13662.6 89 pCP010302_00009 - 408 0.11 13.0 0.1 1 1 5.4e-05 0.24 11.9 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pCP010302_00009 - 408 0.2 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP010302_00009 - 408 0.2 12.3 4.2 2 2 0.00032 1.4 9.5 0.2 15 80 321 382 320 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pCP010302_00010 - 92 0.0074 16.2 0.0 1 1 3e-06 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) CCDC50_N PF15295.6 126 pCP010302_00010 - 92 0.011 15.9 2.0 1 1 2.9e-06 0.013 15.6 2.0 57 116 26 91 23 92 0.88 Coiled-coil domain-containing protein 50 N-terminus BAR_3 PF16746.5 238 pCP010302_00010 - 92 0.021 14.6 1.6 1 1 5.1e-06 0.023 14.4 1.6 22 78 35 91 26 92 0.93 BAR domain of APPL family Uteroglobin PF01099.17 90 pCP010302_00010 - 92 2.4 8.6 5.7 1 2 0.0027 12 6.3 0.7 44 68 26 50 5 63 0.83 Uteroglobin family Uteroglobin PF01099.17 90 pCP010302_00010 - 92 2.4 8.6 5.7 2 2 0.006 27 5.2 0.6 38 64 64 91 55 92 0.79 Uteroglobin family Sdh_cyt PF01127.22 121 pCP010302_00011 - 98 0.00091 19.3 0.8 1 1 2.4e-07 0.0011 19.0 0.8 34 88 27 83 25 95 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pCP010302_00011 - 98 0.13 12.6 3.1 1 1 3.7e-05 0.17 12.2 3.1 6 55 19 81 16 97 0.63 2TM domain DUF2207 PF09972.9 492 pCP010302_00011 - 98 0.58 8.9 2.2 1 1 0.00013 0.6 8.8 2.2 384 439 30 87 6 95 0.60 Predicted membrane protein (DUF2207) DUF2633 PF11119.8 57 pCP010302_00011 - 98 0.58 10.1 3.8 1 2 1.1 5.1e+03 -2.5 0.0 8 14 7 13 5 17 0.78 Protein of unknown function (DUF2633) DUF2633 PF11119.8 57 pCP010302_00011 - 98 0.58 10.1 3.8 2 2 0.00051 2.3 8.2 4.2 11 33 34 57 27 60 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pCP010302_00013 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pCP010302_00014 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pCP010302_00015 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP010302_00015 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP010302_00015 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP010302_00015 - 597 0.0022 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP010302_00015 - 597 0.0022 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pCP010302_00015 - 597 0.0088 15.4 0.0 1 2 2.3e-05 0.058 12.7 0.0 16 70 30 83 23 120 0.90 KaiC ATPase PF06745.13 231 pCP010302_00015 - 597 0.0088 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pCP010302_00015 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP010302_00015 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pCP010302_00015 - 597 0.21 11.6 2.3 1 1 0.00045 1.2 9.3 2.3 1 29 35 63 35 536 0.89 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pCP010302_00015 - 597 0.37 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP010302_00015 - 597 0.37 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP010302_00015 - 597 0.37 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 pCP010302_00016 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP010302_00016 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP010302_00016 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP010302_00016 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP010302_00016 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP010302_00016 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP010302_00016 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain CRISPR_Cas2 PF09827.9 76 pCP010302_00017 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP010302_00017 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 TrbC PF04956.13 99 pCP010302_00019 - 87 1.5e-14 54.0 8.5 1 1 1.7e-18 1.6e-14 53.9 8.5 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP010302_00019 - 87 0.056 13.3 4.3 1 1 8.2e-06 0.073 12.9 4.2 76 135 35 87 12 87 0.71 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pCP010302_00020 - 922 3.6e-49 167.7 0.3 1 1 2e-52 9e-49 166.4 0.3 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP010302_00020 - 922 7e-21 74.3 1.2 1 1 2.8e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 pCP010302_00020 - 922 3.8e-07 29.4 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 pCP010302_00020 - 922 0.024 14.7 4.5 1 5 0.52 2.3e+03 -1.6 0.1 117 202 161 253 129 284 0.48 Helicase HerA, central domain DUF87 PF01935.17 227 pCP010302_00020 - 922 0.024 14.7 4.5 2 5 0.89 4e+03 -2.3 0.0 87 124 263 298 243 301 0.77 Helicase HerA, central domain DUF87 PF01935.17 227 pCP010302_00020 - 922 0.024 14.7 4.5 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 pCP010302_00020 - 922 0.024 14.7 4.5 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 pCP010302_00020 - 922 0.024 14.7 4.5 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain Phage_pRha PF09669.10 88 pCP010302_00021 - 185 6.9e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCP010302_00021 - 185 0.0016 18.5 0.0 1 1 9.1e-07 0.0033 17.5 0.0 23 90 27 94 23 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pCP010302_00021 - 185 0.031 13.9 0.1 1 2 0.063 2.3e+02 1.3 0.0 80 118 33 71 5 80 0.78 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pCP010302_00021 - 185 0.031 13.9 0.1 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pCP010302_00021 - 185 0.09 12.8 0.0 1 1 5.5e-05 0.2 11.7 0.0 77 131 80 130 62 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pCP010302_00021 - 185 0.56 10.3 5.4 1 3 0.048 1.7e+02 2.3 0.0 42 53 14 25 3 28 0.78 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP010302_00021 - 185 0.56 10.3 5.4 2 3 0.0021 7.7 6.6 0.8 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP010302_00021 - 185 0.56 10.3 5.4 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 Phage_pRha PF09669.10 88 pCP010302_00022 - 183 4.3e-24 84.9 0.3 1 1 3.8e-28 6.9e-24 84.2 0.3 2 88 24 117 23 117 0.78 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 pCP010302_00023 - 221 0.075 12.7 0.1 1 1 5.2e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pCP010302_00023 - 221 0.15 10.6 14.4 1 2 2.5e-06 0.009 14.7 7.8 332 412 3 86 1 147 0.85 Flagellar Assembly Protein A FapA PF03961.13 454 pCP010302_00023 - 221 0.15 10.6 14.4 2 2 0.09 3.2e+02 -0.3 1.2 298 360 145 212 127 221 0.43 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pCP010302_00023 - 221 0.95 9.6 11.6 1 3 1.7e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP010302_00023 - 221 0.95 9.6 11.6 2 3 0.31 1.1e+03 -0.3 0.0 110 126 136 152 113 165 0.63 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP010302_00023 - 221 0.95 9.6 11.6 3 3 0.33 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pCP010302_00023 - 221 1.7 8.6 14.4 1 3 1.4e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP010302_00023 - 221 1.7 8.6 14.4 2 3 0.23 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP010302_00023 - 221 1.7 8.6 14.4 3 3 0.073 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF465 PF04325.13 47 pCP010302_00023 - 221 4.6 7.4 9.4 1 3 0.0035 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP010302_00023 - 221 4.6 7.4 9.4 2 3 0.82 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP010302_00023 - 221 4.6 7.4 9.4 3 3 0.0077 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pCP010302_00024 - 141 1.7e-25 89.0 0.1 1 1 1.2e-29 2.2e-25 88.7 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pCP010302_00025 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP010302_00025 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP010302_00025 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP010302_00025 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP010302_00025 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP010302_00025 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP010302_00025 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pCP010302_00026 - 328 5.7e-28 98.7 13.6 1 1 2.6e-31 7.8e-28 98.2 13.6 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP010302_00026 - 328 0.0056 16.8 1.3 1 3 0.88 2.6e+03 -1.4 0.0 30 53 134 157 122 164 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP010302_00026 - 328 0.0056 16.8 1.3 2 3 8e-06 0.024 14.8 0.1 18 82 195 259 188 263 0.92 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP010302_00026 - 328 0.0056 16.8 1.3 3 3 1.2 3.7e+03 -1.9 0.0 62 79 302 319 292 327 0.75 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP010302_00026 - 328 0.0092 16.7 6.0 1 3 0.066 2e+02 2.6 0.4 93 135 105 145 41 146 0.60 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP010302_00026 - 328 0.0092 16.7 6.0 2 3 0.069 2.1e+02 2.6 0.4 52 135 111 145 79 186 0.62 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP010302_00026 - 328 0.0092 16.7 6.0 3 3 3.1e-06 0.0092 16.7 6.0 49 125 225 315 205 322 0.78 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 pCP010302_00026 - 328 0.1 13.3 3.5 1 2 1.7 5.1e+03 -1.9 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP010302_00026 - 328 0.1 13.3 3.5 2 2 2.6e-05 0.077 13.7 1.0 32 84 209 270 203 295 0.83 von Willebrand factor type A domain Phage_holin_6_1 PF09682.10 101 pCP010302_00026 - 328 0.13 12.7 8.7 1 2 9.1e-05 0.27 11.7 0.3 4 62 77 136 75 154 0.81 Bacteriophage holin of superfamily 6 (Holin_LLH) Phage_holin_6_1 PF09682.10 101 pCP010302_00026 - 328 0.13 12.7 8.7 2 2 0.017 51 4.4 2.4 36 90 268 323 251 327 0.83 Bacteriophage holin of superfamily 6 (Holin_LLH) DUF3752 PF12572.8 152 pCP010302_00026 - 328 3.1 8.3 8.6 1 2 0.0033 9.9 6.7 0.4 21 49 106 136 98 153 0.70 Protein of unknown function (DUF3752) DUF3752 PF12572.8 152 pCP010302_00026 - 328 3.1 8.3 8.6 2 2 0.01 31 5.1 2.6 33 106 233 320 218 328 0.76 Protein of unknown function (DUF3752) TrbL PF04610.14 215 pCP010302_00027 - 330 2.3e-30 106.0 31.8 1 2 3.8e-34 2.3e-30 106.0 31.8 1 214 38 250 38 251 0.92 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP010302_00027 - 330 2.3e-30 106.0 31.8 2 2 0.16 9.3e+02 -0.6 0.1 55 91 281 327 255 330 0.61 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP010302_00027 - 330 0.17 11.7 1.7 1 2 0.16 9.4e+02 -0.3 0.1 35 66 65 102 58 115 0.54 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP010302_00027 - 330 0.17 11.7 1.7 2 2 9.1e-05 0.55 10.1 0.1 29 81 232 286 201 298 0.75 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP010302_00027 - 330 1.7 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 297 327 290 329 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pCP010302_00028 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP010302_00028 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pCP010302_00029 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP010302_00029 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pCP010302_00030 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP010302_00030 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP010302_00030 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pCP010302_00031 - 390 3.1e-48 164.1 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 193 374 193 374 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP010302_00031 - 390 0.028 13.5 0.1 1 1 4.8e-06 0.043 12.9 0.1 31 81 321 371 304 376 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pCP010302_00032 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP010302_00032 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP010302_00032 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP010302_00032 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP010302_00032 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP010302_00032 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP010302_00032 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP010302_00032 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP010302_00032 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP010302_00032 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP010302_00032 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP010302_00032 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP010302_00032 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP010302_00032 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP010302_00032 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP010302_00032 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP010302_00032 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP010302_00032 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP010302_00032 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP010302_00032 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP010302_00032 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP010302_00032 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP010302_00032 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP010302_00032 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP010302_00032 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP010302_00032 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP010302_00032 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP010302_00032 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP010302_00032 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP010302_00032 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP010302_00032 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP010302_00032 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pCP010302_00033 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP010302_00033 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP010302_00033 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP010302_00033 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP010302_00033 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pCP010302_00034 - 145 5.5e-17 62.1 0.4 1 1 1.2e-20 6.9e-17 61.8 0.4 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pCP010302_00034 - 145 0.068 13.0 0.2 1 1 3.3e-05 0.19 11.5 0.2 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP010302_00034 - 145 3.9 7.4 6.0 1 2 0.00075 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP010302_00034 - 145 3.9 7.4 6.0 2 2 0.16 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pCP010302_00035 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pCP010302_00036 - 265 0.038 13.8 0.4 1 2 0.9 5.4e+03 -2.9 0.1 129 153 22 46 15 49 0.68 PRELI-like family PRELI PF04707.14 157 pCP010302_00036 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP010302_00036 - 265 0.077 11.7 0.0 1 1 1.8e-05 0.1 11.2 0.0 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP010302_00036 - 265 0.74 9.8 5.2 1 3 0.4 2.4e+03 -1.6 0.1 113 134 21 42 5 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP010302_00036 - 265 0.74 9.8 5.2 2 3 7.4e-05 0.44 10.5 1.9 42 108 120 185 89 189 0.81 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP010302_00036 - 265 0.74 9.8 5.2 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pCP010302_00038 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP010302_00038 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pCP010302_00039 - 730 1.2e-96 324.2 8.2 1 1 1.5e-99 1.7e-96 323.8 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP010302_00039 - 730 1.8e-12 47.4 0.4 1 2 9.2e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP010302_00039 - 730 1.8e-12 47.4 0.4 2 2 3.9 4.4e+03 -2.0 0.0 38 56 537 556 489 567 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP010302_00039 - 730 1.7e-08 34.1 15.1 1 2 3.7e-09 4.1e-06 26.5 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP010302_00039 - 730 1.7e-08 34.1 15.1 2 2 8.7e-05 0.098 12.5 2.4 3 27 683 710 681 719 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP010302_00039 - 730 1e-05 25.7 2.3 1 3 8.3 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP010302_00039 - 730 1e-05 25.7 2.3 2 3 0.00037 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP010302_00039 - 730 1e-05 25.7 2.3 3 3 3.8e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP010302_00039 - 730 0.012 15.7 1.3 1 2 0.0077 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP010302_00039 - 730 0.012 15.7 1.3 2 2 0.0045 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP010302_00039 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP010302_00039 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 pCP010302_00039 - 730 0.056 14.3 2.8 1 2 0.007 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP010302_00039 - 730 0.056 14.3 2.8 2 2 0.021 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP010302_00039 - 730 0.087 12.3 2.7 1 2 0.003 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP010302_00039 - 730 0.087 12.3 2.7 2 2 0.02 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 pCP010302_00039 - 730 0.088 13.1 4.5 1 2 0.00079 0.88 9.9 3.7 5 64 627 689 623 696 0.71 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP010302_00039 - 730 0.088 13.1 4.5 2 2 0.0023 2.6 8.4 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain EF-hand_8 PF13833.6 55 pCP010302_00039 - 730 0.088 12.7 0.0 1 1 0.00027 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 pCP010302_00039 - 730 0.46 10.7 3.3 1 3 1.7 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP010302_00039 - 730 0.46 10.7 3.3 2 3 5 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP010302_00039 - 730 0.46 10.7 3.3 3 3 0.00076 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP010302_00039 - 730 0.55 9.9 3.0 1 2 0.03 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP010302_00039 - 730 0.55 9.9 3.0 2 2 0.011 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP010302_00039 - 730 0.64 10.0 3.8 1 2 0.0041 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP010302_00039 - 730 0.64 10.0 3.8 2 2 0.13 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP010302_00039 - 730 0.75 9.9 3.8 1 2 0.1 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP010302_00039 - 730 0.75 9.9 3.8 2 2 0.0039 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP010302_00039 - 730 6.9 6.5 8.0 1 2 0.046 51 3.7 2.5 15 31 629 645 627 660 0.79 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP010302_00039 - 730 6.9 6.5 8.0 2 2 0.016 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP010302_00039 - 730 8.4 6.4 6.5 1 2 0.01 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP010302_00039 - 730 8.4 6.4 6.5 2 2 0.088 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pCP010302_00040 - 351 2.7e-05 24.1 2.2 1 1 8.4e-09 7.5e-05 22.6 2.2 4 133 209 334 206 344 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP010302_00040 - 351 0.016 15.2 4.6 1 1 1.5e-05 0.14 12.1 4.6 37 125 189 322 89 330 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pCP010302_00042 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP010302_00042 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP010302_00042 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP010302_00042 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP010302_00042 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP010302_00042 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP010302_00042 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP010302_00042 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP010302_00042 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP010302_00042 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family AAA_18 PF13238.6 130 pCP010302_00043 - 152 1.5e-06 28.8 0.0 1 1 4.5e-10 2e-06 28.4 0.0 44 122 15 104 2 112 0.79 AAA domain CPT PF07931.12 174 pCP010302_00043 - 152 3.5e-06 27.0 0.0 1 1 9.4e-10 4.2e-06 26.7 0.0 59 172 26 143 5 145 0.80 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 pCP010302_00043 - 152 0.0018 18.5 0.0 1 1 5.7e-07 0.0026 17.9 0.0 55 135 35 114 4 117 0.78 AAA domain MKT1_N PF12247.8 90 pCP010302_00043 - 152 0.088 13.2 0.0 1 1 3.7e-05 0.17 12.3 0.0 14 51 10 45 7 135 0.89 Temperature dependent protein affecting M2 dsRNA replication APH PF01636.23 240 pCP010302_00044 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pCP010302_00044 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pCP010302_00044 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pCP010302_00044 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pCP010302_00044 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pCP010302_00044 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 pCP010302_00045 - 138 1.6e-24 87.2 0.0 1 1 1.2e-28 2.1e-24 86.8 0.0 1 74 1 73 1 81 0.97 Pyroglutamyl peptidase Lip_prot_lig_C PF10437.9 85 pCP010302_00046 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCP010302_00046 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pCP010302_00046 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP010302_00046 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pCP010302_00047 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCP010302_00047 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 pCP010302_00048 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP010302_00048 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP010302_00048 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pCP010302_00048 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pCP010302_00048 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pCP010302_00048 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP010302_00048 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP010302_00048 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP010302_00048 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 pCP010302_00049 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP010302_00049 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP010302_00049 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP010302_00049 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP010302_00049 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP010302_00049 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pCP010302_00050 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP010302_00050 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pCP010302_00051 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP010302_00051 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP010302_00051 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP010302_00051 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP010302_00051 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP010302_00051 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pCP010302_00052 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pCP010302_00053 - 1932 2e-16 59.6 0.8 1 3 1.7e-19 6e-16 58.1 0.1 57 245 1018 1273 936 1314 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP010302_00053 - 1932 2e-16 59.6 0.8 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP010302_00053 - 1932 2e-16 59.6 0.8 3 3 1.1 3.9e+03 -3.8 0.0 172 199 1879 1907 1860 1915 0.75 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP010302_00053 - 1932 5.5e-08 33.0 8.4 1 2 1.5e-11 5.5e-08 33.0 8.4 2 148 1000 1212 999 1243 0.71 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP010302_00053 - 1932 5.5e-08 33.0 8.4 2 2 0.38 1.4e+03 -0.8 5.3 36 121 1801 1904 1749 1929 0.62 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP010302_00053 - 1932 9.1e-07 29.2 0.2 1 2 0.16 5.7e+02 0.9 0.0 45 73 1077 1105 1029 1108 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP010302_00053 - 1932 9.1e-07 29.2 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP010302_00053 - 1932 1.1e-05 25.3 1.8 1 2 3.3e-07 0.0012 18.7 0.3 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP010302_00053 - 1932 1.1e-05 25.3 1.8 2 2 0.15 5.4e+02 0.2 0.1 120 143 1884 1909 1831 1929 0.67 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP010302_00053 - 1932 3.8e-05 24.1 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP010302_00053 - 1932 3.8e-05 24.1 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 664 701 655 716 0.65 Eco57I restriction-modification methylase HTH_3 PF01381.22 55 pCP010302_00054 - 314 4.7e-06 26.6 0.0 1 2 3.1e-07 0.00046 20.2 0.0 2 29 3 30 2 30 0.90 Helix-turn-helix HTH_3 PF01381.22 55 pCP010302_00054 - 314 4.7e-06 26.6 0.0 2 2 0.032 48 4.1 0.0 26 55 118 147 92 147 0.84 Helix-turn-helix HTH_19 PF12844.7 65 pCP010302_00054 - 314 1.1e-05 25.3 0.2 1 2 0.0044 6.6 6.8 0.0 11 32 9 30 1 46 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 pCP010302_00054 - 314 1.1e-05 25.3 0.2 2 2 7.6e-06 0.011 15.7 0.0 27 64 116 152 89 153 0.88 Helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP010302_00054 - 314 0.00047 20.2 0.0 1 2 5.4e-05 0.081 13.0 0.0 11 49 10 47 2 51 0.77 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP010302_00054 - 314 0.00047 20.2 0.0 2 2 0.025 37 4.5 0.0 41 64 131 154 124 155 0.83 Bacteriophage CI repressor helix-turn-helix domain HTH_23 PF13384.6 50 pCP010302_00054 - 314 0.0075 16.0 0.0 1 2 3e-05 0.045 13.6 0.0 16 37 7 30 1 36 0.86 Homeodomain-like domain HTH_23 PF13384.6 50 pCP010302_00054 - 314 0.0075 16.0 0.0 2 2 0.89 1.3e+03 -0.7 0.0 35 49 54 67 52 67 0.85 Homeodomain-like domain HTH_24 PF13412.6 48 pCP010302_00054 - 314 0.0076 15.8 0.0 1 2 7e-05 0.11 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP010302_00054 - 314 0.0076 15.8 0.0 2 2 0.25 3.7e+02 0.8 0.0 26 39 98 111 94 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 pCP010302_00054 - 314 0.012 15.7 0.0 1 2 2.4e-05 0.037 14.2 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain HTH_28 PF13518.6 52 pCP010302_00054 - 314 0.012 15.7 0.0 2 2 8.8 1.3e+04 -3.6 0.0 34 44 58 67 55 68 0.76 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 pCP010302_00054 - 314 0.022 14.6 0.1 1 2 4.1e-05 0.062 13.2 0.0 4 36 5 37 2 54 0.77 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 pCP010302_00054 - 314 0.022 14.6 0.1 2 2 4.2 6.2e+03 -2.8 0.1 38 47 290 299 289 300 0.85 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_26 PF13443.6 63 pCP010302_00054 - 314 0.045 14.2 0.0 1 2 0.00011 0.16 12.4 0.0 3 30 3 30 1 38 0.88 Cro/C1-type HTH DNA-binding domain HTH_26 PF13443.6 63 pCP010302_00054 - 314 0.045 14.2 0.0 2 2 4.9 7.2e+03 -2.5 0.0 25 52 116 142 111 148 0.76 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.7 51 pCP010302_00054 - 314 0.1 12.8 0.0 1 2 0.11 1.7e+02 2.5 0.0 5 16 3 14 2 16 0.90 Helix-turn-helix domain HTH_17 PF12728.7 51 pCP010302_00054 - 314 0.1 12.8 0.0 2 2 0.00093 1.4 9.2 0.0 5 27 14 36 11 42 0.83 Helix-turn-helix domain HTH_31 PF13560.6 64 pCP010302_00054 - 314 0.11 12.8 0.0 1 1 0.00013 0.2 12.0 0.0 12 33 8 29 2 40 0.88 Helix-turn-helix domain Phage_AlpA PF05930.12 51 pCP010302_00054 - 314 0.15 11.9 0.0 1 2 0.013 20 5.1 0.0 6 19 2 15 1 18 0.89 Prophage CP4-57 regulatory protein (AlpA) Phage_AlpA PF05930.12 51 pCP010302_00054 - 314 0.15 11.9 0.0 2 2 0.0027 4 7.3 0.0 5 23 12 30 11 35 0.88 Prophage CP4-57 regulatory protein (AlpA) Sigma70_r4_2 PF08281.12 54 pCP010302_00054 - 314 0.16 11.7 0.0 1 1 0.00023 0.35 10.6 0.0 25 46 9 30 5 30 0.93 Sigma-70, region 4 PcfJ PF14284.6 144 pCP011017_00002 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP011017_00002 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain Topoisom_bac PF01131.20 413 pCP011017_00003 - 730 1.7e-97 327.1 8.2 1 1 2.2e-100 2.3e-97 326.6 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP011017_00003 - 730 4.7e-12 46.0 2.7 1 2 6.1e-15 6.4e-12 45.6 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP011017_00003 - 730 4.7e-12 46.0 2.7 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP011017_00003 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP011017_00003 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP011017_00003 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP011017_00003 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP011017_00003 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP011017_00003 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP011017_00003 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP011017_00003 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP011017_00003 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pCP011017_00003 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pCP011017_00003 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pCP011017_00003 - 730 0.055 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP011017_00003 - 730 0.055 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP011017_00003 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP011017_00003 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pCP011017_00003 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pCP011017_00003 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP011017_00003 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pCP011017_00003 - 730 0.42 10.8 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP011017_00003 - 730 0.42 10.8 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP011017_00003 - 730 0.42 10.8 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP011017_00003 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP011017_00003 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP011017_00003 - 730 0.63 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP011017_00003 - 730 0.63 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP011017_00003 - 730 0.73 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP011017_00003 - 730 0.73 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP011017_00003 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP011017_00003 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP011017_00003 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP011017_00003 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 pCP011017_00004 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP011017_00004 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 pCP011017_00006 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCP011017_00006 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP011017_00006 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP011017_00006 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP011017_00006 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP011017_00006 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 pCP011017_00007 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 pCP011017_00008 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pCP011017_00008 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pCP011017_00008 - 145 0.08 12.7 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP011017_00008 - 145 3.9 7.4 5.6 1 2 0.00081 3.6 7.5 2.3 36 49 29 42 2 47 0.91 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP011017_00008 - 145 3.9 7.4 5.6 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 pCP011017_00009 - 603 7e-106 354.8 0.1 1 1 1.6e-109 9.7e-106 354.3 0.1 3 461 94 565 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP011017_00009 - 603 9.6e-25 87.0 0.0 1 1 3.5e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP011017_00009 - 603 7.2e-16 58.1 0.0 1 2 1.2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP011017_00009 - 603 7.2e-16 58.1 0.0 2 2 2.2e-14 1.3e-10 40.8 0.0 187 370 347 532 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain T2SSE PF00437.20 273 pCP011017_00010 - 335 1.5e-54 184.9 0.0 1 1 3.1e-57 1.7e-54 184.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP011017_00010 - 335 7e-05 23.4 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP011017_00010 - 335 0.00011 21.6 0.0 1 1 3.1e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP011017_00010 - 335 0.00029 20.4 0.0 1 1 9.1e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP011017_00010 - 335 0.0014 18.9 0.0 1 1 4.6e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 pCP011017_00010 - 335 0.0014 18.4 0.0 1 1 4e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pCP011017_00010 - 335 0.0025 17.6 0.0 1 1 9.5e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pCP011017_00010 - 335 0.0035 17.3 0.0 1 1 1.3e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP011017_00010 - 335 0.0055 15.7 0.0 1 1 1.4e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP011017_00010 - 335 0.0073 16.2 0.0 1 1 2.2e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP011017_00010 - 335 0.0087 15.4 0.0 1 1 2.5e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP011017_00010 - 335 0.0092 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pCP011017_00010 - 335 0.019 15.1 0.0 1 1 6.3e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 pCP011017_00010 - 335 0.021 13.8 0.0 1 1 6.1e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 pCP011017_00010 - 335 0.022 14.8 0.1 1 1 9.7e-05 0.054 13.5 0.0 5 50 147 186 135 244 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 pCP011017_00010 - 335 0.024 14.4 0.0 1 1 9e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 pCP011017_00010 - 335 0.026 14.2 0.0 1 1 9.6e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pCP011017_00010 - 335 0.037 13.5 0.0 1 1 0.00011 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 pCP011017_00010 - 335 0.039 14.0 0.1 1 1 0.00019 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 pCP011017_00010 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP011017_00010 - 335 0.046 13.0 0.0 1 1 0.00014 0.08 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin RNA_helicase PF00910.22 107 pCP011017_00010 - 335 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase PRK PF00485.18 197 pCP011017_00010 - 335 0.056 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP011017_00010 - 335 0.066 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP011017_00010 - 335 0.074 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pCP011017_00010 - 335 0.088 12.7 0.0 1 1 0.00035 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pCP011017_00010 - 335 0.097 12.6 0.5 1 1 0.00043 0.24 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 pCP011017_00010 - 335 0.11 12.4 0.1 1 1 0.00041 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 pCP011017_00010 - 335 0.13 12.8 0.1 1 1 0.00069 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 pCP011017_00010 - 335 0.15 11.7 0.0 1 1 0.00042 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP011017_00010 - 335 0.15 11.8 0.0 1 1 0.00043 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pCP011017_00010 - 335 0.35 11.3 3.8 1 2 2.6 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 pCP011017_00010 - 335 0.35 11.3 3.8 2 2 0.00066 0.37 11.3 1.3 22 37 163 178 160 184 0.87 AAA domain TrbI PF03743.14 187 pCP011017_00011 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.4e+03 -3.4 0.3 136 154 140 166 120 172 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pCP011017_00011 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP011017_00011 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease CagX PF03524.15 211 pCP011017_00012 - 296 4.2e-56 190.0 1.7 1 1 1.1e-59 6.7e-56 189.3 1.7 2 211 31 271 30 271 0.92 Conjugal transfer protein TraE PF05309.11 182 pCP011017_00012 - 296 0.022 14.2 0.1 1 1 6.6e-06 0.039 13.3 0.1 107 171 89 154 86 161 0.83 TraE protein Rho_RNA_bind PF07497.12 73 pCP011017_00012 - 296 0.068 13.0 0.0 1 2 1.5 9.2e+03 -3.4 0.0 9 22 79 92 76 97 0.79 Rho termination factor, RNA-binding domain Rho_RNA_bind PF07497.12 73 pCP011017_00012 - 296 0.068 13.0 0.0 2 2 3.3e-05 0.2 11.6 0.0 21 49 241 269 232 288 0.84 Rho termination factor, RNA-binding domain VirB8 PF04335.13 214 pCP011017_00013 - 219 1.6e-52 178.5 0.5 1 1 1.9e-56 1.7e-52 178.4 0.5 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pCP011017_00013 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 pCP011017_00014 - 54 0.034 13.1 1.0 1 1 5.2e-06 0.031 13.2 1.0 3 25 3 24 1 53 0.80 Treponema clustered lipoprotein (Trep_dent_lipo) La_HTH_kDCL PF18177.1 90 pCP011017_00014 - 54 0.19 12.0 0.0 1 1 3.6e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain PsbT PF01405.17 29 pCP011017_00014 - 54 1.1 9.1 5.2 1 1 0.00027 1.6 8.6 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 pCP011017_00015 - 331 2.1e-30 106.1 33.3 1 2 3.5e-34 2.1e-30 106.1 33.3 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP011017_00015 - 331 2.1e-30 106.1 33.3 2 2 0.75 4.5e+03 -2.8 0.1 84 84 289 289 259 327 0.50 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP011017_00015 - 331 0.065 13.0 0.9 1 2 0.4 2.4e+03 -1.6 0.1 39 51 70 82 61 114 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP011017_00015 - 331 0.065 13.0 0.9 2 2 3.6e-05 0.22 11.4 0.1 37 81 243 287 222 299 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 pCP011017_00015 - 331 0.17 11.9 0.0 1 1 5.1e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) T4SS PF07996.11 197 pCP011017_00016 - 329 1e-28 101.1 13.2 1 1 4.1e-32 1.5e-28 100.6 13.2 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP011017_00016 - 329 0.0033 17.5 0.6 1 2 0.29 1e+03 -0.1 0.0 29 54 133 158 114 172 0.79 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP011017_00016 - 329 0.0033 17.5 0.6 2 2 5.9e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 pCP011017_00016 - 329 0.013 16.1 0.8 1 2 0.97 3.5e+03 -1.3 0.0 48 70 110 132 100 162 0.58 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP011017_00016 - 329 0.013 16.1 0.8 2 2 1e-05 0.036 14.7 0.2 31 84 208 270 197 307 0.84 von Willebrand factor type A domain Tissue_fac PF01108.17 107 pCP011017_00016 - 329 0.043 13.7 0.0 1 1 2.5e-05 0.089 12.6 0.0 2 64 78 148 77 182 0.71 Tissue factor AATF-Che1 PF13339.6 139 pCP011017_00016 - 329 0.45 11.2 11.4 1 2 0.028 99 3.6 0.6 49 135 108 145 42 182 0.62 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP011017_00016 - 329 0.45 11.2 11.4 2 2 0.00011 0.41 11.3 4.5 49 116 225 306 205 328 0.68 Apoptosis antagonizing transcription factor IF2_N PF04760.15 54 pCP011017_00017 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP011017_00017 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP011017_00017 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP011017_00017 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP011017_00017 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP011017_00017 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP011017_00017 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 pCP011017_00018 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family PBECR2 PF18810.1 119 pCP011017_00019 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 Phage_pRha PF09669.10 88 pCP011017_00020 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 pCP011017_00020 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 pCP011017_00020 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) CagE_TrbE_VirB PF03135.14 206 pCP011017_00021 - 922 2.4e-51 174.8 0.3 1 1 9.2e-55 5.5e-51 173.6 0.3 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP011017_00021 - 922 6.9e-21 74.3 0.9 1 1 2e-24 1.2e-20 73.5 0.9 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pCP011017_00021 - 922 0.046 13.2 0.1 1 1 1.6e-05 0.097 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated TrbC PF04956.13 99 pCP011017_00022 - 87 6.2e-13 48.8 6.8 1 1 7.4e-17 6.6e-13 48.7 6.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP011017_00022 - 87 0.61 9.9 6.3 1 1 0.00015 1.3 8.9 6.2 108 135 60 87 10 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pCP011017_00024 - 135 0.00056 20.0 0.0 1 2 7.8e-08 0.0014 18.8 0.0 4 53 7 71 4 93 0.79 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP011017_00024 - 135 0.00056 20.0 0.0 2 2 0.0096 1.7e+02 2.5 0.0 12 35 55 77 53 106 0.80 CRISPR associated protein Cas2 Resolvase PF00239.21 146 pCP011017_00025 - 204 2.5e-34 118.5 0.6 1 1 7.4e-38 3.3e-34 118.1 0.6 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP011017_00025 - 204 0.025 14.3 0.6 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP011017_00025 - 204 0.025 14.3 0.6 2 3 0.0021 9.6 6.1 0.0 2 36 117 152 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP011017_00025 - 204 0.025 14.3 0.6 3 3 0.0036 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP011017_00025 - 204 0.05 13.6 4.8 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP011017_00025 - 204 0.05 13.6 4.8 2 3 1.5 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP011017_00025 - 204 0.05 13.6 4.8 3 3 0.024 1.1e+02 3.0 0.1 39 55 159 175 153 177 0.91 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCP011017_00025 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP011017_00025 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP011017_00025 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat AAA_25 PF13481.6 194 pCP011017_00026 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP011017_00026 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP011017_00026 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP011017_00026 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP011017_00026 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pCP011017_00026 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 pCP011017_00026 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pCP011017_00026 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP011017_00026 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pCP011017_00026 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pCP011017_00026 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP011017_00026 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP011017_00026 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) HicA_toxin PF07927.12 58 pCP011017_00027 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pCP011017_00028 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 pCP011017_00030 - 90 0.0016 18.5 0.4 1 1 1e-07 0.0018 18.3 0.4 34 88 19 75 17 87 0.85 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF4223 PF13978.6 54 pCP011017_00031 - 97 0.0067 16.4 0.0 1 1 1.7e-06 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) nec1 PF10379.9 184 pCP011017_00031 - 97 0.1 12.1 0.0 1 1 1.6e-05 0.14 11.6 0.0 65 105 56 94 35 96 0.80 Virulence protein nec1 Toprim_3 PF13362.6 95 pCP011017_00032 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pCP011017_00032 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pCP011017_00032 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pCP011017_00032 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP011017_00032 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold ZYG-11_interact PF05884.12 295 pCP011017_00034 - 93 0.22 10.9 0.4 1 1 1.4e-05 0.26 10.7 0.4 38 84 5 60 2 74 0.78 Interactor of ZYG-11 HTH_46 PF15977.5 68 pCP011017_00035 - 183 0.00021 21.2 5.7 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP011017_00035 - 183 0.00021 21.2 5.7 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP011017_00035 - 183 0.00021 21.2 5.7 3 3 3.4e-05 0.12 12.4 0.6 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP011017_00035 - 183 0.046 13.8 1.9 1 1 1.9e-05 0.067 13.3 1.3 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) DndE PF08870.11 112 pCP011017_00035 - 183 0.29 11.4 5.6 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP011017_00035 - 183 0.29 11.4 5.6 2 2 0.00014 0.5 10.7 0.8 1 48 71 118 71 159 0.87 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 pCP011017_00035 - 183 0.3 11.4 6.2 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP011017_00035 - 183 0.3 11.4 6.2 2 2 0.013 46 4.4 0.1 45 99 102 154 94 161 0.75 NLRC4 helical domain U3_assoc_6 PF08640.11 83 pCP011017_00035 - 183 0.32 11.1 8.7 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP011017_00035 - 183 0.32 11.1 8.7 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP011017_00035 - 183 0.32 11.1 8.7 3 3 0.00029 1 9.4 0.3 8 32 103 127 102 134 0.90 U3 small nucleolar RNA-associated protein 6 Relaxase PF03432.14 242 pCP011017_00036 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP011017_00036 - 462 4.7e-10 39.5 7.4 2 2 0.0071 1.3e+02 2.0 5.4 119 183 326 395 318 430 0.69 Relaxase/Mobilisation nuclease domain Acetyltransf_7 PF13508.7 76 pCP011017_00037 - 234 0.0002 21.7 0.0 1 1 6.3e-08 0.00038 20.8 0.0 29 75 79 143 36 144 0.68 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pCP011017_00037 - 234 0.0029 17.8 0.0 1 1 1.2e-06 0.0072 16.5 0.0 64 92 81 109 56 142 0.78 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 pCP011017_00037 - 234 0.0083 16.2 0.3 1 1 2.6e-06 0.015 15.3 0.3 24 67 171 214 154 218 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 NYN PF01936.18 147 pCP011017_00038 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 pCP011017_00038 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 pCP011017_00038 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 pCP011017_00038 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) SNF2_N PF00176.23 350 pCP011017_00039 - 1932 3.1e-16 59.1 2.7 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP011017_00039 - 1932 3.1e-16 59.1 2.7 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP011017_00039 - 1932 3.1e-16 59.1 2.7 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1876 1924 1846 1925 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP011017_00039 - 1932 4.9e-08 33.2 8.3 1 2 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP011017_00039 - 1932 4.9e-08 33.2 8.3 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1799 1910 1725 1932 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP011017_00039 - 1932 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP011017_00039 - 1932 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP011017_00039 - 1932 9.2e-06 25.5 1.8 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP011017_00039 - 1932 9.2e-06 25.5 1.8 2 2 0.12 4.2e+02 0.6 0.0 119 150 1883 1916 1828 1931 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP011017_00039 - 1932 3.7e-05 24.2 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP011017_00039 - 1932 3.7e-05 24.2 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 664 701 655 716 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 pCP011017_00040 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 pCP011017_00040 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal AAA_31 PF13614.6 177 pCP011017_00041 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP011017_00041 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP011017_00041 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP011017_00041 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP011017_00041 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP011017_00041 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pCP011017_00042 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP011017_00042 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 pCP011017_00043 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP011017_00043 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP011017_00043 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP011017_00043 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP011017_00043 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP011017_00043 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 pCP011017_00044 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP011017_00044 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP011017_00044 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pCP011017_00044 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pCP011017_00044 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pCP011017_00044 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP011017_00044 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP011017_00044 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP011017_00044 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 pCP011017_00045 - 117 0.0057 16.0 1.4 1 3 6.3e-07 0.0057 16.0 1.4 18 43 3 28 1 30 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCP011017_00045 - 117 0.0057 16.0 1.4 2 3 1 9e+03 -3.8 0.3 16 22 52 58 51 61 0.49 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCP011017_00045 - 117 0.0057 16.0 1.4 3 3 0.77 6.9e+03 -3.4 0.9 17 29 76 88 74 92 0.65 Putative Flagellin, Flp1-like, domain vMSA PF00695.19 400 pCP011017_00045 - 117 1.9 7.5 5.4 1 1 0.00025 2.3 7.2 5.4 328 398 9 85 1 87 0.72 Major surface antigen from hepadnavirus CtsR_C PF17727.1 72 pCP011017_00046 - 102 0.041 14.0 0.3 1 2 0.00017 3 8.0 0.0 3 38 31 66 27 73 0.86 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP011017_00046 - 102 0.041 14.0 0.3 2 2 0.0027 48 4.2 0.0 28 47 74 93 71 100 0.84 CtsR C-terminal dimerization domain W2 PF02020.18 79 pCP011017_00047 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pCP011017_00047 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pCP011017_00047 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain DUF5442 PF17514.2 107 pCP011017_00049 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pCP011017_00049 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) EFG_C PF00679.24 89 pCP011017_00050 - 162 1.3e-17 63.6 0.0 1 1 2e-21 1.8e-17 63.2 0.0 1 83 57 138 57 141 0.97 Elongation factor G C-terminus EFG_IV PF03764.18 121 pCP011017_00050 - 162 4.1e-08 33.0 0.0 1 1 6.6e-12 5.9e-08 32.5 0.0 67 120 2 54 1 55 0.95 Elongation factor G, domain IV GTP_EFTU PF00009.27 194 pCP013033_00002 - 639 2.5e-59 200.1 0.3 1 1 1.9e-62 3.4e-59 199.6 0.3 2 191 2 237 1 240 0.93 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP013033_00002 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP013033_00002 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP013033_00002 - 639 9.3e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP013033_00002 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP013033_00002 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP013033_00002 - 639 0.00029 21.2 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP013033_00002 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP013033_00002 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP013033_00002 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 pCP013033_00002 - 639 0.15 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B LysE PF01810.18 193 pCP013033_00003 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP013033_00003 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP013033_00003 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 pCP013033_00003 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 pCP013033_00003 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 pCP013033_00003 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 pCP013033_00003 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 pCP013033_00003 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP013033_00003 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP013033_00003 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP013033_00003 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 pCP013033_00003 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 pCP013033_00004 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP013033_00004 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP013033_00004 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP013033_00004 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP013033_00004 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP013033_00004 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pCP013033_00005 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP013033_00005 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pCP013033_00006 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP013033_00006 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP013033_00006 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP013033_00006 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP013033_00006 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP013033_00006 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pCP013033_00007 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pCP013033_00008 - 1931 2e-16 59.7 0.9 1 3 1.6e-19 5.7e-16 58.2 0.1 57 245 1017 1272 935 1313 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP013033_00008 - 1931 2e-16 59.7 0.9 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP013033_00008 - 1931 2e-16 59.7 0.9 3 3 1.1 3.9e+03 -3.8 0.0 172 199 1878 1906 1859 1914 0.75 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP013033_00008 - 1931 6.5e-08 32.8 8.6 1 2 1.8e-11 6.5e-08 32.8 8.6 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP013033_00008 - 1931 6.5e-08 32.8 8.6 2 2 0.38 1.4e+03 -0.8 5.3 36 121 1800 1903 1748 1928 0.62 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP013033_00008 - 1931 2.5e-06 27.8 1.7 1 3 5 1.8e+04 -4.1 0.1 38 61 210 239 197 241 0.56 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP013033_00008 - 1931 2.5e-06 27.8 1.7 2 3 0.16 5.6e+02 0.9 0.0 45 73 1076 1104 1028 1108 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP013033_00008 - 1931 2.5e-06 27.8 1.7 3 3 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP013033_00008 - 1931 1.1e-05 25.2 2.0 1 2 3.1e-07 0.0011 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP013033_00008 - 1931 1.1e-05 25.2 2.0 2 2 0.15 5.4e+02 0.2 0.1 120 143 1883 1908 1830 1928 0.67 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP013033_00008 - 1931 2.7e-05 24.6 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP013033_00008 - 1931 2.7e-05 24.6 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase HTH_19 PF12844.7 65 pCP013033_00009 - 314 5.9e-05 23.0 0.2 1 2 0.029 44 4.2 0.0 11 31 9 29 2 42 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 pCP013033_00009 - 314 5.9e-05 23.0 0.2 2 2 7e-06 0.01 15.8 0.0 27 64 116 152 91 153 0.90 Helix-turn-helix domain HTH_3 PF01381.22 55 pCP013033_00009 - 314 0.0013 18.8 0.0 1 2 7e-06 0.01 15.8 0.0 2 29 3 30 2 30 0.85 Helix-turn-helix HTH_3 PF01381.22 55 pCP013033_00009 - 314 0.0013 18.8 0.0 2 2 0.57 8.6e+02 0.1 0.0 26 55 118 147 107 147 0.85 Helix-turn-helix Phage_CI_repr PF07022.13 65 pCP013033_00009 - 314 0.0024 17.9 0.0 1 2 0.00012 0.18 11.9 0.1 14 49 12 47 8 50 0.82 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP013033_00009 - 314 0.0024 17.9 0.0 2 2 0.055 82 3.4 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 pCP013033_00009 - 314 0.0046 16.5 0.0 1 2 4.2e-05 0.062 12.9 0.1 17 34 10 27 9 27 0.94 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP013033_00009 - 314 0.0046 16.5 0.0 2 2 0.25 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding Imm3 PF14425.6 119 pCP013033_00009 - 314 0.028 14.5 0.2 1 1 3.8e-05 0.057 13.5 0.2 26 113 18 104 1 109 0.73 Immunity protein Imm3 YdaS_antitoxin PF15943.5 65 pCP013033_00009 - 314 0.028 14.3 0.1 1 2 7.5e-05 0.11 12.3 0.0 10 36 12 37 2 49 0.79 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 pCP013033_00009 - 314 0.028 14.3 0.1 2 2 2.1 3.2e+03 -1.9 0.1 38 47 290 299 289 300 0.87 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_AsnC-type PF13404.6 42 pCP013033_00009 - 314 0.041 13.7 0.1 1 2 7.3e-05 0.11 12.3 0.0 17 34 10 27 9 29 0.94 AsnC-type helix-turn-helix domain HTH_AsnC-type PF13404.6 42 pCP013033_00009 - 314 0.041 13.7 0.1 2 2 5.4 8e+03 -3.2 0.0 27 36 99 108 98 110 0.81 AsnC-type helix-turn-helix domain Crp PF00325.20 32 pCP013033_00009 - 314 0.053 13.2 0.0 1 1 6.4e-05 0.095 12.4 0.0 1 15 9 23 9 27 0.89 Bacterial regulatory proteins, crp family HTH_28 PF13518.6 52 pCP013033_00009 - 314 0.054 13.6 0.0 1 1 8.9e-05 0.13 12.4 0.0 13 32 11 30 9 32 0.94 Helix-turn-helix domain HTH_23 PF13384.6 50 pCP013033_00009 - 314 0.072 12.9 0.0 1 1 0.00011 0.17 11.7 0.0 17 37 10 30 1 36 0.86 Homeodomain-like domain HTH_Mga PF08280.11 60 pCP013033_00009 - 314 0.097 12.7 2.9 1 3 0.0012 1.8 8.7 0.2 20 37 10 27 6 30 0.88 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP013033_00009 - 314 0.097 12.7 2.9 2 3 0.056 83 3.3 0.0 25 59 41 75 32 76 0.80 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP013033_00009 - 314 0.097 12.7 2.9 3 3 7.7 1.2e+04 -3.5 0.0 46 50 94 98 86 105 0.47 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.6 52 pCP013033_00009 - 314 0.21 11.0 0.1 1 1 0.00026 0.39 10.2 0.1 26 47 10 30 5 33 0.89 Helix-turn-helix domain of transposase family ISL3 Relaxase PF03432.14 242 pCP013033_00010 - 462 5.1e-10 39.4 7.2 1 2 2.9e-14 5.1e-10 39.4 7.2 48 228 119 296 70 309 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP013033_00010 - 462 5.1e-10 39.4 7.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pCP013033_00011 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP013033_00011 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP013033_00011 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP013033_00011 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP013033_00011 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP013033_00011 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP013033_00011 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pCP013033_00011 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP013033_00011 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 pCP013033_00011 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP013033_00011 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain Sds3 PF08598.11 218 pCP013033_00012 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pCP013033_00012 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP013033_00012 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pCP013033_00012 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP013033_00012 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 pCP013033_00014 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pCP013033_00014 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pCP013033_00015 - 409 3.6e-08 33.7 0.0 1 1 1.6e-11 7.3e-08 32.7 0.0 3 93 270 374 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pCP013033_00015 - 409 0.083 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain 5_3_exonuc PF01367.20 97 pCP013033_00015 - 409 0.083 13.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP013033_00015 - 409 0.083 13.5 4.7 2 2 0.0001 0.46 11.1 0.4 15 81 321 383 319 404 0.72 5'-3' exonuclease, C-terminal SAM fold Toprim_4 PF13662.6 89 pCP013033_00015 - 409 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain DUF4223 PF13978.6 54 pCP013033_00016 - 87 0.0072 16.3 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pCP013033_00016 - 87 0.0072 16.3 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pCP013033_00016 - 87 0.12 12.4 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain TOPRIM_C PF16898.5 128 pCP013033_00017 - 69 0.029 14.7 1.5 1 1 1.7e-06 0.031 14.6 1.5 63 124 8 68 2 69 0.88 C-terminal associated domain of TOPRIM Pkinase PF00069.25 264 pCP013033_00018 - 390 2.6e-30 105.7 7.7 1 1 1.2e-33 4.2e-30 105.0 7.7 5 202 156 356 153 390 0.81 Protein kinase domain Pkinase_Tyr PF07714.17 259 pCP013033_00018 - 390 1.6e-26 93.2 0.7 1 1 6.2e-30 2.2e-26 92.7 0.7 6 163 157 308 154 380 0.85 Protein tyrosine kinase Pkinase_fungal PF17667.1 408 pCP013033_00018 - 390 4.7e-06 25.6 0.7 1 1 2e-09 7e-06 25.1 0.7 314 364 254 301 240 319 0.77 Fungal protein kinase DUF2841 PF11001.8 124 pCP013033_00018 - 390 0.0036 17.4 0.7 1 2 2.2 7.8e+03 -3.1 0.0 10 56 22 69 17 74 0.59 Protein of unknown function (DUF2841) DUF2841 PF11001.8 124 pCP013033_00018 - 390 0.0036 17.4 0.7 2 2 3.3e-06 0.012 15.7 0.7 15 88 179 263 162 323 0.71 Protein of unknown function (DUF2841) ORC6 PF05460.13 357 pCP013033_00018 - 390 0.011 15.0 0.2 1 1 4.6e-06 0.016 14.5 0.2 192 282 163 254 117 268 0.79 Origin recognition complex subunit 6 (ORC6) HicB_lk_antitox PF15919.5 123 pCP013033_00020 - 72 3.6e-09 36.8 0.0 1 1 4.2e-13 3.8e-09 36.7 0.0 3 60 5 61 3 71 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 pCP013033_00020 - 72 0.065 12.6 0.0 1 1 7.9e-06 0.071 12.5 0.0 12 60 21 69 15 72 0.92 IRSp53/MIM homology domain AAA_25 PF13481.6 194 pCP013033_00021 - 597 1.8e-15 57.0 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP013033_00021 - 597 0.00087 18.7 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP013033_00021 - 597 0.00087 18.7 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP013033_00021 - 597 0.0012 18.6 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP013033_00021 - 597 0.0012 18.6 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 pCP013033_00021 - 597 0.0035 17.1 0.0 1 1 2.5e-06 0.0073 16.0 0.0 5 122 36 172 32 207 0.72 AAA domain ATPase PF06745.13 231 pCP013033_00021 - 597 0.011 15.1 0.1 1 2 2.1e-05 0.064 12.6 0.0 16 70 30 83 26 214 0.87 KaiC ATPase PF06745.13 231 pCP013033_00021 - 597 0.011 15.1 0.1 2 2 0.51 1.5e+03 -1.7 0.0 137 160 329 352 321 358 0.83 KaiC CbiA PF01656.23 128 pCP013033_00021 - 597 0.18 11.9 0.9 1 1 0.00018 0.53 10.4 1.0 1 29 35 63 35 537 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain GBR_NSP5 PF17580.2 176 pCP013033_00022 - 115 0.088 12.6 4.3 1 2 0.17 1.5e+03 -1.1 0.0 135 151 11 27 3 51 0.62 Group B Rotavirus Non-structural protein 5 GBR_NSP5 PF17580.2 176 pCP013033_00022 - 115 0.088 12.6 4.3 2 2 4.2e-06 0.038 13.8 2.0 17 64 52 99 34 106 0.78 Group B Rotavirus Non-structural protein 5 FeoB_associated PF12669.7 44 pCP013033_00022 - 115 0.4 11.1 1.6 1 2 0.00017 1.5 9.3 0.3 2 25 25 48 23 50 0.90 FeoB-associated Cys-rich membrane protein FeoB_associated PF12669.7 44 pCP013033_00022 - 115 0.4 11.1 1.6 2 2 0.12 1.1e+03 0.1 0.1 18 26 89 97 88 101 0.86 FeoB-associated Cys-rich membrane protein Resolvase PF00239.21 146 pCP013033_00024 - 204 1.6e-33 115.9 0.7 1 1 4.7e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP013033_00024 - 204 0.024 14.4 0.8 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP013033_00024 - 204 0.024 14.4 0.8 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP013033_00024 - 204 0.024 14.4 0.8 3 3 0.01 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP013033_00024 - 204 0.028 14.5 4.9 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP013033_00024 - 204 0.028 14.5 4.9 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP013033_00024 - 204 0.028 14.5 4.9 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCP013033_00024 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP013033_00024 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP013033_00024 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pCP013033_00025 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP013033_00025 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pCP013033_00025 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pCP013033_00027 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP013033_00027 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pCP013033_00028 - 922 2.1e-51 174.9 0.9 1 1 1.2e-54 5.2e-51 173.7 0.9 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP013033_00028 - 922 7.2e-21 74.2 1.2 1 1 2.8e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 pCP013033_00028 - 922 3.8e-07 29.3 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 pCP013033_00028 - 922 0.038 14.1 5.4 1 5 0.48 2.2e+03 -1.5 0.1 96 202 139 253 127 279 0.53 Helicase HerA, central domain DUF87 PF01935.17 227 pCP013033_00028 - 922 0.038 14.1 5.4 2 5 0.37 1.7e+03 -1.1 0.1 88 126 264 300 242 417 0.71 Helicase HerA, central domain DUF87 PF01935.17 227 pCP013033_00028 - 922 0.038 14.1 5.4 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 pCP013033_00028 - 922 0.038 14.1 5.4 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 pCP013033_00028 - 922 0.038 14.1 5.4 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain Phage_pRha PF09669.10 88 pCP013033_00029 - 185 6.7e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCP013033_00029 - 185 0.0015 18.6 0.0 1 1 8.6e-07 0.0031 17.6 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pCP013033_00029 - 185 0.026 14.1 0.3 1 2 0.05 1.8e+02 1.6 0.1 80 118 33 71 5 80 0.74 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pCP013033_00029 - 185 0.026 14.1 0.3 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pCP013033_00029 - 185 0.081 12.9 0.1 1 1 6.1e-05 0.22 11.5 0.0 77 131 80 130 69 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pCP013033_00029 - 185 0.83 9.7 7.1 1 3 0.019 69 3.6 0.1 40 53 12 25 3 29 0.83 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP013033_00029 - 185 0.83 9.7 7.1 2 3 0.0022 7.9 6.6 0.9 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP013033_00029 - 185 0.83 9.7 7.1 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 DUF3895 PF13034.6 76 pCP013033_00030 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 pCP013033_00030 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) SSB PF00436.25 104 pCP013033_00031 - 141 7e-25 87.1 0.1 1 1 4.9e-29 8.8e-25 86.8 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pCP013033_00032 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP013033_00032 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP013033_00032 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP013033_00032 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP013033_00032 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP013033_00032 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP013033_00032 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pCP013033_00033 - 323 4.7e-28 98.9 14.1 1 1 2.7e-31 6.1e-28 98.6 14.1 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP013033_00033 - 323 0.0059 16.7 0.7 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP013033_00033 - 323 0.0059 16.7 0.7 2 2 9.1e-06 0.02 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP013033_00033 - 323 0.011 16.4 5.4 1 3 0.067 1.5e+02 3.0 0.3 92 135 104 145 41 149 0.59 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP013033_00033 - 323 0.011 16.4 5.4 2 3 0.12 2.6e+02 2.2 0.5 52 135 111 145 93 185 0.58 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP013033_00033 - 323 0.011 16.4 5.4 3 3 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pCP013033_00033 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pCP013033_00033 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pCP013033_00033 - 323 0.069 13.8 0.9 1 2 2.2 4.9e+03 -1.8 0.0 55 72 124 141 101 172 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP013033_00033 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain Allexi_40kDa PF05549.11 271 pCP013033_00033 - 323 0.81 9.1 5.0 1 2 0.21 4.8e+02 0.1 0.1 37 123 47 138 33 177 0.61 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pCP013033_00033 - 323 0.81 9.1 5.0 2 2 0.0002 0.46 10.0 1.6 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein THOC7 PF05615.13 132 pCP013033_00033 - 323 3 8.1 11.6 1 2 0.00072 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pCP013033_00033 - 323 3 8.1 11.6 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 DHR10 PF18595.1 117 pCP013033_00033 - 323 5.7 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pCP013033_00033 - 323 5.7 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain TrbL PF04610.14 215 pCP013033_00034 - 332 2.8e-30 105.7 31.4 1 2 4.7e-34 2.8e-30 105.7 31.4 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP013033_00034 - 332 2.8e-30 105.7 31.4 2 2 0.24 1.4e+03 -1.2 0.1 61 91 293 329 260 332 0.58 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP013033_00034 - 332 0.16 11.8 1.2 1 2 0.16 9.4e+02 -0.3 0.1 35 67 67 105 60 118 0.65 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP013033_00034 - 332 0.16 11.8 1.2 2 2 0.00011 0.68 9.8 0.1 28 81 238 288 209 301 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP013033_00034 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pCP013033_00035 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP013033_00035 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pCP013033_00036 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP013033_00036 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pCP013033_00037 - 295 2e-54 184.5 1.5 1 1 3.7e-58 3.3e-54 183.8 1.5 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP013033_00037 - 295 0.072 12.9 0.5 1 2 1.8e-05 0.16 11.8 0.0 1 51 1 51 1 66 0.92 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP013033_00037 - 295 0.072 12.9 0.5 2 2 1.1 9.7e+03 -3.7 0.1 50 62 130 142 124 149 0.68 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pCP013033_00038 - 391 3.3e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP013033_00038 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pCP013033_00039 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP013033_00039 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP013033_00039 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP013033_00039 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP013033_00039 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP013033_00039 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP013033_00039 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP013033_00039 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP013033_00039 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP013033_00039 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP013033_00039 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP013033_00039 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP013033_00039 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP013033_00039 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP013033_00039 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP013033_00039 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP013033_00039 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP013033_00039 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP013033_00039 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP013033_00039 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP013033_00039 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP013033_00039 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP013033_00039 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP013033_00039 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP013033_00039 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP013033_00039 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP013033_00039 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP013033_00039 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP013033_00039 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP013033_00039 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP013033_00039 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP013033_00039 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pCP013033_00040 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP013033_00040 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP013033_00040 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP013033_00040 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP013033_00040 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pCP013033_00041 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pCP013033_00041 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pCP013033_00041 - 145 0.08 12.7 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP013033_00041 - 145 3.9 7.4 5.6 1 2 0.00081 3.6 7.5 2.3 36 49 29 42 2 47 0.91 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP013033_00041 - 145 3.9 7.4 5.6 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pCP013033_00042 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pCP013033_00043 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCP013033_00043 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP013033_00043 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP013033_00043 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP013033_00043 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP013033_00043 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pCP013033_00045 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP013033_00045 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pCP013033_00046 - 730 1.7e-97 327.1 8.2 1 1 2.2e-100 2.3e-97 326.6 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP013033_00046 - 730 4.3e-12 46.1 2.6 1 2 6.1e-15 6.4e-12 45.6 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP013033_00046 - 730 4.3e-12 46.1 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP013033_00046 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP013033_00046 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP013033_00046 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP013033_00046 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP013033_00046 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP013033_00046 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP013033_00046 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP013033_00046 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP013033_00046 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pCP013033_00046 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pCP013033_00046 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pCP013033_00046 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP013033_00046 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP013033_00046 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP013033_00046 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pCP013033_00046 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pCP013033_00046 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP013033_00046 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pCP013033_00046 - 730 0.43 10.8 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP013033_00046 - 730 0.43 10.8 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP013033_00046 - 730 0.43 10.8 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP013033_00046 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP013033_00046 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP013033_00046 - 730 0.63 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP013033_00046 - 730 0.63 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP013033_00046 - 730 0.73 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP013033_00046 - 730 0.73 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP013033_00046 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP013033_00046 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP013033_00046 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP013033_00046 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type TrbC PF04956.13 99 pCP013035_00002 - 87 1.4e-15 57.3 6.9 1 1 1.8e-19 1.6e-15 57.1 6.9 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP013035_00002 - 87 0.041 13.8 3.5 1 1 5.4e-06 0.049 13.5 3.3 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pCP013035_00004 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP013035_00004 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pCP013035_00004 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase Resolvase PF00239.21 146 pCP013035_00005 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP013035_00005 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP013035_00005 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP013035_00005 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP013035_00005 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP013035_00005 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP013035_00005 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCP013035_00005 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP013035_00005 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP013035_00005 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat AAA_25 PF13481.6 194 pCP013035_00006 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pCP013035_00006 - 597 0.00073 19.0 0.0 1 2 1.6e-06 0.0042 16.5 0.0 16 117 30 136 23 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP013035_00006 - 597 0.00073 19.0 0.0 2 2 0.014 37 3.5 0.0 123 183 114 176 98 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP013035_00006 - 597 0.0032 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP013035_00006 - 597 0.0032 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pCP013035_00006 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP013035_00006 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pCP013035_00006 - 597 0.028 13.8 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pCP013035_00006 - 597 0.028 13.8 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pCP013035_00006 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pCP013035_00006 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pCP013035_00006 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain HicB_lk_antitox PF15919.5 123 pCP013035_00007 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 pCP013035_00009 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pCP013035_00009 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 pCP013035_00009 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) UBA_6 PF18039.1 42 pCP013035_00010 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 pCP013035_00010 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pCP013035_00010 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 pCP013035_00010 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region DUF4223 PF13978.6 54 pCP013035_00011 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pCP013035_00011 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pCP013035_00011 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 pCP013035_00012 - 408 2.3e-08 34.3 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pCP013035_00012 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 pCP013035_00012 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pCP013035_00012 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP013035_00012 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF2400 PF09674.10 227 pCP013035_00013 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pCP013035_00013 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Sds3 PF08598.11 218 pCP013035_00015 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pCP013035_00015 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP013035_00015 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pCP013035_00015 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP013035_00015 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 pCP013035_00016 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP013035_00016 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP013035_00016 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP013035_00016 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP013035_00016 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP013035_00016 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP013035_00016 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pCP013035_00016 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP013035_00016 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pCP013035_00016 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP013035_00016 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Relaxase PF03432.14 242 pCP013035_00017 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP013035_00017 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain Acetyltransf_7 PF13508.7 76 pCP013035_00018 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pCP013035_00018 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family SNF2_N PF00176.23 350 pCP013035_00019 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP013035_00019 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP013035_00019 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP013035_00019 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP013035_00019 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP013035_00019 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP013035_00019 - 1932 9.8e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP013035_00019 - 1932 9.8e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP013035_00019 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP013035_00019 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP013035_00019 - 1932 2.9e-05 24.5 0.6 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP013035_00019 - 1932 2.9e-05 24.5 0.6 2 2 1.5 5.3e+03 -2.0 0.0 41 81 661 701 646 719 0.66 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 pCP013035_00020 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 pCP013035_00021 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP013035_00021 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP013035_00021 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP013035_00021 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP013035_00021 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP013035_00021 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pCP013035_00022 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP013035_00022 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 pCP013035_00023 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP013035_00023 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP013035_00023 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP013035_00023 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP013035_00023 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP013035_00023 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 pCP013035_00024 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP013035_00024 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP013035_00024 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pCP013035_00024 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pCP013035_00024 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pCP013035_00024 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP013035_00024 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP013035_00024 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP013035_00024 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 pCP013035_00025 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCP013035_00025 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain Lip_prot_lig_C PF10437.9 85 pCP013035_00026 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCP013035_00026 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pCP013035_00026 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP013035_00026 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain W2 PF02020.18 79 pCP013035_00027 - 266 0.02 15.0 0.1 1 2 0.23 4.1e+03 -2.0 0.0 43 65 155 177 150 179 0.61 eIF4-gamma/eIF5/eIF2-epsilon W2 PF02020.18 79 pCP013035_00027 - 266 0.02 15.0 0.1 2 2 3.4e-06 0.061 13.5 0.0 38 77 180 240 176 242 0.86 eIF4-gamma/eIF5/eIF2-epsilon APH PF01636.23 240 pCP013035_00028 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pCP013035_00028 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pCP013035_00028 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pCP013035_00028 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family GTP_EFTU PF00009.27 194 pCP013035_00029 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP013035_00029 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP013035_00029 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP013035_00029 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP013035_00029 - 639 2.2e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP013035_00029 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP013035_00029 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP013035_00029 - 639 0.0095 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP013035_00029 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP013035_00029 - 639 0.049 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 pCP013035_00031 - 473 5.2e-05 23.2 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP013035_00031 - 473 0.022 14.7 4.0 1 2 0.14 1.2e+03 -0.7 0.2 12 60 218 271 211 299 0.70 Intein splicing domain Intein_splicing PF14890.6 134 pCP013035_00031 - 473 0.022 14.7 4.0 2 2 3.6e-06 0.032 14.2 1.5 37 125 311 444 264 453 0.74 Intein splicing domain Topoisom_bac PF01131.20 413 pCP013035_00032 - 676 9.9e-97 324.5 8.2 1 1 4.5e-100 1.4e-96 324.1 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP013035_00032 - 676 1.4e-12 47.7 0.4 1 2 3.1e-15 9.1e-12 45.1 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP013035_00032 - 676 1.4e-12 47.7 0.4 2 2 1.2 3.7e+03 -1.8 0.1 38 55 537 555 487 569 0.63 Toprim domain zinc_ribbon_9 PF14369.6 35 pCP013035_00032 - 676 0.05 13.9 0.7 1 2 2.9 8.5e+03 -2.9 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP013035_00032 - 676 0.05 13.9 0.7 2 2 2.7e-05 0.079 13.2 0.0 18 35 624 641 614 641 0.76 zinc-ribbon zf-C4_Topoisom PF01396.19 39 pCP013035_00032 - 676 0.057 13.2 2.4 1 1 5.4e-05 0.16 11.8 2.4 2 27 628 656 627 665 0.89 Topoisomerase DNA binding C4 zinc finger EF-hand_8 PF13833.6 55 pCP013035_00032 - 676 0.077 12.9 0.0 1 1 9.3e-05 0.28 11.1 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 pCP013035_00032 - 676 0.27 11.4 2.9 1 3 0.59 1.8e+03 -0.8 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP013035_00032 - 676 0.27 11.4 2.9 2 3 1.6 4.9e+03 -2.2 0.1 46 63 472 489 470 493 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP013035_00032 - 676 0.27 11.4 2.9 3 3 0.00026 0.78 10.0 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain Redoxin PF08534.10 147 pCP013035_00033 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP013035_00033 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 pCP013035_00035 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCP013035_00035 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP013035_00035 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP013035_00035 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP013035_00035 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP013035_00035 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 pCP013035_00036 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 pCP013035_00037 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pCP013035_00037 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pCP013035_00037 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP013035_00037 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP013035_00037 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 pCP013035_00038 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP013035_00038 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP013035_00038 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP013035_00038 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP013035_00038 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 pCP013035_00039 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP013035_00039 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP013035_00039 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP013035_00039 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP013035_00039 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP013035_00039 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP013035_00039 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP013035_00039 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP013035_00039 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP013035_00039 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP013035_00039 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP013035_00039 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP013035_00039 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP013035_00039 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP013035_00039 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP013035_00039 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP013035_00039 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP013035_00039 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP013035_00039 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP013035_00039 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP013035_00039 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP013035_00039 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP013035_00039 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP013035_00039 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP013035_00039 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP013035_00039 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP013035_00039 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP013035_00039 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP013035_00039 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP013035_00039 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP013035_00039 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP013035_00039 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 pCP013035_00040 - 390 3.1e-48 164.1 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 193 374 193 374 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP013035_00040 - 390 0.028 13.5 0.1 1 1 4.8e-06 0.043 12.9 0.1 31 81 321 371 304 376 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 pCP013035_00041 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP013035_00041 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP013035_00041 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 pCP013035_00042 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP013035_00042 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 pCP013035_00043 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP013035_00043 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 pCP013035_00044 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP013035_00044 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP013035_00044 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP013035_00044 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP013035_00044 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 pCP013035_00045 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP013035_00045 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP013035_00045 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP013035_00045 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP013035_00045 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pCP013035_00045 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pCP013035_00045 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pCP013035_00045 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP013035_00045 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 pCP013035_00045 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pCP013035_00045 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pCP013035_00045 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pCP013035_00045 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 pCP013035_00045 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pCP013035_00045 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain IF2_N PF04760.15 54 pCP013035_00046 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP013035_00046 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP013035_00046 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP013035_00046 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP013035_00046 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP013035_00046 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP013035_00046 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 pCP013035_00047 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3251 PF11622.8 165 pCP013035_00048 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pCP013035_00048 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pCP013035_00048 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pCP013035_00048 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP013035_00048 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP013035_00048 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pCP013035_00048 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP013035_00048 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP013035_00048 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pCP013035_00048 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pCP013035_00048 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pCP013035_00048 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP013035_00048 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP013035_00048 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) Phage_pRha PF09669.10 88 pCP013035_00049 - 185 6.3e-29 100.4 0.0 1 1 2.7e-32 9.7e-29 99.8 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCP013035_00049 - 185 0.0015 18.6 0.0 1 1 9.1e-07 0.0033 17.5 0.0 23 90 27 94 23 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pCP013035_00049 - 185 0.045 13.3 0.1 1 2 0.066 2.4e+02 1.3 0.0 80 118 33 71 5 80 0.79 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pCP013035_00049 - 185 0.045 13.3 0.1 2 2 0.00012 0.42 10.2 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pCP013035_00049 - 185 0.086 12.9 0.0 1 1 5.8e-05 0.21 11.6 0.0 77 131 80 130 63 134 0.84 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pCP013035_00049 - 185 0.73 9.9 5.7 1 3 0.054 1.9e+02 2.1 0.0 43 53 15 25 4 29 0.81 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP013035_00049 - 185 0.73 9.9 5.7 2 3 0.0022 7.9 6.6 0.8 5 26 30 50 26 61 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP013035_00049 - 185 0.73 9.9 5.7 3 3 0.064 2.3e+02 1.9 0.0 10 42 116 154 108 160 0.67 Sporulation protein Cse60 CagE_TrbE_VirB PF03135.14 206 pCP013035_00050 - 491 2e-06 28.0 0.4 1 2 1.2e-09 5.3e-06 26.7 0.0 162 206 7 51 2 51 0.93 CagE, TrbE, VirB family, component of type IV transporter system CagE_TrbE_VirB PF03135.14 206 pCP013035_00050 - 491 2e-06 28.0 0.4 2 2 2.2 9.9e+03 -3.6 0.1 104 135 370 382 348 395 0.48 CagE, TrbE, VirB family, component of type IV transporter system AAA_10 PF12846.7 362 pCP013035_00050 - 491 7.4e-06 25.1 1.2 1 1 4.5e-09 2e-05 23.7 1.2 23 321 116 415 104 429 0.74 AAA-like domain HNOBA PF07701.14 221 pCP013035_00050 - 491 0.017 14.6 0.1 1 1 6.1e-06 0.028 13.9 0.1 53 153 193 413 191 421 0.86 Heme NO binding associated cEGF PF12662.7 24 pCP013035_00050 - 491 0.2 11.6 0.0 1 1 0.0001 0.47 10.4 0.0 14 24 328 339 324 339 0.82 Complement Clr-like EGF-like CagX PF03524.15 211 pCP013037_00002 - 295 2e-54 184.5 1.5 1 1 3.7e-58 3.3e-54 183.8 1.5 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP013037_00002 - 295 0.072 12.9 0.5 1 2 1.8e-05 0.16 11.8 0.0 1 51 1 51 1 66 0.92 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP013037_00002 - 295 0.072 12.9 0.5 2 2 1.1 9.7e+03 -3.7 0.1 50 62 130 142 124 149 0.68 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 pCP013037_00003 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP013037_00003 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 pCP013037_00004 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP013037_00004 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 pCP013037_00005 - 332 2.8e-30 105.7 31.4 1 2 4.7e-34 2.8e-30 105.7 31.4 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP013037_00005 - 332 2.8e-30 105.7 31.4 2 2 0.24 1.4e+03 -1.2 0.1 61 91 293 329 260 332 0.58 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP013037_00005 - 332 0.16 11.8 1.2 1 2 0.16 9.4e+02 -0.3 0.1 35 67 67 105 60 118 0.65 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP013037_00005 - 332 0.16 11.8 1.2 2 2 0.00011 0.68 9.8 0.1 28 81 238 288 209 301 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP013037_00005 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 pCP013037_00006 - 323 4.7e-28 98.9 14.1 1 1 2.7e-31 6.1e-28 98.6 14.1 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP013037_00006 - 323 0.0059 16.7 0.7 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP013037_00006 - 323 0.0059 16.7 0.7 2 2 9.1e-06 0.02 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP013037_00006 - 323 0.011 16.4 5.4 1 3 0.067 1.5e+02 3.0 0.3 92 135 104 145 41 149 0.59 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP013037_00006 - 323 0.011 16.4 5.4 2 3 0.12 2.6e+02 2.2 0.5 52 135 111 145 93 185 0.58 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP013037_00006 - 323 0.011 16.4 5.4 3 3 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pCP013037_00006 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pCP013037_00006 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pCP013037_00006 - 323 0.069 13.8 0.9 1 2 2.2 4.9e+03 -1.8 0.0 55 72 124 141 101 172 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP013037_00006 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain Allexi_40kDa PF05549.11 271 pCP013037_00006 - 323 0.81 9.1 5.0 1 2 0.21 4.8e+02 0.1 0.1 37 123 47 138 33 177 0.61 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pCP013037_00006 - 323 0.81 9.1 5.0 2 2 0.0002 0.46 10.0 1.6 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein THOC7 PF05615.13 132 pCP013037_00006 - 323 3 8.1 11.6 1 2 0.00072 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pCP013037_00006 - 323 3 8.1 11.6 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 DHR10 PF18595.1 117 pCP013037_00006 - 323 5.7 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pCP013037_00006 - 323 5.7 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain IF2_N PF04760.15 54 pCP013037_00007 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP013037_00007 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP013037_00007 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP013037_00007 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP013037_00007 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP013037_00007 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP013037_00007 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 pCP013037_00008 - 141 7e-25 87.1 0.1 1 1 4.9e-29 8.8e-25 86.8 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3895 PF13034.6 76 pCP013037_00009 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 pCP013037_00009 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) Phage_pRha PF09669.10 88 pCP013037_00010 - 185 6.4e-29 100.4 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCP013037_00010 - 185 0.0014 18.7 0.0 1 1 8.6e-07 0.0031 17.6 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pCP013037_00010 - 185 0.011 15.3 0.4 1 2 0.05 1.8e+02 1.6 0.1 80 118 33 71 5 80 0.74 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pCP013037_00010 - 185 0.011 15.3 0.4 2 2 3.3e-05 0.12 12.0 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pCP013037_00010 - 185 0.061 13.3 0.1 1 1 4.6e-05 0.16 11.9 0.0 77 131 80 130 69 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pCP013037_00010 - 185 1.1 9.4 7.5 1 3 0.019 69 3.6 0.1 40 53 12 25 3 29 0.83 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP013037_00010 - 185 1.1 9.4 7.5 2 3 0.0022 7.9 6.6 0.9 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP013037_00010 - 185 1.1 9.4 7.5 3 3 0.064 2.3e+02 1.9 0.0 10 42 116 154 109 160 0.66 Sporulation protein Cse60 CagE_TrbE_VirB PF03135.14 206 pCP013037_00011 - 922 2.1e-51 174.9 0.9 1 1 1.2e-54 5.2e-51 173.7 0.9 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP013037_00011 - 922 7.2e-21 74.2 1.2 1 1 2.8e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 pCP013037_00011 - 922 3.8e-07 29.3 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 pCP013037_00011 - 922 0.038 14.1 5.4 1 5 0.48 2.2e+03 -1.5 0.1 96 202 139 253 127 279 0.53 Helicase HerA, central domain DUF87 PF01935.17 227 pCP013037_00011 - 922 0.038 14.1 5.4 2 5 0.37 1.7e+03 -1.1 0.1 88 126 264 300 242 417 0.71 Helicase HerA, central domain DUF87 PF01935.17 227 pCP013037_00011 - 922 0.038 14.1 5.4 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 pCP013037_00011 - 922 0.038 14.1 5.4 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 pCP013037_00011 - 922 0.038 14.1 5.4 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain TrbC PF04956.13 99 pCP013037_00012 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP013037_00012 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pCP013037_00014 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP013037_00014 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pCP013037_00014 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase Resolvase PF00239.21 146 pCP013037_00015 - 204 1.6e-33 115.9 0.7 1 1 4.7e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP013037_00015 - 204 0.024 14.4 0.8 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP013037_00015 - 204 0.024 14.4 0.8 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP013037_00015 - 204 0.024 14.4 0.8 3 3 0.01 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP013037_00015 - 204 0.028 14.5 4.9 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP013037_00015 - 204 0.028 14.5 4.9 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP013037_00015 - 204 0.028 14.5 4.9 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCP013037_00015 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP013037_00015 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP013037_00015 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat GBR_NSP5 PF17580.2 176 pCP013037_00017 - 115 0.088 12.6 4.3 1 2 0.17 1.5e+03 -1.1 0.0 135 151 11 27 3 51 0.62 Group B Rotavirus Non-structural protein 5 GBR_NSP5 PF17580.2 176 pCP013037_00017 - 115 0.088 12.6 4.3 2 2 4.2e-06 0.038 13.8 2.0 17 64 52 99 34 106 0.78 Group B Rotavirus Non-structural protein 5 FeoB_associated PF12669.7 44 pCP013037_00017 - 115 0.4 11.1 1.6 1 2 0.00017 1.5 9.3 0.3 2 25 25 48 23 50 0.90 FeoB-associated Cys-rich membrane protein FeoB_associated PF12669.7 44 pCP013037_00017 - 115 0.4 11.1 1.6 2 2 0.12 1.1e+03 0.1 0.1 18 26 89 97 88 101 0.86 FeoB-associated Cys-rich membrane protein AAA_25 PF13481.6 194 pCP013037_00018 - 597 1.8e-15 57.0 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP013037_00018 - 597 0.00087 18.7 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP013037_00018 - 597 0.00087 18.7 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP013037_00018 - 597 0.0012 18.6 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP013037_00018 - 597 0.0012 18.6 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 pCP013037_00018 - 597 0.0035 17.1 0.0 1 1 2.5e-06 0.0073 16.0 0.0 5 122 36 172 32 207 0.72 AAA domain ATPase PF06745.13 231 pCP013037_00018 - 597 0.011 15.1 0.1 1 2 2.1e-05 0.064 12.6 0.0 16 70 30 83 26 214 0.87 KaiC ATPase PF06745.13 231 pCP013037_00018 - 597 0.011 15.1 0.1 2 2 0.51 1.5e+03 -1.7 0.0 137 160 329 352 321 358 0.83 KaiC CbiA PF01656.23 128 pCP013037_00018 - 597 0.18 11.9 0.9 1 1 0.00018 0.53 10.4 1.0 1 29 35 63 35 537 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain HicB_lk_antitox PF15919.5 123 pCP013037_00019 - 72 3.6e-09 36.8 0.0 1 1 4.2e-13 3.8e-09 36.7 0.0 3 60 5 61 3 71 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 pCP013037_00019 - 72 0.065 12.6 0.0 1 1 7.9e-06 0.071 12.5 0.0 12 60 21 69 15 72 0.92 IRSp53/MIM homology domain Pkinase PF00069.25 264 pCP013037_00021 - 390 2.6e-30 105.7 7.7 1 1 1.2e-33 4.2e-30 105.0 7.7 5 202 156 356 153 390 0.81 Protein kinase domain Pkinase_Tyr PF07714.17 259 pCP013037_00021 - 390 1.6e-26 93.2 0.7 1 1 6.2e-30 2.2e-26 92.7 0.7 6 163 157 308 154 380 0.85 Protein tyrosine kinase Pkinase_fungal PF17667.1 408 pCP013037_00021 - 390 4.7e-06 25.6 0.7 1 1 2e-09 7e-06 25.1 0.7 314 364 254 301 240 319 0.77 Fungal protein kinase DUF2841 PF11001.8 124 pCP013037_00021 - 390 0.0036 17.4 0.7 1 2 2.2 7.8e+03 -3.1 0.0 10 56 22 69 17 74 0.59 Protein of unknown function (DUF2841) DUF2841 PF11001.8 124 pCP013037_00021 - 390 0.0036 17.4 0.7 2 2 3.3e-06 0.012 15.7 0.7 15 88 179 263 162 323 0.71 Protein of unknown function (DUF2841) ORC6 PF05460.13 357 pCP013037_00021 - 390 0.011 15.0 0.2 1 1 4.6e-06 0.016 14.5 0.2 192 282 163 254 117 268 0.79 Origin recognition complex subunit 6 (ORC6) TOPRIM_C PF16898.5 128 pCP013037_00022 - 69 0.029 14.7 1.5 1 1 1.7e-06 0.031 14.6 1.5 63 124 8 68 2 69 0.88 C-terminal associated domain of TOPRIM DUF4223 PF13978.6 54 pCP013037_00023 - 87 0.0072 16.3 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pCP013037_00023 - 87 0.0072 16.3 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pCP013037_00023 - 87 0.12 12.4 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 pCP013037_00024 - 409 3.6e-08 33.7 0.0 1 1 1.6e-11 7.3e-08 32.7 0.0 3 93 270 374 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pCP013037_00024 - 409 0.083 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain 5_3_exonuc PF01367.20 97 pCP013037_00024 - 409 0.083 13.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP013037_00024 - 409 0.083 13.5 4.7 2 2 0.0001 0.46 11.1 0.4 15 81 321 383 319 404 0.72 5'-3' exonuclease, C-terminal SAM fold Toprim_4 PF13662.6 89 pCP013037_00024 - 409 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain DUF2400 PF09674.10 227 pCP013037_00025 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pCP013037_00025 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Sds3 PF08598.11 218 pCP013037_00027 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pCP013037_00027 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP013037_00027 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pCP013037_00027 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP013037_00027 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 pCP013037_00028 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP013037_00028 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP013037_00028 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP013037_00028 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP013037_00028 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP013037_00028 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP013037_00028 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pCP013037_00028 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP013037_00028 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 pCP013037_00028 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP013037_00028 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain Relaxase PF03432.14 242 pCP013037_00029 - 462 5.1e-10 39.4 7.2 1 2 2.9e-14 5.1e-10 39.4 7.2 48 228 119 296 70 309 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP013037_00029 - 462 5.1e-10 39.4 7.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_19 PF12844.7 65 pCP013037_00030 - 314 5.9e-05 23.0 0.2 1 2 0.029 44 4.2 0.0 11 31 9 29 2 42 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 pCP013037_00030 - 314 5.9e-05 23.0 0.2 2 2 7e-06 0.01 15.8 0.0 27 64 116 152 91 153 0.90 Helix-turn-helix domain HTH_3 PF01381.22 55 pCP013037_00030 - 314 0.0013 18.8 0.0 1 2 7e-06 0.01 15.8 0.0 2 29 3 30 2 30 0.85 Helix-turn-helix HTH_3 PF01381.22 55 pCP013037_00030 - 314 0.0013 18.8 0.0 2 2 0.57 8.6e+02 0.1 0.0 26 55 118 147 107 147 0.85 Helix-turn-helix Phage_CI_repr PF07022.13 65 pCP013037_00030 - 314 0.0024 17.9 0.0 1 2 0.00012 0.18 11.9 0.1 14 49 12 47 8 50 0.82 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP013037_00030 - 314 0.0024 17.9 0.0 2 2 0.055 82 3.4 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 pCP013037_00030 - 314 0.0046 16.5 0.0 1 2 4.2e-05 0.062 12.9 0.1 17 34 10 27 9 27 0.94 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP013037_00030 - 314 0.0046 16.5 0.0 2 2 0.25 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding Imm3 PF14425.6 119 pCP013037_00030 - 314 0.028 14.5 0.2 1 1 3.8e-05 0.057 13.5 0.2 26 113 18 104 1 109 0.73 Immunity protein Imm3 YdaS_antitoxin PF15943.5 65 pCP013037_00030 - 314 0.028 14.3 0.1 1 2 7.5e-05 0.11 12.3 0.0 10 36 12 37 2 49 0.79 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 pCP013037_00030 - 314 0.028 14.3 0.1 2 2 2.1 3.2e+03 -1.9 0.1 38 47 290 299 289 300 0.87 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_AsnC-type PF13404.6 42 pCP013037_00030 - 314 0.041 13.7 0.1 1 2 7.3e-05 0.11 12.3 0.0 17 34 10 27 9 29 0.94 AsnC-type helix-turn-helix domain HTH_AsnC-type PF13404.6 42 pCP013037_00030 - 314 0.041 13.7 0.1 2 2 5.4 8e+03 -3.2 0.0 27 36 99 108 98 110 0.81 AsnC-type helix-turn-helix domain Crp PF00325.20 32 pCP013037_00030 - 314 0.053 13.2 0.0 1 1 6.4e-05 0.095 12.4 0.0 1 15 9 23 9 27 0.89 Bacterial regulatory proteins, crp family HTH_28 PF13518.6 52 pCP013037_00030 - 314 0.054 13.6 0.0 1 1 8.9e-05 0.13 12.4 0.0 13 32 11 30 9 32 0.94 Helix-turn-helix domain HTH_23 PF13384.6 50 pCP013037_00030 - 314 0.072 12.9 0.0 1 1 0.00011 0.17 11.7 0.0 17 37 10 30 1 36 0.86 Homeodomain-like domain HTH_Mga PF08280.11 60 pCP013037_00030 - 314 0.097 12.7 2.9 1 3 0.0012 1.8 8.7 0.2 20 37 10 27 6 30 0.88 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP013037_00030 - 314 0.097 12.7 2.9 2 3 0.056 83 3.3 0.0 25 59 41 75 32 76 0.80 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP013037_00030 - 314 0.097 12.7 2.9 3 3 7.7 1.2e+04 -3.5 0.0 46 50 94 98 86 105 0.47 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.6 52 pCP013037_00030 - 314 0.21 11.0 0.1 1 1 0.00026 0.39 10.2 0.1 26 47 10 30 5 33 0.89 Helix-turn-helix domain of transposase family ISL3 SNF2_N PF00176.23 350 pCP013037_00031 - 1932 1.4e-16 60.1 0.8 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP013037_00031 - 1932 1.4e-16 60.1 0.8 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP013037_00031 - 1932 1.4e-16 60.1 0.8 3 3 1.1 3.9e+03 -3.8 0.0 172 199 1879 1907 1860 1915 0.75 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP013037_00031 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP013037_00031 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP013037_00031 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.3 36 121 1801 1904 1749 1929 0.62 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP013037_00031 - 1932 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP013037_00031 - 1932 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP013037_00031 - 1932 1.3e-05 25.1 2.0 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP013037_00031 - 1932 1.3e-05 25.1 2.0 2 2 0.15 5.4e+02 0.2 0.1 120 143 1884 1909 1831 1929 0.67 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP013037_00031 - 1932 3e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP013037_00031 - 1932 3e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 pCP013037_00032 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 pCP013037_00033 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP013037_00033 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP013037_00033 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP013037_00033 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP013037_00033 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP013037_00033 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pCP013037_00034 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP013037_00034 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 pCP013037_00035 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP013037_00035 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP013037_00035 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP013037_00035 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP013037_00035 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP013037_00035 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 pCP013037_00036 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP013037_00036 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP013037_00036 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 pCP013037_00036 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 pCP013037_00036 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 pCP013037_00036 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 pCP013037_00036 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 pCP013037_00036 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP013037_00036 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP013037_00036 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP013037_00036 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 pCP013037_00036 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase GTP_EFTU PF00009.27 194 pCP013037_00037 - 639 8.1e-59 198.4 0.4 1 1 5.7e-62 1.1e-58 198.0 0.4 2 191 2 237 1 240 0.93 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP013037_00037 - 639 1.3e-22 79.9 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP013037_00037 - 639 1.3e-22 79.9 0.0 2 2 1.7e-25 3.5e-22 78.5 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP013037_00037 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP013037_00037 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP013037_00037 - 639 1.8e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP013037_00037 - 639 0.00029 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP013037_00037 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP013037_00037 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP013037_00037 - 639 0.047 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 pCP013037_00039 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP013037_00039 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain Topoisom_bac PF01131.20 413 pCP013037_00040 - 648 1.2e-97 327.5 8.2 1 1 5.5e-101 1.6e-97 327.1 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP013037_00040 - 648 3.6e-12 46.4 2.9 1 2 1.8e-15 5.3e-12 45.9 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP013037_00040 - 648 3.6e-12 46.4 2.9 2 2 1.3 3.9e+03 -1.9 0.6 71 77 514 520 476 564 0.60 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP013037_00040 - 648 0.011 15.5 1.7 1 1 9.4e-06 0.028 14.2 1.7 2 21 628 648 627 648 0.94 Topoisomerase DNA binding C4 zinc finger EF-hand_8 PF13833.6 55 pCP013037_00040 - 648 0.077 12.9 0.0 1 1 8.8e-05 0.26 11.1 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zinc_ribbon_9 PF14369.6 35 pCP013037_00040 - 648 0.22 11.8 0.7 1 2 2.7 8.2e+03 -2.8 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP013037_00040 - 648 0.22 11.8 0.7 2 2 0.00012 0.36 11.1 0.0 18 32 624 638 614 640 0.76 zinc-ribbon HTH_34 PF13601.6 80 pCP013037_00040 - 648 0.22 11.7 2.8 1 3 0.56 1.7e+03 -0.7 0.0 26 47 362 383 351 388 0.81 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP013037_00040 - 648 0.22 11.7 2.8 2 3 1.5 4.6e+03 -2.1 0.1 46 63 472 489 469 493 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP013037_00040 - 648 0.22 11.7 2.8 3 3 0.00025 0.74 10.0 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain Redoxin PF08534.10 147 pCP013037_00041 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP013037_00041 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 pCP013037_00043 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCP013037_00043 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP013037_00043 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP013037_00043 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP013037_00043 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP013037_00043 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 pCP013037_00044 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 pCP013037_00045 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pCP013037_00045 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pCP013037_00045 - 145 0.08 12.7 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP013037_00045 - 145 3.9 7.4 5.6 1 2 0.00081 3.6 7.5 2.3 36 49 29 42 2 47 0.91 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP013037_00045 - 145 3.9 7.4 5.6 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 pCP013037_00046 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP013037_00046 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP013037_00046 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP013037_00046 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP013037_00046 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 pCP013037_00047 - 330 4.6e-54 183.3 0.0 1 1 9.5e-57 5.3e-54 183.1 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP013037_00047 - 330 6.1e-05 23.6 0.0 1 1 2.2e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP013037_00047 - 330 0.00016 21.2 0.0 1 1 4.4e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP013037_00047 - 330 0.00022 20.8 0.0 1 1 6.7e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP013037_00047 - 330 0.0014 18.9 0.0 1 1 4.5e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP013037_00047 - 330 0.0027 17.5 0.0 1 1 9.3e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP013037_00047 - 330 0.0031 17.3 0.0 1 1 8.3e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP013037_00047 - 330 0.0037 17.3 0.0 1 1 1.3e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP013037_00047 - 330 0.0048 15.9 0.0 1 1 1.3e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP013037_00047 - 330 0.0072 16.3 0.0 1 1 2.2e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP013037_00047 - 330 0.0087 15.4 0.0 1 1 2.5e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP013037_00047 - 330 0.0087 16.0 0.0 1 1 2.1e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP013037_00047 - 330 0.018 14.8 0.0 1 1 6.4e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP013037_00047 - 330 0.021 14.8 0.0 1 1 7.4e-05 0.041 13.9 0.0 10 50 147 186 132 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP013037_00047 - 330 0.021 13.7 0.0 1 1 5.9e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP013037_00047 - 330 0.023 14.8 0.1 1 1 8.1e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP013037_00047 - 330 0.024 14.4 0.0 1 1 9.4e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP013037_00047 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP013037_00047 - 330 0.035 13.5 0.0 1 1 9.9e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein ATP_bind_1 PF03029.17 241 pCP013037_00047 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 pCP013037_00047 - 330 0.038 14.4 0.0 1 1 0.00019 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 pCP013037_00047 - 330 0.04 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP013037_00047 - 330 0.052 13.3 0.0 1 1 0.00019 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP013037_00047 - 330 0.062 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP013037_00047 - 330 0.064 13.6 0.0 1 1 0.00018 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain MobB PF03205.14 133 pCP013037_00047 - 330 0.085 12.8 0.0 1 1 0.00035 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pCP013037_00047 - 330 0.092 12.7 0.4 1 1 0.00043 0.24 11.3 0.2 71 102 149 179 131 199 0.78 Microtubule binding NTPase_1 PF03266.15 168 pCP013037_00047 - 330 0.12 12.3 0.1 1 1 0.0004 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP013037_00047 - 330 0.15 11.7 0.0 1 1 0.00041 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 130 pCP013037_00047 - 330 0.15 12.6 0.1 1 1 0.00067 0.38 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain AAA_30 PF13604.6 192 pCP013037_00047 - 330 0.2 11.4 0.0 1 1 0.00055 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP013037_00047 - 330 0.22 12.0 2.5 1 1 0.00057 0.32 11.5 1.3 22 37 163 178 152 184 0.88 AAA domain TrbI PF03743.14 187 pCP013037_00048 - 85 1.1e-10 41.6 0.1 1 1 1.4e-14 1.3e-10 41.5 0.1 131 187 19 69 2 69 0.80 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP013037_00048 - 85 0.0018 17.4 0.1 1 1 2.2e-07 0.002 17.3 0.1 31 81 16 66 5 72 0.89 HaeIII restriction endonuclease Adenyl_transf PF04439.12 279 pCP013117_00001 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 pCP013117_00002 - 180 3.8e-20 72.3 0.1 1 1 2.3e-23 5.3e-20 71.8 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 pCP013117_00002 - 180 1.2e-13 51.2 0.1 1 1 9.1e-17 2e-13 50.5 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 pCP013117_00002 - 180 2.7e-12 46.7 0.0 1 1 1.6e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 pCP013117_00002 - 180 1.1e-09 38.6 1.1 1 1 6e-13 1.3e-09 38.3 1.1 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 pCP013117_00002 - 180 0.0011 19.7 0.0 1 1 6.1e-07 0.0014 19.4 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 pCP013117_00002 - 180 0.0011 19.0 0.0 1 1 1.2e-06 0.0027 17.8 0.0 6 58 79 130 73 132 0.85 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 pCP013117_00002 - 180 0.015 15.4 0.0 1 1 2.6e-05 0.059 13.5 0.0 21 126 50 154 43 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 pCP013117_00002 - 180 0.038 14.0 0.0 1 1 2.9e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein APH PF01636.23 240 pCP013117_00003 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pCP013117_00003 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pCP013117_00003 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pCP013117_00003 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family W2 PF02020.18 79 pCP013117_00004 - 266 0.02 15.0 0.1 1 2 0.23 4.1e+03 -2.0 0.0 43 65 155 177 150 179 0.61 eIF4-gamma/eIF5/eIF2-epsilon W2 PF02020.18 79 pCP013117_00004 - 266 0.02 15.0 0.1 2 2 3.4e-06 0.061 13.5 0.0 38 77 180 240 176 242 0.86 eIF4-gamma/eIF5/eIF2-epsilon Lip_prot_lig_C PF10437.9 85 pCP013117_00005 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCP013117_00005 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pCP013117_00005 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP013117_00005 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain LysE PF01810.18 193 pCP013117_00006 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP013117_00006 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP013117_00006 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 pCP013117_00006 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 pCP013117_00006 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 pCP013117_00006 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 pCP013117_00006 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 pCP013117_00006 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP013117_00006 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP013117_00006 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP013117_00006 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 pCP013117_00006 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 pCP013117_00007 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP013117_00007 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP013117_00007 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP013117_00007 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP013117_00007 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP013117_00007 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pCP013117_00008 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP013117_00008 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pCP013117_00009 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP013117_00009 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP013117_00009 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP013117_00009 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP013117_00009 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP013117_00009 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pCP013117_00010 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pCP013117_00011 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP013117_00011 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP013117_00011 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP013117_00011 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP013117_00011 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP013117_00011 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP013117_00011 - 1932 9.9e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP013117_00011 - 1932 9.9e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP013117_00011 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP013117_00011 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP013117_00011 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP013117_00011 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 pCP013117_00012 - 211 0.0008 19.8 0.0 1 1 2.1e-07 0.0019 18.6 0.0 29 75 56 120 8 121 0.67 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pCP013117_00012 - 211 0.032 14.5 0.1 1 1 7.4e-06 0.066 13.4 0.1 59 92 43 86 16 119 0.74 Acetyltransferase (GNAT) family Peptidase_S24 PF00717.23 70 pCP013117_00013 - 222 3.3e-12 46.2 0.0 1 1 2.2e-15 6.4e-12 45.2 0.0 3 68 142 205 140 211 0.94 Peptidase S24-like Phage_CI_repr PF07022.13 65 pCP013117_00013 - 222 0.027 14.5 0.0 1 1 2e-05 0.06 13.4 0.0 15 60 37 82 18 87 0.87 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 pCP013117_00013 - 222 0.048 13.3 0.0 1 2 0.00011 0.33 10.7 0.0 26 49 34 57 33 57 0.90 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 54 pCP013117_00013 - 222 0.048 13.3 0.0 2 2 0.35 1e+03 -0.6 0.0 7 19 191 203 190 205 0.89 Sigma-70, region 4 HTH_10 PF04967.12 53 pCP013117_00013 - 222 0.056 13.3 0.0 1 1 3.2e-05 0.097 12.5 0.0 21 41 32 52 30 54 0.90 HTH DNA binding domain Fe_dep_repress PF01325.19 60 pCP013117_00013 - 222 0.16 12.2 0.0 1 1 9e-05 0.27 11.5 0.0 16 39 28 51 12 54 0.74 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 50 pCP013117_00013 - 222 0.18 11.6 0.0 1 2 0.00024 0.73 9.7 0.0 17 34 34 51 16 54 0.78 Homeodomain-like domain HTH_23 PF13384.6 50 pCP013117_00013 - 222 0.18 11.6 0.0 2 2 0.64 1.9e+03 -1.2 0.0 6 16 93 103 92 109 0.73 Homeodomain-like domain RepB-RCR_reg PF10723.9 81 pCP013117_00014 - 134 0.057 13.4 1.2 1 1 1.4e-05 0.13 12.3 1.2 22 59 12 49 7 63 0.90 Replication regulatory protein RepB PdaC PF13739.6 95 pCP013117_00014 - 134 2.4 9.2 5.8 1 1 0.0011 9.8 7.2 5.8 9 62 24 78 15 129 0.79 Deacetylase PdaC CdhC PF03598.15 155 pCP013117_00015 - 64 0.052 13.4 0.0 1 1 5.8e-06 0.052 13.4 0.0 107 145 20 58 5 64 0.89 CO dehydrogenase/acetyl-CoA synthase complex beta subunit SinI PF08671.10 28 pCP013117_00015 - 64 0.076 12.8 0.1 1 3 8.5e-06 0.076 12.8 0.1 13 25 29 41 25 41 0.95 Anti-repressor SinI SinI PF08671.10 28 pCP013117_00015 - 64 0.076 12.8 0.1 2 3 0.14 1.3e+03 -0.7 0.1 10 15 43 48 43 48 0.84 Anti-repressor SinI SinI PF08671.10 28 pCP013117_00015 - 64 0.076 12.8 0.1 3 3 0.5 4.5e+03 -2.4 0.0 3 7 58 62 58 62 0.79 Anti-repressor SinI Ank_2 PF12796.7 83 pCP013117_00016 - 95 2.1e-05 25.0 0.1 1 1 5.3e-09 3.2e-05 24.4 0.1 22 77 8 68 2 74 0.77 Ankyrin repeats (3 copies) Ank_3 PF13606.6 31 pCP013117_00016 - 95 0.011 16.2 0.1 1 2 0.13 7.9e+02 1.3 0.0 10 23 21 33 14 39 0.57 Ankyrin repeat Ank_3 PF13606.6 31 pCP013117_00016 - 95 0.011 16.2 0.1 2 2 3e-05 0.18 12.5 0.0 2 29 44 70 43 72 0.88 Ankyrin repeat DUF3447 PF11929.8 76 pCP013117_00016 - 95 0.012 15.6 3.0 1 1 2.1e-06 0.013 15.5 1.4 30 75 10 62 1 63 0.69 Domain of unknown function (DUF3447) MethyltransfD12 PF02086.15 260 pCP013117_00017 - 271 1.5e-28 100.2 6.6 1 1 1.7e-32 3e-28 99.2 6.6 1 259 28 252 28 253 0.88 D12 class N6 adenine-specific DNA methyltransferase Phage_GPD PF05954.11 304 pCP013117_00018 - 322 3.2e-06 26.7 0.0 1 1 4.1e-10 3.7e-06 26.5 0.0 78 165 102 183 96 309 0.80 Phage late control gene D protein (GPD) PTH2 PF01981.16 117 pCP013117_00018 - 322 0.031 14.6 0.1 1 1 7e-06 0.062 13.6 0.1 33 82 100 144 69 151 0.78 Peptidyl-tRNA hydrolase PTH2 Phage_tail_X PF05489.12 60 pCP013117_00019 - 63 2.5e-10 39.9 0.0 1 1 1.7e-14 3.1e-10 39.6 0.0 5 58 7 56 3 58 0.87 Phage Tail Protein X Phage_P2_GpU PF06995.11 120 pCP013117_00020 - 137 1.2e-18 66.9 0.0 1 1 8.2e-23 1.5e-18 66.6 0.0 4 117 20 133 19 136 0.97 Phage P2 GpU PhageMin_Tail PF10145.9 198 pCP013117_00021 - 654 1.5e-22 80.4 18.9 1 4 0.1 1.2e+02 2.5 1.0 120 163 26 68 6 99 0.56 Phage-related minor tail protein PhageMin_Tail PF10145.9 198 pCP013117_00021 - 654 1.5e-22 80.4 18.9 2 4 1.4e-25 1.5e-22 80.4 18.9 3 198 116 318 114 318 0.92 Phage-related minor tail protein PhageMin_Tail PF10145.9 198 pCP013117_00021 - 654 1.5e-22 80.4 18.9 3 4 0.0065 7.3 6.4 3.4 33 108 307 380 305 386 0.84 Phage-related minor tail protein PhageMin_Tail PF10145.9 198 pCP013117_00021 - 654 1.5e-22 80.4 18.9 4 4 0.53 6e+02 0.1 1.0 86 107 358 379 353 461 0.65 Phage-related minor tail protein DUF3450 PF11932.8 241 pCP013117_00021 - 654 4.6e-06 26.1 0.6 1 3 0.00013 0.15 11.3 0.0 52 139 19 107 15 113 0.83 Protein of unknown function (DUF3450) DUF3450 PF11932.8 241 pCP013117_00021 - 654 4.6e-06 26.1 0.6 2 3 0.014 15 4.8 0.1 13 72 230 291 221 306 0.84 Protein of unknown function (DUF3450) DUF3450 PF11932.8 241 pCP013117_00021 - 654 4.6e-06 26.1 0.6 3 3 0.0056 6.2 6.0 0.0 40 113 326 398 322 401 0.82 Protein of unknown function (DUF3450) DLP_helical PF18709.1 339 pCP013117_00021 - 654 0.017 14.3 0.4 1 3 0.32 3.6e+02 0.1 1.4 80 209 24 56 17 154 0.69 Dynamin-like helical domain DLP_helical PF18709.1 339 pCP013117_00021 - 654 0.017 14.3 0.4 2 3 0.33 3.7e+02 0.1 1.9 165 233 156 225 86 228 0.78 Dynamin-like helical domain DLP_helical PF18709.1 339 pCP013117_00021 - 654 0.017 14.3 0.4 3 3 1.5e-05 0.017 14.3 0.4 77 201 245 370 238 399 0.80 Dynamin-like helical domain Dor1 PF04124.12 338 pCP013117_00021 - 654 0.037 12.7 1.4 1 2 5.6e-05 0.063 12.0 0.6 33 89 12 109 10 182 0.73 Dor1-like family Dor1 PF04124.12 338 pCP013117_00021 - 654 0.037 12.7 1.4 2 2 3.2 3.6e+03 -3.7 0.0 46 77 256 287 249 297 0.74 Dor1-like family HD_2 PF12917.7 182 pCP013117_00021 - 654 0.06 13.1 2.9 1 2 0.86 9.6e+02 -0.6 0.4 119 159 32 72 17 78 0.67 HD containing hydrolase-like enzyme HD_2 PF12917.7 182 pCP013117_00021 - 654 0.06 13.1 2.9 2 2 6.7e-05 0.076 12.8 0.1 89 167 286 369 264 379 0.73 HD containing hydrolase-like enzyme HAUS-augmin3 PF14932.6 260 pCP013117_00021 - 654 0.064 12.8 8.5 1 3 0.023 25 4.3 0.1 52 97 13 58 10 74 0.85 HAUS augmin-like complex subunit 3 HAUS-augmin3 PF14932.6 260 pCP013117_00021 - 654 0.064 12.8 8.5 2 3 0.00047 0.53 9.8 2.4 127 239 252 371 232 382 0.81 HAUS augmin-like complex subunit 3 HAUS-augmin3 PF14932.6 260 pCP013117_00021 - 654 0.064 12.8 8.5 3 3 2 2.2e+03 -2.1 0.0 203 245 549 596 527 609 0.52 HAUS augmin-like complex subunit 3 DUF16 PF01519.16 104 pCP013117_00021 - 654 0.086 13.3 3.1 1 3 0.00095 1.1 9.8 1.4 23 77 15 71 12 120 0.75 Protein of unknown function DUF16 DUF16 PF01519.16 104 pCP013117_00021 - 654 0.086 13.3 3.1 2 3 2 2.3e+03 -0.9 0.0 35 73 95 133 89 151 0.67 Protein of unknown function DUF16 DUF16 PF01519.16 104 pCP013117_00021 - 654 0.086 13.3 3.1 3 3 0.72 8e+02 0.6 0.0 50 85 325 361 278 398 0.58 Protein of unknown function DUF16 DUF3847 PF12958.7 81 pCP013117_00021 - 654 0.11 12.6 4.4 1 4 1.7 1.9e+03 -1.0 0.1 4 32 29 57 26 62 0.78 Protein of unknown function (DUF3847) DUF3847 PF12958.7 81 pCP013117_00021 - 654 0.11 12.6 4.4 2 4 0.0013 1.4 9.1 0.0 46 73 291 318 289 329 0.91 Protein of unknown function (DUF3847) DUF3847 PF12958.7 81 pCP013117_00021 - 654 0.11 12.6 4.4 3 4 4.7 5.3e+03 -2.4 0.0 6 33 329 357 325 363 0.67 Protein of unknown function (DUF3847) DUF3847 PF12958.7 81 pCP013117_00021 - 654 0.11 12.6 4.4 4 4 0.15 1.7e+02 2.4 0.0 30 48 562 581 552 595 0.80 Protein of unknown function (DUF3847) APC1_C PF18122.1 167 pCP013117_00021 - 654 0.12 12.3 0.1 1 1 0.00023 0.26 11.2 0.1 36 142 232 346 224 373 0.88 Anaphase-promoting complex sub unit 1 C-terminal domain BLOC1_2 PF10046.9 96 pCP013117_00021 - 654 0.15 12.4 15.0 1 7 0.00013 0.15 12.4 0.3 36 79 17 60 12 75 0.84 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP013117_00021 - 654 0.15 12.4 15.0 2 7 0.63 7.1e+02 0.6 0.1 38 76 95 133 88 141 0.52 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP013117_00021 - 654 0.15 12.4 15.0 3 7 5.4 6e+03 -2.4 0.1 28 52 165 190 155 205 0.48 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP013117_00021 - 654 0.15 12.4 15.0 4 7 0.081 90 3.5 0.1 32 67 247 282 239 304 0.86 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP013117_00021 - 654 0.15 12.4 15.0 5 7 1.2 1.3e+03 -0.2 0.0 50 65 347 355 321 402 0.57 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP013117_00021 - 654 0.15 12.4 15.0 6 7 0.94 1.1e+03 0.0 0.0 56 76 526 546 521 548 0.84 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP013117_00021 - 654 0.15 12.4 15.0 7 7 6.9 7.8e+03 -2.7 0.1 23 37 635 649 625 650 0.79 Biogenesis of lysosome-related organelles complex-1 subunit 2 Baculo_PEP_C PF04513.12 140 pCP013117_00021 - 654 0.61 10.1 19.4 1 4 0.48 5.3e+02 0.6 0.1 55 80 28 52 18 74 0.43 Baculovirus polyhedron envelope protein, PEP, C terminus Baculo_PEP_C PF04513.12 140 pCP013117_00021 - 654 0.61 10.1 19.4 2 4 0.054 60 3.7 1.8 30 80 86 132 79 140 0.77 Baculovirus polyhedron envelope protein, PEP, C terminus Baculo_PEP_C PF04513.12 140 pCP013117_00021 - 654 0.61 10.1 19.4 3 4 0.027 31 4.6 0.2 30 89 255 315 246 319 0.89 Baculovirus polyhedron envelope protein, PEP, C terminus Baculo_PEP_C PF04513.12 140 pCP013117_00021 - 654 0.61 10.1 19.4 4 4 0.00067 0.75 9.8 1.3 45 117 345 417 308 445 0.61 Baculovirus polyhedron envelope protein, PEP, C terminus Fib_alpha PF08702.10 143 pCP013117_00021 - 654 0.87 9.8 4.6 1 3 0.0099 11 6.2 1.0 32 118 36 124 18 134 0.74 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP013117_00021 - 654 0.87 9.8 4.6 2 3 0.18 2e+02 2.1 0.1 100 125 170 195 154 205 0.83 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP013117_00021 - 654 0.87 9.8 4.6 3 3 1.6 1.8e+03 -1.0 0.0 51 51 346 346 309 417 0.55 Fibrinogen alpha/beta chain family Spc7 PF08317.11 310 pCP013117_00021 - 654 1.2 7.9 6.5 1 3 0.006 6.7 5.5 1.3 198 245 24 71 15 82 0.49 Spc7 kinetochore protein Spc7 PF08317.11 310 pCP013117_00021 - 654 1.2 7.9 6.5 2 3 0.039 44 2.8 3.2 148 237 41 146 34 191 0.60 Spc7 kinetochore protein Spc7 PF08317.11 310 pCP013117_00021 - 654 1.2 7.9 6.5 3 3 0.06 67 2.2 0.0 250 296 329 375 321 386 0.84 Spc7 kinetochore protein DUF4795 PF16043.5 204 pCP013117_00021 - 654 1.3 8.5 10.7 1 3 0.00044 0.49 10.0 1.7 22 63 19 60 14 69 0.89 Domain of unknown function (DUF4795) DUF4795 PF16043.5 204 pCP013117_00021 - 654 1.3 8.5 10.7 2 3 1.3 1.4e+03 -1.3 0.0 111 146 92 132 70 145 0.58 Domain of unknown function (DUF4795) DUF4795 PF16043.5 204 pCP013117_00021 - 654 1.3 8.5 10.7 3 3 0.12 1.3e+02 2.0 0.5 84 119 308 343 252 389 0.50 Domain of unknown function (DUF4795) Sigma70_ner PF04546.13 204 pCP013117_00021 - 654 2.2 8.1 7.5 1 4 0.025 29 4.5 1.8 70 116 23 69 18 75 0.92 Sigma-70, non-essential region Sigma70_ner PF04546.13 204 pCP013117_00021 - 654 2.2 8.1 7.5 2 4 2.3 2.6e+03 -1.9 0.0 66 94 141 169 127 203 0.76 Sigma-70, non-essential region Sigma70_ner PF04546.13 204 pCP013117_00021 - 654 2.2 8.1 7.5 3 4 0.027 30 4.4 0.0 61 148 331 420 321 423 0.90 Sigma-70, non-essential region Sigma70_ner PF04546.13 204 pCP013117_00021 - 654 2.2 8.1 7.5 4 4 1.7 1.9e+03 -1.5 0.1 70 94 555 579 523 597 0.51 Sigma-70, non-essential region APG6_N PF17675.1 133 pCP013117_00021 - 654 4.9 7.7 5.9 1 3 0.033 38 4.8 0.5 25 80 24 58 15 79 0.41 Apg6 coiled-coil region APG6_N PF17675.1 133 pCP013117_00021 - 654 4.9 7.7 5.9 2 3 5.4 6e+03 -2.3 0.1 76 76 137 137 89 190 0.53 Apg6 coiled-coil region APG6_N PF17675.1 133 pCP013117_00021 - 654 4.9 7.7 5.9 3 3 0.047 52 4.4 0.0 19 72 326 370 322 383 0.80 Apg6 coiled-coil region MgtE PF01769.16 124 pCP013117_00022 - 76 0.065 13.6 4.9 1 1 1.2e-05 0.072 13.5 4.9 29 97 5 72 1 75 0.63 Divalent cation transporter DUF4234 PF14018.6 70 pCP013117_00022 - 76 0.5 10.5 6.7 1 1 0.00019 1.1 9.4 6.7 10 65 24 74 16 76 0.87 Domain of unknown function (DUF4234) DUF2207 PF09972.9 492 pCP013117_00022 - 76 5.5 5.6 8.9 1 1 0.001 6 5.5 8.9 369 430 11 72 1 75 0.59 Predicted membrane protein (DUF2207) Phage_TAC_7 PF10109.9 83 pCP013117_00023 - 78 5.2e-05 23.3 0.0 1 1 3.5e-09 6.2e-05 23.0 0.0 16 79 11 68 8 71 0.86 Phage tail assembly chaperone proteins, E, or 41 or 14 Phage_tube PF04985.14 166 pCP013117_00024 - 171 1e-29 103.4 0.0 1 1 6.3e-34 1.1e-29 103.2 0.0 1 165 6 169 6 170 0.96 Phage tail tube protein FII Phage_sheath_1C PF17482.2 104 pCP013117_00025 - 396 0.0025 17.7 0.3 1 2 0.046 8.2e+02 0.0 0.0 74 101 23 60 6 63 0.77 Phage tail sheath C-terminal domain Phage_sheath_1C PF17482.2 104 pCP013117_00025 - 396 0.0025 17.7 0.3 2 2 1.7e-06 0.031 14.3 0.2 4 88 285 366 282 379 0.73 Phage tail sheath C-terminal domain DUF1353 PF07087.11 91 pCP013117_00027 - 123 5.8e-19 67.6 0.0 1 1 3.8e-23 6.9e-19 67.4 0.0 1 89 19 108 19 110 0.90 Protein of unknown function (DUF1353) DUF4376 PF14301.6 102 pCP013117_00028 - 168 1.3e-10 41.6 0.0 1 1 2e-14 1.7e-10 41.1 0.0 2 100 60 159 59 161 0.96 Domain of unknown function (DUF4376) CENP-X PF09415.10 75 pCP013117_00028 - 168 0.022 15.0 0.1 1 1 5.8e-06 0.052 13.9 0.1 13 58 114 158 108 167 0.80 CENP-S associating Centromere protein X DUF3751 PF12571.8 150 pCP013117_00029 - 359 8e-38 129.9 0.0 1 1 2.9e-41 1.7e-37 128.8 0.0 3 150 4 148 1 148 0.97 Phage tail-collar fibre protein BppL_N PF18338.1 25 pCP013117_00029 - 359 0.0018 18.0 0.4 1 1 7e-07 0.0042 16.8 0.4 6 21 196 211 195 215 0.94 Lower baseplate protein N-terminal domain Peptidase_M28 PF04389.17 198 pCP013117_00029 - 359 0.062 13.0 0.0 1 1 1.6e-05 0.097 12.4 0.0 9 149 65 209 57 231 0.73 Peptidase family M28 Tail_P2_I PF09684.10 136 pCP013117_00030 - 206 2.5e-23 82.5 0.0 1 1 6.1e-27 3.6e-23 82.0 0.0 10 136 14 139 6 139 0.86 Phage tail protein (Tail_P2_I) Acp26Ab PF05777.12 90 pCP013117_00030 - 206 0.08 13.6 0.0 1 1 2.2e-05 0.13 12.9 0.0 26 82 112 169 89 176 0.81 Drosophila accessory gland-specific peptide 26Ab (Acp26Ab) SIN1_PH PF16979.5 110 pCP013117_00030 - 206 0.11 12.8 0.0 1 1 3.7e-05 0.22 11.8 0.0 22 67 160 199 145 206 0.78 SAPK-interacting protein 1 (Sin1), Pleckstrin-homology Baseplate_J PF04865.14 255 pCP013117_00031 - 388 5.1e-24 84.8 0.0 1 1 5.1e-28 9.1e-24 84.0 0.0 3 234 91 313 89 320 0.83 Baseplate J-like protein GPW_gp25 PF04965.14 95 pCP013117_00032 - 96 1.3e-13 50.6 0.0 1 1 8.4e-18 1.5e-13 50.3 0.0 6 85 6 81 2 92 0.90 Gene 25-like lysozyme Phage_base_V PF04717.12 112 pCP013117_00033 - 210 1.1e-18 67.2 0.0 1 1 2e-22 1.8e-18 66.5 0.0 13 112 4 102 1 102 0.92 Type VI secretion system, phage-baseplate injector WTF PF03303.13 239 pCP013117_00033 - 210 0.14 11.9 0.5 1 1 2.1e-05 0.19 11.4 0.5 19 76 80 134 62 146 0.62 WTF protein DUF1804 PF08822.11 164 pCP013117_00034 - 154 1e-09 38.6 0.2 1 1 2e-13 1.2e-09 38.4 0.2 7 142 3 134 1 143 0.92 Protein of unknown function (DUF1804) HTH_29 PF13551.6 63 pCP013117_00034 - 154 0.0057 16.6 0.0 1 2 1.3e-05 0.079 13.0 0.0 10 34 13 36 10 55 0.91 Winged helix-turn helix HTH_29 PF13551.6 63 pCP013117_00034 - 154 0.0057 16.6 0.0 2 2 0.058 3.5e+02 1.3 0.0 19 38 114 133 104 138 0.85 Winged helix-turn helix HTH_7 PF02796.15 45 pCP013117_00034 - 154 0.0077 16.3 0.0 1 1 2.9e-06 0.018 15.1 0.0 12 39 5 32 1 38 0.85 Helix-turn-helix domain of resolvase Mu-like_Pro PF10123.9 325 pCP013117_00035 - 346 1.7e-25 90.2 1.1 1 1 4.3e-28 2.3e-25 89.8 1.1 1 319 17 343 17 346 0.67 Mu-like prophage I protein DUF812 PF05667.11 595 pCP013117_00035 - 346 0.00088 18.3 14.1 1 1 2.2e-06 0.0012 17.8 14.1 271 403 130 272 103 292 0.70 Protein of unknown function (DUF812) Spc7 PF08317.11 310 pCP013117_00035 - 346 0.0032 16.4 15.8 1 1 9.5e-06 0.0052 15.7 15.8 184 278 183 278 175 336 0.75 Spc7 kinetochore protein HALZ PF02183.18 43 pCP013117_00035 - 346 0.0036 17.5 3.9 1 2 7.6 4.2e+03 -1.9 1.9 33 40 198 205 183 209 0.57 Homeobox associated leucine zipper HALZ PF02183.18 43 pCP013117_00035 - 346 0.0036 17.5 3.9 2 2 6.5e-06 0.0036 17.5 3.9 19 42 233 256 232 257 0.92 Homeobox associated leucine zipper Tropomyosin_1 PF12718.7 143 pCP013117_00035 - 346 0.0063 16.7 26.1 1 1 1.2e-05 0.0063 16.7 26.1 14 109 174 269 168 297 0.94 Tropomyosin like Alpha-2-MRAP_C PF06401.11 212 pCP013117_00035 - 346 0.026 14.5 13.1 1 2 2.5e-05 0.014 15.4 10.4 47 170 129 269 121 284 0.74 Alpha-2-macroglobulin RAP, C-terminal domain Alpha-2-MRAP_C PF06401.11 212 pCP013117_00035 - 346 0.026 14.5 13.1 2 2 3.7 2e+03 -1.5 0.0 140 152 326 338 311 341 0.78 Alpha-2-macroglobulin RAP, C-terminal domain HemX PF04375.14 338 pCP013117_00035 - 346 0.055 12.7 10.2 1 1 0.00031 0.17 11.2 10.7 26 104 186 264 179 273 0.86 HemX, putative uroporphyrinogen-III C-methyltransferase FlaC_arch PF05377.11 55 pCP013117_00035 - 346 0.064 13.6 0.6 1 2 0.16 88 3.6 5.0 6 33 194 221 185 228 0.63 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pCP013117_00035 - 346 0.064 13.6 0.6 2 2 0.00012 0.064 13.6 0.6 11 37 230 256 227 263 0.88 Flagella accessory protein C (FlaC) UPF0242 PF06785.11 193 pCP013117_00035 - 346 0.098 12.7 16.6 1 1 0.00033 0.18 11.9 16.6 59 158 181 293 174 313 0.74 Uncharacterised protein family (UPF0242) N-terminus Atg14 PF10186.9 319 pCP013117_00035 - 346 0.1 11.7 9.9 1 1 0.00027 0.15 11.2 9.9 37 129 188 274 128 332 0.66 Vacuolar sorting 38 and autophagy-related subunit 14 Phage_GPO PF05929.11 272 pCP013117_00035 - 346 0.11 12.1 8.3 1 1 0.00035 0.19 11.3 8.3 182 254 183 262 133 272 0.67 Phage capsid scaffolding protein (GPO) serine peptidase Golgin_A5 PF09787.9 306 pCP013117_00035 - 346 0.13 11.7 12.9 1 1 0.00037 0.2 11.1 12.9 70 152 182 264 128 338 0.76 Golgin subfamily A member 5 FlgN PF05130.12 146 pCP013117_00035 - 346 0.15 12.6 15.7 1 1 0.00056 0.31 11.6 15.7 25 109 185 265 182 296 0.88 FlgN protein TPR_MLP1_2 PF07926.12 129 pCP013117_00035 - 346 0.15 12.2 25.0 1 1 0.0036 1.9 8.5 25.0 11 98 187 274 178 281 0.83 TPR/MLP1/MLP2-like protein Fib_alpha PF08702.10 143 pCP013117_00035 - 346 0.21 11.8 7.5 1 1 0.00086 0.47 10.6 7.5 29 102 189 261 182 283 0.83 Fibrinogen alpha/beta chain family PCRF PF03462.18 193 pCP013117_00035 - 346 0.33 10.8 11.2 1 1 0.0014 0.75 9.6 11.2 12 95 185 265 173 271 0.62 PCRF domain DUF5320 PF17253.2 99 pCP013117_00035 - 346 0.35 12.0 6.6 1 2 0.032 17 6.5 0.9 56 98 180 220 143 221 0.67 Family of unknown function (DUF5320) DUF5320 PF17253.2 99 pCP013117_00035 - 346 0.35 12.0 6.6 2 2 0.013 7.3 7.7 0.6 68 98 228 258 224 259 0.89 Family of unknown function (DUF5320) DUF3578 PF12102.8 183 pCP013117_00035 - 346 0.77 9.3 6.4 1 2 1.3 6.8e+02 -0.3 0.4 101 124 190 214 179 232 0.61 Domain of unknown function (DUF3578) DUF3578 PF12102.8 183 pCP013117_00035 - 346 0.77 9.3 6.4 2 2 0.00022 0.12 12.0 0.9 105 160 239 293 224 308 0.85 Domain of unknown function (DUF3578) Uso1_p115_C PF04871.13 126 pCP013117_00035 - 346 0.81 10.1 23.3 1 2 1.3 6.8e+02 0.6 10.4 38 83 181 222 120 223 0.55 Uso1 / p115 like vesicle tethering protein, C terminal region Uso1_p115_C PF04871.13 126 pCP013117_00035 - 346 0.81 10.1 23.3 2 2 0.0009 0.49 10.8 20.6 7 85 194 278 184 280 0.77 Uso1 / p115 like vesicle tethering protein, C terminal region Fzo_mitofusin PF04799.13 161 pCP013117_00035 - 346 1.2 8.6 4.4 1 1 0.0026 1.4 8.4 3.4 102 156 199 253 181 257 0.89 fzo-like conserved region DUF2203 PF09969.9 122 pCP013117_00035 - 346 1.6 9.4 5.7 1 1 0.009 4.9 7.9 5.7 12 76 197 270 173 281 0.64 Uncharacterized conserved protein (DUF2203) Snapin_Pallidin PF14712.6 90 pCP013117_00035 - 346 1.8 9.0 12.1 1 2 1.8 9.7e+02 0.3 1.6 30 46 201 217 183 225 0.58 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 pCP013117_00035 - 346 1.8 9.0 12.1 2 2 0.00019 0.1 13.0 3.2 19 68 232 278 229 301 0.86 Snapin/Pallidin T3SS_basalb_I PF17001.5 96 pCP013117_00035 - 346 2.9 8.6 9.2 1 2 0.002 1.1 9.9 2.9 11 53 180 222 174 233 0.86 Type III secretion basal body protein I, YscI, HrpB, PscI T3SS_basalb_I PF17001.5 96 pCP013117_00035 - 346 2.9 8.6 9.2 2 2 0.67 3.6e+02 1.8 0.3 28 56 235 263 225 281 0.59 Type III secretion basal body protein I, YscI, HrpB, PscI ZapB PF06005.12 71 pCP013117_00035 - 346 3.2 8.3 27.1 1 2 0.3 1.6e+02 2.8 7.5 25 50 195 220 181 227 0.72 Cell division protein ZapB ZapB PF06005.12 71 pCP013117_00035 - 346 3.2 8.3 27.1 2 2 0.0017 0.9 10.0 11.6 26 67 234 280 232 281 0.68 Cell division protein ZapB Cwf_Cwc_15 PF04889.12 247 pCP013117_00035 - 346 3.4 7.3 16.3 1 1 0.0087 4.7 6.9 16.3 81 210 154 302 122 329 0.59 Cwf15/Cwc15 cell cycle control protein TMPIT PF07851.13 324 pCP013117_00035 - 346 4.4 6.5 8.7 1 1 0.012 6.8 5.8 8.7 2 73 195 270 174 337 0.59 TMPIT-like protein MutS_IV PF05190.18 92 pCP013117_00035 - 346 4.6 7.7 13.0 1 3 0.19 1e+02 3.3 1.3 4 30 195 221 193 226 0.89 MutS family domain IV MutS_IV PF05190.18 92 pCP013117_00035 - 346 4.6 7.7 13.0 2 3 0.0086 4.7 7.6 2.2 3 32 232 261 230 275 0.83 MutS family domain IV MutS_IV PF05190.18 92 pCP013117_00035 - 346 4.6 7.7 13.0 3 3 0.59 3.2e+02 1.8 0.0 12 34 321 343 310 346 0.82 MutS family domain IV LMBR1 PF04791.16 510 pCP013117_00035 - 346 5.4 5.8 6.0 1 1 0.012 6.4 5.6 6.0 209 296 187 272 113 333 0.62 LMBR1-like membrane protein DivIC PF04977.15 80 pCP013117_00035 - 346 6 6.7 14.6 1 2 0.75 4.1e+02 0.8 3.3 44 61 194 211 181 225 0.52 Septum formation initiator DivIC PF04977.15 80 pCP013117_00035 - 346 6 6.7 14.6 2 2 0.00074 0.4 10.5 3.6 32 51 234 253 229 277 0.66 Septum formation initiator 5_nucleotid PF05761.14 458 pCP013117_00035 - 346 6.5 5.5 8.6 1 1 0.018 9.6 5.0 8.6 336 404 188 262 181 273 0.76 5' nucleotidase family Csm1_N PF18504.1 70 pCP013117_00035 - 346 6.6 7.2 20.7 1 2 0.81 4.4e+02 1.3 8.2 29 61 190 222 183 229 0.59 Csm1 N-terminal domain Csm1_N PF18504.1 70 pCP013117_00035 - 346 6.6 7.2 20.7 2 2 0.00077 0.42 11.0 4.3 34 67 233 266 224 270 0.86 Csm1 N-terminal domain DUF2508 PF10704.9 71 pCP013117_00035 - 346 7.5 6.8 12.7 1 2 0.074 40 4.5 2.1 8 45 186 224 179 227 0.77 Protein of unknown function (DUF2508) DUF2508 PF10704.9 71 pCP013117_00035 - 346 7.5 6.8 12.7 2 2 0.023 12 6.1 3.1 12 37 239 265 232 278 0.78 Protein of unknown function (DUF2508) HalX PF08663.10 68 pCP013117_00035 - 346 9.3 6.7 17.5 1 2 0.23 1.2e+02 3.1 7.9 20 63 183 223 180 229 0.79 HalX domain HalX PF08663.10 68 pCP013117_00035 - 346 9.3 6.7 17.5 2 2 0.0049 2.7 8.4 2.4 34 60 239 265 227 270 0.76 HalX domain Mu-like_gpT PF10124.9 289 pCP013117_00036 - 295 3.4e-75 253.1 2.8 1 3 5.9e-42 1e-37 130.0 0.2 2 148 12 151 11 155 0.95 Mu-like prophage major head subunit gpT Mu-like_gpT PF10124.9 289 pCP013117_00036 - 295 3.4e-75 253.1 2.8 2 3 8.7e-17 1.6e-12 47.4 0.1 218 288 154 223 151 224 0.96 Mu-like prophage major head subunit gpT Mu-like_gpT PF10124.9 289 pCP013117_00036 - 295 3.4e-75 253.1 2.8 3 3 2.1e-25 3.8e-21 75.7 0.0 152 217 226 291 222 295 0.95 Mu-like prophage major head subunit gpT SplA PF11132.8 74 pCP013117_00037 - 89 0.0073 16.1 0.7 1 2 6.2e-05 0.37 10.6 0.2 30 62 15 46 5 52 0.75 Transcriptional regulator protein (SplA) SplA PF11132.8 74 pCP013117_00037 - 89 0.0073 16.1 0.7 2 2 0.0045 27 4.6 0.0 38 56 51 69 46 81 0.84 Transcriptional regulator protein (SplA) tRNA-synt_1g PF09334.11 391 pCP013117_00037 - 89 0.065 12.0 4.2 1 1 1.2e-05 0.073 11.8 4.2 151 220 9 79 3 84 0.88 tRNA synthetases class I (M) DNAP_B_exo_N PF08452.10 22 pCP013117_00037 - 89 1.6 8.2 6.8 1 3 0.0031 19 4.8 0.0 14 21 24 31 21 32 0.89 DNA polymerase family B exonuclease domain, N-terminal DNAP_B_exo_N PF08452.10 22 pCP013117_00037 - 89 1.6 8.2 6.8 2 3 0.013 77 2.8 0.3 15 21 39 45 36 46 0.89 DNA polymerase family B exonuclease domain, N-terminal DNAP_B_exo_N PF08452.10 22 pCP013117_00037 - 89 1.6 8.2 6.8 3 3 0.013 77 2.8 0.3 15 21 53 59 50 60 0.89 DNA polymerase family B exonuclease domain, N-terminal Peptidase_M15_3 PF08291.11 111 pCP013117_00040 - 129 1.4e-23 83.1 0.0 1 1 2.8e-27 1.6e-23 82.9 0.0 1 111 5 118 5 118 0.81 Peptidase M15 Peptidase_M15_2 PF05951.13 153 pCP013117_00040 - 129 4e-06 26.6 0.0 1 1 9e-10 5.4e-06 26.1 0.0 56 147 29 119 22 126 0.76 Bacterial protein of unknown function (DUF882) Extensin-like_C PF06904.12 177 pCP013117_00040 - 129 0.07 13.2 0.0 1 1 1.6e-05 0.094 12.7 0.0 83 114 48 82 15 98 0.83 Extensin-like protein C-terminus Phage_holin_3_3 PF16083.5 78 pCP013117_00044 - 104 3.3e-10 39.9 3.8 1 1 8.9e-14 4e-10 39.7 3.8 3 77 12 89 10 90 0.89 LydA holin phage, holin superfamily III Phage_holin_3_1 PF05106.12 99 pCP013117_00044 - 104 0.0016 18.8 1.7 1 1 1.1e-06 0.0047 17.3 1.6 46 99 43 100 13 100 0.83 Phage holin family (Lysis protein S) DUF3397 PF11877.8 112 pCP013117_00044 - 104 0.053 13.7 3.4 1 1 1.7e-05 0.076 13.2 3.4 59 111 10 62 3 63 0.90 Protein of unknown function (DUF3397) DUF3959 PF13105.6 240 pCP013117_00044 - 104 0.11 12.0 1.9 1 1 2.8e-05 0.12 11.8 1.9 1 73 13 88 13 96 0.89 Protein of unknown function (DUF3959) ResIII PF04851.15 171 pCP013117_00045 - 508 0.002 18.2 2.7 1 2 3.3e-07 0.0029 17.6 0.5 15 140 65 188 40 192 0.74 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP013117_00045 - 508 0.002 18.2 2.7 2 2 0.094 8.5e+02 -0.2 0.1 64 91 288 319 210 364 0.62 Type III restriction enzyme, res subunit Terminase_6C PF17289.2 155 pCP013117_00045 - 508 0.064 13.4 0.0 1 1 0.00011 1 9.5 0.0 2 152 335 480 334 481 0.67 Terminase RNaseH-like domain DUF935 PF06074.12 520 pCP013117_00046 - 460 2.8e-44 151.8 0.0 1 1 2e-47 1.8e-43 149.1 0.0 72 515 44 451 40 453 0.89 Protein of unknown function (DUF935) DUF2119 PF09892.9 188 pCP013117_00046 - 460 0.072 12.5 0.6 1 1 1.9e-05 0.17 11.3 0.6 134 175 391 433 347 446 0.79 Uncharacterized protein conserved in archaea (DUF2119) Phage_Mu_F PF04233.14 112 pCP013117_00047 - 377 1.6e-21 77.1 0.9 1 1 4.2e-25 3.8e-21 75.9 0.9 2 112 52 181 51 181 0.93 Phage Mu protein F like protein PBECR2 PF18810.1 119 pCP013117_00047 - 377 5.8e-14 52.4 0.5 1 1 1.5e-17 1.4e-13 51.2 0.5 11 119 255 375 245 375 0.84 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 Phage_tail_S PF05069.13 148 pCP013117_00048 - 159 1.6e-14 54.0 0.1 1 1 2.1e-18 1.9e-14 53.8 0.1 4 109 7 119 4 158 0.74 Phage virion morphogenesis family BORCS7 PF16088.5 103 pCP013117_00048 - 159 0.014 15.6 1.3 1 1 3.3e-06 0.03 14.6 1.0 9 57 33 80 29 89 0.88 BLOC-1-related complex sub-unit 7 DUF2387 PF09526.10 75 pCP013117_00049 - 63 0.00073 19.6 0.3 1 1 3.8e-07 0.00076 19.6 0.3 10 39 2 34 1 55 0.85 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.7 46 pCP013117_00049 - 63 0.0045 16.9 1.5 1 1 3.2e-06 0.0063 16.5 1.5 20 46 2 34 1 34 0.85 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 62 pCP013117_00049 - 63 0.07 13.5 0.1 1 1 4.3e-05 0.085 13.3 0.1 6 37 3 43 2 56 0.78 Restriction alleviation protein Lar eIF-5_eIF-2B PF01873.17 117 pCP013117_00049 - 63 0.11 12.4 2.0 1 1 7.7e-05 0.15 11.9 2.0 89 116 2 33 1 34 0.85 Domain found in IF2B/IF5 TFIIS_C PF01096.18 39 pCP013117_00049 - 63 0.13 12.2 5.2 1 1 0.00043 0.85 9.5 5.2 2 38 2 35 1 36 0.84 Transcription factor S-II (TFIIS) DUF1660 PF07874.11 64 pCP013117_00049 - 63 0.15 12.5 2.1 1 2 0.00037 0.74 10.3 0.3 24 43 2 22 1 26 0.84 Prophage protein (DUF1660) DUF1660 PF07874.11 64 pCP013117_00049 - 63 0.15 12.5 2.1 2 2 0.057 1.1e+02 3.3 0.2 21 44 24 56 18 62 0.48 Prophage protein (DUF1660) zinc_ribbon_2 PF13240.6 23 pCP013117_00049 - 63 0.24 11.2 2.6 1 2 0.025 50 3.8 0.3 2 8 3 9 2 11 0.74 zinc-ribbon domain zinc_ribbon_2 PF13240.6 23 pCP013117_00049 - 63 0.24 11.2 2.6 2 2 0.0017 3.3 7.5 0.1 11 21 21 33 17 35 0.78 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 30 pCP013117_00049 - 63 0.55 10.2 0.2 1 2 0.00028 0.55 10.2 0.2 20 28 1 9 1 9 0.95 PhnA Zinc-Ribbon PhnA_Zn_Ribbon PF08274.12 30 pCP013117_00049 - 63 0.55 10.2 0.2 2 2 0.67 1.3e+03 -0.6 0.2 5 9 28 32 27 33 0.73 PhnA Zinc-Ribbon UPF0547 PF10571.9 26 pCP013117_00049 - 63 1.1 9.4 4.2 1 2 0.024 47 4.2 0.6 3 8 3 8 2 9 0.83 Uncharacterised protein family UPF0547 UPF0547 PF10571.9 26 pCP013117_00049 - 63 1.1 9.4 4.2 2 2 0.0038 7.6 6.7 0.2 15 24 26 35 25 37 0.85 Uncharacterised protein family UPF0547 YopX PF09643.10 131 pCP013117_00052 - 128 1.3e-18 67.3 5.8 1 1 1.5e-22 2.7e-18 66.3 5.8 2 131 8 127 7 127 0.84 YopX protein MgtE_N PF03448.17 102 pCP013117_00053 - 90 5.1e-05 23.8 1.7 1 1 8.3e-08 0.00075 20.1 1.6 24 78 14 73 12 76 0.85 MgtE intracellular N domain CRISPR_Cas9_WED PF18061.1 137 pCP013117_00053 - 90 0.064 13.3 0.2 1 1 9.7e-06 0.087 12.9 0.2 24 72 12 61 5 87 0.81 CRISPR-Cas9 WED domain RNA_capsid PF03035.14 226 pCP013117_00054 - 70 0.034 14.2 0.3 1 1 1.9e-06 0.034 14.2 0.3 32 72 28 69 5 70 0.80 Calicivirus putative RNA polymerase/capsid protein Phage_Mu_Gam PF07352.12 155 pCP013117_00055 - 161 1.2e-33 116.2 4.5 1 1 2.3e-37 1.4e-33 116.0 4.5 2 155 7 152 6 152 0.98 Bacteriophage Mu Gam like protein NPM1-C PF16276.5 49 pCP013117_00055 - 161 0.054 13.5 0.1 1 2 2.7e-05 0.16 12.0 0.0 7 29 83 105 81 107 0.87 Nucleophosmin C-terminal domain NPM1-C PF16276.5 49 pCP013117_00055 - 161 0.054 13.5 0.1 2 2 1.4 8.5e+03 -3.2 0.0 28 34 144 150 141 155 0.69 Nucleophosmin C-terminal domain YvrJ PF12841.7 36 pCP013117_00055 - 161 0.38 10.3 2.6 1 3 0.36 2.2e+03 -1.7 0.0 21 33 14 26 14 28 0.76 YvrJ protein family YvrJ PF12841.7 36 pCP013117_00055 - 161 0.38 10.3 2.6 2 3 0.0065 39 3.9 0.1 18 31 95 108 93 109 0.82 YvrJ protein family YvrJ PF12841.7 36 pCP013117_00055 - 161 0.38 10.3 2.6 3 3 0.0028 17 5.1 0.1 18 26 149 157 148 159 0.91 YvrJ protein family DUF4406 PF14359.6 91 pCP013117_00056 - 113 0.0002 21.8 0.0 1 1 3.7e-08 0.00033 21.1 0.0 28 87 40 104 27 107 0.88 Domain of unknown function (DUF4406) DUF1937 PF09152.10 116 pCP013117_00056 - 113 0.0077 17.0 0.0 1 1 1.8e-06 0.016 16.0 0.0 3 48 4 49 2 109 0.71 Domain of unknown function (DUF1937) PVL_ORF50 PF07768.11 116 pCP013117_00057 - 143 7.3e-05 23.1 0.5 1 1 5.6e-09 0.0001 22.6 0.4 4 66 29 91 26 123 0.82 PVL ORF-50-like family Sigma70_r4 PF04545.16 50 pCP013117_00059 - 63 2.4e-08 33.4 0.1 1 1 1.2e-11 3e-08 33.0 0.1 21 49 1 29 1 30 0.96 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 54 pCP013117_00059 - 63 0.00011 21.8 0.1 1 1 5.8e-08 0.00015 21.4 0.1 27 54 1 28 1 28 0.98 Sigma-70, region 4 Sigma70_r3 PF04539.16 78 pCP013117_00059 - 63 0.0061 16.6 0.0 1 1 3.7e-06 0.0095 16.0 0.0 24 44 4 24 2 30 0.89 Sigma-70 region 3 HTH_Tnp_ISL3 PF13542.6 52 pCP013117_00059 - 63 0.0062 15.9 0.0 1 1 3e-06 0.0077 15.6 0.0 27 50 1 23 1 25 0.91 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 48 pCP013117_00059 - 63 0.014 14.9 0.0 1 1 8.4e-06 0.021 14.3 0.0 18 37 1 20 1 28 0.89 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 42 pCP013117_00059 - 63 0.014 15.2 0.0 1 1 8.2e-06 0.021 14.6 0.0 18 35 1 18 1 19 0.94 AsnC-type helix-turn-helix domain GerE PF00196.19 57 pCP013117_00059 - 63 0.022 14.3 0.1 1 1 1.3e-05 0.033 13.7 0.1 19 46 2 29 1 35 0.92 Bacterial regulatory proteins, luxR family AAA_22 PF13401.6 137 pCP013117_00060 - 285 1.2e-19 71.0 0.1 1 1 5.3e-22 2.9e-19 69.7 0.1 4 135 91 204 88 206 0.95 AAA domain TniB PF05621.11 189 pCP013117_00060 - 285 3e-09 36.6 0.8 1 1 2.9e-11 1.6e-08 34.2 0.8 36 169 93 206 79 225 0.83 Bacterial TniB protein AAA_30 PF13604.6 192 pCP013117_00060 - 285 5.1e-09 36.1 0.0 1 1 1.7e-11 9.2e-09 35.3 0.0 12 123 87 198 82 200 0.73 AAA domain AAA_16 PF13191.6 170 pCP013117_00060 - 285 1e-06 29.2 0.5 1 3 4.3 2.3e+03 -1.2 0.0 78 103 29 54 4 73 0.71 AAA ATPase domain AAA_16 PF13191.6 170 pCP013117_00060 - 285 1e-06 29.2 0.5 2 3 4.4e-08 2.4e-05 24.8 0.1 23 130 91 190 72 197 0.57 AAA ATPase domain AAA_16 PF13191.6 170 pCP013117_00060 - 285 1e-06 29.2 0.5 3 3 9 4.9e+03 -2.3 0.0 37 63 209 253 207 277 0.51 AAA ATPase domain AAA_7 PF12775.7 181 pCP013117_00060 - 285 2.2e-05 24.0 0.0 1 1 6.2e-08 3.4e-05 23.4 0.0 10 66 69 125 61 148 0.80 P-loop containing dynein motor region ABC_tran PF00005.27 137 pCP013117_00060 - 285 2.7e-05 24.7 0.4 1 2 3.5e-05 0.019 15.5 0.1 5 34 86 115 84 131 0.86 ABC transporter ABC_tran PF00005.27 137 pCP013117_00060 - 285 2.7e-05 24.7 0.4 2 2 0.019 10 6.6 0.0 117 135 154 172 144 173 0.89 ABC transporter AAA_19 PF13245.6 146 pCP013117_00060 - 285 6.3e-05 23.3 0.4 1 1 1.5e-06 0.00084 19.7 0.4 5 136 89 198 85 200 0.71 AAA domain Viral_helicase1 PF01443.18 234 pCP013117_00060 - 285 0.00024 20.9 0.0 1 1 7.2e-07 0.00039 20.2 0.0 2 75 96 176 95 192 0.68 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 131 pCP013117_00060 - 285 0.0006 19.8 0.1 1 1 2.2e-06 0.0012 18.9 0.1 2 100 92 199 91 234 0.68 AAA domain AAA PF00004.29 132 pCP013117_00060 - 285 0.00092 19.6 0.3 1 1 4.2e-06 0.0023 18.4 0.1 2 70 96 175 95 189 0.70 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 197 pCP013117_00060 - 285 0.0011 18.8 0.1 1 2 1.9e-05 0.01 15.6 0.0 5 33 95 124 91 182 0.77 AAA domain AAA_24 PF13479.6 197 pCP013117_00060 - 285 0.0011 18.8 0.1 2 2 0.64 3.5e+02 0.8 0.0 78 107 218 246 214 261 0.73 AAA domain ATPase_2 PF01637.18 233 pCP013117_00060 - 285 0.0014 18.6 3.0 1 2 2.9e-05 0.016 15.1 0.1 18 44 90 116 73 122 0.89 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pCP013117_00060 - 285 0.0014 18.6 3.0 2 2 0.14 77 3.1 0.4 93 130 139 175 121 192 0.77 ATPase domain predominantly from Archaea DUF2075 PF09848.9 363 pCP013117_00060 - 285 0.0015 17.9 0.1 1 1 6.3e-06 0.0034 16.7 0.1 1 152 92 218 92 223 0.74 Uncharacterized conserved protein (DUF2075) Cys_Met_Meta_PP PF01053.20 382 pCP013117_00060 - 285 0.0016 17.0 0.0 1 1 5.1e-06 0.0028 16.3 0.0 56 165 84 192 54 199 0.77 Cys/Met metabolism PLP-dependent enzyme Sigma54_activat PF00158.26 168 pCP013117_00060 - 285 0.002 17.8 0.0 1 1 6.4e-06 0.0035 17.1 0.0 14 116 84 186 72 198 0.78 Sigma-54 interaction domain AAA_11 PF13086.6 261 pCP013117_00060 - 285 0.0026 17.6 0.5 1 2 1.5e-05 0.008 16.0 0.1 10 79 85 144 79 166 0.75 AAA domain AAA_11 PF13086.6 261 pCP013117_00060 - 285 0.0026 17.6 0.5 2 2 2.1 1.1e+03 -0.9 0.0 215 226 161 172 146 174 0.62 AAA domain IstB_IS21 PF01695.17 178 pCP013117_00060 - 285 0.0027 17.5 0.2 1 1 1.7e-05 0.0092 15.7 0.1 39 123 84 178 68 186 0.72 IstB-like ATP binding protein AAA_5 PF07728.14 138 pCP013117_00060 - 285 0.0037 17.3 0.1 1 1 1.5e-05 0.008 16.2 0.1 3 106 96 204 94 262 0.85 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 167 pCP013117_00060 - 285 0.006 16.5 0.1 1 2 1.1 5.7e+02 0.3 0.0 95 137 2 43 1 46 0.78 RsgA GTPase RsgA_GTPase PF03193.16 167 pCP013117_00060 - 285 0.006 16.5 0.1 2 2 9.3e-05 0.051 13.5 0.0 93 123 85 116 45 132 0.77 RsgA GTPase ATPase PF06745.13 231 pCP013117_00060 - 285 0.0096 15.3 0.1 1 1 3.6e-05 0.019 14.3 0.1 16 42 89 115 80 172 0.89 KaiC T2SSE PF00437.20 273 pCP013117_00060 - 285 0.0099 15.0 0.1 1 1 3e-05 0.017 14.2 0.1 119 164 82 123 50 171 0.79 Type II/IV secretion system protein TK PF00265.18 177 pCP013117_00060 - 285 0.016 15.1 0.1 1 1 7.4e-05 0.04 13.8 0.0 3 117 94 204 92 220 0.76 Thymidine kinase Helicase_RecD PF05127.14 177 pCP013117_00060 - 285 0.019 14.8 0.7 1 2 0.21 1.1e+02 2.5 0.1 58 124 62 127 23 134 0.61 Helicase Helicase_RecD PF05127.14 177 pCP013117_00060 - 285 0.019 14.8 0.7 2 2 0.00022 0.12 12.2 0.2 3 113 98 188 96 200 0.63 Helicase PhoH PF02562.16 205 pCP013117_00060 - 285 0.021 14.2 0.2 1 2 0.00011 0.057 12.9 0.1 12 35 85 108 79 113 0.90 PhoH-like protein PhoH PF02562.16 205 pCP013117_00060 - 285 0.021 14.2 0.2 2 2 4.4 2.4e+03 -2.2 0.0 119 128 163 172 134 191 0.77 PhoH-like protein Rad17 PF03215.15 186 pCP013117_00060 - 285 0.028 14.3 0.1 1 2 0.0032 1.8 8.5 0.0 43 69 90 116 76 125 0.79 Rad17 P-loop domain Rad17 PF03215.15 186 pCP013117_00060 - 285 0.028 14.3 0.1 2 2 0.15 83 3.0 0.1 118 183 149 211 136 214 0.68 Rad17 P-loop domain HTH_19 PF12844.7 65 pCP013117_00060 - 285 0.04 14.0 1.0 1 3 0.024 13 5.9 0.0 4 36 8 40 6 47 0.90 Helix-turn-helix domain HTH_19 PF12844.7 65 pCP013117_00060 - 285 0.04 14.0 1.0 2 3 0.048 26 4.9 0.2 31 62 142 170 136 173 0.82 Helix-turn-helix domain HTH_19 PF12844.7 65 pCP013117_00060 - 285 0.04 14.0 1.0 3 3 4.9 2.7e+03 -1.5 0.0 34 54 247 266 242 280 0.61 Helix-turn-helix domain PEPCK_ATP PF01293.20 465 pCP013117_00060 - 285 0.045 12.4 0.0 1 1 0.00011 0.062 12.0 0.0 202 227 86 109 72 128 0.75 Phosphoenolpyruvate carboxykinase AAA_23 PF13476.6 200 pCP013117_00060 - 285 0.051 14.1 1.5 1 3 6 3.3e+03 -1.6 0.1 156 174 53 71 30 93 0.59 AAA domain AAA_23 PF13476.6 200 pCP013117_00060 - 285 0.051 14.1 1.5 2 3 9.4e-05 0.051 14.1 1.5 18 37 91 110 71 115 0.79 AAA domain AAA_23 PF13476.6 200 pCP013117_00060 - 285 0.051 14.1 1.5 3 3 6 3.3e+03 -1.6 1.1 176 176 204 204 132 275 0.55 AAA domain AAA_29 PF13555.6 61 pCP013117_00060 - 285 0.056 13.2 0.0 1 1 0.00021 0.11 12.2 0.0 19 39 89 109 81 113 0.86 P-loop containing region of AAA domain TFIIE_beta PF02186.15 68 pCP013117_00060 - 285 0.085 13.1 0.1 1 1 0.00039 0.21 11.9 0.1 17 55 127 171 106 177 0.73 TFIIE beta subunit core domain NB-ARC PF00931.22 252 pCP013117_00060 - 285 0.097 11.8 0.4 1 1 0.0008 0.43 9.7 0.4 21 43 93 115 80 172 0.72 NB-ARC domain RNA_helicase PF00910.22 107 pCP013117_00060 - 285 0.11 13.0 0.2 1 1 0.00073 0.4 11.1 0.0 2 26 96 120 95 174 0.86 RNA helicase AAA_25 PF13481.6 194 pCP013117_00060 - 285 0.18 11.4 0.0 1 2 0.0019 1 8.9 0.0 26 49 85 108 74 112 0.87 AAA domain AAA_25 PF13481.6 194 pCP013117_00060 - 285 0.18 11.4 0.0 2 2 2 1.1e+03 -1.0 0.0 146 165 132 151 121 166 0.67 AAA domain rve PF00665.26 119 pCP013117_00061 - 704 2.4e-11 43.8 0.0 1 1 8.5e-15 5.1e-11 42.8 0.0 22 117 344 441 315 443 0.86 Integrase core domain Mu-transpos_C PF09299.11 61 pCP013117_00061 - 704 9.5e-05 22.3 0.0 1 1 3.7e-08 0.00022 21.1 0.0 9 60 542 591 539 592 0.95 Mu transposase, C-terminal CSRNP_N PF16019.5 219 pCP013117_00061 - 704 0.33 10.8 4.2 1 2 0.00036 2.1 8.2 0.9 14 132 41 153 28 165 0.68 Cysteine/serine-rich nuclear protein N-terminus CSRNP_N PF16019.5 219 pCP013117_00061 - 704 0.33 10.8 4.2 2 2 0.011 67 3.3 0.1 12 103 579 666 574 690 0.54 Cysteine/serine-rich nuclear protein N-terminus HTH_3 PF01381.22 55 pCP013117_00064 - 267 3.6e-12 46.1 0.2 1 1 5.7e-15 9.2e-12 44.8 0.2 1 55 7 61 7 61 0.97 Helix-turn-helix Peptidase_S24 PF00717.23 70 pCP013117_00064 - 267 2.8e-11 43.2 0.0 1 2 2.2 3.6e+03 -2.0 0.0 11 24 62 75 61 94 0.73 Peptidase S24-like Peptidase_S24 PF00717.23 70 pCP013117_00064 - 267 2.8e-11 43.2 0.0 2 2 5.7e-14 9.2e-11 41.5 0.0 3 69 187 249 186 250 0.92 Peptidase S24-like HTH_19 PF12844.7 65 pCP013117_00064 - 267 6.9e-10 38.8 0.2 1 1 9.3e-13 1.5e-09 37.7 0.2 1 62 4 64 4 67 0.96 Helix-turn-helix domain HTH_31 PF13560.6 64 pCP013117_00064 - 267 1.4e-06 28.6 0.0 1 2 2.3e-09 3.8e-06 27.2 0.0 2 54 3 54 2 59 0.88 Helix-turn-helix domain HTH_31 PF13560.6 64 pCP013117_00064 - 267 1.4e-06 28.6 0.0 2 2 3.5 5.7e+03 -2.3 0.0 22 32 160 170 156 172 0.72 Helix-turn-helix domain HTH_25 PF13413.6 62 pCP013117_00064 - 267 3.6e-05 23.5 0.2 1 2 6.9e-08 0.00011 22.0 0.1 3 36 8 41 6 43 0.92 Helix-turn-helix domain HTH_25 PF13413.6 62 pCP013117_00064 - 267 3.6e-05 23.5 0.2 2 2 2.8 4.6e+03 -2.4 0.0 16 25 50 59 46 60 0.59 Helix-turn-helix domain HTH_23 PF13384.6 50 pCP013117_00064 - 267 0.009 15.8 0.1 1 2 2e-05 0.032 14.0 0.0 11 37 10 35 4 38 0.82 Homeodomain-like domain HTH_23 PF13384.6 50 pCP013117_00064 - 267 0.009 15.8 0.1 2 2 6.8 1.1e+04 -3.6 0.0 22 29 49 56 47 57 0.79 Homeodomain-like domain HTH_8 PF02954.19 42 pCP013117_00064 - 267 0.047 13.5 0.1 1 1 6.6e-05 0.11 12.3 0.1 15 36 12 33 6 34 0.90 Bacterial regulatory protein, Fis family Sigma70_r4_2 PF08281.12 54 pCP013117_00064 - 267 0.055 13.1 0.3 1 2 0.0001 0.17 11.6 0.0 21 46 10 35 5 35 0.91 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 54 pCP013117_00064 - 267 0.055 13.1 0.3 2 2 3.5 5.7e+03 -2.9 0.0 36 43 103 110 103 112 0.86 Sigma-70, region 4 YdaS_antitoxin PF15943.5 65 pCP013117_00064 - 267 0.13 12.2 0.0 1 1 0.00015 0.25 11.2 0.0 10 46 17 53 9 58 0.83 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT MerR PF00376.23 38 pCP013117_00064 - 267 0.14 12.0 0.0 1 2 0.00048 0.78 9.6 0.0 4 20 20 36 19 36 0.94 MerR family regulatory protein MerR PF00376.23 38 pCP013117_00064 - 267 0.14 12.0 0.0 2 2 1.9 3.1e+03 -2.0 0.0 7 17 160 170 159 170 0.88 MerR family regulatory protein HTH_24 PF13412.6 48 pCP013117_00064 - 267 0.15 11.7 0.9 1 2 0.0004 0.66 9.6 0.1 10 34 8 32 7 35 0.86 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP013117_00064 - 267 0.15 11.7 0.9 2 2 0.64 1e+03 -0.7 0.1 27 36 103 112 103 115 0.85 Winged helix-turn-helix DNA-binding Relaxase PF03432.14 242 pCP013117_00065 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP013117_00065 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pCP013117_00066 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP013117_00066 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP013117_00066 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP013117_00066 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP013117_00066 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP013117_00066 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP013117_00066 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pCP013117_00066 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP013117_00066 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pCP013117_00066 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP013117_00066 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 pCP013117_00067 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pCP013117_00067 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP013117_00067 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pCP013117_00067 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP013117_00067 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 pCP013117_00070 - 409 1.6e-08 34.8 0.2 1 2 1.1 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pCP013117_00070 - 409 1.6e-08 34.8 0.2 2 2 7.1e-12 4.3e-08 33.4 0.0 3 94 271 376 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pCP013117_00070 - 409 0.016 15.4 0.1 1 2 0.018 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pCP013117_00070 - 409 0.016 15.4 0.1 2 2 0.00022 1.3 9.3 0.0 15 83 283 359 277 369 0.80 Retrotransposon gag protein DUF2315 PF10231.9 123 pCP013117_00070 - 409 0.017 15.2 6.4 1 3 0.00021 1.2 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP013117_00070 - 409 0.017 15.2 6.4 2 3 0.0012 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP013117_00070 - 409 0.017 15.2 6.4 3 3 0.93 5.5e+03 -2.6 0.0 21 91 356 374 339 385 0.55 Apoptogenic protein 1 DUF4223 PF13978.6 54 pCP013117_00071 - 92 0.0072 16.3 0.0 1 1 1.5e-06 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pCP013117_00071 - 92 0.15 12.0 0.0 1 1 4e-05 0.36 10.8 0.0 9 39 22 56 16 59 0.84 STI1 domain TOPRIM_C PF16898.5 128 pCP013117_00072 - 69 0.029 14.7 1.5 1 1 1.7e-06 0.031 14.6 1.5 63 124 8 68 2 69 0.88 C-terminal associated domain of TOPRIM Pkinase PF00069.25 264 pCP013117_00073 - 336 5.1e-29 101.4 6.3 1 1 4.2e-32 9.5e-29 100.6 6.3 5 153 156 304 153 315 0.90 Protein kinase domain Pkinase_Tyr PF07714.17 259 pCP013117_00073 - 336 2e-26 92.8 0.9 1 1 1.4e-29 3.2e-26 92.2 0.9 6 158 157 303 154 315 0.88 Protein tyrosine kinase Pkinase_fungal PF17667.1 408 pCP013117_00073 - 336 4e-06 25.9 0.8 1 1 2.6e-09 5.9e-06 25.3 0.8 314 364 254 301 238 318 0.78 Fungal protein kinase DUF2841 PF11001.8 124 pCP013117_00073 - 336 0.0032 17.5 0.9 1 2 2.6 5.9e+03 -2.7 0.0 10 56 22 69 17 75 0.60 Protein of unknown function (DUF2841) DUF2841 PF11001.8 124 pCP013117_00073 - 336 0.0032 17.5 0.9 2 2 3.9e-06 0.0087 16.1 0.7 15 88 179 263 162 323 0.71 Protein of unknown function (DUF2841) RIO1 PF01163.22 188 pCP013117_00073 - 336 0.0073 15.9 2.5 1 2 2 4.5e+03 -3.0 0.0 20 34 46 60 37 78 0.60 RIO1 family RIO1 PF01163.22 188 pCP013117_00073 - 336 0.0073 15.9 2.5 2 2 3.3e-06 0.0073 15.9 2.5 25 150 167 291 151 302 0.74 RIO1 family ORC6 PF05460.13 357 pCP013117_00073 - 336 0.0086 15.4 0.2 1 1 5.4e-06 0.012 14.9 0.2 192 282 163 254 116 268 0.78 Origin recognition complex subunit 6 (ORC6) Pectate_lyase_3 PF12708.7 215 pCP013117_00073 - 336 0.068 13.0 0.4 1 1 6e-05 0.14 12.0 0.4 49 199 148 324 143 333 0.59 Pectate lyase superfamily protein Pex19 PF04614.12 244 pCP013117_00073 - 336 3.6 7.3 5.4 1 1 0.0033 7.5 6.2 5.4 152 207 172 228 168 231 0.87 Pex19 protein family HicB_lk_antitox PF15919.5 123 pCP013117_00075 - 72 3.6e-09 36.8 0.0 1 1 4.2e-13 3.8e-09 36.7 0.0 3 60 5 61 3 71 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 pCP013117_00075 - 72 0.065 12.6 0.0 1 1 7.9e-06 0.071 12.5 0.0 12 60 21 69 15 72 0.92 IRSp53/MIM homology domain AAA_25 PF13481.6 194 pCP013117_00076 - 597 1.8e-15 57.0 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP013117_00076 - 597 0.00087 18.7 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP013117_00076 - 597 0.00087 18.7 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP013117_00076 - 597 0.0012 18.6 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP013117_00076 - 597 0.0012 18.6 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 pCP013117_00076 - 597 0.0035 17.1 0.0 1 1 2.5e-06 0.0073 16.0 0.0 5 122 36 172 32 207 0.72 AAA domain ATPase PF06745.13 231 pCP013117_00076 - 597 0.011 15.1 0.1 1 2 2.1e-05 0.064 12.6 0.0 16 70 30 83 26 214 0.87 KaiC ATPase PF06745.13 231 pCP013117_00076 - 597 0.011 15.1 0.1 2 2 0.51 1.5e+03 -1.7 0.0 137 160 329 352 321 358 0.83 KaiC CbiA PF01656.23 128 pCP013117_00076 - 597 0.18 11.9 0.9 1 1 0.00018 0.53 10.4 1.0 1 29 35 63 35 537 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain GBR_NSP5 PF17580.2 176 pCP013117_00077 - 150 0.013 15.3 0.4 1 1 1.3e-06 0.024 14.5 0.4 17 64 43 90 26 97 0.78 Group B Rotavirus Non-structural protein 5 Resolvase PF00239.21 146 pCP013117_00079 - 204 1.6e-33 115.9 0.7 1 1 4.7e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP013117_00079 - 204 0.024 14.4 0.8 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP013117_00079 - 204 0.024 14.4 0.8 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP013117_00079 - 204 0.024 14.4 0.8 3 3 0.01 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP013117_00079 - 204 0.028 14.5 4.9 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP013117_00079 - 204 0.028 14.5 4.9 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP013117_00079 - 204 0.028 14.5 4.9 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCP013117_00079 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP013117_00079 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP013117_00079 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pCP013117_00080 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP013117_00080 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pCP013117_00080 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pCP013117_00082 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP013117_00082 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pCP013117_00083 - 922 1.3e-51 175.6 0.7 1 1 5e-55 3e-51 174.5 0.7 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP013117_00083 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pCP013117_00083 - 922 0.046 13.2 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pCP013117_00084 - 185 1e-28 99.7 0.0 1 1 1.8e-32 1.6e-28 99.1 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCP013117_00084 - 185 0.00048 20.2 0.0 1 1 1.1e-07 0.001 19.1 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) DUF3251 PF11622.8 165 pCP013117_00085 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pCP013117_00085 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pCP013117_00085 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pCP013117_00085 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP013117_00085 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP013117_00085 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pCP013117_00085 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP013117_00085 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP013117_00085 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pCP013117_00085 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pCP013117_00085 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pCP013117_00085 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP013117_00085 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP013117_00085 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pCP013117_00086 - 140 2.6e-25 88.5 0.1 1 1 1.9e-29 3.5e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pCP013117_00087 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP013117_00087 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP013117_00087 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP013117_00087 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP013117_00087 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP013117_00087 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP013117_00087 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pCP013117_00088 - 328 5e-28 98.9 13.9 1 1 2.4e-31 7.2e-28 98.3 13.9 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP013117_00088 - 328 0.0042 17.2 1.4 1 3 0.88 2.6e+03 -1.4 0.0 30 53 134 157 122 164 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP013117_00088 - 328 0.0042 17.2 1.4 2 3 5.4e-06 0.016 15.3 0.1 18 82 195 259 188 263 0.92 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP013117_00088 - 328 0.0042 17.2 1.4 3 3 1.2 3.7e+03 -1.9 0.0 62 79 302 319 292 327 0.75 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP013117_00088 - 328 0.007 17.1 5.8 1 2 0.034 1e+02 3.6 0.5 93 135 105 145 40 182 0.61 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP013117_00088 - 328 0.007 17.1 5.8 2 2 2.3e-06 0.007 17.1 5.8 47 125 219 315 203 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 pCP013117_00088 - 328 0.092 13.4 3.4 1 2 1.7 5.1e+03 -1.9 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP013117_00088 - 328 0.092 13.4 3.4 2 2 2.6e-05 0.078 13.6 1.0 32 84 209 270 202 295 0.83 von Willebrand factor type A domain Phage_holin_6_1 PF09682.10 101 pCP013117_00088 - 328 0.13 12.7 8.7 1 2 9.1e-05 0.27 11.7 0.3 4 62 77 136 75 154 0.81 Bacteriophage holin of superfamily 6 (Holin_LLH) Phage_holin_6_1 PF09682.10 101 pCP013117_00088 - 328 0.13 12.7 8.7 2 2 0.017 51 4.4 2.4 36 90 268 323 251 327 0.83 Bacteriophage holin of superfamily 6 (Holin_LLH) DUF3752 PF12572.8 152 pCP013117_00088 - 328 2.8 8.5 8.6 1 2 0.0033 9.9 6.7 0.4 21 49 106 136 98 153 0.70 Protein of unknown function (DUF3752) DUF3752 PF12572.8 152 pCP013117_00088 - 328 2.8 8.5 8.6 2 2 0.01 31 5.1 2.6 33 106 233 320 218 328 0.76 Protein of unknown function (DUF3752) TrbL PF04610.14 215 pCP013117_00089 - 330 4.7e-29 101.7 31.2 1 2 7.8e-33 4.7e-29 101.7 31.2 1 214 38 250 38 253 0.91 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP013117_00089 - 330 4.7e-29 101.7 31.2 2 2 0.11 6.3e+02 -0.0 0.4 55 88 281 324 242 330 0.42 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP013117_00089 - 330 0.22 11.3 1.3 1 2 0.19 1.2e+03 -0.6 0.1 38 65 68 101 59 114 0.50 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP013117_00089 - 330 0.22 11.3 1.3 2 2 0.00013 0.79 9.6 0.1 30 81 235 286 201 298 0.76 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP013117_00089 - 330 1.7 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 297 327 290 329 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pCP013117_00090 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP013117_00090 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pCP013117_00091 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP013117_00091 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pCP013117_00092 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP013117_00092 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP013117_00092 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pCP013117_00093 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP013117_00093 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pCP013117_00094 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP013117_00094 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP013117_00094 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP013117_00094 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP013117_00094 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP013117_00094 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP013117_00094 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP013117_00094 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP013117_00094 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP013117_00094 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP013117_00094 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP013117_00094 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP013117_00094 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP013117_00094 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP013117_00094 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP013117_00094 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP013117_00094 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP013117_00094 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP013117_00094 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP013117_00094 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP013117_00094 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP013117_00094 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP013117_00094 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP013117_00094 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP013117_00094 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP013117_00094 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP013117_00094 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP013117_00094 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP013117_00094 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP013117_00094 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP013117_00094 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP013117_00094 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pCP013117_00095 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP013117_00095 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP013117_00095 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP013117_00095 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP013117_00095 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pCP013117_00096 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pCP013117_00096 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pCP013117_00096 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP013117_00096 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP013117_00096 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pCP013117_00097 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pCP013117_00098 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCP013117_00098 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP013117_00098 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP013117_00098 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP013117_00098 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP013117_00098 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pCP013117_00100 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP013117_00100 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pCP013117_00101 - 676 9.9e-97 324.5 8.2 1 1 4.5e-100 1.4e-96 324.1 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP013117_00101 - 676 1.4e-12 47.7 0.4 1 2 3.1e-15 9.1e-12 45.1 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP013117_00101 - 676 1.4e-12 47.7 0.4 2 2 1.2 3.7e+03 -1.8 0.1 38 55 537 555 487 569 0.63 Toprim domain zinc_ribbon_9 PF14369.6 35 pCP013117_00101 - 676 0.05 13.9 0.7 1 2 2.9 8.5e+03 -2.9 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP013117_00101 - 676 0.05 13.9 0.7 2 2 2.7e-05 0.079 13.2 0.0 18 35 624 641 614 641 0.76 zinc-ribbon zf-C4_Topoisom PF01396.19 39 pCP013117_00101 - 676 0.057 13.2 2.4 1 1 5.4e-05 0.16 11.8 2.4 2 27 628 656 627 665 0.89 Topoisomerase DNA binding C4 zinc finger EF-hand_8 PF13833.6 55 pCP013117_00101 - 676 0.077 12.9 0.0 1 1 9.3e-05 0.28 11.1 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 pCP013117_00101 - 676 0.27 11.4 2.9 1 3 0.59 1.8e+03 -0.8 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP013117_00101 - 676 0.27 11.4 2.9 2 3 1.6 4.9e+03 -2.2 0.1 46 63 472 489 470 493 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP013117_00101 - 676 0.27 11.4 2.9 3 3 0.00026 0.78 10.0 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain PcfJ PF14284.6 144 pCP013117_00102 - 473 5.2e-05 23.2 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP013117_00102 - 473 0.022 14.7 4.0 1 2 0.14 1.2e+03 -0.7 0.2 12 60 218 271 211 299 0.70 Intein splicing domain Intein_splicing PF14890.6 134 pCP013117_00102 - 473 0.022 14.7 4.0 2 2 3.6e-06 0.032 14.2 1.5 37 125 311 444 264 453 0.74 Intein splicing domain GTP_EFTU PF00009.27 194 pCP013117_00104 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP013117_00104 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP013117_00104 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP013117_00104 - 639 1.2e-16 60.5 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP013117_00104 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 2.9e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP013117_00104 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP013117_00104 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP013117_00104 - 639 0.015 15.1 0.0 1 1 1.6e-05 0.031 14.1 0.0 42 82 377 417 344 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP013117_00104 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP013117_00104 - 639 0.047 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family CPT PF07931.12 174 pCP013117_00105 - 152 1e-05 25.5 0.0 1 1 2.7e-09 1.2e-05 25.2 0.0 59 172 26 143 4 145 0.81 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 130 pCP013117_00105 - 152 1.5e-05 25.6 0.0 1 1 4.5e-09 2e-05 25.1 0.0 45 124 20 106 2 112 0.76 AAA domain MKT1_N PF12247.8 90 pCP013117_00105 - 152 0.016 15.6 0.0 1 1 1.6e-05 0.073 13.4 0.0 14 52 10 46 8 122 0.88 Temperature dependent protein affecting M2 dsRNA replication AAA_33 PF13671.6 143 pCP013117_00105 - 152 0.023 14.9 0.0 1 1 7.6e-06 0.034 14.3 0.0 55 136 36 115 4 117 0.79 AAA domain APH PF01636.23 240 pCP013117_00106 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pCP013117_00106 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pCP013117_00106 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pCP013117_00106 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pCP013117_00106 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pCP013117_00106 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 pCP013117_00107 - 139 4.2e-51 174.0 0.1 1 1 2.7e-55 4.8e-51 173.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase Toprim_3 PF13362.6 95 pCP013735_00001 - 410 2.4e-08 34.2 0.1 1 2 1.4 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pCP013735_00001 - 410 2.4e-08 34.2 0.1 2 2 1.4e-11 6.4e-08 32.8 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pCP013735_00001 - 410 0.016 15.5 0.1 1 2 0.024 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pCP013735_00001 - 410 0.016 15.5 0.1 2 2 0.00028 1.2 9.4 0.0 15 83 283 359 277 378 0.81 Retrotransposon gag protein DUF2315 PF10231.9 123 pCP013735_00001 - 410 0.055 13.6 8.2 1 3 0.00028 1.3 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP013735_00001 - 410 0.055 13.6 8.2 2 3 0.0017 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP013735_00001 - 410 0.055 13.6 8.2 3 3 0.94 4.2e+03 -2.2 0.0 80 91 363 374 339 402 0.61 Apoptogenic protein 1 5_3_exonuc PF01367.20 97 pCP013735_00001 - 410 0.33 11.6 2.5 1 2 0.62 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP013735_00001 - 410 0.33 11.6 2.5 2 2 0.0001 0.47 11.1 0.4 15 81 322 384 321 405 0.71 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pCP013735_00002 - 87 0.0072 16.3 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pCP013735_00002 - 87 0.0072 16.3 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pCP013735_00002 - 87 0.12 12.4 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain TOPRIM_C PF16898.5 128 pCP013735_00003 - 69 0.029 14.7 1.5 1 1 1.7e-06 0.031 14.6 1.5 63 124 8 68 2 69 0.88 C-terminal associated domain of TOPRIM Pkinase PF00069.25 264 pCP013735_00004 - 390 2.6e-30 105.7 7.7 1 1 1.2e-33 4.2e-30 105.0 7.7 5 202 156 356 153 390 0.81 Protein kinase domain Pkinase_Tyr PF07714.17 259 pCP013735_00004 - 390 1.6e-26 93.2 0.7 1 1 6.2e-30 2.2e-26 92.7 0.7 6 163 157 308 154 380 0.85 Protein tyrosine kinase Pkinase_fungal PF17667.1 408 pCP013735_00004 - 390 4.7e-06 25.6 0.7 1 1 2e-09 7e-06 25.1 0.7 314 364 254 301 240 319 0.77 Fungal protein kinase DUF2841 PF11001.8 124 pCP013735_00004 - 390 0.0036 17.4 0.7 1 2 2.2 7.8e+03 -3.1 0.0 10 56 22 69 17 74 0.59 Protein of unknown function (DUF2841) DUF2841 PF11001.8 124 pCP013735_00004 - 390 0.0036 17.4 0.7 2 2 3.3e-06 0.012 15.7 0.7 15 88 179 263 162 323 0.71 Protein of unknown function (DUF2841) ORC6 PF05460.13 357 pCP013735_00004 - 390 0.011 15.0 0.2 1 1 4.6e-06 0.016 14.5 0.2 192 282 163 254 117 268 0.79 Origin recognition complex subunit 6 (ORC6) HicB_lk_antitox PF15919.5 123 pCP013735_00006 - 72 3.6e-09 36.8 0.0 1 1 4.2e-13 3.8e-09 36.7 0.0 3 60 5 61 3 71 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 pCP013735_00006 - 72 0.065 12.6 0.0 1 1 7.9e-06 0.071 12.5 0.0 12 60 21 69 15 72 0.92 IRSp53/MIM homology domain AAA_25 PF13481.6 194 pCP013735_00007 - 597 1.8e-15 57.0 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP013735_00007 - 597 0.00087 18.7 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP013735_00007 - 597 0.00087 18.7 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP013735_00007 - 597 0.0012 18.6 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP013735_00007 - 597 0.0012 18.6 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 pCP013735_00007 - 597 0.0035 17.1 0.0 1 1 2.5e-06 0.0073 16.0 0.0 5 122 36 172 32 207 0.72 AAA domain ATPase PF06745.13 231 pCP013735_00007 - 597 0.011 15.1 0.1 1 2 2.1e-05 0.064 12.6 0.0 16 70 30 83 26 214 0.87 KaiC ATPase PF06745.13 231 pCP013735_00007 - 597 0.011 15.1 0.1 2 2 0.51 1.5e+03 -1.7 0.0 137 160 329 352 321 358 0.83 KaiC CbiA PF01656.23 128 pCP013735_00007 - 597 0.18 11.9 0.9 1 1 0.00018 0.53 10.4 1.0 1 29 35 63 35 537 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain GBR_NSP5 PF17580.2 176 pCP013735_00008 - 150 0.011 15.6 0.4 1 1 1.3e-06 0.022 14.6 0.4 17 64 43 90 25 98 0.78 Group B Rotavirus Non-structural protein 5 Resolvase PF00239.21 146 pCP013735_00010 - 204 1.6e-33 115.9 0.7 1 1 4.7e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP013735_00010 - 204 0.024 14.4 0.8 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP013735_00010 - 204 0.024 14.4 0.8 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP013735_00010 - 204 0.024 14.4 0.8 3 3 0.01 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP013735_00010 - 204 0.028 14.5 4.9 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP013735_00010 - 204 0.028 14.5 4.9 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP013735_00010 - 204 0.028 14.5 4.9 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCP013735_00010 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP013735_00010 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP013735_00010 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pCP013735_00011 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP013735_00011 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pCP013735_00011 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pCP013735_00013 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP013735_00013 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pCP013735_00014 - 922 7.6e-52 176.4 0.8 1 1 4.1e-55 1.9e-51 175.1 0.8 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP013735_00014 - 922 7.3e-21 74.2 1.2 1 1 2.8e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 pCP013735_00014 - 922 3.8e-07 29.3 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 pCP013735_00014 - 922 0.038 14.1 5.5 1 5 0.46 2.1e+03 -1.4 0.1 96 202 139 253 124 278 0.55 Helicase HerA, central domain DUF87 PF01935.17 227 pCP013735_00014 - 922 0.038 14.1 5.5 2 5 0.36 1.6e+03 -1.0 0.1 88 126 264 300 242 418 0.70 Helicase HerA, central domain DUF87 PF01935.17 227 pCP013735_00014 - 922 0.038 14.1 5.5 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 pCP013735_00014 - 922 0.038 14.1 5.5 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 pCP013735_00014 - 922 0.038 14.1 5.5 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain Phage_pRha PF09669.10 88 pCP013735_00015 - 185 6.7e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCP013735_00015 - 185 0.0015 18.6 0.0 1 1 8.6e-07 0.0031 17.6 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pCP013735_00015 - 185 0.026 14.1 0.3 1 2 0.05 1.8e+02 1.6 0.1 80 118 33 71 5 80 0.74 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pCP013735_00015 - 185 0.026 14.1 0.3 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pCP013735_00015 - 185 0.081 12.9 0.1 1 1 6.1e-05 0.22 11.5 0.0 77 131 80 130 69 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pCP013735_00015 - 185 0.83 9.7 7.1 1 3 0.019 69 3.6 0.1 40 53 12 25 3 29 0.83 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP013735_00015 - 185 0.83 9.7 7.1 2 3 0.0022 7.9 6.6 0.9 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP013735_00015 - 185 0.83 9.7 7.1 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 DUF3895 PF13034.6 76 pCP013735_00016 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 pCP013735_00016 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) SSB PF00436.25 104 pCP013735_00017 - 141 7e-25 87.1 0.1 1 1 4.9e-29 8.8e-25 86.8 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pCP013735_00018 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP013735_00018 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP013735_00018 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP013735_00018 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP013735_00018 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP013735_00018 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP013735_00018 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pCP013735_00019 - 323 4.7e-28 98.9 14.1 1 1 2.7e-31 6.1e-28 98.6 14.1 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP013735_00019 - 323 0.0059 16.7 0.7 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP013735_00019 - 323 0.0059 16.7 0.7 2 2 9.1e-06 0.02 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP013735_00019 - 323 0.011 16.4 5.4 1 3 0.067 1.5e+02 3.0 0.3 92 135 104 145 41 149 0.59 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP013735_00019 - 323 0.011 16.4 5.4 2 3 0.12 2.6e+02 2.2 0.5 52 135 111 145 93 185 0.58 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP013735_00019 - 323 0.011 16.4 5.4 3 3 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pCP013735_00019 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pCP013735_00019 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pCP013735_00019 - 323 0.069 13.8 0.9 1 2 2.2 4.9e+03 -1.8 0.0 55 72 124 141 101 172 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP013735_00019 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain Allexi_40kDa PF05549.11 271 pCP013735_00019 - 323 0.81 9.1 5.0 1 2 0.21 4.8e+02 0.1 0.1 37 123 47 138 33 177 0.61 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pCP013735_00019 - 323 0.81 9.1 5.0 2 2 0.0002 0.46 10.0 1.6 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein THOC7 PF05615.13 132 pCP013735_00019 - 323 3 8.1 11.6 1 2 0.00072 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pCP013735_00019 - 323 3 8.1 11.6 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 DHR10 PF18595.1 117 pCP013735_00019 - 323 5.7 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pCP013735_00019 - 323 5.7 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain TrbL PF04610.14 215 pCP013735_00020 - 332 2.8e-30 105.7 31.4 1 2 4.7e-34 2.8e-30 105.7 31.4 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP013735_00020 - 332 2.8e-30 105.7 31.4 2 2 0.24 1.4e+03 -1.2 0.1 61 91 293 329 260 332 0.58 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP013735_00020 - 332 0.16 11.8 1.2 1 2 0.16 9.4e+02 -0.3 0.1 35 67 67 105 60 118 0.65 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP013735_00020 - 332 0.16 11.8 1.2 2 2 0.00011 0.68 9.8 0.1 28 81 238 288 209 301 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP013735_00020 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pCP013735_00021 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP013735_00021 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pCP013735_00022 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP013735_00022 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pCP013735_00023 - 295 2e-54 184.5 1.5 1 1 3.7e-58 3.3e-54 183.8 1.5 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP013735_00023 - 295 0.072 12.9 0.5 1 2 1.8e-05 0.16 11.8 0.0 1 51 1 51 1 66 0.92 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP013735_00023 - 295 0.072 12.9 0.5 2 2 1.1 9.7e+03 -3.7 0.1 50 62 130 142 124 149 0.68 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pCP013735_00024 - 391 3.3e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP013735_00024 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pCP013735_00025 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP013735_00025 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP013735_00025 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP013735_00025 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP013735_00025 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP013735_00025 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP013735_00025 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP013735_00025 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP013735_00025 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP013735_00025 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP013735_00025 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP013735_00025 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP013735_00025 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP013735_00025 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP013735_00025 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP013735_00025 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP013735_00025 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP013735_00025 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP013735_00025 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP013735_00025 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP013735_00025 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP013735_00025 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP013735_00025 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP013735_00025 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP013735_00025 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP013735_00025 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP013735_00025 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP013735_00025 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP013735_00025 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP013735_00025 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP013735_00025 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP013735_00025 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pCP013735_00026 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP013735_00026 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP013735_00026 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP013735_00026 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP013735_00026 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pCP013735_00027 - 145 5.5e-17 62.1 0.4 1 1 1.2e-20 6.9e-17 61.8 0.4 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pCP013735_00027 - 145 0.068 13.0 0.2 1 1 3.3e-05 0.19 11.5 0.2 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP013735_00027 - 145 3.9 7.4 6.0 1 2 0.00075 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP013735_00027 - 145 3.9 7.4 6.0 2 2 0.16 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pCP013735_00028 - 216 8.4e-36 123.3 1.7 1 1 6e-40 1.1e-35 122.9 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pCP013735_00029 - 265 0.038 13.8 0.4 1 2 0.3 5.4e+03 -2.9 0.1 129 153 22 46 15 49 0.68 PRELI-like family PRELI PF04707.14 157 pCP013735_00029 - 265 0.038 13.8 0.4 2 2 2.1e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Redoxin PF08534.10 147 pCP013735_00031 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP013735_00031 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pCP013735_00032 - 730 1.1e-97 327.7 8.1 1 1 1.5e-100 1.6e-97 327.2 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP013735_00032 - 730 4.4e-12 46.1 2.6 1 2 6.1e-15 6.4e-12 45.6 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP013735_00032 - 730 4.4e-12 46.1 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP013735_00032 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP013735_00032 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP013735_00032 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP013735_00032 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP013735_00032 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP013735_00032 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP013735_00032 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP013735_00032 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP013735_00032 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pCP013735_00032 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pCP013735_00032 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pCP013735_00032 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP013735_00032 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP013735_00032 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP013735_00032 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pCP013735_00032 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pCP013735_00032 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP013735_00032 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pCP013735_00032 - 730 0.43 10.8 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP013735_00032 - 730 0.43 10.8 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP013735_00032 - 730 0.43 10.8 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP013735_00032 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP013735_00032 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP013735_00032 - 730 0.63 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP013735_00032 - 730 0.63 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP013735_00032 - 730 0.73 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP013735_00032 - 730 0.73 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP013735_00032 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP013735_00032 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP013735_00032 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP013735_00032 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pCP013735_00033 - 462 0.00012 22.0 2.7 1 1 3.5e-08 0.00031 20.6 2.7 4 133 331 456 328 461 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP013735_00033 - 462 0.035 14.0 4.6 1 1 2.8e-05 0.25 11.3 4.6 37 125 311 444 210 452 0.79 Intein splicing domain Ribonuc_2-5A PF06479.12 127 pCP013735_00034 - 105 0.022 14.9 1.5 1 1 3.3e-06 0.03 14.5 1.5 46 91 18 66 2 89 0.78 Ribonuclease 2-5A DUF5311 PF17238.2 194 pCP013735_00034 - 105 0.053 13.4 0.0 1 1 6.9e-06 0.062 13.2 0.0 89 122 26 61 10 77 0.80 Family of unknown function (DUF5311) T6SS-SciN PF12790.7 120 pCP014345_00001 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 428 pCP014345_00002 - 465 4.7e-112 374.8 0.0 1 1 3.1e-116 5.5e-112 374.6 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 205 pCP014345_00003 - 257 3.6e-35 121.5 0.0 1 1 2.3e-39 4.2e-35 121.4 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_HCP PF05638.12 129 pCP014345_00004 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 259 pCP014345_00005 - 1175 6.2e-41 140.5 0.0 1 1 4.1e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 pCP014345_00005 - 1175 5.9e-40 137.1 0.5 1 1 4.1e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 pCP014345_00005 - 1175 8.2e-27 94.5 2.1 1 1 4.9e-30 1.3e-26 93.9 2.1 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 pCP014345_00005 - 1175 0.0003 20.7 0.0 1 2 8.9e-06 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 pCP014345_00005 - 1175 0.0003 20.7 0.0 2 2 0.047 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 pCP014345_00005 - 1175 0.0011 19.0 0.1 1 2 1.7e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 pCP014345_00005 - 1175 0.0011 19.0 0.1 2 2 4.1 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 pCP014345_00005 - 1175 0.0041 16.8 4.8 1 3 1.4e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 pCP014345_00005 - 1175 0.0041 16.8 4.8 2 3 0.13 3.4e+02 0.8 0.0 41 77 451 487 432 583 0.80 O-Antigen ligase Wzy_C PF04932.15 155 pCP014345_00005 - 1175 0.0041 16.8 4.8 3 3 0.076 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 pCP014345_00005 - 1175 0.055 13.2 0.1 1 2 0.00017 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pCP014345_00005 - 1175 0.055 13.2 0.1 2 2 0.76 1.9e+03 -1.3 0.0 22 37 841 856 831 870 0.75 P-loop containing region of AAA domain FHA PF00498.26 69 pCP014345_00006 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 pCP014345_00006 - 299 0.0007 19.9 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 pCP014345_00006 - 299 0.0007 19.9 0.0 2 2 0.23 1.4e+03 -0.3 0.0 31 57 199 225 198 231 0.89 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 pCP014345_00006 - 299 0.05 14.0 3.1 1 2 0.044 2.6e+02 2.1 0.1 18 58 107 147 105 150 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 pCP014345_00006 - 299 0.05 14.0 3.1 2 2 7.4e-05 0.44 11.0 0.9 21 82 151 212 146 218 0.92 Ferredoxin-fold anticodon binding domain DUF2974 PF11187.8 224 pCP014345_00010 - 500 3.9e-08 33.1 0.1 1 1 5.2e-11 1e-07 31.7 0.1 7 123 73 202 69 240 0.76 Protein of unknown function (DUF2974) Lipase_3 PF01764.25 142 pCP014345_00010 - 500 6.3e-08 32.6 0.0 1 1 8.8e-11 1.8e-07 31.1 0.0 50 114 145 210 91 227 0.81 Lipase (class 3) DUF676 PF05057.14 219 pCP014345_00010 - 500 3.1e-05 23.6 0.0 1 1 3.4e-08 6.8e-05 22.5 0.0 63 106 143 186 106 203 0.76 Putative serine esterase (DUF676) PGAP1 PF07819.13 231 pCP014345_00010 - 500 4.2e-05 23.4 0.4 1 2 4.3e-07 0.00085 19.1 0.0 76 114 147 182 95 201 0.75 PGAP1-like protein PGAP1 PF07819.13 231 pCP014345_00010 - 500 4.2e-05 23.4 0.4 2 2 0.08 1.6e+02 1.8 0.3 30 83 261 315 244 329 0.75 PGAP1-like protein LIDHydrolase PF10230.9 266 pCP014345_00010 - 500 0.00084 19.0 0.0 1 1 8.7e-07 0.0017 17.9 0.0 66 101 141 175 100 186 0.72 Lipid-droplet associated hydrolase Abhydrolase_6 PF12697.7 220 pCP014345_00010 - 500 0.0016 19.1 0.0 1 1 1.1e-06 0.0022 18.6 0.0 51 87 144 184 114 228 0.75 Alpha/beta hydrolase family UPF0227 PF05728.12 187 pCP014345_00010 - 500 0.0033 17.4 0.1 1 2 1.5e-05 0.029 14.3 0.0 45 80 146 180 126 196 0.77 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pCP014345_00010 - 500 0.0033 17.4 0.1 2 2 0.43 8.5e+02 -0.2 0.0 115 145 380 411 357 428 0.73 Uncharacterised protein family (UPF0227) DUF4450 PF14614.6 217 pCP014345_00010 - 500 0.036 13.6 1.9 1 3 3 6e+03 -3.4 0.1 102 127 18 46 16 61 0.61 Domain of unknown function (DUF4450) DUF4450 PF14614.6 217 pCP014345_00010 - 500 0.036 13.6 1.9 2 3 3.2 6.3e+03 -3.5 0.0 156 173 329 346 319 348 0.71 Domain of unknown function (DUF4450) DUF4450 PF14614.6 217 pCP014345_00010 - 500 0.036 13.6 1.9 3 3 2.3e-05 0.045 13.3 0.1 6 48 435 477 432 484 0.94 Domain of unknown function (DUF4450) SBDS PF01172.18 88 pCP014345_00010 - 500 0.11 12.6 1.6 1 1 0.00041 0.82 9.8 1.5 8 31 396 420 390 476 0.78 Shwachman-Bodian-Diamond syndrome (SBDS) protein Lipase_3 PF01764.25 142 pCP014345_00012 - 245 1.5e-08 34.6 0.0 1 1 3.1e-11 5e-08 32.9 0.0 50 113 176 240 139 243 0.77 Lipase (class 3) DUF2974 PF11187.8 224 pCP014345_00012 - 245 3.1e-08 33.4 0.0 1 1 3.1e-11 5e-08 32.8 0.0 7 123 100 233 95 236 0.71 Protein of unknown function (DUF2974) DUF676 PF05057.14 219 pCP014345_00012 - 245 1.1e-05 25.0 0.1 1 1 1.4e-08 2.3e-05 24.0 0.1 63 117 174 227 168 235 0.71 Putative serine esterase (DUF676) PGAP1 PF07819.13 231 pCP014345_00012 - 245 5.6e-05 23.0 0.1 1 1 5.9e-08 9.7e-05 22.2 0.1 46 114 128 213 98 235 0.75 PGAP1-like protein LIDHydrolase PF10230.9 266 pCP014345_00012 - 245 0.00041 20.0 0.1 1 1 3.9e-07 0.00064 19.3 0.1 67 101 173 206 133 218 0.72 Lipid-droplet associated hydrolase Abhydrolase_6 PF12697.7 220 pCP014345_00012 - 245 0.00064 20.4 0.0 1 1 5.3e-07 0.00086 20.0 0.0 51 86 175 211 138 241 0.75 Alpha/beta hydrolase family UPF0227 PF05728.12 187 pCP014345_00012 - 245 0.0014 18.6 0.3 1 2 1.3 2.1e+03 -1.5 0.1 115 148 46 79 32 96 0.58 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pCP014345_00012 - 245 0.0014 18.6 0.3 2 2 2.2e-06 0.0036 17.3 0.0 24 80 154 211 143 227 0.68 Uncharacterised protein family (UPF0227) Palm_thioest PF02089.15 242 pCP014345_00012 - 245 0.014 15.3 1.8 1 2 0.44 7.2e+02 -0.2 0.5 152 206 29 91 18 115 0.65 Palmitoyl protein thioesterase Palm_thioest PF02089.15 242 pCP014345_00012 - 245 0.014 15.3 1.8 2 2 1.6e-05 0.027 14.3 0.0 30 88 158 212 137 231 0.74 Palmitoyl protein thioesterase NMT PF01233.19 160 pCP014345_00012 - 245 0.079 12.8 0.2 1 1 7e-05 0.11 12.3 0.2 28 123 90 188 62 195 0.79 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain Hydrolase_4 PF12146.8 239 pCP014345_00012 - 245 0.17 11.2 0.0 1 1 0.00017 0.28 10.4 0.0 65 94 181 208 169 224 0.67 Serine aminopeptidase, S33 Ser_hydrolase PF06821.13 171 pCP014345_00012 - 245 0.17 11.7 0.0 1 1 0.00017 0.28 11.0 0.0 6 71 141 206 138 219 0.80 Serine hydrolase DUF2070 PF09843.9 564 pCP014345_00013 - 114 0.082 11.2 10.5 1 1 3.2e-05 0.094 11.0 10.5 80 172 9 105 3 113 0.74 Predicted membrane protein (DUF2070) DUF4199 PF13858.6 168 pCP014345_00013 - 114 0.094 13.1 17.4 1 2 0.0018 5.3 7.4 8.4 6 59 11 62 7 66 0.60 Protein of unknown function (DUF4199) DUF4199 PF13858.6 168 pCP014345_00013 - 114 0.094 13.1 17.4 2 2 0.00012 0.35 11.2 2.1 14 60 68 110 63 114 0.46 Protein of unknown function (DUF4199) Glucos_trans_II PF14264.6 297 pCP014345_00013 - 114 0.2 11.0 22.9 1 2 0.0032 9.7 5.4 14.2 226 282 5 59 2 78 0.65 Glucosyl transferase GtrII Glucos_trans_II PF14264.6 297 pCP014345_00013 - 114 0.2 11.0 22.9 2 2 0.0014 4.3 6.6 6.7 148 248 64 104 58 113 0.46 Glucosyl transferase GtrII ABC2_membrane_5 PF13346.6 206 pCP014345_00013 - 114 0.31 10.5 21.7 1 2 0.035 1.1e+02 2.3 8.8 3 50 3 43 1 53 0.47 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 206 pCP014345_00013 - 114 0.31 10.5 21.7 2 2 7.8e-06 0.023 14.2 5.5 2 65 53 113 51 114 0.71 ABC-2 family transporter protein DUF5385 PF17359.2 220 pCP014345_00013 - 114 0.4 10.2 9.3 1 2 0.058 1.7e+02 1.6 0.6 5 30 35 61 32 67 0.59 Family of unknown function (DUF5385) DUF5385 PF17359.2 220 pCP014345_00013 - 114 0.4 10.2 9.3 2 2 2.8e-05 0.085 12.4 2.6 2 31 81 112 80 114 0.50 Family of unknown function (DUF5385) DUF3784 PF12650.7 94 pCP014345_00013 - 114 4.8 7.4 22.3 1 2 0.067 2e+02 2.3 7.2 48 90 10 56 3 60 0.64 Domain of unknown function (DUF3784) DUF3784 PF12650.7 94 pCP014345_00013 - 114 4.8 7.4 22.3 2 2 7.4e-05 0.22 11.7 8.0 42 93 57 106 51 108 0.77 Domain of unknown function (DUF3784) RseC_MucC PF04246.12 130 pCP014345_00014 - 93 9.1 6.3 6.3 1 2 0.085 1.5e+03 -1.0 0.1 78 96 5 22 3 31 0.58 Positive regulator of sigma(E), RseC/MucC RseC_MucC PF04246.12 130 pCP014345_00014 - 93 9.1 6.3 6.3 2 2 0.00014 2.4 8.1 3.1 62 112 32 81 27 91 0.74 Positive regulator of sigma(E), RseC/MucC AAA_31 PF13614.6 177 pCP014345_00016 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 pCP014345_00016 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pCP014345_00016 - 186 0.0018 18.3 0.5 1 1 2.7e-06 0.016 15.3 0.5 1 55 3 89 3 164 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP014345_00016 - 186 0.014 14.9 0.0 1 1 3.1e-06 0.019 14.4 0.0 17 109 69 171 61 180 0.77 short chain dehydrogenase RHH_7 PF16777.5 74 pCP014345_00017 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 pCP014345_00017 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal OrfB_IS605 PF01385.19 120 pCP014345_00018 - 90 1.8e-12 47.5 1.0 1 1 1.4e-16 2.5e-12 47.1 1.0 62 117 7 62 6 65 0.96 Probable transposase AAA_25 PF13481.6 194 pCP014345_00019 - 599 2.9e-15 56.3 0.0 1 1 2.4e-18 6.2e-15 55.3 0.0 30 193 30 175 23 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP014345_00019 - 599 0.00024 20.5 0.0 1 2 3.9e-06 0.01 15.2 0.0 16 109 30 128 25 130 0.81 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP014345_00019 - 599 0.00024 20.5 0.0 2 2 0.0039 10 5.4 0.0 121 183 112 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP014345_00019 - 599 0.0012 18.6 0.0 1 2 9.7e-06 0.025 14.3 0.0 46 85 32 71 23 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP014345_00019 - 599 0.0012 18.6 0.0 2 2 0.11 2.7e+02 1.2 0.0 96 119 108 131 98 171 0.69 IstB-like ATP binding protein AAA_24 PF13479.6 197 pCP014345_00019 - 599 0.0029 17.4 0.0 1 1 2.3e-06 0.006 16.3 0.0 5 122 36 172 32 206 0.73 AAA domain ATPase PF06745.13 231 pCP014345_00019 - 599 0.0041 16.5 0.1 1 2 1.2e-05 0.03 13.7 0.0 16 77 30 89 25 215 0.63 KaiC ATPase PF06745.13 231 pCP014345_00019 - 599 0.0041 16.5 0.1 2 2 0.65 1.7e+03 -1.9 0.0 137 160 329 352 322 358 0.84 KaiC AAA PF00004.29 132 pCP014345_00019 - 599 0.053 13.9 0.8 1 3 0.00026 0.67 10.4 0.0 2 106 37 167 36 174 0.61 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP014345_00019 - 599 0.053 13.9 0.8 2 3 0.36 9.1e+02 0.2 0.0 57 74 417 436 383 456 0.76 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP014345_00019 - 599 0.053 13.9 0.8 3 3 3.5 9e+03 -3.0 0.0 23 49 497 525 477 529 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pCP014345_00019 - 599 0.16 12.1 0.8 1 1 0.00019 0.49 10.5 0.8 1 29 35 63 35 551 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain HicA_toxin PF07927.12 58 pCP014345_00020 - 67 6.2e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pCP014345_00021 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Peptidase_M4_C PF02868.15 168 pCP014345_00022 - 100 0.051 13.4 0.1 1 1 3.8e-06 0.068 13.0 0.1 103 150 12 59 4 65 0.90 Thermolysin metallopeptidase, alpha-helical domain AAA_31 PF13614.6 177 pCP014345_00025 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 pCP014345_00025 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pCP014345_00025 - 186 0.0018 18.3 0.5 1 1 2.7e-06 0.016 15.3 0.5 1 55 3 89 3 164 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP014345_00025 - 186 0.014 14.9 0.0 1 1 3.1e-06 0.019 14.4 0.0 17 109 69 171 61 180 0.77 short chain dehydrogenase RHH_7 PF16777.5 74 pCP014345_00026 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 pCP014345_00026 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal NYN PF01936.18 147 pCP014345_00028 - 180 1.1e-09 39.0 0.0 1 1 2e-13 1.2e-09 38.8 0.0 60 123 74 146 15 161 0.80 NYN domain Peroxin-22 PF12827.7 113 pCP014345_00028 - 180 0.004 17.0 0.6 1 1 1.3e-06 0.0079 16.1 0.6 25 105 81 162 46 169 0.76 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 pCP014345_00028 - 180 0.029 15.0 0.0 1 1 8.3e-06 0.049 14.2 0.0 61 103 100 142 77 142 0.87 PIN domain Toprim_3 PF13362.6 95 pCP014345_00030 - 409 2.4e-08 34.2 0.1 1 2 1.4 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pCP014345_00030 - 409 2.4e-08 34.2 0.1 2 2 1.4e-11 6.4e-08 32.9 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pCP014345_00030 - 409 0.017 15.4 0.2 1 2 0.024 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pCP014345_00030 - 409 0.017 15.4 0.2 2 2 0.00027 1.2 9.4 0.0 15 83 283 359 277 382 0.82 Retrotransposon gag protein DUF2315 PF10231.9 123 pCP014345_00030 - 409 0.023 14.8 6.8 1 3 0.00028 1.3 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP014345_00030 - 409 0.023 14.8 6.8 2 3 0.0016 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP014345_00030 - 409 0.023 14.8 6.8 3 3 1.3 5.9e+03 -2.7 0.0 20 90 355 373 339 384 0.54 Apoptogenic protein 1 5_3_exonuc PF01367.20 97 pCP014345_00030 - 409 0.25 12.0 1.7 1 2 0.62 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP014345_00030 - 409 0.25 12.0 1.7 2 2 0.00012 0.53 10.9 0.2 15 81 322 384 321 401 0.72 5'-3' exonuclease, C-terminal SAM fold Put_DNA-bind_N PF06971.13 49 pCP014345_00032 - 141 0.016 15.2 0.0 1 1 1.5e-06 0.027 14.5 0.0 11 34 4 27 3 30 0.95 Putative DNA-binding protein N-terminus BLOC1_2 PF10046.9 96 pCP014345_00033 - 432 0.049 13.9 1.0 1 1 2.8e-05 0.25 11.7 1.0 44 95 263 314 260 315 0.94 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2459 PF09601.10 171 pCP014345_00033 - 432 0.053 13.3 1.1 1 2 1.3e-05 0.12 12.2 0.1 87 163 131 199 119 201 0.72 Protein of unknown function (DUF2459) DUF2459 PF09601.10 171 pCP014345_00033 - 432 0.053 13.3 1.1 2 2 0.32 2.8e+03 -2.1 0.1 143 143 289 289 239 346 0.63 Protein of unknown function (DUF2459) SseC PF04888.12 317 pCP014345_00036 - 1310 0.005 16.5 0.2 1 1 3e-06 0.014 15.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family ThrE PF06738.12 241 pCP014345_00036 - 1310 0.014 14.8 0.8 1 1 7.8e-06 0.035 13.5 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter Hormone_2 PF00123.20 28 pCP014345_00036 - 1310 0.036 14.0 0.1 1 1 3.5e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone APOBEC_C PF05240.14 78 pCP014345_00036 - 1310 0.061 13.3 0.4 1 1 6.9e-05 0.31 11.0 0.4 26 76 766 819 755 821 0.85 APOBEC-like C-terminal domain UvrA_DNA-bind PF17755.1 110 pCP014345_00037 - 422 0.008 16.5 0.4 1 2 0.00015 2.8 8.3 0.1 24 65 32 73 19 86 0.82 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pCP014345_00037 - 422 0.008 16.5 0.4 2 2 0.00087 16 5.9 0.0 15 33 92 109 88 125 0.75 UvrA DNA-binding domain Glyco_tranf_2_5 PF13712.6 210 pCP014345_00038 - 267 0.00068 19.4 3.8 1 1 7.1e-08 0.0013 18.5 3.8 4 77 114 190 111 198 0.85 Glycosyltransferase like family TraG_N PF07916.11 467 pCP014345_00039 - 838 1.5e-38 132.9 22.2 1 3 1.7e-42 1.5e-38 132.9 22.2 13 465 3 449 1 455 0.80 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pCP014345_00039 - 838 1.5e-38 132.9 22.2 2 3 0.13 1.2e+03 -2.0 0.2 229 301 546 613 528 633 0.43 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pCP014345_00039 - 838 1.5e-38 132.9 22.2 3 3 0.39 3.5e+03 -3.5 4.5 210 295 632 724 584 756 0.53 TraG-like protein, N-terminal region CHMI PF02962.15 124 pCP014345_00039 - 838 0.0083 16.5 0.0 1 1 6.3e-06 0.057 13.8 0.0 46 120 68 144 11 148 0.82 5-carboxymethyl-2-hydroxymuconate isomerase YafQ_toxin PF15738.5 88 pCP014345_00041 - 93 2.5e-24 85.4 5.0 1 1 6.3e-28 2.8e-24 85.2 5.0 1 88 4 91 4 91 0.93 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 pCP014345_00041 - 93 9.5e-06 26.1 0.3 1 1 2.7e-09 1.2e-05 25.8 0.3 3 89 8 89 6 90 0.79 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 87 pCP014345_00041 - 93 0.00012 22.0 2.5 1 1 3.3e-08 0.00015 21.7 2.5 3 84 8 91 6 93 0.81 ParE-like toxin of type II bacterial toxin-antitoxin system BTHB PF18410.1 72 pCP014345_00041 - 93 0.086 12.7 1.5 1 3 0.04 1.8e+02 2.0 0.1 53 66 11 24 5 30 0.79 Basic tilted helix bundle domain BTHB PF18410.1 72 pCP014345_00041 - 93 0.086 12.7 1.5 2 3 0.16 7.4e+02 0.1 0.0 45 61 31 47 22 48 0.82 Basic tilted helix bundle domain BTHB PF18410.1 72 pCP014345_00041 - 93 0.086 12.7 1.5 3 3 0.0002 0.87 9.4 0.1 34 63 45 74 41 80 0.92 Basic tilted helix bundle domain HicB_lk_antitox PF15919.5 123 pCP014345_00043 - 120 8.6e-09 35.6 0.3 1 2 4.3e-06 0.039 14.1 0.0 1 60 13 75 13 80 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 pCP014345_00043 - 120 8.6e-09 35.6 0.3 2 2 4e-08 0.00036 20.7 0.1 88 123 78 109 73 109 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 pCP014345_00043 - 120 0.16 11.9 0.0 1 1 3.3e-05 0.3 11.0 0.0 3 35 81 113 80 116 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HicA_toxin PF07927.12 58 pCP014345_00044 - 75 1.7e-06 28.0 0.0 1 1 1.4e-10 2.5e-06 27.4 0.0 5 55 24 71 20 72 0.88 HicA toxin of bacterial toxin-antitoxin, Fic PF02661.18 97 pCP014345_00046 - 133 4.4e-05 24.3 0.0 1 1 8.9e-09 8e-05 23.5 0.0 23 97 6 76 2 76 0.72 Fic/DOC family Como_LCP PF02247.16 373 pCP014345_00046 - 133 0.056 12.0 0.1 1 1 7.2e-06 0.065 11.8 0.1 238 302 51 116 35 129 0.88 Large coat protein Pox_J1 PF03338.15 146 pCP014345_00047 - 220 0.0028 17.5 1.7 1 2 0.006 53 3.6 0.2 51 93 13 54 9 88 0.79 Poxvirus J1 protein Pox_J1 PF03338.15 146 pCP014345_00047 - 220 0.0028 17.5 1.7 2 2 1.1e-05 0.096 12.5 0.1 13 50 125 162 119 169 0.88 Poxvirus J1 protein DHHA1 PF02272.19 138 pCP014345_00047 - 220 0.85 10.0 3.4 1 1 0.00019 1.7 9.1 3.2 16 92 68 148 55 160 0.83 DHHA1 domain DUF3825 PF12873.7 239 pCP014345_00048 - 335 2.2e-28 99.3 0.4 1 1 1.9e-32 3.4e-28 98.7 0.4 1 239 106 330 106 330 0.86 Domain of unknown function (DUF3825) DUF447 PF04289.12 176 pCP014345_00049 - 130 0.029 14.1 0.1 1 1 7.7e-06 0.046 13.5 0.1 42 111 21 87 19 96 0.85 Protein of unknown function (DUF447) WH1 PF00568.23 111 pCP014345_00049 - 130 0.04 13.9 0.3 1 1 1e-05 0.063 13.2 0.3 9 80 28 98 20 106 0.84 WH1 domain Cob_adeno_trans PF01923.18 164 pCP014345_00049 - 130 0.045 13.9 0.1 1 1 9.9e-06 0.059 13.5 0.1 25 104 37 127 32 130 0.79 Cobalamin adenosyltransferase IMS_C PF11799.8 118 pCP014345_00051 - 127 0.00012 22.7 0.0 1 1 2.2e-08 0.00019 22.1 0.0 59 111 11 62 3 67 0.88 impB/mucB/samB family C-terminal domain Patched PF02460.18 811 pCP014345_00051 - 127 0.024 12.8 0.2 1 1 3.1e-06 0.027 12.5 0.2 3 75 52 122 50 126 0.91 Patched family IMS PF00817.20 150 pCP014345_00052 - 328 7.5e-25 87.7 1.9 1 2 1.5e-28 1.4e-24 86.8 0.2 1 149 10 192 10 193 0.86 impB/mucB/samB family IMS PF00817.20 150 pCP014345_00052 - 328 7.5e-25 87.7 1.9 2 2 0.21 1.9e+03 -1.2 0.1 55 84 295 324 284 327 0.72 impB/mucB/samB family IMS_HHH PF11798.8 32 pCP014345_00052 - 328 0.00023 21.3 0.1 1 2 0.95 8.5e+03 -2.5 0.0 3 12 18 28 16 30 0.56 IMS family HHH motif IMS_HHH PF11798.8 32 pCP014345_00052 - 328 0.00023 21.3 0.1 2 2 1.2e-07 0.0011 19.2 0.1 6 32 218 245 215 245 0.92 IMS family HHH motif CooC_C PF15976.5 93 pCP014345_00054 - 53 0.015 15.3 0.0 1 1 1.8e-06 0.016 15.2 0.0 12 46 5 39 1 43 0.89 CS1-pili formation C-terminal PemK_toxin PF02452.17 111 pCP014345_00054 - 53 0.04 14.3 0.0 1 1 5.3e-06 0.048 14.1 0.0 81 108 2 29 1 32 0.91 PemK-like, MazF-like toxin of type II toxin-antitoxin system HTH_3 PF01381.22 55 pCP014345_00055 - 44 3.7e-07 30.1 0.0 1 1 4.6e-10 4.1e-07 30.0 0.0 1 36 9 43 9 44 0.94 Helix-turn-helix HTH_26 PF13443.6 63 pCP014345_00055 - 44 0.00017 21.9 0.0 1 1 2.1e-07 0.00019 21.8 0.0 2 35 9 42 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 pCP014345_00055 - 44 0.00074 19.0 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 65 pCP014345_00055 - 44 0.0012 18.7 0.0 1 1 1.4e-06 0.0013 18.6 0.0 1 32 9 41 9 44 0.81 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_19 PF12844.7 65 pCP014345_00055 - 44 0.0012 18.8 0.0 1 1 1.5e-06 0.0013 18.7 0.0 4 37 9 42 7 44 0.90 Helix-turn-helix domain HTH_23 PF13384.6 50 pCP014345_00055 - 44 0.002 17.8 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 pCP014345_00055 - 44 0.0038 17.3 0.3 1 1 6e-06 0.0054 16.8 0.3 25 46 1 22 1 40 0.90 ENT domain HTH_31 PF13560.6 64 pCP014345_00055 - 44 0.0048 17.2 0.0 1 1 5.8e-06 0.0052 17.1 0.0 12 40 15 43 9 44 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 pCP014345_00055 - 44 0.0094 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 pCP014345_00055 - 44 0.0099 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 pCP014345_00055 - 44 0.013 14.8 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 pCP014345_00055 - 44 0.02 14.8 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 pCP014345_00055 - 44 0.021 14.6 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP014345_00055 - 44 0.028 14.5 0.0 1 1 3.5e-05 0.032 14.3 0.0 3 33 9 38 7 42 0.84 Bacteriophage CI repressor helix-turn-helix domain HTH_AsnC-type PF13404.6 42 pCP014345_00055 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 51 pCP014345_00055 - 44 0.031 14.5 0.0 1 2 0.02 18 5.6 0.0 4 16 9 21 9 25 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 pCP014345_00055 - 44 0.031 14.5 0.0 2 2 0.0034 3 8.1 0.0 6 28 22 43 19 44 0.83 Helix-turn-helix domain Sigma70_r4 PF04545.16 50 pCP014345_00055 - 44 0.035 13.6 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 MerR PF00376.23 38 pCP014345_00055 - 44 0.08 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 pCP014345_00055 - 44 0.08 12.7 0.0 2 2 0.0096 8.6 6.2 0.0 4 18 22 36 21 43 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 pCP014345_00055 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 pCP014345_00055 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain DUF5601 PF18151.1 65 pCP014345_00057 - 133 0.0084 16.4 0.4 1 1 1.8e-06 0.016 15.5 0.4 12 55 44 89 29 90 0.86 Domain of unknown function (DUF5601) IFP_35_N PF07334.13 76 pCP014345_00057 - 133 0.14 12.2 4.9 1 3 0.0049 44 4.2 0.0 57 72 5 20 3 23 0.89 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 pCP014345_00057 - 133 0.14 12.2 4.9 2 3 0.15 1.3e+03 -0.5 0.1 1 20 42 61 29 73 0.74 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 pCP014345_00057 - 133 0.14 12.2 4.9 3 3 0.00022 2 8.5 0.4 6 28 97 119 90 126 0.88 Interferon-induced 35 kDa protein (IFP 35) N-terminus Occludin_ELL PF07303.13 101 pCP014345_00060 - 115 0.0057 17.4 1.0 1 1 1.7e-06 0.0076 17.0 1.0 43 99 28 86 15 87 0.87 Occludin homology domain DUF2935 PF11155.8 122 pCP014345_00060 - 115 0.019 15.3 1.9 1 1 5.2e-06 0.023 15.0 1.9 26 118 20 113 12 115 0.78 Domain of unknown function (DUF2935) HAUS4 PF14735.6 235 pCP014345_00060 - 115 0.038 13.7 0.1 1 1 9.8e-06 0.044 13.5 0.1 51 130 26 107 7 112 0.88 HAUS augmin-like complex subunit 4 DUF2207 PF09972.9 492 pCP014345_00060 - 115 0.19 10.5 2.4 1 1 4.5e-05 0.2 10.4 2.4 319 390 10 97 2 113 0.62 Predicted membrane protein (DUF2207) Phage_NinH PF06322.11 60 pCP014345_00061 - 47 0.1 12.5 0.2 1 1 7e-06 0.13 12.2 0.2 36 56 26 46 21 47 0.90 Phage NinH protein YafQ_toxin PF15738.5 88 pCP014345_00065 - 106 1.6e-26 92.4 3.7 1 1 4.7e-30 2.1e-26 92.0 3.7 1 87 20 106 20 106 0.95 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 pCP014345_00065 - 106 1.9e-06 28.4 0.6 1 1 4.9e-10 2.2e-06 28.2 0.6 6 89 23 105 18 106 0.80 ParE toxin of type II toxin-antitoxin system, parDE Ribosomal_S2 PF00318.20 215 pCP014345_00065 - 106 0.0042 16.3 0.9 1 1 1.2e-06 0.0053 16.0 0.9 98 164 27 94 21 99 0.83 Ribosomal protein S2 ParE-like_toxin PF15781.5 87 pCP014345_00065 - 106 0.017 15.1 1.6 1 1 7.8e-06 0.035 14.1 1.6 5 82 26 105 22 106 0.79 ParE-like toxin of type II bacterial toxin-antitoxin system WGR PF05406.15 80 pCP014345_00070 - 75 4.2e-07 29.9 0.3 1 1 5.5e-11 4.9e-07 29.7 0.3 3 73 4 74 2 75 0.86 WGR domain Cadherin_pro PF08758.11 90 pCP014345_00070 - 75 0.035 14.3 0.0 1 1 4.8e-06 0.043 14.0 0.0 15 44 26 55 12 62 0.80 Cadherin prodomain like FlaC_arch PF05377.11 55 pCP014345_00071 - 76 0.0068 16.8 1.5 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pCP014345_00071 - 76 0.0068 16.8 1.5 2 2 3.8e-07 0.0068 16.8 1.5 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) Phage_integrase PF00589.22 172 pCP014345_00072 - 312 4.9e-24 85.0 0.5 1 1 3.2e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 pCP014345_00072 - 312 1.2e-05 25.5 4.2 1 2 1.5e-08 3.9e-05 23.9 1.8 1 79 16 99 16 102 0.92 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pCP014345_00072 - 312 1.2e-05 25.5 4.2 2 2 4 1e+04 -3.1 0.0 38 54 125 141 115 151 0.53 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP014345_00072 - 312 0.00017 21.8 4.6 1 3 6.8e-08 0.00017 21.8 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP014345_00072 - 312 0.00017 21.8 4.6 2 3 1.1 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP014345_00072 - 312 0.00017 21.8 4.6 3 3 2.1 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 85 pCP014345_00072 - 312 0.0026 18.2 8.9 1 3 0.00099 2.5 8.6 0.3 35 80 5 49 2 53 0.86 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pCP014345_00072 - 312 0.0026 18.2 8.9 2 3 3.4e-06 0.0086 16.5 5.3 2 79 16 101 15 104 0.90 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pCP014345_00072 - 312 0.0026 18.2 8.9 3 3 2 5.2e+03 -2.0 0.1 8 22 285 299 281 302 0.77 Phage integrase, N-terminal SAM-like domain Phyto-Amp PF15438.6 195 pCP014345_00072 - 312 0.0092 15.8 0.3 1 1 6.5e-06 0.017 15.0 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma Phage_int_SAM_3 PF14659.6 58 pCP014345_00072 - 312 0.027 14.7 3.2 1 1 4.2e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain YbjN PF10722.9 127 pCP014345_00072 - 312 0.029 14.4 0.3 1 2 0.00055 1.4 9.0 0.1 38 77 96 135 91 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 pCP014345_00072 - 312 0.029 14.4 0.3 2 2 0.047 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator Prok-TraM PF09228.10 102 pCP014345_00074 - 298 0.087 13.2 0.0 1 1 2e-05 0.18 12.2 0.0 13 93 35 115 24 120 0.89 Prokaryotic Transcriptional repressor TraM Flu_B_M2 PF04772.12 109 pCP014345_00074 - 298 2.3 8.5 10.7 1 3 2.5e-05 0.22 11.8 0.4 43 101 80 138 67 141 0.90 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 pCP014345_00074 - 298 2.3 8.5 10.7 2 3 0.013 1.1e+02 3.0 2.9 25 87 133 195 132 208 0.88 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 pCP014345_00074 - 298 2.3 8.5 10.7 3 3 0.27 2.4e+03 -1.2 0.0 74 104 236 266 228 270 0.67 Influenza B matrix protein 2 (BM2) TagA PF12561.8 99 pCP014345_00075 - 210 1.1 9.7 3.4 1 2 0.00094 17 5.9 0.7 31 90 68 127 55 133 0.81 ToxR activated gene A lipoprotein domain TagA PF12561.8 99 pCP014345_00075 - 210 1.1 9.7 3.4 2 2 0.0027 49 4.4 0.1 63 88 184 209 166 210 0.84 ToxR activated gene A lipoprotein domain DUF4299 PF14132.6 301 pCP014345_00076 - 116 3.2e-08 33.4 0.1 1 1 6.2e-12 3.7e-08 33.2 0.1 189 300 12 110 5 111 0.85 Domain of unknown function (DUF4299) A2M PF00207.22 92 pCP014345_00076 - 116 0.11 12.3 0.0 1 1 2.6e-05 0.16 11.9 0.0 17 56 49 89 36 94 0.81 Alpha-2-macroglobulin family XPG_I PF00867.18 94 pCP014345_00076 - 116 0.13 12.7 0.0 1 1 2.6e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region AHH PF14412.6 114 pCP014345_00078 - 259 5.3e-16 58.7 1.4 1 1 1.1e-19 9.6e-16 57.9 1.4 10 113 155 241 148 242 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH RRF PF01765.19 162 pCP014345_00078 - 259 0.12 12.3 4.7 1 2 1.8e-05 0.16 11.9 0.1 124 153 163 193 112 199 0.86 Ribosome recycling factor RRF PF01765.19 162 pCP014345_00078 - 259 0.12 12.3 4.7 2 2 0.025 2.3e+02 1.7 1.1 121 146 215 242 207 256 0.69 Ribosome recycling factor Glyco_hydro_59 PF02057.15 294 pCP014345_00080 - 287 0.022 14.0 1.2 1 1 2.4e-06 0.043 13.1 1.2 109 165 106 159 99 178 0.87 Glycosyl hydrolase family 59 Nucleoside_tran PF01733.18 309 pCP014345_00082 - 289 0.15 11.4 2.7 1 1 4.6e-05 0.28 10.5 2.7 71 192 10 129 3 134 0.66 Nucleoside transporter Turandot PF07240.11 81 pCP014345_00082 - 289 0.19 11.7 1.3 1 2 0.75 4.5e+03 -2.3 0.0 17 40 25 48 22 54 0.61 Stress-inducible humoral factor Turandot Turandot PF07240.11 81 pCP014345_00082 - 289 0.19 11.7 1.3 2 2 8e-05 0.48 10.4 0.6 2 28 247 273 246 288 0.77 Stress-inducible humoral factor Turandot Sigma70_ner PF04546.13 204 pCP014345_00082 - 289 0.2 11.5 6.4 1 2 0.03 1.8e+02 1.9 0.4 16 78 33 83 20 120 0.46 Sigma-70, non-essential region Sigma70_ner PF04546.13 204 pCP014345_00082 - 289 0.2 11.5 6.4 2 2 1.7e-05 0.1 12.4 1.0 88 125 238 276 228 285 0.90 Sigma-70, non-essential region Rapsyn_N PF10579.9 80 pCP014345_00084 - 358 0.53 10.4 3.8 1 3 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 pCP014345_00084 - 358 0.53 10.4 3.8 2 3 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 pCP014345_00084 - 358 0.53 10.4 3.8 3 3 0.24 4.3e+03 -2.1 0.1 19 34 340 355 329 356 0.74 Rapsyn N-terminal myristoylation and linker region DUF2768 PF10966.8 58 pCP014345_00085 - 114 0.0086 16.5 0.2 1 2 1.9e-06 0.0086 16.5 0.2 22 57 37 72 35 72 0.95 Protein of unknown function (DUF2768) DUF2768 PF10966.8 58 pCP014345_00085 - 114 0.0086 16.5 0.2 2 2 0.4 1.8e+03 -0.5 1.3 6 13 96 103 79 108 0.53 Protein of unknown function (DUF2768) DiS_P_DiS PF06750.13 84 pCP014345_00085 - 114 0.027 14.6 0.4 1 1 1.2e-05 0.054 13.6 0.4 29 73 6 50 2 59 0.84 Bacterial Peptidase A24 N-terminal domain DZR PF12773.7 49 pCP014345_00085 - 114 0.028 14.4 0.3 1 1 8.3e-06 0.037 14.0 0.3 13 37 5 38 2 45 0.88 Double zinc ribbon zinc_ribbon_4 PF13717.6 36 pCP014345_00085 - 114 0.14 12.1 4.3 1 2 0.072 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP014345_00085 - 114 0.14 12.1 4.3 2 2 3.5e-05 0.16 12.0 0.3 3 16 30 43 29 47 0.86 zinc-ribbon domain Myc-LZ PF02344.15 31 pCP014345_00086 - 34 0.045 13.9 0.4 1 1 3e-06 0.054 13.6 0.4 8 18 15 25 14 27 0.94 Myc leucine zipper domain Importin_rep PF18773.1 40 pCP014345_00087 - 260 0.018 14.7 0.1 1 1 6.7e-06 0.04 13.6 0.1 16 27 231 242 226 249 0.90 Importin 13 repeat DUF327 PF03885.13 143 pCP014345_00087 - 260 0.075 13.0 0.1 1 3 0.41 2.5e+03 -1.7 0.1 97 109 43 55 22 76 0.50 Protein of unknown function (DUF327) DUF327 PF03885.13 143 pCP014345_00087 - 260 0.075 13.0 0.1 2 3 0.96 5.7e+03 -2.8 0.0 22 24 140 142 116 165 0.49 Protein of unknown function (DUF327) DUF327 PF03885.13 143 pCP014345_00087 - 260 0.075 13.0 0.1 3 3 1.3e-05 0.075 13.0 0.1 48 85 217 254 191 258 0.89 Protein of unknown function (DUF327) BLOC1_2 PF10046.9 96 pCP014345_00087 - 260 0.94 9.8 4.4 1 3 2.1 1.2e+04 -3.4 0.1 38 61 48 71 47 73 0.65 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP014345_00087 - 260 0.94 9.8 4.4 2 3 4.3e-05 0.26 11.6 0.4 22 75 115 172 110 179 0.87 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP014345_00087 - 260 0.94 9.8 4.4 3 3 0.81 4.8e+03 -2.1 0.0 70 79 245 254 228 258 0.43 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GPD PF05954.11 304 pCP014345_00088 - 833 5.9e-18 65.2 0.0 1 1 1e-21 9.4e-18 64.5 0.0 22 281 73 360 45 376 0.76 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 pCP014345_00088 - 833 0.11 12.2 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 pCP014345_00088 - 833 0.11 12.2 0.0 2 2 0.00042 3.8 7.2 0.0 19 49 456 486 447 513 0.81 TCL1/MTCP1 family T6SS_TssG PF06996.11 299 pCP014345_00089 - 302 1.9e-47 161.9 0.0 1 1 1.2e-51 2.2e-47 161.8 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG T6SS_TssF PF05947.12 603 pCP014345_00090 - 573 1.6e-110 370.4 0.0 1 1 1e-114 1.8e-110 370.3 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF GPW_gp25 PF04965.14 95 pCP014345_00091 - 130 2.2e-09 36.9 0.0 1 1 4.8e-13 2.9e-09 36.6 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 pCP014345_00091 - 130 0.021 14.7 0.3 1 1 4.5e-06 0.027 14.3 0.3 94 159 21 87 5 92 0.87 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 pCP014345_00091 - 130 0.072 12.6 0.2 1 2 2.9e-05 0.17 11.3 0.1 82 121 5 46 1 64 0.84 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 pCP014345_00091 - 130 0.072 12.6 0.2 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 422 pCP014345_00092 - 484 6e-170 565.6 0.0 1 1 7.9e-174 7.1e-170 565.3 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 pCP014345_00092 - 484 0.33 11.0 2.6 1 4 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pCP014345_00092 - 484 0.33 11.0 2.6 2 4 1.5 1.4e+04 -3.9 0.0 103 117 130 143 127 147 0.66 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pCP014345_00092 - 484 0.33 11.0 2.6 3 4 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pCP014345_00092 - 484 0.33 11.0 2.6 4 4 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 155 pCP014345_00093 - 161 6.4e-52 175.5 3.9 1 1 8e-56 7.2e-52 175.3 3.9 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 pCP014345_00093 - 161 0.14 10.8 0.0 1 1 1.8e-05 0.16 10.5 0.0 171 227 55 111 40 127 0.90 Chitin synthase T6SS_VasJ PF16989.5 255 pCP014345_00094 - 415 2.9e-12 46.6 0.0 1 1 9.3e-16 4.2e-12 46.1 0.0 3 153 176 323 174 408 0.83 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 pCP014345_00094 - 415 0.00014 22.0 0.2 1 2 1.8e-07 0.0008 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 pCP014345_00094 - 415 0.00014 22.0 0.2 2 2 0.31 1.4e+03 -0.6 0.0 47 71 185 209 162 212 0.83 ImpA, N-terminal, type VI secretion system TetR_C_24 PF17932.1 114 pCP014345_00094 - 415 0.19 12.0 0.0 1 1 8.8e-05 0.4 11.0 0.0 20 68 71 119 62 132 0.87 Tetracyclin repressor-like, C-terminal domain PX PF00787.24 113 pCP014345_00094 - 415 0.28 11.2 14.0 1 3 0.00025 1.1 9.2 2.4 31 111 33 130 20 131 0.67 PX domain PX PF00787.24 113 pCP014345_00094 - 415 0.28 11.2 14.0 2 3 0.0042 19 5.3 0.1 16 111 155 274 132 276 0.64 PX domain PX PF00787.24 113 pCP014345_00094 - 415 0.28 11.2 14.0 3 3 0.052 2.3e+02 1.8 0.7 22 97 316 396 296 404 0.70 PX domain Phage_portal PF04860.12 314 pCP014569_00001 - 353 3.7e-29 101.9 0.1 1 1 5.4e-33 4.8e-29 101.5 0.1 27 314 60 348 45 348 0.85 Phage portal protein DUF3770 PF12603.8 235 pCP014569_00001 - 353 0.036 13.6 0.1 1 1 6.8e-06 0.061 12.8 0.1 70 141 148 219 135 238 0.83 Protein of unknown function (DUF3770) Terminase_6 PF03237.15 215 pCP014569_00002 - 577 8.4e-17 61.6 0.0 1 1 9e-20 1.6e-16 60.6 0.0 2 213 181 375 180 377 0.92 Terminase-like family Terminase_6C PF17289.2 155 pCP014569_00002 - 577 1.9e-07 31.3 0.0 1 1 2.6e-10 4.6e-07 30.1 0.0 25 154 431 562 396 563 0.85 Terminase RNaseH-like domain HTH_Tnp_1 PF01527.20 75 pCP014569_00002 - 577 1.4e-06 28.5 0.2 1 1 2.3e-09 4.1e-06 27.0 0.2 6 70 19 80 13 85 0.78 Transposase HTH_3 PF01381.22 55 pCP014569_00002 - 577 0.00044 20.2 0.0 1 4 1.9e-05 0.034 14.2 0.0 7 44 33 72 30 75 0.88 Helix-turn-helix HTH_3 PF01381.22 55 pCP014569_00002 - 577 0.00044 20.2 0.0 2 4 0.96 1.7e+03 -0.9 0.0 12 23 77 88 73 90 0.82 Helix-turn-helix HTH_3 PF01381.22 55 pCP014569_00002 - 577 0.00044 20.2 0.0 3 4 0.25 4.4e+02 1.0 0.0 24 37 121 135 120 138 0.76 Helix-turn-helix HTH_3 PF01381.22 55 pCP014569_00002 - 577 0.00044 20.2 0.0 4 4 5 9e+03 -3.2 0.0 40 52 223 235 221 236 0.81 Helix-turn-helix HTH_28 PF13518.6 52 pCP014569_00002 - 577 0.0027 17.8 0.0 1 1 3.6e-06 0.0064 16.6 0.0 1 34 24 57 24 64 0.94 Helix-turn-helix domain HTH_29 PF13551.6 63 pCP014569_00002 - 577 0.0043 17.0 0.0 1 1 6.2e-06 0.011 15.7 0.0 4 40 28 63 27 69 0.89 Winged helix-turn helix HTH_7 PF02796.15 45 pCP014569_00002 - 577 0.035 14.2 0.0 1 1 4.8e-05 0.086 12.9 0.0 12 38 26 52 19 55 0.88 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 50 pCP014569_00002 - 577 0.061 13.1 0.0 1 1 0.00012 0.22 11.4 0.0 12 43 30 61 25 65 0.83 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 52 pCP014569_00002 - 577 0.081 12.3 0.0 1 1 0.00011 0.19 11.1 0.0 12 48 20 56 19 60 0.89 Helix-turn-helix domain of transposase family ISL3 Stirrup PF09061.6 79 pCP014569_00002 - 577 0.11 12.7 0.0 1 2 0.0021 3.7 7.8 0.0 12 31 224 243 218 255 0.80 Stirrup Stirrup PF09061.6 79 pCP014569_00002 - 577 0.11 12.7 0.0 2 2 0.2 3.5e+02 1.5 0.0 11 33 350 372 339 383 0.76 Stirrup YajC PF02699.15 80 pCP014569_00004 - 36 0.044 13.7 0.0 1 1 5e-06 0.045 13.6 0.0 5 31 7 33 2 36 0.77 Preprotein translocase subunit FeoB_associated PF12669.7 44 pCP014569_00004 - 36 0.057 13.8 0.0 1 1 7.5e-06 0.068 13.6 0.0 2 27 5 30 4 32 0.89 FeoB-associated Cys-rich membrane protein Phage_Mu_F PF04233.14 112 pCP014569_00007 - 408 1.2e-05 26.0 0.0 1 1 5.9e-09 3.5e-05 24.5 0.0 44 111 181 277 124 278 0.71 Phage Mu protein F like protein SieB PF14163.6 147 pCP014569_00007 - 408 0.065 12.7 5.5 1 2 3.9e-06 0.023 14.2 2.0 55 132 8 86 5 98 0.87 Super-infection exclusion protein B SieB PF14163.6 147 pCP014569_00007 - 408 0.065 12.7 5.5 2 2 0.26 1.6e+03 -1.5 0.1 58 79 319 340 310 358 0.76 Super-infection exclusion protein B TFIID_NTD2 PF04494.15 130 pCP014569_00007 - 408 0.53 10.5 3.9 1 3 0.13 7.9e+02 0.3 0.1 104 128 22 46 3 66 0.78 WD40 associated region in TFIID subunit, NTD2 domain TFIID_NTD2 PF04494.15 130 pCP014569_00007 - 408 0.53 10.5 3.9 2 3 0.37 2.2e+03 -1.2 0.1 65 95 174 198 128 209 0.61 WD40 associated region in TFIID subunit, NTD2 domain TFIID_NTD2 PF04494.15 130 pCP014569_00007 - 408 0.53 10.5 3.9 3 3 0.00017 1 9.6 0.1 61 104 325 368 306 375 0.87 WD40 associated region in TFIID subunit, NTD2 domain Zn_Tnp_IS1595 PF12760.7 46 pCP014569_00008 - 61 0.0013 18.7 1.5 1 1 2.9e-07 0.0017 18.3 1.5 20 46 2 34 1 34 0.85 Transposase zinc-ribbon domain Elf1 PF05129.13 78 pCP014569_00008 - 61 0.0049 16.9 0.3 1 1 9.6e-07 0.0058 16.7 0.3 24 67 3 47 1 51 0.90 Transcription elongation factor Elf1 like Cys_rich_KTR PF14205.6 54 pCP014569_00008 - 61 0.097 12.5 5.1 1 1 2.7e-05 0.16 11.8 5.1 5 36 2 34 1 55 0.68 Cysteine-rich KTR DUF1018 PF06252.12 119 pCP014569_00009 - 145 0.02 15.8 0.1 1 1 2e-06 0.036 15.0 0.1 4 116 29 139 27 141 0.78 Protein of unknown function (DUF1018) OrfB_IS605 PF01385.19 120 pCP014569_00012 - 366 1.2e-24 86.8 0.2 1 2 0.18 8.1e+02 0.2 2.7 57 96 53 91 27 107 0.73 Probable transposase OrfB_IS605 PF01385.19 120 pCP014569_00012 - 366 1.2e-24 86.8 0.2 2 2 2.7e-28 1.2e-24 86.8 0.2 2 119 160 275 159 276 0.95 Probable transposase OrfB_Zn_ribbon PF07282.11 69 pCP014569_00012 - 366 3.3e-18 65.4 1.3 1 2 3.3 1.5e+04 -4.0 0.1 3 11 99 107 99 108 0.84 Putative transposase DNA-binding domain OrfB_Zn_ribbon PF07282.11 69 pCP014569_00012 - 366 3.3e-18 65.4 1.3 2 2 7.4e-22 3.3e-18 65.4 1.3 1 68 285 349 285 350 0.92 Putative transposase DNA-binding domain VPS28 PF03997.12 189 pCP014569_00012 - 366 0.051 13.3 0.4 1 3 1.1e-05 0.051 13.3 0.4 144 187 46 92 12 93 0.77 VPS28 protein VPS28 PF03997.12 189 pCP014569_00012 - 366 0.051 13.3 0.4 2 3 0.24 1.1e+03 -0.9 0.2 144 160 227 243 166 268 0.62 VPS28 protein VPS28 PF03997.12 189 pCP014569_00012 - 366 0.051 13.3 0.4 3 3 0.064 2.9e+02 1.0 0.2 113 167 238 290 233 310 0.75 VPS28 protein HTH_OrfB_IS605 PF12323.8 47 pCP014569_00012 - 366 0.072 12.6 0.2 1 1 4.5e-05 0.2 11.2 0.2 1 44 1 42 1 45 0.90 Helix-turn-helix domain Y1_Tnp PF01797.16 121 pCP014569_00013 - 151 1.5e-38 131.6 0.0 1 1 1.3e-42 2.3e-38 131.0 0.0 1 121 13 130 13 130 0.98 Transposase IS200 like DUF1353 PF07087.11 91 pCP014569_00014 - 117 1.3e-18 66.4 0.0 1 1 8.9e-23 1.6e-18 66.2 0.0 4 91 21 107 18 107 0.91 Protein of unknown function (DUF1353) ExsD PF16806.5 238 pCP014569_00015 - 356 0.0064 16.4 1.8 1 1 5.3e-06 0.0096 15.9 1.8 93 192 48 146 27 166 0.82 Antiactivator protein ExsD CBM_X2 PF03442.14 83 pCP014569_00015 - 356 0.032 14.3 1.5 1 2 0.00026 0.47 10.6 0.3 14 61 113 160 108 166 0.91 Carbohydrate binding domain X2 CBM_X2 PF03442.14 83 pCP014569_00015 - 356 0.032 14.3 1.5 2 2 0.13 2.3e+02 2.0 0.0 32 54 226 248 213 260 0.79 Carbohydrate binding domain X2 YlqD PF11068.8 131 pCP014569_00015 - 356 0.052 13.9 4.1 1 1 4.7e-05 0.084 13.2 4.1 17 83 43 117 27 140 0.82 YlqD protein HSBP1 PF06825.12 51 pCP014569_00015 - 356 0.065 13.1 0.4 1 2 0.00074 1.3 8.9 0.1 13 42 56 88 55 92 0.83 Heat shock factor binding protein 1 HSBP1 PF06825.12 51 pCP014569_00015 - 356 0.065 13.1 0.4 2 2 0.19 3.5e+02 1.2 0.0 28 40 127 139 104 142 0.78 Heat shock factor binding protein 1 Spc7 PF08317.11 310 pCP014569_00015 - 356 0.098 11.5 10.1 1 1 7.8e-05 0.14 11.0 10.1 140 239 39 138 31 160 0.79 Spc7 kinetochore protein DUF1465 PF07323.12 154 pCP014569_00015 - 356 0.11 12.4 1.1 1 1 0.0001 0.18 11.6 1.1 84 137 43 97 25 116 0.77 Protein of unknown function (DUF1465) DUF1664 PF07889.12 124 pCP014569_00015 - 356 0.28 11.2 4.1 1 1 0.00023 0.41 10.7 2.9 53 120 46 113 29 117 0.88 Protein of unknown function (DUF1664) DUF4455 PF14643.6 469 pCP014569_00015 - 356 0.69 8.5 8.7 1 2 0.03 54 2.3 3.5 24 92 21 87 18 93 0.85 Domain of unknown function (DUF4455) DUF4455 PF14643.6 469 pCP014569_00015 - 356 0.69 8.5 8.7 2 2 0.00027 0.48 9.0 0.2 18 74 98 156 91 160 0.85 Domain of unknown function (DUF4455) Atg14 PF10186.9 319 pCP014569_00015 - 356 0.79 8.7 7.5 1 1 0.0011 2 7.4 7.4 26 91 42 107 36 139 0.85 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4795 PF16043.5 204 pCP014569_00015 - 356 2.5 7.6 9.4 1 2 0.00086 1.5 8.3 6.2 13 68 35 99 19 103 0.84 Domain of unknown function (DUF4795) DUF4795 PF16043.5 204 pCP014569_00015 - 356 2.5 7.6 9.4 2 2 0.13 2.2e+02 1.3 0.2 12 55 95 139 92 153 0.82 Domain of unknown function (DUF4795) DivIC PF04977.15 80 pCP014569_00016 - 121 0.24 11.2 0.1 1 3 1.3e-05 0.24 11.2 0.1 3 54 7 58 5 64 0.92 Septum formation initiator DivIC PF04977.15 80 pCP014569_00016 - 121 0.24 11.2 0.1 2 3 0.07 1.3e+03 -0.7 0.3 36 42 68 74 58 92 0.51 Septum formation initiator DivIC PF04977.15 80 pCP014569_00016 - 121 0.24 11.2 0.1 3 3 0.0052 92 2.9 0.2 26 51 95 120 91 121 0.86 Septum formation initiator Phage_holin_3_3 PF16083.5 78 pCP014569_00018 - 116 1.2e-10 41.3 4.9 1 1 9.1e-15 1.6e-10 40.9 4.9 3 74 18 93 17 97 0.93 LydA holin phage, holin superfamily III PG_binding_3 PF09374.10 76 pCP014569_00019 - 184 2.5e-11 43.7 0.0 1 1 4.3e-15 3.9e-11 43.1 0.0 4 75 118 181 115 182 0.94 Predicted Peptidoglycan domain Glyco_hydro_108 PF05838.12 85 pCP014569_00019 - 184 5e-08 33.3 0.1 1 1 1e-11 9.4e-08 32.4 0.1 20 85 31 112 22 112 0.90 Glycosyl hydrolase 108 MethyltransfD12 PF02086.15 260 pCP014569_00020 - 253 1.3e-28 100.4 4.0 1 1 2.5e-32 2.2e-28 99.7 4.0 1 259 12 236 12 237 0.80 D12 class N6 adenine-specific DNA methyltransferase Zea_mays_MuDR PF05928.11 207 pCP014569_00020 - 253 0.055 13.1 0.1 1 1 9.6e-06 0.086 12.5 0.1 163 196 212 245 204 252 0.89 Zea mays MURB-like protein (MuDR) HTH_26 PF13443.6 63 pCP014569_00021 - 156 0.0001 22.7 0.1 1 3 0.21 3.9e+02 1.6 0.0 10 31 4 25 2 31 0.86 Cro/C1-type HTH DNA-binding domain HTH_26 PF13443.6 63 pCP014569_00021 - 156 0.0001 22.7 0.1 2 3 0.00037 0.66 10.4 0.0 15 40 63 88 61 105 0.86 Cro/C1-type HTH DNA-binding domain HTH_26 PF13443.6 63 pCP014569_00021 - 156 0.0001 22.7 0.1 3 3 0.0041 7.4 7.1 0.1 3 46 102 142 100 147 0.78 Cro/C1-type HTH DNA-binding domain HTH_28 PF13518.6 52 pCP014569_00021 - 156 0.0042 17.2 0.0 1 3 0.15 2.7e+02 1.8 0.0 18 34 10 26 3 27 0.85 Helix-turn-helix domain HTH_28 PF13518.6 52 pCP014569_00021 - 156 0.0042 17.2 0.0 2 3 0.00085 1.5 9.0 0.0 18 34 64 80 62 81 0.82 Helix-turn-helix domain HTH_28 PF13518.6 52 pCP014569_00021 - 156 0.0042 17.2 0.0 3 3 0.11 1.9e+02 2.3 0.0 16 34 112 132 98 137 0.75 Helix-turn-helix domain HTH_3 PF01381.22 55 pCP014569_00021 - 156 0.013 15.6 1.7 1 4 0.024 43 4.3 0.0 8 31 3 26 3 32 0.89 Helix-turn-helix HTH_3 PF01381.22 55 pCP014569_00021 - 156 0.013 15.6 1.7 2 4 0.0038 6.7 6.8 0.0 18 34 67 83 62 86 0.90 Helix-turn-helix HTH_3 PF01381.22 55 pCP014569_00021 - 156 0.013 15.6 1.7 3 4 0.19 3.3e+02 1.4 0.0 13 29 114 130 105 146 0.79 Helix-turn-helix HTH_3 PF01381.22 55 pCP014569_00021 - 156 0.013 15.6 1.7 4 4 2.2 3.9e+03 -2.0 0.0 8 16 144 152 139 153 0.72 Helix-turn-helix Phage_terminase PF10668.9 60 pCP014569_00021 - 156 0.015 15.3 0.5 1 3 0.0089 16 5.6 0.0 23 48 5 30 2 37 0.84 Phage terminase small subunit Phage_terminase PF10668.9 60 pCP014569_00021 - 156 0.015 15.3 0.5 2 3 0.3 5.4e+02 0.7 0.0 26 43 62 79 58 88 0.84 Phage terminase small subunit Phage_terminase PF10668.9 60 pCP014569_00021 - 156 0.015 15.3 0.5 3 3 0.01 19 5.4 0.2 22 44 110 132 97 141 0.85 Phage terminase small subunit DUF4004 PF13171.6 197 pCP014569_00021 - 156 0.021 15.1 3.4 1 3 0.0056 10 6.3 0.2 5 25 7 27 3 32 0.90 Protein of unknown function (DUF4004) DUF4004 PF13171.6 197 pCP014569_00021 - 156 0.021 15.1 3.4 2 3 0.0052 9.3 6.4 0.0 6 24 62 80 59 90 0.87 Protein of unknown function (DUF4004) DUF4004 PF13171.6 197 pCP014569_00021 - 156 0.021 15.1 3.4 3 3 0.18 3.1e+02 1.4 0.2 3 24 111 132 109 135 0.89 Protein of unknown function (DUF4004) DUF2862 PF11061.8 61 pCP014569_00021 - 156 0.053 13.4 0.1 1 2 0.0055 9.8 6.1 0.0 14 39 5 30 2 45 0.83 Protein of unknown function (DUF2862) DUF2862 PF11061.8 61 pCP014569_00021 - 156 0.053 13.4 0.1 2 2 0.015 27 4.7 0.0 9 34 106 131 100 138 0.90 Protein of unknown function (DUF2862) HTH_23 PF13384.6 50 pCP014569_00021 - 156 0.062 13.1 0.0 1 3 0.094 1.7e+02 2.2 0.0 17 39 4 26 1 29 0.88 Homeodomain-like domain HTH_23 PF13384.6 50 pCP014569_00021 - 156 0.062 13.1 0.0 2 3 0.013 24 4.9 0.0 21 39 62 80 59 84 0.87 Homeodomain-like domain HTH_23 PF13384.6 50 pCP014569_00021 - 156 0.062 13.1 0.0 3 3 0.11 2e+02 2.0 0.0 19 39 112 132 99 138 0.83 Homeodomain-like domain HTH_19 PF12844.7 65 pCP014569_00021 - 156 0.1 12.6 0.0 1 3 2.2 4e+03 -2.1 0.0 47 55 9 17 3 39 0.65 Helix-turn-helix domain HTH_19 PF12844.7 65 pCP014569_00021 - 156 0.1 12.6 0.0 2 3 0.00033 0.59 10.2 0.0 16 49 62 104 61 128 0.75 Helix-turn-helix domain HTH_19 PF12844.7 65 pCP014569_00021 - 156 0.1 12.6 0.0 3 3 2.4 4.3e+03 -2.2 0.0 12 20 145 153 143 153 0.81 Helix-turn-helix domain AviRa PF11599.8 234 pCP014569_00021 - 156 0.11 12.0 0.0 1 2 0.0022 4 6.8 0.0 171 197 13 41 7 49 0.78 RRNA methyltransferase AviRa AviRa PF11599.8 234 pCP014569_00021 - 156 0.11 12.0 0.0 2 2 0.027 49 3.3 0.0 155 197 102 146 84 151 0.67 RRNA methyltransferase AviRa YcxB PF14317.6 61 pCP014569_00021 - 156 0.16 11.7 2.8 1 2 0.018 33 4.3 0.4 13 31 12 30 4 47 0.82 YcxB-like protein YcxB PF14317.6 61 pCP014569_00021 - 156 0.16 11.7 2.8 2 2 0.0023 4.1 7.2 0.1 3 30 108 135 107 142 0.90 YcxB-like protein DUF2569 PF10754.9 143 pCP014569_00024 - 128 0.026 15.0 0.4 1 1 7e-06 0.042 14.3 0.4 11 98 7 95 5 121 0.70 Protein of unknown function (DUF2569) PMT_4TMC PF16192.5 199 pCP014569_00024 - 128 0.06 12.9 0.3 1 1 1.4e-05 0.083 12.5 0.3 128 181 50 103 46 119 0.87 C-terminal four TMM region of protein-O-mannosyltransferase NiFe_hyd_3_EhaA PF17367.2 97 pCP014569_00024 - 128 0.14 12.3 3.0 1 2 0.64 3.8e+03 -1.9 0.0 47 60 5 18 2 30 0.75 NiFe-hydrogenase-type-3 Eha complex subunit A NiFe_hyd_3_EhaA PF17367.2 97 pCP014569_00024 - 128 0.14 12.3 3.0 2 2 1.7e-05 0.1 12.8 1.1 41 94 46 99 39 108 0.79 NiFe-hydrogenase-type-3 Eha complex subunit A SHE3 PF17078.5 228 pCP014569_00025 - 108 0.0065 16.2 10.7 1 1 3e-06 0.0078 16.0 10.7 153 221 35 103 26 107 0.88 SWI5-dependent HO expression protein 3 F420_oxidored PF03807.17 97 pCP014569_00025 - 108 0.009 16.6 0.5 1 1 4.3e-06 0.011 16.3 0.5 16 82 40 105 27 108 0.84 NADP oxidoreductase coenzyme F420-dependent SKIP_SNW PF02731.15 160 pCP014569_00025 - 108 0.031 13.9 2.1 1 1 1.7e-05 0.042 13.5 2.1 81 151 15 84 13 88 0.93 SKIP/SNW domain EutB PF06751.11 435 pCP014569_00025 - 108 0.037 12.8 0.6 1 1 1.5e-05 0.039 12.8 0.6 70 137 34 101 9 107 0.82 Ethanolamine ammonia lyase large subunit (EutB) FB_lectin PF07367.11 140 pCP014569_00025 - 108 0.072 13.0 0.3 1 1 3.7e-05 0.094 12.7 0.3 73 136 19 82 9 85 0.83 Fungal fruit body lectin MCC-bdg_PDZ PF10506.9 65 pCP014569_00025 - 108 0.13 12.3 6.4 1 2 0.17 4.3e+02 1.0 0.1 10 25 43 58 36 59 0.80 PDZ domain of MCC-2 bdg protein for Usher syndrome MCC-bdg_PDZ PF10506.9 65 pCP014569_00025 - 108 0.13 12.3 6.4 2 2 3e-05 0.078 13.0 3.1 3 38 57 95 56 101 0.93 PDZ domain of MCC-2 bdg protein for Usher syndrome DUF737 PF05300.11 201 pCP014569_00025 - 108 0.35 11.2 6.5 1 1 0.00017 0.43 10.9 6.5 117 173 28 83 24 94 0.89 Protein of unknown function (DUF737) COX8 PF02285.15 43 pCP014569_00027 - 246 0.016 15.1 0.0 1 1 2e-06 0.036 13.9 0.0 4 39 85 120 82 120 0.91 Cytochrome oxidase c subunit VIII O-antigen_lig PF13425.6 468 pCP014569_00028 - 195 0.0041 16.0 3.8 1 1 1e-06 0.0059 15.4 3.8 240 346 10 157 3 168 0.65 O-antigen ligase like membrane protein Insulin_TMD PF17870.1 47 pCP014569_00028 - 195 0.035 14.2 1.3 1 2 5.9e-06 0.035 14.2 1.3 9 31 12 34 6 37 0.83 Insulin receptor trans-membrane segment Insulin_TMD PF17870.1 47 pCP014569_00028 - 195 0.035 14.2 1.3 2 2 1.5 9.1e+03 -3.2 0.0 9 18 114 123 111 123 0.79 Insulin receptor trans-membrane segment TMEM51 PF15345.6 238 pCP014569_00028 - 195 0.079 12.8 0.1 1 1 2.1e-05 0.13 12.1 0.1 62 127 17 81 5 130 0.73 Transmembrane protein 51 RRXRR PF14239.6 174 pCP014569_00031 - 439 1.5e-55 187.8 5.1 1 1 4.5e-59 2e-55 187.3 5.1 1 174 2 177 2 177 0.98 RRXRR protein HNH_5 PF14279.6 56 pCP014569_00031 - 439 4e-12 45.8 1.5 1 1 1.6e-15 7.1e-12 45.0 1.5 1 44 196 235 196 245 0.89 HNH endonuclease HNH PF01844.23 47 pCP014569_00031 - 439 4.7e-09 36.3 3.1 1 1 2e-12 9e-09 35.4 3.1 1 44 196 234 196 236 0.93 HNH endonuclease HNH_4 PF13395.6 55 pCP014569_00031 - 439 8.2e-09 35.2 0.1 1 1 5.3e-12 2.4e-08 33.8 0.1 16 50 201 235 186 238 0.82 HNH endonuclease DUF325 PF03804.13 73 pCP014569_00032 - 309 0.17 11.9 0.9 1 2 2e-05 0.36 10.9 0.3 30 73 83 125 77 125 0.93 Viral proteins of unknown function DUF325 PF03804.13 73 pCP014569_00032 - 309 0.17 11.9 0.9 2 2 0.42 7.6e+03 -3.0 0.0 32 43 174 185 163 192 0.67 Viral proteins of unknown function Yae1_N PF09811.9 39 pCP014569_00033 - 211 0.41 10.4 1.9 1 2 3.3e-05 0.6 9.9 0.7 1 23 32 54 30 60 0.83 Essential protein Yae1, N terminal Yae1_N PF09811.9 39 pCP014569_00033 - 211 0.41 10.4 1.9 2 2 0.13 2.3e+03 -1.6 0.0 30 37 66 73 64 75 0.75 Essential protein Yae1, N terminal DUF1411 PF07199.11 194 pCP014569_00034 - 386 0.2 11.3 8.9 1 2 1.3e-06 0.024 14.3 4.5 28 168 131 272 125 286 0.76 Protein of unknown function (DUF1411) DUF1411 PF07199.11 194 pCP014569_00034 - 386 0.2 11.3 8.9 2 2 0.18 3.3e+03 -2.4 0.1 68 95 342 373 311 379 0.51 Protein of unknown function (DUF1411) HdeA PF06411.11 92 pCP014569_00035 - 143 0.057 13.6 0.2 1 1 4.8e-06 0.087 13.0 0.2 13 75 24 86 20 92 0.78 HdeA/HdeB family FAM76 PF16046.5 300 pCP014569_00037 - 239 0.24 10.7 30.5 1 2 0.0082 37 3.5 1.6 257 298 19 60 9 62 0.88 FAM76 protein FAM76 PF16046.5 300 pCP014569_00037 - 239 0.24 10.7 30.5 2 2 1.5e-05 0.067 12.5 21.6 177 292 99 212 61 222 0.59 FAM76 protein UCH PF00443.29 257 pCP014569_00037 - 239 0.42 10.1 17.0 1 2 5.8e-06 0.026 14.0 2.2 73 129 10 67 2 91 0.77 Ubiquitin carboxyl-terminal hydrolase UCH PF00443.29 257 pCP014569_00037 - 239 0.42 10.1 17.0 2 2 0.058 2.6e+02 0.9 7.4 100 136 102 142 74 200 0.76 Ubiquitin carboxyl-terminal hydrolase DUF4806 PF16064.5 90 pCP014569_00037 - 239 0.55 10.6 10.9 1 2 5.4e-05 0.24 11.7 1.1 7 49 14 57 9 73 0.83 Domain of unknown function (DUF4806) DUF4806 PF16064.5 90 pCP014569_00037 - 239 0.55 10.6 10.9 2 2 0.0094 42 4.5 1.1 13 39 168 194 160 204 0.81 Domain of unknown function (DUF4806) DUF4665 PF15679.5 99 pCP014569_00037 - 239 2.5 8.7 34.7 1 3 0.00023 1 10.0 5.6 35 76 21 62 14 84 0.81 Domain of unknown function (DUF4665) DUF4665 PF15679.5 99 pCP014569_00037 - 239 2.5 8.7 34.7 2 3 0.0043 19 5.9 6.6 37 97 88 150 74 152 0.77 Domain of unknown function (DUF4665) DUF4665 PF15679.5 99 pCP014569_00037 - 239 2.5 8.7 34.7 3 3 0.026 1.2e+02 3.4 8.0 36 86 153 202 149 214 0.83 Domain of unknown function (DUF4665) Chlorosome_CsmC PF11098.8 139 pCP014569_00038 - 161 0.0041 17.1 0.0 1 1 3.8e-06 0.0052 16.8 0.0 70 118 34 82 25 118 0.91 Chlorosome envelope protein C Tup_N PF08581.10 77 pCP014569_00038 - 161 0.017 15.4 1.7 1 2 1.2e-05 0.017 15.4 1.7 28 61 22 55 11 66 0.89 Tup N-terminal Tup_N PF08581.10 77 pCP014569_00038 - 161 0.017 15.4 1.7 2 2 0.85 1.2e+03 -0.1 4.6 27 67 90 98 58 124 0.47 Tup N-terminal CBP_BcsR PF10945.8 42 pCP014569_00038 - 161 0.031 13.7 0.3 1 1 4.8e-05 0.067 12.7 0.3 2 27 32 57 31 58 0.93 Cellulose biosynthesis protein BcsR Spectrin_like PF18373.1 78 pCP014569_00038 - 161 0.033 14.3 3.6 1 3 0.22 3.1e+02 1.5 0.0 25 42 13 30 10 37 0.82 Spectrin like domain Spectrin_like PF18373.1 78 pCP014569_00038 - 161 0.033 14.3 3.6 2 3 0.00017 0.23 11.6 0.3 31 49 40 58 36 84 0.86 Spectrin like domain Spectrin_like PF18373.1 78 pCP014569_00038 - 161 0.033 14.3 3.6 3 3 0.54 7.4e+02 0.3 0.1 26 36 90 100 61 115 0.69 Spectrin like domain APG6_N PF17675.1 133 pCP014569_00038 - 161 0.042 14.4 6.1 1 2 0.00021 0.28 11.7 0.6 52 115 3 66 1 84 0.90 Apg6 coiled-coil region APG6_N PF17675.1 133 pCP014569_00038 - 161 0.042 14.4 6.1 2 2 0.014 19 5.8 0.7 19 59 84 119 78 124 0.83 Apg6 coiled-coil region TMPIT PF07851.13 324 pCP014569_00038 - 161 0.059 12.6 6.3 1 2 7e-05 0.097 11.9 2.1 27 88 16 77 1 86 0.83 TMPIT-like protein TMPIT PF07851.13 324 pCP014569_00038 - 161 0.059 12.6 6.3 2 2 0.03 41 3.3 0.2 49 102 93 143 77 153 0.68 TMPIT-like protein DUF948 PF06103.11 89 pCP014569_00038 - 161 0.099 12.9 2.4 1 2 0.00018 0.25 11.6 0.5 18 79 18 76 15 85 0.85 Bacterial protein of unknown function (DUF948) DUF948 PF06103.11 89 pCP014569_00038 - 161 0.099 12.9 2.4 2 2 0.022 30 4.9 0.3 21 75 64 117 63 125 0.84 Bacterial protein of unknown function (DUF948) PSD3 PF07626.11 65 pCP014569_00038 - 161 0.14 12.7 0.1 1 1 0.00016 0.23 12.0 0.1 5 38 90 124 89 130 0.75 Protein of unknown function (DUF1587) SKA2 PF16740.5 110 pCP014569_00038 - 161 0.25 11.1 7.9 1 1 0.00051 0.71 9.7 6.6 4 93 21 116 18 132 0.78 Spindle and kinetochore-associated protein 2 NPV_P10 PF05531.12 75 pCP014569_00038 - 161 0.53 10.8 6.0 1 1 0.0085 12 6.5 6.1 10 63 32 83 28 125 0.85 Nucleopolyhedrovirus P10 protein FliD_N PF02465.18 97 pCP014569_00038 - 161 0.55 11.0 3.8 1 2 0.0093 13 6.6 0.2 22 58 20 57 5 86 0.77 Flagellar hook-associated protein 2 N-terminus FliD_N PF02465.18 97 pCP014569_00038 - 161 0.55 11.0 3.8 2 2 0.019 26 5.6 0.4 6 40 94 129 90 136 0.84 Flagellar hook-associated protein 2 N-terminus DUF2203 PF09969.9 122 pCP014569_00038 - 161 1.2 9.9 4.2 1 2 0.08 1.1e+02 3.5 0.1 48 80 21 53 4 58 0.69 Uncharacterized conserved protein (DUF2203) DUF2203 PF09969.9 122 pCP014569_00038 - 161 1.2 9.9 4.2 2 2 0.0073 10 6.9 1.0 16 67 61 117 58 124 0.60 Uncharacterized conserved protein (DUF2203) ZapB PF06005.12 71 pCP014569_00038 - 161 2.7 8.5 8.5 1 2 0.0061 8.5 6.9 8.2 3 67 18 102 16 119 0.93 Cell division protein ZapB ZapB PF06005.12 71 pCP014569_00038 - 161 2.7 8.5 8.5 2 2 1.6 2.3e+03 -0.9 0.2 41 49 109 117 102 127 0.56 Cell division protein ZapB Phasin PF05597.11 126 pCP014569_00039 - 208 0.17 11.9 9.3 1 3 1.3 3.2e+03 -1.9 0.0 79 96 20 41 4 66 0.64 Poly(hydroxyalcanoate) granule associated protein (phasin) Phasin PF05597.11 126 pCP014569_00039 - 208 0.17 11.9 9.3 2 3 0.00027 0.68 9.9 1.9 52 107 88 143 76 148 0.82 Poly(hydroxyalcanoate) granule associated protein (phasin) Phasin PF05597.11 126 pCP014569_00039 - 208 0.17 11.9 9.3 3 3 0.0039 9.9 6.2 0.2 53 94 158 199 147 205 0.79 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF948 PF06103.11 89 pCP014569_00039 - 208 0.47 10.7 5.0 1 2 0.023 58 4.0 0.2 46 69 92 115 55 139 0.60 Bacterial protein of unknown function (DUF948) DUF948 PF06103.11 89 pCP014569_00039 - 208 0.47 10.7 5.0 2 2 0.0011 2.7 8.3 0.8 46 87 161 207 155 208 0.60 Bacterial protein of unknown function (DUF948) DUF883 PF05957.13 94 pCP014569_00039 - 208 0.47 11.1 2.2 1 2 0.066 1.7e+02 2.9 0.3 21 50 98 127 79 141 0.56 Bacterial protein of unknown function (DUF883) DUF883 PF05957.13 94 pCP014569_00039 - 208 0.47 11.1 2.2 2 2 0.0026 6.7 7.4 0.1 4 64 161 199 140 207 0.51 Bacterial protein of unknown function (DUF883) MutS_III PF05192.18 191 pCP014569_00039 - 208 0.56 10.4 5.4 1 1 0.00025 0.64 10.2 5.4 74 178 57 204 6 208 0.58 MutS domain III Bravo_FIGEY PF13882.6 88 pCP014569_00039 - 208 1.2 10.5 7.1 1 2 3.4 8.6e+03 -1.8 0.0 49 64 34 49 13 56 0.64 Bravo-like intracellular region Bravo_FIGEY PF13882.6 88 pCP014569_00039 - 208 1.2 10.5 7.1 2 2 0.00024 0.61 11.5 4.1 12 77 88 157 82 159 0.78 Bravo-like intracellular region YtxH PF12732.7 75 pCP014569_00039 - 208 2.5 8.7 21.0 1 3 0.28 7.3e+02 0.8 0.2 29 58 17 46 5 66 0.67 YtxH-like protein YtxH PF12732.7 75 pCP014569_00039 - 208 2.5 8.7 21.0 2 3 0.04 1e+02 3.5 5.6 24 70 89 135 86 142 0.75 YtxH-like protein YtxH PF12732.7 75 pCP014569_00039 - 208 2.5 8.7 21.0 3 3 4.1e-05 0.11 13.1 2.6 29 64 166 205 158 208 0.51 YtxH-like protein HEPN_RES_NTD1 PF18870.1 129 pCP014569_00039 - 208 4.2 7.6 8.3 1 3 0.72 1.8e+03 -1.0 0.1 98 114 13 29 6 44 0.79 HEPN/RES N-terminal domain 1 HEPN_RES_NTD1 PF18870.1 129 pCP014569_00039 - 208 4.2 7.6 8.3 2 3 0.0029 7.5 6.8 0.4 53 104 82 133 56 135 0.84 HEPN/RES N-terminal domain 1 HEPN_RES_NTD1 PF18870.1 129 pCP014569_00039 - 208 4.2 7.6 8.3 3 3 0.0069 18 5.6 0.3 44 85 138 183 121 196 0.78 HEPN/RES N-terminal domain 1 SLT PF01464.20 117 pCP014569_00040 - 184 8.9e-12 44.7 0.0 1 1 2.4e-15 1.4e-11 44.0 0.0 2 101 26 166 25 178 0.92 Transglycosylase SLT domain Leukocidin PF07968.12 255 pCP014569_00040 - 184 0.00012 22.1 0.2 1 1 3.4e-08 0.0002 21.3 0.2 165 232 26 89 16 111 0.77 Leukocidin/Hemolysin toxin family Glucosaminidase PF01832.20 87 pCP014569_00040 - 184 0.2 12.2 2.1 1 1 4.5e-05 0.27 11.8 2.1 2 41 25 66 24 179 0.72 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AAA_22 PF13401.6 137 pCP014569_00041 - 781 0.14 12.4 0.0 1 2 0.00038 6.7 7.0 0.0 6 28 373 395 369 407 0.88 AAA domain AAA_22 PF13401.6 137 pCP014569_00041 - 781 0.14 12.4 0.0 2 2 0.013 2.4e+02 1.9 0.0 80 112 676 710 645 727 0.70 AAA domain DUF226 PF02890.14 139 pCP014569_00042 - 620 0.017 15.1 0.9 1 3 0.16 2.9e+03 -1.8 0.1 81 106 13 38 5 48 0.63 Borrelia family of unknown function DUF226 DUF226 PF02890.14 139 pCP014569_00042 - 620 0.017 15.1 0.9 2 3 9.4e-07 0.017 15.1 0.9 13 126 62 180 56 188 0.76 Borrelia family of unknown function DUF226 DUF226 PF02890.14 139 pCP014569_00042 - 620 0.017 15.1 0.9 3 3 0.15 2.6e+03 -1.7 0.6 16 39 249 272 237 314 0.60 Borrelia family of unknown function DUF226 Y1_Tnp PF01797.16 121 pCP014569_00043 - 151 1.5e-38 131.6 0.0 1 1 1.3e-42 2.3e-38 131.0 0.0 1 121 13 130 13 130 0.98 Transposase IS200 like OrfB_IS605 PF01385.19 120 pCP014569_00044 - 366 1.2e-24 86.8 0.2 1 2 0.18 8.1e+02 0.2 2.7 57 96 53 91 27 107 0.73 Probable transposase OrfB_IS605 PF01385.19 120 pCP014569_00044 - 366 1.2e-24 86.8 0.2 2 2 2.7e-28 1.2e-24 86.8 0.2 2 119 160 275 159 276 0.95 Probable transposase OrfB_Zn_ribbon PF07282.11 69 pCP014569_00044 - 366 3.3e-18 65.4 1.3 1 2 3.3 1.5e+04 -4.0 0.1 3 11 99 107 99 108 0.84 Putative transposase DNA-binding domain OrfB_Zn_ribbon PF07282.11 69 pCP014569_00044 - 366 3.3e-18 65.4 1.3 2 2 7.4e-22 3.3e-18 65.4 1.3 1 68 285 349 285 350 0.92 Putative transposase DNA-binding domain VPS28 PF03997.12 189 pCP014569_00044 - 366 0.051 13.3 0.4 1 3 1.1e-05 0.051 13.3 0.4 144 187 46 92 12 93 0.77 VPS28 protein VPS28 PF03997.12 189 pCP014569_00044 - 366 0.051 13.3 0.4 2 3 0.24 1.1e+03 -0.9 0.2 144 160 227 243 166 268 0.62 VPS28 protein VPS28 PF03997.12 189 pCP014569_00044 - 366 0.051 13.3 0.4 3 3 0.064 2.9e+02 1.0 0.2 113 167 238 290 233 310 0.75 VPS28 protein HTH_OrfB_IS605 PF12323.8 47 pCP014569_00044 - 366 0.073 12.6 0.2 1 1 4.5e-05 0.2 11.2 0.2 1 44 1 42 1 45 0.90 Helix-turn-helix domain CshA_NR2 PF18651.1 330 pCP014569_00046 - 297 0.099 11.8 0.2 1 2 0.094 1.7e+03 -2.1 0.1 43 87 39 81 35 111 0.60 Surface adhesin CshA non-repetitive domain 2 CshA_NR2 PF18651.1 330 pCP014569_00046 - 297 0.099 11.8 0.2 2 2 1.4e-05 0.24 10.5 0.0 235 284 174 226 162 233 0.82 Surface adhesin CshA non-repetitive domain 2 DUF3603 PF12227.8 214 pCP014569_00048 - 156 0.3 10.4 3.1 1 2 1.5e-05 0.27 10.5 1.2 131 186 7 62 1 73 0.91 Protein of unknown function (DUF3603) DUF3603 PF12227.8 214 pCP014569_00048 - 156 0.3 10.4 3.1 2 2 0.049 8.8e+02 -1.0 0.0 75 114 107 146 99 152 0.82 Protein of unknown function (DUF3603) DUF2357 PF09823.9 251 pCP014569_00049 - 251 0.098 11.9 0.0 1 1 1.4e-05 0.12 11.6 0.0 113 186 45 117 9 153 0.73 Domain of unknown function (DUF2357) ThylakoidFormat PF11264.8 216 pCP014569_00049 - 251 0.24 11.0 2.1 1 1 0.0002 1.8 8.2 2.1 152 192 107 147 38 161 0.91 Thylakoid formation protein DUF4214 PF13946.6 72 pCP014569_00051 - 1765 0.0004 20.4 4.0 1 4 0.29 5.1e+03 -2.4 0.0 7 22 705 719 701 725 0.78 Domain of unknown function (DUF4214) DUF4214 PF13946.6 72 pCP014569_00051 - 1765 0.0004 20.4 4.0 2 4 0.61 1.1e+04 -3.4 0.0 20 31 1268 1279 1257 1281 0.59 Domain of unknown function (DUF4214) DUF4214 PF13946.6 72 pCP014569_00051 - 1765 0.0004 20.4 4.0 3 4 2.4e-08 0.00042 20.3 0.1 24 57 1611 1644 1592 1651 0.86 Domain of unknown function (DUF4214) DUF4214 PF13946.6 72 pCP014569_00051 - 1765 0.0004 20.4 4.0 4 4 0.36 6.5e+03 -2.7 0.1 46 64 1721 1739 1720 1744 0.84 Domain of unknown function (DUF4214) DUF3784 PF12650.7 94 pCP014569_00052 - 64 0.0045 17.2 0.7 1 1 8.1e-07 0.0048 17.1 0.7 45 89 10 54 3 59 0.90 Domain of unknown function (DUF3784) TMCCDC2 PF15844.5 171 pCP014569_00052 - 64 0.021 14.7 0.7 1 1 3.6e-06 0.021 14.7 0.7 44 85 12 54 4 64 0.78 Transmembrane and coiled-coil domain-containing protein 2 DUF1240 PF06836.12 95 pCP014569_00052 - 64 0.052 14.1 1.8 1 2 0.099 5.9e+02 1.1 0.2 44 64 16 36 3 38 0.46 Protein of unknown function (DUF1240) DUF1240 PF06836.12 95 pCP014569_00052 - 64 0.052 14.1 1.8 2 2 2.2e-05 0.13 12.8 1.8 47 74 34 61 11 63 0.86 Protein of unknown function (DUF1240) DUF2321 PF10083.9 156 pCP014569_00053 - 71 0.05 13.2 0.1 1 1 2.9e-06 0.053 13.2 0.1 64 94 40 70 24 71 0.83 Uncharacterized protein conserved in bacteria (DUF2321) Phage_cap_P2 PF05125.12 326 pCP014569_00058 - 311 9.9e-08 31.3 2.5 1 1 2.2e-10 2e-06 27.0 2.5 15 210 15 198 4 290 0.69 Phage major capsid protein, P2 family Tctex-1 PF03645.13 103 pCP014569_00058 - 311 0.014 15.7 1.3 1 2 1.5e-05 0.14 12.4 0.0 31 100 64 131 11 133 0.80 Tctex-1 family Tctex-1 PF03645.13 103 pCP014569_00058 - 311 0.014 15.7 1.3 2 2 0.079 7e+02 0.5 0.2 21 43 165 187 144 206 0.76 Tctex-1 family Peptidase_S78_2 PF14550.6 120 pCP014569_00059 - 245 7.4e-34 116.4 0.1 1 1 4e-37 1.2e-33 115.8 0.1 3 119 40 156 38 157 0.92 Putative phage serine protease XkdF Holin_BhlA PF10960.8 70 pCP014569_00059 - 245 0.026 14.5 1.7 1 1 2e-05 0.061 13.3 1.7 33 70 183 223 172 223 0.82 BhlA holin family Abi_C PF14355.6 83 pCP014569_00059 - 245 0.059 13.5 0.7 1 3 0.67 2e+03 -1.0 0.0 13 43 57 86 54 87 0.78 Abortive infection C-terminus Abi_C PF14355.6 83 pCP014569_00059 - 245 0.059 13.5 0.7 2 3 0.0042 13 6.0 0.0 9 43 145 177 138 181 0.81 Abortive infection C-terminus Abi_C PF14355.6 83 pCP014569_00059 - 245 0.059 13.5 0.7 3 3 0.017 50 4.1 0.1 22 45 188 211 178 224 0.86 Abortive infection C-terminus DUF2203 PF09969.9 122 pCP014569_00059 - 245 0.26 12.0 1.8 1 2 1.2 3.7e+03 -1.4 0.0 65 84 143 162 119 185 0.62 Uncharacterized conserved protein (DUF2203) DUF2203 PF09969.9 122 pCP014569_00059 - 245 0.26 12.0 1.8 2 2 0.00016 0.46 11.2 0.5 6 47 195 236 192 242 0.84 Uncharacterized conserved protein (DUF2203) DUF4391 PF14335.6 242 pCP014569_00059 - 245 0.29 10.8 5.2 1 2 0.2 6e+02 -0.1 0.0 107 161 37 92 25 97 0.66 Domain of unknown function (DUF4391) DUF4391 PF14335.6 242 pCP014569_00059 - 245 0.29 10.8 5.2 2 2 0.00022 0.66 9.6 3.7 195 226 201 232 178 237 0.91 Domain of unknown function (DUF4391) SPT16 PF08644.11 151 pCP014569_00059 - 245 0.58 10.3 3.5 1 2 0.18 5.4e+02 0.7 0.1 86 93 39 46 12 105 0.58 FACT complex subunit (SPT16/CDC68) SPT16 PF08644.11 151 pCP014569_00059 - 245 0.58 10.3 3.5 2 2 0.00029 0.87 9.8 0.8 49 106 180 237 131 244 0.84 FACT complex subunit (SPT16/CDC68) Prok-TraM PF09228.10 102 pCP014743_00001 - 298 0.085 13.2 0.0 1 1 2e-05 0.18 12.2 0.0 13 93 35 115 24 120 0.89 Prokaryotic Transcriptional repressor TraM Flu_B_M2 PF04772.12 109 pCP014743_00001 - 298 3 8.1 11.1 1 3 2e-05 0.18 12.0 0.3 43 102 80 139 62 142 0.90 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 pCP014743_00001 - 298 3 8.1 11.1 2 3 0.017 1.5e+02 2.6 2.9 26 87 134 195 133 210 0.87 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 pCP014743_00001 - 298 3 8.1 11.1 3 3 0.26 2.3e+03 -1.2 0.0 73 104 235 266 227 270 0.68 Influenza B matrix protein 2 (BM2) TagA PF12561.8 99 pCP014743_00002 - 210 1.1 9.7 3.4 1 2 0.00094 17 5.9 0.7 31 90 68 127 55 133 0.81 ToxR activated gene A lipoprotein domain TagA PF12561.8 99 pCP014743_00002 - 210 1.1 9.7 3.4 2 2 0.0027 49 4.4 0.1 63 88 184 209 166 210 0.84 ToxR activated gene A lipoprotein domain DUF4299 PF14132.6 301 pCP014743_00003 - 116 3.2e-08 33.4 0.1 1 1 6.2e-12 3.7e-08 33.2 0.1 189 300 12 110 5 111 0.85 Domain of unknown function (DUF4299) A2M PF00207.22 92 pCP014743_00003 - 116 0.11 12.3 0.0 1 1 2.6e-05 0.16 11.9 0.0 17 56 49 89 36 94 0.81 Alpha-2-macroglobulin family XPG_I PF00867.18 94 pCP014743_00003 - 116 0.13 12.7 0.0 1 1 2.6e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region AHH PF14412.6 114 pCP014743_00005 - 259 5.3e-16 58.7 1.4 1 1 1.1e-19 9.6e-16 57.9 1.4 10 113 155 241 148 242 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH RRF PF01765.19 162 pCP014743_00005 - 259 0.12 12.3 4.7 1 2 1.8e-05 0.16 11.9 0.1 124 153 163 193 112 199 0.86 Ribosome recycling factor RRF PF01765.19 162 pCP014743_00005 - 259 0.12 12.3 4.7 2 2 0.025 2.3e+02 1.7 1.1 121 146 215 242 207 256 0.69 Ribosome recycling factor Glyco_hydro_59 PF02057.15 294 pCP014743_00007 - 287 0.022 14.0 1.2 1 1 2.4e-06 0.043 13.1 1.2 109 165 106 159 99 178 0.87 Glycosyl hydrolase family 59 Nucleoside_tran PF01733.18 309 pCP014743_00009 - 289 0.15 11.4 2.7 1 1 4.6e-05 0.28 10.5 2.7 71 192 10 129 3 134 0.66 Nucleoside transporter Turandot PF07240.11 81 pCP014743_00009 - 289 0.19 11.7 1.3 1 2 0.75 4.5e+03 -2.3 0.0 17 40 25 48 22 54 0.61 Stress-inducible humoral factor Turandot Turandot PF07240.11 81 pCP014743_00009 - 289 0.19 11.7 1.3 2 2 8e-05 0.48 10.4 0.6 2 28 247 273 246 288 0.77 Stress-inducible humoral factor Turandot Sigma70_ner PF04546.13 204 pCP014743_00009 - 289 0.2 11.5 6.4 1 2 0.03 1.8e+02 1.9 0.4 16 78 33 83 20 120 0.46 Sigma-70, non-essential region Sigma70_ner PF04546.13 204 pCP014743_00009 - 289 0.2 11.5 6.4 2 2 1.7e-05 0.1 12.4 1.0 88 125 238 276 228 285 0.90 Sigma-70, non-essential region Rapsyn_N PF10579.9 80 pCP014743_00011 - 358 0.53 10.4 3.8 1 3 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 pCP014743_00011 - 358 0.53 10.4 3.8 2 3 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 pCP014743_00011 - 358 0.53 10.4 3.8 3 3 0.24 4.3e+03 -2.1 0.1 19 34 340 355 329 356 0.74 Rapsyn N-terminal myristoylation and linker region DUF2768 PF10966.8 58 pCP014743_00012 - 114 0.0086 16.5 0.2 1 2 1.9e-06 0.0086 16.5 0.2 22 57 37 72 35 72 0.95 Protein of unknown function (DUF2768) DUF2768 PF10966.8 58 pCP014743_00012 - 114 0.0086 16.5 0.2 2 2 0.4 1.8e+03 -0.5 1.3 6 13 96 103 79 108 0.53 Protein of unknown function (DUF2768) DiS_P_DiS PF06750.13 84 pCP014743_00012 - 114 0.027 14.6 0.4 1 1 1.2e-05 0.054 13.6 0.4 29 73 6 50 2 59 0.84 Bacterial Peptidase A24 N-terminal domain DZR PF12773.7 49 pCP014743_00012 - 114 0.028 14.4 0.3 1 1 8.3e-06 0.037 14.0 0.3 13 37 5 38 2 45 0.88 Double zinc ribbon zinc_ribbon_4 PF13717.6 36 pCP014743_00012 - 114 0.14 12.1 4.3 1 2 0.072 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP014743_00012 - 114 0.14 12.1 4.3 2 2 3.5e-05 0.16 12.0 0.3 3 16 30 43 29 47 0.86 zinc-ribbon domain Importin_rep PF18773.1 40 pCP014743_00013 - 260 0.018 14.7 0.1 1 1 6.7e-06 0.04 13.6 0.1 16 27 231 242 226 249 0.90 Importin 13 repeat DUF327 PF03885.13 143 pCP014743_00013 - 260 0.075 13.0 0.1 1 3 0.41 2.5e+03 -1.7 0.1 97 109 43 55 22 76 0.50 Protein of unknown function (DUF327) DUF327 PF03885.13 143 pCP014743_00013 - 260 0.075 13.0 0.1 2 3 0.96 5.7e+03 -2.8 0.0 22 24 140 142 116 165 0.49 Protein of unknown function (DUF327) DUF327 PF03885.13 143 pCP014743_00013 - 260 0.075 13.0 0.1 3 3 1.3e-05 0.075 13.0 0.1 48 85 217 254 191 258 0.89 Protein of unknown function (DUF327) BLOC1_2 PF10046.9 96 pCP014743_00013 - 260 0.94 9.8 4.4 1 3 2.1 1.2e+04 -3.4 0.1 38 61 48 71 47 73 0.65 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP014743_00013 - 260 0.94 9.8 4.4 2 3 4.3e-05 0.26 11.6 0.4 22 75 115 172 110 179 0.87 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP014743_00013 - 260 0.94 9.8 4.4 3 3 0.81 4.8e+03 -2.1 0.0 70 79 245 254 228 258 0.43 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GPD PF05954.11 304 pCP014743_00014 - 833 5.9e-18 65.2 0.0 1 1 1e-21 9.4e-18 64.5 0.0 22 281 73 360 45 376 0.76 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 pCP014743_00014 - 833 0.11 12.2 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 pCP014743_00014 - 833 0.11 12.2 0.0 2 2 0.00042 3.8 7.2 0.0 19 49 456 486 447 513 0.81 TCL1/MTCP1 family T6SS_TssG PF06996.11 299 pCP014743_00015 - 302 3.5e-47 161.1 0.0 1 1 2.2e-51 3.9e-47 160.9 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG T6SS_TssF PF05947.12 603 pCP014743_00016 - 573 2.2e-110 370.0 0.0 1 1 1.4e-114 2.5e-110 369.8 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF GPW_gp25 PF04965.14 95 pCP014743_00017 - 130 2.2e-09 36.9 0.0 1 1 4.8e-13 2.9e-09 36.6 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 pCP014743_00017 - 130 0.021 14.7 0.3 1 1 4.5e-06 0.027 14.3 0.3 94 159 21 87 5 92 0.87 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 pCP014743_00017 - 130 0.072 12.6 0.2 1 2 2.9e-05 0.17 11.3 0.1 82 121 5 46 1 64 0.84 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 pCP014743_00017 - 130 0.072 12.6 0.2 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 422 pCP014743_00018 - 484 6e-170 565.6 0.0 1 1 7.9e-174 7.1e-170 565.3 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 pCP014743_00018 - 484 0.33 11.0 2.6 1 4 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pCP014743_00018 - 484 0.33 11.0 2.6 2 4 1.5 1.4e+04 -3.9 0.0 103 117 130 143 127 147 0.66 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pCP014743_00018 - 484 0.33 11.0 2.6 3 4 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pCP014743_00018 - 484 0.33 11.0 2.6 4 4 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 155 pCP014743_00019 - 161 6.4e-52 175.5 3.9 1 1 8e-56 7.2e-52 175.3 3.9 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 pCP014743_00019 - 161 0.14 10.8 0.0 1 1 1.8e-05 0.16 10.5 0.0 171 227 55 111 40 127 0.90 Chitin synthase T6SS_VasJ PF16989.5 255 pCP014743_00020 - 411 1.2e-12 47.9 0.0 1 1 2.9e-16 1.7e-12 47.4 0.0 3 153 172 319 170 404 0.84 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 pCP014743_00020 - 411 0.00013 22.0 0.2 1 2 1.3e-07 0.00079 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 pCP014743_00020 - 411 0.00013 22.0 0.2 2 2 0.23 1.4e+03 -0.6 0.0 47 71 181 205 158 208 0.83 ImpA, N-terminal, type VI secretion system PX PF00787.24 113 pCP014743_00020 - 411 0.0034 17.4 13.8 1 3 9.9e-06 0.059 13.3 1.9 31 111 33 126 19 127 0.76 PX domain PX PF00787.24 113 pCP014743_00020 - 411 0.0034 17.4 13.8 2 3 0.00062 3.7 7.6 0.2 16 112 151 271 128 272 0.68 PX domain PX PF00787.24 113 pCP014743_00020 - 411 0.0034 17.4 13.8 3 3 0.038 2.3e+02 1.8 0.7 22 97 312 392 292 400 0.70 PX domain T6SS-SciN PF12790.7 120 pCP014743_00021 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 428 pCP014743_00022 - 465 4.7e-112 374.8 0.0 1 1 3.1e-116 5.5e-112 374.6 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 205 pCP014743_00023 - 257 3.6e-35 121.5 0.0 1 1 2.3e-39 4.2e-35 121.4 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_HCP PF05638.12 129 pCP014743_00024 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 259 pCP014743_00025 - 1175 6.2e-41 140.5 0.0 1 1 4.1e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 pCP014743_00025 - 1175 5.9e-40 137.1 0.5 1 1 4.1e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 pCP014743_00025 - 1175 8.2e-27 94.5 2.1 1 1 4.9e-30 1.3e-26 93.9 2.1 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 pCP014743_00025 - 1175 0.0003 20.7 0.0 1 2 8.9e-06 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 pCP014743_00025 - 1175 0.0003 20.7 0.0 2 2 0.047 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 pCP014743_00025 - 1175 0.0011 19.0 0.1 1 2 1.7e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 pCP014743_00025 - 1175 0.0011 19.0 0.1 2 2 4.1 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 pCP014743_00025 - 1175 0.0041 16.8 4.8 1 3 1.4e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 pCP014743_00025 - 1175 0.0041 16.8 4.8 2 3 0.13 3.4e+02 0.8 0.0 41 77 451 487 432 583 0.80 O-Antigen ligase Wzy_C PF04932.15 155 pCP014743_00025 - 1175 0.0041 16.8 4.8 3 3 0.076 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 pCP014743_00025 - 1175 0.055 13.2 0.1 1 2 0.00017 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pCP014743_00025 - 1175 0.055 13.2 0.1 2 2 0.76 1.9e+03 -1.3 0.0 22 37 841 856 831 870 0.75 P-loop containing region of AAA domain FHA PF00498.26 69 pCP014743_00026 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 pCP014743_00026 - 299 0.0007 19.9 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 pCP014743_00026 - 299 0.0007 19.9 0.0 2 2 0.23 1.4e+03 -0.3 0.0 31 57 199 225 198 231 0.89 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 pCP014743_00026 - 299 0.05 14.0 3.1 1 2 0.044 2.6e+02 2.1 0.1 18 58 107 147 105 150 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 pCP014743_00026 - 299 0.05 14.0 3.1 2 2 7.4e-05 0.44 11.0 0.9 21 82 151 212 146 218 0.92 Ferredoxin-fold anticodon binding domain DUF3870 PF12986.7 94 pCP014743_00027 - 410 0.098 12.9 0.0 1 1 1.3e-05 0.22 11.7 0.0 11 62 4 58 1 70 0.79 Domain of unknown function (DUF3870) DUF2459 PF09601.10 171 pCP014743_00030 - 432 0.053 13.3 1.1 1 2 1.3e-05 0.12 12.2 0.1 87 163 131 199 119 201 0.72 Protein of unknown function (DUF2459) DUF2459 PF09601.10 171 pCP014743_00030 - 432 0.053 13.3 1.1 2 2 0.32 2.8e+03 -2.1 0.1 143 143 289 289 239 346 0.63 Protein of unknown function (DUF2459) BLOC1_2 PF10046.9 96 pCP014743_00030 - 432 0.1 12.9 2.0 1 2 2.8e-05 0.25 11.7 1.0 44 95 263 314 260 315 0.94 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP014743_00030 - 432 0.1 12.9 2.0 2 2 2 1.8e+04 -4.1 0.0 20 30 349 359 345 364 0.58 Biogenesis of lysosome-related organelles complex-1 subunit 2 Put_DNA-bind_N PF06971.13 49 pCP014743_00031 - 141 0.016 15.2 0.0 1 1 1.5e-06 0.027 14.5 0.0 11 34 4 27 3 30 0.95 Putative DNA-binding protein N-terminus Toprim_3 PF13362.6 95 pCP014743_00032 - 409 2.4e-08 34.2 0.1 1 2 1.4 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pCP014743_00032 - 409 2.4e-08 34.2 0.1 2 2 1.4e-11 6.4e-08 32.9 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pCP014743_00032 - 409 0.017 15.4 0.2 1 2 0.024 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pCP014743_00032 - 409 0.017 15.4 0.2 2 2 0.00027 1.2 9.4 0.0 15 83 283 359 277 382 0.82 Retrotransposon gag protein DUF2315 PF10231.9 123 pCP014743_00032 - 409 0.023 14.8 6.8 1 3 0.00028 1.3 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP014743_00032 - 409 0.023 14.8 6.8 2 3 0.0016 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP014743_00032 - 409 0.023 14.8 6.8 3 3 1.3 5.9e+03 -2.7 0.0 20 90 355 373 339 384 0.54 Apoptogenic protein 1 5_3_exonuc PF01367.20 97 pCP014743_00032 - 409 0.25 12.0 1.7 1 2 0.62 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP014743_00032 - 409 0.25 12.0 1.7 2 2 0.00012 0.53 10.9 0.2 15 81 322 384 321 401 0.72 5'-3' exonuclease, C-terminal SAM fold NYN PF01936.18 147 pCP014743_00034 - 180 1.1e-09 39.0 0.0 1 1 2e-13 1.2e-09 38.8 0.0 60 123 74 146 15 161 0.80 NYN domain Peroxin-22 PF12827.7 113 pCP014743_00034 - 180 0.004 17.0 0.6 1 1 1.3e-06 0.0079 16.1 0.6 25 105 81 162 46 169 0.76 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 pCP014743_00034 - 180 0.029 15.0 0.0 1 1 8.3e-06 0.049 14.2 0.0 61 103 100 142 77 142 0.87 PIN domain PTS-HPr PF00381.19 82 pCP014743_00035 - 44 0.17 12.1 0.0 1 1 1.1e-05 0.19 12.0 0.0 34 61 13 39 2 43 0.75 PTS HPr component phosphorylation site RHH_7 PF16777.5 74 pCP014743_00036 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 pCP014743_00036 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal AAA_31 PF13614.6 177 pCP014743_00037 - 186 6.9e-05 22.8 0.5 1 2 2.1e-07 0.00093 19.2 0.1 3 26 2 25 1 31 0.91 AAA domain AAA_31 PF13614.6 177 pCP014743_00037 - 186 6.9e-05 22.8 0.5 2 2 0.04 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pCP014743_00037 - 186 0.001 19.1 0.5 1 1 1.9e-06 0.0086 16.1 0.5 1 55 3 89 3 167 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP014743_00037 - 186 0.014 14.8 0.0 1 1 4.2e-06 0.019 14.4 0.0 17 109 69 171 61 180 0.77 short chain dehydrogenase ParA PF10609.9 246 pCP014743_00037 - 186 0.17 11.3 0.0 1 1 5.9e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pCP014743_00038 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP014743_00038 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 pCP014743_00039 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP014743_00039 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP014743_00039 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP014743_00039 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP014743_00039 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP014743_00039 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 pCP014743_00040 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP014743_00040 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP014743_00040 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pCP014743_00040 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pCP014743_00040 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pCP014743_00040 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP014743_00040 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP014743_00040 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP014743_00040 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 pCP014743_00041 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCP014743_00041 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain CtsR_C PF17727.1 72 pCP014743_00042 - 120 0.047 13.8 0.3 1 2 0.00025 4.4 7.5 0.0 3 38 25 60 22 67 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP014743_00042 - 120 0.047 13.8 0.3 2 2 0.0022 40 4.4 0.0 28 48 68 88 65 102 0.85 CtsR C-terminal dimerization domain W2 PF02020.18 79 pCP014743_00043 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pCP014743_00043 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pCP014743_00043 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Asp-B-Hydro_N PF05279.11 243 pCP014743_00045 - 114 2.9 7.9 12.2 1 1 0.00019 3.4 7.7 12.2 114 210 6 104 3 113 0.78 Aspartyl beta-hydroxylase N-terminal region GTP_EFTU PF00009.27 194 pCP014743_00046 - 639 8.1e-59 198.4 0.4 1 1 5.7e-62 1.1e-58 198.0 0.4 2 191 2 237 1 240 0.93 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP014743_00046 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP014743_00046 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP014743_00046 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP014743_00046 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP014743_00046 - 639 1.8e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP014743_00046 - 639 0.00029 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP014743_00046 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP014743_00046 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP014743_00046 - 639 0.047 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 pCP014743_00048 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP014743_00048 - 473 0.022 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain Topoisom_bac PF01131.20 413 pCP014743_00049 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP014743_00049 - 730 5.6e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP014743_00049 - 730 5.6e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP014743_00049 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP014743_00049 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP014743_00049 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP014743_00049 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP014743_00049 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP014743_00049 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP014743_00049 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP014743_00049 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP014743_00049 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pCP014743_00049 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pCP014743_00049 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pCP014743_00049 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP014743_00049 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP014743_00049 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP014743_00049 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pCP014743_00049 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pCP014743_00049 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP014743_00049 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pCP014743_00049 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP014743_00049 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP014743_00049 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP014743_00049 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP014743_00049 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP014743_00049 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP014743_00049 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP014743_00049 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP014743_00049 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP014743_00049 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP014743_00049 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP014743_00049 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP014743_00049 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 pCP014743_00050 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP014743_00050 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 pCP014743_00051 - 265 0.038 13.8 0.4 1 2 0.9 5.4e+03 -2.9 0.1 129 153 22 46 15 49 0.68 PRELI-like family PRELI PF04707.14 157 pCP014743_00051 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP014743_00051 - 265 0.077 11.7 0.0 1 1 1.8e-05 0.1 11.2 0.0 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP014743_00051 - 265 0.74 9.8 5.2 1 3 0.4 2.4e+03 -1.6 0.1 113 134 21 42 5 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP014743_00051 - 265 0.74 9.8 5.2 2 3 7.4e-05 0.44 10.5 1.9 42 108 120 185 89 189 0.81 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP014743_00051 - 265 0.74 9.8 5.2 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 pCP014743_00052 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 pCP014743_00053 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pCP014743_00053 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pCP014743_00053 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP014743_00053 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP014743_00053 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 pCP014743_00054 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP014743_00054 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP014743_00054 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP014743_00054 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP014743_00054 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Phage_pRha PF09669.10 88 pCP014743_00055 - 221 3.4e-21 75.6 0.1 1 2 1.9e-25 3.4e-21 75.6 0.1 2 88 38 125 37 125 0.92 Phage regulatory protein Rha (Phage_pRha) Phage_pRha PF09669.10 88 pCP014743_00055 - 221 3.4e-21 75.6 0.1 2 2 0.21 3.7e+03 -1.4 0.4 38 45 198 209 140 220 0.65 Phage regulatory protein Rha (Phage_pRha) T2SSE PF00437.20 273 pCP014743_00056 - 332 6.4e-54 182.8 0.0 1 1 1.3e-56 7.4e-54 182.6 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP014743_00056 - 332 6.1e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP014743_00056 - 332 0.00016 21.1 0.0 1 1 4.3e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP014743_00056 - 332 0.00022 20.8 0.0 1 1 6.5e-07 0.00038 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP014743_00056 - 332 0.0014 18.9 0.0 1 1 4.4e-06 0.0026 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP014743_00056 - 332 0.0026 17.5 0.0 1 1 9.1e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP014743_00056 - 332 0.003 17.3 0.0 1 1 8.2e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP014743_00056 - 332 0.0037 17.3 0.0 1 1 1.3e-05 0.0073 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP014743_00056 - 332 0.0049 15.9 0.0 1 1 1.2e-05 0.0072 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP014743_00056 - 332 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP014743_00056 - 332 0.0087 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP014743_00056 - 332 0.0088 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP014743_00056 - 332 0.018 14.8 0.0 1 1 6.3e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP014743_00056 - 332 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 244 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP014743_00056 - 332 0.022 13.7 0.0 1 1 5.8e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP014743_00056 - 332 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP014743_00056 - 332 0.024 14.4 0.0 1 1 9.2e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP014743_00056 - 332 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP014743_00056 - 332 0.035 13.5 0.0 1 1 9.7e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP014743_00056 - 332 0.037 14.4 0.0 1 1 0.00018 0.11 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP014743_00056 - 332 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP014743_00056 - 332 0.039 13.2 0.0 1 1 0.00012 0.069 12.4 0.0 14 49 158 193 145 207 0.83 Zeta toxin PRK PF00485.18 197 pCP014743_00056 - 332 0.052 13.3 0.0 1 1 0.00019 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP014743_00056 - 332 0.063 11.9 0.0 1 1 0.00015 0.086 11.4 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP014743_00056 - 332 0.065 13.6 0.0 1 1 0.00017 0.1 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP014743_00056 - 332 0.085 12.8 0.4 1 1 0.00039 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP014743_00056 - 332 0.089 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP014743_00056 - 332 0.11 12.4 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP014743_00056 - 332 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP014743_00056 - 332 0.2 11.4 0.0 1 1 0.00054 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP014743_00056 - 332 0.29 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP014743_00056 - 332 0.29 11.6 3.1 2 2 0.00055 0.32 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 pCP014743_00057 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP014743_00057 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 pCP014743_00058 - 295 6.2e-55 186.2 1.7 1 1 1.1e-58 1e-54 185.5 1.7 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP014743_00058 - 295 0.082 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP014743_00058 - 295 0.082 12.7 0.3 2 2 1.1 9.7e+03 -3.7 0.1 50 62 130 142 124 149 0.68 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 pCP014743_00059 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP014743_00059 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 pCP014743_00060 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP014743_00060 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 pCP014743_00061 - 330 2.7e-29 102.5 30.5 1 1 3e-33 2.7e-29 102.5 30.5 1 214 38 250 38 251 0.92 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP014743_00061 - 330 0.21 11.4 1.5 1 2 0.13 1.2e+03 -0.6 0.1 38 65 68 101 59 114 0.50 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP014743_00061 - 330 0.21 11.4 1.5 2 2 7.3e-05 0.65 9.8 0.1 29 81 232 286 201 298 0.76 T-cell leukemia translocation-altered T4SS PF07996.11 197 pCP014743_00062 - 328 1.9e-28 100.2 13.4 1 1 1e-31 2.7e-28 99.7 13.4 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP014743_00062 - 328 0.0072 16.4 1.8 1 3 1 2.6e+03 -1.4 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP014743_00062 - 328 0.0072 16.4 1.8 2 3 8.3e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP014743_00062 - 328 0.0072 16.4 1.8 3 3 1.4 3.7e+03 -1.9 0.0 62 79 302 319 292 327 0.75 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP014743_00062 - 328 0.0092 16.7 6.0 1 2 0.046 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP014743_00062 - 328 0.0092 16.7 6.0 2 2 3.6e-06 0.0092 16.7 6.0 49 125 225 315 205 322 0.78 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 pCP014743_00062 - 328 0.072 13.8 1.0 1 2 2.2 5.8e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP014743_00062 - 328 0.072 13.8 1.0 2 2 2.8e-05 0.072 13.8 1.0 32 84 209 270 199 295 0.83 von Willebrand factor type A domain Phage_holin_6_1 PF09682.10 101 pCP014743_00062 - 328 0.13 12.7 8.7 1 2 0.00011 0.27 11.7 0.3 4 62 77 136 75 154 0.81 Bacteriophage holin of superfamily 6 (Holin_LLH) Phage_holin_6_1 PF09682.10 101 pCP014743_00062 - 328 0.13 12.7 8.7 2 2 0.02 51 4.4 2.4 36 90 268 323 251 327 0.83 Bacteriophage holin of superfamily 6 (Holin_LLH) DUF3752 PF12572.8 152 pCP014743_00062 - 328 2.3 8.7 8.3 1 2 0.0038 9.6 6.7 0.3 21 49 106 136 98 152 0.70 Protein of unknown function (DUF3752) DUF3752 PF12572.8 152 pCP014743_00062 - 328 2.3 8.7 8.3 2 2 0.012 31 5.1 2.6 33 106 233 320 218 328 0.76 Protein of unknown function (DUF3752) WXG100 PF06013.12 86 pCP014743_00062 - 328 7.2 6.9 12.9 1 3 0.25 6.5e+02 0.7 0.8 7 38 112 143 102 186 0.61 Proteins of 100 residues with WXG WXG100 PF06013.12 86 pCP014743_00062 - 328 7.2 6.9 12.9 2 3 0.00039 1 9.7 0.7 48 85 226 263 223 264 0.86 Proteins of 100 residues with WXG WXG100 PF06013.12 86 pCP014743_00062 - 328 7.2 6.9 12.9 3 3 0.04 1e+02 3.2 0.3 27 65 275 313 266 322 0.87 Proteins of 100 residues with WXG IF2_N PF04760.15 54 pCP014743_00063 - 91 6.5e-05 22.7 5.8 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP014743_00063 - 91 6.5e-05 22.7 5.8 2 2 0.0075 34 4.4 0.1 31 53 57 79 56 80 0.87 Translation initiation factor IF-2, N-terminal region HTH_16 PF12645.7 65 pCP014743_00063 - 91 0.013 15.5 1.9 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP014743_00063 - 91 0.013 15.5 1.9 2 2 2.8e-05 0.13 12.4 0.3 15 54 44 82 40 85 0.87 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP014743_00063 - 91 0.029 15.1 0.5 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP014743_00063 - 91 0.029 15.1 0.5 2 2 0.014 63 4.4 0.0 29 51 69 91 64 91 0.83 Rv0623-like transcription factor FliG_N PF14842.6 104 pCP014743_00063 - 91 0.039 14.5 1.0 1 1 1e-05 0.046 14.3 1.0 21 86 9 80 1 85 0.89 FliG N-terminal domain SSB PF00436.25 104 pCP014743_00064 - 141 2.5e-24 85.3 0.1 1 1 1.8e-28 3.2e-24 85.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family FapA PF03961.13 454 pCP014743_00065 - 221 0.072 11.7 13.7 1 2 2.2e-06 0.0066 15.1 7.2 332 412 3 86 1 142 0.88 Flagellar Assembly Protein A FapA PF03961.13 454 pCP014743_00065 - 221 0.072 11.7 13.7 2 2 0.057 1.7e+02 0.6 0.9 293 363 139 215 121 221 0.63 Flagellar Assembly Protein A DUF3251 PF11622.8 165 pCP014743_00065 - 221 0.085 12.5 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) Fib_alpha PF08702.10 143 pCP014743_00065 - 221 1.1 9.4 11.4 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP014743_00065 - 221 1.1 9.4 11.4 2 3 0.38 1.1e+03 -0.3 0.0 110 126 136 152 113 164 0.63 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP014743_00065 - 221 1.1 9.4 11.4 3 3 0.58 1.7e+03 -0.9 0.2 36 52 193 209 177 220 0.44 Fibrinogen alpha/beta chain family DUF5082 PF16888.5 123 pCP014743_00065 - 221 1.8 8.9 13.9 1 2 0.00034 1 9.7 0.6 92 122 5 35 3 36 0.82 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pCP014743_00065 - 221 1.8 8.9 13.9 2 2 0.0058 17 5.7 2.9 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pCP014743_00065 - 221 4.4 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP014743_00065 - 221 4.4 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP014743_00065 - 221 4.4 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) Ax_dynein_light PF10211.9 187 pCP014743_00065 - 221 4.5 7.2 15.1 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP014743_00065 - 221 4.5 7.2 15.1 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP014743_00065 - 221 4.5 7.2 15.1 3 3 0.18 5.3e+02 0.4 0.7 110 141 178 214 173 221 0.41 Axonemal dynein light chain Phage_pRha PF09669.10 88 pCP014743_00066 - 188 2e-29 102.0 0.1 1 1 1.9e-33 3.3e-29 101.3 0.1 2 88 24 122 23 122 0.83 Phage regulatory protein Rha (Phage_pRha) CagE_TrbE_VirB PF03135.14 206 pCP014743_00067 - 922 9.3e-49 166.3 0.3 1 1 5.2e-52 2.3e-48 165.0 0.3 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP014743_00067 - 922 7e-21 74.3 1.2 1 1 2.8e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 pCP014743_00067 - 922 1.5e-07 30.7 0.8 1 1 7.7e-11 3.5e-07 29.5 0.8 23 318 547 843 533 856 0.73 AAA-like domain DUF87 PF01935.17 227 pCP014743_00067 - 922 0.039 14.0 5.4 1 5 0.57 2.6e+03 -1.7 0.2 134 201 188 252 129 286 0.48 Helicase HerA, central domain DUF87 PF01935.17 227 pCP014743_00067 - 922 0.039 14.0 5.4 2 5 0.81 3.6e+03 -2.2 0.0 87 124 263 298 237 301 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 pCP014743_00067 - 922 0.039 14.0 5.4 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 pCP014743_00067 - 922 0.039 14.0 5.4 4 5 0.0066 30 4.6 0.2 100 178 638 716 630 731 0.75 Helicase HerA, central domain DUF87 PF01935.17 227 pCP014743_00067 - 922 0.039 14.0 5.4 5 5 0.31 1.4e+03 -0.8 0.1 43 108 751 811 747 916 0.59 Helicase HerA, central domain TrbC PF04956.13 99 pCP014743_00068 - 87 1.4e-15 57.3 6.9 1 1 1.8e-19 1.6e-15 57.1 6.9 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP014743_00068 - 87 0.041 13.8 3.5 1 1 5.4e-06 0.049 13.5 3.3 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pCP014743_00070 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP014743_00070 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pCP014743_00070 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase Resolvase PF00239.21 146 pCP014743_00071 - 204 9.1e-32 110.2 0.6 1 1 2.7e-35 1.2e-31 109.8 0.6 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP014743_00071 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP014743_00071 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP014743_00071 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP014743_00071 - 204 0.065 13.3 4.7 1 3 0.00015 0.68 10.0 0.7 27 59 12 44 6 45 0.87 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP014743_00071 - 204 0.065 13.3 4.7 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP014743_00071 - 204 0.065 13.3 4.7 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCP014743_00071 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP014743_00071 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP014743_00071 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat AAA_25 PF13481.6 194 pCP014743_00072 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pCP014743_00072 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP014743_00072 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP014743_00072 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP014743_00072 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pCP014743_00072 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP014743_00072 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pCP014743_00072 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pCP014743_00072 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pCP014743_00072 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pCP014743_00072 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pCP014743_00072 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain HicA_toxin PF07927.12 58 pCP014743_00073 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pCP014743_00074 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 pCP014743_00075 - 85 0.0043 17.1 1.7 1 1 6e-07 0.0054 16.8 1.7 34 88 20 76 18 80 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2633 PF11119.8 57 pCP014743_00075 - 85 0.93 9.4 4.2 1 1 0.00019 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) DUF4223 PF13978.6 54 pCP014743_00076 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pCP014743_00076 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pCP014743_00076 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 pCP014743_00077 - 408 2.1e-08 34.4 0.0 1 1 7.1e-12 4.2e-08 33.4 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pCP014743_00077 - 408 0.088 12.8 0.8 1 2 6.1e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Paz_1 PF18349.1 93 pCP014743_00077 - 408 0.088 12.8 0.8 2 2 0.47 2.8e+03 -1.7 0.0 63 90 257 283 221 285 0.49 PAZ domain 5_3_exonuc PF01367.20 97 pCP014743_00077 - 408 0.17 12.5 4.7 1 2 0.019 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP014743_00077 - 408 0.17 12.5 4.7 2 2 0.00015 0.89 10.2 0.4 15 79 321 381 320 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF2400 PF09674.10 227 pCP014743_00078 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pCP014743_00078 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Sds3 PF08598.11 218 pCP014743_00080 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pCP014743_00080 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP014743_00080 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pCP014743_00080 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP014743_00080 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 pCP014743_00081 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP014743_00081 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP014743_00081 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP014743_00081 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP014743_00081 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP014743_00081 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP014743_00081 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pCP014743_00081 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP014743_00081 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 pCP014743_00081 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP014743_00081 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain Relaxase PF03432.14 242 pCP014743_00082 - 462 5.1e-10 39.4 7.2 1 2 2.9e-14 5.1e-10 39.4 7.2 48 228 119 296 70 309 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP014743_00082 - 462 5.1e-10 39.4 7.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_19 PF12844.7 65 pCP014743_00083 - 314 1e-05 25.5 0.2 1 2 0.0055 7.1 6.7 0.0 11 31 9 29 1 42 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 pCP014743_00083 - 314 1e-05 25.5 0.2 2 2 8.1e-06 0.01 15.8 0.0 27 64 116 152 91 153 0.90 Helix-turn-helix domain HTH_3 PF01381.22 55 pCP014743_00083 - 314 5.4e-05 23.2 0.0 1 2 3.6e-07 0.00046 20.2 0.0 2 29 3 30 2 30 0.90 Helix-turn-helix HTH_3 PF01381.22 55 pCP014743_00083 - 314 5.4e-05 23.2 0.0 2 2 0.67 8.6e+02 0.1 0.0 26 55 118 147 107 147 0.85 Helix-turn-helix Phage_CI_repr PF07022.13 65 pCP014743_00083 - 314 0.0011 19.0 0.0 1 2 6.6e-05 0.084 13.0 0.0 11 49 10 47 2 50 0.77 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP014743_00083 - 314 0.0011 19.0 0.0 2 2 0.064 82 3.4 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 pCP014743_00083 - 314 0.0078 15.7 0.0 1 2 8.2e-05 0.11 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP014743_00083 - 314 0.0078 15.7 0.0 2 2 0.29 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 pCP014743_00083 - 314 0.015 15.4 0.0 1 1 2.9e-05 0.037 14.2 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 pCP014743_00083 - 314 0.016 15.0 0.1 1 2 5.1e-05 0.065 13.1 0.0 4 36 5 37 2 49 0.75 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 pCP014743_00083 - 314 0.016 15.0 0.1 2 2 2.5 3.2e+03 -1.9 0.1 38 47 290 299 289 300 0.87 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 pCP014743_00083 - 314 0.019 14.7 0.0 1 1 3.5e-05 0.045 13.6 0.0 16 37 7 30 1 36 0.86 Homeodomain-like domain Imm3 PF14425.6 119 pCP014743_00083 - 314 0.042 13.9 0.1 1 1 6.8e-05 0.087 12.9 0.1 33 113 26 104 2 109 0.75 Immunity protein Imm3 HTH_26 PF13443.6 63 pCP014743_00083 - 314 0.071 13.6 0.0 1 1 0.00012 0.16 12.4 0.0 3 30 3 30 1 38 0.88 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.7 51 pCP014743_00083 - 314 0.097 12.9 0.0 1 2 0.13 1.7e+02 2.5 0.0 5 16 3 14 2 16 0.90 Helix-turn-helix domain HTH_17 PF12728.7 51 pCP014743_00083 - 314 0.097 12.9 0.0 2 2 0.0011 1.4 9.2 0.0 5 27 14 36 11 42 0.83 Helix-turn-helix domain HTH_31 PF13560.6 64 pCP014743_00083 - 314 0.1 12.9 0.0 1 1 0.00016 0.2 12.0 0.0 12 33 8 29 2 40 0.88 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 pCP014743_00083 - 314 0.13 11.9 0.0 1 1 0.00027 0.35 10.6 0.0 25 46 9 30 5 30 0.93 Sigma-70, region 4 Phage_AlpA PF05930.12 51 pCP014743_00083 - 314 0.14 12.0 0.0 1 2 0.015 20 5.1 0.0 6 19 2 15 1 18 0.89 Prophage CP4-57 regulatory protein (AlpA) Phage_AlpA PF05930.12 51 pCP014743_00083 - 314 0.14 12.0 0.0 2 2 0.0031 4 7.3 0.0 5 23 12 30 11 35 0.88 Prophage CP4-57 regulatory protein (AlpA) HTH_Mga PF08280.11 60 pCP014743_00083 - 314 0.15 12.1 1.8 1 3 0.0044 5.6 7.1 0.1 21 37 11 27 4 30 0.89 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP014743_00083 - 314 0.15 12.1 1.8 2 3 0.065 83 3.3 0.0 25 59 41 75 32 76 0.80 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP014743_00083 - 314 0.15 12.1 1.8 3 3 9 1.2e+04 -3.5 0.0 46 50 94 98 86 105 0.47 M protein trans-acting positive regulator (MGA) HTH domain SNF2_N PF00176.23 350 pCP014743_00084 - 1931 1.4e-16 60.1 0.8 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1016 1272 934 1313 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP014743_00084 - 1931 1.4e-16 60.1 0.8 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP014743_00084 - 1931 1.4e-16 60.1 0.8 3 3 1.1 3.9e+03 -3.8 0.0 172 199 1878 1906 1859 1914 0.75 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP014743_00084 - 1931 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 648 691 638 783 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP014743_00084 - 1931 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 999 1211 998 1242 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP014743_00084 - 1931 4.9e-08 33.2 8.3 3 3 0.34 1.2e+03 -0.7 5.2 33 121 1797 1903 1746 1928 0.65 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP014743_00084 - 1931 9.4e-07 29.2 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1076 1104 1028 1108 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP014743_00084 - 1931 9.4e-07 29.2 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP014743_00084 - 1931 1.3e-05 25.0 2.0 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1003 1108 1002 1204 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP014743_00084 - 1931 1.3e-05 25.0 2.0 2 2 0.15 5.5e+02 0.2 0.1 120 143 1883 1908 1832 1928 0.67 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP014743_00084 - 1931 3e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 371 471 369 474 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP014743_00084 - 1931 3e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 660 699 644 718 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 pCP014743_00085 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 pCP014743_00086 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 pCP014743_00086 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pCP014743_00086 - 186 0.0021 18.1 0.9 1 1 2.9e-06 0.017 15.2 0.9 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP014743_00086 - 186 0.014 14.8 0.0 1 1 3.2e-06 0.019 14.4 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase NnrS PF05940.12 366 pCP014743_00088 - 124 0.023 14.1 9.9 1 1 1.3e-05 0.028 13.8 9.9 75 171 8 110 3 116 0.73 NnrS protein DUF2070 PF09843.9 564 pCP014743_00088 - 124 0.054 11.8 13.4 1 1 2.8e-05 0.063 11.6 13.4 80 176 9 115 3 123 0.72 Predicted membrane protein (DUF2070) DUF4199 PF13858.6 168 pCP014743_00088 - 124 0.15 12.4 19.9 1 2 0.0025 5.6 7.3 8.2 6 59 11 62 7 66 0.60 Protein of unknown function (DUF4199) DUF4199 PF13858.6 168 pCP014743_00088 - 124 0.15 12.4 19.9 2 2 0.00024 0.53 10.7 4.4 9 60 73 120 64 124 0.49 Protein of unknown function (DUF4199) Glucos_trans_II PF14264.6 297 pCP014743_00088 - 124 0.51 9.7 27.0 1 2 0.00022 0.49 9.7 7.9 226 278 5 53 2 59 0.81 Glucosyl transferase GtrII Glucos_trans_II PF14264.6 297 pCP014743_00088 - 124 0.51 9.7 27.0 2 2 0.007 16 4.8 11.0 138 187 67 113 58 123 0.55 Glucosyl transferase GtrII DUF5385 PF17359.2 220 pCP014743_00088 - 124 0.52 9.8 9.3 1 2 0.09 2e+02 1.4 0.6 5 30 35 61 32 67 0.59 Family of unknown function (DUF5385) DUF5385 PF17359.2 220 pCP014743_00088 - 124 0.52 9.8 9.3 2 2 4.4e-05 0.099 12.2 2.6 2 31 91 122 90 124 0.50 Family of unknown function (DUF5385) NVEALA PF14055.6 64 pCP014743_00088 - 124 4.1 7.4 6.4 1 3 1 2.3e+03 -1.4 0.1 15 15 43 43 30 67 0.50 NVEALA protein NVEALA PF14055.6 64 pCP014743_00088 - 124 4.1 7.4 6.4 2 3 0.04 89 3.2 0.5 9 35 72 98 62 99 0.79 NVEALA protein NVEALA PF14055.6 64 pCP014743_00088 - 124 4.1 7.4 6.4 3 3 0.0019 4.2 7.4 0.2 6 29 99 122 95 124 0.86 NVEALA protein TssN PF17555.2 275 pCP014743_00088 - 124 4.7 6.5 20.7 1 1 0.0026 5.9 6.2 20.7 38 142 9 116 2 122 0.71 Type VI secretion system, TssN DUF2663 PF10864.8 127 pCP014743_00088 - 124 6.7 7.1 10.9 1 2 0.1 2.3e+02 2.1 1.5 51 78 30 57 1 64 0.47 Protein of unknown function (DUF2663) DUF2663 PF10864.8 127 pCP014743_00088 - 124 6.7 7.1 10.9 2 2 0.016 36 4.8 8.5 17 83 56 121 27 123 0.75 Protein of unknown function (DUF2663) Lipase_3 PF01764.25 142 pCP014743_00089 - 531 3.6e-08 33.4 0.0 1 1 7.7e-11 1.4e-07 31.5 0.0 49 114 175 241 139 253 0.73 Lipase (class 3) DUF2974 PF11187.8 224 pCP014743_00089 - 531 2.8e-07 30.3 0.0 1 1 3.8e-10 6.7e-07 29.1 0.0 7 123 100 233 95 271 0.73 Protein of unknown function (DUF2974) PGAP1 PF07819.13 231 pCP014743_00089 - 531 2.7e-05 24.0 0.3 1 2 1.9e-07 0.00034 20.4 0.0 48 114 130 213 91 232 0.72 PGAP1-like protein PGAP1 PF07819.13 231 pCP014743_00089 - 531 2.7e-05 24.0 0.3 2 2 0.14 2.5e+02 1.2 0.1 44 83 306 346 271 361 0.77 PGAP1-like protein DUF676 PF05057.14 219 pCP014743_00089 - 531 5.3e-05 22.8 0.0 1 1 7.2e-08 0.00013 21.6 0.0 66 105 177 216 168 234 0.71 Putative serine esterase (DUF676) LIDHydrolase PF10230.9 266 pCP014743_00089 - 531 0.00045 19.9 0.1 1 1 5.2e-07 0.00093 18.8 0.1 66 101 168 206 133 217 0.71 Lipid-droplet associated hydrolase Abhydrolase_6 PF12697.7 220 pCP014743_00089 - 531 0.0017 19.0 0.0 1 1 1.3e-06 0.0024 18.5 0.0 51 87 175 215 140 258 0.74 Alpha/beta hydrolase family UPF0227 PF05728.12 187 pCP014743_00089 - 531 0.0021 18.1 0.9 1 3 5.7 1e+04 -3.8 0.1 123 146 54 77 36 87 0.53 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pCP014743_00089 - 531 0.0021 18.1 0.9 2 3 8e-06 0.014 15.3 0.0 40 80 172 211 144 227 0.70 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pCP014743_00089 - 531 0.0021 18.1 0.9 3 3 0.51 9.2e+02 -0.4 0.0 115 145 411 442 388 459 0.73 Uncharacterised protein family (UPF0227) DUF4450 PF14614.6 217 pCP014743_00089 - 531 0.016 14.8 0.1 1 1 2.7e-05 0.049 13.2 0.1 6 48 466 508 463 515 0.94 Domain of unknown function (DUF4450) DUF1257 PF06868.11 104 pCP014743_00089 - 531 0.24 11.7 2.3 1 3 0.0099 18 5.7 0.1 5 34 33 64 30 81 0.76 Protein of unknown function (DUF1257) DUF1257 PF06868.11 104 pCP014743_00089 - 531 0.24 11.7 2.3 2 3 0.021 38 4.6 0.1 29 69 415 455 401 468 0.84 Protein of unknown function (DUF1257) DUF1257 PF06868.11 104 pCP014743_00089 - 531 0.24 11.7 2.3 3 3 7.7 1.4e+04 -3.6 0.0 67 78 484 495 477 503 0.65 Protein of unknown function (DUF1257) SBDS PF01172.18 88 pCP014743_00089 - 531 0.79 9.8 5.3 1 2 1 1.9e+03 -1.0 0.1 20 41 43 63 27 110 0.69 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS PF01172.18 88 pCP014743_00089 - 531 0.79 9.8 5.3 2 2 0.00046 0.83 9.8 1.4 8 31 427 451 420 506 0.79 Shwachman-Bodian-Diamond syndrome (SBDS) protein SseC PF04888.12 317 pCP014743_00092 - 1305 0.0012 18.5 0.2 1 1 1.1e-06 0.0032 17.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family APOBEC_C PF05240.14 78 pCP014743_00092 - 1305 0.018 15.0 0.5 1 1 3e-05 0.091 12.7 0.5 26 76 766 819 755 821 0.86 APOBEC-like C-terminal domain ThrE PF06738.12 241 pCP014743_00092 - 1305 0.019 14.3 0.8 1 1 1.7e-05 0.051 12.9 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter Hormone_2 PF00123.20 28 pCP014743_00092 - 1305 0.033 14.1 0.1 1 1 5.2e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone PTS_EIIC_2 PF13303.6 328 pCP014743_00092 - 1305 0.037 13.1 1.0 1 1 2.1e-05 0.064 12.3 1.0 21 107 208 297 204 316 0.82 Phosphotransferase system, EIIC TPR_11 PF13414.6 42 pCP014743_00092 - 1305 0.064 12.9 0.3 1 1 5.9e-05 0.18 11.5 0.3 13 33 1193 1213 1192 1214 0.96 TPR repeat Glyco_tranf_2_5 PF13712.6 210 pCP014743_00094 - 267 0.00068 19.4 3.8 1 1 7.1e-08 0.0013 18.5 3.8 4 77 114 190 111 198 0.85 Glycosyltransferase like family TraG_N PF07916.11 467 pCP014743_00095 - 753 3.3e-42 144.9 22.9 1 2 3.7e-46 3.3e-42 144.9 22.9 12 465 2 449 1 455 0.80 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pCP014743_00095 - 753 3.3e-42 144.9 22.9 2 2 0.31 2.7e+03 -3.2 4.3 210 287 611 695 581 735 0.49 TraG-like protein, N-terminal region CHMI PF02962.15 124 pCP014743_00095 - 753 0.017 15.5 0.1 1 3 0.81 7.3e+03 -2.7 0.0 98 120 21 43 5 51 0.68 5-carboxymethyl-2-hydroxymuconate isomerase CHMI PF02962.15 124 pCP014743_00095 - 753 0.017 15.5 0.1 2 3 1.2e-05 0.11 12.9 0.0 47 120 69 144 61 148 0.78 5-carboxymethyl-2-hydroxymuconate isomerase CHMI PF02962.15 124 pCP014743_00095 - 753 0.017 15.5 0.1 3 3 0.67 6e+03 -2.5 0.0 45 97 546 600 538 619 0.62 5-carboxymethyl-2-hydroxymuconate isomerase YafQ_toxin PF15738.5 88 pCP014743_00098 - 93 2.5e-24 85.4 5.0 1 1 6.3e-28 2.8e-24 85.2 5.0 1 88 4 91 4 91 0.93 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 pCP014743_00098 - 93 9.5e-06 26.1 0.3 1 1 2.7e-09 1.2e-05 25.8 0.3 3 89 8 89 6 90 0.79 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 87 pCP014743_00098 - 93 0.00012 22.0 2.5 1 1 3.3e-08 0.00015 21.7 2.5 3 84 8 91 6 93 0.81 ParE-like toxin of type II bacterial toxin-antitoxin system BTHB PF18410.1 72 pCP014743_00098 - 93 0.086 12.7 1.5 1 3 0.04 1.8e+02 2.0 0.1 53 66 11 24 5 30 0.79 Basic tilted helix bundle domain BTHB PF18410.1 72 pCP014743_00098 - 93 0.086 12.7 1.5 2 3 0.16 7.4e+02 0.1 0.0 45 61 31 47 22 48 0.82 Basic tilted helix bundle domain BTHB PF18410.1 72 pCP014743_00098 - 93 0.086 12.7 1.5 3 3 0.0002 0.87 9.4 0.1 34 63 45 74 41 80 0.92 Basic tilted helix bundle domain HicB_lk_antitox PF15919.5 123 pCP014743_00100 - 119 8.3e-09 35.6 0.3 1 2 4.2e-06 0.038 14.1 0.0 1 60 12 74 12 79 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 pCP014743_00100 - 119 8.3e-09 35.6 0.3 2 2 3.9e-08 0.00035 20.7 0.1 88 123 77 108 72 108 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 pCP014743_00100 - 119 0.15 11.9 0.0 1 1 3.3e-05 0.29 11.0 0.0 3 35 80 112 79 115 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HicA_toxin PF07927.12 58 pCP014743_00101 - 75 1.7e-06 28.0 0.0 1 1 1.4e-10 2.5e-06 27.4 0.0 5 55 24 71 20 72 0.88 HicA toxin of bacterial toxin-antitoxin, Fic PF02661.18 97 pCP014743_00102 - 133 4.4e-05 24.3 0.0 1 1 8.9e-09 8e-05 23.5 0.0 23 97 6 76 2 76 0.72 Fic/DOC family Como_LCP PF02247.16 373 pCP014743_00102 - 133 0.056 12.0 0.1 1 1 7.2e-06 0.065 11.8 0.1 238 302 51 116 35 129 0.88 Large coat protein DHHA1 PF02272.19 138 pCP014743_00103 - 189 0.18 12.2 1.6 1 1 2e-05 0.37 11.2 1.6 15 92 36 117 22 129 0.83 DHHA1 domain DUF3825 PF12873.7 239 pCP014743_00104 - 335 2.2e-28 99.3 0.4 1 1 1.9e-32 3.4e-28 98.7 0.4 1 239 106 330 106 330 0.86 Domain of unknown function (DUF3825) DUF447 PF04289.12 176 pCP014743_00105 - 130 0.029 14.1 0.1 1 1 7.7e-06 0.046 13.5 0.1 42 111 21 87 19 96 0.85 Protein of unknown function (DUF447) WH1 PF00568.23 111 pCP014743_00105 - 130 0.04 13.9 0.3 1 1 1e-05 0.063 13.2 0.3 9 80 28 98 20 106 0.84 WH1 domain Cob_adeno_trans PF01923.18 164 pCP014743_00105 - 130 0.045 13.9 0.1 1 1 9.9e-06 0.059 13.5 0.1 25 104 37 127 32 130 0.79 Cobalamin adenosyltransferase IMS_C PF11799.8 118 pCP014743_00107 - 127 0.00012 22.7 0.0 1 1 2.2e-08 0.00019 22.1 0.0 59 111 11 62 3 67 0.88 impB/mucB/samB family C-terminal domain Patched PF02460.18 811 pCP014743_00107 - 127 0.024 12.8 0.2 1 1 3.1e-06 0.027 12.5 0.2 3 75 52 122 50 126 0.91 Patched family IMS PF00817.20 150 pCP014743_00109 - 220 1.5e-25 89.9 0.2 1 1 2.2e-29 4e-25 88.6 0.2 1 149 10 192 10 193 0.86 impB/mucB/samB family CooC_C PF15976.5 93 pCP014743_00110 - 53 0.015 15.3 0.0 1 1 1.8e-06 0.016 15.2 0.0 12 46 5 39 1 43 0.89 CS1-pili formation C-terminal PemK_toxin PF02452.17 111 pCP014743_00110 - 53 0.04 14.3 0.0 1 1 5.3e-06 0.048 14.1 0.0 81 108 2 29 1 32 0.91 PemK-like, MazF-like toxin of type II toxin-antitoxin system HTH_3 PF01381.22 55 pCP014743_00111 - 44 3.7e-07 30.1 0.0 1 1 4.6e-10 4.1e-07 30.0 0.0 1 36 9 43 9 44 0.94 Helix-turn-helix HTH_26 PF13443.6 63 pCP014743_00111 - 44 0.00017 21.9 0.0 1 1 2.1e-07 0.00019 21.8 0.0 2 35 9 42 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 pCP014743_00111 - 44 0.00074 19.0 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 65 pCP014743_00111 - 44 0.0012 18.7 0.0 1 1 1.4e-06 0.0013 18.6 0.0 1 32 9 41 9 44 0.81 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_19 PF12844.7 65 pCP014743_00111 - 44 0.0012 18.8 0.0 1 1 1.5e-06 0.0013 18.7 0.0 4 37 9 42 7 44 0.90 Helix-turn-helix domain HTH_23 PF13384.6 50 pCP014743_00111 - 44 0.002 17.8 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 pCP014743_00111 - 44 0.0038 17.3 0.3 1 1 6e-06 0.0054 16.8 0.3 25 46 1 22 1 40 0.90 ENT domain HTH_31 PF13560.6 64 pCP014743_00111 - 44 0.0048 17.2 0.0 1 1 5.8e-06 0.0052 17.1 0.0 12 40 15 43 9 44 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 pCP014743_00111 - 44 0.0094 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 pCP014743_00111 - 44 0.0099 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 pCP014743_00111 - 44 0.013 14.8 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 pCP014743_00111 - 44 0.02 14.8 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 pCP014743_00111 - 44 0.021 14.6 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP014743_00111 - 44 0.028 14.5 0.0 1 1 3.5e-05 0.032 14.3 0.0 3 33 9 38 7 42 0.84 Bacteriophage CI repressor helix-turn-helix domain HTH_AsnC-type PF13404.6 42 pCP014743_00111 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 51 pCP014743_00111 - 44 0.031 14.5 0.0 1 2 0.02 18 5.6 0.0 4 16 9 21 9 25 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 pCP014743_00111 - 44 0.031 14.5 0.0 2 2 0.0034 3 8.1 0.0 6 28 22 43 19 44 0.83 Helix-turn-helix domain Sigma70_r4 PF04545.16 50 pCP014743_00111 - 44 0.035 13.6 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 MerR PF00376.23 38 pCP014743_00111 - 44 0.08 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 pCP014743_00111 - 44 0.08 12.7 0.0 2 2 0.0096 8.6 6.2 0.0 4 18 22 36 21 43 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 pCP014743_00111 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 pCP014743_00111 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain DUF5601 PF18151.1 65 pCP014743_00113 - 133 0.0084 16.4 0.4 1 1 1.8e-06 0.016 15.5 0.4 12 55 44 89 29 90 0.86 Domain of unknown function (DUF5601) IFP_35_N PF07334.13 76 pCP014743_00113 - 133 0.14 12.2 4.9 1 3 0.0049 44 4.2 0.0 57 72 5 20 3 23 0.89 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 pCP014743_00113 - 133 0.14 12.2 4.9 2 3 0.15 1.3e+03 -0.5 0.1 1 20 42 61 29 73 0.74 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 pCP014743_00113 - 133 0.14 12.2 4.9 3 3 0.00022 2 8.5 0.4 6 28 97 119 90 126 0.88 Interferon-induced 35 kDa protein (IFP 35) N-terminus HSBP1 PF06825.12 51 pCP014743_00115 - 126 0.025 14.4 0.1 1 1 9.8e-06 0.044 13.6 0.1 14 43 65 94 61 98 0.87 Heat shock factor binding protein 1 CCDC-167 PF15188.6 84 pCP014743_00115 - 126 0.026 14.9 0.3 1 1 8.7e-06 0.039 14.3 0.3 36 79 48 108 20 110 0.72 Coiled-coil domain-containing protein 167 DUF3450 PF11932.8 241 pCP014743_00115 - 126 0.11 11.8 0.2 1 1 2.9e-05 0.13 11.6 0.2 36 105 35 104 19 112 0.82 Protein of unknown function (DUF3450) DUF4164 PF13747.6 89 pCP014743_00115 - 126 0.11 12.8 0.3 1 1 5.3e-05 0.24 11.7 0.1 13 42 65 95 60 98 0.89 Domain of unknown function (DUF4164) Phage_NinH PF06322.11 60 pCP014743_00116 - 47 0.1 12.5 0.2 1 1 7e-06 0.13 12.2 0.2 36 56 26 46 21 47 0.90 Phage NinH protein WGR PF05406.15 80 pCP014743_00120 - 75 4.2e-07 29.9 0.3 1 1 5.5e-11 4.9e-07 29.7 0.3 3 73 4 74 2 75 0.86 WGR domain Cadherin_pro PF08758.11 90 pCP014743_00120 - 75 0.035 14.3 0.0 1 1 4.8e-06 0.043 14.0 0.0 15 44 26 55 12 62 0.80 Cadherin prodomain like FlaC_arch PF05377.11 55 pCP014743_00121 - 76 0.0068 16.8 1.5 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pCP014743_00121 - 76 0.0068 16.8 1.5 2 2 3.8e-07 0.0068 16.8 1.5 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) Phage_integrase PF00589.22 172 pCP014743_00122 - 312 4.9e-24 85.0 0.5 1 1 3.2e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 pCP014743_00122 - 312 1.2e-05 25.5 4.2 1 2 1.5e-08 3.9e-05 23.9 1.8 1 79 16 99 16 102 0.92 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pCP014743_00122 - 312 1.2e-05 25.5 4.2 2 2 4 1e+04 -3.1 0.0 38 54 125 141 115 151 0.53 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP014743_00122 - 312 0.00017 21.8 4.6 1 3 6.8e-08 0.00017 21.8 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP014743_00122 - 312 0.00017 21.8 4.6 2 3 1.1 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP014743_00122 - 312 0.00017 21.8 4.6 3 3 2.1 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 85 pCP014743_00122 - 312 0.0026 18.2 8.9 1 3 0.00099 2.5 8.6 0.3 35 80 5 49 2 53 0.86 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pCP014743_00122 - 312 0.0026 18.2 8.9 2 3 3.4e-06 0.0086 16.5 5.3 2 79 16 101 15 104 0.90 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pCP014743_00122 - 312 0.0026 18.2 8.9 3 3 2 5.2e+03 -2.0 0.1 8 22 285 299 281 302 0.77 Phage integrase, N-terminal SAM-like domain Phyto-Amp PF15438.6 195 pCP014743_00122 - 312 0.0092 15.8 0.3 1 1 6.5e-06 0.017 15.0 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma Phage_int_SAM_3 PF14659.6 58 pCP014743_00122 - 312 0.027 14.7 3.2 1 1 4.2e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain YbjN PF10722.9 127 pCP014743_00122 - 312 0.029 14.4 0.3 1 2 0.00055 1.4 9.0 0.1 38 77 96 135 91 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 pCP014743_00122 - 312 0.029 14.4 0.3 2 2 0.047 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator Prok-TraM PF09228.10 102 pCP014745_00001 - 298 0.085 13.2 0.0 1 1 2e-05 0.18 12.2 0.0 13 93 35 115 24 120 0.89 Prokaryotic Transcriptional repressor TraM Flu_B_M2 PF04772.12 109 pCP014745_00001 - 298 3 8.1 11.1 1 3 2e-05 0.18 12.0 0.3 43 102 80 139 62 142 0.90 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 pCP014745_00001 - 298 3 8.1 11.1 2 3 0.017 1.5e+02 2.6 2.9 26 87 134 195 133 210 0.87 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 pCP014745_00001 - 298 3 8.1 11.1 3 3 0.26 2.3e+03 -1.2 0.0 73 104 235 266 227 270 0.68 Influenza B matrix protein 2 (BM2) TagA PF12561.8 99 pCP014745_00003 - 210 1.1 9.7 3.4 1 2 0.00094 17 5.9 0.7 31 90 68 127 55 133 0.81 ToxR activated gene A lipoprotein domain TagA PF12561.8 99 pCP014745_00003 - 210 1.1 9.7 3.4 2 2 0.0027 49 4.4 0.1 63 88 184 209 166 210 0.84 ToxR activated gene A lipoprotein domain DUF4299 PF14132.6 301 pCP014745_00004 - 116 3.2e-08 33.4 0.1 1 1 6.2e-12 3.7e-08 33.2 0.1 189 300 12 110 5 111 0.85 Domain of unknown function (DUF4299) A2M PF00207.22 92 pCP014745_00004 - 116 0.11 12.3 0.0 1 1 2.6e-05 0.16 11.9 0.0 17 56 49 89 36 94 0.81 Alpha-2-macroglobulin family XPG_I PF00867.18 94 pCP014745_00004 - 116 0.13 12.7 0.0 1 1 2.6e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region AHH PF14412.6 114 pCP014745_00006 - 259 5.3e-16 58.7 1.4 1 1 1.1e-19 9.6e-16 57.9 1.4 10 113 155 241 148 242 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH RRF PF01765.19 162 pCP014745_00006 - 259 0.12 12.3 4.7 1 2 1.8e-05 0.16 11.9 0.1 124 153 163 193 112 199 0.86 Ribosome recycling factor RRF PF01765.19 162 pCP014745_00006 - 259 0.12 12.3 4.7 2 2 0.025 2.3e+02 1.7 1.1 121 146 215 242 207 256 0.69 Ribosome recycling factor Glyco_hydro_59 PF02057.15 294 pCP014745_00008 - 287 0.022 14.0 1.2 1 1 2.4e-06 0.043 13.1 1.2 109 165 106 159 99 178 0.87 Glycosyl hydrolase family 59 DivIC PF04977.15 80 pCP014745_00009 - 1411 0.0039 16.9 0.2 1 4 4.3e-07 0.0039 16.9 0.2 23 78 35 90 31 92 0.94 Septum formation initiator DivIC PF04977.15 80 pCP014745_00009 - 1411 0.0039 16.9 0.2 2 4 0.92 8.3e+03 -3.3 3.7 24 50 259 285 248 295 0.58 Septum formation initiator DivIC PF04977.15 80 pCP014745_00009 - 1411 0.0039 16.9 0.2 3 4 2 1.8e+04 -4.7 2.3 21 40 439 458 432 477 0.59 Septum formation initiator DivIC PF04977.15 80 pCP014745_00009 - 1411 0.0039 16.9 0.2 4 4 2 1.8e+04 -6.5 2.6 25 44 888 907 885 912 0.48 Septum formation initiator HTH_48 PF17906.1 50 pCP014745_00009 - 1411 0.043 13.9 0.2 1 2 0.00062 5.5 7.2 0.0 11 30 194 213 193 218 0.93 HTH domain in Mos1 transposase HTH_48 PF17906.1 50 pCP014745_00009 - 1411 0.043 13.9 0.2 2 2 0.0098 88 3.3 0.1 7 26 1237 1256 1234 1275 0.87 HTH domain in Mos1 transposase Nucleoside_tran PF01733.18 309 pCP014745_00011 - 289 0.15 11.4 2.7 1 1 4.6e-05 0.28 10.5 2.7 71 192 10 129 3 134 0.66 Nucleoside transporter Turandot PF07240.11 81 pCP014745_00011 - 289 0.19 11.7 1.3 1 2 0.75 4.5e+03 -2.3 0.0 17 40 25 48 22 54 0.61 Stress-inducible humoral factor Turandot Turandot PF07240.11 81 pCP014745_00011 - 289 0.19 11.7 1.3 2 2 8e-05 0.48 10.4 0.6 2 28 247 273 246 288 0.77 Stress-inducible humoral factor Turandot Sigma70_ner PF04546.13 204 pCP014745_00011 - 289 0.2 11.5 6.4 1 2 0.03 1.8e+02 1.9 0.4 16 78 33 83 20 120 0.46 Sigma-70, non-essential region Sigma70_ner PF04546.13 204 pCP014745_00011 - 289 0.2 11.5 6.4 2 2 1.7e-05 0.1 12.4 1.0 88 125 238 276 228 285 0.90 Sigma-70, non-essential region Rapsyn_N PF10579.9 80 pCP014745_00013 - 358 0.53 10.4 3.8 1 3 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 pCP014745_00013 - 358 0.53 10.4 3.8 2 3 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 pCP014745_00013 - 358 0.53 10.4 3.8 3 3 0.24 4.3e+03 -2.1 0.1 19 34 340 355 329 356 0.74 Rapsyn N-terminal myristoylation and linker region DUF2768 PF10966.8 58 pCP014745_00014 - 114 0.0086 16.5 0.2 1 2 1.9e-06 0.0086 16.5 0.2 22 57 37 72 35 72 0.95 Protein of unknown function (DUF2768) DUF2768 PF10966.8 58 pCP014745_00014 - 114 0.0086 16.5 0.2 2 2 0.4 1.8e+03 -0.5 1.3 6 13 96 103 79 108 0.53 Protein of unknown function (DUF2768) DiS_P_DiS PF06750.13 84 pCP014745_00014 - 114 0.027 14.6 0.4 1 1 1.2e-05 0.054 13.6 0.4 29 73 6 50 2 59 0.84 Bacterial Peptidase A24 N-terminal domain DZR PF12773.7 49 pCP014745_00014 - 114 0.028 14.4 0.3 1 1 8.3e-06 0.037 14.0 0.3 13 37 5 38 2 45 0.88 Double zinc ribbon zinc_ribbon_4 PF13717.6 36 pCP014745_00014 - 114 0.14 12.1 4.3 1 2 0.072 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP014745_00014 - 114 0.14 12.1 4.3 2 2 3.5e-05 0.16 12.0 0.3 3 16 30 43 29 47 0.86 zinc-ribbon domain Importin_rep PF18773.1 40 pCP014745_00015 - 260 0.018 14.7 0.1 1 1 6.7e-06 0.04 13.6 0.1 16 27 231 242 226 249 0.90 Importin 13 repeat DUF327 PF03885.13 143 pCP014745_00015 - 260 0.075 13.0 0.1 1 3 0.41 2.5e+03 -1.7 0.1 97 109 43 55 22 76 0.50 Protein of unknown function (DUF327) DUF327 PF03885.13 143 pCP014745_00015 - 260 0.075 13.0 0.1 2 3 0.96 5.7e+03 -2.8 0.0 22 24 140 142 116 165 0.49 Protein of unknown function (DUF327) DUF327 PF03885.13 143 pCP014745_00015 - 260 0.075 13.0 0.1 3 3 1.3e-05 0.075 13.0 0.1 48 85 217 254 191 258 0.89 Protein of unknown function (DUF327) BLOC1_2 PF10046.9 96 pCP014745_00015 - 260 0.94 9.8 4.4 1 3 2.1 1.2e+04 -3.4 0.1 38 61 48 71 47 73 0.65 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP014745_00015 - 260 0.94 9.8 4.4 2 3 4.3e-05 0.26 11.6 0.4 22 75 115 172 110 179 0.87 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP014745_00015 - 260 0.94 9.8 4.4 3 3 0.81 4.8e+03 -2.1 0.0 70 79 245 254 228 258 0.43 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GPD PF05954.11 304 pCP014745_00016 - 833 5.9e-18 65.2 0.0 1 1 1e-21 9.4e-18 64.5 0.0 22 281 73 360 45 376 0.76 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 pCP014745_00016 - 833 0.11 12.2 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 pCP014745_00016 - 833 0.11 12.2 0.0 2 2 0.00042 3.8 7.2 0.0 19 49 456 486 447 513 0.81 TCL1/MTCP1 family T6SS_TssG PF06996.11 299 pCP014745_00017 - 302 3.5e-47 161.1 0.0 1 1 2.2e-51 3.9e-47 160.9 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG T6SS_TssF PF05947.12 603 pCP014745_00018 - 573 1.6e-110 370.4 0.0 1 1 1e-114 1.8e-110 370.3 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF GPW_gp25 PF04965.14 95 pCP014745_00019 - 130 2.2e-09 36.9 0.0 1 1 4.8e-13 2.9e-09 36.6 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 pCP014745_00019 - 130 0.021 14.7 0.3 1 1 4.5e-06 0.027 14.3 0.3 94 159 21 87 5 92 0.87 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 pCP014745_00019 - 130 0.072 12.6 0.2 1 2 2.9e-05 0.17 11.3 0.1 82 121 5 46 1 64 0.84 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 pCP014745_00019 - 130 0.072 12.6 0.2 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 422 pCP014745_00020 - 484 1.2e-169 564.6 0.0 1 1 1.6e-173 1.4e-169 564.4 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 pCP014745_00020 - 484 0.33 11.0 2.6 1 4 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pCP014745_00020 - 484 0.33 11.0 2.6 2 4 1.5 1.4e+04 -3.9 0.0 103 117 130 143 127 147 0.66 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pCP014745_00020 - 484 0.33 11.0 2.6 3 4 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pCP014745_00020 - 484 0.33 11.0 2.6 4 4 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 155 pCP014745_00021 - 161 6.4e-52 175.5 3.9 1 1 8e-56 7.2e-52 175.3 3.9 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 pCP014745_00021 - 161 0.14 10.8 0.0 1 1 1.8e-05 0.16 10.5 0.0 171 227 55 111 40 127 0.90 Chitin synthase T6SS_VasJ PF16989.5 255 pCP014745_00022 - 415 1.2e-12 47.9 0.0 1 1 3.9e-16 1.7e-12 47.3 0.0 3 153 176 323 174 408 0.84 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 pCP014745_00022 - 415 0.00014 22.0 0.2 1 2 1.8e-07 0.0008 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 pCP014745_00022 - 415 0.00014 22.0 0.2 2 2 0.31 1.4e+03 -0.6 0.0 47 71 185 209 162 212 0.83 ImpA, N-terminal, type VI secretion system PX PF00787.24 113 pCP014745_00022 - 415 0.074 13.0 14.5 1 3 0.00025 1.1 9.2 2.4 31 111 33 130 20 131 0.67 PX domain PX PF00787.24 113 pCP014745_00022 - 415 0.074 13.0 14.5 2 3 0.00084 3.8 7.5 0.2 16 112 155 275 132 276 0.68 PX domain PX PF00787.24 113 pCP014745_00022 - 415 0.074 13.0 14.5 3 3 0.052 2.3e+02 1.8 0.7 22 97 316 396 296 404 0.70 PX domain TetR_C_24 PF17932.1 114 pCP014745_00022 - 415 0.19 12.0 0.0 1 1 8.8e-05 0.4 11.0 0.0 20 68 71 119 62 132 0.87 Tetracyclin repressor-like, C-terminal domain T6SS-SciN PF12790.7 120 pCP014745_00023 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 428 pCP014745_00024 - 465 4.7e-112 374.8 0.0 1 1 3.1e-116 5.5e-112 374.6 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 205 pCP014745_00025 - 257 3.6e-35 121.5 0.0 1 1 2.3e-39 4.2e-35 121.4 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_HCP PF05638.12 129 pCP014745_00026 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 259 pCP014745_00027 - 1175 6.2e-41 140.5 0.0 1 1 4.1e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 pCP014745_00027 - 1175 5.9e-40 137.1 0.5 1 1 4.1e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 pCP014745_00027 - 1175 8.2e-27 94.5 2.1 1 1 4.9e-30 1.3e-26 93.9 2.1 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 pCP014745_00027 - 1175 0.0003 20.7 0.0 1 2 8.9e-06 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 pCP014745_00027 - 1175 0.0003 20.7 0.0 2 2 0.047 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 pCP014745_00027 - 1175 0.0011 19.0 0.1 1 2 1.7e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 pCP014745_00027 - 1175 0.0011 19.0 0.1 2 2 4.1 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 pCP014745_00027 - 1175 0.0041 16.8 4.8 1 3 1.4e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 pCP014745_00027 - 1175 0.0041 16.8 4.8 2 3 0.13 3.4e+02 0.8 0.0 41 77 451 487 432 583 0.80 O-Antigen ligase Wzy_C PF04932.15 155 pCP014745_00027 - 1175 0.0041 16.8 4.8 3 3 0.076 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 pCP014745_00027 - 1175 0.055 13.2 0.1 1 2 0.00017 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pCP014745_00027 - 1175 0.055 13.2 0.1 2 2 0.76 1.9e+03 -1.3 0.0 22 37 841 856 831 870 0.75 P-loop containing region of AAA domain FHA PF00498.26 69 pCP014745_00028 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 pCP014745_00028 - 299 0.0007 19.9 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 pCP014745_00028 - 299 0.0007 19.9 0.0 2 2 0.23 1.4e+03 -0.3 0.0 31 57 199 225 198 231 0.89 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 pCP014745_00028 - 299 0.05 14.0 3.1 1 2 0.044 2.6e+02 2.1 0.1 18 58 107 147 105 150 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 pCP014745_00028 - 299 0.05 14.0 3.1 2 2 7.4e-05 0.44 11.0 0.9 21 82 151 212 146 218 0.92 Ferredoxin-fold anticodon binding domain DUF3870 PF12986.7 94 pCP014745_00029 - 433 0.11 12.8 0.0 1 1 1.4e-05 0.24 11.6 0.0 11 62 4 58 1 70 0.79 Domain of unknown function (DUF3870) Syntaxin-6_N PF09177.11 99 pCP014745_00030 - 1596 6.8 7.3 10.5 1 3 0.038 6.8e+02 0.9 0.2 41 75 300 336 280 344 0.81 Syntaxin 6, N-terminal Syntaxin-6_N PF09177.11 99 pCP014745_00030 - 1596 6.8 7.3 10.5 2 3 0.0024 44 4.7 3.3 2 97 494 597 493 599 0.65 Syntaxin 6, N-terminal Syntaxin-6_N PF09177.11 99 pCP014745_00030 - 1596 6.8 7.3 10.5 3 3 0.01 1.8e+02 2.8 0.0 21 75 624 675 608 679 0.79 Syntaxin 6, N-terminal DUF2459 PF09601.10 171 pCP014745_00031 - 432 0.053 13.3 1.1 1 2 1.3e-05 0.12 12.2 0.1 87 163 131 199 119 201 0.72 Protein of unknown function (DUF2459) DUF2459 PF09601.10 171 pCP014745_00031 - 432 0.053 13.3 1.1 2 2 0.32 2.8e+03 -2.1 0.1 143 143 289 289 239 346 0.63 Protein of unknown function (DUF2459) BLOC1_2 PF10046.9 96 pCP014745_00031 - 432 0.1 12.9 2.0 1 2 2.8e-05 0.25 11.7 1.0 44 95 263 314 260 315 0.94 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP014745_00031 - 432 0.1 12.9 2.0 2 2 2 1.8e+04 -4.1 0.0 20 30 349 359 345 364 0.58 Biogenesis of lysosome-related organelles complex-1 subunit 2 Put_DNA-bind_N PF06971.13 49 pCP014745_00032 - 141 0.016 15.2 0.0 1 1 1.5e-06 0.027 14.5 0.0 11 34 4 27 3 30 0.95 Putative DNA-binding protein N-terminus Toprim_3 PF13362.6 95 pCP014745_00033 - 409 2.4e-08 34.2 0.1 1 2 1.4 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pCP014745_00033 - 409 2.4e-08 34.2 0.1 2 2 1.4e-11 6.4e-08 32.9 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pCP014745_00033 - 409 0.017 15.4 0.2 1 2 0.024 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pCP014745_00033 - 409 0.017 15.4 0.2 2 2 0.00027 1.2 9.4 0.0 15 83 283 359 277 382 0.82 Retrotransposon gag protein DUF2315 PF10231.9 123 pCP014745_00033 - 409 0.023 14.8 6.8 1 3 0.00028 1.3 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP014745_00033 - 409 0.023 14.8 6.8 2 3 0.0016 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP014745_00033 - 409 0.023 14.8 6.8 3 3 1.3 5.9e+03 -2.7 0.0 20 90 355 373 339 384 0.54 Apoptogenic protein 1 5_3_exonuc PF01367.20 97 pCP014745_00033 - 409 0.25 12.0 1.7 1 2 0.62 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP014745_00033 - 409 0.25 12.0 1.7 2 2 0.00012 0.53 10.9 0.2 15 81 322 384 321 401 0.72 5'-3' exonuclease, C-terminal SAM fold DUF2400 PF09674.10 227 pCP014745_00034 - 217 0.26 11.3 4.3 1 2 0.0086 1.5e+02 2.2 0.1 38 73 49 84 41 93 0.81 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pCP014745_00034 - 217 0.26 11.3 4.3 2 2 3.1e-05 0.56 10.2 0.9 25 111 96 182 91 210 0.74 Protein of unknown function (DUF2400) NYN PF01936.18 147 pCP014745_00035 - 180 1.1e-09 39.0 0.0 1 1 2e-13 1.2e-09 38.8 0.0 60 123 74 146 15 161 0.80 NYN domain Peroxin-22 PF12827.7 113 pCP014745_00035 - 180 0.004 17.0 0.6 1 1 1.3e-06 0.0079 16.1 0.6 25 105 81 162 46 169 0.76 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 pCP014745_00035 - 180 0.029 15.0 0.0 1 1 8.3e-06 0.049 14.2 0.0 61 103 100 142 77 142 0.87 PIN domain RHH_7 PF16777.5 74 pCP014745_00037 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 pCP014745_00037 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal AAA_31 PF13614.6 177 pCP014745_00038 - 186 4.8e-05 23.3 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP014745_00038 - 186 4.8e-05 23.3 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP014745_00038 - 186 0.00043 20.3 0.7 1 1 1.2e-06 0.0043 17.1 0.7 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP014745_00038 - 186 0.036 13.5 0.0 1 1 1.3e-05 0.048 13.1 0.0 17 109 69 171 61 180 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP014745_00038 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP014745_00038 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pCP014745_00039 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP014745_00039 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 pCP014745_00040 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP014745_00040 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP014745_00040 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP014745_00040 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP014745_00040 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP014745_00040 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 pCP014745_00041 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP014745_00041 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP014745_00041 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pCP014745_00041 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pCP014745_00041 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pCP014745_00041 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP014745_00041 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP014745_00041 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP014745_00041 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain GTP_EFTU PF00009.27 194 pCP014745_00042 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP014745_00042 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP014745_00042 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP014745_00042 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP014745_00042 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP014745_00042 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP014745_00042 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP014745_00042 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP014745_00042 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP014745_00042 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 pCP014745_00044 - 473 5.2e-05 23.2 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP014745_00044 - 473 0.022 14.7 4.0 1 2 0.14 1.2e+03 -0.7 0.2 12 60 218 271 211 299 0.70 Intein splicing domain Intein_splicing PF14890.6 134 pCP014745_00044 - 473 0.022 14.7 4.0 2 2 3.6e-06 0.032 14.2 1.5 37 125 311 444 264 453 0.74 Intein splicing domain Topoisom_bac PF01131.20 413 pCP014745_00045 - 730 1.2e-96 324.2 8.2 1 1 1.5e-99 1.7e-96 323.8 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP014745_00045 - 730 1.8e-12 47.4 0.4 1 2 9.2e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP014745_00045 - 730 1.8e-12 47.4 0.4 2 2 3.9 4.4e+03 -2.0 0.0 38 56 537 556 489 567 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP014745_00045 - 730 1.7e-08 34.1 15.1 1 2 3.7e-09 4.1e-06 26.5 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP014745_00045 - 730 1.7e-08 34.1 15.1 2 2 8.7e-05 0.098 12.5 2.4 3 27 683 710 681 719 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP014745_00045 - 730 1e-05 25.7 2.3 1 3 8.3 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP014745_00045 - 730 1e-05 25.7 2.3 2 3 0.00037 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP014745_00045 - 730 1e-05 25.7 2.3 3 3 3.8e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP014745_00045 - 730 0.012 15.7 1.3 1 2 0.0077 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP014745_00045 - 730 0.012 15.7 1.3 2 2 0.0045 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP014745_00045 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP014745_00045 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 pCP014745_00045 - 730 0.056 14.3 2.8 1 2 0.007 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP014745_00045 - 730 0.056 14.3 2.8 2 2 0.021 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP014745_00045 - 730 0.087 12.3 2.7 1 2 0.003 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP014745_00045 - 730 0.087 12.3 2.7 2 2 0.02 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 pCP014745_00045 - 730 0.088 13.1 4.5 1 2 0.00079 0.88 9.9 3.7 5 64 627 689 623 696 0.71 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP014745_00045 - 730 0.088 13.1 4.5 2 2 0.0023 2.6 8.4 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain EF-hand_8 PF13833.6 55 pCP014745_00045 - 730 0.088 12.7 0.0 1 1 0.00027 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 pCP014745_00045 - 730 0.46 10.7 3.3 1 3 1.7 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP014745_00045 - 730 0.46 10.7 3.3 2 3 5 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP014745_00045 - 730 0.46 10.7 3.3 3 3 0.00076 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP014745_00045 - 730 0.55 9.9 3.0 1 2 0.03 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP014745_00045 - 730 0.55 9.9 3.0 2 2 0.011 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP014745_00045 - 730 0.64 10.0 3.8 1 2 0.0041 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP014745_00045 - 730 0.64 10.0 3.8 2 2 0.13 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP014745_00045 - 730 0.75 9.9 3.8 1 2 0.1 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP014745_00045 - 730 0.75 9.9 3.8 2 2 0.0039 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP014745_00045 - 730 6.9 6.5 8.0 1 2 0.046 51 3.7 2.5 15 31 629 645 627 660 0.79 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP014745_00045 - 730 6.9 6.5 8.0 2 2 0.016 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP014745_00045 - 730 8.4 6.4 6.5 1 2 0.01 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP014745_00045 - 730 8.4 6.4 6.5 2 2 0.088 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 pCP014745_00046 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP014745_00046 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 pCP014745_00047 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCP014745_00047 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP014745_00047 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP014745_00047 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP014745_00047 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP014745_00047 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 pCP014745_00048 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 pCP014745_00049 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pCP014745_00049 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pCP014745_00049 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP014745_00049 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP014745_00049 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 pCP014745_00050 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP014745_00050 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP014745_00050 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP014745_00050 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP014745_00050 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 pCP014745_00051 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP014745_00051 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP014745_00051 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP014745_00051 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP014745_00051 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP014745_00051 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP014745_00051 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP014745_00051 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP014745_00051 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP014745_00051 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP014745_00051 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP014745_00051 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP014745_00051 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP014745_00051 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP014745_00051 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP014745_00051 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP014745_00051 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP014745_00051 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP014745_00051 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP014745_00051 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP014745_00051 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP014745_00051 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP014745_00051 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP014745_00051 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP014745_00051 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP014745_00051 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP014745_00051 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP014745_00051 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP014745_00051 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP014745_00051 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP014745_00051 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP014745_00051 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 pCP014745_00052 - 390 3.1e-48 164.1 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 193 374 193 374 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP014745_00052 - 390 0.028 13.5 0.1 1 1 4.8e-06 0.043 12.9 0.1 31 81 321 371 304 376 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 pCP014745_00053 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP014745_00053 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP014745_00053 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 pCP014745_00054 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP014745_00054 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 pCP014745_00055 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP014745_00055 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 pCP014745_00056 - 332 2.7e-31 109.0 32.0 1 2 6e-35 2.7e-31 109.0 32.0 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP014745_00056 - 332 2.7e-31 109.0 32.0 2 2 0.23 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein DUF3176 PF11374.8 107 pCP014745_00056 - 332 0.088 13.0 0.5 1 4 0.39 1.8e+03 -0.8 0.0 19 32 30 43 8 58 0.73 Protein of unknown function (DUF3176) DUF3176 PF11374.8 107 pCP014745_00056 - 332 0.088 13.0 0.5 2 4 2e-05 0.088 13.0 0.5 62 105 119 166 106 168 0.78 Protein of unknown function (DUF3176) DUF3176 PF11374.8 107 pCP014745_00056 - 332 0.088 13.0 0.5 3 4 0.62 2.8e+03 -1.5 0.2 85 106 195 216 176 217 0.49 Protein of unknown function (DUF3176) DUF3176 PF11374.8 107 pCP014745_00056 - 332 0.088 13.0 0.5 4 4 1.5 6.6e+03 -2.7 0.1 86 94 240 248 219 256 0.54 Protein of unknown function (DUF3176) T_cell_tran_alt PF15128.6 92 pCP014745_00056 - 332 0.18 11.6 1.6 1 2 0.1 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP014745_00056 - 332 0.18 11.6 1.6 2 2 0.00023 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP014745_00056 - 332 1.7 9.7 5.2 1 1 0.00061 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 pCP014745_00057 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP014745_00057 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP014745_00057 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP014745_00057 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP014745_00057 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pCP014745_00057 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pCP014745_00057 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pCP014745_00057 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP014745_00057 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 pCP014745_00057 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pCP014745_00057 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pCP014745_00057 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pCP014745_00057 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 pCP014745_00057 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pCP014745_00057 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain IF2_N PF04760.15 54 pCP014745_00058 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP014745_00058 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP014745_00058 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP014745_00058 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP014745_00058 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP014745_00058 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP014745_00058 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 pCP014745_00059 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3251 PF11622.8 165 pCP014745_00060 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pCP014745_00060 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pCP014745_00060 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pCP014745_00060 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP014745_00060 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP014745_00060 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pCP014745_00060 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP014745_00060 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP014745_00060 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pCP014745_00060 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pCP014745_00060 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pCP014745_00060 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP014745_00060 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP014745_00060 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) Phage_pRha PF09669.10 88 pCP014745_00061 - 185 6.6e-30 103.5 0.0 1 1 1.7e-33 1e-29 102.9 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCP014745_00061 - 185 0.0051 16.9 0.0 1 1 1.8e-06 0.011 15.9 0.0 23 90 27 94 23 96 0.94 Uncharacterized protein conserved in archaea (DUF2250) DUF5512 PF17631.2 139 pCP014745_00061 - 185 0.094 12.7 0.0 1 1 3.5e-05 0.21 11.6 0.0 77 131 80 130 61 134 0.85 Family of unknown function (DUF5512) CagE_TrbE_VirB PF03135.14 206 pCP014745_00062 - 922 4e-51 174.0 0.4 1 1 2e-54 9.1e-51 172.9 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP014745_00062 - 922 3.7e-21 75.1 1.1 1 1 1.4e-24 6.4e-21 74.4 1.1 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 pCP014745_00062 - 922 4.4e-07 29.2 0.5 1 1 2.2e-10 1e-06 28.0 0.5 23 320 547 845 535 859 0.73 AAA-like domain DUF87 PF01935.17 227 pCP014745_00062 - 922 0.0092 16.1 2.9 1 5 0.46 2e+03 -1.4 0.1 96 202 139 253 122 280 0.55 Helicase HerA, central domain DUF87 PF01935.17 227 pCP014745_00062 - 922 0.0092 16.1 2.9 2 5 0.95 4.3e+03 -2.4 0.0 87 124 263 298 245 301 0.78 Helicase HerA, central domain DUF87 PF01935.17 227 pCP014745_00062 - 922 0.0092 16.1 2.9 3 5 0.00038 1.7 8.7 0.0 26 49 548 571 539 591 0.86 Helicase HerA, central domain DUF87 PF01935.17 227 pCP014745_00062 - 922 0.0092 16.1 2.9 4 5 0.0074 33 4.5 0.2 100 163 638 700 625 733 0.77 Helicase HerA, central domain DUF87 PF01935.17 227 pCP014745_00062 - 922 0.0092 16.1 2.9 5 5 0.55 2.5e+03 -1.7 0.0 43 108 751 811 747 849 0.65 Helicase HerA, central domain TrbC PF04956.13 99 pCP014745_00063 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP014745_00063 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pCP014745_00065 - 135 0.00056 20.0 0.0 1 1 8.6e-08 0.0015 18.6 0.0 5 53 8 71 5 106 0.81 CRISPR associated protein Cas2 Resolvase PF00239.21 146 pCP014745_00066 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP014745_00066 - 204 0.026 14.3 0.7 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP014745_00066 - 204 0.026 14.3 0.7 2 3 0.0016 9.6 6.1 0.0 2 36 117 152 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP014745_00066 - 204 0.026 14.3 0.7 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP014745_00066 - 204 0.05 13.6 4.8 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP014745_00066 - 204 0.05 13.6 4.8 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP014745_00066 - 204 0.05 13.6 4.8 3 3 0.018 1.1e+02 3.0 0.1 39 55 159 175 153 177 0.91 M protein trans-acting positive regulator (MGA) HTH domain AAA_25 PF13481.6 194 pCP014745_00067 - 597 1.6e-14 54.0 0.0 1 1 1.3e-17 3.3e-14 52.9 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP014745_00067 - 597 0.00038 19.9 0.0 1 2 7.2e-07 0.0018 17.6 0.0 16 117 30 136 23 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP014745_00067 - 597 0.00038 19.9 0.0 2 2 0.019 48 3.2 0.0 123 183 114 176 98 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP014745_00067 - 597 0.0023 17.7 0.0 1 2 5.7e-06 0.015 15.1 0.0 46 87 32 73 22 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP014745_00067 - 597 0.0023 17.7 0.0 2 2 0.5 1.3e+03 -1.0 0.0 99 118 111 130 102 168 0.67 IstB-like ATP binding protein ATPase PF06745.13 231 pCP014745_00067 - 597 0.0089 15.4 0.0 1 2 2.3e-05 0.058 12.7 0.0 16 70 30 83 23 120 0.90 KaiC ATPase PF06745.13 231 pCP014745_00067 - 597 0.0089 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pCP014745_00067 - 597 0.009 16.4 0.2 1 2 8.6e-05 0.22 11.9 0.0 2 105 37 166 36 176 0.67 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP014745_00067 - 597 0.009 16.4 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pCP014745_00067 - 597 0.16 12.0 1.6 1 1 0.00029 0.74 9.9 1.6 1 29 35 63 35 536 0.91 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pCP014745_00067 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP014745_00067 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP014745_00067 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) HicB_lk_antitox PF15919.5 123 pCP014745_00068 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system UBA_6 PF18039.1 42 pCP014745_00069 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 pCP014745_00069 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pCP014745_00069 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 pCP014745_00069 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region DUF4223 PF13978.6 54 pCP014745_00070 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pCP014745_00070 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pCP014745_00070 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 pCP014745_00071 - 408 2.5e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pCP014745_00071 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 pCP014745_00071 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pCP014745_00071 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP014745_00071 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF2400 PF09674.10 227 pCP014745_00072 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pCP014745_00072 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) HisK_sensor PF18698.1 126 pCP014745_00073 - 80 0.052 13.9 1.6 1 1 4e-06 0.072 13.5 1.6 29 81 8 59 3 79 0.84 Histidine kinase sensor domain SANT_DAMP1_like PF16282.5 80 pCP014745_00074 - 98 0.08 13.1 0.3 1 1 6.4e-06 0.11 12.6 0.3 6 47 5 46 3 88 0.87 SANT/Myb-like domain of DAMP1 Sds3 PF08598.11 218 pCP014745_00075 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pCP014745_00075 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP014745_00075 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pCP014745_00075 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP014745_00075 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 pCP014745_00076 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP014745_00076 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP014745_00076 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP014745_00076 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP014745_00076 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP014745_00076 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP014745_00076 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pCP014745_00076 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP014745_00076 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 pCP014745_00076 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP014745_00076 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain Relaxase PF03432.14 242 pCP014745_00077 - 462 5.1e-10 39.4 7.2 1 2 2.9e-14 5.1e-10 39.4 7.2 48 228 119 296 70 309 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP014745_00077 - 462 5.1e-10 39.4 7.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_19 PF12844.7 65 pCP014745_00078 - 314 1e-05 25.5 0.2 1 2 0.0055 7.1 6.7 0.0 11 31 9 29 1 42 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 pCP014745_00078 - 314 1e-05 25.5 0.2 2 2 8.1e-06 0.01 15.8 0.0 27 64 116 152 91 153 0.90 Helix-turn-helix domain HTH_3 PF01381.22 55 pCP014745_00078 - 314 5.4e-05 23.2 0.0 1 2 3.6e-07 0.00046 20.2 0.0 2 29 3 30 2 30 0.90 Helix-turn-helix HTH_3 PF01381.22 55 pCP014745_00078 - 314 5.4e-05 23.2 0.0 2 2 0.67 8.6e+02 0.1 0.0 26 55 118 147 107 147 0.85 Helix-turn-helix Phage_CI_repr PF07022.13 65 pCP014745_00078 - 314 0.0011 19.0 0.0 1 2 6.6e-05 0.084 13.0 0.0 11 49 10 47 2 50 0.77 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP014745_00078 - 314 0.0011 19.0 0.0 2 2 0.064 82 3.4 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 pCP014745_00078 - 314 0.0078 15.7 0.0 1 2 8.2e-05 0.11 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP014745_00078 - 314 0.0078 15.7 0.0 2 2 0.29 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 pCP014745_00078 - 314 0.015 15.4 0.0 1 1 2.9e-05 0.037 14.2 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 pCP014745_00078 - 314 0.016 15.0 0.1 1 2 5.1e-05 0.065 13.1 0.0 4 36 5 37 2 49 0.75 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 pCP014745_00078 - 314 0.016 15.0 0.1 2 2 2.5 3.2e+03 -1.9 0.1 38 47 290 299 289 300 0.87 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 pCP014745_00078 - 314 0.019 14.7 0.0 1 1 3.5e-05 0.045 13.6 0.0 16 37 7 30 1 36 0.86 Homeodomain-like domain Imm3 PF14425.6 119 pCP014745_00078 - 314 0.042 13.9 0.1 1 1 6.8e-05 0.087 12.9 0.1 33 113 26 104 2 109 0.75 Immunity protein Imm3 HTH_26 PF13443.6 63 pCP014745_00078 - 314 0.071 13.6 0.0 1 1 0.00012 0.16 12.4 0.0 3 30 3 30 1 38 0.88 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.7 51 pCP014745_00078 - 314 0.097 12.9 0.0 1 2 0.13 1.7e+02 2.5 0.0 5 16 3 14 2 16 0.90 Helix-turn-helix domain HTH_17 PF12728.7 51 pCP014745_00078 - 314 0.097 12.9 0.0 2 2 0.0011 1.4 9.2 0.0 5 27 14 36 11 42 0.83 Helix-turn-helix domain HTH_31 PF13560.6 64 pCP014745_00078 - 314 0.1 12.9 0.0 1 1 0.00016 0.2 12.0 0.0 12 33 8 29 2 40 0.88 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 pCP014745_00078 - 314 0.13 11.9 0.0 1 1 0.00027 0.35 10.6 0.0 25 46 9 30 5 30 0.93 Sigma-70, region 4 Phage_AlpA PF05930.12 51 pCP014745_00078 - 314 0.14 12.0 0.0 1 2 0.015 20 5.1 0.0 6 19 2 15 1 18 0.89 Prophage CP4-57 regulatory protein (AlpA) Phage_AlpA PF05930.12 51 pCP014745_00078 - 314 0.14 12.0 0.0 2 2 0.0031 4 7.3 0.0 5 23 12 30 11 35 0.88 Prophage CP4-57 regulatory protein (AlpA) HTH_Mga PF08280.11 60 pCP014745_00078 - 314 0.15 12.1 1.8 1 3 0.0044 5.6 7.1 0.1 21 37 11 27 4 30 0.89 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP014745_00078 - 314 0.15 12.1 1.8 2 3 0.065 83 3.3 0.0 25 59 41 75 32 76 0.80 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP014745_00078 - 314 0.15 12.1 1.8 3 3 9 1.2e+04 -3.5 0.0 46 50 94 98 86 105 0.47 M protein trans-acting positive regulator (MGA) HTH domain SNF2_N PF00176.23 350 pCP014745_00079 - 1931 1.4e-16 60.1 0.8 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1016 1272 934 1313 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP014745_00079 - 1931 1.4e-16 60.1 0.8 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP014745_00079 - 1931 1.4e-16 60.1 0.8 3 3 1.1 3.9e+03 -3.8 0.0 172 199 1878 1906 1859 1914 0.75 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP014745_00079 - 1931 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 648 691 638 783 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP014745_00079 - 1931 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 999 1211 998 1242 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP014745_00079 - 1931 4.9e-08 33.2 8.3 3 3 0.34 1.2e+03 -0.7 5.2 33 121 1797 1903 1746 1928 0.65 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP014745_00079 - 1931 9.4e-07 29.2 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1076 1104 1028 1108 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP014745_00079 - 1931 9.4e-07 29.2 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP014745_00079 - 1931 1.3e-05 25.0 2.0 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1003 1108 1002 1204 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP014745_00079 - 1931 1.3e-05 25.0 2.0 2 2 0.15 5.5e+02 0.2 0.1 120 143 1883 1908 1832 1928 0.67 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP014745_00079 - 1931 3e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 371 471 369 474 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP014745_00079 - 1931 3e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 660 699 644 718 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 pCP014745_00080 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 pCP014745_00081 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 pCP014745_00081 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pCP014745_00081 - 186 0.0021 18.1 0.9 1 1 2.9e-06 0.017 15.2 0.9 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP014745_00081 - 186 0.014 14.8 0.0 1 1 3.2e-06 0.019 14.4 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase NnrS PF05940.12 366 pCP014745_00083 - 124 0.023 14.1 9.9 1 1 1.3e-05 0.028 13.8 9.9 75 171 8 110 3 116 0.73 NnrS protein DUF2070 PF09843.9 564 pCP014745_00083 - 124 0.054 11.8 13.4 1 1 2.8e-05 0.063 11.6 13.4 80 176 9 115 3 123 0.72 Predicted membrane protein (DUF2070) DUF4199 PF13858.6 168 pCP014745_00083 - 124 0.15 12.4 19.9 1 2 0.0025 5.6 7.3 8.2 6 59 11 62 7 66 0.60 Protein of unknown function (DUF4199) DUF4199 PF13858.6 168 pCP014745_00083 - 124 0.15 12.4 19.9 2 2 0.00024 0.53 10.7 4.4 9 60 73 120 64 124 0.49 Protein of unknown function (DUF4199) Glucos_trans_II PF14264.6 297 pCP014745_00083 - 124 0.51 9.7 27.0 1 2 0.00022 0.49 9.7 7.9 226 278 5 53 2 59 0.81 Glucosyl transferase GtrII Glucos_trans_II PF14264.6 297 pCP014745_00083 - 124 0.51 9.7 27.0 2 2 0.007 16 4.8 11.0 138 187 67 113 58 123 0.55 Glucosyl transferase GtrII DUF5385 PF17359.2 220 pCP014745_00083 - 124 0.52 9.8 9.3 1 2 0.09 2e+02 1.4 0.6 5 30 35 61 32 67 0.59 Family of unknown function (DUF5385) DUF5385 PF17359.2 220 pCP014745_00083 - 124 0.52 9.8 9.3 2 2 4.4e-05 0.099 12.2 2.6 2 31 91 122 90 124 0.50 Family of unknown function (DUF5385) NVEALA PF14055.6 64 pCP014745_00083 - 124 4.1 7.4 6.4 1 3 1 2.3e+03 -1.4 0.1 15 15 43 43 30 67 0.50 NVEALA protein NVEALA PF14055.6 64 pCP014745_00083 - 124 4.1 7.4 6.4 2 3 0.04 89 3.2 0.5 9 35 72 98 62 99 0.79 NVEALA protein NVEALA PF14055.6 64 pCP014745_00083 - 124 4.1 7.4 6.4 3 3 0.0019 4.2 7.4 0.2 6 29 99 122 95 124 0.86 NVEALA protein TssN PF17555.2 275 pCP014745_00083 - 124 4.7 6.5 20.7 1 1 0.0026 5.9 6.2 20.7 38 142 9 116 2 122 0.71 Type VI secretion system, TssN DUF2663 PF10864.8 127 pCP014745_00083 - 124 6.7 7.1 10.9 1 2 0.1 2.3e+02 2.1 1.5 51 78 30 57 1 64 0.47 Protein of unknown function (DUF2663) DUF2663 PF10864.8 127 pCP014745_00083 - 124 6.7 7.1 10.9 2 2 0.016 36 4.8 8.5 17 83 56 121 27 123 0.75 Protein of unknown function (DUF2663) Lipase_3 PF01764.25 142 pCP014745_00084 - 531 3.6e-08 33.4 0.0 1 1 7.7e-11 1.4e-07 31.5 0.0 49 114 175 241 139 253 0.73 Lipase (class 3) DUF2974 PF11187.8 224 pCP014745_00084 - 531 2.8e-07 30.3 0.0 1 1 3.8e-10 6.7e-07 29.1 0.0 7 123 100 233 95 271 0.73 Protein of unknown function (DUF2974) PGAP1 PF07819.13 231 pCP014745_00084 - 531 2.7e-05 24.0 0.3 1 2 1.9e-07 0.00034 20.4 0.0 48 114 130 213 91 232 0.72 PGAP1-like protein PGAP1 PF07819.13 231 pCP014745_00084 - 531 2.7e-05 24.0 0.3 2 2 0.14 2.5e+02 1.2 0.1 44 83 306 346 271 361 0.77 PGAP1-like protein DUF676 PF05057.14 219 pCP014745_00084 - 531 5.3e-05 22.8 0.0 1 1 7.2e-08 0.00013 21.6 0.0 66 105 177 216 168 234 0.71 Putative serine esterase (DUF676) LIDHydrolase PF10230.9 266 pCP014745_00084 - 531 0.00045 19.9 0.1 1 1 5.2e-07 0.00093 18.8 0.1 66 101 168 206 133 217 0.71 Lipid-droplet associated hydrolase Abhydrolase_6 PF12697.7 220 pCP014745_00084 - 531 0.0017 19.0 0.0 1 1 1.3e-06 0.0024 18.5 0.0 51 87 175 215 140 258 0.74 Alpha/beta hydrolase family UPF0227 PF05728.12 187 pCP014745_00084 - 531 0.0021 18.1 0.9 1 3 5.7 1e+04 -3.8 0.1 123 146 54 77 36 87 0.53 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pCP014745_00084 - 531 0.0021 18.1 0.9 2 3 8e-06 0.014 15.3 0.0 40 80 172 211 144 227 0.70 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pCP014745_00084 - 531 0.0021 18.1 0.9 3 3 0.51 9.2e+02 -0.4 0.0 115 145 411 442 388 459 0.73 Uncharacterised protein family (UPF0227) DUF4450 PF14614.6 217 pCP014745_00084 - 531 0.016 14.8 0.1 1 1 2.7e-05 0.049 13.2 0.1 6 48 466 508 463 515 0.94 Domain of unknown function (DUF4450) DUF1257 PF06868.11 104 pCP014745_00084 - 531 0.24 11.7 2.3 1 3 0.0099 18 5.7 0.1 5 34 33 64 30 81 0.76 Protein of unknown function (DUF1257) DUF1257 PF06868.11 104 pCP014745_00084 - 531 0.24 11.7 2.3 2 3 0.021 38 4.6 0.1 29 69 415 455 401 468 0.84 Protein of unknown function (DUF1257) DUF1257 PF06868.11 104 pCP014745_00084 - 531 0.24 11.7 2.3 3 3 7.7 1.4e+04 -3.6 0.0 67 78 484 495 477 503 0.65 Protein of unknown function (DUF1257) SBDS PF01172.18 88 pCP014745_00084 - 531 0.79 9.8 5.3 1 2 1 1.9e+03 -1.0 0.1 20 41 43 63 27 110 0.69 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS PF01172.18 88 pCP014745_00084 - 531 0.79 9.8 5.3 2 2 0.00046 0.83 9.8 1.4 8 31 427 451 420 506 0.79 Shwachman-Bodian-Diamond syndrome (SBDS) protein SseC PF04888.12 317 pCP014745_00087 - 1305 0.0012 18.5 0.2 1 1 1.1e-06 0.0032 17.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family APOBEC_C PF05240.14 78 pCP014745_00087 - 1305 0.018 15.0 0.5 1 1 3e-05 0.091 12.7 0.5 26 76 766 819 755 821 0.86 APOBEC-like C-terminal domain ThrE PF06738.12 241 pCP014745_00087 - 1305 0.019 14.3 0.8 1 1 1.7e-05 0.051 12.9 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter Hormone_2 PF00123.20 28 pCP014745_00087 - 1305 0.033 14.1 0.1 1 1 5.2e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone PTS_EIIC_2 PF13303.6 328 pCP014745_00087 - 1305 0.037 13.1 1.0 1 1 2.1e-05 0.064 12.3 1.0 21 107 208 297 204 316 0.82 Phosphotransferase system, EIIC TPR_11 PF13414.6 42 pCP014745_00087 - 1305 0.064 12.9 0.3 1 1 5.9e-05 0.18 11.5 0.3 13 33 1193 1213 1192 1214 0.96 TPR repeat Glyco_tranf_2_5 PF13712.6 210 pCP014745_00089 - 267 0.00068 19.4 3.8 1 1 7.1e-08 0.0013 18.5 3.8 4 77 114 190 111 198 0.85 Glycosyltransferase like family TraG_N PF07916.11 467 pCP014745_00090 - 753 3.3e-42 144.9 22.9 1 2 3.7e-46 3.3e-42 144.9 22.9 12 465 2 449 1 455 0.80 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pCP014745_00090 - 753 3.3e-42 144.9 22.9 2 2 0.31 2.7e+03 -3.2 4.3 210 287 611 695 581 735 0.49 TraG-like protein, N-terminal region CHMI PF02962.15 124 pCP014745_00090 - 753 0.017 15.5 0.1 1 3 0.81 7.3e+03 -2.7 0.0 98 120 21 43 5 51 0.68 5-carboxymethyl-2-hydroxymuconate isomerase CHMI PF02962.15 124 pCP014745_00090 - 753 0.017 15.5 0.1 2 3 1.2e-05 0.11 12.9 0.0 47 120 69 144 61 148 0.78 5-carboxymethyl-2-hydroxymuconate isomerase CHMI PF02962.15 124 pCP014745_00090 - 753 0.017 15.5 0.1 3 3 0.67 6e+03 -2.5 0.0 45 97 546 600 538 619 0.62 5-carboxymethyl-2-hydroxymuconate isomerase YafQ_toxin PF15738.5 88 pCP014745_00093 - 93 2.5e-24 85.4 5.0 1 1 6.3e-28 2.8e-24 85.2 5.0 1 88 4 91 4 91 0.93 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 pCP014745_00093 - 93 9.5e-06 26.1 0.3 1 1 2.7e-09 1.2e-05 25.8 0.3 3 89 8 89 6 90 0.79 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 87 pCP014745_00093 - 93 0.00012 22.0 2.5 1 1 3.3e-08 0.00015 21.7 2.5 3 84 8 91 6 93 0.81 ParE-like toxin of type II bacterial toxin-antitoxin system BTHB PF18410.1 72 pCP014745_00093 - 93 0.086 12.7 1.5 1 3 0.04 1.8e+02 2.0 0.1 53 66 11 24 5 30 0.79 Basic tilted helix bundle domain BTHB PF18410.1 72 pCP014745_00093 - 93 0.086 12.7 1.5 2 3 0.16 7.4e+02 0.1 0.0 45 61 31 47 22 48 0.82 Basic tilted helix bundle domain BTHB PF18410.1 72 pCP014745_00093 - 93 0.086 12.7 1.5 3 3 0.0002 0.87 9.4 0.1 34 63 45 74 41 80 0.92 Basic tilted helix bundle domain HicB_lk_antitox PF15919.5 123 pCP014745_00095 - 119 8.3e-09 35.6 0.3 1 2 4.2e-06 0.038 14.1 0.0 1 60 12 74 12 79 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 pCP014745_00095 - 119 8.3e-09 35.6 0.3 2 2 3.9e-08 0.00035 20.7 0.1 88 123 77 108 72 108 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 pCP014745_00095 - 119 0.15 11.9 0.0 1 1 3.3e-05 0.29 11.0 0.0 3 35 80 112 79 115 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HicA_toxin PF07927.12 58 pCP014745_00096 - 75 1.7e-06 28.0 0.0 1 1 1.4e-10 2.5e-06 27.4 0.0 5 55 24 71 20 72 0.88 HicA toxin of bacterial toxin-antitoxin, Fic PF02661.18 97 pCP014745_00097 - 133 4.4e-05 24.3 0.0 1 1 8.9e-09 8e-05 23.5 0.0 23 97 6 76 2 76 0.72 Fic/DOC family Como_LCP PF02247.16 373 pCP014745_00097 - 133 0.056 12.0 0.1 1 1 7.2e-06 0.065 11.8 0.1 238 302 51 116 35 129 0.88 Large coat protein DHHA1 PF02272.19 138 pCP014745_00098 - 189 0.18 12.2 1.6 1 1 2e-05 0.37 11.2 1.6 15 92 36 117 22 129 0.83 DHHA1 domain DUF3825 PF12873.7 239 pCP014745_00099 - 335 2.2e-28 99.3 0.4 1 1 1.9e-32 3.4e-28 98.7 0.4 1 239 106 330 106 330 0.86 Domain of unknown function (DUF3825) DUF447 PF04289.12 176 pCP014745_00100 - 130 0.029 14.1 0.1 1 1 7.7e-06 0.046 13.5 0.1 42 111 21 87 19 96 0.85 Protein of unknown function (DUF447) WH1 PF00568.23 111 pCP014745_00100 - 130 0.04 13.9 0.3 1 1 1e-05 0.063 13.2 0.3 9 80 28 98 20 106 0.84 WH1 domain Cob_adeno_trans PF01923.18 164 pCP014745_00100 - 130 0.045 13.9 0.1 1 1 9.9e-06 0.059 13.5 0.1 25 104 37 127 32 130 0.79 Cobalamin adenosyltransferase IMS_C PF11799.8 118 pCP014745_00102 - 127 0.00012 22.7 0.0 1 1 2.2e-08 0.00019 22.1 0.0 59 111 11 62 3 67 0.88 impB/mucB/samB family C-terminal domain Patched PF02460.18 811 pCP014745_00102 - 127 0.024 12.8 0.2 1 1 3.1e-06 0.027 12.5 0.2 3 75 52 122 50 126 0.91 Patched family IMS PF00817.20 150 pCP014745_00104 - 220 1.5e-25 89.9 0.2 1 1 2.2e-29 4e-25 88.6 0.2 1 149 10 192 10 193 0.86 impB/mucB/samB family CooC_C PF15976.5 93 pCP014745_00105 - 53 0.015 15.3 0.0 1 1 1.8e-06 0.016 15.2 0.0 12 46 5 39 1 43 0.89 CS1-pili formation C-terminal PemK_toxin PF02452.17 111 pCP014745_00105 - 53 0.04 14.3 0.0 1 1 5.3e-06 0.048 14.1 0.0 81 108 2 29 1 32 0.91 PemK-like, MazF-like toxin of type II toxin-antitoxin system HTH_3 PF01381.22 55 pCP014745_00106 - 44 3.7e-07 30.1 0.0 1 1 4.6e-10 4.1e-07 30.0 0.0 1 36 9 43 9 44 0.94 Helix-turn-helix HTH_26 PF13443.6 63 pCP014745_00106 - 44 0.00017 21.9 0.0 1 1 2.1e-07 0.00019 21.8 0.0 2 35 9 42 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 pCP014745_00106 - 44 0.00074 19.0 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 65 pCP014745_00106 - 44 0.0012 18.7 0.0 1 1 1.4e-06 0.0013 18.6 0.0 1 32 9 41 9 44 0.81 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_19 PF12844.7 65 pCP014745_00106 - 44 0.0012 18.8 0.0 1 1 1.5e-06 0.0013 18.7 0.0 4 37 9 42 7 44 0.90 Helix-turn-helix domain HTH_23 PF13384.6 50 pCP014745_00106 - 44 0.002 17.8 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 pCP014745_00106 - 44 0.0038 17.3 0.3 1 1 6e-06 0.0054 16.8 0.3 25 46 1 22 1 40 0.90 ENT domain HTH_31 PF13560.6 64 pCP014745_00106 - 44 0.0048 17.2 0.0 1 1 5.8e-06 0.0052 17.1 0.0 12 40 15 43 9 44 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 pCP014745_00106 - 44 0.0094 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 pCP014745_00106 - 44 0.0099 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 pCP014745_00106 - 44 0.013 14.8 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 pCP014745_00106 - 44 0.02 14.8 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 pCP014745_00106 - 44 0.021 14.6 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP014745_00106 - 44 0.028 14.5 0.0 1 1 3.5e-05 0.032 14.3 0.0 3 33 9 38 7 42 0.84 Bacteriophage CI repressor helix-turn-helix domain HTH_AsnC-type PF13404.6 42 pCP014745_00106 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 51 pCP014745_00106 - 44 0.031 14.5 0.0 1 2 0.02 18 5.6 0.0 4 16 9 21 9 25 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 pCP014745_00106 - 44 0.031 14.5 0.0 2 2 0.0034 3 8.1 0.0 6 28 22 43 19 44 0.83 Helix-turn-helix domain Sigma70_r4 PF04545.16 50 pCP014745_00106 - 44 0.035 13.6 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 MerR PF00376.23 38 pCP014745_00106 - 44 0.08 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 pCP014745_00106 - 44 0.08 12.7 0.0 2 2 0.0096 8.6 6.2 0.0 4 18 22 36 21 43 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 pCP014745_00106 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 pCP014745_00106 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain DUF5601 PF18151.1 65 pCP014745_00108 - 133 0.0084 16.4 0.4 1 1 1.8e-06 0.016 15.5 0.4 12 55 44 89 29 90 0.86 Domain of unknown function (DUF5601) IFP_35_N PF07334.13 76 pCP014745_00108 - 133 0.14 12.2 4.9 1 3 0.0049 44 4.2 0.0 57 72 5 20 3 23 0.89 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 pCP014745_00108 - 133 0.14 12.2 4.9 2 3 0.15 1.3e+03 -0.5 0.1 1 20 42 61 29 73 0.74 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 pCP014745_00108 - 133 0.14 12.2 4.9 3 3 0.00022 2 8.5 0.4 6 28 97 119 90 126 0.88 Interferon-induced 35 kDa protein (IFP 35) N-terminus HSBP1 PF06825.12 51 pCP014745_00110 - 126 0.025 14.4 0.1 1 1 9.8e-06 0.044 13.6 0.1 14 43 65 94 61 98 0.87 Heat shock factor binding protein 1 CCDC-167 PF15188.6 84 pCP014745_00110 - 126 0.026 14.9 0.3 1 1 8.7e-06 0.039 14.3 0.3 36 79 48 108 20 110 0.72 Coiled-coil domain-containing protein 167 DUF3450 PF11932.8 241 pCP014745_00110 - 126 0.11 11.8 0.2 1 1 2.9e-05 0.13 11.6 0.2 36 105 35 104 19 112 0.82 Protein of unknown function (DUF3450) DUF4164 PF13747.6 89 pCP014745_00110 - 126 0.11 12.8 0.3 1 1 5.3e-05 0.24 11.7 0.1 13 42 65 95 60 98 0.89 Domain of unknown function (DUF4164) Phage_NinH PF06322.11 60 pCP014745_00111 - 47 0.1 12.5 0.2 1 1 7e-06 0.13 12.2 0.2 36 56 26 46 21 47 0.90 Phage NinH protein WGR PF05406.15 80 pCP014745_00115 - 75 4.2e-07 29.9 0.3 1 1 5.5e-11 4.9e-07 29.7 0.3 3 73 4 74 2 75 0.86 WGR domain Cadherin_pro PF08758.11 90 pCP014745_00115 - 75 0.035 14.3 0.0 1 1 4.8e-06 0.043 14.0 0.0 15 44 26 55 12 62 0.80 Cadherin prodomain like FlaC_arch PF05377.11 55 pCP014745_00116 - 76 0.0068 16.8 1.5 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pCP014745_00116 - 76 0.0068 16.8 1.5 2 2 3.8e-07 0.0068 16.8 1.5 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) Phage_integrase PF00589.22 172 pCP014745_00117 - 312 4.9e-24 85.0 0.5 1 1 3.2e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 pCP014745_00117 - 312 1.2e-05 25.5 4.2 1 2 1.5e-08 3.9e-05 23.9 1.8 1 79 16 99 16 102 0.92 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pCP014745_00117 - 312 1.2e-05 25.5 4.2 2 2 4 1e+04 -3.1 0.0 38 54 125 141 115 151 0.53 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP014745_00117 - 312 0.00017 21.8 4.6 1 3 6.8e-08 0.00017 21.8 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP014745_00117 - 312 0.00017 21.8 4.6 2 3 1.1 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP014745_00117 - 312 0.00017 21.8 4.6 3 3 2.1 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 85 pCP014745_00117 - 312 0.0026 18.2 8.9 1 3 0.00099 2.5 8.6 0.3 35 80 5 49 2 53 0.86 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pCP014745_00117 - 312 0.0026 18.2 8.9 2 3 3.4e-06 0.0086 16.5 5.3 2 79 16 101 15 104 0.90 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pCP014745_00117 - 312 0.0026 18.2 8.9 3 3 2 5.2e+03 -2.0 0.1 8 22 285 299 281 302 0.77 Phage integrase, N-terminal SAM-like domain Phyto-Amp PF15438.6 195 pCP014745_00117 - 312 0.0092 15.8 0.3 1 1 6.5e-06 0.017 15.0 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma Phage_int_SAM_3 PF14659.6 58 pCP014745_00117 - 312 0.027 14.7 3.2 1 1 4.2e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain YbjN PF10722.9 127 pCP014745_00117 - 312 0.029 14.4 0.3 1 2 0.00055 1.4 9.0 0.1 38 77 96 135 91 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 pCP014745_00117 - 312 0.029 14.4 0.3 2 2 0.047 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator IMS PF00817.20 150 pCP017026_00001 - 126 1.1e-06 28.7 0.1 1 1 1.7e-10 3e-06 27.3 0.1 1 80 10 122 10 126 0.71 impB/mucB/samB family DUF4368 PF14287.6 67 pCP017026_00002 - 628 3.6e-23 81.6 2.1 1 1 3.9e-26 1.2e-22 80.0 2.1 2 66 472 537 471 538 0.92 Domain of unknown function (DUF4368) Recombinase PF07508.13 104 pCP017026_00002 - 628 3.6e-22 78.7 0.7 1 2 2.6 7.8e+03 -2.7 0.0 8 32 133 157 132 173 0.80 Recombinase Recombinase PF07508.13 104 pCP017026_00002 - 628 3.6e-22 78.7 0.7 2 2 4.6e-25 1.4e-21 76.9 0.2 1 101 183 303 183 305 0.96 Recombinase Resolvase PF00239.21 146 pCP017026_00002 - 628 5.2e-21 75.3 0.1 1 3 1.7e-24 5.2e-21 75.3 0.1 2 146 9 161 8 161 0.90 Resolvase, N terminal domain Resolvase PF00239.21 146 pCP017026_00002 - 628 5.2e-21 75.3 0.1 2 3 0.18 5.4e+02 0.6 2.3 21 62 380 422 375 521 0.78 Resolvase, N terminal domain Resolvase PF00239.21 146 pCP017026_00002 - 628 5.2e-21 75.3 0.1 3 3 1.2 3.6e+03 -2.1 1.6 123 142 579 598 549 602 0.65 Resolvase, N terminal domain Zn_ribbon_recom PF13408.6 58 pCP017026_00002 - 628 1.4e-12 47.9 2.6 1 1 1.5e-15 4.3e-12 46.3 2.6 1 58 318 380 318 380 0.84 Recombinase zinc beta ribbon domain Xrn1_D3 PF18194.1 71 pCP017026_00002 - 628 0.14 12.2 0.7 1 2 0.00013 0.38 10.9 0.1 2 28 376 402 375 412 0.91 Exoribonuclease 1 Domain-3 Xrn1_D3 PF18194.1 71 pCP017026_00002 - 628 0.14 12.2 0.7 2 2 4 1.2e+04 -3.5 0.1 33 50 464 481 458 484 0.74 Exoribonuclease 1 Domain-3 Snapin_Pallidin PF14712.6 90 pCP017026_00002 - 628 1.2 9.6 6.0 1 3 6 1.8e+04 -3.8 0.0 33 51 29 47 24 54 0.68 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 pCP017026_00002 - 628 1.2 9.6 6.0 2 3 0.0043 13 6.3 0.2 46 78 397 429 383 435 0.78 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 pCP017026_00002 - 628 1.2 9.6 6.0 3 3 0.0082 24 5.4 0.2 26 56 455 486 452 504 0.82 Snapin/Pallidin TnpV PF14198.6 112 pCP017026_00003 - 114 3.3e-41 139.8 0.5 1 1 2e-45 3.6e-41 139.6 0.5 1 112 4 112 4 112 0.99 Transposon-encoded protein TnpV AAA_18 PF13238.6 130 pCP017026_00004 - 181 1.4e-14 54.8 0.0 1 1 4.6e-17 1.8e-14 54.4 0.0 1 122 7 133 7 141 0.78 AAA domain AAA_33 PF13671.6 143 pCP017026_00004 - 181 2.8e-11 43.8 0.0 1 1 8.7e-14 3.5e-11 43.5 0.0 2 136 7 144 6 147 0.80 AAA domain CPT PF07931.12 174 pCP017026_00004 - 181 1.9e-10 40.9 0.0 1 1 9.1e-13 3.6e-10 39.9 0.0 1 172 4 172 4 174 0.80 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 199 pCP017026_00004 - 181 1.5e-07 30.9 0.1 1 1 8e-10 3.2e-07 29.8 0.1 18 161 6 139 2 174 0.76 Zeta toxin AAA_28 PF13521.6 163 pCP017026_00004 - 181 4e-06 27.2 0.2 1 2 2.8e-08 1.1e-05 25.7 0.0 2 65 7 74 6 86 0.72 AAA domain AAA_28 PF13521.6 163 pCP017026_00004 - 181 4e-06 27.2 0.2 2 2 4.9 2e+03 -1.1 0.0 35 127 100 125 89 158 0.52 AAA domain AAA PF00004.29 132 pCP017026_00004 - 181 7.9e-06 26.3 0.0 1 2 1.4e-07 5.6e-05 23.6 0.0 2 25 8 31 7 83 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP017026_00004 - 181 7.9e-06 26.3 0.0 2 2 1.5 6.2e+02 0.8 0.0 113 131 117 135 96 176 0.64 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 136 pCP017026_00004 - 181 9.5e-06 26.1 0.0 1 1 1e-07 4e-05 24.1 0.0 1 128 10 131 10 138 0.76 AAA domain AAA_22 PF13401.6 137 pCP017026_00004 - 181 1.5e-05 25.3 0.0 1 2 1.5e-07 5.9e-05 23.4 0.0 4 43 3 42 1 88 0.83 AAA domain AAA_22 PF13401.6 137 pCP017026_00004 - 181 1.5e-05 25.3 0.0 2 2 2.7 1.1e+03 -0.2 0.0 61 98 120 156 91 176 0.72 AAA domain AAA_14 PF13173.6 131 pCP017026_00004 - 181 6.5e-05 23.0 0.0 1 1 2.4e-07 9.5e-05 22.4 0.0 2 123 4 137 3 145 0.74 AAA domain AAA_16 PF13191.6 170 pCP017026_00004 - 181 0.00031 21.2 0.0 1 1 1e-06 0.00041 20.8 0.0 22 61 2 42 1 133 0.81 AAA ATPase domain DUF2075 PF09848.9 363 pCP017026_00004 - 181 0.001 18.4 0.2 1 1 3e-06 0.0012 18.2 0.2 2 27 5 32 4 146 0.90 Uncharacterized conserved protein (DUF2075) KTI12 PF08433.10 272 pCP017026_00004 - 181 0.0016 17.9 0.1 1 2 9.5e-06 0.0038 16.7 0.0 3 42 6 44 5 87 0.77 Chromatin associated protein KTI12 KTI12 PF08433.10 272 pCP017026_00004 - 181 0.0016 17.9 0.1 2 2 3.4 1.4e+03 -1.5 0.1 128 128 135 135 100 175 0.55 Chromatin associated protein KTI12 AAA_19 PF13245.6 146 pCP017026_00004 - 181 0.0017 18.7 0.2 1 1 8.9e-06 0.0035 17.7 0.0 9 39 3 33 1 49 0.84 AAA domain AAA_24 PF13479.6 197 pCP017026_00004 - 181 0.0019 17.9 0.4 1 1 1e-05 0.004 16.9 0.4 3 33 5 40 3 173 0.73 AAA domain AAA_30 PF13604.6 192 pCP017026_00004 - 181 0.0023 17.7 0.2 1 1 9.8e-06 0.0039 16.9 0.2 17 40 3 26 1 39 0.84 AAA domain ABC_tran PF00005.27 137 pCP017026_00004 - 181 0.0025 18.3 0.1 1 1 7.6e-06 0.003 18.1 0.1 9 51 2 43 1 160 0.83 ABC transporter ATPase_2 PF01637.18 233 pCP017026_00004 - 181 0.0033 17.4 0.4 1 2 0.0026 1 9.2 0.0 19 54 3 38 1 65 0.80 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pCP017026_00004 - 181 0.0033 17.4 0.4 2 2 0.019 7.5 6.4 0.4 48 114 102 174 96 179 0.71 ATPase domain predominantly from Archaea APS_kinase PF01583.20 158 pCP017026_00004 - 181 0.0047 16.8 0.0 1 2 0.00025 0.099 12.5 0.0 1 45 3 45 3 94 0.65 Adenylylsulphate kinase APS_kinase PF01583.20 158 pCP017026_00004 - 181 0.0047 16.8 0.0 2 2 0.28 1.1e+02 2.6 0.0 45 77 119 151 98 174 0.83 Adenylylsulphate kinase TIP49 PF06068.13 351 pCP017026_00004 - 181 0.0054 16.0 0.4 1 2 4.9e-05 0.019 14.2 0.0 50 75 4 29 1 46 0.81 TIP49 P-loop domain TIP49 PF06068.13 351 pCP017026_00004 - 181 0.0054 16.0 0.4 2 2 1.3 5e+02 -0.4 0.3 142 182 120 160 99 172 0.70 TIP49 P-loop domain ATPase PF06745.13 231 pCP017026_00004 - 181 0.0068 15.8 1.2 1 2 4e-05 0.016 14.6 0.1 18 38 3 23 1 39 0.87 KaiC ATPase PF06745.13 231 pCP017026_00004 - 181 0.0068 15.8 1.2 2 2 1.4 5.7e+02 -0.3 0.2 99 130 128 160 100 178 0.50 KaiC DnaB_C PF03796.15 255 pCP017026_00004 - 181 0.01 15.2 1.0 1 2 0.00021 0.084 12.2 0.0 17 47 2 32 1 41 0.84 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP017026_00004 - 181 0.01 15.2 1.0 2 2 0.34 1.4e+02 1.7 0.3 47 116 102 172 96 180 0.50 DnaB-like helicase C terminal domain T2SSE PF00437.20 273 pCP017026_00004 - 181 0.011 14.9 0.0 1 1 4.2e-05 0.017 14.2 0.0 130 154 5 29 1 71 0.87 Type II/IV secretion system protein SRP54 PF00448.22 196 pCP017026_00004 - 181 0.016 14.9 0.1 1 2 9.1e-05 0.036 13.7 0.0 3 40 6 42 4 46 0.81 SRP54-type protein, GTPase domain SRP54 PF00448.22 196 pCP017026_00004 - 181 0.016 14.9 0.1 2 2 6.3 2.5e+03 -2.1 0.0 76 80 123 127 97 171 0.55 SRP54-type protein, GTPase domain Viral_helicase1 PF01443.18 234 pCP017026_00004 - 181 0.017 14.8 0.0 1 1 6.8e-05 0.027 14.2 0.0 1 60 7 75 7 89 0.66 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.15 168 pCP017026_00004 - 181 0.018 15.0 0.6 1 2 9e-05 0.036 14.0 0.2 2 22 7 27 6 36 0.88 NTPase NTPase_1 PF03266.15 168 pCP017026_00004 - 181 0.018 15.0 0.6 2 2 8.8 3.5e+03 -2.3 0.0 92 92 126 126 96 169 0.60 NTPase RuvB_N PF05496.12 159 pCP017026_00004 - 181 0.018 14.8 0.1 1 2 0.0002 0.08 12.7 0.0 36 59 7 30 3 46 0.86 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 pCP017026_00004 - 181 0.018 14.8 0.1 2 2 2.6 1e+03 -0.7 0.0 96 140 111 159 103 171 0.62 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 194 pCP017026_00004 - 181 0.02 14.5 0.3 1 3 0.00018 0.071 12.7 0.1 32 54 3 25 1 28 0.88 AAA domain AAA_25 PF13481.6 194 pCP017026_00004 - 181 0.02 14.5 0.3 2 3 8 3.2e+03 -2.5 0.0 119 174 57 74 31 85 0.49 AAA domain AAA_25 PF13481.6 194 pCP017026_00004 - 181 0.02 14.5 0.3 3 3 4.2 1.7e+03 -1.6 0.0 69 89 101 121 92 169 0.51 AAA domain Cytidylate_kin2 PF13189.6 179 pCP017026_00004 - 181 0.024 14.8 0.2 1 2 0.038 15 5.6 0.1 1 22 6 27 6 33 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 pCP017026_00004 - 181 0.024 14.8 0.2 2 2 0.011 4.5 7.4 0.0 108 147 99 138 42 146 0.89 Cytidylate kinase-like family Rad17 PF03215.15 186 pCP017026_00004 - 181 0.033 14.1 0.0 1 2 0.00041 0.16 11.9 0.0 45 69 4 28 1 41 0.87 Rad17 P-loop domain Rad17 PF03215.15 186 pCP017026_00004 - 181 0.033 14.1 0.0 2 2 1.9 7.6e+02 -0.1 0.0 113 146 110 145 98 167 0.71 Rad17 P-loop domain NB-ARC PF00931.22 252 pCP017026_00004 - 181 0.038 13.2 0.0 1 1 0.00018 0.072 12.3 0.0 21 47 5 30 1 48 0.84 NB-ARC domain ArsA_ATPase PF02374.15 305 pCP017026_00004 - 181 0.04 13.1 0.1 1 2 0.00025 0.099 11.8 0.0 2 44 5 46 4 84 0.80 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 pCP017026_00004 - 181 0.04 13.1 0.1 2 2 2.8 1.1e+03 -1.5 0.1 162 282 137 151 105 175 0.45 Anion-transporting ATPase MKT1_N PF12247.8 90 pCP017026_00004 - 181 0.042 14.2 0.0 1 1 0.00024 0.097 13.0 0.0 14 52 39 75 35 154 0.89 Temperature dependent protein affecting M2 dsRNA replication Hydin_ADK PF17213.3 198 pCP017026_00004 - 181 0.043 14.1 1.2 1 2 0.00014 0.054 13.8 0.2 2 22 7 27 6 31 0.92 Hydin Adenylate kinase-like domain Hydin_ADK PF17213.3 198 pCP017026_00004 - 181 0.043 14.1 1.2 2 2 9.1 3.6e+03 -2.0 0.0 58 72 123 137 109 177 0.42 Hydin Adenylate kinase-like domain NACHT PF05729.12 166 pCP017026_00004 - 181 0.048 13.6 0.0 1 1 0.00018 0.071 13.0 0.0 1 31 5 35 5 73 0.75 NACHT domain AAA_11 PF13086.6 261 pCP017026_00004 - 181 0.051 13.4 1.5 1 1 0.00025 0.1 12.4 1.5 16 42 3 29 1 179 0.86 AAA domain RNA_helicase PF00910.22 107 pCP017026_00004 - 181 0.051 14.0 0.0 1 1 0.00024 0.095 13.1 0.0 1 35 7 42 7 77 0.71 RNA helicase Sigma54_activat PF00158.26 168 pCP017026_00004 - 181 0.055 13.2 0.0 1 1 0.00025 0.1 12.3 0.0 25 67 7 56 1 89 0.73 Sigma-54 interaction domain GvpD PF07088.11 484 pCP017026_00004 - 181 0.057 12.0 0.4 1 2 0.001 0.41 9.2 0.1 9 26 3 20 1 38 0.87 GvpD gas vesicle protein GvpD PF07088.11 484 pCP017026_00004 - 181 0.057 12.0 0.4 2 2 0.29 1.1e+02 1.1 0.0 31 375 97 132 79 174 0.65 GvpD gas vesicle protein AAA_7 PF12775.7 181 pCP017026_00004 - 181 0.059 12.9 0.2 1 2 0.0003 0.12 11.9 0.0 31 64 2 35 1 47 0.83 P-loop containing dynein motor region AAA_7 PF12775.7 181 pCP017026_00004 - 181 0.059 12.9 0.2 2 2 6 2.4e+03 -2.1 0.0 84 90 126 132 98 168 0.57 P-loop containing dynein motor region PhoH PF02562.16 205 pCP017026_00004 - 181 0.079 12.4 0.1 1 1 0.00046 0.18 11.2 0.1 18 43 3 28 1 36 0.81 PhoH-like protein IstB_IS21 PF01695.17 178 pCP017026_00004 - 181 0.08 12.7 0.1 1 1 0.00042 0.17 11.6 0.0 48 70 5 27 1 47 0.84 IstB-like ATP binding protein ATP-synt_ab PF00006.25 213 pCP017026_00004 - 181 0.086 12.5 0.0 1 1 0.00027 0.11 12.2 0.0 12 70 2 120 1 140 0.67 ATP synthase alpha/beta family, nucleotide-binding domain Ploopntkinase1 PF18748.1 196 pCP017026_00004 - 181 0.1 12.1 0.1 1 2 0.24 94 2.4 0.0 16 41 3 29 1 41 0.78 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 pCP017026_00004 - 181 0.1 12.1 0.1 2 2 0.0052 2.1 7.8 0.0 93 164 72 143 56 158 0.76 P-loop Nucleotide Kinase1 IPT PF01745.16 233 pCP017026_00004 - 181 0.11 11.9 0.2 1 2 0.00066 0.26 10.6 0.1 3 25 6 28 4 41 0.90 Isopentenyl transferase IPT PF01745.16 233 pCP017026_00004 - 181 0.11 11.9 0.2 2 2 3.7 1.5e+03 -1.6 0.0 194 211 127 144 82 161 0.65 Isopentenyl transferase Ploopntkinase3 PF18751.1 185 pCP017026_00004 - 181 0.12 12.2 0.4 1 2 0.001 0.4 10.6 0.0 3 33 4 34 1 49 0.80 P-loop Nucleotide Kinase3 Ploopntkinase3 PF18751.1 185 pCP017026_00004 - 181 0.12 12.2 0.4 2 2 4.4 1.8e+03 -1.3 0.0 108 145 101 139 95 160 0.69 P-loop Nucleotide Kinase3 APH PF01636.23 240 pCP017026_00005 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pCP017026_00005 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pCP017026_00005 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pCP017026_00005 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pCP017026_00005 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pCP017026_00005 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 pCP017026_00006 - 139 1.3e-51 175.6 0.1 1 1 8.3e-56 1.5e-51 175.5 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase APH PF01636.23 240 pCP017026_00007 - 250 6.8e-11 42.6 0.0 1 1 9.1e-15 8.1e-11 42.3 0.0 34 218 45 220 16 242 0.81 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pCP017026_00007 - 250 0.014 14.6 0.1 1 2 0.00011 1 8.5 0.0 52 94 44 84 11 91 0.72 Fructosamine kinase Fructosamin_kin PF03881.14 288 pCP017026_00007 - 250 0.014 14.6 0.1 2 2 0.0019 17 4.5 0.1 184 251 168 237 107 246 0.75 Fructosamine kinase CPT PF07931.12 174 pCP017026_00008 - 146 4e-06 26.8 0.0 1 1 1.4e-09 4.9e-06 26.5 0.0 59 172 20 137 11 139 0.78 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 130 pCP017026_00008 - 146 9.4e-06 26.2 0.0 1 1 3.2e-09 1.2e-05 25.9 0.0 46 122 15 98 1 106 0.77 AAA domain AAA_33 PF13671.6 143 pCP017026_00008 - 146 0.00063 19.9 0.0 1 1 2.2e-07 0.0008 19.6 0.0 55 136 30 109 9 112 0.82 AAA domain MKT1_N PF12247.8 90 pCP017026_00008 - 146 0.027 14.8 0.0 1 1 1.7e-05 0.063 13.6 0.0 15 52 5 40 3 131 0.90 Temperature dependent protein affecting M2 dsRNA replication AAA_17 PF13207.6 136 pCP017026_00008 - 146 0.14 12.6 0.0 1 1 5.4e-05 0.19 12.1 0.0 55 128 27 96 12 103 0.73 AAA domain DUF3847 PF12958.7 81 pCP017026_00009 - 119 1.8e-31 108.1 8.2 1 1 5.7e-35 2.6e-31 107.6 8.2 1 81 6 89 6 89 0.98 Protein of unknown function (DUF3847) CENP-Q PF13094.6 168 pCP017026_00009 - 119 0.034 14.3 11.9 1 1 9.8e-06 0.044 14.0 11.9 46 96 5 56 2 115 0.74 CENP-Q, a CENPA-CAD centromere complex subunit TPR_8 PF13181.6 34 pCP017026_00009 - 119 0.078 13.2 0.1 1 1 4.4e-05 0.2 12.0 0.1 6 27 20 41 16 48 0.89 Tetratricopeptide repeat PHM7_cyt PF14703.6 176 pCP017026_00009 - 119 4.2 7.6 7.2 1 1 0.0015 6.6 6.9 7.2 40 87 3 56 1 111 0.75 Cytosolic domain of 10TM putative phosphate transporter MobA_MobL PF03389.15 222 pCP017026_00010 - 498 3.7e-79 265.5 0.0 1 2 7.3e-82 1.4e-78 263.6 0.0 1 222 17 246 17 246 0.99 MobA/MobL family MobA_MobL PF03389.15 222 pCP017026_00010 - 498 3.7e-79 265.5 0.0 2 2 0.85 1.7e+03 -1.5 0.1 7 188 309 339 297 367 0.59 MobA/MobL family Spectrin PF00435.21 105 pCP017026_00010 - 498 0.015 15.8 2.4 1 2 9e-05 0.18 12.3 0.2 6 102 269 365 264 368 0.75 Spectrin repeat Spectrin PF00435.21 105 pCP017026_00010 - 498 0.015 15.8 2.4 2 2 0.14 2.7e+02 2.1 0.1 33 90 406 463 396 464 0.78 Spectrin repeat Prominin PF05478.11 800 pCP017026_00010 - 498 0.02 12.9 1.9 1 1 1.4e-05 0.029 12.4 1.9 542 695 321 479 298 487 0.84 Prominin Snapin_Pallidin PF14712.6 90 pCP017026_00010 - 498 0.021 15.2 2.0 1 2 3e-05 0.059 13.8 0.3 14 69 337 393 335 395 0.95 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 pCP017026_00010 - 498 0.021 15.2 2.0 2 2 0.69 1.4e+03 -0.2 0.1 36 69 430 465 427 482 0.67 Snapin/Pallidin DUF2408 PF10303.9 135 pCP017026_00010 - 498 0.032 14.8 2.4 1 2 3e-05 0.06 13.9 0.3 39 120 312 394 253 396 0.74 Protein of unknown function (DUF2408) DUF2408 PF10303.9 135 pCP017026_00010 - 498 0.032 14.8 2.4 2 2 0.56 1.1e+03 0.1 0.1 43 67 429 454 398 489 0.61 Protein of unknown function (DUF2408) Tup_N PF08581.10 77 pCP017026_00010 - 498 0.065 13.5 2.3 1 4 2.7 5.3e+03 -2.2 0.0 45 61 158 174 157 177 0.82 Tup N-terminal Tup_N PF08581.10 77 pCP017026_00010 - 498 0.065 13.5 2.3 2 4 4.2 8.4e+03 -2.8 0.0 19 48 244 273 229 276 0.72 Tup N-terminal Tup_N PF08581.10 77 pCP017026_00010 - 498 0.065 13.5 2.3 3 4 0.0033 6.6 7.1 0.3 28 64 339 375 318 383 0.90 Tup N-terminal Tup_N PF08581.10 77 pCP017026_00010 - 498 0.065 13.5 2.3 4 4 0.034 67 3.9 0.0 12 51 422 461 417 467 0.74 Tup N-terminal Mod_r PF07200.13 146 pCP017026_00010 - 498 0.65 10.1 8.1 1 3 0.00031 0.62 10.2 0.4 54 101 334 383 293 387 0.76 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 pCP017026_00010 - 498 0.65 10.1 8.1 2 3 0.094 1.9e+02 2.1 0.2 69 91 429 451 398 465 0.69 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 pCP017026_00010 - 498 0.65 10.1 8.1 3 3 0.14 2.8e+02 1.5 1.6 18 57 451 490 427 498 0.33 Modifier of rudimentary (Mod(r)) protein SOAR PF16533.5 101 pCP017026_00010 - 498 1.2 9.1 5.4 1 2 0.00078 1.5 8.8 0.1 50 97 326 373 300 376 0.81 STIM1 Orai1-activating region SOAR PF16533.5 101 pCP017026_00010 - 498 1.2 9.1 5.4 2 2 0.35 6.9e+02 0.3 2.1 19 58 398 455 388 490 0.72 STIM1 Orai1-activating region DUF4407 PF14362.6 298 pCP017026_00010 - 498 5.1 6.4 8.4 1 1 0.027 53 3.0 8.4 130 235 333 446 233 498 0.58 Domain of unknown function (DUF4407) AAA_25 PF13481.6 194 pCP017026_00011 - 623 4.9e-30 104.5 0.0 1 1 8.5e-33 8.9e-30 103.7 0.0 11 193 306 475 297 476 0.87 AAA domain Toprim_2 PF13155.6 90 pCP017026_00011 - 623 6.6e-18 64.9 0.0 1 2 2.4e-20 2.5e-17 63.1 0.0 1 90 189 278 189 278 0.91 Toprim-like Toprim_2 PF13155.6 90 pCP017026_00011 - 623 6.6e-18 64.9 0.0 2 2 4.5 4.7e+03 -1.9 0.1 44 77 393 427 381 441 0.75 Toprim-like DUF3991 PF13154.6 76 pCP017026_00011 - 623 3.3e-14 53.0 0.0 1 2 1.6e-16 1.7e-13 50.7 0.0 1 74 112 183 112 185 0.93 Protein of unknown function (DUF3991) DUF3991 PF13154.6 76 pCP017026_00011 - 623 3.3e-14 53.0 0.0 2 2 2.8 3e+03 -1.3 0.0 6 19 589 602 587 620 0.71 Protein of unknown function (DUF3991) DnaB_C PF03796.15 255 pCP017026_00011 - 623 8.6e-09 35.1 0.0 1 2 0.00037 0.39 10.0 0.0 19 45 329 355 326 366 0.87 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP017026_00011 - 623 8.6e-09 35.1 0.0 2 2 4.7e-08 4.9e-05 22.8 0.0 90 185 385 478 369 490 0.79 DnaB-like helicase C terminal domain Toprim_3 PF13362.6 95 pCP017026_00011 - 623 1.8e-08 34.6 0.2 1 2 4.2e-10 4.4e-07 30.2 0.0 2 92 188 281 187 283 0.86 Toprim domain Toprim_3 PF13362.6 95 pCP017026_00011 - 623 1.8e-08 34.6 0.2 2 2 0.46 4.8e+02 1.2 0.6 40 85 393 439 381 446 0.77 Toprim domain ATPase PF06745.13 231 pCP017026_00011 - 623 7.2e-06 25.5 0.1 1 1 1.9e-07 0.0002 20.8 0.0 16 171 326 478 324 511 0.73 KaiC AAA_22 PF13401.6 137 pCP017026_00011 - 623 0.0002 21.6 0.0 1 1 5.5e-07 0.00058 20.2 0.0 6 130 330 470 329 475 0.76 AAA domain NACHT PF05729.12 166 pCP017026_00011 - 623 0.0033 17.4 0.0 1 2 1.1 1.1e+03 -0.7 0.0 43 71 6 33 3 43 0.76 NACHT domain NACHT PF05729.12 166 pCP017026_00011 - 623 0.0033 17.4 0.0 2 2 2.5e-05 0.027 14.4 0.0 2 28 331 357 330 429 0.89 NACHT domain Toprim_4 PF13662.6 89 pCP017026_00011 - 623 0.0078 16.7 0.0 1 1 2.5e-05 0.026 15.0 0.0 47 88 227 267 212 268 0.81 Toprim domain AAA_5 PF07728.14 138 pCP017026_00011 - 623 0.018 15.0 0.0 1 1 6e-05 0.063 13.3 0.0 3 26 333 357 332 406 0.82 AAA domain (dynein-related subfamily) Rad51 PF08423.11 255 pCP017026_00011 - 623 0.05 12.8 0.0 1 1 0.00051 0.54 9.5 0.0 34 190 326 475 324 494 0.69 Rad51 Toprim PF01751.22 103 pCP017026_00011 - 623 0.051 13.8 0.0 1 1 0.00011 0.12 12.7 0.0 51 87 222 258 204 269 0.85 Toprim domain AAA_11 PF13086.6 261 pCP017026_00011 - 623 0.065 13.0 0.0 1 2 0.24 2.6e+02 1.2 0.0 50 97 230 271 208 294 0.80 AAA domain AAA_11 PF13086.6 261 pCP017026_00011 - 623 0.065 13.0 0.0 2 2 0.00095 1 9.1 0.0 18 43 330 355 320 400 0.76 AAA domain RNA_helicase PF00910.22 107 pCP017026_00011 - 623 0.13 12.7 0.0 1 2 2.6 2.8e+03 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 pCP017026_00011 - 623 0.13 12.7 0.0 2 2 0.00069 0.73 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase PhoH PF02562.16 205 pCP017026_00011 - 623 0.17 11.3 0.0 1 1 0.00034 0.36 10.3 0.0 20 47 330 357 322 362 0.88 PhoH-like protein zf-CHC2 PF01807.20 98 pCP017026_00011 - 623 0.18 11.7 0.0 1 1 0.00035 0.37 10.6 0.0 44 88 40 82 8 90 0.84 CHC2 zinc finger DUF2075 PF09848.9 363 pCP017026_00011 - 623 0.2 10.8 0.0 1 1 0.00031 0.33 10.2 0.0 2 26 330 354 329 398 0.89 Uncharacterized conserved protein (DUF2075) IMS_C PF11799.8 118 pCP017026_00012 - 236 1.1e-12 48.7 0.0 1 1 2.1e-16 1.9e-12 48.0 0.0 8 111 94 221 90 226 0.91 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 32 pCP017026_00012 - 236 0.0002 21.5 0.0 1 2 7.5e-08 0.00067 19.8 0.1 6 32 19 46 16 46 0.92 IMS family HHH motif IMS_HHH PF11798.8 32 pCP017026_00012 - 236 0.0002 21.5 0.0 2 2 1.6 1.4e+04 -3.2 0.0 17 28 79 90 79 92 0.79 IMS family HHH motif Cob_adeno_trans PF01923.18 164 pCP017026_00015 - 130 0.014 15.6 0.1 1 1 9.4e-07 0.017 15.3 0.1 25 106 37 129 23 130 0.80 Cobalamin adenosyltransferase DUF3825 PF12873.7 239 pCP017026_00016 - 335 4.2e-29 101.7 0.3 1 1 3.7e-33 6.7e-29 101.0 0.3 1 239 106 330 106 330 0.86 Domain of unknown function (DUF3825) DUF4795 PF16043.5 204 pCP017026_00017 - 201 0.026 14.1 0.1 1 1 2.4e-06 0.043 13.4 0.1 60 124 45 109 31 174 0.86 Domain of unknown function (DUF4795) SGT1 PF07093.11 583 pCP017026_00018 - 50 0.046 12.2 2.7 1 1 7.5e-06 0.045 12.2 2.7 511 553 7 49 1 50 0.79 SGT1 protein PG_binding_4 PF12229.8 114 pCP017026_00018 - 50 0.057 13.7 1.0 1 1 1.1e-05 0.065 13.5 1.0 42 79 10 48 2 50 0.81 Putative peptidoglycan binding domain DUF2175 PF09943.9 98 pCP017026_00018 - 50 0.077 13.3 1.2 1 1 1.4e-05 0.082 13.2 1.2 60 89 9 38 2 47 0.83 Uncharacterized protein conserved in archaea (DUF2175) DUF5309 PF17236.2 280 pCP017026_00019 - 81 3e-05 23.5 0.5 1 1 1.8e-09 3.3e-05 23.4 0.5 4 53 24 74 21 81 0.82 Family of unknown function (DUF5309) HicA_toxin PF07927.12 58 pCP017026_00020 - 75 1.7e-06 28.0 0.0 1 1 1.4e-10 2.5e-06 27.4 0.0 5 55 24 71 20 72 0.88 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pCP017026_00021 - 119 8.3e-09 35.6 0.3 1 2 4.2e-06 0.038 14.1 0.0 1 60 12 74 12 79 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 pCP017026_00021 - 119 8.3e-09 35.6 0.3 2 2 3.9e-08 0.00035 20.7 0.1 88 123 77 108 72 108 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 pCP017026_00021 - 119 0.15 11.9 0.0 1 1 3.3e-05 0.29 11.0 0.0 3 35 80 112 79 115 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 ParE_toxin PF05016.15 90 pCP017026_00023 - 93 1.1e-07 32.4 0.1 1 1 6.6e-12 1.2e-07 32.3 0.1 4 82 6 85 3 89 0.87 ParE toxin of type II toxin-antitoxin system, parDE YafQ_toxin PF15738.5 88 pCP017026_00025 - 91 8.9e-29 99.7 1.1 1 1 5.4e-33 9.7e-29 99.5 1.1 2 88 3 89 2 89 0.98 Bacterial toxin of type II toxin-antitoxin system, YafQ DUF4131 PF13567.6 167 pCP017026_00026 - 106 0.00082 19.1 0.1 1 1 2.8e-07 0.001 18.8 0.1 3 83 19 97 17 100 0.70 Domain of unknown function (DUF4131) DUF981 PF06168.11 187 pCP017026_00026 - 106 0.014 15.3 3.1 1 1 4.9e-06 0.018 15.0 3.1 120 175 10 66 5 73 0.87 Protein of unknown function (DUF981) Wzy_C PF04932.15 155 pCP017026_00026 - 106 0.055 13.1 1.3 1 1 1.8e-05 0.064 12.9 1.3 19 65 24 71 19 96 0.81 O-Antigen ligase DUF2721 PF11026.8 129 pCP017026_00026 - 106 0.068 13.1 3.9 1 1 2.4e-05 0.085 12.8 3.9 53 118 6 66 2 69 0.85 Protein of unknown function (DUF2721) DUF2663 PF10864.8 127 pCP017026_00026 - 106 0.13 12.7 1.9 1 1 4.5e-05 0.16 12.4 1.9 8 80 9 81 2 86 0.64 Protein of unknown function (DUF2663) TraG_N PF07916.11 467 pCP017026_00027 - 900 3e-39 135.2 20.8 1 4 1.7e-43 3e-39 135.2 20.8 38 465 23 446 1 452 0.78 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pCP017026_00027 - 900 3e-39 135.2 20.8 2 4 0.1 1.8e+03 -2.6 0.9 267 318 538 590 504 600 0.52 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pCP017026_00027 - 900 3e-39 135.2 20.8 3 4 0.077 1.4e+03 -2.2 2.0 246 312 686 748 651 775 0.48 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pCP017026_00027 - 900 3e-39 135.2 20.8 4 4 0.36 6.4e+03 -4.4 5.1 229 319 809 885 797 899 0.46 TraG-like protein, N-terminal region Glyco_tranf_2_5 PF13712.6 210 pCP017026_00028 - 267 0.0018 18.0 4.5 1 1 1.9e-07 0.0035 17.1 4.5 4 77 114 190 111 198 0.85 Glycosyltransferase like family UvrA_DNA-bind PF17755.1 110 pCP017026_00029 - 422 0.0008 19.7 0.3 1 2 1.9e-05 0.33 11.3 0.1 24 65 32 73 19 86 0.83 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pCP017026_00029 - 422 0.0008 19.7 0.3 2 2 0.00081 14 6.0 0.0 15 33 92 109 88 135 0.79 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pCP017026_00030 - 426 0.003 17.9 0.2 1 3 0.00012 2.1 8.7 0.1 24 65 36 77 30 90 0.84 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pCP017026_00030 - 426 0.003 17.9 0.2 2 3 0.00082 15 6.0 0.0 15 33 96 113 92 139 0.79 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pCP017026_00030 - 426 0.003 17.9 0.2 3 3 0.29 5.3e+03 -2.2 0.0 77 97 316 336 306 338 0.82 UvrA DNA-binding domain Ank_2 PF12796.7 83 pCP017026_00033 - 313 1.4e-11 44.8 0.4 1 2 8e-08 0.00029 21.4 0.0 32 82 140 197 71 198 0.81 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pCP017026_00033 - 313 1.4e-11 44.8 0.4 2 2 3e-10 1.1e-06 29.2 0.1 5 80 142 235 138 238 0.78 Ankyrin repeats (3 copies) Ank_3 PF13606.6 31 pCP017026_00033 - 313 5.4e-10 38.6 0.4 1 4 0.015 55 4.8 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 pCP017026_00033 - 313 5.4e-10 38.6 0.4 2 4 0.026 92 4.1 0.0 10 29 142 160 134 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pCP017026_00033 - 313 5.4e-10 38.6 0.4 3 4 2.6e-06 0.0094 16.4 0.0 2 30 168 195 167 196 0.94 Ankyrin repeat Ank_3 PF13606.6 31 pCP017026_00033 - 313 5.4e-10 38.6 0.4 4 4 0.0018 6.5 7.7 0.0 1 30 206 235 206 236 0.92 Ankyrin repeat Ank_4 PF13637.6 55 pCP017026_00033 - 313 0.0016 19.0 0.1 1 4 0.84 3e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP017026_00033 - 313 0.0016 19.0 0.1 2 4 0.00017 0.63 10.7 0.0 13 55 146 188 134 188 0.78 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP017026_00033 - 313 0.0016 19.0 0.1 3 4 9e-05 0.32 11.6 0.0 2 55 169 228 168 228 0.84 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP017026_00033 - 313 0.0016 19.0 0.1 4 4 0.02 70 4.2 0.0 3 28 209 235 206 244 0.89 Ankyrin repeats (many copies) Ank PF00023.30 32 pCP017026_00033 - 313 0.0035 17.7 0.0 1 3 0.023 84 3.9 0.0 10 25 142 158 130 166 0.83 Ankyrin repeat Ank PF00023.30 32 pCP017026_00033 - 313 0.0035 17.7 0.0 2 3 0.031 1.1e+02 3.5 0.0 3 31 169 198 167 199 0.82 Ankyrin repeat Ank PF00023.30 32 pCP017026_00033 - 313 0.0035 17.7 0.0 3 3 0.0048 17 6.0 0.0 15 28 221 235 206 238 0.69 Ankyrin repeat Ank_5 PF13857.6 56 pCP017026_00033 - 313 0.016 15.5 0.1 1 4 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP017026_00033 - 313 0.016 15.5 0.1 2 4 0.00045 1.6 9.1 0.0 23 54 141 173 139 175 0.92 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP017026_00033 - 313 0.016 15.5 0.1 3 4 0.00063 2.3 8.7 0.0 1 46 153 198 153 211 0.91 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP017026_00033 - 313 0.016 15.5 0.1 4 4 1.8 6.6e+03 -2.4 0.0 32 53 224 243 214 244 0.66 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 pCP017026_00034 - 567 1.6e-07 31.5 0.0 1 2 1 1.8e+04 -5.2 5.9 25 58 343 376 306 392 0.55 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pCP017026_00034 - 567 1.6e-07 31.5 0.0 2 2 9.1e-12 1.6e-07 31.5 0.0 13 84 416 489 397 491 0.81 Restriction endonuclease fold toxin 7 Ank_2 PF12796.7 83 pCP017026_00035 - 317 1.6e-14 54.2 0.1 1 3 1 3.1e+03 -1.1 0.0 34 48 26 40 19 64 0.65 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pCP017026_00035 - 317 1.6e-14 54.2 0.1 2 3 9.3e-09 2.8e-05 24.6 0.0 25 82 134 202 72 203 0.67 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pCP017026_00035 - 317 1.6e-14 54.2 0.1 3 3 5.1e-12 1.5e-08 35.1 0.0 6 80 148 239 139 242 0.78 Ankyrin repeats (3 copies) Ank_3 PF13606.6 31 pCP017026_00035 - 317 6.1e-10 38.5 0.0 1 4 0.033 98 4.0 0.0 8 26 77 97 72 101 0.82 Ankyrin repeat Ank_3 PF13606.6 31 pCP017026_00035 - 317 6.1e-10 38.5 0.0 2 4 0.12 3.6e+02 2.3 0.0 12 29 149 165 137 167 0.81 Ankyrin repeat Ank_3 PF13606.6 31 pCP017026_00035 - 317 6.1e-10 38.5 0.0 3 4 3.1e-07 0.00093 19.5 0.0 2 30 173 200 172 201 0.95 Ankyrin repeat Ank_3 PF13606.6 31 pCP017026_00035 - 317 6.1e-10 38.5 0.0 4 4 0.0045 13 6.7 0.0 3 30 212 239 210 240 0.89 Ankyrin repeat Ank_4 PF13637.6 55 pCP017026_00035 - 317 8.6e-06 26.2 0.0 1 3 1.3 3.8e+03 -1.4 0.0 8 21 78 93 71 104 0.57 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP017026_00035 - 317 8.6e-06 26.2 0.0 2 3 5.7e-07 0.0017 18.9 0.0 13 55 151 193 137 193 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP017026_00035 - 317 8.6e-06 26.2 0.0 3 3 0.043 1.3e+02 3.3 0.0 4 41 214 249 212 260 0.72 Ankyrin repeats (many copies) Ank PF00023.30 32 pCP017026_00035 - 317 3.4e-05 24.1 0.0 1 3 0.036 1.1e+02 3.5 0.0 10 25 143 163 138 170 0.73 Ankyrin repeat Ank PF00023.30 32 pCP017026_00035 - 317 3.4e-05 24.1 0.0 2 3 0.00084 2.5 8.7 0.0 2 31 173 203 172 204 0.87 Ankyrin repeat Ank PF00023.30 32 pCP017026_00035 - 317 3.4e-05 24.1 0.0 3 3 0.0022 6.7 7.4 0.0 5 28 214 239 211 242 0.76 Ankyrin repeat Ank_5 PF13857.6 56 pCP017026_00035 - 317 0.0018 18.6 0.3 1 5 0.31 9.3e+02 0.3 0.0 24 39 26 42 25 49 0.86 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP017026_00035 - 317 0.0018 18.6 0.3 2 5 0.69 2.1e+03 -0.8 0.0 26 42 83 100 77 102 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP017026_00035 - 317 0.0018 18.6 0.3 3 5 0.032 97 3.5 0.0 25 54 148 178 148 179 0.86 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP017026_00035 - 317 0.0018 18.6 0.3 4 5 4.3e-05 0.13 12.6 0.0 9 48 167 205 158 207 0.83 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP017026_00035 - 317 0.0018 18.6 0.3 5 5 2.9 8.6e+03 -2.7 0.0 37 54 233 248 228 250 0.47 Ankyrin repeats (many copies) APG17 PF04108.12 396 pCP017026_00035 - 317 0.017 14.2 0.7 1 1 8e-06 0.024 13.8 0.7 91 160 1 77 1 101 0.71 Autophagy protein Apg17 DUF2345 PF10106.9 151 pCP017026_00036 - 486 0.0046 16.8 2.2 1 1 2.7e-06 0.016 15.1 2.2 28 132 379 478 376 482 0.84 Uncharacterized protein conserved in bacteria (DUF2345) DUF3540 PF12059.8 199 pCP017026_00036 - 486 0.029 14.2 0.9 1 2 0.079 4.7e+02 0.5 0.0 31 45 138 152 136 159 0.80 Protein of unknown function (DUF3540) DUF3540 PF12059.8 199 pCP017026_00036 - 486 0.029 14.2 0.9 2 2 3.3e-05 0.2 11.5 0.2 60 128 387 454 381 467 0.85 Protein of unknown function (DUF3540) Gp5_C PF06715.12 24 pCP017026_00036 - 486 0.094 12.9 0.1 1 5 3 1.8e+04 -4.0 0.7 11 17 227 233 225 235 0.43 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pCP017026_00036 - 486 0.094 12.9 0.1 2 5 1.6e-05 0.094 12.9 0.1 3 24 261 282 259 290 0.67 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pCP017026_00036 - 486 0.094 12.9 0.1 3 5 0.062 3.7e+02 1.6 0.0 13 24 335 346 334 346 0.89 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pCP017026_00036 - 486 0.094 12.9 0.1 4 5 0.19 1.2e+03 0.1 0.1 1 18 346 364 346 364 0.83 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pCP017026_00036 - 486 0.094 12.9 0.1 5 5 0.1 6.3e+02 0.9 0.1 8 17 370 379 363 381 0.68 Gp5 C-terminal repeat (3 copies) Bacteriocin_IIc PF10439.9 62 pCP017026_00037 - 689 0.0019 18.2 10.8 1 2 4.5 1.4e+04 -3.7 0.3 27 36 34 43 28 45 0.52 Bacteriocin class II with double-glycine leader peptide Bacteriocin_IIc PF10439.9 62 pCP017026_00037 - 689 0.0019 18.2 10.8 2 2 6.5e-07 0.0019 18.2 10.8 23 61 155 192 151 193 0.91 Bacteriocin class II with double-glycine leader peptide Gly-zipper_Omp PF13488.6 46 pCP017026_00037 - 689 0.04 13.9 10.0 1 1 2.8e-05 0.084 12.9 10.0 8 36 161 191 161 199 0.66 Glycine zipper DUF3482 PF11981.8 294 pCP017026_00037 - 689 0.1 12.0 1.3 1 1 6.9e-05 0.21 11.0 1.3 143 190 149 192 145 215 0.87 Domain of unknown function (DUF3482) Gly-zipper_YMGG PF13441.6 46 pCP017026_00037 - 689 0.17 11.6 8.3 1 1 0.00012 0.36 10.6 8.3 12 40 161 190 152 195 0.82 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.15 42 pCP017026_00037 - 689 1.4 8.9 12.1 1 1 0.00089 2.7 7.9 12.1 4 39 161 191 160 192 0.87 Glycine zipper 2TM domain DUF1269 PF06897.12 100 pCP017026_00037 - 689 5.8 7.3 7.3 1 2 0.0045 13 6.1 5.6 3 35 162 192 160 210 0.81 Protein of unknown function (DUF1269) DUF1269 PF06897.12 100 pCP017026_00037 - 689 5.8 7.3 7.3 2 2 1.2 3.7e+03 -1.7 0.0 40 93 307 357 299 362 0.61 Protein of unknown function (DUF1269) Phage_GPD PF05954.11 304 pCP017026_00039 - 837 5.4e-18 65.3 0.0 1 1 9.6e-22 8.6e-18 64.7 0.0 21 281 72 360 45 376 0.76 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 pCP017026_00039 - 837 0.11 12.1 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 pCP017026_00039 - 837 0.11 12.1 0.0 2 2 0.00043 3.9 7.2 0.0 19 49 461 491 452 517 0.81 TCL1/MTCP1 family T6SS_TssG PF06996.11 299 pCP017026_00040 - 302 1.9e-47 161.9 0.0 1 1 1.2e-51 2.2e-47 161.8 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG T6SS_TssF PF05947.12 603 pCP017026_00041 - 573 2.3e-110 369.9 0.0 1 1 1.5e-114 2.6e-110 369.8 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF GPW_gp25 PF04965.14 95 pCP017026_00042 - 130 1.2e-09 37.8 0.0 1 1 2.6e-13 1.5e-09 37.5 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 pCP017026_00042 - 130 0.0076 16.1 0.3 1 1 1.6e-06 0.0097 15.8 0.3 93 159 20 87 6 92 0.89 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 pCP017026_00042 - 130 0.051 13.0 0.1 1 2 2.1e-05 0.12 11.8 0.1 82 121 5 46 1 64 0.83 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 pCP017026_00042 - 130 0.051 13.0 0.1 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 422 pCP017026_00043 - 484 1e-169 564.9 0.0 1 1 1.3e-173 1.2e-169 564.6 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 pCP017026_00043 - 484 0.096 12.7 0.8 1 3 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pCP017026_00043 - 484 0.096 12.7 0.8 2 3 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pCP017026_00043 - 484 0.096 12.7 0.8 3 3 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 155 pCP017026_00044 - 161 1.2e-51 174.6 3.8 1 1 1.5e-55 1.3e-51 174.4 3.8 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 pCP017026_00044 - 161 0.082 11.5 0.0 1 1 1.1e-05 0.099 11.2 0.0 171 227 55 111 40 127 0.90 Chitin synthase T6SS_VasJ PF16989.5 255 pCP017026_00045 - 415 1.2e-12 47.9 0.0 1 1 3.9e-16 1.7e-12 47.3 0.0 3 153 176 323 174 408 0.84 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 pCP017026_00045 - 415 0.00014 22.0 0.2 1 2 1.8e-07 0.0008 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 pCP017026_00045 - 415 0.00014 22.0 0.2 2 2 0.31 1.4e+03 -0.6 0.0 47 71 185 209 162 212 0.83 ImpA, N-terminal, type VI secretion system PX PF00787.24 113 pCP017026_00045 - 415 0.074 13.0 14.5 1 3 0.00025 1.1 9.2 2.4 31 111 33 130 20 131 0.67 PX domain PX PF00787.24 113 pCP017026_00045 - 415 0.074 13.0 14.5 2 3 0.00084 3.8 7.5 0.2 16 112 155 275 132 276 0.68 PX domain PX PF00787.24 113 pCP017026_00045 - 415 0.074 13.0 14.5 3 3 0.052 2.3e+02 1.8 0.7 22 97 316 396 296 404 0.70 PX domain TetR_C_24 PF17932.1 114 pCP017026_00045 - 415 0.19 12.0 0.0 1 1 8.8e-05 0.4 11.0 0.0 20 68 71 119 62 132 0.87 Tetracyclin repressor-like, C-terminal domain T6SS-SciN PF12790.7 120 pCP017026_00046 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 428 pCP017026_00047 - 465 1.3e-112 376.6 0.0 1 1 8.6e-117 1.5e-112 376.4 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 205 pCP017026_00048 - 257 1.1e-34 120.0 0.0 1 1 6.9e-39 1.2e-34 119.8 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_HCP PF05638.12 129 pCP017026_00049 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 259 pCP017026_00050 - 1175 6.2e-41 140.5 0.0 1 1 4.1e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 pCP017026_00050 - 1175 5.9e-40 137.0 0.5 1 1 4.1e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 pCP017026_00050 - 1175 8.2e-27 94.5 2.1 1 1 4.9e-30 1.3e-26 93.9 2.1 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 pCP017026_00050 - 1175 0.0003 20.7 0.0 1 2 8.9e-06 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 pCP017026_00050 - 1175 0.0003 20.7 0.0 2 2 0.047 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 pCP017026_00050 - 1175 0.0011 19.0 0.1 1 2 1.7e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 pCP017026_00050 - 1175 0.0011 19.0 0.1 2 2 4.1 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 pCP017026_00050 - 1175 0.0033 17.1 5.0 1 3 1.4e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 pCP017026_00050 - 1175 0.0033 17.1 5.0 2 3 0.078 2e+02 1.5 0.0 41 78 451 488 431 588 0.81 O-Antigen ligase Wzy_C PF04932.15 155 pCP017026_00050 - 1175 0.0033 17.1 5.0 3 3 0.076 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 pCP017026_00050 - 1175 0.055 13.2 0.1 1 2 0.00017 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pCP017026_00050 - 1175 0.055 13.2 0.1 2 2 0.72 1.8e+03 -1.3 0.0 22 37 841 856 831 873 0.75 P-loop containing region of AAA domain FHA PF00498.26 69 pCP017026_00051 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 pCP017026_00051 - 299 0.0007 19.9 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 pCP017026_00051 - 299 0.0007 19.9 0.0 2 2 0.23 1.4e+03 -0.3 0.0 31 57 199 225 198 231 0.89 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 pCP017026_00051 - 299 0.05 14.0 3.1 1 2 0.044 2.6e+02 2.1 0.1 18 58 107 147 105 150 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 pCP017026_00051 - 299 0.05 14.0 3.1 2 2 7.4e-05 0.44 11.0 0.9 21 82 151 212 146 218 0.92 Ferredoxin-fold anticodon binding domain Y1_Tnp PF01797.16 121 pCP017026_00054 - 158 8.8e-37 125.9 2.5 1 1 6.8e-41 1.2e-36 125.4 2.5 2 121 13 133 12 133 0.95 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 69 pCP017026_00055 - 415 2.2e-22 78.7 1.3 1 1 2.3e-25 4.6e-22 77.7 1.3 1 69 324 393 324 393 0.98 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 pCP017026_00055 - 415 5.9e-13 49.1 2.4 1 1 7.1e-16 1.4e-12 47.9 2.4 10 118 187 302 172 304 0.76 Probable transposase HTH_OrfB_IS605 PF12323.8 47 pCP017026_00055 - 415 3.8e-10 39.1 2.8 1 1 4.2e-13 8.4e-10 38.0 2.8 1 46 1 47 1 48 0.95 Helix-turn-helix domain HypA PF01155.19 112 pCP017026_00055 - 415 0.022 14.8 0.4 1 1 2.7e-05 0.053 13.5 0.4 19 96 298 380 281 391 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 4_1_CTD PF05902.13 107 pCP017026_00055 - 415 0.058 13.5 0.1 1 3 0.00018 0.35 11.0 0.0 35 96 47 108 16 115 0.83 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 pCP017026_00055 - 415 0.058 13.5 0.1 2 3 2 4e+03 -2.1 0.0 25 37 178 190 158 231 0.62 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 pCP017026_00055 - 415 0.058 13.5 0.1 3 3 2.8 5.5e+03 -2.5 0.0 51 66 333 348 331 355 0.83 4.1 protein C-terminal domain (CTD) Zn_ribbon_17 PF17120.5 58 pCP017026_00055 - 415 0.071 12.7 0.5 1 1 6.8e-05 0.14 11.8 0.5 4 32 351 384 348 395 0.81 Zinc-ribbon, C4HC2 type DUF1161 PF06649.12 52 pCP017026_00055 - 415 0.12 12.6 0.8 1 1 0.00016 0.32 11.2 0.8 3 32 270 299 269 311 0.89 Protein of unknown function (DUF1161) Prok-RING_1 PF14446.6 54 pCP017026_00055 - 415 0.16 11.9 3.2 1 1 0.00018 0.36 10.8 3.2 2 33 349 383 348 388 0.83 Prokaryotic RING finger family 1 Spt4 PF06093.13 77 pCP017026_00055 - 415 0.82 9.8 4.4 1 2 3.3 6.5e+03 -2.7 0.0 55 70 78 93 76 98 0.76 Spt4/RpoE2 zinc finger Spt4 PF06093.13 77 pCP017026_00055 - 415 0.82 9.8 4.4 2 2 0.00041 0.81 9.8 2.2 2 30 352 382 351 393 0.79 Spt4/RpoE2 zinc finger Fic PF02661.18 97 pCP017026_00056 - 264 8.4e-24 84.3 0.1 1 1 2.3e-27 2.1e-23 83.0 0.1 2 96 95 191 94 192 0.96 Fic/DOC family S_layer_C PF05124.12 220 pCP017026_00056 - 264 6.6 6.6 8.7 1 2 6.2e-05 0.56 10.2 2.0 12 114 2 116 1 132 0.69 S-layer like family, C-terminal region S_layer_C PF05124.12 220 pCP017026_00056 - 264 6.6 6.6 8.7 2 2 0.065 5.8e+02 0.3 0.6 158 182 230 253 229 260 0.77 S-layer like family, C-terminal region Y1_Tnp PF01797.16 121 pCP017026_00057 - 158 8.8e-37 125.9 2.5 1 1 6.8e-41 1.2e-36 125.4 2.5 2 121 13 133 12 133 0.95 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 69 pCP017026_00058 - 415 2.2e-22 78.7 1.3 1 1 2.3e-25 4.6e-22 77.7 1.3 1 69 324 393 324 393 0.98 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 pCP017026_00058 - 415 5.9e-13 49.1 2.4 1 1 7.1e-16 1.4e-12 47.9 2.4 10 118 187 302 172 304 0.76 Probable transposase HTH_OrfB_IS605 PF12323.8 47 pCP017026_00058 - 415 3.8e-10 39.1 2.8 1 1 4.2e-13 8.4e-10 38.0 2.8 1 46 1 47 1 48 0.95 Helix-turn-helix domain HypA PF01155.19 112 pCP017026_00058 - 415 0.022 14.8 0.4 1 1 2.7e-05 0.053 13.5 0.4 19 96 298 380 281 391 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 4_1_CTD PF05902.13 107 pCP017026_00058 - 415 0.058 13.5 0.1 1 3 0.00018 0.35 11.0 0.0 35 96 47 108 16 115 0.83 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 pCP017026_00058 - 415 0.058 13.5 0.1 2 3 2 4e+03 -2.1 0.0 25 37 178 190 158 231 0.62 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 pCP017026_00058 - 415 0.058 13.5 0.1 3 3 2.8 5.5e+03 -2.5 0.0 51 66 333 348 331 355 0.83 4.1 protein C-terminal domain (CTD) Zn_ribbon_17 PF17120.5 58 pCP017026_00058 - 415 0.071 12.7 0.5 1 1 6.8e-05 0.14 11.8 0.5 4 32 351 384 348 395 0.81 Zinc-ribbon, C4HC2 type DUF1161 PF06649.12 52 pCP017026_00058 - 415 0.12 12.6 0.8 1 1 0.00016 0.32 11.2 0.8 3 32 270 299 269 311 0.89 Protein of unknown function (DUF1161) Prok-RING_1 PF14446.6 54 pCP017026_00058 - 415 0.16 11.9 3.2 1 1 0.00018 0.36 10.8 3.2 2 33 349 383 348 388 0.83 Prokaryotic RING finger family 1 Spt4 PF06093.13 77 pCP017026_00058 - 415 0.82 9.8 4.4 1 2 3.3 6.5e+03 -2.7 0.0 55 70 78 93 76 98 0.76 Spt4/RpoE2 zinc finger Spt4 PF06093.13 77 pCP017026_00058 - 415 0.82 9.8 4.4 2 2 0.00041 0.81 9.8 2.2 2 30 352 382 351 393 0.79 Spt4/RpoE2 zinc finger Fic PF02661.18 97 pCP017026_00059 - 264 8.4e-24 84.3 0.1 1 1 2.3e-27 2.1e-23 83.0 0.1 2 96 95 191 94 192 0.96 Fic/DOC family S_layer_C PF05124.12 220 pCP017026_00059 - 264 6.6 6.6 8.7 1 2 6.2e-05 0.56 10.2 2.0 12 114 2 116 1 132 0.69 S-layer like family, C-terminal region S_layer_C PF05124.12 220 pCP017026_00059 - 264 6.6 6.6 8.7 2 2 0.065 5.8e+02 0.3 0.6 158 182 230 253 229 260 0.77 S-layer like family, C-terminal region Y1_Tnp PF01797.16 121 pCP017026_00060 - 158 8.8e-37 125.9 2.5 1 1 6.8e-41 1.2e-36 125.4 2.5 2 121 13 133 12 133 0.95 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 69 pCP017026_00061 - 415 2.2e-22 78.7 1.3 1 1 2.3e-25 4.6e-22 77.7 1.3 1 69 324 393 324 393 0.98 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 pCP017026_00061 - 415 5.9e-13 49.1 2.4 1 1 7.1e-16 1.4e-12 47.9 2.4 10 118 187 302 172 304 0.76 Probable transposase HTH_OrfB_IS605 PF12323.8 47 pCP017026_00061 - 415 3.8e-10 39.1 2.8 1 1 4.2e-13 8.4e-10 38.0 2.8 1 46 1 47 1 48 0.95 Helix-turn-helix domain HypA PF01155.19 112 pCP017026_00061 - 415 0.022 14.8 0.4 1 1 2.7e-05 0.053 13.5 0.4 19 96 298 380 281 391 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 4_1_CTD PF05902.13 107 pCP017026_00061 - 415 0.058 13.5 0.1 1 3 0.00018 0.35 11.0 0.0 35 96 47 108 16 115 0.83 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 pCP017026_00061 - 415 0.058 13.5 0.1 2 3 2 4e+03 -2.1 0.0 25 37 178 190 158 231 0.62 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 pCP017026_00061 - 415 0.058 13.5 0.1 3 3 2.8 5.5e+03 -2.5 0.0 51 66 333 348 331 355 0.83 4.1 protein C-terminal domain (CTD) Zn_ribbon_17 PF17120.5 58 pCP017026_00061 - 415 0.071 12.7 0.5 1 1 6.8e-05 0.14 11.8 0.5 4 32 351 384 348 395 0.81 Zinc-ribbon, C4HC2 type DUF1161 PF06649.12 52 pCP017026_00061 - 415 0.12 12.6 0.8 1 1 0.00016 0.32 11.2 0.8 3 32 270 299 269 311 0.89 Protein of unknown function (DUF1161) Prok-RING_1 PF14446.6 54 pCP017026_00061 - 415 0.16 11.9 3.2 1 1 0.00018 0.36 10.8 3.2 2 33 349 383 348 388 0.83 Prokaryotic RING finger family 1 Spt4 PF06093.13 77 pCP017026_00061 - 415 0.82 9.8 4.4 1 2 3.3 6.5e+03 -2.7 0.0 55 70 78 93 76 98 0.76 Spt4/RpoE2 zinc finger Spt4 PF06093.13 77 pCP017026_00061 - 415 0.82 9.8 4.4 2 2 0.00041 0.81 9.8 2.2 2 30 352 382 351 393 0.79 Spt4/RpoE2 zinc finger DUF3492 PF11997.8 268 pCP017026_00062 - 671 0.19 11.4 2.9 1 1 5.5e-05 0.5 10.1 2.9 33 164 64 199 59 210 0.76 Domain of unknown function (DUF3492) CLZ PF16526.5 71 pCP017026_00062 - 671 0.99 9.8 4.8 1 2 0.01 90 3.5 0.6 30 58 122 150 104 162 0.78 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CLZ PF16526.5 71 pCP017026_00062 - 671 0.99 9.8 4.8 2 2 0.0012 11 6.5 0.2 22 56 530 564 522 570 0.86 C-terminal leucine zipper domain of cyclic nucleotide-gated channels MeMO_Hyd_G PF02964.16 161 pCP017026_00063 - 476 0.078 13.0 0.7 1 2 1.9e-05 0.17 11.9 0.1 47 106 120 180 107 186 0.87 Methane monooxygenase, hydrolase gamma chain MeMO_Hyd_G PF02964.16 161 pCP017026_00063 - 476 0.078 13.0 0.7 2 2 0.47 4.2e+03 -2.4 0.1 25 34 348 357 319 400 0.63 Methane monooxygenase, hydrolase gamma chain Vta1 PF04652.16 145 pCP017026_00063 - 476 2.5 8.1 10.2 1 3 0.31 2.7e+03 -1.8 0.2 116 136 148 169 137 174 0.78 Vta1 like Vta1 PF04652.16 145 pCP017026_00063 - 476 2.5 8.1 10.2 2 3 0.16 1.5e+03 -0.9 0.2 29 60 317 356 312 369 0.67 Vta1 like Vta1 PF04652.16 145 pCP017026_00063 - 476 2.5 8.1 10.2 3 3 4.8e-06 0.043 13.8 1.0 8 79 392 467 384 470 0.79 Vta1 like DUF2974 PF11187.8 224 pCP017026_00064 - 511 1.4e-06 28.0 0.0 1 1 1.5e-09 3.4e-06 26.8 0.0 6 109 79 192 75 260 0.72 Protein of unknown function (DUF2974) Lipase_3 PF01764.25 142 pCP017026_00064 - 511 1e-05 25.4 0.0 1 1 2.1e-08 4.6e-05 23.3 0.0 45 107 148 218 108 243 0.78 Lipase (class 3) DUF676 PF05057.14 219 pCP017026_00064 - 511 0.0019 17.7 0.0 1 1 2.1e-06 0.0046 16.5 0.0 70 116 158 205 129 247 0.73 Putative serine esterase (DUF676) PGAP1 PF07819.13 231 pCP017026_00064 - 511 0.0036 17.0 0.1 1 2 5e-05 0.11 12.2 0.0 69 116 148 193 144 201 0.76 PGAP1-like protein PGAP1 PF07819.13 231 pCP017026_00064 - 511 0.0036 17.0 0.1 2 2 0.06 1.4e+02 2.1 0.2 27 83 269 326 247 340 0.76 PGAP1-like protein DUF4450 PF14614.6 217 pCP017026_00064 - 511 0.016 14.8 0.2 1 2 2.9 6.5e+03 -3.5 0.0 156 173 340 357 330 359 0.71 Domain of unknown function (DUF4450) DUF4450 PF14614.6 217 pCP017026_00064 - 511 0.016 14.8 0.2 2 2 2.1e-05 0.047 13.3 0.1 6 48 446 488 443 495 0.94 Domain of unknown function (DUF4450) UPF0227 PF05728.12 187 pCP017026_00064 - 511 0.028 14.4 0.1 1 2 9.1e-05 0.2 11.6 0.0 48 80 157 189 133 196 0.80 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pCP017026_00064 - 511 0.028 14.4 0.1 2 2 0.39 8.7e+02 -0.3 0.0 115 145 391 422 368 439 0.73 Uncharacterised protein family (UPF0227) PAF-AH_p_II PF03403.13 379 pCP017026_00064 - 511 0.028 13.0 0.0 1 1 2.2e-05 0.05 12.1 0.0 185 244 120 184 94 210 0.77 Platelet-activating factor acetylhydrolase, isoform II Abhydrolase_6 PF12697.7 220 pCP017026_00064 - 511 0.049 14.2 0.0 1 1 3.1e-05 0.069 13.7 0.0 49 86 148 189 103 236 0.62 Alpha/beta hydrolase family DUF2974 PF11187.8 224 pCP017026_00065 - 202 0.00072 19.2 0.1 1 1 1.9e-07 0.0011 18.5 0.1 7 94 100 196 95 198 0.73 Protein of unknown function (DUF2974) DUF676 PF05057.14 219 pCP017026_00065 - 202 0.044 13.3 0.0 1 1 1.4e-05 0.086 12.3 0.0 63 91 170 198 130 200 0.73 Putative serine esterase (DUF676) Lipase_3 PF01764.25 142 pCP017026_00065 - 202 0.1 12.4 0.2 1 1 4.6e-05 0.28 11.1 0.1 50 75 172 196 121 197 0.77 Lipase (class 3) Put_DNA-bind_N PF06971.13 49 pCP017026_00069 - 141 0.034 14.2 0.0 1 1 3.2e-06 0.058 13.4 0.0 11 34 4 27 3 30 0.94 Putative DNA-binding protein N-terminus AAA_31 PF13614.6 177 pCP017026_00071 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 pCP017026_00071 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pCP017026_00071 - 186 0.0021 18.1 0.9 1 1 2.9e-06 0.017 15.2 0.9 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP017026_00071 - 186 0.014 14.8 0.0 1 1 3.2e-06 0.019 14.4 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase RHH_7 PF16777.5 74 pCP017026_00072 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_25 PF13481.6 194 pCP017026_00073 - 597 4.8e-15 55.7 0.0 1 1 5.6e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP017026_00073 - 597 0.0003 20.2 0.0 1 2 9.8e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP017026_00073 - 597 0.0003 20.2 0.0 2 2 0.013 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP017026_00073 - 597 0.0023 17.7 0.0 1 2 7.2e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP017026_00073 - 597 0.0023 17.7 0.0 2 2 0.7 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pCP017026_00073 - 597 0.0091 15.4 0.4 1 3 3.7e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 pCP017026_00073 - 597 0.0091 15.4 0.4 2 3 0.81 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC ATPase PF06745.13 231 pCP017026_00073 - 597 0.0091 15.4 0.4 3 3 2.1 4.2e+03 -3.2 0.1 64 122 377 434 373 452 0.51 KaiC AAA PF00004.29 132 pCP017026_00073 - 597 0.021 15.2 0.5 1 3 0.00017 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP017026_00073 - 597 0.021 15.2 0.5 2 3 0.33 6.7e+02 0.7 0.0 47 74 411 434 377 455 0.71 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP017026_00073 - 597 0.021 15.2 0.5 3 3 4.5 9e+03 -3.0 0.0 23 49 495 523 475 527 0.69 ATPase family associated with various cellular activities (AAA) ApoC-I PF04691.12 61 pCP017026_00073 - 597 0.16 11.9 3.3 1 3 0.0026 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP017026_00073 - 597 0.16 11.9 3.3 2 3 0.22 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP017026_00073 - 597 0.16 11.9 3.3 3 3 0.2 4e+02 1.0 0.1 7 23 519 535 516 541 0.76 Apolipoprotein C-I (ApoC-1) CbiA PF01656.23 128 pCP017026_00073 - 597 0.24 11.4 2.2 1 1 0.00053 1.1 9.4 2.2 1 29 35 63 35 548 0.91 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pCP017026_00073 - 597 0.7 9.5 5.5 1 2 0.0067 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pCP017026_00073 - 597 0.7 9.5 5.5 2 2 0.0087 17 5.1 1.5 16 28 517 529 511 531 0.91 VASP tetramerisation domain DUF1947 PF09183.10 66 pCP017026_00073 - 597 0.73 10.2 6.3 1 2 0.15 3e+02 1.8 0.2 23 46 245 269 237 271 0.78 Domain of unknown function (DUF1947) DUF1947 PF09183.10 66 pCP017026_00073 - 597 0.73 10.2 6.3 2 2 0.00085 1.7 9.0 1.7 7 42 517 550 515 567 0.87 Domain of unknown function (DUF1947) HicA_toxin PF07927.12 58 pCP017026_00074 - 67 6.1e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pCP017026_00075 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 pCP017026_00077 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 pCP017026_00077 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 pCP017026_00077 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) nec1 PF10379.9 184 pCP017026_00078 - 70 0.036 13.6 0.0 1 1 2.2e-06 0.039 13.5 0.0 65 105 29 67 8 69 0.74 Virulence protein nec1 Toprim_3 PF13362.6 95 pCP017026_00080 - 406 3.2e-08 33.8 0.0 1 1 1.7e-11 6.2e-08 32.9 0.0 3 93 270 374 268 376 0.87 Toprim domain Toprim_4 PF13662.6 89 pCP017026_00080 - 406 0.12 12.9 0.1 1 1 7.1e-05 0.25 11.8 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pCP017026_00080 - 406 0.12 13.0 3.6 1 2 0.037 1.3e+02 3.2 0.4 52 85 140 172 121 201 0.70 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP017026_00080 - 406 0.12 13.0 3.6 2 2 0.00034 1.2 9.8 0.2 15 80 321 382 319 402 0.70 5'-3' exonuclease, C-terminal SAM fold Paz_1 PF18349.1 93 pCP017026_00080 - 406 0.12 12.3 0.9 1 2 9.2e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Paz_1 PF18349.1 93 pCP017026_00080 - 406 0.12 12.3 0.9 2 2 2.7 9.6e+03 -3.4 0.0 36 42 237 243 223 260 0.57 PAZ domain TSC21 PF15217.6 180 pCP017026_00080 - 406 0.17 11.8 0.2 1 1 8.2e-05 0.29 11.0 0.2 38 86 145 193 129 208 0.83 TSC21 family CdvA PF18822.1 123 pCP017026_00082 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP017026_00082 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 pCP017026_00082 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 pCP017026_00082 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP017026_00082 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 pCP017026_00083 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP017026_00083 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP017026_00083 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP017026_00083 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP017026_00083 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP017026_00083 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP017026_00083 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pCP017026_00083 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP017026_00083 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 pCP017026_00083 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP017026_00083 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain Relaxase PF03432.14 242 pCP017026_00084 - 462 3.7e-10 39.8 7.6 1 2 2.1e-14 3.7e-10 39.8 7.6 47 229 118 297 70 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP017026_00084 - 462 3.7e-10 39.8 7.6 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain Peptidase_C39 PF03412.15 133 pCP017026_00086 - 188 4.3e-18 65.4 0.0 1 1 9.4e-22 5.6e-18 65.0 0.0 2 124 24 153 23 167 0.81 Peptidase C39 family Peptidase_C70 PF12385.8 145 pCP017026_00086 - 188 9.8e-05 22.4 0.0 1 1 2.4e-08 0.00014 21.9 0.0 11 131 28 138 11 149 0.78 Papain-like cysteine protease AvrRpt2 Peptidase_C39_2 PF13529.6 144 pCP017026_00086 - 188 0.046 14.3 0.0 1 1 1.7e-05 0.099 13.2 0.0 6 143 27 134 22 135 0.72 Peptidase_C39 like family GramPos_pilinBB PF16569.5 115 pCP017026_00089 - 236 0.016 16.0 3.9 1 2 2.1e-05 0.19 12.6 1.9 56 113 16 74 2 75 0.79 Gram-positive pilin backbone subunit 2, Cna-B-like domain GramPos_pilinBB PF16569.5 115 pCP017026_00089 - 236 0.016 16.0 3.9 2 2 0.016 1.4e+02 3.3 0.0 23 66 113 157 95 188 0.77 Gram-positive pilin backbone subunit 2, Cna-B-like domain DUF2768 PF10966.8 58 pCP017026_00089 - 236 0.052 14.0 0.6 1 1 1.2e-05 0.11 13.0 0.6 23 52 205 234 203 235 0.91 Protein of unknown function (DUF2768) SNF2_N PF00176.23 350 pCP017026_00090 - 1932 2.6e-16 59.3 1.7 1 3 1.2e-19 4.4e-16 58.5 0.1 57 245 1018 1273 935 1314 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP017026_00090 - 1932 2.6e-16 59.3 1.7 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP017026_00090 - 1932 2.6e-16 59.3 1.7 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP017026_00090 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.2e+03 -3.4 0.2 54 75 649 690 638 782 0.55 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP017026_00090 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP017026_00090 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP017026_00090 - 1932 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP017026_00090 - 1932 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP017026_00090 - 1932 7.6e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP017026_00090 - 1932 7.6e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP017026_00090 - 1932 2.2e-05 24.9 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 372 472 370 475 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP017026_00090 - 1932 2.2e-05 24.9 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 pCP017026_00091 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 pCP017026_00092 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP017026_00092 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP017026_00092 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP017026_00092 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP017026_00092 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP017026_00092 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pCP017026_00093 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP017026_00093 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 pCP017026_00094 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP017026_00094 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP017026_00094 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP017026_00094 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP017026_00094 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP017026_00094 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 pCP017026_00095 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP017026_00095 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP017026_00095 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pCP017026_00095 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pCP017026_00095 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pCP017026_00095 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP017026_00095 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP017026_00095 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP017026_00095 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 pCP017026_00096 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCP017026_00096 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain CtsR_C PF17727.1 72 pCP017026_00097 - 120 0.047 13.8 0.3 1 2 0.00025 4.4 7.5 0.0 3 38 25 60 22 67 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP017026_00097 - 120 0.047 13.8 0.3 2 2 0.0022 40 4.4 0.0 28 48 68 88 65 102 0.85 CtsR C-terminal dimerization domain W2 PF02020.18 79 pCP017026_00098 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pCP017026_00098 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pCP017026_00098 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain GTP_EFTU PF00009.27 194 pCP017026_00101 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP017026_00101 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP017026_00101 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP017026_00101 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP017026_00101 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP017026_00101 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP017026_00101 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP017026_00101 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP017026_00101 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP017026_00101 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 pCP017026_00103 - 351 1.2e-05 25.3 2.3 1 1 3.6e-09 3.2e-05 23.8 2.3 3 133 208 334 206 344 0.67 PcfJ-like protein Intein_splicing PF14890.6 134 pCP017026_00103 - 351 0.03 14.3 4.7 1 2 0.1 9.3e+02 -0.3 0.1 11 60 95 149 88 152 0.72 Intein splicing domain Intein_splicing PF14890.6 134 pCP017026_00103 - 351 0.03 14.3 4.7 2 2 3.3e-06 0.03 14.3 1.1 37 125 195 322 161 330 0.74 Intein splicing domain Topoisom_bac PF01131.20 413 pCP017026_00105 - 730 9e-97 324.7 8.0 1 1 1.2e-99 1.3e-96 324.2 8.0 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP017026_00105 - 730 9.7e-12 45.0 0.1 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP017026_00105 - 730 9.7e-12 45.0 0.1 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP017026_00105 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP017026_00105 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP017026_00105 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP017026_00105 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP017026_00105 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP017026_00105 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP017026_00105 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP017026_00105 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP017026_00105 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pCP017026_00105 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pCP017026_00105 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain EF-hand_8 PF13833.6 55 pCP017026_00105 - 730 0.052 13.4 0.2 1 2 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair EF-hand_8 PF13833.6 55 pCP017026_00105 - 730 0.052 13.4 0.2 2 2 1.7 1.8e+03 -1.2 0.0 24 36 342 354 332 355 0.83 EF-hand domain pair zf-C2H2_4 PF13894.6 24 pCP017026_00105 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP017026_00105 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP017026_00105 - 730 0.086 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP017026_00105 - 730 0.086 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 pCP017026_00105 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP017026_00105 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pCP017026_00105 - 730 0.38 11.0 3.0 1 3 1.9 2e+03 -1.0 0.0 26 47 362 383 354 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP017026_00105 - 730 0.38 11.0 3.0 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP017026_00105 - 730 0.38 11.0 3.0 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP017026_00105 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP017026_00105 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP017026_00105 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP017026_00105 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP017026_00105 - 730 0.76 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP017026_00105 - 730 0.76 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP017026_00105 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP017026_00105 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP017026_00105 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP017026_00105 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type DUF1461 PF07314.11 189 pCP017026_00106 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) CdhD PF03599.16 386 pCP017026_00107 - 206 0.004 15.9 0.0 1 1 7.2e-07 0.0064 15.2 0.0 283 358 11 87 2 96 0.88 CO dehydrogenase/acetyl-CoA synthase delta subunit Redoxin PF08534.10 147 pCP017026_00107 - 206 0.056 13.2 0.7 1 2 0.065 5.9e+02 0.1 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP017026_00107 - 206 0.056 13.2 0.7 2 2 3.9e-05 0.35 10.6 0.1 49 76 144 173 138 191 0.79 Redoxin PRELI PF04707.14 157 pCP017026_00108 - 265 0.044 13.6 0.3 1 2 0.33 2e+03 -1.5 0.1 94 133 10 45 4 72 0.50 PRELI-like family PRELI PF04707.14 157 pCP017026_00108 - 265 0.044 13.6 0.3 2 2 7.4e-06 0.044 13.6 0.3 96 155 83 147 78 149 0.87 PRELI-like family TACC_C PF05010.14 201 pCP017026_00108 - 265 1.3 8.8 9.6 1 2 0.00056 3.3 7.4 8.5 14 124 2 111 1 135 0.79 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 pCP017026_00108 - 265 1.3 8.8 9.6 2 2 0.053 3.2e+02 1.0 1.1 8 45 100 139 94 148 0.70 Transforming acidic coiled-coil-containing protein (TACC), C-terminal IFT20 PF14931.6 119 pCP017026_00108 - 265 4.9 7.3 10.2 1 3 0.081 4.9e+02 0.9 0.3 20 47 18 45 2 56 0.57 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 pCP017026_00108 - 265 4.9 7.3 10.2 2 3 0.00026 1.5 9.0 0.5 25 53 89 117 81 120 0.91 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 pCP017026_00108 - 265 4.9 7.3 10.2 3 3 0.027 1.6e+02 2.4 0.3 22 43 119 140 115 164 0.78 Intraflagellar transport complex B, subunit 20 TrbM PF07424.11 156 pCP017026_00109 - 252 3.9e-38 130.8 2.1 1 1 5.6e-42 5e-38 130.5 2.1 1 154 25 190 25 192 0.88 TrbM HpaB PF03241.13 202 pCP017026_00109 - 252 0.17 10.9 0.1 1 2 0.047 4.2e+02 -0.1 0.0 20 39 17 36 4 37 0.76 4-hydroxyphenylacetate 3-hydroxylase C terminal HpaB PF03241.13 202 pCP017026_00109 - 252 0.17 10.9 0.1 2 2 0.00011 1 8.4 0.0 56 101 116 161 102 164 0.88 4-hydroxyphenylacetate 3-hydroxylase C terminal Cag12 PF13117.6 97 pCP017026_00110 - 143 2.9e-16 59.8 0.3 1 1 4.1e-20 3.7e-16 59.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pCP017026_00110 - 143 0.078 12.8 0.4 1 1 2.3e-05 0.2 11.4 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) T4SS-DNA_transf PF02534.14 469 pCP017026_00111 - 567 6.8e-104 348.3 0.1 1 1 1.5e-107 9.2e-104 347.8 0.1 3 460 58 527 46 535 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP017026_00111 - 567 3.1e-24 85.3 0.0 1 1 1e-27 6.1e-24 84.4 0.0 2 125 370 492 369 493 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP017026_00111 - 567 2.6e-15 56.3 0.0 1 2 1.1e-06 0.0065 15.4 0.0 41 157 113 241 89 262 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP017026_00111 - 567 2.6e-15 56.3 0.0 2 2 8.6e-14 5.1e-10 38.8 0.0 187 369 311 495 274 507 0.81 Type IV secretion-system coupling protein DNA-binding domain T2SSE PF00437.20 273 pCP017026_00112 - 335 7.7e-55 185.9 0.0 1 1 1.5e-57 8.9e-55 185.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP017026_00112 - 335 7.4e-05 23.3 0.0 1 1 2.6e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP017026_00112 - 335 0.00012 21.6 0.0 1 1 3e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP017026_00112 - 335 0.00028 20.5 0.0 1 1 8.8e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP017026_00112 - 335 0.0014 18.9 0.0 1 1 4.5e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 pCP017026_00112 - 335 0.0014 18.4 0.0 1 1 3.9e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pCP017026_00112 - 335 0.0023 17.7 0.0 1 1 9.2e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pCP017026_00112 - 335 0.0035 17.3 0.0 1 1 1.2e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP017026_00112 - 335 0.0055 15.7 0.0 1 1 1.3e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP017026_00112 - 335 0.0073 16.2 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP017026_00112 - 335 0.0087 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP017026_00112 - 335 0.0092 15.9 0.0 1 1 2.3e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pCP017026_00112 - 335 0.019 15.1 0.0 1 1 6.1e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain AAA_14 PF13173.6 131 pCP017026_00112 - 335 0.02 14.9 0.1 1 2 3 1.8e+03 -1.1 0.0 73 104 35 65 15 73 0.83 AAA domain AAA_14 PF13173.6 131 pCP017026_00112 - 335 0.02 14.9 0.1 2 2 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain TrwB_AAD_bind PF10412.9 386 pCP017026_00112 - 335 0.021 13.8 0.0 1 1 5.9e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.6 61 pCP017026_00112 - 335 0.024 14.4 0.0 1 1 8.8e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain ResIII PF04851.15 171 pCP017026_00112 - 335 0.026 14.5 0.0 1 1 9.1e-05 0.053 13.5 0.0 5 50 147 186 132 244 0.73 Type III restriction enzyme, res subunit Sigma54_activat PF00158.26 168 pCP017026_00112 - 335 0.026 14.2 0.0 1 1 9.3e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pCP017026_00112 - 335 0.031 13.7 0.0 1 1 0.0001 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein ATP_bind_1 PF03029.17 241 pCP017026_00112 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 pCP017026_00112 - 335 0.045 14.1 0.0 1 1 0.00018 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 pCP017026_00112 - 335 0.045 13.0 0.0 1 1 0.00013 0.077 12.3 0.0 14 49 158 193 146 207 0.84 Zeta toxin PRK PF00485.18 197 pCP017026_00112 - 335 0.057 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP017026_00112 - 335 0.065 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP017026_00112 - 335 0.074 13.4 0.0 1 1 0.00019 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pCP017026_00112 - 335 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pCP017026_00112 - 335 0.1 12.6 0.5 1 1 0.00042 0.25 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 pCP017026_00112 - 335 0.11 12.4 0.1 1 1 0.0004 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP017026_00112 - 335 0.15 11.7 0.0 1 1 0.00041 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP017026_00112 - 335 0.15 11.8 0.0 1 1 0.00042 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pCP017026_00112 - 335 0.44 11.0 4.2 1 2 2.5 1.5e+03 -0.5 0.1 68 130 84 150 40 162 0.62 AAA domain AAA_23 PF13476.6 200 pCP017026_00112 - 335 0.44 11.0 4.2 2 2 0.00057 0.33 11.4 1.4 22 37 163 178 151 184 0.88 AAA domain TrbI PF03743.14 187 pCP017026_00113 - 393 7.4e-48 162.9 0.1 1 2 0.6 5.4e+03 -3.0 0.4 123 155 136 168 119 173 0.53 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pCP017026_00113 - 393 7.4e-48 162.9 0.1 2 2 8.2e-52 7.4e-48 162.9 0.1 1 187 196 377 196 377 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP017026_00113 - 393 0.044 12.9 0.1 1 1 7.7e-06 0.069 12.2 0.1 29 81 322 374 303 379 0.85 HaeIII restriction endonuclease CagX PF03524.15 211 pCP017026_00114 - 297 4.5e-56 189.9 2.1 1 1 7.9e-60 7.1e-56 189.3 2.1 2 211 32 272 31 272 0.92 Conjugal transfer protein TraE PF05309.11 182 pCP017026_00114 - 297 0.021 14.2 0.1 1 1 4.4e-06 0.04 13.3 0.1 107 171 90 155 87 162 0.83 TraE protein VirB8 PF04335.13 214 pCP017026_00115 - 219 1.6e-52 178.4 0.4 1 1 2e-56 1.8e-52 178.3 0.4 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pCP017026_00115 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 pCP017026_00116 - 54 0.034 13.1 1.0 1 1 5.2e-06 0.031 13.2 1.0 3 25 3 24 1 53 0.80 Treponema clustered lipoprotein (Trep_dent_lipo) La_HTH_kDCL PF18177.1 90 pCP017026_00116 - 54 0.19 12.0 0.0 1 1 3.6e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain PsbT PF01405.17 29 pCP017026_00116 - 54 1.1 9.1 5.2 1 1 0.00027 1.6 8.6 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 pCP017026_00117 - 331 2.1e-30 106.1 33.3 1 2 3.5e-34 2.1e-30 106.1 33.3 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP017026_00117 - 331 2.1e-30 106.1 33.3 2 2 0.75 4.5e+03 -2.8 0.1 84 84 289 289 259 327 0.50 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP017026_00117 - 331 0.065 13.0 0.9 1 2 0.4 2.4e+03 -1.6 0.1 39 51 70 82 61 114 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP017026_00117 - 331 0.065 13.0 0.9 2 2 3.6e-05 0.22 11.4 0.1 37 81 243 287 222 299 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 pCP017026_00117 - 331 0.17 11.9 0.0 1 1 5.1e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) T4SS PF07996.11 197 pCP017026_00118 - 329 1.8e-28 100.3 13.3 1 1 5.5e-32 2.5e-28 99.9 13.3 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP017026_00118 - 329 0.0035 17.5 0.5 1 2 0.27 1.2e+03 -0.3 0.0 30 54 134 158 120 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP017026_00118 - 329 0.0035 17.5 0.5 2 2 4.7e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 pCP017026_00118 - 329 0.017 15.7 0.9 1 2 1.3 6e+03 -2.1 0.0 55 70 124 139 101 163 0.57 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP017026_00118 - 329 0.017 15.7 0.9 2 2 8.1e-06 0.036 14.7 0.2 31 84 208 270 197 307 0.84 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 pCP017026_00118 - 329 0.5 11.1 11.4 1 2 0.042 1.9e+02 2.7 0.8 49 135 108 145 95 182 0.47 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP017026_00118 - 329 0.5 11.1 11.4 2 2 9.1e-05 0.41 11.3 4.5 49 116 225 306 205 328 0.68 Apoptosis antagonizing transcription factor IF2_N PF04760.15 54 pCP017026_00119 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP017026_00119 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP017026_00119 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP017026_00119 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP017026_00119 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP017026_00119 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP017026_00119 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 pCP017026_00120 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family PBECR2 PF18810.1 119 pCP017026_00121 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 Phage_pRha PF09669.10 88 pCP017026_00122 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 pCP017026_00122 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 pCP017026_00122 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) CagE_TrbE_VirB PF03135.14 206 pCP017026_00123 - 922 6.9e-51 173.3 0.4 1 1 1.8e-54 1.6e-50 172.1 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP017026_00123 - 922 3.6e-21 75.2 0.8 1 1 6.9e-25 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein TrbC PF04956.13 99 pCP017026_00124 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP017026_00124 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pCP017026_00126 - 135 0.00056 20.0 0.0 1 1 8.6e-08 0.0015 18.6 0.0 5 53 8 71 5 106 0.81 CRISPR associated protein Cas2 Resolvase PF00239.21 146 pCP017026_00127 - 204 1.4e-33 116.0 0.8 1 1 3.3e-37 2e-33 115.6 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_Mga PF08280.11 60 pCP017026_00127 - 204 0.03 14.4 4.9 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP017026_00127 - 204 0.03 14.4 4.9 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP017026_00127 - 204 0.03 14.4 4.9 3 3 0.0097 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain HTH_38 PF13936.6 44 pCP017026_00127 - 204 0.042 13.6 0.8 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP017026_00127 - 204 0.042 13.6 0.8 2 3 0.00081 4.9 7.0 0.1 2 34 117 150 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP017026_00127 - 204 0.042 13.6 0.8 3 3 0.0074 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain RepL PF05732.11 165 pCP017026_00128 - 107 5.2e-17 61.8 0.0 1 1 3.7e-20 6e-17 61.6 0.0 40 135 2 100 1 105 0.89 Firmicute plasmid replication protein (RepL) HTH_5 PF01022.20 47 pCP017026_00128 - 107 6.3e-05 22.8 0.0 1 1 6.3e-08 0.0001 22.1 0.0 17 47 42 72 41 72 0.94 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 68 pCP017026_00128 - 107 0.00012 22.0 0.0 1 1 9.4e-08 0.00015 21.6 0.0 19 56 38 76 25 83 0.76 Crp-like helix-turn-helix domain DUF4423 PF14394.6 168 pCP017026_00128 - 107 0.00096 18.9 0.0 1 1 7e-07 0.0011 18.7 0.0 37 84 41 86 32 104 0.85 Domain of unknown function (DUF4423) HTH_11 PF08279.12 55 pCP017026_00128 - 107 0.0036 17.2 0.0 1 1 3.3e-06 0.0053 16.7 0.0 17 50 42 74 27 78 0.86 HTH domain MarR PF01047.22 59 pCP017026_00128 - 107 0.0037 17.2 0.0 1 1 3.3e-06 0.0054 16.6 0.0 19 52 42 75 32 76 0.90 MarR family MarR_2 PF12802.7 62 pCP017026_00128 - 107 0.0046 16.8 0.0 1 1 3.7e-06 0.0061 16.4 0.0 23 56 42 75 22 76 0.80 MarR family HTH_20 PF12840.7 61 pCP017026_00128 - 107 0.0048 16.9 0.0 1 1 4.2e-06 0.0068 16.4 0.0 26 59 42 75 41 77 0.93 Helix-turn-helix domain Rrf2 PF02082.20 83 pCP017026_00128 - 107 0.023 15.0 0.0 1 1 2.1e-05 0.035 14.5 0.0 8 59 22 74 17 83 0.80 Transcriptional regulator TrmB PF01978.19 68 pCP017026_00128 - 107 0.028 14.3 0.0 1 1 2.5e-05 0.04 13.8 0.0 23 58 41 76 40 87 0.90 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.10 121 pCP017026_00128 - 107 0.038 13.9 0.1 1 1 2.4e-05 0.038 13.9 0.1 52 108 39 95 2 106 0.83 N-terminal phage replisome organiser (Phage_rep_org_N) CRISPR_Cas2 PF09827.9 76 pCP017026_00129 - 95 1.6e-11 44.2 0.1 1 1 2.3e-15 2e-11 43.9 0.1 2 73 1 86 1 88 0.80 CRISPR associated protein Cas2 Citrate_ly_lig PF08218.11 182 pCP017026_00129 - 95 0.093 12.4 0.0 1 1 1.2e-05 0.11 12.2 0.0 83 153 15 88 10 94 0.82 Citrate lyase ligase C-terminal domain TIR_2 PF13676.6 118 pCP017026_00130 - 408 2.1e-05 25.1 0.1 1 1 1.4e-08 8.4e-05 23.2 0.1 1 83 269 354 269 385 0.79 TIR domain DUF1863 PF08937.11 130 pCP017026_00130 - 408 0.012 16.0 1.2 1 3 0.16 9.6e+02 0.1 3.0 16 71 90 143 62 146 0.73 MTH538 TIR-like domain (DUF1863) DUF1863 PF08937.11 130 pCP017026_00130 - 408 0.012 16.0 1.2 2 3 0.74 4.4e+03 -2.1 0.1 6 38 209 232 207 265 0.49 MTH538 TIR-like domain (DUF1863) DUF1863 PF08937.11 130 pCP017026_00130 - 408 0.012 16.0 1.2 3 3 2e-06 0.012 16.0 1.2 1 103 267 358 267 363 0.69 MTH538 TIR-like domain (DUF1863) T_Ag_DNA_bind PF02217.16 94 pCP017026_00130 - 408 2.7 8.6 7.4 1 2 2.9 1.7e+04 -3.6 0.3 32 48 88 105 84 120 0.48 Origin of replication binding protein T_Ag_DNA_bind PF02217.16 94 pCP017026_00130 - 408 2.7 8.6 7.4 2 2 3.2e-05 0.19 12.3 1.8 13 83 176 245 168 247 0.92 Origin of replication binding protein DUF1899 PF08953.11 66 pCP017026_00131 - 138 0.095 12.6 0.1 1 2 0.43 3.8e+03 -2.2 0.0 38 47 46 55 39 56 0.77 Domain of unknown function (DUF1899) DUF1899 PF08953.11 66 pCP017026_00131 - 138 0.095 12.6 0.1 2 2 3e-05 0.27 11.1 0.0 21 42 77 98 71 100 0.92 Domain of unknown function (DUF1899) XhlA PF10779.9 67 pCP017026_00131 - 138 0.12 12.6 1.7 1 1 2.7e-05 0.25 11.6 1.7 22 61 2 45 1 47 0.87 Haemolysin XhlA AAA_25 PF13481.6 194 pCP017026_00132 - 599 5.2e-16 58.8 0.0 1 1 4.4e-19 1.1e-15 57.7 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP017026_00132 - 599 0.00056 19.3 0.0 1 1 1.7e-06 0.0044 16.4 0.0 16 111 30 130 25 180 0.85 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP017026_00132 - 599 0.0015 18.3 0.0 1 2 9.4e-06 0.024 14.4 0.0 46 85 32 71 21 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP017026_00132 - 599 0.0015 18.3 0.0 2 2 0.15 3.9e+02 0.7 0.0 96 118 108 130 98 168 0.75 IstB-like ATP binding protein AAA_24 PF13479.6 197 pCP017026_00132 - 599 0.0044 16.8 0.0 1 1 3.7e-06 0.0095 15.7 0.0 5 91 36 144 32 206 0.72 AAA domain ATPase PF06745.13 231 pCP017026_00132 - 599 0.0061 15.9 0.1 1 2 1.8e-05 0.046 13.1 0.0 16 71 30 84 23 214 0.76 KaiC ATPase PF06745.13 231 pCP017026_00132 - 599 0.0061 15.9 0.1 2 2 0.65 1.7e+03 -1.9 0.0 137 160 329 352 322 358 0.84 KaiC AAA PF00004.29 132 pCP017026_00132 - 599 0.092 13.2 0.2 1 2 0.00054 1.4 9.4 0.0 2 105 37 166 36 177 0.57 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP017026_00132 - 599 0.092 13.2 0.2 2 2 0.35 9e+02 0.3 0.0 57 74 417 436 383 457 0.76 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pCP017026_00132 - 599 0.2 11.7 1.5 1 1 0.00027 0.69 10.0 1.4 1 29 35 63 35 535 0.93 CobQ/CobB/MinD/ParA nucleotide binding domain HicA_toxin PF07927.12 58 pCP017026_00133 - 67 6.1e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pCP017026_00134 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system TRADD_N PF09034.10 112 pCP017026_00135 - 217 0.033 14.2 0.0 1 1 6.1e-06 0.055 13.5 0.0 21 91 58 127 49 135 0.86 TRADD, N-terminal domain Peptidase_M4_C PF02868.15 168 pCP017026_00135 - 217 0.18 11.7 1.3 1 3 4.2e-05 0.37 10.6 0.1 104 150 13 59 5 63 0.90 Thermolysin metallopeptidase, alpha-helical domain Peptidase_M4_C PF02868.15 168 pCP017026_00135 - 217 0.18 11.7 1.3 2 3 0.6 5.3e+03 -2.9 0.0 123 137 88 102 80 114 0.76 Thermolysin metallopeptidase, alpha-helical domain Peptidase_M4_C PF02868.15 168 pCP017026_00135 - 217 0.18 11.7 1.3 3 3 0.33 2.9e+03 -2.0 0.1 103 126 107 130 92 145 0.64 Thermolysin metallopeptidase, alpha-helical domain AAA_31 PF13614.6 177 pCP017026_00136 - 186 6.3e-05 23.0 0.6 1 2 2.1e-07 0.0013 18.7 0.1 3 26 2 25 1 37 0.90 AAA domain AAA_31 PF13614.6 177 pCP017026_00136 - 186 6.3e-05 23.0 0.6 2 2 0.015 90 2.9 0.0 116 157 52 93 23 106 0.69 AAA domain CbiA PF01656.23 128 pCP017026_00136 - 186 0.0021 18.1 0.8 1 1 2.8e-06 0.017 15.2 0.8 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP017026_00136 - 186 0.02 14.4 0.0 1 1 4.5e-06 0.027 13.9 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase RHH_7 PF16777.5 74 pCP017026_00137 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG NYN PF01936.18 147 pCP017026_00139 - 180 1.1e-09 39.0 0.0 1 1 2e-13 1.2e-09 38.8 0.0 60 123 74 146 15 161 0.80 NYN domain Peroxin-22 PF12827.7 113 pCP017026_00139 - 180 0.004 17.0 0.6 1 1 1.3e-06 0.0079 16.1 0.6 25 105 81 162 46 169 0.76 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 pCP017026_00139 - 180 0.029 15.0 0.0 1 1 8.3e-06 0.049 14.2 0.0 61 103 100 142 77 142 0.87 PIN domain DUF2400 PF09674.10 227 pCP017026_00140 - 217 0.26 11.2 4.0 1 2 0.0095 1.7e+02 2.0 0.1 38 75 49 86 42 96 0.78 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pCP017026_00140 - 217 0.26 11.2 4.0 2 2 3.1e-05 0.56 10.2 0.8 25 110 96 181 92 209 0.74 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pCP017026_00141 - 406 3.2e-08 33.8 0.0 1 1 1.7e-11 6.2e-08 32.9 0.0 3 93 270 374 268 376 0.87 Toprim domain Toprim_4 PF13662.6 89 pCP017026_00141 - 406 0.12 12.9 0.1 1 1 7.1e-05 0.25 11.8 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pCP017026_00141 - 406 0.12 13.0 3.6 1 2 0.037 1.3e+02 3.2 0.4 52 85 140 172 121 201 0.70 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP017026_00141 - 406 0.12 13.0 3.6 2 2 0.00034 1.2 9.8 0.2 15 80 321 382 319 402 0.70 5'-3' exonuclease, C-terminal SAM fold Paz_1 PF18349.1 93 pCP017026_00141 - 406 0.12 12.3 0.9 1 2 9.2e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Paz_1 PF18349.1 93 pCP017026_00141 - 406 0.12 12.3 0.9 2 2 2.7 9.6e+03 -3.4 0.0 36 42 237 243 223 260 0.57 PAZ domain TSC21 PF15217.6 180 pCP017026_00141 - 406 0.17 11.8 0.2 1 1 8.2e-05 0.29 11.0 0.2 38 86 145 193 129 208 0.83 TSC21 family CitMHS PF03600.16 300 pCP017026_00147 - 208 0.014 14.6 0.6 1 1 4.4e-06 0.016 14.4 0.6 147 214 4 101 1 114 0.80 Citrate transporter Yip1 PF04893.17 172 pCP017026_00147 - 208 0.27 10.9 6.3 1 1 0.00011 0.4 10.4 6.3 65 120 7 68 2 75 0.84 Yip1 domain Spo7 PF03907.13 221 pCP017026_00147 - 208 0.46 9.9 7.7 1 1 0.00021 0.75 9.2 7.7 33 93 16 71 12 178 0.72 Spo7-like protein DUF3810 PF12725.7 310 pCP017026_00147 - 208 0.68 9.2 12.4 1 1 0.00023 0.82 8.9 12.4 19 86 8 75 1 177 0.60 Protein of unknown function (DUF3810) DHHC PF01529.20 134 pCP017026_00147 - 208 8.2 6.5 12.2 1 1 0.0043 15 5.7 12.2 47 112 7 69 3 96 0.69 DHHC palmitoyltransferase CitMHS PF03600.16 300 pCP017026_00149 - 208 0.014 14.6 0.6 1 1 4.4e-06 0.016 14.4 0.6 147 214 4 101 1 114 0.80 Citrate transporter Yip1 PF04893.17 172 pCP017026_00149 - 208 0.27 10.9 6.3 1 1 0.00011 0.4 10.4 6.3 65 120 7 68 2 75 0.84 Yip1 domain Spo7 PF03907.13 221 pCP017026_00149 - 208 0.46 9.9 7.7 1 1 0.00021 0.75 9.2 7.7 33 93 16 71 12 178 0.72 Spo7-like protein DUF3810 PF12725.7 310 pCP017026_00149 - 208 0.68 9.2 12.4 1 1 0.00023 0.82 8.9 12.4 19 86 8 75 1 177 0.60 Protein of unknown function (DUF3810) DHHC PF01529.20 134 pCP017026_00149 - 208 8.2 6.5 12.2 1 1 0.0043 15 5.7 12.2 47 112 7 69 3 96 0.69 DHHC palmitoyltransferase DUF3344 PF11824.8 279 pCP017026_00151 - 227 0.087 12.4 0.5 1 1 7.3e-06 0.13 11.8 0.5 117 171 136 194 128 218 0.86 Protein of unknown function (DUF3344) DUF5013 PF16405.5 148 pCP017026_00153 - 506 0.0095 16.2 0.0 1 2 8.9e-06 0.08 13.2 0.0 70 105 222 258 198 277 0.87 Domain of unknown function (DUF5013) DUF5013 PF16405.5 148 pCP017026_00153 - 506 0.0095 16.2 0.0 2 2 0.18 1.6e+03 -0.7 0.0 18 42 408 435 395 473 0.74 Domain of unknown function (DUF5013) AMPK1_CBM PF16561.5 85 pCP017026_00153 - 506 0.088 13.0 0.0 1 1 4.5e-05 0.41 10.9 0.0 21 56 201 237 199 248 0.81 Glycogen recognition site of AMP-activated protein kinase Ribophorin_II PF05817.14 631 pCP017026_00154 - 165 1.4 7.4 7.7 1 1 0.00011 2 6.9 7.7 544 593 18 70 16 77 0.85 Oligosaccharyltransferase subunit Ribophorin II SseC PF04888.12 317 pCP017026_00157 - 1311 0.004 16.8 0.2 1 1 3e-06 0.014 15.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family ThrE PF06738.12 241 pCP017026_00157 - 1311 0.014 14.8 0.8 1 1 7.9e-06 0.036 13.4 0.8 90 179 209 300 201 311 0.78 Putative threonine/serine exporter Hormone_2 PF00123.20 28 pCP017026_00157 - 1311 0.036 14.0 0.1 1 1 3.5e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone APOBEC_C PF05240.14 78 pCP017026_00157 - 1311 0.062 13.3 0.4 1 1 6.9e-05 0.31 11.0 0.4 26 76 766 819 755 821 0.85 APOBEC-like C-terminal domain Ank_3 PF13606.6 31 pCP017026_00159 - 312 3.6e-09 36.1 0.2 1 4 0.015 55 4.8 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 pCP017026_00159 - 312 3.6e-09 36.1 0.2 2 4 0.026 92 4.1 0.0 10 29 142 160 134 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pCP017026_00159 - 312 3.6e-09 36.1 0.2 3 4 3.6e-06 0.013 16.0 0.0 2 30 168 195 167 196 0.94 Ankyrin repeat Ank_3 PF13606.6 31 pCP017026_00159 - 312 3.6e-09 36.1 0.2 4 4 0.01 37 5.3 0.0 4 30 208 234 205 235 0.86 Ankyrin repeat Ank_2 PF12796.7 83 pCP017026_00159 - 312 4.6e-08 33.5 0.0 1 2 0.54 1.9e+03 -0.5 0.0 4 18 74 92 70 122 0.55 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pCP017026_00159 - 312 4.6e-08 33.5 0.0 2 2 8.4e-11 3e-07 30.9 0.0 5 80 142 234 138 237 0.78 Ankyrin repeats (3 copies) Ank PF00023.30 32 pCP017026_00159 - 312 0.00033 21.0 0.0 1 3 0.016 57 4.4 0.0 10 26 142 159 130 165 0.79 Ankyrin repeat Ank PF00023.30 32 pCP017026_00159 - 312 0.00033 21.0 0.0 2 3 0.0043 15 6.2 0.0 3 31 169 198 168 199 0.85 Ankyrin repeat Ank PF00023.30 32 pCP017026_00159 - 312 0.00033 21.0 0.0 3 3 0.0054 19 5.9 0.0 15 28 220 234 206 237 0.70 Ankyrin repeat Ank_5 PF13857.6 56 pCP017026_00159 - 312 0.0019 18.5 0.3 1 4 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP017026_00159 - 312 0.0019 18.5 0.3 2 4 0.00043 1.5 9.2 0.0 23 54 141 173 139 174 0.92 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP017026_00159 - 312 0.0019 18.5 0.3 3 4 8.5e-06 0.03 14.6 0.0 1 48 153 200 153 202 0.93 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP017026_00159 - 312 0.0019 18.5 0.3 4 4 2.5 9.1e+03 -2.8 0.0 34 53 225 242 221 243 0.56 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP017026_00159 - 312 0.0027 18.3 0.1 1 3 0.83 3e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP017026_00159 - 312 0.0027 18.3 0.1 2 3 4.6e-05 0.17 12.5 0.0 13 55 146 188 133 188 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP017026_00159 - 312 0.0027 18.3 0.1 3 3 0.11 3.9e+02 1.8 0.0 4 28 209 234 207 243 0.79 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 pCP017026_00160 - 567 1.6e-07 31.5 0.0 1 2 3 1.8e+04 -5.2 5.9 25 58 343 376 306 392 0.55 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pCP017026_00160 - 567 1.6e-07 31.5 0.0 2 2 2.7e-11 1.6e-07 31.5 0.0 13 84 416 489 397 491 0.81 Restriction endonuclease fold toxin 7 DUF2239 PF09998.9 184 pCP017026_00160 - 567 8.1 6.2 10.9 1 2 0.00026 1.6 8.5 0.6 23 71 46 92 38 103 0.74 Uncharacterized protein conserved in bacteria (DUF2239) DUF2239 PF09998.9 184 pCP017026_00160 - 567 8.1 6.2 10.9 2 2 0.066 3.9e+02 0.7 4.1 4 67 259 324 257 429 0.82 Uncharacterized protein conserved in bacteria (DUF2239) DUF4637 PF15470.6 166 pCP017026_00160 - 567 9.9 5.9 8.5 1 2 0.35 2.1e+03 -1.7 1.7 34 49 78 93 49 130 0.55 Domain of unknown function (DUF4637) DUF4637 PF15470.6 166 pCP017026_00160 - 567 9.9 5.9 8.5 2 2 8.1e-05 0.49 10.1 0.7 17 88 357 428 342 436 0.77 Domain of unknown function (DUF4637) Ank_3 PF13606.6 31 pCP017026_00161 - 312 3.6e-09 36.1 0.2 1 4 0.015 55 4.8 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 pCP017026_00161 - 312 3.6e-09 36.1 0.2 2 4 0.026 92 4.1 0.0 10 29 142 160 134 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pCP017026_00161 - 312 3.6e-09 36.1 0.2 3 4 3.6e-06 0.013 16.0 0.0 2 30 168 195 167 196 0.94 Ankyrin repeat Ank_3 PF13606.6 31 pCP017026_00161 - 312 3.6e-09 36.1 0.2 4 4 0.01 37 5.3 0.0 4 30 208 234 205 235 0.86 Ankyrin repeat Ank_2 PF12796.7 83 pCP017026_00161 - 312 4.6e-08 33.5 0.0 1 2 0.54 1.9e+03 -0.5 0.0 4 18 74 92 70 122 0.55 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pCP017026_00161 - 312 4.6e-08 33.5 0.0 2 2 8.4e-11 3e-07 30.9 0.0 5 80 142 234 138 237 0.78 Ankyrin repeats (3 copies) Ank PF00023.30 32 pCP017026_00161 - 312 0.00033 21.0 0.0 1 3 0.016 57 4.4 0.0 10 26 142 159 130 165 0.79 Ankyrin repeat Ank PF00023.30 32 pCP017026_00161 - 312 0.00033 21.0 0.0 2 3 0.0043 15 6.2 0.0 3 31 169 198 168 199 0.85 Ankyrin repeat Ank PF00023.30 32 pCP017026_00161 - 312 0.00033 21.0 0.0 3 3 0.0054 19 5.9 0.0 15 28 220 234 206 237 0.70 Ankyrin repeat Ank_5 PF13857.6 56 pCP017026_00161 - 312 0.0019 18.5 0.3 1 4 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP017026_00161 - 312 0.0019 18.5 0.3 2 4 0.00043 1.5 9.2 0.0 23 54 141 173 139 174 0.92 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP017026_00161 - 312 0.0019 18.5 0.3 3 4 8.5e-06 0.03 14.6 0.0 1 48 153 200 153 202 0.93 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP017026_00161 - 312 0.0019 18.5 0.3 4 4 2.5 9.1e+03 -2.8 0.0 34 53 225 242 221 243 0.56 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP017026_00161 - 312 0.0027 18.3 0.1 1 3 0.83 3e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP017026_00161 - 312 0.0027 18.3 0.1 2 3 4.6e-05 0.17 12.5 0.0 13 55 146 188 133 188 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP017026_00161 - 312 0.0027 18.3 0.1 3 3 0.11 3.9e+02 1.8 0.0 4 28 209 234 207 243 0.79 Ankyrin repeats (many copies) Ntox24 PF15529.6 97 pCP017026_00164 - 318 0.0021 18.3 0.8 1 2 0.39 7e+03 -2.6 0.0 26 45 180 201 159 205 0.54 Bacterial toxin 24 Ntox24 PF15529.6 97 pCP017026_00164 - 318 0.0021 18.3 0.8 2 2 2.2e-07 0.0039 17.5 0.1 5 93 228 301 210 305 0.79 Bacterial toxin 24 CobN-Mg_chel PF02514.16 1089 pCP017026_00165 - 128 0.16 9.7 0.0 1 1 1e-05 0.19 9.5 0.0 299 369 36 100 24 109 0.71 CobN/Magnesium Chelatase LPD7 PF18821.1 94 pCP017026_00166 - 184 0.0092 16.1 0.4 1 2 0.0018 11 6.2 0.1 19 80 45 110 19 121 0.60 Large polyvalent protein-associated domain 7 LPD7 PF18821.1 94 pCP017026_00166 - 184 0.0092 16.1 0.4 2 2 0.00051 3 8.0 0.1 35 65 124 157 114 161 0.78 Large polyvalent protein-associated domain 7 Imm59 PF15597.6 100 pCP017026_00166 - 184 0.13 12.8 10.6 1 3 2.1e-05 0.13 12.8 3.6 28 74 25 73 20 95 0.85 Immunity protein 59 Imm59 PF15597.6 100 pCP017026_00166 - 184 0.13 12.8 10.6 2 3 0.039 2.3e+02 2.3 2.1 10 47 68 108 63 142 0.61 Immunity protein 59 Imm59 PF15597.6 100 pCP017026_00166 - 184 0.13 12.8 10.6 3 3 0.039 2.3e+02 2.3 1.0 39 62 124 149 88 183 0.63 Immunity protein 59 ABC2_membrane_3 PF12698.7 345 pCP017026_00166 - 184 0.29 10.2 0.8 1 1 5.3e-05 0.32 10.1 0.8 47 122 43 118 23 175 0.68 ABC-2 family transporter protein AHH PF14412.6 114 pCP017026_00167 - 258 6.2e-16 58.5 1.7 1 1 6.7e-20 1.2e-15 57.6 1.7 9 111 154 239 149 243 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH DUF4299 PF14132.6 301 pCP017026_00169 - 116 3.2e-08 33.4 0.1 1 1 6.2e-12 3.7e-08 33.2 0.1 189 300 12 110 5 111 0.85 Domain of unknown function (DUF4299) A2M PF00207.22 92 pCP017026_00169 - 116 0.11 12.3 0.0 1 1 2.6e-05 0.16 11.9 0.0 17 56 49 89 36 94 0.81 Alpha-2-macroglobulin family XPG_I PF00867.18 94 pCP017026_00169 - 116 0.13 12.7 0.0 1 1 2.6e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region Phage_GPD PF05954.11 304 pCP017026_00171 - 838 5.5e-18 65.3 0.0 1 1 9.6e-22 8.6e-18 64.6 0.0 21 281 72 360 45 376 0.76 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 pCP017026_00171 - 838 0.11 12.1 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 pCP017026_00171 - 838 0.11 12.1 0.0 2 2 0.00042 3.8 7.2 0.0 19 49 461 491 452 518 0.81 TCL1/MTCP1 family DivIC PF04977.15 80 pCP017026_00173 - 635 0.0014 18.3 0.2 1 5 8e-08 0.0014 18.3 0.2 23 78 35 90 31 92 0.94 Septum formation initiator DivIC PF04977.15 80 pCP017026_00173 - 635 0.0014 18.3 0.2 2 5 0.19 3.3e+03 -2.1 3.7 24 50 259 285 248 295 0.58 Septum formation initiator DivIC PF04977.15 80 pCP017026_00173 - 635 0.0014 18.3 0.2 3 5 0.48 8.6e+03 -3.4 0.3 40 57 376 392 375 393 0.79 Septum formation initiator DivIC PF04977.15 80 pCP017026_00173 - 635 0.0014 18.3 0.2 4 5 0.4 7.1e+03 -3.1 2.3 21 41 439 459 431 484 0.61 Septum formation initiator DivIC PF04977.15 80 pCP017026_00173 - 635 0.0014 18.3 0.2 5 5 0.17 3.1e+03 -2.0 0.1 16 35 614 633 609 635 0.77 Septum formation initiator DZR PF12773.7 49 pCP017026_00174 - 114 0.039 14.0 0.3 1 1 9.1e-06 0.054 13.5 0.3 13 37 5 38 2 43 0.91 Double zinc ribbon DiS_P_DiS PF06750.13 84 pCP017026_00174 - 114 0.04 14.1 0.4 1 1 1.3e-05 0.077 13.1 0.4 29 72 6 49 2 59 0.83 Bacterial Peptidase A24 N-terminal domain zinc_ribbon_4 PF13717.6 36 pCP017026_00174 - 114 0.6 10.1 4.6 1 2 0.054 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP017026_00174 - 114 0.6 10.1 4.6 2 2 0.00011 0.64 10.0 0.4 3 14 30 41 29 45 0.88 zinc-ribbon domain Rapsyn_N PF10579.9 80 pCP017026_00175 - 358 0.12 12.5 1.2 1 2 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 pCP017026_00175 - 358 0.12 12.5 1.2 2 2 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region SprT-like PF10263.9 113 pCP017026_00177 - 424 0.056 13.3 0.1 1 1 1.5e-05 0.13 12.1 0.1 58 93 316 353 294 360 0.81 SprT-like family Peptidase_M78 PF06114.13 123 pCP017026_00177 - 424 0.077 12.9 0.1 1 1 2e-05 0.18 11.8 0.1 6 63 288 347 285 365 0.76 IrrE N-terminal-like domain Phage_integrase PF00589.22 172 pCP017026_00180 - 312 5.1e-24 85.0 0.5 1 1 2.8e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 pCP017026_00180 - 312 2.3e-05 24.6 3.9 1 3 1.4e-07 0.00043 20.5 1.9 1 79 16 99 16 99 0.88 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pCP017026_00180 - 312 2.3e-05 24.6 3.9 2 3 0.0015 4.4 7.7 0.0 13 35 80 102 76 109 0.89 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pCP017026_00180 - 312 2.3e-05 24.6 3.9 3 3 3.1 9.3e+03 -3.0 0.0 36 54 123 141 114 151 0.54 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP017026_00180 - 312 0.00011 22.4 4.6 1 3 3.8e-08 0.00011 22.4 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP017026_00180 - 312 0.00011 22.4 4.6 2 3 0.91 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP017026_00180 - 312 0.00011 22.4 4.6 3 3 1.8 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phyto-Amp PF15438.6 195 pCP017026_00180 - 312 0.0094 15.8 0.3 1 1 5.8e-06 0.017 14.9 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma YbjN PF10722.9 127 pCP017026_00180 - 312 0.011 15.8 0.3 1 2 0.00017 0.51 10.4 0.1 38 77 96 135 93 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 pCP017026_00180 - 312 0.011 15.8 0.3 2 2 0.04 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator Phage_int_SAM_3 PF14659.6 58 pCP017026_00180 - 312 0.028 14.7 3.2 1 1 3.6e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain FlaC_arch PF05377.11 55 pCP017026_00181 - 76 0.0083 16.5 2.3 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pCP017026_00181 - 76 0.0083 16.5 2.3 2 2 4.6e-07 0.0083 16.5 2.3 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) WGR PF05406.15 80 pCP017026_00182 - 75 2.4e-07 30.7 0.6 1 1 3.1e-11 2.7e-07 30.5 0.6 3 73 4 74 2 75 0.87 WGR domain Cadherin_pro PF08758.11 90 pCP017026_00182 - 75 0.017 15.3 0.0 1 1 2.3e-06 0.021 15.0 0.0 15 45 26 56 12 62 0.81 Cadherin prodomain like YafQ_toxin PF15738.5 88 pCP017026_00186 - 106 1.6e-26 92.4 3.7 1 1 4.7e-30 2.1e-26 92.0 3.7 1 87 20 106 20 106 0.95 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 pCP017026_00186 - 106 1.9e-06 28.4 0.6 1 1 4.9e-10 2.2e-06 28.2 0.6 6 89 23 105 18 106 0.80 ParE toxin of type II toxin-antitoxin system, parDE Ribosomal_S2 PF00318.20 215 pCP017026_00186 - 106 0.0042 16.3 0.9 1 1 1.2e-06 0.0053 16.0 0.9 98 164 27 94 21 99 0.83 Ribosomal protein S2 ParE-like_toxin PF15781.5 87 pCP017026_00186 - 106 0.017 15.1 1.6 1 1 7.8e-06 0.035 14.1 1.6 5 82 26 105 22 106 0.79 ParE-like toxin of type II bacterial toxin-antitoxin system CCDC-167 PF15188.6 84 pCP017026_00191 - 137 0.002 18.4 0.4 1 1 1.1e-06 0.0033 17.7 0.4 37 79 77 119 21 121 0.77 Coiled-coil domain-containing protein 167 DUF3461 PF11944.8 125 pCP017026_00191 - 137 0.015 15.4 3.5 1 1 1.3e-05 0.04 14.0 3.5 23 124 7 100 2 101 0.83 Protein of unknown function (DUF3461) HSBP1 PF06825.12 51 pCP017026_00191 - 137 0.033 14.0 0.1 1 2 0.027 80 3.2 0.0 28 43 61 76 46 78 0.86 Heat shock factor binding protein 1 HSBP1 PF06825.12 51 pCP017026_00191 - 137 0.033 14.0 0.1 2 2 0.00073 2.2 8.2 0.0 17 42 79 104 77 109 0.83 Heat shock factor binding protein 1 Streptin-Immun PF11083.8 93 pCP017026_00191 - 137 0.052 14.0 0.6 1 2 0.35 1.1e+03 0.2 0.1 63 82 40 59 20 68 0.62 Lantibiotic streptin immunity protein Streptin-Immun PF11083.8 93 pCP017026_00191 - 137 0.052 14.0 0.6 2 2 6.7e-05 0.2 12.1 0.1 42 81 68 107 63 115 0.87 Lantibiotic streptin immunity protein DUF4164 PF13747.6 89 pCP017026_00191 - 137 0.1 12.9 0.4 1 1 0.00011 0.32 11.3 0.2 14 42 77 106 62 109 0.77 Domain of unknown function (DUF4164) Trimer_CC PF08954.11 52 pCP017026_00191 - 137 0.14 11.7 0.1 1 2 0.0033 9.8 5.8 0.0 41 52 79 90 52 90 0.70 Trimerisation motif Trimer_CC PF08954.11 52 pCP017026_00191 - 137 0.14 11.7 0.1 2 2 0.19 5.8e+02 0.2 0.0 41 49 90 98 89 100 0.83 Trimerisation motif Sigma_reg_N PF13800.6 90 pCP017026_00192 - 37 0.13 12.6 0.3 1 1 7.1e-06 0.13 12.6 0.3 15 44 5 34 4 37 0.89 Sigma factor regulator N-terminal DUF5601 PF18151.1 65 pCP017026_00193 - 118 0.038 14.3 0.2 1 1 7e-06 0.063 13.6 0.2 14 55 5 47 1 48 0.88 Domain of unknown function (DUF5601) DUF1640 PF07798.11 175 pCP017026_00193 - 118 0.58 10.2 7.1 1 2 1.4e-05 0.12 12.4 2.4 52 100 26 77 9 86 0.83 Protein of unknown function (DUF1640) DUF1640 PF07798.11 175 pCP017026_00193 - 118 0.58 10.2 7.1 2 2 0.068 6.1e+02 0.3 0.3 148 169 82 103 74 110 0.65 Protein of unknown function (DUF1640) HTH_3 PF01381.22 55 pCP017026_00195 - 44 8.4e-07 29.0 0.0 1 1 1e-09 9.1e-07 28.9 0.0 1 33 9 41 9 44 0.95 Helix-turn-helix HTH_26 PF13443.6 63 pCP017026_00195 - 44 0.00022 21.6 0.0 1 1 2.7e-07 0.00024 21.4 0.0 2 34 9 41 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 pCP017026_00195 - 44 0.0007 19.1 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding HTH_19 PF12844.7 65 pCP017026_00195 - 44 0.0012 18.8 0.0 1 1 1.4e-06 0.0013 18.8 0.0 4 37 9 42 7 44 0.91 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 pCP017026_00195 - 44 0.002 18.0 0.1 1 1 2.6e-06 0.0023 17.7 0.1 1 32 9 41 9 43 0.84 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 pCP017026_00195 - 44 0.002 17.9 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 pCP017026_00195 - 44 0.0035 17.4 0.3 1 1 5.7e-06 0.0052 16.8 0.3 25 46 1 22 1 41 0.89 ENT domain HTH_31 PF13560.6 64 pCP017026_00195 - 44 0.0089 16.4 0.0 1 1 1.2e-05 0.011 16.1 0.0 12 38 15 41 9 43 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 pCP017026_00195 - 44 0.009 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 pCP017026_00195 - 44 0.0098 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 pCP017026_00195 - 44 0.013 14.9 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 pCP017026_00195 - 44 0.019 14.9 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 pCP017026_00195 - 44 0.02 14.7 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain HTH_AsnC-type PF13404.6 42 pCP017026_00195 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP017026_00195 - 44 0.03 14.4 0.0 1 1 3.7e-05 0.033 14.3 0.0 3 33 9 38 7 41 0.84 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4 PF04545.16 50 pCP017026_00195 - 44 0.034 13.7 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 HTH_17 PF12728.7 51 pCP017026_00195 - 44 0.081 13.1 0.1 1 2 0.018 16 5.8 0.0 4 16 9 21 9 26 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 pCP017026_00195 - 44 0.081 13.1 0.1 2 2 0.0085 7.6 6.8 0.0 6 26 22 42 19 44 0.78 Helix-turn-helix domain MerR PF00376.23 38 pCP017026_00195 - 44 0.085 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 pCP017026_00195 - 44 0.085 12.7 0.0 2 2 0.01 9.3 6.1 0.0 4 17 22 35 21 41 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 pCP017026_00195 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 pCP017026_00195 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain LysE PF01810.18 193 pCP017230_00001 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP017230_00001 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP017230_00001 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 pCP017230_00001 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 pCP017230_00001 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 pCP017230_00001 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 pCP017230_00001 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 pCP017230_00001 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP017230_00001 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP017230_00001 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP017230_00001 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 pCP017230_00001 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 pCP017230_00002 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP017230_00002 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP017230_00002 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP017230_00002 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP017230_00002 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP017230_00002 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pCP017230_00003 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP017230_00003 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pCP017230_00004 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP017230_00004 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP017230_00004 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP017230_00004 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP017230_00004 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP017230_00004 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pCP017230_00005 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pCP017230_00006 - 1932 3.5e-16 58.9 1.1 1 3 2.1e-19 7.4e-16 57.8 0.1 57 245 1018 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP017230_00006 - 1932 3.5e-16 58.9 1.1 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP017230_00006 - 1932 3.5e-16 58.9 1.1 3 3 1.1 3.9e+03 -3.8 0.0 172 198 1879 1906 1860 1920 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP017230_00006 - 1932 4e-08 33.4 8.0 1 2 1.1e-11 4e-08 33.4 8.0 2 148 1000 1212 999 1243 0.71 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP017230_00006 - 1932 4e-08 33.4 8.0 2 2 0.31 1.1e+03 -0.5 5.3 36 121 1801 1904 1750 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP017230_00006 - 1932 1.2e-06 28.8 0.2 1 2 0.24 8.7e+02 0.3 0.0 45 73 1077 1105 1030 1108 0.80 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP017230_00006 - 1932 1.2e-06 28.8 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP017230_00006 - 1932 5.8e-06 26.2 1.2 1 2 3.6e-07 0.0013 18.5 0.2 2 108 1004 1109 1003 1205 0.58 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP017230_00006 - 1932 5.8e-06 26.2 1.2 2 2 0.11 3.9e+02 0.7 0.0 119 150 1883 1916 1827 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP017230_00006 - 1932 3.7e-05 24.2 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP017230_00006 - 1932 3.7e-05 24.2 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 664 701 655 716 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 pCP017230_00007 - 234 0.0008 19.8 0.1 1 1 4.4e-07 0.002 18.5 0.1 29 75 79 143 7 144 0.70 Acetyltransferase (GNAT) domain DUF2768 PF10966.8 58 pCP017230_00007 - 234 0.011 16.1 0.9 1 1 5.7e-06 0.026 15.0 0.9 23 52 203 232 201 233 0.94 Protein of unknown function (DUF2768) Acetyltransf_1 PF00583.25 117 pCP017230_00007 - 234 0.021 15.1 0.1 1 1 1.1e-05 0.051 13.8 0.1 59 92 66 109 30 142 0.69 Acetyltransferase (GNAT) family GramPos_pilinBB PF16569.5 115 pCP017230_00007 - 234 0.22 12.3 4.3 1 2 3.8e-05 0.17 12.7 1.7 56 111 16 72 2 76 0.74 Gram-positive pilin backbone subunit 2, Cna-B-like domain GramPos_pilinBB PF16569.5 115 pCP017230_00007 - 234 0.22 12.3 4.3 2 2 0.4 1.8e+03 -0.3 0.0 20 62 128 174 112 198 0.60 Gram-positive pilin backbone subunit 2, Cna-B-like domain CooC_C PF15976.5 93 pCP017230_00009 - 444 0.12 12.4 0.4 1 2 6.9e-05 0.62 10.2 0.2 22 76 47 101 38 112 0.84 CS1-pili formation C-terminal CooC_C PF15976.5 93 pCP017230_00009 - 444 0.12 12.4 0.4 2 2 0.22 2e+03 -1.1 0.0 11 34 419 442 416 444 0.81 CS1-pili formation C-terminal EVI2A PF05399.11 232 pCP017230_00009 - 444 2.8 7.5 10.5 1 1 0.00068 6.1 6.4 10.5 19 108 14 101 10 112 0.83 Ectropic viral integration site 2A protein (EVI2A) Peptidase_C39 PF03412.15 133 pCP017230_00011 - 197 9e-18 64.4 0.0 1 1 1.9e-21 1.2e-17 64.0 0.0 2 124 33 162 32 176 0.81 Peptidase C39 family Peptidase_C70 PF12385.8 145 pCP017230_00011 - 197 0.00011 22.2 0.0 1 1 2.6e-08 0.00016 21.7 0.0 11 131 37 147 20 158 0.78 Papain-like cysteine protease AvrRpt2 Peptidase_C39_2 PF13529.6 144 pCP017230_00011 - 197 0.086 13.4 0.0 1 1 2.9e-05 0.18 12.4 0.0 6 143 36 143 31 144 0.67 Peptidase_C39 like family Relaxase PF03432.14 242 pCP017230_00013 - 462 1.6e-10 41.1 7.7 1 2 8.7e-15 1.6e-10 41.1 7.7 48 229 119 297 70 310 0.74 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP017230_00013 - 462 1.6e-10 41.1 7.7 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pCP017230_00014 - 183 4.6e-05 23.3 7.5 1 3 3.3e-05 0.15 12.1 0.3 24 45 17 38 10 44 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP017230_00014 - 183 4.6e-05 23.3 7.5 2 3 0.38 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP017230_00014 - 183 4.6e-05 23.3 7.5 3 3 1e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP017230_00014 - 183 0.032 14.4 2.3 1 1 9.1e-06 0.041 14.0 1.6 54 131 18 103 9 124 0.73 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP017230_00014 - 183 0.1 12.7 5.3 1 2 0.0054 24 5.1 0.7 10 46 55 91 53 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP017230_00014 - 183 0.1 12.7 5.3 2 2 0.00034 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pCP017230_00014 - 183 0.48 10.7 7.2 1 2 0.022 1e+02 3.2 0.6 2 23 9 30 8 69 0.71 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP017230_00014 - 183 0.48 10.7 7.2 2 2 0.00012 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 pCP017230_00015 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pCP017230_00015 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP017230_00015 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pCP017230_00015 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP017230_00015 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 pCP017230_00018 - 409 2.3e-08 34.3 0.2 1 2 1 6.1e+03 -2.3 0.0 55 74 161 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pCP017230_00018 - 409 2.3e-08 34.3 0.2 2 2 1.1e-11 6.4e-08 32.9 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pCP017230_00018 - 409 0.024 14.9 0.1 1 2 0.028 1.6e+02 2.6 0.3 41 60 149 169 121 180 0.81 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pCP017230_00018 - 409 0.024 14.9 0.1 2 2 0.00021 1.2 9.4 0.0 15 83 283 359 277 378 0.81 Retrotransposon gag protein 5_3_exonuc PF01367.20 97 pCP017230_00018 - 409 0.36 11.5 2.6 1 2 0.48 2.9e+03 -1.1 0.1 28 42 166 180 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP017230_00018 - 409 0.36 11.5 2.6 2 2 7.8e-05 0.47 11.1 0.4 15 81 322 384 321 405 0.71 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pCP017230_00019 - 92 0.0072 16.3 0.0 1 1 1.5e-06 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pCP017230_00019 - 92 0.15 12.0 0.0 1 1 4e-05 0.36 10.8 0.0 9 39 22 56 16 59 0.84 STI1 domain DUF1451 PF07295.11 147 pCP017230_00020 - 67 0.00056 20.0 0.0 1 1 3.5e-08 0.00063 19.8 0.0 107 137 9 39 2 44 0.88 Zinc-ribbon containing domain DUF4145 PF13643.6 88 pCP017230_00021 - 207 2.5e-16 59.6 5.0 1 3 0.88 1.6e+04 -3.9 0.0 35 43 76 84 67 86 0.66 Domain of unknown function (DUF4145) DUF4145 PF13643.6 88 pCP017230_00021 - 207 2.5e-16 59.6 5.0 2 3 8.1e-20 1.4e-15 57.1 0.1 1 76 87 161 87 172 0.91 Domain of unknown function (DUF4145) DUF4145 PF13643.6 88 pCP017230_00021 - 207 2.5e-16 59.6 5.0 3 3 0.0019 34 4.7 0.6 21 52 177 203 161 207 0.77 Domain of unknown function (DUF4145) Glyco_hydro_16 PF00722.21 177 pCP017230_00024 - 46 0.081 12.4 0.4 1 1 4.5e-06 0.081 12.4 0.4 108 130 11 33 2 41 0.83 Glycosyl hydrolases family 16 HicB_lk_antitox PF15919.5 123 pCP017230_00025 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pCP017230_00026 - 67 6.2e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pCP017230_00027 - 597 1.8e-15 57.0 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP017230_00027 - 597 0.00087 18.7 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP017230_00027 - 597 0.00087 18.7 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP017230_00027 - 597 0.0012 18.6 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP017230_00027 - 597 0.0012 18.6 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 pCP017230_00027 - 597 0.0035 17.1 0.0 1 1 2.5e-06 0.0073 16.0 0.0 5 122 36 172 32 207 0.72 AAA domain ATPase PF06745.13 231 pCP017230_00027 - 597 0.011 15.1 0.1 1 2 2.1e-05 0.064 12.6 0.0 16 70 30 83 26 214 0.87 KaiC ATPase PF06745.13 231 pCP017230_00027 - 597 0.011 15.1 0.1 2 2 0.51 1.5e+03 -1.7 0.0 137 160 329 352 321 358 0.83 KaiC CbiA PF01656.23 128 pCP017230_00027 - 597 0.18 11.9 0.9 1 1 0.00018 0.53 10.4 1.0 1 29 35 63 35 537 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain GBR_NSP5 PF17580.2 176 pCP017230_00028 - 141 0.012 15.5 0.4 1 1 1.1e-06 0.02 14.7 0.4 17 64 34 81 17 89 0.78 Group B Rotavirus Non-structural protein 5 Resolvase PF00239.21 146 pCP017230_00030 - 204 1.6e-33 115.9 0.7 1 1 4.7e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP017230_00030 - 204 0.024 14.4 0.8 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP017230_00030 - 204 0.024 14.4 0.8 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP017230_00030 - 204 0.024 14.4 0.8 3 3 0.01 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP017230_00030 - 204 0.028 14.5 4.9 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP017230_00030 - 204 0.028 14.5 4.9 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP017230_00030 - 204 0.028 14.5 4.9 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCP017230_00030 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP017230_00030 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP017230_00030 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pCP017230_00031 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP017230_00031 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pCP017230_00031 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pCP017230_00033 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP017230_00033 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pCP017230_00034 - 922 7.4e-52 176.4 0.8 1 1 4.1e-55 1.9e-51 175.1 0.8 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP017230_00034 - 922 3.6e-21 75.2 0.8 1 1 1.4e-24 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 pCP017230_00034 - 922 3.9e-07 29.3 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 pCP017230_00034 - 922 0.033 14.3 5.2 1 5 0.52 2.3e+03 -1.6 0.1 96 202 139 253 129 274 0.53 Helicase HerA, central domain DUF87 PF01935.17 227 pCP017230_00034 - 922 0.033 14.3 5.2 2 5 0.35 1.6e+03 -1.0 0.1 88 126 264 300 242 418 0.70 Helicase HerA, central domain DUF87 PF01935.17 227 pCP017230_00034 - 922 0.033 14.3 5.2 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 pCP017230_00034 - 922 0.033 14.3 5.2 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 pCP017230_00034 - 922 0.033 14.3 5.2 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain Phage_pRha PF09669.10 88 pCP017230_00035 - 185 6.7e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCP017230_00035 - 185 0.0015 18.6 0.0 1 1 8.6e-07 0.0031 17.6 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pCP017230_00035 - 185 0.026 14.1 0.3 1 2 0.05 1.8e+02 1.6 0.1 80 118 33 71 5 80 0.74 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pCP017230_00035 - 185 0.026 14.1 0.3 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pCP017230_00035 - 185 0.081 12.9 0.1 1 1 6.1e-05 0.22 11.5 0.0 77 131 80 130 69 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pCP017230_00035 - 185 0.83 9.7 7.1 1 3 0.019 69 3.6 0.1 40 53 12 25 3 29 0.83 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP017230_00035 - 185 0.83 9.7 7.1 2 3 0.0022 7.9 6.6 0.9 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP017230_00035 - 185 0.83 9.7 7.1 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 DUF3895 PF13034.6 76 pCP017230_00036 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 pCP017230_00036 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) SSB PF00436.25 104 pCP017230_00037 - 141 7e-25 87.1 0.1 1 1 4.9e-29 8.8e-25 86.8 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pCP017230_00038 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP017230_00038 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP017230_00038 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP017230_00038 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP017230_00038 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP017230_00038 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP017230_00038 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pCP017230_00039 - 323 4.7e-28 98.9 14.1 1 1 2.7e-31 6.1e-28 98.6 14.1 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP017230_00039 - 323 0.0059 16.7 0.7 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP017230_00039 - 323 0.0059 16.7 0.7 2 2 9.1e-06 0.02 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP017230_00039 - 323 0.011 16.4 5.4 1 3 0.067 1.5e+02 3.0 0.3 92 135 104 145 41 149 0.59 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP017230_00039 - 323 0.011 16.4 5.4 2 3 0.12 2.6e+02 2.2 0.5 52 135 111 145 93 185 0.58 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP017230_00039 - 323 0.011 16.4 5.4 3 3 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pCP017230_00039 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pCP017230_00039 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pCP017230_00039 - 323 0.069 13.8 0.9 1 2 2.2 4.9e+03 -1.8 0.0 55 72 124 141 101 172 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP017230_00039 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain Allexi_40kDa PF05549.11 271 pCP017230_00039 - 323 0.81 9.1 5.0 1 2 0.21 4.8e+02 0.1 0.1 37 123 47 138 33 177 0.61 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pCP017230_00039 - 323 0.81 9.1 5.0 2 2 0.0002 0.46 10.0 1.6 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein THOC7 PF05615.13 132 pCP017230_00039 - 323 3 8.1 11.6 1 2 0.00072 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pCP017230_00039 - 323 3 8.1 11.6 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 DHR10 PF18595.1 117 pCP017230_00039 - 323 5.7 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pCP017230_00039 - 323 5.7 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain TrbL PF04610.14 215 pCP017230_00040 - 332 2.8e-30 105.7 31.4 1 2 4.7e-34 2.8e-30 105.7 31.4 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP017230_00040 - 332 2.8e-30 105.7 31.4 2 2 0.24 1.4e+03 -1.2 0.1 61 91 293 329 260 332 0.58 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP017230_00040 - 332 0.16 11.8 1.2 1 2 0.16 9.4e+02 -0.3 0.1 35 67 67 105 60 118 0.65 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP017230_00040 - 332 0.16 11.8 1.2 2 2 0.00011 0.68 9.8 0.1 28 81 238 288 209 301 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP017230_00040 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pCP017230_00041 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP017230_00041 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pCP017230_00042 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP017230_00042 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pCP017230_00043 - 295 2e-54 184.5 1.5 1 1 3.7e-58 3.3e-54 183.8 1.5 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP017230_00043 - 295 0.072 12.9 0.5 1 2 1.8e-05 0.16 11.8 0.0 1 51 1 51 1 66 0.92 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP017230_00043 - 295 0.072 12.9 0.5 2 2 1.1 9.7e+03 -3.7 0.1 50 62 130 142 124 149 0.68 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pCP017230_00044 - 391 3.3e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP017230_00044 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pCP017230_00045 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP017230_00045 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP017230_00045 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP017230_00045 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP017230_00045 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP017230_00045 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP017230_00045 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP017230_00045 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP017230_00045 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP017230_00045 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP017230_00045 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP017230_00045 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP017230_00045 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP017230_00045 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP017230_00045 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP017230_00045 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP017230_00045 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP017230_00045 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP017230_00045 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP017230_00045 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP017230_00045 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP017230_00045 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP017230_00045 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP017230_00045 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP017230_00045 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP017230_00045 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP017230_00045 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP017230_00045 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP017230_00045 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP017230_00045 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP017230_00045 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP017230_00045 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pCP017230_00046 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP017230_00046 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP017230_00046 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP017230_00046 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP017230_00046 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pCP017230_00047 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pCP017230_00047 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pCP017230_00047 - 145 0.08 12.7 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP017230_00047 - 145 3.9 7.4 5.6 1 2 0.00081 3.6 7.5 2.3 36 49 29 42 2 47 0.91 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP017230_00047 - 145 3.9 7.4 5.6 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pCP017230_00048 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pCP017230_00049 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCP017230_00049 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP017230_00049 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP017230_00049 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP017230_00049 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP017230_00049 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pCP017230_00051 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP017230_00051 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pCP017230_00052 - 676 1.4e-97 327.4 8.2 1 1 6.3e-101 1.9e-97 326.9 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP017230_00052 - 676 4.7e-12 46.0 3.1 1 2 1.8e-15 5.4e-12 45.8 0.1 2 101 3 132 2 134 0.90 Toprim domain Toprim PF01751.22 103 pCP017230_00052 - 676 4.7e-12 46.0 3.1 2 2 1.3 3.8e+03 -1.8 0.6 77 77 520 520 476 566 0.60 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP017230_00052 - 676 0.05 13.4 2.1 1 1 4.7e-05 0.14 12.0 2.1 2 27 628 656 627 664 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP017230_00052 - 676 0.05 13.9 0.7 1 2 2.9 8.5e+03 -2.9 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP017230_00052 - 676 0.05 13.9 0.7 2 2 2.7e-05 0.079 13.2 0.0 18 35 624 641 614 641 0.76 zinc-ribbon EF-hand_8 PF13833.6 55 pCP017230_00052 - 676 0.083 12.8 0.0 1 1 9.3e-05 0.28 11.1 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 pCP017230_00052 - 676 0.34 11.1 3.3 1 3 0.59 1.8e+03 -0.8 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP017230_00052 - 676 0.34 11.1 3.3 2 3 1.7 5.2e+03 -2.3 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP017230_00052 - 676 0.34 11.1 3.3 3 3 0.00026 0.78 10.0 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain PcfJ PF14284.6 144 pCP017230_00053 - 473 4.7e-05 23.3 2.2 1 1 1.3e-08 0.00012 22.0 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP017230_00053 - 473 0.025 14.5 4.1 1 1 2e-05 0.18 11.7 4.1 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pCP017230_00055 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP017230_00055 - 639 3.4e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP017230_00055 - 639 3.4e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP017230_00055 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP017230_00055 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP017230_00055 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP017230_00055 - 639 0.0015 18.9 0.0 1 1 2e-06 0.0036 17.6 0.0 4 58 266 314 264 318 0.81 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP017230_00055 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP017230_00055 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP017230_00055 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 pCP017230_00055 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B Rrp15p PF07890.12 134 pCP017230_00057 - 65 0.41 11.0 7.3 1 1 0.00014 0.42 10.9 7.3 25 74 14 64 3 65 0.80 Rrp15p Oxysterol_BP PF01237.18 373 pCP017230_00057 - 65 0.82 8.4 6.8 1 1 0.00028 0.84 8.4 6.8 311 349 26 63 5 64 0.82 Oxysterol-binding protein Asp4 PF16996.5 55 pCP017230_00057 - 65 1.1 9.1 4.3 1 2 0.0003 0.9 9.4 2.6 9 30 18 39 13 44 0.91 Accessory secretory protein Sec Asp4 Asp4 PF16996.5 55 pCP017230_00057 - 65 1.1 9.1 4.3 2 2 0.52 1.5e+03 -1.0 0.1 17 25 41 49 37 55 0.66 Accessory secretory protein Sec Asp4 Casc1_N PF15927.5 201 pCP017230_00057 - 65 1.8 8.2 14.1 1 1 0.00072 2.1 8.0 14.1 3 35 20 52 18 62 0.83 Cancer susceptibility candidate 1 N-terminus Herpes_UL56 PF04534.12 197 pCP017230_00057 - 65 2.6 7.5 9.7 1 1 0.0011 3.2 7.2 9.7 63 103 15 58 8 61 0.72 Herpesvirus UL56 protein Radial_spoke_3 PF06098.11 286 pCP017230_00057 - 65 5.5 6.2 13.0 1 1 0.002 6 6.1 13.0 150 204 1 54 1 60 0.81 Radial spoke protein 3 CtsR_C PF17727.1 72 pCP017230_00060 - 102 0.019 15.1 0.2 1 2 0.00017 3 8.0 0.0 3 38 31 66 27 73 0.86 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP017230_00060 - 102 0.019 15.1 0.2 2 2 0.0014 24 5.1 0.0 28 49 74 95 71 101 0.84 CtsR C-terminal dimerization domain AAA_31 PF13614.6 177 pCP017417_00001 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 pCP017417_00001 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pCP017417_00001 - 186 0.0021 18.1 0.9 1 1 2.9e-06 0.017 15.2 0.9 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP017417_00001 - 186 0.014 14.8 0.0 1 1 3.2e-06 0.019 14.4 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase RseC_MucC PF04246.12 130 pCP017417_00002 - 93 9.1 6.3 6.3 1 2 0.085 1.5e+03 -1.0 0.1 78 96 5 22 3 31 0.58 Positive regulator of sigma(E), RseC/MucC RseC_MucC PF04246.12 130 pCP017417_00002 - 93 9.1 6.3 6.3 2 2 0.00014 2.4 8.1 3.1 62 112 32 81 27 91 0.74 Positive regulator of sigma(E), RseC/MucC NnrS PF05940.12 366 pCP017417_00003 - 124 0.023 14.1 9.9 1 1 1.3e-05 0.028 13.8 9.9 75 171 8 110 3 116 0.73 NnrS protein DUF2070 PF09843.9 564 pCP017417_00003 - 124 0.054 11.8 13.4 1 1 2.8e-05 0.063 11.6 13.4 80 176 9 115 3 123 0.72 Predicted membrane protein (DUF2070) DUF4199 PF13858.6 168 pCP017417_00003 - 124 0.15 12.4 19.9 1 2 0.0025 5.6 7.3 8.2 6 59 11 62 7 66 0.60 Protein of unknown function (DUF4199) DUF4199 PF13858.6 168 pCP017417_00003 - 124 0.15 12.4 19.9 2 2 0.00024 0.53 10.7 4.4 9 60 73 120 64 124 0.49 Protein of unknown function (DUF4199) Glucos_trans_II PF14264.6 297 pCP017417_00003 - 124 0.51 9.7 27.0 1 2 0.00022 0.49 9.7 7.9 226 278 5 53 2 59 0.81 Glucosyl transferase GtrII Glucos_trans_II PF14264.6 297 pCP017417_00003 - 124 0.51 9.7 27.0 2 2 0.007 16 4.8 11.0 138 187 67 113 58 123 0.55 Glucosyl transferase GtrII DUF5385 PF17359.2 220 pCP017417_00003 - 124 0.52 9.8 9.3 1 2 0.09 2e+02 1.4 0.6 5 30 35 61 32 67 0.59 Family of unknown function (DUF5385) DUF5385 PF17359.2 220 pCP017417_00003 - 124 0.52 9.8 9.3 2 2 4.4e-05 0.099 12.2 2.6 2 31 91 122 90 124 0.50 Family of unknown function (DUF5385) NVEALA PF14055.6 64 pCP017417_00003 - 124 4.1 7.4 6.4 1 3 1 2.3e+03 -1.4 0.1 15 15 43 43 30 67 0.50 NVEALA protein NVEALA PF14055.6 64 pCP017417_00003 - 124 4.1 7.4 6.4 2 3 0.04 89 3.2 0.5 9 35 72 98 62 99 0.79 NVEALA protein NVEALA PF14055.6 64 pCP017417_00003 - 124 4.1 7.4 6.4 3 3 0.0019 4.2 7.4 0.2 6 29 99 122 95 124 0.86 NVEALA protein TssN PF17555.2 275 pCP017417_00003 - 124 4.7 6.5 20.7 1 1 0.0026 5.9 6.2 20.7 38 142 9 116 2 122 0.71 Type VI secretion system, TssN DUF2663 PF10864.8 127 pCP017417_00003 - 124 6.7 7.1 10.9 1 2 0.1 2.3e+02 2.1 1.5 51 78 30 57 1 64 0.47 Protein of unknown function (DUF2663) DUF2663 PF10864.8 127 pCP017417_00003 - 124 6.7 7.1 10.9 2 2 0.016 36 4.8 8.5 17 83 56 121 27 123 0.75 Protein of unknown function (DUF2663) Lipase_3 PF01764.25 142 pCP017417_00004 - 531 3.6e-08 33.4 0.0 1 1 7.7e-11 1.4e-07 31.5 0.0 49 114 175 241 139 253 0.73 Lipase (class 3) DUF2974 PF11187.8 224 pCP017417_00004 - 531 2.8e-07 30.3 0.0 1 1 3.8e-10 6.7e-07 29.1 0.0 7 123 100 233 95 271 0.73 Protein of unknown function (DUF2974) PGAP1 PF07819.13 231 pCP017417_00004 - 531 2.7e-05 24.0 0.3 1 2 1.9e-07 0.00034 20.4 0.0 48 114 130 213 91 232 0.72 PGAP1-like protein PGAP1 PF07819.13 231 pCP017417_00004 - 531 2.7e-05 24.0 0.3 2 2 0.14 2.5e+02 1.2 0.1 44 83 306 346 271 361 0.77 PGAP1-like protein DUF676 PF05057.14 219 pCP017417_00004 - 531 5.3e-05 22.8 0.0 1 1 7.2e-08 0.00013 21.6 0.0 66 105 177 216 168 234 0.71 Putative serine esterase (DUF676) LIDHydrolase PF10230.9 266 pCP017417_00004 - 531 0.00045 19.9 0.1 1 1 5.2e-07 0.00093 18.8 0.1 66 101 168 206 133 217 0.71 Lipid-droplet associated hydrolase Abhydrolase_6 PF12697.7 220 pCP017417_00004 - 531 0.0017 19.0 0.0 1 1 1.3e-06 0.0024 18.5 0.0 51 87 175 215 140 258 0.74 Alpha/beta hydrolase family UPF0227 PF05728.12 187 pCP017417_00004 - 531 0.0021 18.1 0.9 1 3 5.7 1e+04 -3.8 0.1 123 146 54 77 36 87 0.53 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pCP017417_00004 - 531 0.0021 18.1 0.9 2 3 8e-06 0.014 15.3 0.0 40 80 172 211 144 227 0.70 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pCP017417_00004 - 531 0.0021 18.1 0.9 3 3 0.51 9.2e+02 -0.4 0.0 115 145 411 442 388 459 0.73 Uncharacterised protein family (UPF0227) DUF4450 PF14614.6 217 pCP017417_00004 - 531 0.016 14.8 0.1 1 1 2.7e-05 0.049 13.2 0.1 6 48 466 508 463 515 0.94 Domain of unknown function (DUF4450) DUF1257 PF06868.11 104 pCP017417_00004 - 531 0.24 11.7 2.3 1 3 0.0099 18 5.7 0.1 5 34 33 64 30 81 0.76 Protein of unknown function (DUF1257) DUF1257 PF06868.11 104 pCP017417_00004 - 531 0.24 11.7 2.3 2 3 0.021 38 4.6 0.1 29 69 415 455 401 468 0.84 Protein of unknown function (DUF1257) DUF1257 PF06868.11 104 pCP017417_00004 - 531 0.24 11.7 2.3 3 3 7.7 1.4e+04 -3.6 0.0 67 78 484 495 477 503 0.65 Protein of unknown function (DUF1257) SBDS PF01172.18 88 pCP017417_00004 - 531 0.79 9.8 5.3 1 2 1 1.9e+03 -1.0 0.1 20 41 43 63 27 110 0.69 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS PF01172.18 88 pCP017417_00004 - 531 0.79 9.8 5.3 2 2 0.00046 0.83 9.8 1.4 8 31 427 451 420 506 0.79 Shwachman-Bodian-Diamond syndrome (SBDS) protein SseC PF04888.12 317 pCP017417_00007 - 1305 0.0012 18.5 0.2 1 1 1.1e-06 0.0032 17.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family APOBEC_C PF05240.14 78 pCP017417_00007 - 1305 0.018 15.0 0.5 1 1 3e-05 0.091 12.7 0.5 26 76 766 819 755 821 0.86 APOBEC-like C-terminal domain ThrE PF06738.12 241 pCP017417_00007 - 1305 0.019 14.3 0.8 1 1 1.7e-05 0.051 12.9 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter Hormone_2 PF00123.20 28 pCP017417_00007 - 1305 0.033 14.1 0.1 1 1 5.2e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone PTS_EIIC_2 PF13303.6 328 pCP017417_00007 - 1305 0.037 13.1 1.0 1 1 2.1e-05 0.064 12.3 1.0 21 107 208 297 204 316 0.82 Phosphotransferase system, EIIC TPR_11 PF13414.6 42 pCP017417_00007 - 1305 0.064 12.9 0.3 1 1 5.9e-05 0.18 11.5 0.3 13 33 1193 1213 1192 1214 0.96 TPR repeat Glyco_tranf_2_5 PF13712.6 210 pCP017417_00009 - 267 0.00068 19.4 3.8 1 1 7.1e-08 0.0013 18.5 3.8 4 77 114 190 111 198 0.85 Glycosyltransferase like family TraG_N PF07916.11 467 pCP017417_00010 - 753 3.3e-42 144.9 22.9 1 2 3.7e-46 3.3e-42 144.9 22.9 12 465 2 449 1 455 0.80 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pCP017417_00010 - 753 3.3e-42 144.9 22.9 2 2 0.31 2.7e+03 -3.2 4.3 210 287 611 695 581 735 0.49 TraG-like protein, N-terminal region CHMI PF02962.15 124 pCP017417_00010 - 753 0.017 15.5 0.1 1 3 0.81 7.3e+03 -2.7 0.0 98 120 21 43 5 51 0.68 5-carboxymethyl-2-hydroxymuconate isomerase CHMI PF02962.15 124 pCP017417_00010 - 753 0.017 15.5 0.1 2 3 1.2e-05 0.11 12.9 0.0 47 120 69 144 61 148 0.78 5-carboxymethyl-2-hydroxymuconate isomerase CHMI PF02962.15 124 pCP017417_00010 - 753 0.017 15.5 0.1 3 3 0.67 6e+03 -2.5 0.0 45 97 546 600 538 619 0.62 5-carboxymethyl-2-hydroxymuconate isomerase YafQ_toxin PF15738.5 88 pCP017417_00013 - 93 2.5e-24 85.4 5.0 1 1 6.3e-28 2.8e-24 85.2 5.0 1 88 4 91 4 91 0.93 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 pCP017417_00013 - 93 9.5e-06 26.1 0.3 1 1 2.7e-09 1.2e-05 25.8 0.3 3 89 8 89 6 90 0.79 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 87 pCP017417_00013 - 93 0.00012 22.0 2.5 1 1 3.3e-08 0.00015 21.7 2.5 3 84 8 91 6 93 0.81 ParE-like toxin of type II bacterial toxin-antitoxin system BTHB PF18410.1 72 pCP017417_00013 - 93 0.086 12.7 1.5 1 3 0.04 1.8e+02 2.0 0.1 53 66 11 24 5 30 0.79 Basic tilted helix bundle domain BTHB PF18410.1 72 pCP017417_00013 - 93 0.086 12.7 1.5 2 3 0.16 7.4e+02 0.1 0.0 45 61 31 47 22 48 0.82 Basic tilted helix bundle domain BTHB PF18410.1 72 pCP017417_00013 - 93 0.086 12.7 1.5 3 3 0.0002 0.87 9.4 0.1 34 63 45 74 41 80 0.92 Basic tilted helix bundle domain HicB_lk_antitox PF15919.5 123 pCP017417_00015 - 120 8.6e-09 35.6 0.3 1 2 4.3e-06 0.039 14.1 0.0 1 60 13 75 13 80 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 pCP017417_00015 - 120 8.6e-09 35.6 0.3 2 2 4e-08 0.00036 20.7 0.1 88 123 78 109 73 109 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 pCP017417_00015 - 120 0.16 11.9 0.0 1 1 3.3e-05 0.3 11.0 0.0 3 35 81 113 80 116 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HicA_toxin PF07927.12 58 pCP017417_00016 - 75 1.7e-06 28.0 0.0 1 1 1.4e-10 2.5e-06 27.4 0.0 5 55 24 71 20 72 0.88 HicA toxin of bacterial toxin-antitoxin, Fic PF02661.18 97 pCP017417_00018 - 133 4.4e-05 24.3 0.0 1 1 8.9e-09 8e-05 23.5 0.0 23 97 6 76 2 76 0.72 Fic/DOC family Como_LCP PF02247.16 373 pCP017417_00018 - 133 0.056 12.0 0.1 1 1 7.2e-06 0.065 11.8 0.1 238 302 51 116 35 129 0.88 Large coat protein DHHA1 PF02272.19 138 pCP017417_00019 - 189 0.18 12.2 1.6 1 1 2e-05 0.37 11.2 1.6 15 92 36 117 22 129 0.83 DHHA1 domain DUF3825 PF12873.7 239 pCP017417_00020 - 335 2.2e-28 99.3 0.4 1 1 1.9e-32 3.4e-28 98.7 0.4 1 239 106 330 106 330 0.86 Domain of unknown function (DUF3825) DUF447 PF04289.12 176 pCP017417_00021 - 130 0.029 14.1 0.1 1 1 7.7e-06 0.046 13.5 0.1 42 111 21 87 19 96 0.85 Protein of unknown function (DUF447) WH1 PF00568.23 111 pCP017417_00021 - 130 0.04 13.9 0.3 1 1 1e-05 0.063 13.2 0.3 9 80 28 98 20 106 0.84 WH1 domain Cob_adeno_trans PF01923.18 164 pCP017417_00021 - 130 0.045 13.9 0.1 1 1 9.9e-06 0.059 13.5 0.1 25 104 37 127 32 130 0.79 Cobalamin adenosyltransferase IMS_C PF11799.8 118 pCP017417_00023 - 127 0.00012 22.7 0.0 1 1 2.2e-08 0.00019 22.1 0.0 59 111 11 62 3 67 0.88 impB/mucB/samB family C-terminal domain Patched PF02460.18 811 pCP017417_00023 - 127 0.024 12.8 0.2 1 1 3.1e-06 0.027 12.5 0.2 3 75 52 122 50 126 0.91 Patched family IMS PF00817.20 150 pCP017417_00025 - 220 1.5e-25 89.9 0.2 1 1 2.2e-29 4e-25 88.6 0.2 1 149 10 192 10 193 0.86 impB/mucB/samB family CooC_C PF15976.5 93 pCP017417_00027 - 53 0.015 15.3 0.0 1 1 1.8e-06 0.016 15.2 0.0 12 46 5 39 1 43 0.89 CS1-pili formation C-terminal PemK_toxin PF02452.17 111 pCP017417_00027 - 53 0.04 14.3 0.0 1 1 5.3e-06 0.048 14.1 0.0 81 108 2 29 1 32 0.91 PemK-like, MazF-like toxin of type II toxin-antitoxin system HTH_3 PF01381.22 55 pCP017417_00028 - 44 3.7e-07 30.1 0.0 1 1 4.6e-10 4.1e-07 30.0 0.0 1 36 9 43 9 44 0.94 Helix-turn-helix HTH_26 PF13443.6 63 pCP017417_00028 - 44 0.00017 21.9 0.0 1 1 2.1e-07 0.00019 21.8 0.0 2 35 9 42 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 pCP017417_00028 - 44 0.00074 19.0 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 65 pCP017417_00028 - 44 0.0012 18.7 0.0 1 1 1.4e-06 0.0013 18.6 0.0 1 32 9 41 9 44 0.81 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_19 PF12844.7 65 pCP017417_00028 - 44 0.0012 18.8 0.0 1 1 1.5e-06 0.0013 18.7 0.0 4 37 9 42 7 44 0.90 Helix-turn-helix domain HTH_23 PF13384.6 50 pCP017417_00028 - 44 0.002 17.8 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 pCP017417_00028 - 44 0.0038 17.3 0.3 1 1 6e-06 0.0054 16.8 0.3 25 46 1 22 1 40 0.90 ENT domain HTH_31 PF13560.6 64 pCP017417_00028 - 44 0.0048 17.2 0.0 1 1 5.8e-06 0.0052 17.1 0.0 12 40 15 43 9 44 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 pCP017417_00028 - 44 0.0094 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 pCP017417_00028 - 44 0.0099 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 pCP017417_00028 - 44 0.013 14.8 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 pCP017417_00028 - 44 0.02 14.8 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 pCP017417_00028 - 44 0.021 14.6 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP017417_00028 - 44 0.028 14.5 0.0 1 1 3.5e-05 0.032 14.3 0.0 3 33 9 38 7 42 0.84 Bacteriophage CI repressor helix-turn-helix domain HTH_AsnC-type PF13404.6 42 pCP017417_00028 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 51 pCP017417_00028 - 44 0.031 14.5 0.0 1 2 0.02 18 5.6 0.0 4 16 9 21 9 25 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 pCP017417_00028 - 44 0.031 14.5 0.0 2 2 0.0034 3 8.1 0.0 6 28 22 43 19 44 0.83 Helix-turn-helix domain Sigma70_r4 PF04545.16 50 pCP017417_00028 - 44 0.035 13.6 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 MerR PF00376.23 38 pCP017417_00028 - 44 0.08 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 pCP017417_00028 - 44 0.08 12.7 0.0 2 2 0.0096 8.6 6.2 0.0 4 18 22 36 21 43 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 pCP017417_00028 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 pCP017417_00028 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain DUF5601 PF18151.1 65 pCP017417_00030 - 133 0.0084 16.4 0.4 1 1 1.8e-06 0.016 15.5 0.4 12 55 44 89 29 90 0.86 Domain of unknown function (DUF5601) IFP_35_N PF07334.13 76 pCP017417_00030 - 133 0.14 12.2 4.9 1 3 0.0049 44 4.2 0.0 57 72 5 20 3 23 0.89 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 pCP017417_00030 - 133 0.14 12.2 4.9 2 3 0.15 1.3e+03 -0.5 0.1 1 20 42 61 29 73 0.74 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 pCP017417_00030 - 133 0.14 12.2 4.9 3 3 0.00022 2 8.5 0.4 6 28 97 119 90 126 0.88 Interferon-induced 35 kDa protein (IFP 35) N-terminus HSBP1 PF06825.12 51 pCP017417_00033 - 126 0.025 14.4 0.1 1 1 9.8e-06 0.044 13.6 0.1 14 43 65 94 61 98 0.87 Heat shock factor binding protein 1 CCDC-167 PF15188.6 84 pCP017417_00033 - 126 0.026 14.9 0.3 1 1 8.7e-06 0.039 14.3 0.3 36 79 48 108 20 110 0.72 Coiled-coil domain-containing protein 167 DUF3450 PF11932.8 241 pCP017417_00033 - 126 0.11 11.8 0.2 1 1 2.9e-05 0.13 11.6 0.2 36 105 35 104 19 112 0.82 Protein of unknown function (DUF3450) DUF4164 PF13747.6 89 pCP017417_00033 - 126 0.11 12.8 0.3 1 1 5.3e-05 0.24 11.7 0.1 13 42 65 95 60 98 0.89 Domain of unknown function (DUF4164) Phage_NinH PF06322.11 60 pCP017417_00034 - 47 0.1 12.5 0.2 1 1 7e-06 0.13 12.2 0.2 36 56 26 46 21 47 0.90 Phage NinH protein WGR PF05406.15 80 pCP017417_00038 - 75 4.2e-07 29.9 0.3 1 1 5.5e-11 4.9e-07 29.7 0.3 3 73 4 74 2 75 0.86 WGR domain Cadherin_pro PF08758.11 90 pCP017417_00038 - 75 0.035 14.3 0.0 1 1 4.8e-06 0.043 14.0 0.0 15 44 26 55 12 62 0.80 Cadherin prodomain like FlaC_arch PF05377.11 55 pCP017417_00039 - 76 0.0068 16.8 1.5 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pCP017417_00039 - 76 0.0068 16.8 1.5 2 2 3.8e-07 0.0068 16.8 1.5 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) Phage_integrase PF00589.22 172 pCP017417_00040 - 312 4.9e-24 85.0 0.5 1 1 3.2e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 pCP017417_00040 - 312 1.2e-05 25.5 4.2 1 2 1.5e-08 3.9e-05 23.9 1.8 1 79 16 99 16 102 0.92 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pCP017417_00040 - 312 1.2e-05 25.5 4.2 2 2 4 1e+04 -3.1 0.0 38 54 125 141 115 151 0.53 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP017417_00040 - 312 0.00017 21.8 4.6 1 3 6.8e-08 0.00017 21.8 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP017417_00040 - 312 0.00017 21.8 4.6 2 3 1.1 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP017417_00040 - 312 0.00017 21.8 4.6 3 3 2.1 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 85 pCP017417_00040 - 312 0.0026 18.2 8.9 1 3 0.00099 2.5 8.6 0.3 35 80 5 49 2 53 0.86 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pCP017417_00040 - 312 0.0026 18.2 8.9 2 3 3.4e-06 0.0086 16.5 5.3 2 79 16 101 15 104 0.90 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pCP017417_00040 - 312 0.0026 18.2 8.9 3 3 2 5.2e+03 -2.0 0.1 8 22 285 299 281 302 0.77 Phage integrase, N-terminal SAM-like domain Phyto-Amp PF15438.6 195 pCP017417_00040 - 312 0.0092 15.8 0.3 1 1 6.5e-06 0.017 15.0 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma Phage_int_SAM_3 PF14659.6 58 pCP017417_00040 - 312 0.027 14.7 3.2 1 1 4.2e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain YbjN PF10722.9 127 pCP017417_00040 - 312 0.029 14.4 0.3 1 2 0.00055 1.4 9.0 0.1 38 77 96 135 91 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 pCP017417_00040 - 312 0.029 14.4 0.3 2 2 0.047 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator Prok-TraM PF09228.10 102 pCP017417_00042 - 298 0.085 13.2 0.0 1 1 2e-05 0.18 12.2 0.0 13 93 35 115 24 120 0.89 Prokaryotic Transcriptional repressor TraM Flu_B_M2 PF04772.12 109 pCP017417_00042 - 298 3 8.1 11.1 1 3 2e-05 0.18 12.0 0.3 43 102 80 139 62 142 0.90 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 pCP017417_00042 - 298 3 8.1 11.1 2 3 0.017 1.5e+02 2.6 2.9 26 87 134 195 133 210 0.87 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 pCP017417_00042 - 298 3 8.1 11.1 3 3 0.26 2.3e+03 -1.2 0.0 73 104 235 266 227 270 0.68 Influenza B matrix protein 2 (BM2) TagA PF12561.8 99 pCP017417_00043 - 210 1.1 9.7 3.4 1 2 0.00094 17 5.9 0.7 31 90 68 127 55 133 0.81 ToxR activated gene A lipoprotein domain TagA PF12561.8 99 pCP017417_00043 - 210 1.1 9.7 3.4 2 2 0.0027 49 4.4 0.1 63 88 184 209 166 210 0.84 ToxR activated gene A lipoprotein domain DUF4299 PF14132.6 301 pCP017417_00044 - 116 3.2e-08 33.4 0.1 1 1 6.2e-12 3.7e-08 33.2 0.1 189 300 12 110 5 111 0.85 Domain of unknown function (DUF4299) A2M PF00207.22 92 pCP017417_00044 - 116 0.11 12.3 0.0 1 1 2.6e-05 0.16 11.9 0.0 17 56 49 89 36 94 0.81 Alpha-2-macroglobulin family XPG_I PF00867.18 94 pCP017417_00044 - 116 0.13 12.7 0.0 1 1 2.6e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region AHH PF14412.6 114 pCP017417_00046 - 259 5.3e-16 58.7 1.4 1 1 1.1e-19 9.6e-16 57.9 1.4 10 113 155 241 148 242 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH RRF PF01765.19 162 pCP017417_00046 - 259 0.12 12.3 4.7 1 2 1.8e-05 0.16 11.9 0.1 124 153 163 193 112 199 0.86 Ribosome recycling factor RRF PF01765.19 162 pCP017417_00046 - 259 0.12 12.3 4.7 2 2 0.025 2.3e+02 1.7 1.1 121 146 215 242 207 256 0.69 Ribosome recycling factor Glyco_hydro_59 PF02057.15 294 pCP017417_00048 - 287 0.022 14.0 1.2 1 1 2.4e-06 0.043 13.1 1.2 109 165 106 159 99 178 0.87 Glycosyl hydrolase family 59 Nucleoside_tran PF01733.18 309 pCP017417_00050 - 289 0.15 11.4 2.7 1 1 4.6e-05 0.28 10.5 2.7 71 192 10 129 3 134 0.66 Nucleoside transporter Turandot PF07240.11 81 pCP017417_00050 - 289 0.19 11.7 1.3 1 2 0.75 4.5e+03 -2.3 0.0 17 40 25 48 22 54 0.61 Stress-inducible humoral factor Turandot Turandot PF07240.11 81 pCP017417_00050 - 289 0.19 11.7 1.3 2 2 8e-05 0.48 10.4 0.6 2 28 247 273 246 288 0.77 Stress-inducible humoral factor Turandot Sigma70_ner PF04546.13 204 pCP017417_00050 - 289 0.2 11.5 6.4 1 2 0.03 1.8e+02 1.9 0.4 16 78 33 83 20 120 0.46 Sigma-70, non-essential region Sigma70_ner PF04546.13 204 pCP017417_00050 - 289 0.2 11.5 6.4 2 2 1.7e-05 0.1 12.4 1.0 88 125 238 276 228 285 0.90 Sigma-70, non-essential region Rapsyn_N PF10579.9 80 pCP017417_00052 - 358 0.53 10.4 3.8 1 3 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 pCP017417_00052 - 358 0.53 10.4 3.8 2 3 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 pCP017417_00052 - 358 0.53 10.4 3.8 3 3 0.24 4.3e+03 -2.1 0.1 19 34 340 355 329 356 0.74 Rapsyn N-terminal myristoylation and linker region DUF2768 PF10966.8 58 pCP017417_00053 - 114 0.0086 16.5 0.2 1 2 1.9e-06 0.0086 16.5 0.2 22 57 37 72 35 72 0.95 Protein of unknown function (DUF2768) DUF2768 PF10966.8 58 pCP017417_00053 - 114 0.0086 16.5 0.2 2 2 0.4 1.8e+03 -0.5 1.3 6 13 96 103 79 108 0.53 Protein of unknown function (DUF2768) DiS_P_DiS PF06750.13 84 pCP017417_00053 - 114 0.027 14.6 0.4 1 1 1.2e-05 0.054 13.6 0.4 29 73 6 50 2 59 0.84 Bacterial Peptidase A24 N-terminal domain DZR PF12773.7 49 pCP017417_00053 - 114 0.028 14.4 0.3 1 1 8.3e-06 0.037 14.0 0.3 13 37 5 38 2 45 0.88 Double zinc ribbon zinc_ribbon_4 PF13717.6 36 pCP017417_00053 - 114 0.14 12.1 4.3 1 2 0.072 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP017417_00053 - 114 0.14 12.1 4.3 2 2 3.5e-05 0.16 12.0 0.3 3 16 30 43 29 47 0.86 zinc-ribbon domain Myc-LZ PF02344.15 31 pCP017417_00054 - 34 0.045 13.9 0.4 1 1 3e-06 0.054 13.6 0.4 8 18 15 25 14 27 0.94 Myc leucine zipper domain Importin_rep PF18773.1 40 pCP017417_00055 - 260 0.018 14.7 0.1 1 1 6.7e-06 0.04 13.6 0.1 16 27 231 242 226 249 0.90 Importin 13 repeat DUF327 PF03885.13 143 pCP017417_00055 - 260 0.075 13.0 0.1 1 3 0.41 2.5e+03 -1.7 0.1 97 109 43 55 22 76 0.50 Protein of unknown function (DUF327) DUF327 PF03885.13 143 pCP017417_00055 - 260 0.075 13.0 0.1 2 3 0.96 5.7e+03 -2.8 0.0 22 24 140 142 116 165 0.49 Protein of unknown function (DUF327) DUF327 PF03885.13 143 pCP017417_00055 - 260 0.075 13.0 0.1 3 3 1.3e-05 0.075 13.0 0.1 48 85 217 254 191 258 0.89 Protein of unknown function (DUF327) BLOC1_2 PF10046.9 96 pCP017417_00055 - 260 0.94 9.8 4.4 1 3 2.1 1.2e+04 -3.4 0.1 38 61 48 71 47 73 0.65 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP017417_00055 - 260 0.94 9.8 4.4 2 3 4.3e-05 0.26 11.6 0.4 22 75 115 172 110 179 0.87 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP017417_00055 - 260 0.94 9.8 4.4 3 3 0.81 4.8e+03 -2.1 0.0 70 79 245 254 228 258 0.43 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GPD PF05954.11 304 pCP017417_00056 - 833 5.9e-18 65.2 0.0 1 1 1e-21 9.4e-18 64.5 0.0 22 281 73 360 45 376 0.76 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 pCP017417_00056 - 833 0.11 12.2 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 pCP017417_00056 - 833 0.11 12.2 0.0 2 2 0.00042 3.8 7.2 0.0 19 49 456 486 447 513 0.81 TCL1/MTCP1 family T6SS_TssG PF06996.11 299 pCP017417_00057 - 302 3.5e-47 161.1 0.0 1 1 2.2e-51 3.9e-47 160.9 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG T6SS_TssF PF05947.12 603 pCP017417_00058 - 573 1.6e-110 370.4 0.0 1 1 1e-114 1.8e-110 370.3 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF GPW_gp25 PF04965.14 95 pCP017417_00059 - 130 2.2e-09 36.9 0.0 1 1 4.8e-13 2.9e-09 36.6 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 pCP017417_00059 - 130 0.021 14.7 0.3 1 1 4.5e-06 0.027 14.3 0.3 94 159 21 87 5 92 0.87 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 pCP017417_00059 - 130 0.072 12.6 0.2 1 2 2.9e-05 0.17 11.3 0.1 82 121 5 46 1 64 0.84 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 pCP017417_00059 - 130 0.072 12.6 0.2 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 422 pCP017417_00060 - 484 6e-170 565.6 0.0 1 1 7.9e-174 7.1e-170 565.3 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 pCP017417_00060 - 484 0.33 11.0 2.6 1 4 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pCP017417_00060 - 484 0.33 11.0 2.6 2 4 1.5 1.4e+04 -3.9 0.0 103 117 130 143 127 147 0.66 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pCP017417_00060 - 484 0.33 11.0 2.6 3 4 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pCP017417_00060 - 484 0.33 11.0 2.6 4 4 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 155 pCP017417_00061 - 161 6.4e-52 175.5 3.9 1 1 8e-56 7.2e-52 175.3 3.9 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 pCP017417_00061 - 161 0.14 10.8 0.0 1 1 1.8e-05 0.16 10.5 0.0 171 227 55 111 40 127 0.90 Chitin synthase T6SS_VasJ PF16989.5 255 pCP017417_00062 - 415 1.2e-12 47.9 0.0 1 1 3.9e-16 1.7e-12 47.3 0.0 3 153 176 323 174 408 0.84 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 pCP017417_00062 - 415 0.00014 22.0 0.2 1 2 1.8e-07 0.0008 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 pCP017417_00062 - 415 0.00014 22.0 0.2 2 2 0.31 1.4e+03 -0.6 0.0 47 71 185 209 162 212 0.83 ImpA, N-terminal, type VI secretion system PX PF00787.24 113 pCP017417_00062 - 415 0.074 13.0 14.5 1 3 0.00025 1.1 9.2 2.4 31 111 33 130 20 131 0.67 PX domain PX PF00787.24 113 pCP017417_00062 - 415 0.074 13.0 14.5 2 3 0.00084 3.8 7.5 0.2 16 112 155 275 132 276 0.68 PX domain PX PF00787.24 113 pCP017417_00062 - 415 0.074 13.0 14.5 3 3 0.052 2.3e+02 1.8 0.7 22 97 316 396 296 404 0.70 PX domain TetR_C_24 PF17932.1 114 pCP017417_00062 - 415 0.19 12.0 0.0 1 1 8.8e-05 0.4 11.0 0.0 20 68 71 119 62 132 0.87 Tetracyclin repressor-like, C-terminal domain T6SS-SciN PF12790.7 120 pCP017417_00063 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 428 pCP017417_00064 - 465 4.7e-112 374.8 0.0 1 1 3.1e-116 5.5e-112 374.6 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 205 pCP017417_00065 - 257 3.6e-35 121.5 0.0 1 1 2.3e-39 4.2e-35 121.4 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_HCP PF05638.12 129 pCP017417_00066 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 259 pCP017417_00067 - 1175 6.2e-41 140.5 0.0 1 1 4.1e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 pCP017417_00067 - 1175 5.9e-40 137.1 0.5 1 1 4.1e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 pCP017417_00067 - 1175 8.2e-27 94.5 2.1 1 1 4.9e-30 1.3e-26 93.9 2.1 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 pCP017417_00067 - 1175 0.0003 20.7 0.0 1 2 8.9e-06 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 pCP017417_00067 - 1175 0.0003 20.7 0.0 2 2 0.047 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 pCP017417_00067 - 1175 0.0011 19.0 0.1 1 2 1.7e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 pCP017417_00067 - 1175 0.0011 19.0 0.1 2 2 4.1 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 pCP017417_00067 - 1175 0.0041 16.8 4.8 1 3 1.4e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 pCP017417_00067 - 1175 0.0041 16.8 4.8 2 3 0.13 3.4e+02 0.8 0.0 41 77 451 487 432 583 0.80 O-Antigen ligase Wzy_C PF04932.15 155 pCP017417_00067 - 1175 0.0041 16.8 4.8 3 3 0.076 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 pCP017417_00067 - 1175 0.055 13.2 0.1 1 2 0.00017 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pCP017417_00067 - 1175 0.055 13.2 0.1 2 2 0.76 1.9e+03 -1.3 0.0 22 37 841 856 831 870 0.75 P-loop containing region of AAA domain FHA PF00498.26 69 pCP017417_00068 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 pCP017417_00068 - 299 0.0007 19.9 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 pCP017417_00068 - 299 0.0007 19.9 0.0 2 2 0.23 1.4e+03 -0.3 0.0 31 57 199 225 198 231 0.89 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 pCP017417_00068 - 299 0.05 14.0 3.1 1 2 0.044 2.6e+02 2.1 0.1 18 58 107 147 105 150 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 pCP017417_00068 - 299 0.05 14.0 3.1 2 2 7.4e-05 0.44 11.0 0.9 21 82 151 212 146 218 0.92 Ferredoxin-fold anticodon binding domain DUF3870 PF12986.7 94 pCP017417_00069 - 433 0.11 12.8 0.0 1 1 1.4e-05 0.24 11.6 0.0 11 62 4 58 1 70 0.79 Domain of unknown function (DUF3870) DUF2459 PF09601.10 171 pCP017417_00072 - 432 0.053 13.3 1.1 1 2 1.3e-05 0.12 12.2 0.1 87 163 131 199 119 201 0.72 Protein of unknown function (DUF2459) DUF2459 PF09601.10 171 pCP017417_00072 - 432 0.053 13.3 1.1 2 2 0.32 2.8e+03 -2.1 0.1 143 143 289 289 239 346 0.63 Protein of unknown function (DUF2459) BLOC1_2 PF10046.9 96 pCP017417_00072 - 432 0.1 12.9 2.0 1 2 2.8e-05 0.25 11.7 1.0 44 95 263 314 260 315 0.94 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP017417_00072 - 432 0.1 12.9 2.0 2 2 2 1.8e+04 -4.1 0.0 20 30 349 359 345 364 0.58 Biogenesis of lysosome-related organelles complex-1 subunit 2 Put_DNA-bind_N PF06971.13 49 pCP017417_00073 - 141 0.016 15.2 0.0 1 1 1.5e-06 0.027 14.5 0.0 11 34 4 27 3 30 0.95 Putative DNA-binding protein N-terminus Toprim_3 PF13362.6 95 pCP017417_00074 - 409 2.4e-08 34.2 0.1 1 2 1.4 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pCP017417_00074 - 409 2.4e-08 34.2 0.1 2 2 1.4e-11 6.4e-08 32.9 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pCP017417_00074 - 409 0.017 15.4 0.2 1 2 0.024 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pCP017417_00074 - 409 0.017 15.4 0.2 2 2 0.00027 1.2 9.4 0.0 15 83 283 359 277 382 0.82 Retrotransposon gag protein DUF2315 PF10231.9 123 pCP017417_00074 - 409 0.023 14.8 6.8 1 3 0.00028 1.3 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP017417_00074 - 409 0.023 14.8 6.8 2 3 0.0016 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP017417_00074 - 409 0.023 14.8 6.8 3 3 1.3 5.9e+03 -2.7 0.0 20 90 355 373 339 384 0.54 Apoptogenic protein 1 5_3_exonuc PF01367.20 97 pCP017417_00074 - 409 0.25 12.0 1.7 1 2 0.62 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP017417_00074 - 409 0.25 12.0 1.7 2 2 0.00012 0.53 10.9 0.2 15 81 322 384 321 401 0.72 5'-3' exonuclease, C-terminal SAM fold NYN PF01936.18 147 pCP017417_00076 - 180 1.1e-09 39.0 0.0 1 1 2e-13 1.2e-09 38.8 0.0 60 123 74 146 15 161 0.80 NYN domain Peroxin-22 PF12827.7 113 pCP017417_00076 - 180 0.004 17.0 0.6 1 1 1.3e-06 0.0079 16.1 0.6 25 105 81 162 46 169 0.76 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 pCP017417_00076 - 180 0.029 15.0 0.0 1 1 8.3e-06 0.049 14.2 0.0 61 103 100 142 77 142 0.87 PIN domain AAA_31 PF13614.6 177 pCP017418_00001 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 pCP017418_00001 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pCP017418_00001 - 186 0.0021 18.1 0.9 1 1 2.9e-06 0.017 15.2 0.9 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP017418_00001 - 186 0.014 14.8 0.0 1 1 3.2e-06 0.019 14.4 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase RHH_7 PF16777.5 74 pCP017418_00002 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pCP017418_00003 - 1931 1.4e-16 60.1 0.8 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1016 1272 934 1313 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP017418_00003 - 1931 1.4e-16 60.1 0.8 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP017418_00003 - 1931 1.4e-16 60.1 0.8 3 3 1.1 3.9e+03 -3.8 0.0 172 199 1878 1906 1859 1914 0.75 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP017418_00003 - 1931 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 648 691 638 783 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP017418_00003 - 1931 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 999 1211 998 1242 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP017418_00003 - 1931 4.9e-08 33.2 8.3 3 3 0.34 1.2e+03 -0.7 5.2 33 121 1797 1903 1746 1928 0.65 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP017418_00003 - 1931 9.4e-07 29.2 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1076 1104 1028 1108 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP017418_00003 - 1931 9.4e-07 29.2 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP017418_00003 - 1931 1.3e-05 25.0 2.0 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1003 1108 1002 1204 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP017418_00003 - 1931 1.3e-05 25.0 2.0 2 2 0.15 5.5e+02 0.2 0.1 120 143 1883 1908 1832 1928 0.67 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP017418_00003 - 1931 3e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 371 471 369 474 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP017418_00003 - 1931 3e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 660 699 644 718 0.65 Eco57I restriction-modification methylase HTH_19 PF12844.7 65 pCP017418_00004 - 314 1e-05 25.5 0.2 1 2 0.0055 7.1 6.7 0.0 11 31 9 29 1 42 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 pCP017418_00004 - 314 1e-05 25.5 0.2 2 2 8.1e-06 0.01 15.8 0.0 27 64 116 152 91 153 0.90 Helix-turn-helix domain HTH_3 PF01381.22 55 pCP017418_00004 - 314 5.4e-05 23.2 0.0 1 2 3.6e-07 0.00046 20.2 0.0 2 29 3 30 2 30 0.90 Helix-turn-helix HTH_3 PF01381.22 55 pCP017418_00004 - 314 5.4e-05 23.2 0.0 2 2 0.67 8.6e+02 0.1 0.0 26 55 118 147 107 147 0.85 Helix-turn-helix Phage_CI_repr PF07022.13 65 pCP017418_00004 - 314 0.0011 19.0 0.0 1 2 6.6e-05 0.084 13.0 0.0 11 49 10 47 2 50 0.77 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP017418_00004 - 314 0.0011 19.0 0.0 2 2 0.064 82 3.4 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 pCP017418_00004 - 314 0.0078 15.7 0.0 1 2 8.2e-05 0.11 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pCP017418_00004 - 314 0.0078 15.7 0.0 2 2 0.29 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 pCP017418_00004 - 314 0.015 15.4 0.0 1 1 2.9e-05 0.037 14.2 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 pCP017418_00004 - 314 0.016 15.0 0.1 1 2 5.1e-05 0.065 13.1 0.0 4 36 5 37 2 49 0.75 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 pCP017418_00004 - 314 0.016 15.0 0.1 2 2 2.5 3.2e+03 -1.9 0.1 38 47 290 299 289 300 0.87 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 pCP017418_00004 - 314 0.019 14.7 0.0 1 1 3.5e-05 0.045 13.6 0.0 16 37 7 30 1 36 0.86 Homeodomain-like domain Imm3 PF14425.6 119 pCP017418_00004 - 314 0.042 13.9 0.1 1 1 6.8e-05 0.087 12.9 0.1 33 113 26 104 2 109 0.75 Immunity protein Imm3 HTH_26 PF13443.6 63 pCP017418_00004 - 314 0.071 13.6 0.0 1 1 0.00012 0.16 12.4 0.0 3 30 3 30 1 38 0.88 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.7 51 pCP017418_00004 - 314 0.097 12.9 0.0 1 2 0.13 1.7e+02 2.5 0.0 5 16 3 14 2 16 0.90 Helix-turn-helix domain HTH_17 PF12728.7 51 pCP017418_00004 - 314 0.097 12.9 0.0 2 2 0.0011 1.4 9.2 0.0 5 27 14 36 11 42 0.83 Helix-turn-helix domain HTH_31 PF13560.6 64 pCP017418_00004 - 314 0.1 12.9 0.0 1 1 0.00016 0.2 12.0 0.0 12 33 8 29 2 40 0.88 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 pCP017418_00004 - 314 0.13 11.9 0.0 1 1 0.00027 0.35 10.6 0.0 25 46 9 30 5 30 0.93 Sigma-70, region 4 Phage_AlpA PF05930.12 51 pCP017418_00004 - 314 0.14 12.0 0.0 1 2 0.015 20 5.1 0.0 6 19 2 15 1 18 0.89 Prophage CP4-57 regulatory protein (AlpA) Phage_AlpA PF05930.12 51 pCP017418_00004 - 314 0.14 12.0 0.0 2 2 0.0031 4 7.3 0.0 5 23 12 30 11 35 0.88 Prophage CP4-57 regulatory protein (AlpA) HTH_Mga PF08280.11 60 pCP017418_00004 - 314 0.15 12.1 1.8 1 3 0.0044 5.6 7.1 0.1 21 37 11 27 4 30 0.89 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP017418_00004 - 314 0.15 12.1 1.8 2 3 0.065 83 3.3 0.0 25 59 41 75 32 76 0.80 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP017418_00004 - 314 0.15 12.1 1.8 3 3 9 1.2e+04 -3.5 0.0 46 50 94 98 86 105 0.47 M protein trans-acting positive regulator (MGA) HTH domain Relaxase PF03432.14 242 pCP017418_00005 - 462 5.1e-10 39.4 7.2 1 2 2.9e-14 5.1e-10 39.4 7.2 48 228 119 296 70 309 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP017418_00005 - 462 5.1e-10 39.4 7.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pCP017418_00006 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP017418_00006 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP017418_00006 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP017418_00006 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP017418_00006 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP017418_00006 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP017418_00006 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pCP017418_00006 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP017418_00006 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 pCP017418_00006 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP017418_00006 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain CdvA PF18822.1 123 pCP017418_00007 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP017418_00007 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 pCP017418_00007 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 pCP017418_00007 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP017418_00007 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 pCP017418_00009 - 408 0.00054 20.3 0.0 1 1 6.2e-08 0.0011 19.3 0.0 3 93 270 374 268 376 0.77 Toprim domain DUF4223 PF13978.6 54 pCP017418_00010 - 97 0.007 16.3 0.0 1 1 1.7e-06 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) nec1 PF10379.9 184 pCP017418_00010 - 97 0.067 12.7 0.0 1 1 1.1e-05 0.099 12.1 0.0 65 105 56 94 35 96 0.75 Virulence protein nec1 Sdh_cyt PF01127.22 121 pCP017418_00011 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 pCP017418_00011 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 pCP017418_00011 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pCP017418_00013 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pCP017418_00014 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pCP017418_00015 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP017418_00015 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP017418_00015 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP017418_00015 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP017418_00015 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pCP017418_00015 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 pCP017418_00015 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pCP017418_00015 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP017418_00015 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pCP017418_00015 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pCP017418_00015 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP017418_00015 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP017418_00015 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 pCP017418_00016 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP017418_00016 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP017418_00016 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP017418_00016 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP017418_00016 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP017418_00016 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP017418_00016 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain CRISPR_Cas2 PF09827.9 76 pCP017418_00017 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP017418_00017 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 TrbC PF04956.13 99 pCP017418_00019 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP017418_00019 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pCP017418_00020 - 922 4e-51 174.0 0.4 1 1 2e-54 9.1e-51 172.9 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP017418_00020 - 922 3.7e-21 75.1 1.1 1 1 1.4e-24 6.4e-21 74.4 1.1 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 pCP017418_00020 - 922 4.4e-07 29.2 0.5 1 1 2.2e-10 1e-06 28.0 0.5 23 320 547 845 535 859 0.73 AAA-like domain DUF87 PF01935.17 227 pCP017418_00020 - 922 0.0092 16.1 2.9 1 5 0.46 2e+03 -1.4 0.1 96 202 139 253 122 280 0.55 Helicase HerA, central domain DUF87 PF01935.17 227 pCP017418_00020 - 922 0.0092 16.1 2.9 2 5 0.95 4.3e+03 -2.4 0.0 87 124 263 298 245 301 0.78 Helicase HerA, central domain DUF87 PF01935.17 227 pCP017418_00020 - 922 0.0092 16.1 2.9 3 5 0.00038 1.7 8.7 0.0 26 49 548 571 539 591 0.86 Helicase HerA, central domain DUF87 PF01935.17 227 pCP017418_00020 - 922 0.0092 16.1 2.9 4 5 0.0074 33 4.5 0.2 100 163 638 700 625 733 0.77 Helicase HerA, central domain DUF87 PF01935.17 227 pCP017418_00020 - 922 0.0092 16.1 2.9 5 5 0.55 2.5e+03 -1.7 0.0 43 108 751 811 747 849 0.65 Helicase HerA, central domain Phage_pRha PF09669.10 88 pCP017418_00021 - 185 6.6e-30 103.5 0.0 1 1 1.7e-33 1e-29 102.9 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCP017418_00021 - 185 0.0051 16.9 0.0 1 1 1.8e-06 0.011 15.9 0.0 23 90 27 94 23 96 0.94 Uncharacterized protein conserved in archaea (DUF2250) DUF5512 PF17631.2 139 pCP017418_00021 - 185 0.094 12.7 0.0 1 1 3.5e-05 0.21 11.6 0.0 77 131 80 130 61 134 0.85 Family of unknown function (DUF5512) DUF3251 PF11622.8 165 pCP017418_00022 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pCP017418_00022 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pCP017418_00022 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pCP017418_00022 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP017418_00022 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP017418_00022 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pCP017418_00022 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP017418_00022 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP017418_00022 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pCP017418_00022 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pCP017418_00022 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pCP017418_00022 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP017418_00022 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP017418_00022 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pCP017418_00023 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pCP017418_00024 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP017418_00024 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP017418_00024 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP017418_00024 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP017418_00024 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP017418_00024 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP017418_00024 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pCP017418_00025 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP017418_00025 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP017418_00025 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP017418_00025 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP017418_00025 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pCP017418_00025 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pCP017418_00025 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pCP017418_00025 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP017418_00025 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 pCP017418_00025 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pCP017418_00025 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pCP017418_00025 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pCP017418_00025 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 pCP017418_00025 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pCP017418_00025 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain TrbL PF04610.14 215 pCP017418_00026 - 332 2.7e-31 109.0 32.0 1 2 6e-35 2.7e-31 109.0 32.0 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP017418_00026 - 332 2.7e-31 109.0 32.0 2 2 0.23 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein DUF3176 PF11374.8 107 pCP017418_00026 - 332 0.088 13.0 0.5 1 4 0.39 1.8e+03 -0.8 0.0 19 32 30 43 8 58 0.73 Protein of unknown function (DUF3176) DUF3176 PF11374.8 107 pCP017418_00026 - 332 0.088 13.0 0.5 2 4 2e-05 0.088 13.0 0.5 62 105 119 166 106 168 0.78 Protein of unknown function (DUF3176) DUF3176 PF11374.8 107 pCP017418_00026 - 332 0.088 13.0 0.5 3 4 0.62 2.8e+03 -1.5 0.2 85 106 195 216 176 217 0.49 Protein of unknown function (DUF3176) DUF3176 PF11374.8 107 pCP017418_00026 - 332 0.088 13.0 0.5 4 4 1.5 6.6e+03 -2.7 0.1 86 94 240 248 219 256 0.54 Protein of unknown function (DUF3176) T_cell_tran_alt PF15128.6 92 pCP017418_00026 - 332 0.18 11.6 1.6 1 2 0.1 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP017418_00026 - 332 0.18 11.6 1.6 2 2 0.00023 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP017418_00026 - 332 1.7 9.7 5.2 1 1 0.00061 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pCP017418_00027 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP017418_00027 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pCP017418_00028 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP017418_00028 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pCP017418_00029 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP017418_00029 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP017418_00029 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pCP017418_00030 - 390 3.1e-48 164.1 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 193 374 193 374 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP017418_00030 - 390 0.028 13.5 0.1 1 1 4.8e-06 0.043 12.9 0.1 31 81 321 371 304 376 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pCP017418_00031 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP017418_00031 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP017418_00031 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP017418_00031 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP017418_00031 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP017418_00031 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP017418_00031 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP017418_00031 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP017418_00031 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP017418_00031 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP017418_00031 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP017418_00031 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP017418_00031 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP017418_00031 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP017418_00031 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP017418_00031 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP017418_00031 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP017418_00031 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP017418_00031 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP017418_00031 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP017418_00031 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP017418_00031 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP017418_00031 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP017418_00031 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP017418_00031 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP017418_00031 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP017418_00031 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP017418_00031 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP017418_00031 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP017418_00031 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP017418_00031 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP017418_00031 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pCP017418_00032 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP017418_00032 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP017418_00032 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP017418_00032 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP017418_00032 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pCP017418_00033 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pCP017418_00033 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pCP017418_00033 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP017418_00033 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP017418_00033 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pCP017418_00034 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pCP017418_00035 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCP017418_00035 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP017418_00035 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP017418_00035 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP017418_00035 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP017418_00035 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pCP017418_00037 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP017418_00037 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pCP017418_00038 - 687 1e-96 324.5 8.2 1 1 4.8e-100 1.4e-96 324.0 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP017418_00038 - 687 1.5e-12 47.6 0.4 1 2 3.1e-15 9.4e-12 45.1 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP017418_00038 - 687 1.5e-12 47.6 0.4 2 2 1.3 3.9e+03 -1.9 0.1 38 55 537 555 487 568 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP017418_00038 - 687 1.5e-06 27.9 5.0 1 1 1.3e-09 3.8e-06 26.6 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger EF-hand_8 PF13833.6 55 pCP017418_00038 - 687 0.079 12.8 0.0 1 1 9.4e-05 0.28 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zinc_ribbon_9 PF14369.6 35 pCP017418_00038 - 687 0.22 11.8 0.7 1 2 2.9 8.7e+03 -2.9 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP017418_00038 - 687 0.22 11.8 0.7 2 2 0.00013 0.38 11.0 0.0 18 32 624 638 614 640 0.76 zinc-ribbon HTH_34 PF13601.6 80 pCP017418_00038 - 687 0.4 10.9 3.3 1 3 0.61 1.8e+03 -0.8 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP017418_00038 - 687 0.4 10.9 3.3 2 3 1.8 5.3e+03 -2.3 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP017418_00038 - 687 0.4 10.9 3.3 3 3 0.00027 0.79 9.9 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain PcfJ PF14284.6 144 pCP017418_00039 - 473 5.2e-05 23.2 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP017418_00039 - 473 0.022 14.7 4.0 1 2 0.14 1.2e+03 -0.7 0.2 12 60 218 271 211 299 0.70 Intein splicing domain Intein_splicing PF14890.6 134 pCP017418_00039 - 473 0.022 14.7 4.0 2 2 3.6e-06 0.032 14.2 1.5 37 125 311 444 264 453 0.74 Intein splicing domain GTP_EFTU PF00009.27 194 pCP017418_00041 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP017418_00041 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP017418_00041 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP017418_00041 - 639 9.3e-17 60.8 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP017418_00041 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP017418_00041 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP017418_00041 - 639 0.00031 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP017418_00041 - 639 0.018 14.9 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP017418_00041 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP017418_00041 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family DUF5442 PF17514.2 107 pCP017418_00042 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pCP017418_00042 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 pCP017418_00044 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pCP017418_00044 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pCP017418_00044 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 pCP017418_00045 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCP017418_00045 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pCP017418_00045 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP017418_00045 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pCP017418_00046 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCP017418_00046 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 pCP017418_00047 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP017418_00047 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP017418_00047 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pCP017418_00047 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pCP017418_00047 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pCP017418_00047 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP017418_00047 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP017418_00047 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP017418_00047 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 pCP017418_00048 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP017418_00048 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP017418_00048 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP017418_00048 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP017418_00048 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP017418_00048 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pCP017418_00049 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP017418_00049 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) Toprim_3 PF13362.6 95 pCP017854_00001 - 409 1.6e-08 34.8 0.2 1 2 1.1 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pCP017854_00001 - 409 1.6e-08 34.8 0.2 2 2 7.1e-12 4.3e-08 33.4 0.0 3 94 271 376 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pCP017854_00001 - 409 0.016 15.4 0.1 1 2 0.018 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pCP017854_00001 - 409 0.016 15.4 0.1 2 2 0.00022 1.3 9.3 0.0 15 83 283 359 277 369 0.80 Retrotransposon gag protein DUF2315 PF10231.9 123 pCP017854_00001 - 409 0.017 15.2 6.4 1 3 0.00021 1.2 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP017854_00001 - 409 0.017 15.2 6.4 2 3 0.0012 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP017854_00001 - 409 0.017 15.2 6.4 3 3 0.93 5.5e+03 -2.6 0.0 21 91 356 374 339 385 0.55 Apoptogenic protein 1 DUF4223 PF13978.6 54 pCP017854_00002 - 92 0.0072 16.3 0.0 1 1 1.5e-06 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pCP017854_00002 - 92 0.15 12.0 0.0 1 1 4e-05 0.36 10.8 0.0 9 39 22 56 16 59 0.84 STI1 domain TOPRIM_C PF16898.5 128 pCP017854_00003 - 69 0.029 14.7 1.5 1 1 1.7e-06 0.031 14.6 1.5 63 124 8 68 2 69 0.88 C-terminal associated domain of TOPRIM Pkinase PF00069.25 264 pCP017854_00004 - 336 5.1e-29 101.4 6.3 1 1 4.2e-32 9.5e-29 100.6 6.3 5 153 156 304 153 315 0.90 Protein kinase domain Pkinase_Tyr PF07714.17 259 pCP017854_00004 - 336 2e-26 92.8 0.9 1 1 1.4e-29 3.2e-26 92.2 0.9 6 158 157 303 154 315 0.88 Protein tyrosine kinase Pkinase_fungal PF17667.1 408 pCP017854_00004 - 336 4e-06 25.9 0.8 1 1 2.6e-09 5.9e-06 25.3 0.8 314 364 254 301 238 318 0.78 Fungal protein kinase DUF2841 PF11001.8 124 pCP017854_00004 - 336 0.0032 17.5 0.9 1 2 2.6 5.9e+03 -2.7 0.0 10 56 22 69 17 75 0.60 Protein of unknown function (DUF2841) DUF2841 PF11001.8 124 pCP017854_00004 - 336 0.0032 17.5 0.9 2 2 3.9e-06 0.0087 16.1 0.7 15 88 179 263 162 323 0.71 Protein of unknown function (DUF2841) RIO1 PF01163.22 188 pCP017854_00004 - 336 0.0073 15.9 2.5 1 2 2 4.5e+03 -3.0 0.0 20 34 46 60 37 78 0.60 RIO1 family RIO1 PF01163.22 188 pCP017854_00004 - 336 0.0073 15.9 2.5 2 2 3.3e-06 0.0073 15.9 2.5 25 150 167 291 151 302 0.74 RIO1 family ORC6 PF05460.13 357 pCP017854_00004 - 336 0.0086 15.4 0.2 1 1 5.4e-06 0.012 14.9 0.2 192 282 163 254 116 268 0.78 Origin recognition complex subunit 6 (ORC6) Pectate_lyase_3 PF12708.7 215 pCP017854_00004 - 336 0.068 13.0 0.4 1 1 6e-05 0.14 12.0 0.4 49 199 148 324 143 333 0.59 Pectate lyase superfamily protein Pex19 PF04614.12 244 pCP017854_00004 - 336 3.6 7.3 5.4 1 1 0.0033 7.5 6.2 5.4 152 207 172 228 168 231 0.87 Pex19 protein family HicB_lk_antitox PF15919.5 123 pCP017854_00006 - 72 3.6e-09 36.8 0.0 1 1 4.2e-13 3.8e-09 36.7 0.0 3 60 5 61 3 71 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 pCP017854_00006 - 72 0.065 12.6 0.0 1 1 7.9e-06 0.071 12.5 0.0 12 60 21 69 15 72 0.92 IRSp53/MIM homology domain AAA_25 PF13481.6 194 pCP017854_00007 - 597 1.8e-15 57.0 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP017854_00007 - 597 0.00087 18.7 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP017854_00007 - 597 0.00087 18.7 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP017854_00007 - 597 0.0012 18.6 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP017854_00007 - 597 0.0012 18.6 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 pCP017854_00007 - 597 0.0035 17.1 0.0 1 1 2.5e-06 0.0073 16.0 0.0 5 122 36 172 32 207 0.72 AAA domain ATPase PF06745.13 231 pCP017854_00007 - 597 0.011 15.1 0.1 1 2 2.1e-05 0.064 12.6 0.0 16 70 30 83 26 214 0.87 KaiC ATPase PF06745.13 231 pCP017854_00007 - 597 0.011 15.1 0.1 2 2 0.51 1.5e+03 -1.7 0.0 137 160 329 352 321 358 0.83 KaiC CbiA PF01656.23 128 pCP017854_00007 - 597 0.18 11.9 0.9 1 1 0.00018 0.53 10.4 1.0 1 29 35 63 35 537 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain GBR_NSP5 PF17580.2 176 pCP017854_00008 - 150 0.013 15.3 0.4 1 1 1.3e-06 0.024 14.5 0.4 17 64 43 90 26 97 0.78 Group B Rotavirus Non-structural protein 5 Resolvase PF00239.21 146 pCP017854_00010 - 204 1.6e-33 115.9 0.7 1 1 4.7e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP017854_00010 - 204 0.024 14.4 0.8 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP017854_00010 - 204 0.024 14.4 0.8 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP017854_00010 - 204 0.024 14.4 0.8 3 3 0.01 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP017854_00010 - 204 0.028 14.5 4.9 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP017854_00010 - 204 0.028 14.5 4.9 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP017854_00010 - 204 0.028 14.5 4.9 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCP017854_00010 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP017854_00010 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP017854_00010 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pCP017854_00011 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP017854_00011 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pCP017854_00011 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pCP017854_00013 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP017854_00013 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pCP017854_00014 - 922 1.3e-51 175.6 0.7 1 1 5e-55 3e-51 174.5 0.7 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP017854_00014 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pCP017854_00014 - 922 0.045 13.2 0.1 1 1 1.6e-05 0.096 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pCP017854_00015 - 185 1e-28 99.7 0.0 1 1 1.8e-32 1.6e-28 99.1 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCP017854_00015 - 185 0.00048 20.2 0.0 1 1 1.1e-07 0.001 19.1 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) DUF3251 PF11622.8 165 pCP017854_00016 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pCP017854_00016 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pCP017854_00016 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pCP017854_00016 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP017854_00016 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP017854_00016 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pCP017854_00016 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP017854_00016 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP017854_00016 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pCP017854_00016 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pCP017854_00016 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pCP017854_00016 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP017854_00016 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP017854_00016 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pCP017854_00017 - 140 2.6e-25 88.5 0.1 1 1 1.9e-29 3.5e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pCP017854_00018 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP017854_00018 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP017854_00018 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP017854_00018 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP017854_00018 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP017854_00018 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP017854_00018 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pCP017854_00019 - 328 5e-28 98.9 13.9 1 1 2.4e-31 7.2e-28 98.3 13.9 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP017854_00019 - 328 0.0042 17.2 1.4 1 3 0.88 2.6e+03 -1.4 0.0 30 53 134 157 122 164 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP017854_00019 - 328 0.0042 17.2 1.4 2 3 5.4e-06 0.016 15.3 0.1 18 82 195 259 188 263 0.92 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP017854_00019 - 328 0.0042 17.2 1.4 3 3 1.2 3.7e+03 -1.9 0.0 62 79 302 319 292 327 0.75 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP017854_00019 - 328 0.007 17.1 5.8 1 2 0.034 1e+02 3.6 0.5 93 135 105 145 40 182 0.61 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP017854_00019 - 328 0.007 17.1 5.8 2 2 2.3e-06 0.007 17.1 5.8 47 125 219 315 203 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 pCP017854_00019 - 328 0.092 13.4 3.4 1 2 1.7 5.1e+03 -1.9 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP017854_00019 - 328 0.092 13.4 3.4 2 2 2.6e-05 0.078 13.6 1.0 32 84 209 270 202 295 0.83 von Willebrand factor type A domain Phage_holin_6_1 PF09682.10 101 pCP017854_00019 - 328 0.13 12.7 8.7 1 2 9.1e-05 0.27 11.7 0.3 4 62 77 136 75 154 0.81 Bacteriophage holin of superfamily 6 (Holin_LLH) Phage_holin_6_1 PF09682.10 101 pCP017854_00019 - 328 0.13 12.7 8.7 2 2 0.017 51 4.4 2.4 36 90 268 323 251 327 0.83 Bacteriophage holin of superfamily 6 (Holin_LLH) DUF3752 PF12572.8 152 pCP017854_00019 - 328 2.8 8.5 8.6 1 2 0.0033 9.9 6.7 0.4 21 49 106 136 98 153 0.70 Protein of unknown function (DUF3752) DUF3752 PF12572.8 152 pCP017854_00019 - 328 2.8 8.5 8.6 2 2 0.01 31 5.1 2.6 33 106 233 320 218 328 0.76 Protein of unknown function (DUF3752) TrbL PF04610.14 215 pCP017854_00020 - 330 4.7e-29 101.7 31.2 1 2 7.8e-33 4.7e-29 101.7 31.2 1 214 38 250 38 253 0.91 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP017854_00020 - 330 4.7e-29 101.7 31.2 2 2 0.11 6.3e+02 -0.0 0.4 55 88 281 324 242 330 0.42 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP017854_00020 - 330 0.22 11.3 1.3 1 2 0.19 1.2e+03 -0.6 0.1 38 65 68 101 59 114 0.50 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP017854_00020 - 330 0.22 11.3 1.3 2 2 0.00013 0.79 9.6 0.1 30 81 235 286 201 298 0.76 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP017854_00020 - 330 1.7 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 297 327 290 329 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pCP017854_00021 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP017854_00021 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pCP017854_00022 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP017854_00022 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pCP017854_00023 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP017854_00023 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP017854_00023 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pCP017854_00024 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP017854_00024 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pCP017854_00025 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP017854_00025 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP017854_00025 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP017854_00025 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP017854_00025 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP017854_00025 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP017854_00025 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP017854_00025 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP017854_00025 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP017854_00025 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP017854_00025 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP017854_00025 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP017854_00025 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP017854_00025 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP017854_00025 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP017854_00025 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP017854_00025 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP017854_00025 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP017854_00025 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP017854_00025 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP017854_00025 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP017854_00025 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP017854_00025 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP017854_00025 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP017854_00025 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP017854_00025 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP017854_00025 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP017854_00025 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP017854_00025 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP017854_00025 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP017854_00025 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP017854_00025 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pCP017854_00026 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP017854_00026 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP017854_00026 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP017854_00026 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP017854_00026 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pCP017854_00027 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pCP017854_00027 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pCP017854_00027 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP017854_00027 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP017854_00027 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pCP017854_00028 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pCP017854_00029 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCP017854_00029 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP017854_00029 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP017854_00029 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP017854_00029 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP017854_00029 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pCP017854_00031 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP017854_00031 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pCP017854_00032 - 676 9.9e-97 324.5 8.2 1 1 4.5e-100 1.4e-96 324.1 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP017854_00032 - 676 1.4e-12 47.7 0.4 1 2 3.1e-15 9.1e-12 45.1 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP017854_00032 - 676 1.4e-12 47.7 0.4 2 2 1.2 3.7e+03 -1.8 0.1 38 55 537 555 487 569 0.63 Toprim domain zinc_ribbon_9 PF14369.6 35 pCP017854_00032 - 676 0.05 13.9 0.7 1 2 2.9 8.5e+03 -2.9 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP017854_00032 - 676 0.05 13.9 0.7 2 2 2.7e-05 0.079 13.2 0.0 18 35 624 641 614 641 0.76 zinc-ribbon zf-C4_Topoisom PF01396.19 39 pCP017854_00032 - 676 0.057 13.2 2.4 1 1 5.4e-05 0.16 11.8 2.4 2 27 628 656 627 665 0.89 Topoisomerase DNA binding C4 zinc finger EF-hand_8 PF13833.6 55 pCP017854_00032 - 676 0.077 12.9 0.0 1 1 9.3e-05 0.28 11.1 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 pCP017854_00032 - 676 0.27 11.4 2.9 1 3 0.59 1.8e+03 -0.8 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP017854_00032 - 676 0.27 11.4 2.9 2 3 1.6 4.9e+03 -2.2 0.1 46 63 472 489 470 493 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP017854_00032 - 676 0.27 11.4 2.9 3 3 0.00026 0.78 10.0 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain PcfJ PF14284.6 144 pCP017854_00033 - 473 5.1e-05 23.2 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP017854_00033 - 473 0.02 14.8 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pCP017854_00035 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP017854_00035 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP017854_00035 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP017854_00035 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP017854_00035 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP017854_00035 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP017854_00035 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP017854_00035 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP017854_00035 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP017854_00035 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family Sgf11 PF08209.11 33 pCP017854_00036 - 91 0.11 12.1 0.8 1 1 1.3e-05 0.23 11.1 0.8 4 13 74 83 72 85 0.90 Sgf11 (transcriptional regulation protein) CtsR_C PF17727.1 72 pCP017854_00037 - 101 0.031 14.4 0.2 1 2 0.00036 3.2 7.9 0.0 3 37 6 40 3 47 0.86 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP017854_00037 - 101 0.031 14.4 0.2 2 2 0.003 27 5.0 0.0 28 48 49 69 45 85 0.85 CtsR C-terminal dimerization domain Lip_prot_lig_C PF10437.9 85 pCP017854_00037 - 101 0.049 13.6 2.7 1 2 0.05 4.5e+02 0.9 0.0 59 83 4 26 2 29 0.71 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCP017854_00037 - 101 0.049 13.6 2.7 2 2 1.9e-05 0.17 11.9 2.2 3 83 15 98 13 99 0.76 Bacterial lipoate protein ligase C-terminus LysE PF01810.18 193 pCP017854_00038 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP017854_00038 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP017854_00038 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 pCP017854_00038 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 pCP017854_00038 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 pCP017854_00038 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 pCP017854_00038 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 pCP017854_00038 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP017854_00038 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP017854_00038 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP017854_00038 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 pCP017854_00038 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 pCP017854_00039 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP017854_00039 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP017854_00039 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP017854_00039 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP017854_00039 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP017854_00039 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pCP017854_00040 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP017854_00040 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pCP017854_00041 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP017854_00041 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP017854_00041 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP017854_00041 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP017854_00041 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP017854_00041 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pCP017854_00042 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pCP017854_00043 - 1937 2.2e-16 59.5 2.2 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP017854_00043 - 1937 2.2e-16 59.5 2.2 2 3 0.71 2.5e+03 -3.2 0.0 245 283 1469 1512 1462 1527 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP017854_00043 - 1937 2.2e-16 59.5 2.2 3 3 0.2 7.1e+02 -1.3 0.1 169 209 1876 1924 1845 1925 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP017854_00043 - 1937 5e-08 33.1 8.3 1 3 2.3 8.1e+03 -3.4 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP017854_00043 - 1937 5e-08 33.1 8.3 2 3 1.4e-11 5e-08 33.1 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP017854_00043 - 1937 5e-08 33.1 8.3 3 3 0.46 1.6e+03 -1.1 5.7 36 121 1801 1904 1747 1933 0.56 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP017854_00043 - 1937 9.5e-07 29.2 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP017854_00043 - 1937 9.5e-07 29.2 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1466 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP017854_00043 - 1937 1.1e-05 25.3 2.2 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP017854_00043 - 1937 1.1e-05 25.3 2.2 2 2 0.1 3.7e+02 0.8 0.1 119 150 1883 1916 1832 1933 0.69 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP017854_00043 - 1937 3.1e-05 24.4 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP017854_00043 - 1937 3.1e-05 24.4 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase DUF3800 PF12686.7 120 pCP017854_00044 - 263 6e-06 26.9 8.9 1 2 1e-09 6e-06 26.9 8.9 3 117 6 188 4 192 0.61 Protein of unknown function (DUF3800) DUF3800 PF12686.7 120 pCP017854_00044 - 263 6e-06 26.9 8.9 2 2 0.36 2.2e+03 -0.7 1.1 45 63 208 236 189 256 0.56 Protein of unknown function (DUF3800) CM_2 PF01817.21 75 pCP017854_00044 - 263 0.032 14.6 0.2 1 1 1.4e-05 0.082 13.3 0.2 20 75 35 95 30 95 0.84 Chorismate mutase type II Myb_DNA-bind_3 PF12776.7 96 pCP017854_00044 - 263 2 9.5 5.3 1 2 0.13 7.6e+02 1.2 0.4 49 63 103 117 57 143 0.71 Myb/SANT-like DNA-binding domain Myb_DNA-bind_3 PF12776.7 96 pCP017854_00044 - 263 2 9.5 5.3 2 2 0.00026 1.6 9.8 0.4 12 72 187 245 179 251 0.85 Myb/SANT-like DNA-binding domain Relaxase PF03432.14 242 pCP017854_00045 - 462 3.6e-10 39.9 7.2 1 2 2e-14 3.6e-10 39.9 7.2 49 229 120 297 70 310 0.73 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP017854_00045 - 462 3.6e-10 39.9 7.2 2 2 0.018 3.3e+02 0.7 6.4 119 183 326 395 318 426 0.69 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pCP017854_00046 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP017854_00046 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP017854_00046 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP017854_00046 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP017854_00046 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP017854_00046 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP017854_00046 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pCP017854_00046 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP017854_00046 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pCP017854_00046 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP017854_00046 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 pCP017854_00047 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pCP017854_00047 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP017854_00047 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pCP017854_00047 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP017854_00047 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide GTP_EFTU PF00009.27 194 pCP017857_00001 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP017857_00001 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP017857_00001 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP017857_00001 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP017857_00001 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP017857_00001 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP017857_00001 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP017857_00001 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP017857_00001 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP017857_00001 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family Sgf11 PF08209.11 33 pCP017857_00002 - 91 0.11 12.1 0.8 1 1 1.3e-05 0.23 11.1 0.8 4 13 74 83 72 85 0.90 Sgf11 (transcriptional regulation protein) CtsR_C PF17727.1 72 pCP017857_00003 - 101 0.031 14.4 0.2 1 2 0.00036 3.2 7.9 0.0 3 37 6 40 3 47 0.86 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP017857_00003 - 101 0.031 14.4 0.2 2 2 0.003 27 5.0 0.0 28 48 49 69 45 85 0.85 CtsR C-terminal dimerization domain Lip_prot_lig_C PF10437.9 85 pCP017857_00003 - 101 0.049 13.6 2.7 1 2 0.05 4.5e+02 0.9 0.0 59 83 4 26 2 29 0.71 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCP017857_00003 - 101 0.049 13.6 2.7 2 2 1.9e-05 0.17 11.9 2.2 3 83 15 98 13 99 0.76 Bacterial lipoate protein ligase C-terminus LysE PF01810.18 193 pCP017857_00004 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP017857_00004 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP017857_00004 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 pCP017857_00004 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 pCP017857_00004 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 pCP017857_00004 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 pCP017857_00004 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 pCP017857_00004 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP017857_00004 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP017857_00004 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP017857_00004 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 pCP017857_00004 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 pCP017857_00005 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP017857_00005 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP017857_00005 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP017857_00005 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP017857_00005 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP017857_00005 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pCP017857_00006 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP017857_00006 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pCP017857_00007 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP017857_00007 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP017857_00007 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP017857_00007 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP017857_00007 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP017857_00007 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pCP017857_00008 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pCP017857_00009 - 1937 2.2e-16 59.5 2.2 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP017857_00009 - 1937 2.2e-16 59.5 2.2 2 3 0.71 2.5e+03 -3.2 0.0 245 283 1469 1512 1462 1527 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP017857_00009 - 1937 2.2e-16 59.5 2.2 3 3 0.2 7.1e+02 -1.3 0.1 169 209 1876 1924 1845 1925 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP017857_00009 - 1937 5e-08 33.1 8.3 1 3 2.3 8.1e+03 -3.4 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP017857_00009 - 1937 5e-08 33.1 8.3 2 3 1.4e-11 5e-08 33.1 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP017857_00009 - 1937 5e-08 33.1 8.3 3 3 0.46 1.6e+03 -1.1 5.7 36 121 1801 1904 1747 1933 0.56 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP017857_00009 - 1937 9.5e-07 29.2 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP017857_00009 - 1937 9.5e-07 29.2 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1466 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP017857_00009 - 1937 1.1e-05 25.3 2.2 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP017857_00009 - 1937 1.1e-05 25.3 2.2 2 2 0.1 3.7e+02 0.8 0.1 119 150 1883 1916 1832 1933 0.69 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP017857_00009 - 1937 3.1e-05 24.4 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP017857_00009 - 1937 3.1e-05 24.4 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase DUF3800 PF12686.7 120 pCP017857_00010 - 263 6e-06 26.9 8.9 1 2 1e-09 6e-06 26.9 8.9 3 117 6 188 4 192 0.61 Protein of unknown function (DUF3800) DUF3800 PF12686.7 120 pCP017857_00010 - 263 6e-06 26.9 8.9 2 2 0.36 2.2e+03 -0.7 1.1 45 63 208 236 189 256 0.56 Protein of unknown function (DUF3800) CM_2 PF01817.21 75 pCP017857_00010 - 263 0.032 14.6 0.2 1 1 1.4e-05 0.082 13.3 0.2 20 75 35 95 30 95 0.84 Chorismate mutase type II Myb_DNA-bind_3 PF12776.7 96 pCP017857_00010 - 263 2 9.5 5.3 1 2 0.13 7.6e+02 1.2 0.4 49 63 103 117 57 143 0.71 Myb/SANT-like DNA-binding domain Myb_DNA-bind_3 PF12776.7 96 pCP017857_00010 - 263 2 9.5 5.3 2 2 0.00026 1.6 9.8 0.4 12 72 187 245 179 251 0.85 Myb/SANT-like DNA-binding domain Relaxase PF03432.14 242 pCP017857_00011 - 462 3.6e-10 39.9 7.2 1 2 2e-14 3.6e-10 39.9 7.2 49 229 120 297 70 310 0.73 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP017857_00011 - 462 3.6e-10 39.9 7.2 2 2 0.018 3.3e+02 0.7 6.4 119 183 326 395 318 426 0.69 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pCP017857_00012 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP017857_00012 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP017857_00012 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP017857_00012 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP017857_00012 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP017857_00012 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP017857_00012 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pCP017857_00012 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP017857_00012 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pCP017857_00012 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP017857_00012 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 pCP017857_00013 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pCP017857_00013 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP017857_00013 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pCP017857_00013 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP017857_00013 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 pCP017857_00016 - 409 1.6e-08 34.8 0.2 1 2 1.1 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pCP017857_00016 - 409 1.6e-08 34.8 0.2 2 2 7.1e-12 4.3e-08 33.4 0.0 3 94 271 376 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pCP017857_00016 - 409 0.016 15.4 0.1 1 2 0.018 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pCP017857_00016 - 409 0.016 15.4 0.1 2 2 0.00022 1.3 9.3 0.0 15 83 283 359 277 369 0.80 Retrotransposon gag protein DUF2315 PF10231.9 123 pCP017857_00016 - 409 0.017 15.2 6.4 1 3 0.00021 1.2 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP017857_00016 - 409 0.017 15.2 6.4 2 3 0.0012 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP017857_00016 - 409 0.017 15.2 6.4 3 3 0.93 5.5e+03 -2.6 0.0 21 91 356 374 339 385 0.55 Apoptogenic protein 1 DUF4223 PF13978.6 54 pCP017857_00017 - 92 0.0072 16.3 0.0 1 1 1.5e-06 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pCP017857_00017 - 92 0.15 12.0 0.0 1 1 4e-05 0.36 10.8 0.0 9 39 22 56 16 59 0.84 STI1 domain TOPRIM_C PF16898.5 128 pCP017857_00018 - 69 0.029 14.7 1.5 1 1 1.7e-06 0.031 14.6 1.5 63 124 8 68 2 69 0.88 C-terminal associated domain of TOPRIM Pkinase PF00069.25 264 pCP017857_00019 - 336 5.1e-29 101.4 6.3 1 1 4.2e-32 9.5e-29 100.6 6.3 5 153 156 304 153 315 0.90 Protein kinase domain Pkinase_Tyr PF07714.17 259 pCP017857_00019 - 336 2e-26 92.8 0.9 1 1 1.4e-29 3.2e-26 92.2 0.9 6 158 157 303 154 315 0.88 Protein tyrosine kinase Pkinase_fungal PF17667.1 408 pCP017857_00019 - 336 4e-06 25.9 0.8 1 1 2.6e-09 5.9e-06 25.3 0.8 314 364 254 301 238 318 0.78 Fungal protein kinase DUF2841 PF11001.8 124 pCP017857_00019 - 336 0.0032 17.5 0.9 1 2 2.6 5.9e+03 -2.7 0.0 10 56 22 69 17 75 0.60 Protein of unknown function (DUF2841) DUF2841 PF11001.8 124 pCP017857_00019 - 336 0.0032 17.5 0.9 2 2 3.9e-06 0.0087 16.1 0.7 15 88 179 263 162 323 0.71 Protein of unknown function (DUF2841) RIO1 PF01163.22 188 pCP017857_00019 - 336 0.0073 15.9 2.5 1 2 2 4.5e+03 -3.0 0.0 20 34 46 60 37 78 0.60 RIO1 family RIO1 PF01163.22 188 pCP017857_00019 - 336 0.0073 15.9 2.5 2 2 3.3e-06 0.0073 15.9 2.5 25 150 167 291 151 302 0.74 RIO1 family ORC6 PF05460.13 357 pCP017857_00019 - 336 0.0086 15.4 0.2 1 1 5.4e-06 0.012 14.9 0.2 192 282 163 254 116 268 0.78 Origin recognition complex subunit 6 (ORC6) Pectate_lyase_3 PF12708.7 215 pCP017857_00019 - 336 0.068 13.0 0.4 1 1 6e-05 0.14 12.0 0.4 49 199 148 324 143 333 0.59 Pectate lyase superfamily protein Pex19 PF04614.12 244 pCP017857_00019 - 336 3.6 7.3 5.4 1 1 0.0033 7.5 6.2 5.4 152 207 172 228 168 231 0.87 Pex19 protein family HicB_lk_antitox PF15919.5 123 pCP017857_00021 - 72 3.6e-09 36.8 0.0 1 1 4.2e-13 3.8e-09 36.7 0.0 3 60 5 61 3 71 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 pCP017857_00021 - 72 0.065 12.6 0.0 1 1 7.9e-06 0.071 12.5 0.0 12 60 21 69 15 72 0.92 IRSp53/MIM homology domain AAA_25 PF13481.6 194 pCP017857_00022 - 597 1.8e-15 57.0 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP017857_00022 - 597 0.00087 18.7 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP017857_00022 - 597 0.00087 18.7 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP017857_00022 - 597 0.0012 18.6 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP017857_00022 - 597 0.0012 18.6 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 pCP017857_00022 - 597 0.0035 17.1 0.0 1 1 2.5e-06 0.0073 16.0 0.0 5 122 36 172 32 207 0.72 AAA domain ATPase PF06745.13 231 pCP017857_00022 - 597 0.011 15.1 0.1 1 2 2.1e-05 0.064 12.6 0.0 16 70 30 83 26 214 0.87 KaiC ATPase PF06745.13 231 pCP017857_00022 - 597 0.011 15.1 0.1 2 2 0.51 1.5e+03 -1.7 0.0 137 160 329 352 321 358 0.83 KaiC CbiA PF01656.23 128 pCP017857_00022 - 597 0.18 11.9 0.9 1 1 0.00018 0.53 10.4 1.0 1 29 35 63 35 537 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain GBR_NSP5 PF17580.2 176 pCP017857_00023 - 150 0.013 15.3 0.4 1 1 1.3e-06 0.024 14.5 0.4 17 64 43 90 26 97 0.78 Group B Rotavirus Non-structural protein 5 Resolvase PF00239.21 146 pCP017857_00025 - 204 1.6e-33 115.9 0.7 1 1 4.7e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP017857_00025 - 204 0.024 14.4 0.8 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP017857_00025 - 204 0.024 14.4 0.8 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP017857_00025 - 204 0.024 14.4 0.8 3 3 0.01 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP017857_00025 - 204 0.028 14.5 4.9 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP017857_00025 - 204 0.028 14.5 4.9 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP017857_00025 - 204 0.028 14.5 4.9 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCP017857_00025 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP017857_00025 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP017857_00025 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pCP017857_00026 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP017857_00026 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pCP017857_00026 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pCP017857_00028 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP017857_00028 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pCP017857_00029 - 922 1.3e-51 175.6 0.7 1 1 5e-55 3e-51 174.5 0.7 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP017857_00029 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pCP017857_00029 - 922 0.045 13.2 0.1 1 1 1.6e-05 0.096 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pCP017857_00030 - 185 1e-28 99.7 0.0 1 1 1.8e-32 1.6e-28 99.1 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCP017857_00030 - 185 0.00048 20.2 0.0 1 1 1.1e-07 0.001 19.1 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) DUF3251 PF11622.8 165 pCP017857_00031 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pCP017857_00031 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pCP017857_00031 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pCP017857_00031 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP017857_00031 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP017857_00031 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pCP017857_00031 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP017857_00031 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP017857_00031 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pCP017857_00031 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pCP017857_00031 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pCP017857_00031 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP017857_00031 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP017857_00031 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pCP017857_00032 - 140 2.6e-25 88.5 0.1 1 1 1.9e-29 3.5e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pCP017857_00033 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP017857_00033 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP017857_00033 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP017857_00033 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP017857_00033 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP017857_00033 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP017857_00033 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pCP017857_00034 - 328 5e-28 98.9 13.9 1 1 2.4e-31 7.2e-28 98.3 13.9 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP017857_00034 - 328 0.0042 17.2 1.4 1 3 0.88 2.6e+03 -1.4 0.0 30 53 134 157 122 164 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP017857_00034 - 328 0.0042 17.2 1.4 2 3 5.4e-06 0.016 15.3 0.1 18 82 195 259 188 263 0.92 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP017857_00034 - 328 0.0042 17.2 1.4 3 3 1.2 3.7e+03 -1.9 0.0 62 79 302 319 292 327 0.75 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP017857_00034 - 328 0.007 17.1 5.8 1 2 0.034 1e+02 3.6 0.5 93 135 105 145 40 182 0.61 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP017857_00034 - 328 0.007 17.1 5.8 2 2 2.3e-06 0.007 17.1 5.8 47 125 219 315 203 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 pCP017857_00034 - 328 0.092 13.4 3.4 1 2 1.7 5.1e+03 -1.9 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP017857_00034 - 328 0.092 13.4 3.4 2 2 2.6e-05 0.078 13.6 1.0 32 84 209 270 202 295 0.83 von Willebrand factor type A domain Phage_holin_6_1 PF09682.10 101 pCP017857_00034 - 328 0.13 12.7 8.7 1 2 9.1e-05 0.27 11.7 0.3 4 62 77 136 75 154 0.81 Bacteriophage holin of superfamily 6 (Holin_LLH) Phage_holin_6_1 PF09682.10 101 pCP017857_00034 - 328 0.13 12.7 8.7 2 2 0.017 51 4.4 2.4 36 90 268 323 251 327 0.83 Bacteriophage holin of superfamily 6 (Holin_LLH) DUF3752 PF12572.8 152 pCP017857_00034 - 328 2.8 8.5 8.6 1 2 0.0033 9.9 6.7 0.4 21 49 106 136 98 153 0.70 Protein of unknown function (DUF3752) DUF3752 PF12572.8 152 pCP017857_00034 - 328 2.8 8.5 8.6 2 2 0.01 31 5.1 2.6 33 106 233 320 218 328 0.76 Protein of unknown function (DUF3752) TrbL PF04610.14 215 pCP017857_00035 - 330 4.7e-29 101.7 31.2 1 2 7.8e-33 4.7e-29 101.7 31.2 1 214 38 250 38 253 0.91 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP017857_00035 - 330 4.7e-29 101.7 31.2 2 2 0.11 6.3e+02 -0.0 0.4 55 88 281 324 242 330 0.42 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP017857_00035 - 330 0.22 11.3 1.3 1 2 0.19 1.2e+03 -0.6 0.1 38 65 68 101 59 114 0.50 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP017857_00035 - 330 0.22 11.3 1.3 2 2 0.00013 0.79 9.6 0.1 30 81 235 286 201 298 0.76 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP017857_00035 - 330 1.7 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 297 327 290 329 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pCP017857_00036 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP017857_00036 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pCP017857_00037 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP017857_00037 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pCP017857_00038 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP017857_00038 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP017857_00038 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pCP017857_00039 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP017857_00039 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pCP017857_00040 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP017857_00040 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP017857_00040 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP017857_00040 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP017857_00040 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP017857_00040 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP017857_00040 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP017857_00040 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP017857_00040 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP017857_00040 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP017857_00040 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP017857_00040 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP017857_00040 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP017857_00040 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP017857_00040 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP017857_00040 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP017857_00040 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP017857_00040 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP017857_00040 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP017857_00040 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP017857_00040 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP017857_00040 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP017857_00040 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP017857_00040 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP017857_00040 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP017857_00040 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP017857_00040 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP017857_00040 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP017857_00040 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP017857_00040 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP017857_00040 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP017857_00040 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pCP017857_00041 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP017857_00041 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP017857_00041 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP017857_00041 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP017857_00041 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pCP017857_00042 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pCP017857_00042 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pCP017857_00042 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP017857_00042 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP017857_00042 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pCP017857_00043 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pCP017857_00044 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCP017857_00044 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP017857_00044 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP017857_00044 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP017857_00044 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP017857_00044 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pCP017857_00046 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP017857_00046 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pCP017857_00047 - 676 9.9e-97 324.5 8.2 1 1 4.5e-100 1.4e-96 324.1 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP017857_00047 - 676 1.4e-12 47.7 0.4 1 2 3.1e-15 9.1e-12 45.1 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP017857_00047 - 676 1.4e-12 47.7 0.4 2 2 1.2 3.7e+03 -1.8 0.1 38 55 537 555 487 569 0.63 Toprim domain zinc_ribbon_9 PF14369.6 35 pCP017857_00047 - 676 0.05 13.9 0.7 1 2 2.9 8.5e+03 -2.9 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP017857_00047 - 676 0.05 13.9 0.7 2 2 2.7e-05 0.079 13.2 0.0 18 35 624 641 614 641 0.76 zinc-ribbon zf-C4_Topoisom PF01396.19 39 pCP017857_00047 - 676 0.057 13.2 2.4 1 1 5.4e-05 0.16 11.8 2.4 2 27 628 656 627 665 0.89 Topoisomerase DNA binding C4 zinc finger EF-hand_8 PF13833.6 55 pCP017857_00047 - 676 0.077 12.9 0.0 1 1 9.3e-05 0.28 11.1 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 pCP017857_00047 - 676 0.27 11.4 2.9 1 3 0.59 1.8e+03 -0.8 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP017857_00047 - 676 0.27 11.4 2.9 2 3 1.6 4.9e+03 -2.2 0.1 46 63 472 489 470 493 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP017857_00047 - 676 0.27 11.4 2.9 3 3 0.00026 0.78 10.0 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain PcfJ PF14284.6 144 pCP017857_00048 - 473 5.1e-05 23.2 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP017857_00048 - 473 0.02 14.8 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain IMS PF00817.20 150 pCP018901_00001 - 126 1.1e-06 28.7 0.1 1 1 1.7e-10 3e-06 27.3 0.1 1 80 10 122 10 126 0.71 impB/mucB/samB family DUF4368 PF14287.6 67 pCP018901_00002 - 628 3.6e-23 81.6 2.1 1 1 3.2e-26 1.2e-22 80.0 2.1 2 66 472 537 471 538 0.92 Domain of unknown function (DUF4368) Recombinase PF07508.13 104 pCP018901_00002 - 628 3.6e-22 78.7 0.7 1 2 2.2 7.8e+03 -2.7 0.0 8 32 133 157 132 173 0.80 Recombinase Recombinase PF07508.13 104 pCP018901_00002 - 628 3.6e-22 78.7 0.7 2 2 3.8e-25 1.4e-21 76.9 0.2 1 101 183 303 183 305 0.96 Recombinase Resolvase PF00239.21 146 pCP018901_00002 - 628 5.2e-21 75.3 0.1 1 3 1.5e-24 5.2e-21 75.3 0.1 2 146 9 161 8 161 0.90 Resolvase, N terminal domain Resolvase PF00239.21 146 pCP018901_00002 - 628 5.2e-21 75.3 0.1 2 3 0.11 4e+02 1.1 2.0 21 62 380 422 373 520 0.78 Resolvase, N terminal domain Resolvase PF00239.21 146 pCP018901_00002 - 628 5.2e-21 75.3 0.1 3 3 1 3.6e+03 -2.1 1.6 123 142 579 598 549 602 0.65 Resolvase, N terminal domain Zn_ribbon_recom PF13408.6 58 pCP018901_00002 - 628 1.4e-12 47.9 2.6 1 1 1.2e-15 4.3e-12 46.3 2.6 1 58 318 380 318 380 0.84 Recombinase zinc beta ribbon domain Xrn1_D3 PF18194.1 71 pCP018901_00002 - 628 0.12 12.5 0.5 1 2 0.00011 0.38 10.9 0.1 2 28 376 402 375 412 0.91 Exoribonuclease 1 Domain-3 Xrn1_D3 PF18194.1 71 pCP018901_00002 - 628 0.12 12.5 0.5 2 2 4.2 1.5e+04 -3.8 0.0 33 50 464 481 459 484 0.73 Exoribonuclease 1 Domain-3 TnpV PF14198.6 112 pCP018901_00003 - 114 3.3e-41 139.8 0.5 1 1 2e-45 3.6e-41 139.6 0.5 1 112 4 112 4 112 0.99 Transposon-encoded protein TnpV AAA_18 PF13238.6 130 pCP018901_00004 - 172 1.2e-14 55.0 0.0 1 1 4e-17 1.5e-14 54.6 0.0 1 122 7 133 7 141 0.78 AAA domain AAA_33 PF13671.6 143 pCP018901_00004 - 172 2.4e-11 44.0 0.0 1 1 7.5e-14 2.9e-11 43.7 0.0 2 136 7 144 6 147 0.80 AAA domain CPT PF07931.12 174 pCP018901_00004 - 172 2.8e-10 40.3 0.0 1 1 1.4e-12 5.4e-10 39.4 0.0 1 170 4 170 4 172 0.79 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 199 pCP018901_00004 - 172 1.5e-07 30.9 0.0 1 1 7.8e-10 3.1e-07 29.9 0.0 18 160 6 138 2 169 0.77 Zeta toxin AAA_28 PF13521.6 163 pCP018901_00004 - 172 3.6e-06 27.3 0.2 1 2 2.5e-08 9.9e-06 25.9 0.0 2 65 7 74 6 86 0.73 AAA domain AAA_28 PF13521.6 163 pCP018901_00004 - 172 3.6e-06 27.3 0.2 2 2 4.3 1.7e+03 -0.9 0.0 34 127 99 125 88 159 0.52 AAA domain AAA PF00004.29 132 pCP018901_00004 - 172 8.3e-06 26.3 0.0 1 2 1.3e-07 5.1e-05 23.7 0.0 2 25 8 31 7 83 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP018901_00004 - 172 8.3e-06 26.3 0.0 2 2 1.8 6.9e+02 0.6 0.0 112 131 116 135 96 168 0.67 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 136 pCP018901_00004 - 172 8.6e-06 26.2 0.0 1 1 8.7e-08 3.4e-05 24.3 0.0 1 128 10 131 10 138 0.76 AAA domain AAA_22 PF13401.6 137 pCP018901_00004 - 172 1.5e-05 25.3 0.0 1 2 1.4e-07 5.4e-05 23.5 0.0 4 43 3 42 1 88 0.83 AAA domain AAA_22 PF13401.6 137 pCP018901_00004 - 172 1.5e-05 25.3 0.0 2 2 3.3 1.3e+03 -0.4 0.0 61 97 120 155 91 162 0.70 AAA domain AAA_14 PF13173.6 131 pCP018901_00004 - 172 5.9e-05 23.1 0.0 1 1 2.1e-07 8e-05 22.7 0.0 2 123 4 137 3 145 0.74 AAA domain AAA_16 PF13191.6 170 pCP018901_00004 - 172 0.00029 21.2 0.0 1 1 9.3e-07 0.00036 21.0 0.0 22 61 2 42 1 134 0.81 AAA ATPase domain DUF2075 PF09848.9 363 pCP018901_00004 - 172 0.00097 18.5 0.3 1 1 2.9e-06 0.0011 18.2 0.3 2 27 5 32 4 146 0.89 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 146 pCP018901_00004 - 172 0.0016 18.8 0.0 1 1 8.4e-06 0.0033 17.8 0.0 9 39 3 33 1 49 0.84 AAA domain KTI12 PF08433.10 272 pCP018901_00004 - 172 0.0016 18.0 0.1 1 2 8.8e-06 0.0034 16.9 0.0 3 42 6 44 5 87 0.76 Chromatin associated protein KTI12 KTI12 PF08433.10 272 pCP018901_00004 - 172 0.0016 18.0 0.1 2 2 4.5 1.8e+03 -1.9 0.0 120 122 126 128 100 165 0.54 Chromatin associated protein KTI12 AAA_30 PF13604.6 192 pCP018901_00004 - 172 0.0021 17.8 0.1 1 1 8.8e-06 0.0034 17.1 0.1 17 40 3 26 1 40 0.84 AAA domain AAA_24 PF13479.6 197 pCP018901_00004 - 172 0.0022 17.8 0.3 1 1 9.1e-06 0.0036 17.1 0.3 3 33 5 40 3 172 0.76 AAA domain ABC_tran PF00005.27 137 pCP018901_00004 - 172 0.0025 18.3 0.0 1 1 7.5e-06 0.0029 18.1 0.0 9 51 2 43 1 147 0.82 ABC transporter TIP49 PF06068.13 351 pCP018901_00004 - 172 0.0047 16.2 0.3 1 2 4.6e-05 0.018 14.3 0.0 50 75 4 29 1 46 0.81 TIP49 P-loop domain TIP49 PF06068.13 351 pCP018901_00004 - 172 0.0047 16.2 0.3 2 2 1.2 4.9e+02 -0.3 0.2 141 182 119 160 99 169 0.71 TIP49 P-loop domain APS_kinase PF01583.20 158 pCP018901_00004 - 172 0.0047 16.8 0.0 1 2 0.00023 0.088 12.7 0.0 1 46 3 46 3 95 0.65 Adenylylsulphate kinase APS_kinase PF01583.20 158 pCP018901_00004 - 172 0.0047 16.8 0.0 2 2 0.33 1.3e+02 2.4 0.0 45 76 119 150 98 167 0.86 Adenylylsulphate kinase ATPase PF06745.13 231 pCP018901_00004 - 172 0.0061 15.9 0.7 1 2 3.8e-05 0.015 14.7 0.1 18 38 3 23 1 39 0.87 KaiC ATPase PF06745.13 231 pCP018901_00004 - 172 0.0061 15.9 0.7 2 2 2.3 9e+02 -1.0 0.1 98 120 124 149 100 169 0.47 KaiC T2SSE PF00437.20 273 pCP018901_00004 - 172 0.011 14.9 0.0 1 1 3.9e-05 0.015 14.3 0.0 130 154 5 29 1 71 0.87 Type II/IV secretion system protein DnaB_C PF03796.15 255 pCP018901_00004 - 172 0.015 14.7 0.5 1 2 0.0002 0.077 12.3 0.0 17 47 2 32 1 41 0.84 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP018901_00004 - 172 0.015 14.7 0.5 2 2 0.77 3e+02 0.5 0.1 49 92 104 144 96 171 0.45 DnaB-like helicase C terminal domain SRP54 PF00448.22 196 pCP018901_00004 - 172 0.015 14.9 0.1 1 1 8.6e-05 0.033 13.8 0.0 3 40 6 42 4 46 0.81 SRP54-type protein, GTPase domain ATPase_2 PF01637.18 233 pCP018901_00004 - 172 0.015 15.2 0.1 1 2 0.0024 0.93 9.4 0.0 19 54 3 38 1 67 0.80 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pCP018901_00004 - 172 0.015 15.2 0.1 2 2 0.09 35 4.2 0.1 48 93 102 151 95 172 0.61 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 168 pCP018901_00004 - 172 0.016 15.1 0.5 1 1 8.1e-05 0.031 14.2 0.2 2 22 7 27 6 37 0.88 NTPase Viral_helicase1 PF01443.18 234 pCP018901_00004 - 172 0.016 14.9 0.0 1 1 6.2e-05 0.024 14.4 0.0 1 60 7 75 7 89 0.66 Viral (Superfamily 1) RNA helicase RuvB_N PF05496.12 159 pCP018901_00004 - 172 0.018 14.8 0.1 1 2 0.00019 0.073 12.8 0.0 36 59 7 30 3 47 0.86 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 pCP018901_00004 - 172 0.018 14.8 0.1 2 2 2.8 1.1e+03 -0.7 0.0 96 139 111 158 102 164 0.58 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 194 pCP018901_00004 - 172 0.018 14.6 0.3 1 3 0.00017 0.066 12.8 0.1 32 54 3 25 1 28 0.88 AAA domain AAA_25 PF13481.6 194 pCP018901_00004 - 172 0.018 14.6 0.3 2 3 7 2.7e+03 -2.3 0.0 118 174 56 74 30 85 0.48 AAA domain AAA_25 PF13481.6 194 pCP018901_00004 - 172 0.018 14.6 0.3 3 3 4.7 1.8e+03 -1.7 0.0 63 89 96 121 92 162 0.53 AAA domain Cytidylate_kin2 PF13189.6 179 pCP018901_00004 - 172 0.024 14.8 0.2 1 2 0.036 14 5.7 0.1 1 22 6 27 6 33 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 pCP018901_00004 - 172 0.024 14.8 0.2 2 2 0.011 4.2 7.5 0.0 108 147 99 138 41 143 0.88 Cytidylate kinase-like family Rad17 PF03215.15 186 pCP018901_00004 - 172 0.03 14.3 0.0 1 2 0.00038 0.15 12.0 0.0 45 69 4 28 1 41 0.87 Rad17 P-loop domain Rad17 PF03215.15 186 pCP018901_00004 - 172 0.03 14.3 0.0 2 2 1.9 7.4e+02 -0.1 0.0 113 146 110 145 98 164 0.71 Rad17 P-loop domain Hydin_ADK PF17213.3 198 pCP018901_00004 - 172 0.032 14.5 0.7 1 1 0.00013 0.05 13.9 0.2 2 22 7 27 6 31 0.92 Hydin Adenylate kinase-like domain NB-ARC PF00931.22 252 pCP018901_00004 - 172 0.037 13.2 0.0 1 1 0.00017 0.065 12.4 0.0 21 47 5 30 1 49 0.84 NB-ARC domain MKT1_N PF12247.8 90 pCP018901_00004 - 172 0.04 14.3 0.0 1 1 0.00022 0.084 13.2 0.0 14 52 39 75 35 160 0.90 Temperature dependent protein affecting M2 dsRNA replication ArsA_ATPase PF02374.15 305 pCP018901_00004 - 172 0.042 13.0 0.1 1 2 0.00023 0.089 12.0 0.0 2 44 5 46 4 84 0.80 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 pCP018901_00004 - 172 0.042 13.0 0.1 2 2 4.6 1.8e+03 -2.2 0.0 265 278 134 147 105 169 0.50 Anion-transporting ATPase NACHT PF05729.12 166 pCP018901_00004 - 172 0.045 13.7 0.0 1 1 0.00016 0.064 13.2 0.0 1 31 5 35 5 74 0.75 NACHT domain AAA_11 PF13086.6 261 pCP018901_00004 - 172 0.046 13.5 1.0 1 1 0.00017 0.067 13.0 0.9 16 41 3 28 1 164 0.90 AAA domain RNA_helicase PF00910.22 107 pCP018901_00004 - 172 0.047 14.1 0.0 1 1 0.00022 0.086 13.2 0.0 1 35 7 42 7 77 0.71 RNA helicase Sigma54_activat PF00158.26 168 pCP018901_00004 - 172 0.053 13.2 0.0 1 1 0.00023 0.091 12.5 0.0 25 67 7 56 1 89 0.73 Sigma-54 interaction domain GvpD PF07088.11 484 pCP018901_00004 - 172 0.054 12.1 0.3 1 3 0.00096 0.38 9.3 0.0 9 26 3 20 1 39 0.87 GvpD gas vesicle protein GvpD PF07088.11 484 pCP018901_00004 - 172 0.054 12.1 0.3 2 3 0.46 1.8e+02 0.5 0.0 31 64 97 129 79 146 0.67 GvpD gas vesicle protein GvpD PF07088.11 484 pCP018901_00004 - 172 0.054 12.1 0.3 3 3 1.5 6e+02 -1.2 0.0 363 390 120 147 104 163 0.74 GvpD gas vesicle protein AAA_7 PF12775.7 181 pCP018901_00004 - 172 0.056 13.0 0.2 1 2 0.00028 0.11 12.0 0.0 31 64 2 35 1 47 0.83 P-loop containing dynein motor region AAA_7 PF12775.7 181 pCP018901_00004 - 172 0.056 13.0 0.2 2 2 5.8 2.2e+03 -2.0 0.0 74 90 116 132 97 166 0.59 P-loop containing dynein motor region IstB_IS21 PF01695.17 178 pCP018901_00004 - 172 0.073 12.8 0.1 1 2 0.0004 0.16 11.7 0.0 48 70 5 27 1 47 0.84 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP018901_00004 - 172 0.073 12.8 0.1 2 2 9.2 3.6e+03 -2.5 0.0 133 148 99 114 96 136 0.63 IstB-like ATP binding protein PhoH PF02562.16 205 pCP018901_00004 - 172 0.076 12.5 0.1 1 1 0.00043 0.17 11.3 0.1 18 43 3 28 1 36 0.81 PhoH-like protein Ploopntkinase1 PF18748.1 196 pCP018901_00004 - 172 0.086 12.4 0.0 1 2 0.22 86 2.6 0.0 16 41 3 29 1 41 0.78 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 pCP018901_00004 - 172 0.086 12.4 0.0 2 2 0.005 2 7.9 0.0 93 164 72 143 56 152 0.75 P-loop Nucleotide Kinase1 ATP-synt_ab PF00006.25 213 pCP018901_00004 - 172 0.086 12.5 0.0 1 1 0.00024 0.094 12.4 0.0 12 71 2 121 1 140 0.68 ATP synthase alpha/beta family, nucleotide-binding domain IPT PF01745.16 233 pCP018901_00004 - 172 0.098 12.0 0.2 1 2 0.00062 0.24 10.7 0.1 3 25 6 28 4 42 0.91 Isopentenyl transferase IPT PF01745.16 233 pCP018901_00004 - 172 0.098 12.0 0.2 2 2 3.8 1.5e+03 -1.6 0.0 193 211 126 144 81 156 0.63 Isopentenyl transferase Ploopntkinase3 PF18751.1 185 pCP018901_00004 - 172 0.11 12.4 0.4 1 2 0.00095 0.37 10.7 0.0 3 33 4 34 1 49 0.80 P-loop Nucleotide Kinase3 Ploopntkinase3 PF18751.1 185 pCP018901_00004 - 172 0.11 12.4 0.4 2 2 4.5 1.7e+03 -1.3 0.0 108 145 101 139 94 155 0.68 P-loop Nucleotide Kinase3 CoaE PF01121.20 179 pCP018901_00004 - 172 0.18 11.5 0.7 1 2 0.026 10 5.7 0.1 2 21 6 25 5 31 0.87 Dephospho-CoA kinase CoaE PF01121.20 179 pCP018901_00004 - 172 0.18 11.5 0.7 2 2 0.074 29 4.3 0.0 125 149 108 132 95 146 0.82 Dephospho-CoA kinase APH PF01636.23 240 pCP018901_00005 - 305 8.6e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pCP018901_00005 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pCP018901_00005 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pCP018901_00005 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pCP018901_00005 - 305 0.09 12.4 0.4 1 1 5.2e-05 0.15 11.6 0.4 68 119 244 294 238 303 0.88 TMEM95 family EcKinase PF02958.20 294 pCP018901_00005 - 305 0.098 12.0 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 pCP018901_00006 - 139 1.3e-51 175.6 0.1 1 1 8.3e-56 1.5e-51 175.5 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase APH PF01636.23 240 pCP018901_00007 - 250 6.8e-11 42.6 0.0 1 1 9.1e-15 8.1e-11 42.3 0.0 34 218 45 220 16 242 0.81 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pCP018901_00007 - 250 0.014 14.6 0.1 1 2 0.00011 1 8.5 0.0 52 94 44 84 11 91 0.72 Fructosamine kinase Fructosamin_kin PF03881.14 288 pCP018901_00007 - 250 0.014 14.6 0.1 2 2 0.0019 17 4.5 0.1 184 251 168 237 107 246 0.75 Fructosamine kinase CPT PF07931.12 174 pCP018901_00008 - 146 4e-06 26.8 0.0 1 1 1.4e-09 4.9e-06 26.5 0.0 59 172 20 137 11 139 0.78 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 130 pCP018901_00008 - 146 9.4e-06 26.2 0.0 1 1 3.2e-09 1.2e-05 25.9 0.0 46 122 15 98 1 106 0.77 AAA domain AAA_33 PF13671.6 143 pCP018901_00008 - 146 0.00063 19.9 0.0 1 1 2.2e-07 0.0008 19.6 0.0 55 136 30 109 9 112 0.82 AAA domain MKT1_N PF12247.8 90 pCP018901_00008 - 146 0.027 14.8 0.0 1 1 1.7e-05 0.063 13.6 0.0 15 52 5 40 3 131 0.90 Temperature dependent protein affecting M2 dsRNA replication AAA_17 PF13207.6 136 pCP018901_00008 - 146 0.14 12.6 0.0 1 1 5.4e-05 0.19 12.1 0.0 55 128 27 96 12 103 0.73 AAA domain DUF3847 PF12958.7 81 pCP018901_00009 - 119 1.8e-31 108.1 8.2 1 1 5.7e-35 2.6e-31 107.6 8.2 1 81 6 89 6 89 0.98 Protein of unknown function (DUF3847) CENP-Q PF13094.6 168 pCP018901_00009 - 119 0.034 14.3 11.9 1 1 9.8e-06 0.044 14.0 11.9 46 96 5 56 2 115 0.74 CENP-Q, a CENPA-CAD centromere complex subunit TPR_8 PF13181.6 34 pCP018901_00009 - 119 0.078 13.2 0.1 1 1 4.4e-05 0.2 12.0 0.1 6 27 20 41 16 48 0.89 Tetratricopeptide repeat PHM7_cyt PF14703.6 176 pCP018901_00009 - 119 4.2 7.6 7.2 1 1 0.0015 6.6 6.9 7.2 40 87 3 56 1 111 0.75 Cytosolic domain of 10TM putative phosphate transporter MobA_MobL PF03389.15 222 pCP018901_00010 - 183 3.5e-50 170.8 0.0 1 1 2.2e-54 3.9e-50 170.6 0.0 1 133 17 154 17 178 0.95 MobA/MobL family AAA_25 PF13481.6 194 pCP018901_00011 - 623 4.9e-30 104.5 0.0 1 1 8.5e-33 8.9e-30 103.7 0.0 11 193 306 475 297 476 0.87 AAA domain Toprim_2 PF13155.6 90 pCP018901_00011 - 623 6.6e-18 64.9 0.0 1 2 2.4e-20 2.5e-17 63.1 0.0 1 90 189 278 189 278 0.91 Toprim-like Toprim_2 PF13155.6 90 pCP018901_00011 - 623 6.6e-18 64.9 0.0 2 2 4.5 4.7e+03 -1.9 0.1 44 77 393 427 381 441 0.75 Toprim-like DUF3991 PF13154.6 76 pCP018901_00011 - 623 3.3e-14 53.0 0.0 1 2 1.6e-16 1.7e-13 50.7 0.0 1 74 112 183 112 185 0.93 Protein of unknown function (DUF3991) DUF3991 PF13154.6 76 pCP018901_00011 - 623 3.3e-14 53.0 0.0 2 2 2.8 3e+03 -1.3 0.0 6 19 589 602 587 620 0.71 Protein of unknown function (DUF3991) DnaB_C PF03796.15 255 pCP018901_00011 - 623 8.6e-09 35.1 0.0 1 2 0.00037 0.39 10.0 0.0 19 45 329 355 326 366 0.87 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP018901_00011 - 623 8.6e-09 35.1 0.0 2 2 4.7e-08 4.9e-05 22.8 0.0 90 185 385 478 369 490 0.79 DnaB-like helicase C terminal domain Toprim_3 PF13362.6 95 pCP018901_00011 - 623 1.8e-08 34.6 0.2 1 2 4.2e-10 4.4e-07 30.2 0.0 2 92 188 281 187 283 0.86 Toprim domain Toprim_3 PF13362.6 95 pCP018901_00011 - 623 1.8e-08 34.6 0.2 2 2 0.46 4.8e+02 1.2 0.6 40 85 393 439 381 446 0.77 Toprim domain ATPase PF06745.13 231 pCP018901_00011 - 623 7.2e-06 25.5 0.1 1 1 1.9e-07 0.0002 20.8 0.0 16 171 326 478 324 511 0.73 KaiC AAA_22 PF13401.6 137 pCP018901_00011 - 623 0.0002 21.6 0.0 1 1 5.5e-07 0.00058 20.2 0.0 6 130 330 470 329 475 0.76 AAA domain NACHT PF05729.12 166 pCP018901_00011 - 623 0.0033 17.4 0.0 1 2 1.1 1.1e+03 -0.7 0.0 43 71 6 33 3 43 0.76 NACHT domain NACHT PF05729.12 166 pCP018901_00011 - 623 0.0033 17.4 0.0 2 2 2.5e-05 0.027 14.4 0.0 2 28 331 357 330 429 0.89 NACHT domain Toprim_4 PF13662.6 89 pCP018901_00011 - 623 0.0078 16.7 0.0 1 1 2.5e-05 0.026 15.0 0.0 47 88 227 267 212 268 0.81 Toprim domain AAA_5 PF07728.14 138 pCP018901_00011 - 623 0.018 15.0 0.0 1 1 6e-05 0.063 13.3 0.0 3 26 333 357 332 406 0.82 AAA domain (dynein-related subfamily) Rad51 PF08423.11 255 pCP018901_00011 - 623 0.05 12.8 0.0 1 1 0.00051 0.54 9.5 0.0 34 190 326 475 324 494 0.69 Rad51 Toprim PF01751.22 103 pCP018901_00011 - 623 0.051 13.8 0.0 1 1 0.00011 0.12 12.7 0.0 51 87 222 258 204 269 0.85 Toprim domain AAA_11 PF13086.6 261 pCP018901_00011 - 623 0.065 13.0 0.0 1 2 0.24 2.6e+02 1.2 0.0 50 97 230 271 208 294 0.80 AAA domain AAA_11 PF13086.6 261 pCP018901_00011 - 623 0.065 13.0 0.0 2 2 0.00095 1 9.1 0.0 18 43 330 355 320 400 0.76 AAA domain RNA_helicase PF00910.22 107 pCP018901_00011 - 623 0.13 12.7 0.0 1 2 2.6 2.8e+03 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 pCP018901_00011 - 623 0.13 12.7 0.0 2 2 0.00069 0.73 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase PhoH PF02562.16 205 pCP018901_00011 - 623 0.17 11.3 0.0 1 1 0.00034 0.36 10.3 0.0 20 47 330 357 322 362 0.88 PhoH-like protein zf-CHC2 PF01807.20 98 pCP018901_00011 - 623 0.18 11.7 0.0 1 1 0.00035 0.37 10.6 0.0 44 88 40 82 8 90 0.84 CHC2 zinc finger DUF2075 PF09848.9 363 pCP018901_00011 - 623 0.2 10.8 0.0 1 1 0.00031 0.33 10.2 0.0 2 26 330 354 329 398 0.89 Uncharacterized conserved protein (DUF2075) IMS_C PF11799.8 118 pCP018901_00012 - 236 1.1e-12 48.7 0.0 1 1 2.1e-16 1.9e-12 48.0 0.0 8 111 94 221 90 226 0.91 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 32 pCP018901_00012 - 236 0.00028 21.0 0.1 1 1 7.5e-08 0.00067 19.8 0.1 6 32 19 46 16 46 0.92 IMS family HHH motif DUF447 PF04289.12 176 pCP018901_00014 - 130 0.029 14.2 0.1 1 1 7.3e-06 0.044 13.6 0.1 42 111 21 87 19 97 0.84 Protein of unknown function (DUF447) WH1 PF00568.23 111 pCP018901_00014 - 130 0.032 14.1 0.3 1 1 8.2e-06 0.049 13.6 0.2 10 80 29 98 20 108 0.85 WH1 domain Cob_adeno_trans PF01923.18 164 pCP018901_00014 - 130 0.04 14.0 0.1 1 1 9.1e-06 0.054 13.6 0.1 26 104 38 127 34 130 0.78 Cobalamin adenosyltransferase DUF3825 PF12873.7 239 pCP018901_00015 - 335 4.2e-29 101.7 0.3 1 1 3.7e-33 6.7e-29 101.0 0.3 1 239 106 330 106 330 0.86 Domain of unknown function (DUF3825) SGT1 PF07093.11 583 pCP018901_00017 - 50 0.046 12.2 2.7 1 1 7.5e-06 0.045 12.2 2.7 511 553 7 49 1 50 0.79 SGT1 protein PG_binding_4 PF12229.8 114 pCP018901_00017 - 50 0.057 13.7 1.0 1 1 1.1e-05 0.065 13.5 1.0 42 79 10 48 2 50 0.81 Putative peptidoglycan binding domain DUF2175 PF09943.9 98 pCP018901_00017 - 50 0.077 13.3 1.2 1 1 1.4e-05 0.082 13.2 1.2 60 89 9 38 2 47 0.83 Uncharacterized protein conserved in archaea (DUF2175) DUF5309 PF17236.2 280 pCP018901_00018 - 81 3.1e-05 23.5 0.5 1 1 1.8e-09 3.3e-05 23.4 0.5 4 53 24 74 21 81 0.82 Family of unknown function (DUF5309) HicA_toxin PF07927.12 58 pCP018901_00019 - 75 1.7e-06 28.0 0.0 1 1 1.4e-10 2.5e-06 27.4 0.0 5 55 24 71 20 72 0.88 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pCP018901_00020 - 119 8.3e-09 35.6 0.3 1 2 4.2e-06 0.038 14.1 0.0 1 60 12 74 12 79 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 pCP018901_00020 - 119 8.3e-09 35.6 0.3 2 2 3.9e-08 0.00035 20.7 0.1 88 123 77 108 72 108 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 pCP018901_00020 - 119 0.15 11.9 0.0 1 1 3.3e-05 0.29 11.0 0.0 3 35 80 112 79 115 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 ParE_toxin PF05016.15 90 pCP018901_00022 - 93 1.1e-07 32.4 0.1 1 1 6.6e-12 1.2e-07 32.3 0.1 4 82 6 85 3 89 0.87 ParE toxin of type II toxin-antitoxin system, parDE YafQ_toxin PF15738.5 88 pCP018901_00024 - 91 8.9e-29 99.7 1.1 1 1 5.4e-33 9.7e-29 99.5 1.1 2 88 3 89 2 89 0.98 Bacterial toxin of type II toxin-antitoxin system, YafQ DUF4131 PF13567.6 167 pCP018901_00025 - 106 0.0008 19.1 0.1 1 1 2.8e-07 0.001 18.8 0.1 3 83 19 97 17 100 0.70 Domain of unknown function (DUF4131) DUF981 PF06168.11 187 pCP018901_00025 - 106 0.015 15.2 3.3 1 1 5.2e-06 0.019 14.9 3.3 119 175 9 66 4 73 0.87 Protein of unknown function (DUF981) Wzy_C PF04932.15 155 pCP018901_00025 - 106 0.056 13.1 1.3 1 1 1.8e-05 0.064 12.9 1.3 19 65 24 71 19 96 0.81 O-Antigen ligase DUF2663 PF10864.8 127 pCP018901_00025 - 106 0.13 12.7 2.1 1 1 4.5e-05 0.16 12.4 2.1 8 80 9 81 2 86 0.58 Protein of unknown function (DUF2663) DUF2721 PF11026.8 129 pCP018901_00025 - 106 0.27 11.1 5.3 1 1 9.5e-05 0.34 10.8 5.3 59 118 12 66 3 69 0.85 Protein of unknown function (DUF2721) TraG_N PF07916.11 467 pCP018901_00026 - 900 8.5e-39 133.7 20.1 1 4 4.8e-43 8.5e-39 133.7 20.1 38 465 23 446 1 452 0.77 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pCP018901_00026 - 900 8.5e-39 133.7 20.1 2 4 0.093 1.7e+03 -2.5 0.9 267 318 538 590 504 606 0.53 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pCP018901_00026 - 900 8.5e-39 133.7 20.1 3 4 0.15 2.7e+03 -3.1 3.1 246 307 686 745 646 776 0.48 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pCP018901_00026 - 900 8.5e-39 133.7 20.1 4 4 0.66 1.2e+04 -5.3 6.2 229 319 809 885 798 899 0.45 TraG-like protein, N-terminal region Glyco_tranf_2_5 PF13712.6 210 pCP018901_00027 - 267 0.00068 19.4 3.8 1 1 7.1e-08 0.0013 18.5 3.8 4 77 114 190 111 198 0.85 Glycosyltransferase like family UvrA_DNA-bind PF17755.1 110 pCP018901_00028 - 422 0.00087 19.6 0.5 1 2 1.8e-05 0.32 11.4 0.1 24 65 32 73 19 86 0.82 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pCP018901_00028 - 422 0.00087 19.6 0.5 2 2 0.00078 14 6.1 0.0 15 33 92 109 88 127 0.77 UvrA DNA-binding domain SseC PF04888.12 317 pCP018901_00030 - 1310 0.0051 16.5 0.2 1 1 3e-06 0.014 15.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family ThrE PF06738.12 241 pCP018901_00030 - 1310 0.014 14.8 0.8 1 1 7.8e-06 0.035 13.5 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter APOBEC_C PF05240.14 78 pCP018901_00030 - 1310 0.018 15.0 0.5 1 1 2e-05 0.091 12.7 0.5 26 76 766 819 755 821 0.86 APOBEC-like C-terminal domain Hormone_2 PF00123.20 28 pCP018901_00030 - 1310 0.035 14.0 0.1 1 1 3.5e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone Phage_lysozyme PF00959.19 109 pCP018901_00032 - 632 1.2e-10 41.8 1.2 1 2 0.95 8.5e+03 -2.8 0.1 17 37 323 343 306 360 0.73 Phage lysozyme Phage_lysozyme PF00959.19 109 pCP018901_00032 - 632 1.2e-10 41.8 1.2 2 2 2.2e-14 1.9e-10 41.1 0.1 3 108 521 630 519 631 0.86 Phage lysozyme Vta1 PF04652.16 145 pCP018901_00032 - 632 2.2 8.3 10.2 1 4 0.44 4e+03 -2.3 0.1 116 137 148 170 139 173 0.79 Vta1 like Vta1 PF04652.16 145 pCP018901_00032 - 632 2.2 8.3 10.2 2 4 0.15 1.4e+03 -0.8 0.2 29 61 317 357 312 369 0.69 Vta1 like Vta1 PF04652.16 145 pCP018901_00032 - 632 2.2 8.3 10.2 3 4 6e-06 0.054 13.5 1.0 8 80 392 468 384 481 0.81 Vta1 like Vta1 PF04652.16 145 pCP018901_00032 - 632 2.2 8.3 10.2 4 4 0.19 1.7e+03 -1.1 0.0 21 58 464 501 463 516 0.80 Vta1 like DUF2974 PF11187.8 224 pCP018901_00033 - 511 1.4e-06 28.0 0.0 1 1 1.5e-09 3.4e-06 26.8 0.0 6 109 79 192 75 260 0.72 Protein of unknown function (DUF2974) Lipase_3 PF01764.25 142 pCP018901_00033 - 511 1e-05 25.4 0.0 1 1 2.1e-08 4.6e-05 23.3 0.0 45 107 148 218 108 243 0.78 Lipase (class 3) DUF676 PF05057.14 219 pCP018901_00033 - 511 0.0019 17.7 0.0 1 1 2.1e-06 0.0046 16.5 0.0 70 116 158 205 129 247 0.73 Putative serine esterase (DUF676) PGAP1 PF07819.13 231 pCP018901_00033 - 511 0.0036 17.0 0.1 1 2 5e-05 0.11 12.2 0.0 69 116 148 193 144 201 0.76 PGAP1-like protein PGAP1 PF07819.13 231 pCP018901_00033 - 511 0.0036 17.0 0.1 2 2 0.06 1.4e+02 2.1 0.2 27 83 269 326 247 340 0.76 PGAP1-like protein DUF4450 PF14614.6 217 pCP018901_00033 - 511 0.016 14.8 0.2 1 2 2.9 6.5e+03 -3.5 0.0 156 173 340 357 330 359 0.71 Domain of unknown function (DUF4450) DUF4450 PF14614.6 217 pCP018901_00033 - 511 0.016 14.8 0.2 2 2 2.1e-05 0.047 13.3 0.1 6 48 446 488 443 495 0.94 Domain of unknown function (DUF4450) UPF0227 PF05728.12 187 pCP018901_00033 - 511 0.028 14.4 0.1 1 2 9.1e-05 0.2 11.6 0.0 48 80 157 189 133 196 0.80 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pCP018901_00033 - 511 0.028 14.4 0.1 2 2 0.39 8.7e+02 -0.3 0.0 115 145 391 422 368 439 0.73 Uncharacterised protein family (UPF0227) PAF-AH_p_II PF03403.13 379 pCP018901_00033 - 511 0.028 13.0 0.0 1 1 2.2e-05 0.05 12.1 0.0 185 244 120 184 94 210 0.77 Platelet-activating factor acetylhydrolase, isoform II Abhydrolase_6 PF12697.7 220 pCP018901_00033 - 511 0.049 14.2 0.0 1 1 3.1e-05 0.069 13.7 0.0 49 86 148 189 103 236 0.62 Alpha/beta hydrolase family DUF2974 PF11187.8 224 pCP018901_00034 - 215 0.0024 17.4 0.1 1 2 0.39 2.3e+03 -2.1 0.0 137 159 74 98 58 101 0.68 Protein of unknown function (DUF2974) DUF2974 PF11187.8 224 pCP018901_00034 - 215 0.0024 17.4 0.1 2 2 1.2e-06 0.007 16.0 0.0 20 94 131 209 117 211 0.77 Protein of unknown function (DUF2974) DUF676 PF05057.14 219 pCP018901_00034 - 215 0.05 13.1 0.0 1 1 1.6e-05 0.096 12.2 0.0 63 91 183 211 143 213 0.73 Putative serine esterase (DUF676) Lipase_3 PF01764.25 142 pCP018901_00034 - 215 0.11 12.3 0.1 1 1 7.3e-05 0.44 10.4 0.1 50 75 185 209 159 210 0.80 Lipase (class 3) DUF3810 PF12725.7 310 pCP018901_00035 - 212 0.0026 17.2 5.2 1 1 6.4e-07 0.0029 17.0 5.2 20 117 9 106 1 185 0.59 Protein of unknown function (DUF3810) CitMHS PF03600.16 300 pCP018901_00035 - 212 0.023 13.9 0.3 1 1 5.2e-06 0.023 13.9 0.3 147 221 4 67 1 158 0.80 Citrate transporter Yip1 PF04893.17 172 pCP018901_00035 - 212 0.11 12.2 5.7 1 1 3.5e-05 0.16 11.7 5.7 64 120 6 68 2 76 0.85 Yip1 domain Spo7 PF03907.13 221 pCP018901_00035 - 212 1.8 7.9 10.7 1 1 0.0009 4.1 6.8 10.3 33 92 16 70 12 176 0.75 Spo7-like protein Lipase_3 PF01764.25 142 pCP018901_00038 - 245 1.5e-08 34.6 0.0 1 1 3.1e-11 5e-08 32.9 0.0 50 113 176 240 139 243 0.77 Lipase (class 3) DUF2974 PF11187.8 224 pCP018901_00038 - 245 3.1e-08 33.4 0.0 1 1 3.1e-11 5e-08 32.8 0.0 7 123 100 233 95 236 0.71 Protein of unknown function (DUF2974) DUF676 PF05057.14 219 pCP018901_00038 - 245 1.1e-05 25.0 0.1 1 1 1.4e-08 2.3e-05 24.0 0.1 63 117 174 227 168 235 0.71 Putative serine esterase (DUF676) PGAP1 PF07819.13 231 pCP018901_00038 - 245 5.6e-05 23.0 0.1 1 1 5.9e-08 9.7e-05 22.2 0.1 46 114 128 213 98 235 0.75 PGAP1-like protein LIDHydrolase PF10230.9 266 pCP018901_00038 - 245 0.00041 20.0 0.1 1 1 3.9e-07 0.00064 19.3 0.1 67 101 173 206 133 218 0.72 Lipid-droplet associated hydrolase Abhydrolase_6 PF12697.7 220 pCP018901_00038 - 245 0.00064 20.4 0.0 1 1 5.3e-07 0.00086 20.0 0.0 51 86 175 211 138 241 0.75 Alpha/beta hydrolase family UPF0227 PF05728.12 187 pCP018901_00038 - 245 0.0014 18.6 0.3 1 2 1.3 2.1e+03 -1.5 0.1 115 148 46 79 32 96 0.58 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pCP018901_00038 - 245 0.0014 18.6 0.3 2 2 2.2e-06 0.0036 17.3 0.0 24 80 154 211 143 227 0.68 Uncharacterised protein family (UPF0227) Palm_thioest PF02089.15 242 pCP018901_00038 - 245 0.014 15.3 1.8 1 2 0.44 7.2e+02 -0.2 0.5 152 206 29 91 18 115 0.65 Palmitoyl protein thioesterase Palm_thioest PF02089.15 242 pCP018901_00038 - 245 0.014 15.3 1.8 2 2 1.6e-05 0.027 14.3 0.0 30 88 158 212 137 231 0.74 Palmitoyl protein thioesterase NMT PF01233.19 160 pCP018901_00038 - 245 0.079 12.8 0.2 1 1 7e-05 0.11 12.3 0.2 28 123 90 188 62 195 0.79 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain Hydrolase_4 PF12146.8 239 pCP018901_00038 - 245 0.17 11.2 0.0 1 1 0.00017 0.28 10.4 0.0 65 94 181 208 169 224 0.67 Serine aminopeptidase, S33 Ser_hydrolase PF06821.13 171 pCP018901_00038 - 245 0.17 11.7 0.0 1 1 0.00017 0.28 11.0 0.0 6 71 141 206 138 219 0.80 Serine hydrolase Put_DNA-bind_N PF06971.13 49 pCP018901_00042 - 155 0.039 14.0 0.0 1 1 7.5e-06 0.067 13.2 0.0 11 34 4 27 3 30 0.94 Putative DNA-binding protein N-terminus ATG27 PF09451.10 264 pCP018901_00042 - 155 0.071 13.0 0.6 1 1 1.4e-05 0.12 12.2 0.6 188 227 16 55 7 61 0.79 Autophagy-related protein 27 Toprim_3 PF13362.6 95 pCP018901_00044 - 409 2.4e-08 34.2 0.1 1 2 1.4 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pCP018901_00044 - 409 2.4e-08 34.2 0.1 2 2 1.4e-11 6.4e-08 32.9 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pCP018901_00044 - 409 0.017 15.4 0.2 1 2 0.024 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pCP018901_00044 - 409 0.017 15.4 0.2 2 2 0.00027 1.2 9.4 0.0 15 83 283 359 277 382 0.82 Retrotransposon gag protein DUF2315 PF10231.9 123 pCP018901_00044 - 409 0.023 14.8 6.8 1 3 0.00028 1.3 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP018901_00044 - 409 0.023 14.8 6.8 2 3 0.0016 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 pCP018901_00044 - 409 0.023 14.8 6.8 3 3 1.3 5.9e+03 -2.7 0.0 20 90 355 373 339 384 0.54 Apoptogenic protein 1 5_3_exonuc PF01367.20 97 pCP018901_00044 - 409 0.25 12.0 1.7 1 2 0.62 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP018901_00044 - 409 0.25 12.0 1.7 2 2 0.00012 0.53 10.9 0.2 15 81 322 384 321 401 0.72 5'-3' exonuclease, C-terminal SAM fold Abi_2 PF07751.11 179 pCP018901_00045 - 225 0.0013 19.1 11.1 1 1 1.1e-07 0.002 18.4 11.1 41 177 29 176 3 178 0.66 Abi-like protein NYN PF01936.18 147 pCP018901_00046 - 180 1.7e-10 41.6 0.0 1 1 3.1e-14 1.9e-10 41.4 0.0 60 123 74 146 15 161 0.80 NYN domain Peroxin-22 PF12827.7 113 pCP018901_00046 - 180 0.0082 16.0 0.7 1 1 2.7e-06 0.016 15.1 0.7 25 105 81 162 46 169 0.76 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 pCP018901_00046 - 180 0.02 15.5 0.0 1 1 5.8e-06 0.035 14.8 0.0 57 103 99 142 77 142 0.88 PIN domain RHH_7 PF16777.5 74 pCP018901_00047 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 pCP018901_00047 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal AAA_31 PF13614.6 177 pCP018901_00048 - 186 6.9e-05 22.8 0.5 1 2 2.1e-07 0.00093 19.2 0.1 3 26 2 25 1 31 0.91 AAA domain AAA_31 PF13614.6 177 pCP018901_00048 - 186 6.9e-05 22.8 0.5 2 2 0.04 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pCP018901_00048 - 186 0.001 19.1 0.5 1 1 1.9e-06 0.0086 16.1 0.5 1 55 3 89 3 167 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP018901_00048 - 186 0.014 14.8 0.0 1 1 4.2e-06 0.019 14.4 0.0 17 109 69 171 61 180 0.77 short chain dehydrogenase ParA PF10609.9 246 pCP018901_00048 - 186 0.17 11.3 0.0 1 1 5.9e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase DUF4223 PF13978.6 54 pCP018901_00049 - 78 0.21 11.6 1.5 1 1 2e-05 0.36 10.8 1.5 1 26 1 27 1 41 0.79 Protein of unknown function (DUF4223) ZapB PF06005.12 71 pCP018901_00050 - 32 0.094 13.2 0.1 1 1 5.3e-06 0.095 13.2 0.1 1 22 1 22 1 28 0.94 Cell division protein ZapB DUF1451 PF07295.11 147 pCP018901_00051 - 67 0.00056 20.0 0.0 1 1 3.5e-08 0.00063 19.8 0.0 107 137 9 39 2 44 0.88 Zinc-ribbon containing domain DUF4145 PF13643.6 88 pCP018901_00052 - 207 8.2e-17 61.1 3.4 1 2 8.1e-20 1.4e-15 57.1 0.1 1 76 87 161 87 172 0.91 Domain of unknown function (DUF4145) DUF4145 PF13643.6 88 pCP018901_00052 - 207 8.2e-17 61.1 3.4 2 2 0.0019 34 4.7 0.6 21 52 177 203 161 207 0.77 Domain of unknown function (DUF4145) HicB_lk_antitox PF15919.5 123 pCP018901_00054 - 72 1.8e-08 34.5 0.0 1 1 2.3e-12 2e-08 34.4 0.0 3 60 5 61 3 68 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 pCP018901_00054 - 72 0.075 12.4 0.0 1 1 9.1e-06 0.082 12.3 0.0 12 61 21 70 15 72 0.94 IRSp53/MIM homology domain HicA_toxin PF07927.12 58 pCP018901_00055 - 67 6.2e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pCP018901_00056 - 599 1.7e-15 57.2 0.0 1 1 1.6e-18 3.5e-15 56.1 0.0 30 193 30 175 23 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP018901_00056 - 599 0.00066 19.1 0.0 1 2 3.2e-06 0.0072 15.7 0.0 16 109 30 128 25 134 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP018901_00056 - 599 0.00066 19.1 0.0 2 2 0.016 36 3.6 0.0 121 183 112 176 96 180 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP018901_00056 - 599 0.0016 18.2 0.0 1 2 1.1e-05 0.025 14.3 0.0 46 85 32 71 23 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP018901_00056 - 599 0.0016 18.2 0.0 2 2 0.17 3.7e+02 0.7 0.0 96 118 108 130 98 169 0.74 IstB-like ATP binding protein AAA_24 PF13479.6 197 pCP018901_00056 - 599 0.0031 17.3 0.0 1 1 2.9e-06 0.0066 16.2 0.0 5 122 36 172 32 206 0.73 AAA domain ATPase PF06745.13 231 pCP018901_00056 - 599 0.0057 16.0 0.1 1 2 2e-05 0.044 13.1 0.0 16 71 30 84 25 214 0.73 KaiC ATPase PF06745.13 231 pCP018901_00056 - 599 0.0057 16.0 0.1 2 2 0.74 1.7e+03 -1.9 0.0 137 160 329 352 322 358 0.84 KaiC AAA PF00004.29 132 pCP018901_00056 - 599 0.07 13.6 0.7 1 3 0.0004 0.9 10.0 0.0 2 105 37 166 36 177 0.58 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP018901_00056 - 599 0.07 13.6 0.7 2 3 0.41 9.1e+02 0.2 0.0 57 74 417 436 383 456 0.76 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP018901_00056 - 599 0.07 13.6 0.7 3 3 4 9e+03 -3.0 0.0 23 49 497 525 477 529 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pCP018901_00056 - 599 0.16 12.0 1.2 1 1 0.00026 0.59 10.2 1.2 1 29 35 63 35 550 0.93 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1947 PF09183.10 66 pCP018901_00056 - 599 0.7 10.2 6.3 1 2 0.14 3e+02 1.8 0.2 23 46 245 269 237 271 0.78 Domain of unknown function (DUF1947) DUF1947 PF09183.10 66 pCP018901_00056 - 599 0.7 10.2 6.3 2 2 0.00076 1.7 9.0 1.7 7 42 519 552 517 569 0.87 Domain of unknown function (DUF1947) RHH_7 PF16777.5 74 pCP018901_00057 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 pCP018901_00057 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal AAA_31 PF13614.6 177 pCP018901_00058 - 186 6.9e-05 22.8 0.5 1 2 2.1e-07 0.00093 19.2 0.1 3 26 2 25 1 31 0.91 AAA domain AAA_31 PF13614.6 177 pCP018901_00058 - 186 6.9e-05 22.8 0.5 2 2 0.04 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pCP018901_00058 - 186 0.001 19.1 0.5 1 1 1.9e-06 0.0086 16.1 0.5 1 55 3 89 3 167 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP018901_00058 - 186 0.014 14.8 0.0 1 1 4.2e-06 0.019 14.4 0.0 17 109 69 171 61 180 0.77 short chain dehydrogenase ParA PF10609.9 246 pCP018901_00058 - 186 0.17 11.3 0.0 1 1 5.9e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase DUF4995 PF16386.5 73 pCP018901_00059 - 66 0.14 12.2 0.7 1 1 1.7e-05 0.15 12.1 0.7 6 38 8 43 1 65 0.73 Domain of unknown function DUF4223 PF13978.6 54 pCP018901_00059 - 66 0.2 11.6 1.9 1 1 3.1e-05 0.28 11.2 1.9 1 26 1 27 1 55 0.84 Protein of unknown function (DUF4223) CitMHS PF03600.16 300 pCP018901_00064 - 200 0.0018 17.5 0.1 1 1 6e-07 0.0018 17.5 0.1 147 214 4 101 1 166 0.82 Citrate transporter DUF3810 PF12725.7 310 pCP018901_00064 - 200 0.0049 16.3 5.3 1 1 1.9e-06 0.0058 16.0 5.3 19 89 8 80 1 164 0.59 Protein of unknown function (DUF3810) Yip1 PF04893.17 172 pCP018901_00064 - 200 0.24 11.1 5.6 1 1 0.00012 0.37 10.5 5.6 66 120 8 68 2 76 0.77 Yip1 domain Ion_trans PF00520.31 245 pCP018901_00064 - 200 1.4 8.1 14.4 1 1 0.00058 1.7 7.8 14.4 127 183 5 52 1 170 0.81 Ion transport protein DHHC PF01529.20 134 pCP018901_00064 - 200 1.8 8.6 10.9 1 1 0.001 3.1 7.9 10.9 47 112 7 69 3 101 0.70 DHHC palmitoyltransferase Spo7 PF03907.13 221 pCP018901_00064 - 200 2.8 7.4 6.8 1 1 0.0019 5.6 6.4 6.8 33 91 16 69 7 76 0.84 Spo7-like protein CitMHS PF03600.16 300 pCP018901_00066 - 208 0.0033 16.7 0.5 1 1 1.3e-06 0.0039 16.4 0.5 147 214 4 101 1 114 0.81 Citrate transporter Yip1 PF04893.17 172 pCP018901_00066 - 208 0.4 10.4 6.1 1 1 0.00019 0.57 9.9 6.1 66 120 8 68 2 75 0.77 Yip1 domain DUF3810 PF12725.7 310 pCP018901_00066 - 208 0.43 9.9 11.7 1 1 0.00018 0.55 9.5 11.6 19 85 8 74 1 173 0.61 Protein of unknown function (DUF3810) Ion_trans PF00520.31 245 pCP018901_00066 - 208 0.5 9.5 12.3 1 1 0.00026 0.78 8.9 12.2 127 183 5 52 1 85 0.78 Ion transport protein Spo7 PF03907.13 221 pCP018901_00066 - 208 2.2 7.7 7.5 1 1 0.0012 3.7 7.0 7.5 33 93 16 71 12 178 0.72 Spo7-like protein DHHC PF01529.20 134 pCP018901_00066 - 208 3.4 7.8 11.8 1 1 0.0021 6.4 6.9 11.8 47 112 7 69 3 96 0.68 DHHC palmitoyltransferase Phage_lysozyme PF00959.19 109 pCP018901_00067 - 1405 2.1e-10 41.0 2.1 1 2 1.3 4.8e+03 -2.0 0.2 25 64 689 732 680 751 0.61 Phage lysozyme Phage_lysozyme PF00959.19 109 pCP018901_00067 - 1405 2.1e-10 41.0 2.1 2 2 1.7e-13 6e-10 39.6 0.1 3 108 1294 1403 1292 1404 0.86 Phage lysozyme Lipase_3 PF01764.25 142 pCP018901_00067 - 1405 2.8e-07 30.5 0.0 1 1 2.8e-10 1e-06 28.7 0.0 39 105 191 251 158 267 0.71 Lipase (class 3) PGAP1 PF07819.13 231 pCP018901_00067 - 1405 0.00084 19.1 2.0 1 3 8.3e-07 0.003 17.3 0.0 64 133 190 256 145 317 0.76 PGAP1-like protein PGAP1 PF07819.13 231 pCP018901_00067 - 1405 0.00084 19.1 2.0 2 3 1.1 3.8e+03 -2.7 0.7 50 95 541 581 508 582 0.68 PGAP1-like protein PGAP1 PF07819.13 231 pCP018901_00067 - 1405 0.00084 19.1 2.0 3 3 0.31 1.1e+03 -0.9 0.0 164 192 1000 1028 989 1049 0.80 PGAP1-like protein Abhydrolase_6 PF12697.7 220 pCP018901_00067 - 1405 0.096 13.3 0.0 1 1 4.2e-05 0.15 12.6 0.0 62 86 203 230 164 263 0.74 Alpha/beta hydrolase family Thioesterase PF00975.20 231 pCP018901_00067 - 1405 0.2 11.8 0.0 1 1 0.00014 0.51 10.4 0.0 59 94 205 242 184 260 0.71 Thioesterase domain SseC PF04888.12 317 pCP018901_00069 - 1312 0.014 15.1 0.2 1 2 3e-06 0.014 15.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family SseC PF04888.12 317 pCP018901_00069 - 1312 0.014 15.1 0.2 2 2 1.7 7.7e+03 -3.8 3.6 23 55 1260 1290 1243 1291 0.72 Secretion system effector C (SseC) like family ThrE PF06738.12 241 pCP018901_00069 - 1312 0.014 14.8 0.8 1 1 7.8e-06 0.035 13.5 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter APOBEC_C PF05240.14 78 pCP018901_00069 - 1312 0.018 15.0 0.5 1 1 2e-05 0.091 12.7 0.5 26 76 766 819 755 821 0.86 APOBEC-like C-terminal domain Hormone_2 PF00123.20 28 pCP018901_00069 - 1312 0.035 14.0 0.1 1 1 3.5e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone UvrA_DNA-bind PF17755.1 110 pCP018901_00070 - 426 0.0051 17.1 0.3 1 3 0.00018 3.2 8.1 0.0 24 65 36 77 30 90 0.84 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pCP018901_00070 - 426 0.0051 17.1 0.3 2 3 0.00088 16 5.9 0.0 15 33 96 113 92 129 0.75 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pCP018901_00070 - 426 0.0051 17.1 0.3 3 3 0.29 5.3e+03 -2.2 0.0 77 97 316 336 306 338 0.82 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pCP018901_00071 - 428 0.013 15.8 0.2 1 2 0.00038 6.8 7.1 0.1 24 57 32 65 19 83 0.84 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pCP018901_00071 - 428 0.013 15.8 0.2 2 2 0.00081 14 6.0 0.0 15 33 92 109 88 133 0.78 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pCP018901_00073 - 433 0.025 14.9 0.6 1 3 0.0012 11 6.4 0.1 25 57 38 70 31 88 0.85 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pCP018901_00073 - 433 0.025 14.9 0.6 2 3 0.0016 15 6.0 0.0 15 33 97 114 93 138 0.78 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pCP018901_00073 - 433 0.025 14.9 0.6 3 3 1.6 1.4e+04 -3.6 0.0 68 90 317 340 295 343 0.63 UvrA DNA-binding domain DUF3870 PF12986.7 94 pCP018901_00073 - 433 0.11 12.8 0.0 1 1 2.7e-05 0.24 11.6 0.0 11 62 4 58 1 70 0.79 Domain of unknown function (DUF3870) FHA PF00498.26 69 pCP018901_00074 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 pCP018901_00074 - 299 0.0007 19.9 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 pCP018901_00074 - 299 0.0007 19.9 0.0 2 2 0.23 1.4e+03 -0.3 0.0 31 57 199 225 198 231 0.89 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 pCP018901_00074 - 299 0.05 14.0 3.1 1 2 0.044 2.6e+02 2.1 0.1 18 58 107 147 105 150 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 pCP018901_00074 - 299 0.05 14.0 3.1 2 2 7.4e-05 0.44 11.0 0.9 21 82 151 212 146 218 0.92 Ferredoxin-fold anticodon binding domain ImcF-related_N PF14331.6 259 pCP018901_00075 - 1175 6.2e-41 140.5 0.0 1 1 4.1e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 pCP018901_00075 - 1175 5.9e-40 137.0 0.5 1 1 4.1e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 pCP018901_00075 - 1175 8.2e-27 94.5 2.1 1 1 4.9e-30 1.3e-26 93.9 2.1 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 pCP018901_00075 - 1175 0.0003 20.7 0.0 1 2 8.9e-06 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 pCP018901_00075 - 1175 0.0003 20.7 0.0 2 2 0.047 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 pCP018901_00075 - 1175 0.0011 19.0 0.1 1 2 1.7e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 pCP018901_00075 - 1175 0.0011 19.0 0.1 2 2 4.1 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 pCP018901_00075 - 1175 0.0033 17.1 5.0 1 3 1.4e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 pCP018901_00075 - 1175 0.0033 17.1 5.0 2 3 0.078 2e+02 1.5 0.0 41 78 451 488 431 588 0.81 O-Antigen ligase Wzy_C PF04932.15 155 pCP018901_00075 - 1175 0.0033 17.1 5.0 3 3 0.076 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 pCP018901_00075 - 1175 0.055 13.2 0.1 1 2 0.00017 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pCP018901_00075 - 1175 0.055 13.2 0.1 2 2 0.72 1.8e+03 -1.3 0.0 22 37 841 856 831 873 0.75 P-loop containing region of AAA domain T6SS_HCP PF05638.12 129 pCP018901_00076 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp DotU PF09850.9 205 pCP018901_00077 - 257 3.6e-35 121.5 0.0 1 1 2.3e-39 4.2e-35 121.4 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_VasE PF05936.12 428 pCP018901_00078 - 465 1.3e-112 376.6 0.0 1 1 8.6e-117 1.5e-112 376.4 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE T6SS-SciN PF12790.7 120 pCP018901_00079 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasJ PF16989.5 255 pCP018901_00080 - 415 1.2e-12 47.9 0.0 1 1 3.9e-16 1.7e-12 47.3 0.0 3 153 176 323 174 408 0.84 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 pCP018901_00080 - 415 0.00014 22.0 0.2 1 2 1.8e-07 0.0008 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 pCP018901_00080 - 415 0.00014 22.0 0.2 2 2 0.31 1.4e+03 -0.6 0.0 47 71 185 209 162 212 0.83 ImpA, N-terminal, type VI secretion system PX PF00787.24 113 pCP018901_00080 - 415 0.074 13.0 14.5 1 3 0.00025 1.1 9.2 2.4 31 111 33 130 20 131 0.67 PX domain PX PF00787.24 113 pCP018901_00080 - 415 0.074 13.0 14.5 2 3 0.00084 3.8 7.5 0.2 16 112 155 275 132 276 0.68 PX domain PX PF00787.24 113 pCP018901_00080 - 415 0.074 13.0 14.5 3 3 0.052 2.3e+02 1.8 0.7 22 97 316 396 296 404 0.70 PX domain TetR_C_24 PF17932.1 114 pCP018901_00080 - 415 0.19 12.0 0.0 1 1 8.8e-05 0.4 11.0 0.0 20 68 71 119 62 132 0.87 Tetracyclin repressor-like, C-terminal domain T6SS_VipA PF05591.12 155 pCP018901_00081 - 161 6.4e-52 175.5 3.9 1 1 8e-56 7.2e-52 175.3 3.9 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 pCP018901_00081 - 161 0.14 10.8 0.0 1 1 1.8e-05 0.16 10.5 0.0 171 227 55 111 40 127 0.90 Chitin synthase VipB PF05943.12 422 pCP018901_00082 - 484 7.4e-170 565.3 0.0 1 1 9.8e-174 8.7e-170 565.1 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 pCP018901_00082 - 484 0.33 11.0 2.6 1 4 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pCP018901_00082 - 484 0.33 11.0 2.6 2 4 1.5 1.4e+04 -3.9 0.0 103 117 130 143 127 147 0.66 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pCP018901_00082 - 484 0.33 11.0 2.6 3 4 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pCP018901_00082 - 484 0.33 11.0 2.6 4 4 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide GPW_gp25 PF04965.14 95 pCP018901_00083 - 130 1.2e-09 37.8 0.0 1 1 2.6e-13 1.5e-09 37.5 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 pCP018901_00083 - 130 0.0076 16.1 0.3 1 1 1.6e-06 0.0097 15.8 0.3 93 159 20 87 6 92 0.89 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 pCP018901_00083 - 130 0.051 13.0 0.1 1 2 2.1e-05 0.12 11.8 0.1 82 121 5 46 1 64 0.83 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 pCP018901_00083 - 130 0.051 13.0 0.1 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) T6SS_TssF PF05947.12 603 pCP018901_00084 - 573 2.3e-110 369.9 0.0 1 1 1.5e-114 2.6e-110 369.8 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF T6SS_TssG PF06996.11 299 pCP018901_00085 - 302 1.9e-47 161.9 0.0 1 1 1.2e-51 2.2e-47 161.8 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG Phage_GPD PF05954.11 304 pCP018901_00086 - 882 1.2e-17 64.2 0.0 1 1 5.4e-21 1.9e-17 63.5 0.0 23 281 74 360 45 376 0.74 Phage late control gene D protein (GPD) DUF2345 PF10106.9 151 pCP018901_00086 - 882 0.011 15.7 1.7 1 1 8.1e-06 0.029 14.2 1.7 28 132 775 874 772 878 0.84 Uncharacterized protein conserved in bacteria (DUF2345) Gp5_C PF06715.12 24 pCP018901_00086 - 882 0.013 15.6 4.6 1 4 5.3e-05 0.19 11.9 0.1 3 24 657 678 655 686 0.67 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pCP018901_00086 - 882 0.013 15.6 4.6 2 4 0.2 7.2e+02 0.7 0.0 13 24 731 742 730 742 0.89 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pCP018901_00086 - 882 0.013 15.6 4.6 3 4 0.61 2.2e+03 -0.8 0.0 1 18 742 760 742 761 0.83 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pCP018901_00086 - 882 0.013 15.6 4.6 4 4 0.22 7.8e+02 0.6 0.1 2 23 752 773 751 774 0.81 Gp5 C-terminal repeat (3 copies) DUF3540 PF12059.8 199 pCP018901_00086 - 882 0.1 12.4 0.8 1 2 0.25 9.1e+02 -0.5 0.0 31 45 534 548 532 555 0.80 Protein of unknown function (DUF3540) DUF3540 PF12059.8 199 pCP018901_00086 - 882 0.1 12.4 0.8 2 2 0.00012 0.45 10.3 0.2 60 128 783 850 777 861 0.85 Protein of unknown function (DUF3540) TCL1_MTCP1 PF01840.17 116 pCP018901_00086 - 882 0.1 12.2 0.0 1 2 0.053 1.9e+02 1.7 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 pCP018901_00086 - 882 0.1 12.2 0.0 2 2 0.00085 3 7.5 0.0 19 52 461 494 452 517 0.80 TCL1/MTCP1 family Ank_3 PF13606.6 31 pCP018901_00087 - 312 2.8e-10 39.5 0.1 1 4 0.017 63 4.6 0.0 8 26 73 93 71 97 0.83 Ankyrin repeat Ank_3 PF13606.6 31 pCP018901_00087 - 312 2.8e-10 39.5 0.1 2 4 0.025 88 4.2 0.0 10 29 142 160 132 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pCP018901_00087 - 312 2.8e-10 39.5 0.1 3 4 2.5e-07 0.00091 19.5 0.0 2 30 168 195 167 196 0.95 Ankyrin repeat Ank_3 PF13606.6 31 pCP018901_00087 - 312 2.8e-10 39.5 0.1 4 4 0.01 37 5.3 0.0 4 30 208 234 205 235 0.86 Ankyrin repeat Ank_2 PF12796.7 83 pCP018901_00087 - 312 3.8e-09 37.0 0.0 1 2 0.53 1.9e+03 -0.5 0.0 4 18 74 92 70 121 0.56 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pCP018901_00087 - 312 3.8e-09 37.0 0.0 2 2 7.2e-12 2.6e-08 34.3 0.0 5 80 142 234 138 237 0.79 Ankyrin repeats (3 copies) Ank_4 PF13637.6 55 pCP018901_00087 - 312 1.9e-05 25.1 0.0 1 3 1.3 4.7e+03 -1.6 0.0 10 21 76 89 67 99 0.55 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP018901_00087 - 312 1.9e-05 25.1 0.0 2 3 3e-07 0.0011 19.5 0.0 13 55 146 188 134 188 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP018901_00087 - 312 1.9e-05 25.1 0.0 3 3 0.11 3.9e+02 1.8 0.0 4 28 209 234 207 243 0.79 Ankyrin repeats (many copies) Ank PF00023.30 32 pCP018901_00087 - 312 7.3e-05 23.0 0.0 1 3 0.023 82 3.9 0.0 10 25 142 158 132 165 0.82 Ankyrin repeat Ank PF00023.30 32 pCP018901_00087 - 312 7.3e-05 23.0 0.0 2 3 0.00068 2.5 8.7 0.0 2 31 168 198 167 199 0.87 Ankyrin repeat Ank PF00023.30 32 pCP018901_00087 - 312 7.3e-05 23.0 0.0 3 3 0.0054 19 5.9 0.0 15 28 220 234 206 237 0.70 Ankyrin repeat Ank_5 PF13857.6 56 pCP018901_00087 - 312 0.0034 17.6 0.3 1 5 2.5 8.8e+03 -2.8 0.0 42 52 50 60 48 61 0.76 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP018901_00087 - 312 0.0034 17.6 0.3 2 5 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP018901_00087 - 312 0.0034 17.6 0.3 3 5 0.2 7.2e+02 0.7 0.0 23 41 141 159 139 166 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP018901_00087 - 312 0.0034 17.6 0.3 4 5 3.5e-05 0.13 12.7 0.0 9 48 162 200 153 202 0.83 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP018901_00087 - 312 0.0034 17.6 0.3 5 5 2.5 9.1e+03 -2.8 0.0 34 53 225 242 221 243 0.56 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 pCP018901_00088 - 592 6.6e-08 32.8 0.0 1 3 0.38 6.9e+03 -2.6 0.1 20 27 371 378 352 399 0.59 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pCP018901_00088 - 592 6.6e-08 32.8 0.0 2 3 3.7e-12 6.6e-08 32.8 0.0 13 84 410 483 391 485 0.81 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pCP018901_00088 - 592 6.6e-08 32.8 0.0 3 3 1 1.8e+04 -4.0 0.7 46 58 492 505 490 517 0.52 Restriction endonuclease fold toxin 7 Ank_2 PF12796.7 83 pCP018901_00089 - 304 1.3e-11 44.9 0.5 1 2 7e-08 0.00025 21.6 0.1 32 82 140 197 70 198 0.79 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pCP018901_00089 - 304 1.3e-11 44.9 0.5 2 2 3e-10 1.1e-06 29.1 0.1 5 80 142 235 137 238 0.79 Ankyrin repeats (3 copies) Ank_3 PF13606.6 31 pCP018901_00089 - 304 4.9e-10 38.8 0.4 1 4 0.015 53 4.9 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 pCP018901_00089 - 304 4.9e-10 38.8 0.4 2 4 0.024 85 4.2 0.0 10 29 142 160 132 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pCP018901_00089 - 304 4.9e-10 38.8 0.4 3 4 2.5e-06 0.0091 16.4 0.0 2 30 168 195 167 196 0.94 Ankyrin repeat Ank_3 PF13606.6 31 pCP018901_00089 - 304 4.9e-10 38.8 0.4 4 4 0.0018 6.3 7.7 0.0 1 30 206 235 206 236 0.92 Ankyrin repeat Ank_4 PF13637.6 55 pCP018901_00089 - 304 0.0015 19.1 0.1 1 4 0.81 2.9e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP018901_00089 - 304 0.0015 19.1 0.1 2 4 0.00017 0.6 10.8 0.0 13 55 146 188 134 188 0.78 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP018901_00089 - 304 0.0015 19.1 0.1 3 4 8.5e-05 0.31 11.7 0.0 2 55 169 228 168 228 0.84 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP018901_00089 - 304 0.0015 19.1 0.1 4 4 0.024 84 3.9 0.0 3 28 209 235 207 239 0.90 Ankyrin repeats (many copies) Ank PF00023.30 32 pCP018901_00089 - 304 0.0038 17.6 0.0 1 3 0.024 85 3.9 0.0 10 25 142 158 132 166 0.83 Ankyrin repeat Ank PF00023.30 32 pCP018901_00089 - 304 0.0038 17.6 0.0 2 3 0.03 1.1e+02 3.5 0.0 3 31 169 198 167 199 0.82 Ankyrin repeat Ank PF00023.30 32 pCP018901_00089 - 304 0.0038 17.6 0.0 3 3 0.0051 18 6.0 0.0 15 28 221 235 206 238 0.69 Ankyrin repeat Ank_5 PF13857.6 56 pCP018901_00089 - 304 0.023 15.0 0.1 1 3 0.59 2.1e+03 -0.8 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP018901_00089 - 304 0.023 15.0 0.1 2 3 0.00043 1.5 9.2 0.0 23 54 141 173 139 175 0.92 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP018901_00089 - 304 0.023 15.0 0.1 3 3 0.13 4.6e+02 1.3 0.0 15 29 179 193 173 210 0.76 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 pCP018901_00090 - 572 1.4e-07 31.7 4.9 1 3 0.36 3.2e+03 -1.5 1.2 37 64 337 365 334 372 0.73 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pCP018901_00090 - 572 1.4e-07 31.7 4.9 2 3 0.51 4.6e+03 -2.0 0.1 13 29 378 394 366 399 0.52 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pCP018901_00090 - 572 1.4e-07 31.7 4.9 3 3 1.8e-11 1.7e-07 31.5 0.0 13 84 421 494 402 496 0.81 Restriction endonuclease fold toxin 7 DUF2239 PF09998.9 184 pCP018901_00090 - 572 0.57 9.9 6.5 1 2 0.00018 1.6 8.5 0.6 23 71 46 92 38 103 0.74 Uncharacterized protein conserved in bacteria (DUF2239) DUF2239 PF09998.9 184 pCP018901_00090 - 572 0.57 9.9 6.5 2 2 0.0045 40 3.9 0.8 4 83 259 373 257 382 0.72 Uncharacterized protein conserved in bacteria (DUF2239) Ank_2 PF12796.7 83 pCP018901_00091 - 315 5.5e-13 49.3 0.5 1 2 2.7e-08 8.2e-05 23.1 0.1 27 82 132 199 71 200 0.70 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pCP018901_00091 - 315 5.5e-13 49.3 0.5 2 2 4.5e-11 1.3e-07 32.0 0.0 7 80 145 237 136 240 0.79 Ankyrin repeats (3 copies) Ank_3 PF13606.6 31 pCP018901_00091 - 315 5.8e-11 41.6 0.3 1 4 0.021 63 4.6 0.0 8 26 73 93 71 97 0.83 Ankyrin repeat Ank_3 PF13606.6 31 pCP018901_00091 - 315 5.8e-11 41.6 0.3 2 4 0.05 1.5e+02 3.5 0.0 12 29 145 161 135 163 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pCP018901_00091 - 315 5.8e-11 41.6 0.3 3 4 1.8e-07 0.00054 20.2 0.0 1 30 169 197 169 198 0.95 Ankyrin repeat Ank_3 PF13606.6 31 pCP018901_00091 - 315 5.8e-11 41.6 0.3 4 4 0.0022 6.6 7.7 0.0 1 30 208 237 208 238 0.92 Ankyrin repeat Ank PF00023.30 32 pCP018901_00091 - 315 1.9e-05 24.9 0.0 1 3 0.015 44 4.8 0.0 11 26 144 160 132 166 0.69 Ankyrin repeat Ank PF00023.30 32 pCP018901_00091 - 315 1.9e-05 24.9 0.0 2 3 0.00038 1.1 9.8 0.0 1 31 169 200 169 201 0.87 Ankyrin repeat Ank PF00023.30 32 pCP018901_00091 - 315 1.9e-05 24.9 0.0 3 3 0.0058 17 6.0 0.0 15 28 223 237 208 240 0.69 Ankyrin repeat Ank_4 PF13637.6 55 pCP018901_00091 - 315 6.7e-05 23.4 0.2 1 3 1.4 4.3e+03 -1.5 0.0 10 21 76 89 67 102 0.57 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP018901_00091 - 315 6.7e-05 23.4 0.2 2 3 6e-06 0.018 15.6 0.1 14 55 148 190 132 190 0.79 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pCP018901_00091 - 315 6.7e-05 23.4 0.2 3 3 0.027 80 4.0 0.0 3 28 211 237 193 239 0.86 Ankyrin repeats (many copies) FAM25 PF15825.5 65 pCP018901_00091 - 315 0.0037 17.6 1.6 1 2 0.0008 2.4 8.6 0.2 13 35 108 128 104 130 0.91 FAM25 family FAM25 PF15825.5 65 pCP018901_00091 - 315 0.0037 17.6 1.6 2 2 0.0022 6.4 7.2 0.1 19 35 299 315 291 315 0.82 FAM25 family Ank_5 PF13857.6 56 pCP018901_00091 - 315 0.028 14.7 0.1 1 4 3 8.9e+03 -2.8 0.0 42 52 50 60 48 61 0.76 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP018901_00091 - 315 0.028 14.7 0.1 2 4 0.67 2e+03 -0.7 0.0 26 42 79 96 73 99 0.80 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP018901_00091 - 315 0.028 14.7 0.1 3 4 0.14 4.3e+02 1.4 0.0 26 53 145 174 143 176 0.70 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pCP018901_00091 - 315 0.028 14.7 0.1 4 4 0.00028 0.82 10.1 0.0 2 46 155 200 154 211 0.77 Ankyrin repeats (many copies) TNT PF14021.6 88 pCP018901_00094 - 364 1.5e-15 57.5 0.0 1 2 6.2e-13 1.1e-08 35.5 0.0 1 53 238 298 238 304 0.87 Tuberculosis necrotizing toxin TNT PF14021.6 88 pCP018901_00094 - 364 1.5e-15 57.5 0.0 2 2 5.1e-08 0.00092 19.7 0.0 53 88 329 363 313 363 0.91 Tuberculosis necrotizing toxin LPD7 PF18821.1 94 pCP018901_00095 - 184 0.032 14.3 0.5 1 2 0.0043 39 4.5 0.1 30 80 55 110 19 121 0.62 Large polyvalent protein-associated domain 7 LPD7 PF18821.1 94 pCP018901_00095 - 184 0.032 14.3 0.5 2 2 0.00035 3.1 8.0 0.1 35 65 124 157 116 161 0.77 Large polyvalent protein-associated domain 7 Imm59 PF15597.6 100 pCP018901_00095 - 184 1.1 9.8 8.9 1 3 0.00016 1.5 9.4 2.6 28 74 25 73 21 94 0.85 Immunity protein 59 Imm59 PF15597.6 100 pCP018901_00095 - 184 1.1 9.8 8.9 2 3 0.033 3e+02 2.0 1.7 12 47 70 107 64 145 0.53 Immunity protein 59 Imm59 PF15597.6 100 pCP018901_00095 - 184 1.1 9.8 8.9 3 3 0.023 2.1e+02 2.5 0.7 41 62 124 149 90 183 0.64 Immunity protein 59 AHH PF14412.6 114 pCP018901_00096 - 258 1e-15 57.8 1.5 1 1 1.1e-19 2e-15 56.9 1.5 8 111 153 239 148 243 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH Ntox24 PF15529.6 97 pCP018901_00099 - 318 0.003 17.8 1.3 1 2 0.41 7.4e+03 -2.7 0.0 26 45 180 201 159 204 0.52 Bacterial toxin 24 Ntox24 PF15529.6 97 pCP018901_00099 - 318 0.003 17.8 1.3 2 2 2.7e-07 0.0048 17.2 0.3 5 93 228 301 223 305 0.76 Bacterial toxin 24 CobN-Mg_chel PF02514.16 1089 pCP018901_00100 - 128 0.16 9.7 0.0 1 1 1e-05 0.19 9.5 0.0 299 369 36 100 24 109 0.71 CobN/Magnesium Chelatase Imm59 PF15597.6 100 pCP018901_00101 - 185 0.054 14.0 8.6 1 2 6.5e-06 0.12 12.9 1.7 28 85 25 84 18 93 0.83 Immunity protein 59 Imm59 PF15597.6 100 pCP018901_00101 - 185 0.054 14.0 8.6 2 2 0.0019 34 5.0 1.5 6 86 87 176 83 184 0.65 Immunity protein 59 AHH PF14412.6 114 pCP018901_00102 - 258 5.7e-17 61.8 2.0 1 1 1.3e-20 1.1e-16 60.9 2.0 8 111 153 239 148 243 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH RRF PF01765.19 162 pCP018901_00102 - 258 0.25 11.3 7.2 1 2 1.5e-05 0.13 12.2 1.5 122 156 161 196 125 199 0.78 Ribosome recycling factor RRF PF01765.19 162 pCP018901_00102 - 258 0.25 11.3 7.2 2 2 0.018 1.6e+02 2.2 0.4 83 106 220 243 207 256 0.59 Ribosome recycling factor DUF4299 PF14132.6 301 pCP018901_00104 - 116 1.4e-08 34.5 0.1 1 1 1.8e-12 1.6e-08 34.3 0.1 189 300 12 110 5 111 0.87 Domain of unknown function (DUF4299) XPG_I PF00867.18 94 pCP018901_00104 - 116 0.12 12.7 0.0 1 1 1.7e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region Phage_GPD PF05954.11 304 pCP018901_00106 - 838 1.1e-17 64.3 0.0 1 1 1.9e-21 1.7e-17 63.7 0.0 23 281 74 360 45 376 0.74 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 pCP018901_00106 - 838 0.081 12.6 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 pCP018901_00106 - 838 0.081 12.6 0.0 2 2 0.00032 2.9 7.6 0.0 19 52 461 494 452 517 0.80 TCL1/MTCP1 family BaxI_1 PF12811.7 232 pCP018901_00108 - 203 0.28 10.7 13.0 1 1 4.8e-05 0.43 10.1 12.5 98 179 71 166 47 180 0.71 Bax inhibitor 1 like CrgA PF06781.12 88 pCP018901_00108 - 203 0.43 10.7 6.3 1 2 5.6e-05 0.5 10.5 4.6 35 84 77 130 70 132 0.74 Cell division protein CrgA CrgA PF06781.12 88 pCP018901_00108 - 203 0.43 10.7 6.3 2 2 0.52 4.6e+03 -2.3 0.0 31 45 158 172 143 184 0.54 Cell division protein CrgA Peripla_BP_2 PF01497.18 238 pCP018901_00109 - 118 0.017 14.7 0.0 1 1 2.4e-06 0.021 14.4 0.0 39 69 64 98 38 108 0.76 Periplasmic binding protein DUF2345 PF10106.9 151 pCP018901_00109 - 118 0.029 14.3 0.4 1 2 3e-05 0.27 11.1 0.1 86 144 18 74 15 81 0.81 Uncharacterized protein conserved in bacteria (DUF2345) DUF2345 PF10106.9 151 pCP018901_00109 - 118 0.029 14.3 0.4 2 2 0.012 1e+02 2.7 0.1 91 132 70 110 67 114 0.63 Uncharacterized protein conserved in bacteria (DUF2345) DZR PF12773.7 49 pCP018901_00113 - 114 0.039 14.0 0.3 1 1 9.1e-06 0.054 13.5 0.3 13 37 5 38 2 43 0.91 Double zinc ribbon DiS_P_DiS PF06750.13 84 pCP018901_00113 - 114 0.04 14.1 0.4 1 1 1.3e-05 0.077 13.1 0.4 29 72 6 49 2 59 0.83 Bacterial Peptidase A24 N-terminal domain zinc_ribbon_4 PF13717.6 36 pCP018901_00113 - 114 0.6 10.1 4.6 1 2 0.054 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP018901_00113 - 114 0.6 10.1 4.6 2 2 0.00011 0.64 10.0 0.4 3 14 30 41 29 45 0.88 zinc-ribbon domain Rapsyn_N PF10579.9 80 pCP018901_00114 - 358 0.12 12.5 1.2 1 2 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 pCP018901_00114 - 358 0.12 12.5 1.2 2 2 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region SprT-like PF10263.9 113 pCP018901_00116 - 424 0.056 13.3 0.1 1 1 1.5e-05 0.13 12.1 0.1 58 93 316 353 294 360 0.81 SprT-like family Peptidase_M78 PF06114.13 123 pCP018901_00116 - 424 0.077 12.9 0.1 1 1 2e-05 0.18 11.8 0.1 6 63 288 347 285 365 0.76 IrrE N-terminal-like domain Phage_integrase PF00589.22 172 pCP018901_00119 - 312 5.1e-24 85.0 0.5 1 1 2.8e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 pCP018901_00119 - 312 2.3e-05 24.6 3.9 1 3 1.4e-07 0.00043 20.5 1.9 1 79 16 99 16 99 0.88 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pCP018901_00119 - 312 2.3e-05 24.6 3.9 2 3 0.0015 4.4 7.7 0.0 13 35 80 102 76 109 0.89 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pCP018901_00119 - 312 2.3e-05 24.6 3.9 3 3 3.1 9.3e+03 -3.0 0.0 36 54 123 141 114 151 0.54 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP018901_00119 - 312 0.00011 22.4 4.6 1 3 3.8e-08 0.00011 22.4 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP018901_00119 - 312 0.00011 22.4 4.6 2 3 0.91 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pCP018901_00119 - 312 0.00011 22.4 4.6 3 3 1.8 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phyto-Amp PF15438.6 195 pCP018901_00119 - 312 0.0094 15.8 0.3 1 1 5.8e-06 0.017 14.9 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma YbjN PF10722.9 127 pCP018901_00119 - 312 0.011 15.8 0.3 1 2 0.00017 0.51 10.4 0.1 38 77 96 135 93 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 pCP018901_00119 - 312 0.011 15.8 0.3 2 2 0.04 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator Phage_int_SAM_3 PF14659.6 58 pCP018901_00119 - 312 0.028 14.7 3.2 1 1 3.6e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain FlaC_arch PF05377.11 55 pCP018901_00120 - 76 0.0083 16.5 2.3 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pCP018901_00120 - 76 0.0083 16.5 2.3 2 2 4.6e-07 0.0083 16.5 2.3 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) WGR PF05406.15 80 pCP018901_00121 - 75 2.4e-07 30.7 0.6 1 1 3.1e-11 2.7e-07 30.5 0.6 3 73 4 74 2 75 0.87 WGR domain Cadherin_pro PF08758.11 90 pCP018901_00121 - 75 0.017 15.3 0.0 1 1 2.3e-06 0.021 15.0 0.0 15 45 26 56 12 62 0.81 Cadherin prodomain like YafQ_toxin PF15738.5 88 pCP018901_00125 - 106 1.6e-26 92.4 3.7 1 1 4.7e-30 2.1e-26 92.0 3.7 1 87 20 106 20 106 0.95 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 pCP018901_00125 - 106 1.9e-06 28.4 0.6 1 1 4.9e-10 2.2e-06 28.2 0.6 6 89 23 105 18 106 0.80 ParE toxin of type II toxin-antitoxin system, parDE Ribosomal_S2 PF00318.20 215 pCP018901_00125 - 106 0.0042 16.3 0.9 1 1 1.2e-06 0.0053 16.0 0.9 98 164 27 94 21 99 0.83 Ribosomal protein S2 ParE-like_toxin PF15781.5 87 pCP018901_00125 - 106 0.017 15.1 1.6 1 1 7.8e-06 0.035 14.1 1.6 5 82 26 105 22 106 0.79 ParE-like toxin of type II bacterial toxin-antitoxin system CCDC-167 PF15188.6 84 pCP018901_00130 - 137 0.0044 17.3 0.4 1 1 8.6e-07 0.0077 16.6 0.4 37 79 77 119 21 120 0.77 Coiled-coil domain-containing protein 167 DUF3461 PF11944.8 125 pCP018901_00130 - 137 0.018 15.1 3.2 1 1 5.4e-06 0.049 13.8 3.2 23 124 7 100 2 101 0.82 Protein of unknown function (DUF3461) Sigma_reg_N PF13800.6 90 pCP018901_00131 - 37 0.13 12.6 0.3 1 1 7.1e-06 0.13 12.6 0.3 15 44 5 34 4 37 0.89 Sigma factor regulator N-terminal DUF5601 PF18151.1 65 pCP018901_00132 - 118 0.038 14.3 0.2 1 1 7e-06 0.063 13.6 0.2 14 55 5 47 1 48 0.88 Domain of unknown function (DUF5601) DUF1640 PF07798.11 175 pCP018901_00132 - 118 0.58 10.2 7.1 1 2 1.4e-05 0.12 12.4 2.4 52 100 26 77 9 86 0.83 Protein of unknown function (DUF1640) DUF1640 PF07798.11 175 pCP018901_00132 - 118 0.58 10.2 7.1 2 2 0.068 6.1e+02 0.3 0.3 148 169 82 103 74 110 0.65 Protein of unknown function (DUF1640) HTH_3 PF01381.22 55 pCP018901_00134 - 44 8.4e-07 29.0 0.0 1 1 1e-09 9.1e-07 28.9 0.0 1 33 9 41 9 44 0.95 Helix-turn-helix HTH_26 PF13443.6 63 pCP018901_00134 - 44 0.00022 21.6 0.0 1 1 2.7e-07 0.00024 21.4 0.0 2 34 9 41 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 pCP018901_00134 - 44 0.0007 19.1 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding HTH_19 PF12844.7 65 pCP018901_00134 - 44 0.0012 18.8 0.0 1 1 1.4e-06 0.0013 18.8 0.0 4 37 9 42 7 44 0.91 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 pCP018901_00134 - 44 0.002 18.0 0.1 1 1 2.6e-06 0.0023 17.7 0.1 1 32 9 41 9 43 0.84 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 pCP018901_00134 - 44 0.002 17.9 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 pCP018901_00134 - 44 0.0035 17.4 0.3 1 1 5.7e-06 0.0052 16.8 0.3 25 46 1 22 1 41 0.89 ENT domain HTH_31 PF13560.6 64 pCP018901_00134 - 44 0.0089 16.4 0.0 1 1 1.2e-05 0.011 16.1 0.0 12 38 15 41 9 43 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 pCP018901_00134 - 44 0.009 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 pCP018901_00134 - 44 0.0098 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 pCP018901_00134 - 44 0.013 14.9 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 pCP018901_00134 - 44 0.019 14.9 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 pCP018901_00134 - 44 0.02 14.7 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain HTH_AsnC-type PF13404.6 42 pCP018901_00134 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain Phage_CI_repr PF07022.13 65 pCP018901_00134 - 44 0.03 14.4 0.0 1 1 3.7e-05 0.033 14.3 0.0 3 33 9 38 7 41 0.84 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4 PF04545.16 50 pCP018901_00134 - 44 0.034 13.7 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 HTH_17 PF12728.7 51 pCP018901_00134 - 44 0.081 13.1 0.1 1 2 0.018 16 5.8 0.0 4 16 9 21 9 26 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 pCP018901_00134 - 44 0.081 13.1 0.1 2 2 0.0085 7.6 6.8 0.0 6 26 22 42 19 44 0.78 Helix-turn-helix domain MerR PF00376.23 38 pCP018901_00134 - 44 0.085 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 pCP018901_00134 - 44 0.085 12.7 0.0 2 2 0.01 9.3 6.1 0.0 4 17 22 35 21 41 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 pCP018901_00134 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 pCP018901_00134 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain SNF2_N PF00176.23 350 pCP020479_00001 - 2631 4.6e-14 51.9 0.1 1 1 7.2e-17 1.8e-13 49.9 0.1 59 251 1603 1882 1589 2063 0.80 SNF2 family N-terminal domain Eco57I PF07669.11 106 pCP020479_00001 - 2631 2.4e-09 37.6 1.8 1 3 0.72 1.8e+03 -0.6 0.1 9 45 486 520 485 524 0.81 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP020479_00001 - 2631 2.4e-09 37.6 1.8 2 3 1.7e-10 4.5e-07 30.3 0.0 3 101 886 980 883 985 0.75 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP020479_00001 - 2631 2.4e-09 37.6 1.8 3 3 0.15 3.8e+02 1.6 0.1 31 71 1113 1151 1084 1173 0.78 Eco57I restriction-modification methylase Helicase_C PF00271.31 111 pCP020479_00001 - 2631 2.2e-06 28.0 0.9 1 3 1.1 2.9e+03 -1.4 0.1 9 59 1246 1308 1239 1319 0.72 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP020479_00001 - 2631 2.2e-06 28.0 0.9 2 3 2.6 6.7e+03 -2.6 0.0 19 71 1632 1686 1621 1693 0.68 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP020479_00001 - 2631 2.2e-06 28.0 0.9 3 3 1.4e-08 3.6e-05 24.1 0.0 42 111 2132 2203 2102 2203 0.81 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP020479_00001 - 2631 0.0037 17.1 2.5 1 3 3.9e-06 0.01 15.6 0.1 8 108 1594 1691 1586 1704 0.77 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP020479_00001 - 2631 0.0037 17.1 2.5 2 3 0.44 1.1e+03 -0.8 0.1 77 135 1720 1789 1705 1815 0.61 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP020479_00001 - 2631 0.0037 17.1 2.5 3 3 3.5 9e+03 -3.7 0.1 69 106 2122 2165 2115 2178 0.66 DEAD/DEAH box helicase Methyltransf_23 PF13489.6 165 pCP020479_00001 - 2631 0.0041 17.0 0.1 1 2 1.9e-05 0.049 13.5 0.0 13 109 814 957 805 1002 0.71 Methyltransferase domain Methyltransf_23 PF13489.6 165 pCP020479_00001 - 2631 0.0041 17.0 0.1 2 2 0.52 1.3e+03 -0.9 0.0 110 159 2060 2110 2012 2113 0.78 Methyltransferase domain MTS PF05175.14 169 pCP020479_00001 - 2631 0.0059 16.2 0.0 1 1 7.4e-06 0.019 14.5 0.0 82 143 869 938 822 957 0.73 Methyltransferase small domain Hydrolase PF00702.26 210 pCP020479_00001 - 2631 0.1 12.8 1.1 1 3 4.6 1.2e+04 -3.7 0.0 21 80 333 422 328 438 0.62 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 210 pCP020479_00001 - 2631 0.1 12.8 1.1 2 3 0.068 1.8e+02 2.3 0.0 180 202 2117 2142 2089 2144 0.71 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 210 pCP020479_00001 - 2631 0.1 12.8 1.1 3 3 0.002 5.2 7.3 0.2 69 138 2272 2403 2239 2408 0.57 haloacid dehalogenase-like hydrolase AbiEi_4 PF13338.6 49 pCP020479_00002 - 181 6.2e-05 23.1 0.0 1 3 1.7e-08 0.00031 20.8 0.0 28 47 41 60 35 62 0.92 Transcriptional regulator, AbiEi antitoxin AbiEi_4 PF13338.6 49 pCP020479_00002 - 181 6.2e-05 23.1 0.0 2 3 0.18 3.2e+03 -1.6 0.0 32 42 93 103 91 105 0.80 Transcriptional regulator, AbiEi antitoxin AbiEi_4 PF13338.6 49 pCP020479_00002 - 181 6.2e-05 23.1 0.0 3 3 0.51 9.2e+03 -3.1 0.0 43 47 146 150 145 152 0.83 Transcriptional regulator, AbiEi antitoxin AbiEii PF08843.11 239 pCP020479_00003 - 305 5.5e-30 105.1 0.1 1 1 4.5e-34 8e-30 104.5 0.1 2 225 37 252 36 263 0.82 Nucleotidyl transferase AbiEii toxin, Type IV TA system JmjN PF02375.17 34 pCP020479_00004 - 86 1.2 9.2 3.8 1 3 0.0019 17 5.5 0.1 12 27 4 19 1 19 0.89 jmjN domain JmjN PF02375.17 34 pCP020479_00004 - 86 1.2 9.2 3.8 2 3 0.0051 46 4.1 0.3 8 26 55 73 53 75 0.89 jmjN domain JmjN PF02375.17 34 pCP020479_00004 - 86 1.2 9.2 3.8 3 3 0.22 2e+03 -1.1 0.0 14 22 77 85 74 86 0.82 jmjN domain MtrG PF04210.13 64 pCP020479_00004 - 86 1.2 9.1 5.1 1 2 0.0049 44 4.0 0.8 6 34 19 47 16 49 0.86 Tetrahydromethanopterin S-methyltransferase, subunit G MtrG PF04210.13 64 pCP020479_00004 - 86 1.2 9.1 5.1 2 2 8.9e-05 0.8 9.6 0.7 8 29 43 64 40 73 0.87 Tetrahydromethanopterin S-methyltransferase, subunit G RelB PF04221.12 83 pCP020479_00005 - 90 2.1e-09 37.2 0.0 1 1 1.5e-13 2.6e-09 36.9 0.0 1 58 2 59 2 86 0.84 RelB antitoxin ParE_toxin PF05016.15 90 pCP020479_00006 - 88 2.7e-05 24.7 0.5 1 1 1.7e-09 3e-05 24.5 0.5 12 82 9 78 5 86 0.75 ParE toxin of type II toxin-antitoxin system, parDE Apolipoprotein PF01442.18 190 pCP020479_00007 - 255 0.00016 21.6 2.2 1 2 1.9 5.7e+03 -3.0 0.1 29 41 86 98 72 103 0.45 Apolipoprotein A1/A4/E domain Apolipoprotein PF01442.18 190 pCP020479_00007 - 255 0.00016 21.6 2.2 2 2 5.5e-08 0.00016 21.6 2.2 34 107 169 241 147 253 0.85 Apolipoprotein A1/A4/E domain PP_kinase PF02503.17 202 pCP020479_00007 - 255 0.011 15.3 0.7 1 2 3.7e-06 0.011 15.3 0.7 111 193 19 101 6 108 0.83 Polyphosphate kinase middle domain PP_kinase PF02503.17 202 pCP020479_00007 - 255 0.011 15.3 0.7 2 2 1 3e+03 -2.4 0.1 119 134 193 208 183 234 0.54 Polyphosphate kinase middle domain T3SSipB PF16535.5 155 pCP020479_00007 - 255 0.025 15.0 0.3 1 1 1.8e-05 0.053 14.0 0.3 20 77 196 253 191 255 0.95 Type III cell invasion protein SipB Thump_like PF18096.1 78 pCP020479_00007 - 255 0.046 13.6 0.6 1 2 7.2e-05 0.21 11.5 0.1 15 49 59 94 51 102 0.87 THUMP domain-like Thump_like PF18096.1 78 pCP020479_00007 - 255 0.046 13.6 0.6 2 2 0.73 2.2e+03 -1.3 0.1 9 22 198 211 194 223 0.69 THUMP domain-like Fib_alpha PF08702.10 143 pCP020479_00007 - 255 7.7 6.7 9.5 1 2 0.58 1.7e+03 -0.9 0.1 33 69 10 45 2 72 0.69 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP020479_00007 - 255 7.7 6.7 9.5 2 2 0.00059 1.8 8.8 5.0 22 116 173 250 153 254 0.47 Fibrinogen alpha/beta chain family KxDL PF10241.9 86 pCP020479_00007 - 255 8.3 6.8 12.9 1 2 0.26 7.8e+02 0.4 0.3 30 46 86 102 83 105 0.86 Uncharacterized conserved protein KxDL PF10241.9 86 pCP020479_00007 - 255 8.3 6.8 12.9 2 2 0.00064 1.9 8.8 7.2 20 80 194 254 182 255 0.91 Uncharacterized conserved protein NYN PF01936.18 147 pCP020479_00008 - 215 2.8e-10 40.8 1.4 1 1 2.7e-13 9.5e-10 39.1 1.4 1 127 2 182 2 202 0.67 NYN domain Tn7_Tnp_TnsA_C PF08721.11 83 pCP020479_00008 - 215 0.0029 18.2 1.9 1 2 0.0054 20 5.9 0.1 25 55 15 45 6 55 0.83 TnsA endonuclease C terminal Tn7_Tnp_TnsA_C PF08721.11 83 pCP020479_00008 - 215 0.0029 18.2 1.9 2 2 0.00012 0.42 11.3 0.3 8 39 72 101 68 113 0.65 TnsA endonuclease C terminal TMPIT PF07851.13 324 pCP020479_00008 - 215 0.078 12.2 2.2 1 1 3e-05 0.11 11.7 2.2 3 88 8 94 6 133 0.62 TMPIT-like protein ApbA PF02558.16 152 pCP020479_00008 - 215 0.11 12.2 0.0 1 1 4.9e-05 0.18 11.5 0.0 66 113 150 196 109 206 0.81 Ketopantoate reductase PanE/ApbA Vir_act_alpha_C PF10400.9 77 pCP020479_00008 - 215 0.28 11.9 1.6 1 2 0.00016 0.57 10.9 1.1 12 73 4 81 1 85 0.73 Virulence activator alpha C-term Vir_act_alpha_C PF10400.9 77 pCP020479_00008 - 215 0.28 11.9 1.6 2 2 1.6 5.6e+03 -1.9 0.0 31 58 88 116 79 121 0.52 Virulence activator alpha C-term UvrD_C PF13361.6 349 pCP020479_00009 - 453 8e-16 58.3 3.4 1 2 3.7e-06 0.0066 15.9 0.6 2 47 227 276 226 333 0.69 UvrD-like helicase C-terminal domain UvrD_C PF13361.6 349 pCP020479_00009 - 453 8e-16 58.3 3.4 2 2 2.3e-14 4.2e-11 42.8 0.2 270 342 363 447 298 448 0.74 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 146 pCP020479_00009 - 453 2.3e-12 47.5 0.0 1 2 4.8e-15 8.7e-12 45.6 0.0 9 146 19 211 12 211 0.78 AAA domain AAA_19 PF13245.6 146 pCP020479_00009 - 453 2.3e-12 47.5 0.0 2 2 1.2 2.2e+03 -1.1 0.0 42 58 267 283 213 392 0.55 AAA domain Viral_helicase1 PF01443.18 234 pCP020479_00009 - 453 2e-09 37.6 1.2 1 3 2.1e-05 0.037 13.7 0.0 3 53 25 78 23 92 0.75 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 pCP020479_00009 - 453 2e-09 37.6 1.2 2 3 1.5e-06 0.0027 17.5 0.3 16 173 121 276 118 293 0.74 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 pCP020479_00009 - 453 2e-09 37.6 1.2 3 3 0.036 65 3.2 0.0 214 227 431 444 370 448 0.79 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.21 315 pCP020479_00009 - 453 5.4e-09 36.0 22.6 1 4 0.00082 1.5 8.3 0.1 13 32 20 39 8 46 0.77 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 pCP020479_00009 - 453 5.4e-09 36.0 22.6 2 4 0.0053 9.4 5.6 0.2 85 140 63 118 51 130 0.78 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 pCP020479_00009 - 453 5.4e-09 36.0 22.6 3 4 8.9e-11 1.6e-07 31.2 2.9 206 301 106 212 101 225 0.74 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 pCP020479_00009 - 453 5.4e-09 36.0 22.6 4 4 0.091 1.6e+02 1.6 4.9 106 209 326 433 255 446 0.71 UvrD/REP helicase N-terminal domain UvrD_C_2 PF13538.6 52 pCP020479_00009 - 453 1.2e-06 28.2 0.0 1 2 6.1e-05 0.11 12.3 0.0 2 22 381 401 380 412 0.85 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 52 pCP020479_00009 - 453 1.2e-06 28.2 0.0 2 2 3.1e-05 0.055 13.3 0.0 32 46 430 444 418 447 0.77 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 192 pCP020479_00009 - 453 5.1e-05 23.1 0.0 1 1 1.2e-07 0.00021 21.1 0.0 2 128 3 206 2 268 0.76 AAA domain ResIII PF04851.15 171 pCP020479_00009 - 453 0.0028 17.7 3.3 1 3 1.6e-06 0.0028 17.7 3.3 11 147 10 185 1 230 0.61 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP020479_00009 - 453 0.0028 17.7 3.3 2 3 1.4 2.6e+03 -1.7 0.0 62 88 212 238 184 281 0.65 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP020479_00009 - 453 0.0028 17.7 3.3 3 3 0.91 1.6e+03 -1.1 0.2 91 111 358 386 306 431 0.58 Type III restriction enzyme, res subunit PhoH PF02562.16 205 pCP020479_00009 - 453 0.0036 16.8 0.4 1 2 0.0039 7.1 6.0 0.0 7 41 5 42 2 63 0.79 PhoH-like protein PhoH PF02562.16 205 pCP020479_00009 - 453 0.0036 16.8 0.4 2 2 0.00062 1.1 8.7 0.1 122 168 173 217 168 230 0.76 PhoH-like protein AAA_22 PF13401.6 137 pCP020479_00009 - 453 0.024 14.9 0.2 1 1 7.7e-05 0.14 12.5 0.2 4 31 19 46 14 205 0.91 AAA domain AAA_11 PF13086.6 261 pCP020479_00009 - 453 0.15 11.8 0.2 1 3 0.26 4.7e+02 0.3 0.0 4 39 5 42 2 77 0.76 AAA domain AAA_11 PF13086.6 261 pCP020479_00009 - 453 0.15 11.8 0.2 2 3 0.0013 2.3 7.9 0.0 216 253 166 205 156 205 0.77 AAA domain AAA_11 PF13086.6 261 pCP020479_00009 - 453 0.15 11.8 0.2 3 3 1.2 2.2e+03 -1.8 0.1 173 188 409 424 324 441 0.62 AAA domain Fic PF02661.18 97 pCP020479_00011 - 303 3.8e-13 50.1 0.5 1 3 0.51 4.6e+03 -1.4 0.0 36 49 59 72 7 101 0.57 Fic/DOC family Fic PF02661.18 97 pCP020479_00011 - 303 3.8e-13 50.1 0.5 2 3 2.4e-16 2.1e-12 47.8 0.0 2 97 111 222 110 222 0.82 Fic/DOC family Fic PF02661.18 97 pCP020479_00011 - 303 3.8e-13 50.1 0.5 3 3 0.47 4.2e+03 -1.3 0.0 37 57 245 265 227 279 0.66 Fic/DOC family Tli4_N PF18443.1 137 pCP020479_00011 - 303 3.3 8.1 9.6 1 2 0.00015 1.3 9.4 6.2 39 122 5 86 1 141 0.77 Tle cognate immunity protein 4 N-terminal domain Tli4_N PF18443.1 137 pCP020479_00011 - 303 3.3 8.1 9.6 2 2 0.2 1.8e+03 -0.8 0.1 12 57 144 189 137 250 0.72 Tle cognate immunity protein 4 N-terminal domain YopX PF09643.10 131 pCP020479_00012 - 143 4.1e-12 46.3 6.8 1 2 0.0019 35 4.5 0.1 1 25 7 31 7 39 0.78 YopX protein YopX PF09643.10 131 pCP020479_00012 - 143 4.1e-12 46.3 6.8 2 2 1.7e-15 3.1e-11 43.5 4.1 48 130 34 126 22 127 0.73 YopX protein TMF_DNA_bd PF12329.8 74 pCP020479_00013 - 636 0.00073 19.5 18.5 1 6 0.22 3.9e+03 -2.1 6.0 39 64 231 256 215 283 0.68 TATA element modulatory factor 1 DNA binding TMF_DNA_bd PF12329.8 74 pCP020479_00013 - 636 0.00073 19.5 18.5 2 6 0.085 1.5e+03 -0.8 2.8 41 69 327 355 303 358 0.78 TATA element modulatory factor 1 DNA binding TMF_DNA_bd PF12329.8 74 pCP020479_00013 - 636 0.00073 19.5 18.5 3 6 0.038 6.8e+02 0.4 17.6 6 71 392 464 388 467 0.65 TATA element modulatory factor 1 DNA binding TMF_DNA_bd PF12329.8 74 pCP020479_00013 - 636 0.00073 19.5 18.5 4 6 4.1e-08 0.00073 19.5 18.5 1 72 464 535 464 537 0.95 TATA element modulatory factor 1 DNA binding TMF_DNA_bd PF12329.8 74 pCP020479_00013 - 636 0.00073 19.5 18.5 5 6 0.088 1.6e+03 -0.8 4.9 36 71 530 565 529 567 0.88 TATA element modulatory factor 1 DNA binding TMF_DNA_bd PF12329.8 74 pCP020479_00013 - 636 0.00073 19.5 18.5 6 6 0.054 9.7e+02 -0.1 14.1 28 71 567 610 555 616 0.82 TATA element modulatory factor 1 DNA binding DUF386 PF04074.12 148 pCP020479_00014 - 82 0.024 14.5 0.0 1 1 1.4e-06 0.026 14.5 0.0 89 132 7 54 1 71 0.80 YhcH/YjgK/YiaL AAA_31 PF13614.6 177 pCP020479_00015 - 237 8.4e-18 64.9 2.1 1 3 2.4e-14 3.1e-11 43.5 0.0 3 48 15 59 12 76 0.80 AAA domain AAA_31 PF13614.6 177 pCP020479_00015 - 237 8.4e-18 64.9 2.1 2 3 2.7e-07 0.00034 20.6 0.1 99 175 73 148 63 152 0.87 AAA domain AAA_31 PF13614.6 177 pCP020479_00015 - 237 8.4e-18 64.9 2.1 3 3 2.4 3e+03 -2.1 0.0 69 86 174 191 163 220 0.64 AAA domain CbiA PF01656.23 128 pCP020479_00015 - 237 6e-17 61.9 0.2 1 1 6.7e-20 8.6e-17 61.4 0.2 2 126 17 207 16 209 0.81 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 262 pCP020479_00015 - 237 7.9e-15 54.8 0.3 1 3 9.8e-10 1.3e-06 28.0 0.0 2 54 15 65 14 71 0.90 ATPase MipZ MipZ PF09140.11 262 pCP020479_00015 - 237 7.9e-15 54.8 0.3 2 3 1.1e-08 1.4e-05 24.6 0.1 88 142 80 134 73 151 0.87 ATPase MipZ MipZ PF09140.11 262 pCP020479_00015 - 237 7.9e-15 54.8 0.3 3 3 3.7 4.7e+03 -3.4 0.0 211 231 191 211 174 222 0.72 ATPase MipZ VirC1 PF07015.11 231 pCP020479_00015 - 237 5.1e-07 29.2 0.0 1 1 5.9e-10 7.6e-07 28.7 0.0 6 184 18 201 13 217 0.77 VirC1 protein ParA PF10609.9 246 pCP020479_00015 - 237 1.5e-06 27.9 0.2 1 2 8.4e-08 0.00011 21.8 0.0 3 41 13 50 11 54 0.90 NUBPL iron-transfer P-loop NTPase ParA PF10609.9 246 pCP020479_00015 - 237 1.5e-06 27.9 0.2 2 2 0.02 25 4.2 0.0 110 163 90 141 78 172 0.84 NUBPL iron-transfer P-loop NTPase CLP1_P PF16575.5 188 pCP020479_00015 - 237 5.2e-05 23.1 0.0 1 2 7.1e-07 0.00091 19.1 0.0 4 35 24 54 21 58 0.88 mRNA cleavage and polyadenylation factor CLP1 P-loop CLP1_P PF16575.5 188 pCP020479_00015 - 237 5.2e-05 23.1 0.0 2 2 0.15 1.9e+02 1.7 0.0 99 112 88 101 69 151 0.76 mRNA cleavage and polyadenylation factor CLP1 P-loop ArsA_ATPase PF02374.15 305 pCP020479_00015 - 237 0.00018 20.8 0.3 1 1 2.4e-07 0.0003 20.1 0.1 3 107 16 122 12 145 0.59 Anion-transporting ATPase SRP54 PF00448.22 196 pCP020479_00015 - 237 0.00025 20.7 1.1 1 2 8.4e-07 0.0011 18.7 0.4 11 99 24 107 13 115 0.77 SRP54-type protein, GTPase domain SRP54 PF00448.22 196 pCP020479_00015 - 237 0.00025 20.7 1.1 2 2 4.4 5.7e+03 -3.3 0.0 103 127 168 195 165 218 0.57 SRP54-type protein, GTPase domain AAA_33 PF13671.6 143 pCP020479_00015 - 237 0.016 15.4 0.0 1 1 3.3e-05 0.042 14.0 0.0 9 86 24 108 22 117 0.75 AAA domain Fer4_NifH PF00142.18 271 pCP020479_00015 - 237 0.016 14.6 0.0 1 1 3e-05 0.038 13.4 0.0 7 43 21 55 15 103 0.85 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF1188 PF06690.11 248 pCP020479_00015 - 237 0.057 13.0 2.3 1 2 6.4e-05 0.081 12.5 1.9 57 159 33 153 26 222 0.80 Protein of unknown function (DUF1188) DUF1188 PF06690.11 248 pCP020479_00015 - 237 0.057 13.0 2.3 2 2 3.1 4e+03 -2.9 0.0 126 147 210 231 201 235 0.69 Protein of unknown function (DUF1188) AAA_26 PF13500.6 198 pCP020479_00015 - 237 0.089 12.6 1.2 1 2 0.005 6.3 6.6 0.1 121 153 4 36 1 49 0.65 AAA domain AAA_26 PF13500.6 198 pCP020479_00015 - 237 0.089 12.6 1.2 2 2 0.0069 8.8 6.1 0.7 11 31 24 43 13 192 0.48 AAA domain AAA_18 PF13238.6 130 pCP020479_00015 - 237 0.098 13.2 0.6 1 2 0.001 1.3 9.5 0.1 8 83 24 101 22 129 0.57 AAA domain AAA_18 PF13238.6 130 pCP020479_00015 - 237 0.098 13.2 0.6 2 2 0.28 3.5e+02 1.7 0.1 17 62 166 219 161 232 0.69 AAA domain PAC2 PF09754.9 213 pCP020479_00015 - 237 0.12 12.3 0.0 1 1 0.00013 0.16 11.9 0.0 27 112 108 198 93 231 0.73 PAC2 family DUF4271 PF14093.6 207 pCP020479_00016 - 135 0.0013 18.7 1.3 1 1 7.7e-07 0.0017 18.3 1.3 8 127 13 132 12 133 0.67 Domain of unknown function (DUF4271) SLAC1 PF03595.17 324 pCP020479_00016 - 135 0.0015 17.9 2.7 1 1 9e-07 0.002 17.4 2.8 134 197 56 120 12 132 0.81 Voltage-dependent anion channel PEN-2 PF10251.9 93 pCP020479_00016 - 135 0.0075 16.7 0.7 1 2 3.1 7e+03 -2.5 0.0 65 86 16 36 13 44 0.53 Presenilin enhancer-2 subunit of gamma secretase PEN-2 PF10251.9 93 pCP020479_00016 - 135 0.0075 16.7 0.7 2 2 6.2e-06 0.014 15.8 0.5 18 66 60 108 53 132 0.80 Presenilin enhancer-2 subunit of gamma secretase DUF3413 PF11893.8 248 pCP020479_00016 - 135 0.028 13.6 2.1 1 2 1 2.3e+03 -2.5 0.0 170 179 15 24 4 39 0.57 Domain of unknown function (DUF3413) DUF3413 PF11893.8 248 pCP020479_00016 - 135 0.028 13.6 2.1 2 2 1.3e-05 0.029 13.5 1.2 16 71 55 114 50 131 0.72 Domain of unknown function (DUF3413) DUF456 PF04306.13 139 pCP020479_00016 - 135 0.033 14.5 4.7 1 1 2.6e-05 0.058 13.7 4.7 25 87 52 115 12 119 0.81 Protein of unknown function (DUF456) TctB PF07331.11 135 pCP020479_00016 - 135 0.17 12.1 8.2 1 1 0.00014 0.32 11.3 8.2 14 97 23 119 11 132 0.57 Tripartite tricarboxylate transporter TctB family DUF1772 PF08592.11 137 pCP020479_00016 - 135 0.25 11.7 2.0 1 1 9.7e-05 0.22 11.8 0.7 32 85 58 111 34 118 0.74 Domain of unknown function (DUF1772) DUF4405 PF14358.6 66 pCP020479_00016 - 135 4.8 7.8 8.7 1 2 0.071 1.6e+02 2.9 0.6 49 61 16 28 11 29 0.91 Domain of unknown function (DUF4405) DUF4405 PF14358.6 66 pCP020479_00016 - 135 4.8 7.8 8.7 2 2 0.0013 2.9 8.5 1.9 5 45 98 134 94 135 0.79 Domain of unknown function (DUF4405) TSNAXIP1_N PF15739.5 111 pCP020479_00017 - 102 0.012 16.0 2.3 1 1 1.6e-06 0.015 15.7 2.3 35 69 34 70 30 102 0.72 Translin-associated factor X-interacting N-terminus CsoSCA PF08936.10 455 pCP020479_00017 - 102 0.045 12.4 0.0 1 1 5.7e-06 0.051 12.2 0.0 352 388 41 77 24 83 0.89 Carboxysome Shell Carbonic Anhydrase SPC12 PF06645.13 71 pCP020479_00018 - 175 0.33 11.1 8.5 1 2 0.14 1.2e+03 -0.4 0.1 45 60 61 77 49 85 0.77 Microsomal signal peptidase 12 kDa subunit (SPC12) SPC12 PF06645.13 71 pCP020479_00018 - 175 0.33 11.1 8.5 2 2 9.1e-06 0.082 13.0 3.5 10 52 98 141 93 143 0.80 Microsomal signal peptidase 12 kDa subunit (SPC12) Arteri_Gl PF00951.18 179 pCP020479_00018 - 175 8.1 6.2 11.4 1 2 0.004 36 4.1 2.8 57 97 56 94 43 114 0.77 Arterivirus GL envelope glycoprotein Arteri_Gl PF00951.18 179 pCP020479_00018 - 175 8.1 6.2 11.4 2 2 0.00053 4.8 7.0 2.1 34 70 115 151 108 172 0.82 Arterivirus GL envelope glycoprotein DUF4521 PF15021.6 204 pCP020479_00019 - 314 0.007 16.3 0.2 1 1 6.4e-07 0.011 15.6 0.2 52 105 94 147 83 164 0.85 Protein of unknown function (DUF4521) SOAR PF16533.5 101 pCP020479_00020 - 178 0.023 14.7 1.5 1 2 0.51 1.3e+03 -0.6 0.1 11 25 53 67 31 89 0.68 STIM1 Orai1-activating region SOAR PF16533.5 101 pCP020479_00020 - 178 0.023 14.7 1.5 2 2 8.8e-06 0.023 14.7 1.5 6 70 99 165 95 174 0.86 STIM1 Orai1-activating region zf-RING_9 PF13901.6 206 pCP020479_00020 - 178 0.071 13.1 3.2 1 1 3.7e-05 0.095 12.7 3.2 34 147 21 137 18 146 0.84 Putative zinc-RING and/or ribbon Pro-rich_19 PF15455.6 363 pCP020479_00020 - 178 0.098 11.8 0.1 1 1 4.6e-05 0.12 11.5 0.1 26 102 3 76 1 91 0.82 Proline-rich 19 DUF2959 PF11172.8 190 pCP020479_00020 - 178 0.21 11.7 8.6 1 2 1.9e-05 0.048 13.8 4.0 115 190 33 110 17 110 0.89 Protein of unknown function (DUF2959) DUF2959 PF11172.8 190 pCP020479_00020 - 178 0.21 11.7 8.6 2 2 0.35 9e+02 -0.1 0.1 94 122 111 139 108 144 0.77 Protein of unknown function (DUF2959) DASH_Hsk3 PF08227.11 45 pCP020479_00020 - 178 0.79 10.1 3.9 1 4 2.7 7e+03 -2.5 0.0 7 12 46 51 35 53 0.51 DASH complex subunit Hsk3 like DASH_Hsk3 PF08227.11 45 pCP020479_00020 - 178 0.79 10.1 3.9 2 4 0.44 1.1e+03 0.0 0.0 4 19 75 90 74 103 0.72 DASH complex subunit Hsk3 like DASH_Hsk3 PF08227.11 45 pCP020479_00020 - 178 0.79 10.1 3.9 3 4 0.39 9.9e+02 0.2 0.1 9 23 126 140 125 141 0.79 DASH complex subunit Hsk3 like DASH_Hsk3 PF08227.11 45 pCP020479_00020 - 178 0.79 10.1 3.9 4 4 0.0013 3.4 8.1 0.1 4 19 150 165 149 169 0.91 DASH complex subunit Hsk3 like DUF1664 PF07889.12 124 pCP020479_00020 - 178 1.2 9.1 7.2 1 2 0.0049 13 5.9 1.2 63 120 35 92 24 96 0.71 Protein of unknown function (DUF1664) DUF1664 PF07889.12 124 pCP020479_00020 - 178 1.2 9.1 7.2 2 2 0.0051 13 5.8 0.3 57 79 146 168 125 177 0.75 Protein of unknown function (DUF1664) Fib_alpha PF08702.10 143 pCP020479_00020 - 178 3.4 7.8 6.7 1 2 0.011 29 4.8 3.8 17 76 34 93 18 141 0.65 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP020479_00020 - 178 3.4 7.8 6.7 2 2 0.012 30 4.8 0.5 32 78 123 169 111 176 0.78 Fibrinogen alpha/beta chain family SpoIIIAH PF12685.7 210 pCP020479_00021 - 218 0.00058 19.7 1.1 1 1 8.9e-08 0.0008 19.3 1.1 8 122 30 159 22 173 0.57 SpoIIIAH-like protein ASFV_J13L PF05568.11 189 pCP020479_00021 - 218 0.0095 15.7 0.3 1 1 1.8e-06 0.016 15.0 0.3 27 118 17 114 9 156 0.71 African swine fever virus J13L protein Baculo_F PF12259.8 610 pCP020479_00022 - 71 0.02 13.4 0.7 1 1 3.5e-06 0.021 13.4 0.7 160 226 1 70 1 71 0.84 Baculovirus F protein CcdA PF07362.12 71 pCP020479_00022 - 71 0.031 14.7 0.0 1 1 7.9e-06 0.047 14.1 0.0 33 63 14 42 4 47 0.79 Post-segregation antitoxin CcdA Phage_Mu_Gam PF07352.12 155 pCP020479_00022 - 71 0.086 12.7 0.0 1 1 1.5e-05 0.091 12.7 0.0 3 28 15 40 14 70 0.86 Bacteriophage Mu Gam like protein Yae1_N PF09811.9 39 pCP020479_00023 - 286 0.86 9.4 2.9 1 3 2.5e-05 0.44 10.3 0.2 2 22 39 59 38 60 0.95 Essential protein Yae1, N terminal Yae1_N PF09811.9 39 pCP020479_00023 - 286 0.86 9.4 2.9 2 3 0.43 7.7e+03 -3.3 0.0 8 14 94 100 93 102 0.52 Essential protein Yae1, N terminal Yae1_N PF09811.9 39 pCP020479_00023 - 286 0.86 9.4 2.9 3 3 0.42 7.6e+03 -3.3 0.0 15 21 159 165 158 166 0.48 Essential protein Yae1, N terminal DUF5638 PF18688.1 104 pCP020479_00026 - 208 0.0095 16.2 6.4 1 3 0.00025 4.5 7.6 0.6 23 50 10 37 1 59 0.71 Family of unknown function (DUF5638) DUF5638 PF18688.1 104 pCP020479_00026 - 208 0.0095 16.2 6.4 2 3 0.18 3.1e+03 -1.5 0.0 64 82 76 94 73 101 0.80 Family of unknown function (DUF5638) DUF5638 PF18688.1 104 pCP020479_00026 - 208 0.0095 16.2 6.4 3 3 2.5e-05 0.45 10.8 0.3 9 54 149 194 145 199 0.86 Family of unknown function (DUF5638) YvrJ PF12841.7 36 pCP020479_00027 - 92 2.2 7.9 5.6 1 3 0.14 2.6e+03 -2.0 0.0 22 32 17 27 15 30 0.79 YvrJ protein family YvrJ PF12841.7 36 pCP020479_00027 - 92 2.2 7.9 5.6 2 3 0.00026 4.7 6.8 0.1 9 17 40 48 40 48 0.94 YvrJ protein family YvrJ PF12841.7 36 pCP020479_00027 - 92 2.2 7.9 5.6 3 3 0.0044 79 2.9 0.3 19 28 78 87 76 90 0.82 YvrJ protein family Phage_holin_6_1 PF09682.10 101 pCP020479_00028 - 56 0.015 15.7 0.2 1 1 3.9e-06 0.017 15.5 0.2 5 43 10 52 6 55 0.69 Bacteriophage holin of superfamily 6 (Holin_LLH) TMEM151 PF14857.6 428 pCP020479_00028 - 56 0.029 13.3 0.0 1 1 6.9e-06 0.031 13.2 0.0 68 100 10 42 7 54 0.83 TMEM151 family Mlo PF03094.15 479 pCP020479_00028 - 56 0.033 12.6 0.2 1 1 7.9e-06 0.035 12.5 0.2 12 54 12 54 6 56 0.90 Mlo family Na_Ala_symp PF01235.17 393 pCP020479_00028 - 56 0.047 13.0 0.0 1 1 1.2e-05 0.053 12.8 0.0 350 390 6 46 2 48 0.90 Sodium:alanine symporter family Yae1_N PF09811.9 39 pCP020479_00029 - 215 0.42 10.3 4.8 1 2 8.5e-06 0.15 11.8 2.0 15 34 34 53 33 58 0.59 Essential protein Yae1, N terminal Yae1_N PF09811.9 39 pCP020479_00029 - 215 0.42 10.3 4.8 2 2 0.68 1.2e+04 -3.9 0.0 30 35 70 75 69 76 0.72 Essential protein Yae1, N terminal DUF4234 PF14018.6 70 pCP020479_00030 - 86 0.033 14.3 1.1 1 2 2.7e-06 0.049 13.8 0.6 42 69 9 36 1 37 0.79 Domain of unknown function (DUF4234) DUF4234 PF14018.6 70 pCP020479_00030 - 86 0.033 14.3 1.1 2 2 0.18 3.2e+03 -1.7 0.0 25 37 41 53 38 74 0.61 Domain of unknown function (DUF4234) Ribosomal_L44 PF00935.19 76 pCP020479_00031 - 128 0.1 13.1 0.6 1 3 5.8e-06 0.1 13.1 0.6 34 73 5 44 3 45 0.90 Ribosomal protein L44 Ribosomal_L44 PF00935.19 76 pCP020479_00031 - 128 0.1 13.1 0.6 2 3 0.28 5.1e+03 -2.0 0.0 53 64 65 76 62 80 0.58 Ribosomal protein L44 Ribosomal_L44 PF00935.19 76 pCP020479_00031 - 128 0.1 13.1 0.6 3 3 0.33 5.8e+03 -2.2 1.0 39 51 83 95 68 98 0.60 Ribosomal protein L44 Imm8 PF15586.6 114 pCP020479_00032 - 373 0.034 14.2 0.8 1 2 0.86 3.8e+03 -2.1 0.0 5 33 100 128 98 136 0.73 Immunity protein 8 Imm8 PF15586.6 114 pCP020479_00032 - 373 0.034 14.2 0.8 2 2 3e-05 0.14 12.2 0.1 25 95 299 368 276 371 0.83 Immunity protein 8 Orthopox_F7 PF05813.12 80 pCP020479_00032 - 373 0.057 13.5 0.0 1 1 3.8e-05 0.17 12.0 0.0 7 67 96 156 91 164 0.79 Orthopoxvirus F7 protein PYST-C1 PF09690.10 55 pCP020479_00032 - 373 1.1 9.0 7.2 1 1 0.00061 2.7 7.8 7.2 7 42 219 254 216 265 0.81 Plasmodium yoelii subtelomeric region (PYST-C1) T3SSipB PF16535.5 155 pCP020479_00032 - 373 4.3 7.8 13.9 1 2 0.18 8.2e+02 0.4 0.0 123 150 7 34 2 38 0.83 Type III cell invasion protein SipB T3SSipB PF16535.5 155 pCP020479_00032 - 373 4.3 7.8 13.9 2 2 0.00092 4.1 7.9 10.1 46 151 253 355 216 367 0.69 Type III cell invasion protein SipB Remorin_C PF03763.13 107 pCP020479_00033 - 220 0.76 9.7 6.9 1 3 0.0025 44 4.0 0.0 60 80 6 26 3 46 0.82 Remorin, C-terminal region Remorin_C PF03763.13 107 pCP020479_00033 - 220 0.76 9.7 6.9 2 3 0.00016 2.8 7.9 0.4 23 53 116 147 115 155 0.77 Remorin, C-terminal region Remorin_C PF03763.13 107 pCP020479_00033 - 220 0.76 9.7 6.9 3 3 0.052 9.3e+02 -0.2 0.4 28 43 187 202 174 213 0.40 Remorin, C-terminal region Corona_NS3b PF03053.14 226 pCP020479_00034 - 101 0.0098 15.7 0.2 1 1 2.6e-06 0.011 15.5 0.2 29 80 19 71 10 82 0.78 ORF3b coronavirus protein DUF5058 PF16481.5 222 pCP020479_00034 - 101 0.042 13.6 0.2 1 1 9.8e-06 0.044 13.5 0.2 132 210 8 87 1 90 0.70 Domain of unknown function (DUF5058) MscS_TM PF12794.7 339 pCP020479_00034 - 101 0.052 12.4 0.0 1 1 1.3e-05 0.06 12.2 0.0 124 189 29 93 13 100 0.77 Mechanosensitive ion channel inner membrane domain 1 MBOAT_2 PF13813.6 83 pCP020479_00034 - 101 0.061 13.6 0.1 1 1 1.8e-05 0.083 13.2 0.1 21 73 30 82 29 91 0.86 Membrane bound O-acyl transferase family ETRAMP PF09716.10 83 pCP020479_00035 - 52 0.021 14.9 0.2 1 1 1.3e-06 0.024 14.7 0.2 4 38 11 44 9 51 0.78 Malarial early transcribed membrane protein (ETRAMP) Baculo_PEP_C PF04513.12 140 pCP020479_00037 - 164 0.19 11.8 7.2 1 1 1.6e-05 0.29 11.2 7.2 25 128 10 111 2 128 0.57 Baculovirus polyhedron envelope protein, PEP, C terminus Cytochrom_B558a PF05038.13 184 pCP020479_00038 - 92 0.0086 15.7 0.0 1 1 1.1e-06 0.0099 15.5 0.0 14 66 35 87 22 91 0.85 Cytochrome Cytochrome b558 alpha-subunit DUF3040 PF11239.8 84 pCP020479_00038 - 92 0.3 11.4 1.4 1 2 3.7e-05 0.33 11.2 0.3 40 82 29 65 14 70 0.72 Protein of unknown function (DUF3040) DUF3040 PF11239.8 84 pCP020479_00038 - 92 0.3 11.4 1.4 2 2 0.52 4.7e+03 -2.0 0.0 8 16 79 87 75 88 0.80 Protein of unknown function (DUF3040) DUF746 PF05344.11 64 pCP020479_00039 - 54 0.045 13.6 0.0 1 1 2.6e-06 0.046 13.5 0.0 2 48 6 52 5 54 0.92 Domain of Unknown Function (DUF746) Tetraspanin PF00335.20 229 pCP020479_00041 - 54 0.022 14.5 0.0 1 1 5.1e-06 0.023 14.4 0.0 78 107 6 37 2 52 0.75 Tetraspanin family Saf_2TM PF18303.1 152 pCP020479_00041 - 54 0.041 13.5 0.0 1 1 1e-05 0.045 13.3 0.0 67 99 10 41 2 47 0.78 SAVED-fused 2TM effector domain OPA3 PF07047.12 125 pCP020479_00041 - 54 0.075 12.8 0.0 1 1 2.1e-05 0.095 12.5 0.0 82 115 18 51 14 53 0.90 Optic atrophy 3 protein (OPA3) LapA_dom PF06305.11 64 pCP020479_00041 - 54 0.078 12.8 0.1 1 1 2.4e-05 0.11 12.4 0.1 20 61 11 49 5 52 0.64 Lipopolysaccharide assembly protein A domain CPSase_L_D2 PF02786.17 211 pCP020479_00042 - 222 0.0071 15.9 0.3 1 1 2.7e-06 0.0097 15.4 0.3 58 155 40 147 36 182 0.83 Carbamoyl-phosphate synthase L chain, ATP binding domain AAA_23 PF13476.6 200 pCP020479_00042 - 222 0.074 13.6 6.5 1 1 2.8e-05 0.1 13.1 6.0 60 179 68 211 29 222 0.73 AAA domain PBECR3 PF18812.1 115 pCP020479_00042 - 222 0.19 11.7 6.8 1 2 2.2e-05 0.079 12.9 3.5 36 98 33 92 27 104 0.77 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 PBECR3 PF18812.1 115 pCP020479_00042 - 222 0.19 11.7 6.8 2 2 0.57 2e+03 -1.3 0.0 45 64 134 152 100 166 0.74 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 RecG_N PF17190.4 89 pCP020479_00042 - 222 0.29 11.9 3.6 1 2 0.29 1e+03 0.5 0.2 16 39 38 61 28 81 0.68 RecG N-terminal helical domain RecG_N PF17190.4 89 pCP020479_00042 - 222 0.29 11.9 3.6 2 2 0.00011 0.38 11.5 0.4 7 50 170 212 166 218 0.78 RecG N-terminal helical domain DUF5301 PF17225.3 97 pCP020479_00042 - 222 4.5 7.8 8.1 1 3 0.4 1.4e+03 -0.3 0.1 29 44 39 54 23 83 0.73 Domain of unknown function (DUF5300) DUF5301 PF17225.3 97 pCP020479_00042 - 222 4.5 7.8 8.1 2 3 0.0049 18 5.9 0.1 60 95 90 125 79 127 0.87 Domain of unknown function (DUF5300) DUF5301 PF17225.3 97 pCP020479_00042 - 222 4.5 7.8 8.1 3 3 0.011 40 4.7 1.3 18 58 168 209 153 222 0.72 Domain of unknown function (DUF5300) Tape_meas_lam_C PF09718.10 76 pCP020479_00043 - 123 0.12 12.5 0.3 1 1 1.1e-05 0.19 11.9 0.3 23 59 76 113 72 116 0.86 Lambda phage tail tape-measure protein (Tape_meas_lam_C) SLT PF01464.20 117 pCP020479_00044 - 187 3.3e-14 52.5 0.1 1 1 2.7e-18 4.8e-14 52.0 0.1 4 98 29 163 26 174 0.93 Transglycosylase SLT domain MFS_Mycoplasma PF07672.13 274 pCP020479_00046 - 51 0.0037 16.6 0.3 1 1 1e-06 0.0037 16.6 0.3 37 82 4 49 1 51 0.85 Mycoplasma MFS transporter OSTMP1 PF09777.9 234 pCP020479_00046 - 51 0.0094 15.4 0.1 1 1 2.6e-06 0.0094 15.4 0.1 188 226 5 47 1 51 0.74 Osteopetrosis-associated transmembrane protein 1 precursor DUF3139 PF11337.8 83 pCP020479_00046 - 51 0.0097 16.5 0.6 1 1 3.4e-06 0.012 16.2 0.6 6 48 4 46 2 50 0.78 Protein of unknown function (DUF3139) ATP-synt_8 PF00895.20 55 pCP020479_00046 - 51 0.07 13.6 1.9 1 1 2.5e-05 0.088 13.3 1.9 5 49 3 46 3 50 0.72 ATP synthase protein 8 Presenilin PF01080.17 398 pCP020479_00046 - 51 1 8.0 3.9 1 1 0.00026 0.93 8.2 3.3 89 117 3 31 1 40 0.90 Presenilin PBECR3 PF18812.1 115 pCP020479_00047 - 176 0.051 13.5 3.0 1 1 4.8e-06 0.087 12.8 3.0 20 84 14 78 2 103 0.80 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 AAA_10 PF12846.7 362 pCP020479_00049 - 778 1.5e-05 24.1 0.1 1 2 0.0034 21 3.9 0.0 20 45 372 397 366 442 0.89 AAA-like domain AAA_10 PF12846.7 362 pCP020479_00049 - 778 1.5e-05 24.1 0.1 2 2 2.1e-07 0.0012 17.8 0.0 245 303 659 716 643 749 0.78 AAA-like domain AAA_22 PF13401.6 137 pCP020479_00049 - 778 0.17 12.2 0.9 1 3 0.00087 5.2 7.3 0.0 8 29 376 397 373 421 0.87 AAA domain AAA_22 PF13401.6 137 pCP020479_00049 - 778 0.17 12.2 0.9 2 3 1.4 8.3e+03 -3.0 0.1 40 66 510 537 485 547 0.61 AAA domain AAA_22 PF13401.6 137 pCP020479_00049 - 778 0.17 12.2 0.9 3 3 0.033 2e+02 2.2 0.0 25 104 584 667 581 714 0.68 AAA domain DUF87 PF01935.17 227 pCP020479_00049 - 778 0.91 9.6 9.9 1 2 0.72 4.3e+03 -2.5 0.1 165 221 239 294 234 298 0.79 Helicase HerA, central domain DUF87 PF01935.17 227 pCP020479_00049 - 778 0.91 9.6 9.9 2 2 0.00017 1 9.4 5.2 19 53 369 402 359 602 0.71 Helicase HerA, central domain HTH_Crp_2 PF13545.6 68 pCP020479_00050 - 281 0.0016 18.4 0.2 1 1 2e-06 0.0059 16.6 0.1 23 55 83 115 51 126 0.85 Crp-like helix-turn-helix domain GntR PF00392.21 64 pCP020479_00050 - 281 0.0078 15.8 0.1 1 1 6.5e-06 0.019 14.6 0.1 29 61 86 118 83 121 0.94 Bacterial regulatory proteins, gntR family Phage_rep_O PF04492.13 95 pCP020479_00050 - 281 0.035 14.7 0.1 1 1 3e-05 0.091 13.4 0.1 22 85 51 117 43 122 0.82 Bacteriophage replication protein O Utp11 PF03998.13 245 pCP020479_00050 - 281 0.039 13.9 8.7 1 1 2.2e-05 0.067 13.1 8.7 90 216 145 271 128 281 0.61 Utp11 protein DUF5359 PF17313.2 56 pCP020479_00050 - 281 0.048 13.6 0.1 1 1 3.7e-05 0.11 12.5 0.1 26 53 150 177 146 179 0.88 Family of unknown function (DUF5359) DUF1413 PF07205.11 69 pCP020479_00050 - 281 0.062 13.3 1.4 1 2 7.7e-05 0.23 11.5 0.0 20 57 127 165 119 176 0.84 Domain of unknown function (DUF1413) DUF1413 PF07205.11 69 pCP020479_00050 - 281 0.062 13.3 1.4 2 2 0.35 1.1e+03 -0.2 0.3 6 21 235 250 231 271 0.60 Domain of unknown function (DUF1413) HLH PF00010.26 53 pCP020479_00051 - 139 0.12 12.3 1.8 1 2 7.9e-06 0.14 12.1 0.6 15 47 67 99 66 100 0.94 Helix-loop-helix DNA-binding domain HLH PF00010.26 53 pCP020479_00051 - 139 0.12 12.3 1.8 2 2 0.26 4.7e+03 -2.3 0.0 17 35 117 134 110 135 0.68 Helix-loop-helix DNA-binding domain O-antigen_lig PF13425.6 468 pCP020479_00052 - 126 1.7e-06 27.1 2.5 1 1 6.9e-10 2.1e-06 26.8 2.5 216 335 8 118 7 124 0.63 O-antigen ligase like membrane protein CLN3 PF02487.17 398 pCP020479_00052 - 126 0.00068 18.8 0.1 1 1 2.5e-07 0.00074 18.7 0.1 140 223 34 116 5 126 0.43 CLN3 protein TMEM171 PF15471.6 320 pCP020479_00052 - 126 0.031 13.3 0.0 1 1 1.4e-05 0.04 12.9 0.0 153 204 33 91 23 99 0.75 Transmembrane protein family 171 Connexin PF00029.19 234 pCP020479_00052 - 126 0.061 13.1 0.4 1 1 3e-05 0.089 12.5 0.4 78 146 42 111 36 125 0.44 Connexin DUF4834 PF16118.5 99 pCP020479_00052 - 126 0.39 11.7 9.4 1 1 0.0007 2.1 9.4 9.4 8 80 41 112 8 122 0.73 Domain of unknown function (DUF4834) DUF4355 PF14265.6 125 pCP020479_00052 - 126 0.51 10.6 11.2 1 1 0.00023 0.7 10.1 11.2 30 82 68 121 62 125 0.65 Domain of unknown function (DUF4355) AAA PF00004.29 132 pCP020479_00053 - 410 4.6e-15 56.2 0.0 1 1 4.9e-18 8e-15 55.4 0.0 2 131 164 300 163 301 0.88 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 138 pCP020479_00053 - 410 1.1e-05 25.5 0.0 1 1 1.5e-08 2.5e-05 24.3 0.0 2 102 163 267 162 290 0.78 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 137 pCP020479_00053 - 410 2.8e-05 24.4 0.2 1 1 3.1e-06 0.0051 17.1 0.2 5 132 160 276 155 281 0.83 AAA domain AAA_14 PF13173.6 131 pCP020479_00053 - 410 6.1e-05 23.1 0.2 1 2 1.9 3.2e+03 -1.9 0.0 107 116 27 36 9 76 0.54 AAA domain AAA_14 PF13173.6 131 pCP020479_00053 - 410 6.1e-05 23.1 0.2 2 2 1.2e-07 0.0002 21.4 0.0 4 77 162 236 159 307 0.77 AAA domain DUF815 PF05673.13 250 pCP020479_00053 - 410 0.00029 20.1 0.0 1 1 2.8e-07 0.00046 19.4 0.0 24 116 131 232 116 275 0.85 Protein of unknown function (DUF815) AAA_2 PF07724.14 171 pCP020479_00053 - 410 0.0015 18.7 0.0 1 1 1.7e-06 0.0028 17.8 0.0 6 87 163 238 159 280 0.76 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 143 pCP020479_00053 - 410 0.011 15.9 0.0 1 1 1.3e-05 0.021 15.0 0.0 2 87 163 295 163 312 0.81 AAA domain RuvB_N PF05496.12 159 pCP020479_00053 - 410 0.028 14.2 0.0 1 1 4e-05 0.065 13.0 0.0 3 93 131 224 130 242 0.69 Holliday junction DNA helicase RuvB P-loop domain DUF2120 PF09893.9 136 pCP020479_00053 - 410 0.042 14.0 0.2 1 2 9.5e-05 0.15 12.1 0.0 38 87 199 244 186 272 0.76 Uncharacterized protein conserved in archaea (DUF2120) DUF2120 PF09893.9 136 pCP020479_00053 - 410 0.042 14.0 0.2 2 2 2.1 3.4e+03 -2.0 0.0 66 94 365 401 335 406 0.65 Uncharacterized protein conserved in archaea (DUF2120) AAA_16 PF13191.6 170 pCP020479_00053 - 410 0.099 13.0 0.0 1 2 0.0019 3.1 8.2 0.0 24 51 159 187 145 219 0.75 AAA ATPase domain AAA_16 PF13191.6 170 pCP020479_00053 - 410 0.099 13.0 0.0 2 2 0.081 1.3e+02 2.8 0.0 127 163 210 255 193 262 0.68 AAA ATPase domain TniB PF05621.11 189 pCP020479_00053 - 410 0.19 11.1 1.1 1 3 0.11 1.8e+02 1.4 0.0 26 93 29 96 18 124 0.72 Bacterial TniB protein TniB PF05621.11 189 pCP020479_00053 - 410 0.19 11.1 1.1 2 3 0.2 3.2e+02 0.6 0.0 30 56 155 181 140 188 0.76 Bacterial TniB protein TniB PF05621.11 189 pCP020479_00053 - 410 0.19 11.1 1.1 3 3 0.0049 7.9 5.8 0.1 122 157 226 261 177 276 0.82 Bacterial TniB protein YopX PF09643.10 131 pCP020479_00054 - 125 1.5e-12 47.7 2.9 1 1 1e-16 1.9e-12 47.4 2.9 49 130 34 123 3 124 0.69 YopX protein Telomere_reg-2 PF10193.9 109 pCP020479_00056 - 214 0.13 12.7 0.6 1 2 0.0063 1.1e+02 3.3 0.1 4 67 5 71 3 84 0.79 Telomere length regulation protein Telomere_reg-2 PF10193.9 109 pCP020479_00056 - 214 0.13 12.7 0.6 2 2 0.0003 5.5 7.5 0.0 7 34 183 210 181 214 0.92 Telomere length regulation protein Snapin_Pallidin PF14712.6 90 pCP020479_00062 - 258 0.79 10.2 7.9 1 2 0.00059 11 6.6 0.4 31 71 8 48 5 63 0.77 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 pCP020479_00062 - 258 0.79 10.2 7.9 2 2 0.0006 11 6.6 2.0 13 66 204 257 199 258 0.87 Snapin/Pallidin Topoisom_bac PF01131.20 413 pCP020479_00063 - 723 3.7e-97 325.9 2.9 1 1 4.8e-100 4.8e-97 325.6 2.9 3 413 154 591 152 591 0.93 DNA topoisomerase Toprim PF01751.22 103 pCP020479_00063 - 723 1.2e-11 44.8 0.4 1 2 5.6e-14 5.6e-11 42.6 0.1 1 100 2 133 2 136 0.85 Toprim domain Toprim PF01751.22 103 pCP020479_00063 - 723 1.2e-11 44.8 0.4 2 2 5.4 5.4e+03 -2.3 0.0 61 77 497 513 457 516 0.65 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP020479_00063 - 723 2.3e-07 30.5 20.4 1 2 1e-06 0.001 18.8 4.6 2 32 619 651 618 657 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP020479_00063 - 723 2.3e-07 30.5 20.4 2 2 3.4e-06 0.0034 17.1 7.9 3 37 674 713 672 715 0.85 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP020479_00063 - 723 0.00043 20.5 0.2 1 2 0.0039 3.9 7.8 0.0 18 34 615 631 610 632 0.78 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP020479_00063 - 723 0.00043 20.5 0.2 2 2 0.00069 0.69 10.2 0.0 20 32 671 683 661 685 0.78 zinc-ribbon Zn_ribbon_SprT PF17283.2 38 pCP020479_00063 - 723 0.015 15.2 1.1 1 2 0.46 4.6e+02 0.8 0.1 7 13 621 627 614 632 0.64 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 pCP020479_00063 - 723 0.015 15.2 1.1 2 2 0.00011 0.11 12.4 0.2 4 27 672 699 669 704 0.93 SprT-like zinc ribbon domain Toprim_2 PF13155.6 90 pCP020479_00063 - 723 0.054 13.9 0.2 1 2 0.0011 1.1 9.7 0.1 37 74 91 130 83 154 0.79 Toprim-like Toprim_2 PF13155.6 90 pCP020479_00063 - 723 0.054 13.9 0.2 2 2 0.51 5.1e+02 1.2 0.0 33 58 488 513 465 516 0.78 Toprim-like Zn-ribbon_8 PF09723.10 40 pCP020479_00063 - 723 0.082 13.0 0.7 1 2 0.035 35 4.6 0.0 18 34 609 626 603 632 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP020479_00063 - 723 0.082 13.0 0.7 2 2 0.012 11 6.2 0.1 5 21 672 688 665 693 0.77 Zinc ribbon domain zinc_ribbon_4 PF13717.6 36 pCP020479_00063 - 723 0.1 12.5 2.3 1 2 0.018 18 5.3 0.2 2 12 618 628 618 629 0.85 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP020479_00063 - 723 0.1 12.5 2.3 2 2 0.011 11 6.1 0.1 4 17 674 687 672 694 0.84 zinc-ribbon domain Toprim_4 PF13662.6 89 pCP020479_00063 - 723 0.1 13.1 0.1 1 2 0.00068 0.68 10.4 0.0 49 76 89 120 69 132 0.72 Toprim domain Toprim_4 PF13662.6 89 pCP020479_00063 - 723 0.1 13.1 0.1 2 2 4.2 4.2e+03 -1.7 0.0 28 68 481 513 470 515 0.70 Toprim domain zf-ribbon_3 PF13248.6 26 pCP020479_00063 - 723 0.18 11.3 1.0 1 2 0.013 12 5.4 0.1 2 11 618 628 617 633 0.74 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP020479_00063 - 723 0.18 11.3 1.0 2 2 0.04 40 3.8 0.1 1 8 671 678 671 687 0.83 zinc-ribbon domain HTH_34 PF13601.6 80 pCP020479_00063 - 723 0.25 11.6 1.1 1 2 3.4 3.4e+03 -1.7 0.1 46 63 465 482 463 495 0.75 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP020479_00063 - 723 0.25 11.6 1.1 2 2 0.00077 0.77 10.0 0.1 32 57 524 549 519 558 0.84 Winged helix DNA-binding domain TRAF6_Z2 PF18048.1 27 pCP020479_00063 - 723 0.45 10.7 3.7 1 3 1.7 1.7e+03 -0.8 0.0 18 25 264 271 262 272 0.85 TNF receptor-associated factor 6 zinc finger 2 TRAF6_Z2 PF18048.1 27 pCP020479_00063 - 723 0.45 10.7 3.7 2 3 2 2e+03 -1.0 0.0 5 10 620 625 618 628 0.81 TNF receptor-associated factor 6 zinc finger 2 TRAF6_Z2 PF18048.1 27 pCP020479_00063 - 723 0.45 10.7 3.7 3 3 0.0012 1.1 9.4 0.4 5 13 674 682 671 684 0.89 TNF receptor-associated factor 6 zinc finger 2 Zn_Tnp_IS1 PF03811.13 35 pCP020479_00063 - 723 0.48 10.2 3.3 1 2 0.073 73 3.2 0.2 6 12 619 625 617 627 0.88 InsA N-terminal domain Zn_Tnp_IS1 PF03811.13 35 pCP020479_00063 - 723 0.48 10.2 3.3 2 2 0.0051 5.1 6.9 0.4 7 33 674 701 672 703 0.89 InsA N-terminal domain zf-HIT PF04438.16 30 pCP020479_00063 - 723 0.61 10.0 4.2 1 2 0.048 47 4.0 0.3 11 23 616 628 614 643 0.83 HIT zinc finger zf-HIT PF04438.16 30 pCP020479_00063 - 723 0.61 10.0 4.2 2 2 0.006 5.9 6.8 0.4 11 20 670 679 667 682 0.86 HIT zinc finger zf_C2H2_10 PF18414.1 26 pCP020479_00063 - 723 2.6 7.7 7.4 1 2 0.011 11 5.7 1.3 4 10 620 626 618 628 0.85 C2H2 type zinc-finger zf_C2H2_10 PF18414.1 26 pCP020479_00063 - 723 2.6 7.7 7.4 2 2 0.025 25 4.5 0.5 2 9 672 679 671 681 0.88 C2H2 type zinc-finger PIN_4 PF13638.6 131 pCP020479_00063 - 723 4 7.7 5.5 1 3 3.4 3.4e+03 -1.7 0.0 28 64 204 241 200 277 0.52 PIN domain PIN_4 PF13638.6 131 pCP020479_00063 - 723 4 7.7 5.5 2 3 0.00089 0.89 9.8 0.5 60 126 470 554 442 558 0.79 PIN domain PIN_4 PF13638.6 131 pCP020479_00063 - 723 4 7.7 5.5 3 3 9 8.9e+03 -3.1 0.1 79 91 607 619 574 620 0.47 PIN domain PADR1 PF08063.12 53 pCP020479_00063 - 723 7.7 6.4 8.1 1 2 0.0096 9.6 6.1 1.7 15 50 620 656 619 658 0.80 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP020479_00063 - 723 7.7 6.4 8.1 2 2 0.069 69 3.3 0.6 15 28 674 687 673 702 0.82 PADR1 (NUC008) domain zf-H2C2_2 PF13465.6 26 pCP020479_00063 - 723 7.8 7.1 8.1 1 2 0.068 67 4.2 0.1 9 24 613 628 609 630 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP020479_00063 - 723 7.8 7.1 8.1 2 2 0.012 12 6.5 0.7 11 24 669 682 665 683 0.82 Zinc-finger double domain CoA_transf_3 PF02515.17 368 pCP020479_00064 - 440 0.18 10.9 0.4 1 1 1.5e-05 0.28 10.3 0.4 247 299 258 315 253 351 0.76 CoA-transferase family III Tfb5 PF06331.12 68 pCP020479_00065 - 198 1.7 8.7 7.2 1 2 0.0015 26 4.9 0.9 14 61 38 88 35 91 0.81 Transcription factor TFIIH complex subunit Tfb5 Tfb5 PF06331.12 68 pCP020479_00065 - 198 1.7 8.7 7.2 2 2 0.00028 5.1 7.2 0.7 23 66 138 181 130 183 0.83 Transcription factor TFIIH complex subunit Tfb5 DUF3042 PF11240.8 54 pCP020479_00066 - 790 8.3 6.5 6.1 1 2 0.01 1.9e+02 2.2 1.4 7 26 603 622 601 625 0.89 Protein of unknown function (DUF3042) DUF3042 PF11240.8 54 pCP020479_00066 - 790 8.3 6.5 6.1 2 2 0.001 18 5.4 0.2 3 27 728 752 726 756 0.92 Protein of unknown function (DUF3042) DUF2368 PF10166.9 134 pCP020479_00067 - 106 0.59 9.7 2.9 1 2 0.16 1.5e+03 -1.2 0.1 56 77 20 40 12 67 0.70 Uncharacterised conserved protein (DUF2368) DUF2368 PF10166.9 134 pCP020479_00067 - 106 0.59 9.7 2.9 2 2 4e-05 0.35 10.5 1.0 79 99 78 98 47 101 0.78 Uncharacterised conserved protein (DUF2368) Herpes_UL73 PF03554.13 75 pCP020479_00067 - 106 2.6 8.1 10.4 1 2 0.027 2.4e+02 1.8 0.3 51 72 17 38 8 40 0.76 UL73 viral envelope glycoprotein Herpes_UL73 PF03554.13 75 pCP020479_00067 - 106 2.6 8.1 10.4 2 2 8.9e-05 0.79 9.8 4.6 36 69 68 101 53 105 0.89 UL73 viral envelope glycoprotein GLF PF03275.13 204 pCP020479_00069 - 315 0.021 14.5 1.0 1 3 0.38 2.3e+03 -1.9 0.0 134 146 77 89 37 110 0.62 UDP-galactopyranose mutase GLF PF03275.13 204 pCP020479_00069 - 315 0.021 14.5 1.0 2 3 0.26 1.6e+03 -1.4 0.0 125 158 142 175 129 218 0.74 UDP-galactopyranose mutase GLF PF03275.13 204 pCP020479_00069 - 315 0.021 14.5 1.0 3 3 3.5e-06 0.021 14.5 1.0 78 147 228 302 208 312 0.84 UDP-galactopyranose mutase HTH_57 PF18679.1 108 pCP020479_00069 - 315 0.051 13.9 0.3 1 2 0.44 2.6e+03 -1.3 0.3 45 82 142 178 110 185 0.66 ThcOx helix turn helix domain HTH_57 PF18679.1 108 pCP020479_00069 - 315 0.051 13.9 0.3 2 2 8.6e-06 0.051 13.9 0.3 9 60 256 307 253 312 0.93 ThcOx helix turn helix domain DUF349 PF03993.12 75 pCP020479_00069 - 315 3.7 7.9 13.9 1 3 0.0047 28 5.1 0.4 9 33 50 74 48 77 0.92 Domain of Unknown Function (DUF349) DUF349 PF03993.12 75 pCP020479_00069 - 315 3.7 7.9 13.9 2 3 0.031 1.9e+02 2.4 3.9 19 46 101 128 93 165 0.79 Domain of Unknown Function (DUF349) DUF349 PF03993.12 75 pCP020479_00069 - 315 3.7 7.9 13.9 3 3 0.0061 36 4.7 0.1 13 33 237 257 235 270 0.92 Domain of Unknown Function (DUF349) DUF1192 PF06698.11 58 pCP020479_00071 - 314 5.1 7.2 15.9 1 3 0.047 8.4e+02 0.1 0.4 3 24 24 45 21 55 0.74 Protein of unknown function (DUF1192) DUF1192 PF06698.11 58 pCP020479_00071 - 314 5.1 7.2 15.9 2 3 8.9e-06 0.16 12.0 0.4 13 50 136 173 124 175 0.80 Protein of unknown function (DUF1192) DUF1192 PF06698.11 58 pCP020479_00071 - 314 5.1 7.2 15.9 3 3 0.012 2.1e+02 2.0 3.2 14 51 240 277 226 278 0.79 Protein of unknown function (DUF1192) Peptidase_C101 PF16218.5 265 pCP020479_00072 - 187 0.00027 20.3 6.7 1 2 4.5e-08 0.00027 20.3 6.7 87 198 40 150 9 155 0.85 Peptidase family C101 Peptidase_C101 PF16218.5 265 pCP020479_00072 - 187 0.00027 20.3 6.7 2 2 0.0096 58 2.8 0.5 102 147 139 179 119 183 0.74 Peptidase family C101 HTH_45 PF14947.6 77 pCP020479_00072 - 187 0.029 14.3 1.2 1 1 1e-05 0.063 13.3 1.0 11 48 8 44 6 74 0.83 Winged helix-turn-helix CLAMP PF14769.6 99 pCP020479_00072 - 187 0.086 13.3 4.7 1 2 0.026 1.5e+02 2.9 0.1 41 73 67 100 31 104 0.74 Flagellar C1a complex subunit C1a-32 CLAMP PF14769.6 99 pCP020479_00072 - 187 0.086 13.3 4.7 2 2 4.3e-05 0.26 11.8 1.2 4 65 110 173 107 180 0.80 Flagellar C1a complex subunit C1a-32 DUF2232 PF09991.9 290 pCP020479_00074 - 80 0.046 12.9 0.4 1 1 3e-06 0.053 12.7 0.4 99 156 6 60 1 65 0.68 Predicted membrane protein (DUF2232) Thioredoxin_2 PF13098.6 109 pCP020479_00075 - 289 5.6e-06 26.8 2.9 1 2 1.5 4.6e+03 -1.9 0.0 27 47 74 93 49 118 0.62 Thioredoxin-like domain Thioredoxin_2 PF13098.6 109 pCP020479_00075 - 289 5.6e-06 26.8 2.9 2 2 2.9e-09 8.6e-06 26.2 1.5 3 76 177 273 175 285 0.67 Thioredoxin-like domain Thioredoxin_4 PF13462.6 166 pCP020479_00075 - 289 0.00015 22.0 2.1 1 2 0.12 3.6e+02 1.2 0.1 65 122 11 88 6 110 0.43 Thioredoxin Thioredoxin_4 PF13462.6 166 pCP020479_00075 - 289 0.00015 22.0 2.1 2 2 2e-07 0.0006 20.0 0.2 16 103 182 264 174 278 0.74 Thioredoxin Glutaredoxin PF00462.24 60 pCP020479_00075 - 289 0.0022 18.2 0.3 1 1 3.1e-06 0.0094 16.2 0.3 3 43 185 230 183 237 0.82 Glutaredoxin Thioredoxin_3 PF13192.6 76 pCP020479_00075 - 289 0.0074 16.3 0.1 1 2 1.8e-05 0.055 13.5 0.0 5 42 185 224 181 229 0.86 Thioredoxin domain Thioredoxin_3 PF13192.6 76 pCP020479_00075 - 289 0.0074 16.3 0.1 2 2 0.62 1.8e+03 -1.0 0.0 34 51 264 282 254 283 0.73 Thioredoxin domain HypD PF01924.16 351 pCP020479_00075 - 289 0.061 12.4 0.0 1 1 3.2e-05 0.096 11.7 0.0 45 108 182 246 179 262 0.92 Hydrogenase formation hypA family Aminopep PF10023.9 322 pCP020479_00075 - 289 3.2 7.0 7.8 1 2 0.051 1.5e+02 1.5 0.9 197 297 23 119 10 148 0.58 Putative aminopeptidase Aminopep PF10023.9 322 pCP020479_00075 - 289 3.2 7.0 7.8 2 2 0.00019 0.56 9.5 1.4 249 311 215 277 117 282 0.77 Putative aminopeptidase 4HFCP_synth PF04476.13 228 pCP020479_00077 - 215 0.005 16.6 0.1 1 1 2.6e-06 0.0092 15.7 0.1 93 176 129 211 121 213 0.89 4-HFC-P synthase Herpes_U30 PF04523.13 917 pCP020479_00077 - 215 0.044 11.7 3.7 1 1 1.4e-05 0.051 11.5 3.7 723 852 19 154 8 180 0.81 Herpes virus tegument protein U30 TT_ORF1 PF02956.14 525 pCP020479_00077 - 215 0.14 10.8 2.1 1 1 4e-05 0.14 10.8 2.1 248 360 10 136 1 204 0.76 TT viral orf 1 DUF4776 PF16003.5 503 pCP020479_00077 - 215 3.4 6.6 9.6 1 1 0.0011 3.8 6.4 9.0 132 238 23 126 5 151 0.58 Domain of unknown function (DUF4776) LMBR1 PF04791.16 510 pCP020479_00077 - 215 4.3 6.1 6.3 1 1 0.0013 4.7 6.0 6.3 193 296 32 147 6 210 0.60 LMBR1-like membrane protein Bacillus_HBL PF05791.11 177 pCP020479_00078 - 109 0.03 14.2 1.8 1 1 8.9e-06 0.04 13.8 1.8 84 161 28 108 24 109 0.82 Bacillus haemolytic enterotoxin (HBL) Tape_meas_lam_C PF09718.10 76 pCP020479_00078 - 109 0.035 14.2 0.0 1 1 1.1e-05 0.05 13.7 0.0 21 60 16 55 12 65 0.87 Lambda phage tail tape-measure protein (Tape_meas_lam_C) Prefoldin_3 PF13758.6 99 pCP020479_00078 - 109 0.042 13.9 1.1 1 1 1.2e-05 0.055 13.5 1.1 17 63 50 100 32 108 0.65 Prefoldin subunit Erf4 PF10256.9 116 pCP020479_00078 - 109 0.09 12.9 0.9 1 1 0.00024 1.1 9.4 0.5 67 102 17 54 2 86 0.80 Golgin subfamily A member 7/ERF4 family KAR PF15222.6 103 pCP020479_00080 - 148 0.037 14.3 2.6 1 2 0.00085 15 5.9 0.1 9 44 11 48 4 72 0.78 Kidney androgen-regulated KAR PF15222.6 103 pCP020479_00080 - 148 0.037 14.3 2.6 2 2 0.00011 2 8.8 0.5 18 66 91 139 78 145 0.72 Kidney androgen-regulated LRAT PF04970.13 127 pCP020479_00081 - 75 0.035 14.4 0.0 1 1 2e-06 0.037 14.3 0.0 2 38 10 46 9 72 0.77 Lecithin retinol acyltransferase SNase PF00565.17 108 pCP020479_00082 - 200 2.2e-26 92.4 0.3 1 1 1.8e-30 3.2e-26 91.9 0.3 1 108 94 187 94 187 0.96 Staphylococcal nuclease homologue HipA_C PF07804.12 212 pCP020479_00084 - 450 1.5e-07 31.3 0.2 1 1 6.7e-11 6e-07 29.4 0.2 18 164 166 308 153 406 0.72 HipA-like C-terminal domain PI3_PI4_kinase PF00454.27 250 pCP020479_00084 - 450 0.17 11.7 2.3 1 1 4.8e-05 0.43 10.3 2.3 142 195 262 319 161 372 0.73 Phosphatidylinositol 3- and 4-kinase DUF751 PF05421.11 60 pCP020479_00085 - 93 0.0064 17.2 1.2 1 1 1.7e-06 0.0099 16.6 1.2 3 48 26 73 25 77 0.79 Protein of unknown function (DUF751) ThrE PF06738.12 241 pCP020479_00085 - 93 0.012 15.1 0.0 1 1 2.2e-06 0.013 14.8 0.0 155 211 27 81 14 84 0.75 Putative threonine/serine exporter Tom22 PF04281.13 138 pCP020479_00085 - 93 0.046 13.5 0.1 1 1 1.1e-05 0.067 13.0 0.0 81 126 42 89 29 93 0.77 Mitochondrial import receptor subunit Tom22 Cadherin_C_2 PF16492.5 85 pCP020479_00086 - 46 0.11 13.3 0.0 1 1 5.9e-06 0.11 13.3 0.0 1 25 3 27 3 44 0.83 Cadherin cytoplasmic C-terminal RSN1_TM PF13967.6 156 pCP020479_00088 - 60 0.039 13.7 0.0 1 1 4.8e-06 0.043 13.6 0.0 8 43 12 46 5 57 0.77 Late exocytosis, associated with Golgi transport Chordopox_A13L PF05961.11 69 pCP020479_00088 - 60 0.1 12.8 0.6 1 1 1.4e-05 0.13 12.5 0.6 2 42 6 46 5 58 0.73 Chordopoxvirus A13L protein HipA_C PF07804.12 212 pCP020479_00089 - 456 2.2e-32 112.5 0.3 1 1 2e-36 3.7e-32 111.8 0.3 1 188 126 321 126 346 0.83 HipA-like C-terminal domain Fic PF02661.18 97 pCP020479_00090 - 247 1.1e-18 67.9 0.7 1 2 1 1.8e+04 -3.4 0.1 68 79 23 34 6 35 0.64 Fic/DOC family Fic PF02661.18 97 pCP020479_00090 - 247 1.1e-18 67.9 0.7 2 2 1.2e-22 2.1e-18 67.0 0.1 1 93 87 176 87 179 0.95 Fic/DOC family NPV_P10 PF05531.12 75 pCP020479_00091 - 99 0.034 14.6 0.3 1 1 1e-05 0.046 14.2 0.3 31 67 32 66 10 77 0.81 Nucleopolyhedrovirus P10 protein DUF1246 PF06849.12 122 pCP020479_00091 - 99 0.092 12.7 0.0 1 1 2.5e-05 0.11 12.4 0.0 24 83 21 85 16 94 0.84 Protein of unknown function (DUF1246) DivIC PF04977.15 80 pCP020479_00091 - 99 0.1 12.4 1.7 1 1 3.1e-05 0.14 11.9 1.7 27 77 41 92 13 95 0.67 Septum formation initiator HALZ PF02183.18 43 pCP020479_00091 - 99 0.25 11.6 7.0 1 2 8.3e-05 0.37 11.0 2.7 16 40 42 66 41 69 0.79 Homeobox associated leucine zipper HALZ PF02183.18 43 pCP020479_00091 - 99 0.25 11.6 7.0 2 2 0.0014 6.2 7.1 2.1 9 29 56 76 55 88 0.86 Homeobox associated leucine zipper TraG-D_C PF12696.7 126 pCP020479_00092 - 611 4.2e-10 39.7 0.1 1 2 3.3 1e+04 -3.5 0.0 44 78 229 263 228 264 0.70 TraM recognition site of TraD and TraG TraG-D_C PF12696.7 126 pCP020479_00092 - 611 4.2e-10 39.7 0.1 2 2 3.3e-13 9.7e-10 38.5 0.0 1 125 419 541 419 542 0.87 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP020479_00092 - 611 5.1e-06 25.7 0.3 1 3 3.3e-06 0.01 14.8 0.1 9 54 126 171 119 189 0.88 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP020479_00092 - 611 5.1e-06 25.7 0.3 2 3 0.62 1.9e+03 -2.5 0.0 104 132 226 254 215 284 0.63 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP020479_00092 - 611 5.1e-06 25.7 0.3 3 3 0.00041 1.2 7.9 0.0 216 367 392 542 367 557 0.71 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP020479_00092 - 611 6.5e-06 26.4 0.2 1 1 5.8e-09 1.7e-05 25.0 0.2 13 129 123 247 107 326 0.67 Helicase HerA, central domain AAA_10 PF12846.7 362 pCP020479_00092 - 611 9.1e-06 24.8 0.0 1 1 5.6e-09 1.7e-05 24.0 0.0 19 94 130 209 122 267 0.80 AAA-like domain DUF853 PF05872.12 504 pCP020479_00092 - 611 0.0066 15.1 0.0 1 1 3.4e-06 0.01 14.5 0.0 5 59 116 170 112 193 0.91 Bacterial protein of unknown function (DUF853) PAPS_reduct PF01507.19 174 pCP020479_00092 - 611 0.02 14.9 0.1 1 1 1.6e-05 0.049 13.7 0.1 11 72 454 522 452 568 0.79 Phosphoadenosine phosphosulfate reductase family CSM2 PF16834.5 200 pCP020479_00093 - 173 0.031 13.9 1.4 1 2 0.25 1.5e+03 -1.4 0.1 152 175 16 39 8 62 0.52 Shu complex component Csm2, DNA-binding CSM2 PF16834.5 200 pCP020479_00093 - 173 0.031 13.9 1.4 2 2 6.2e-06 0.037 13.7 0.2 70 122 118 170 106 173 0.69 Shu complex component Csm2, DNA-binding Ribonuc_red_lgC PF02867.15 524 pCP020479_00093 - 173 0.057 11.9 0.5 1 2 0.0046 28 3.1 0.1 136 189 12 65 4 79 0.81 Ribonucleotide reductase, barrel domain Ribonuc_red_lgC PF02867.15 524 pCP020479_00093 - 173 0.057 11.9 0.5 2 2 0.00024 1.4 7.4 0.0 275 304 137 166 113 171 0.80 Ribonucleotide reductase, barrel domain eIF-5_eIF-2B PF01873.17 117 pCP020479_00093 - 173 0.17 11.7 2.0 1 2 2.4e-05 0.15 12.0 0.5 43 85 17 60 10 65 0.89 Domain found in IF2B/IF5 eIF-5_eIF-2B PF01873.17 117 pCP020479_00093 - 173 0.17 11.7 2.0 2 2 0.95 5.7e+03 -2.8 0.0 68 81 120 133 113 152 0.65 Domain found in IF2B/IF5 RHH_7 PF16777.5 74 pCP020480_00001 - 185 0.11 12.9 6.6 1 2 0.021 1.2e+02 3.1 0.1 36 59 5 28 2 39 0.86 Transcriptional regulator, RHH-like, CopG RHH_7 PF16777.5 74 pCP020480_00001 - 185 0.11 12.9 6.6 2 2 5.3e-05 0.32 11.4 2.2 24 65 58 100 52 107 0.85 Transcriptional regulator, RHH-like, CopG TMEM95 PF15203.6 151 pCP020480_00001 - 185 0.12 12.0 2.6 1 2 1.7e-05 0.099 12.3 0.5 26 81 44 105 18 112 0.71 TMEM95 family TMEM95 PF15203.6 151 pCP020480_00001 - 185 0.12 12.0 2.6 2 2 0.21 1.2e+03 -1.0 0.1 9 42 130 163 125 174 0.71 TMEM95 family pRN1_helical PF13010.6 136 pCP020480_00001 - 185 3.7 7.5 9.1 1 2 0.0004 2.4 8.1 6.5 4 62 8 73 5 84 0.80 Primase helical domain pRN1_helical PF13010.6 136 pCP020480_00001 - 185 3.7 7.5 9.1 2 2 0.21 1.2e+03 -0.7 0.1 38 63 115 140 73 157 0.57 Primase helical domain Relaxase PF03432.14 242 pCP020480_00002 - 554 4.2e-07 29.8 1.0 1 3 0.07 1.3e+03 -1.2 0.8 125 176 57 91 37 129 0.48 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP020480_00002 - 554 4.2e-07 29.8 1.0 2 3 2.4e-11 4.2e-07 29.8 1.0 32 170 141 269 108 286 0.79 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP020480_00002 - 554 4.2e-07 29.8 1.0 3 3 0.03 5.4e+02 0.0 0.9 131 164 415 452 360 487 0.73 Relaxase/Mobilisation nuclease domain DUF1673 PF07895.11 230 pCP020480_00003 - 151 0.0051 16.5 3.4 1 2 3.1e-06 0.0051 16.5 3.4 152 227 18 93 1 94 0.74 Protein of unknown function (DUF1673) DUF1673 PF07895.11 230 pCP020480_00003 - 151 0.0051 16.5 3.4 2 2 0.03 49 3.5 2.4 156 212 92 147 88 149 0.58 Protein of unknown function (DUF1673) DUF782 PF05614.11 104 pCP020480_00003 - 151 0.0068 16.8 0.1 1 1 6.7e-06 0.011 16.1 0.1 8 38 16 46 13 83 0.77 Circovirus protein of unknown function (DUF782) MCU PF04678.13 176 pCP020480_00003 - 151 0.047 13.8 0.3 1 1 4.3e-05 0.07 13.2 0.3 86 145 47 107 37 124 0.83 Mitochondrial calcium uniporter Acyl_transf_3 PF01757.22 340 pCP020480_00003 - 151 0.074 12.1 5.8 1 1 0.0001 0.16 11.0 6.0 209 329 6 133 4 142 0.70 Acyltransferase family Adeno_terminal PF02459.15 557 pCP020480_00003 - 151 0.097 11.0 0.5 1 1 6.7e-05 0.11 10.9 0.5 164 229 68 134 44 148 0.84 Adenoviral DNA terminal protein DUF2663 PF10864.8 127 pCP020480_00003 - 151 0.14 12.6 12.1 1 2 0.0028 4.6 7.7 2.5 9 80 6 78 1 85 0.55 Protein of unknown function (DUF2663) DUF2663 PF10864.8 127 pCP020480_00003 - 151 0.14 12.6 12.1 2 2 0.00033 0.54 10.7 2.7 25 79 88 147 74 150 0.67 Protein of unknown function (DUF2663) Sugarporin_N PF11471.8 55 pCP020480_00003 - 151 0.15 12.0 0.2 1 2 0.00044 0.72 9.9 0.1 6 30 23 48 21 48 0.94 Maltoporin periplasmic N-terminal extension Sugarporin_N PF11471.8 55 pCP020480_00003 - 151 0.15 12.0 0.2 2 2 0.99 1.6e+03 -0.9 0.0 6 24 58 76 52 81 0.73 Maltoporin periplasmic N-terminal extension DUF3611 PF12263.8 177 pCP020480_00003 - 151 0.46 10.4 6.6 1 2 0.00017 0.28 11.1 2.5 12 80 11 78 3 89 0.81 Protein of unknown function (DUF3611) DUF3611 PF12263.8 177 pCP020480_00003 - 151 0.46 10.4 6.6 2 2 0.14 2.3e+02 1.6 0.1 27 74 89 136 82 145 0.55 Protein of unknown function (DUF3611) ECF_trnsprt PF12822.7 172 pCP020480_00003 - 151 2 8.5 8.7 1 2 0.0077 13 5.9 2.0 94 159 6 67 3 72 0.74 ECF transporter, substrate-specific component ECF_trnsprt PF12822.7 172 pCP020480_00003 - 151 2 8.5 8.7 2 2 0.011 19 5.3 0.9 82 130 92 140 81 150 0.66 ECF transporter, substrate-specific component E1-E2_ATPase PF00122.20 181 pCP020480_00003 - 151 3.6 7.1 4.3 1 3 0.34 5.5e+02 -0.0 0.1 113 136 11 34 3 41 0.75 E1-E2 ATPase E1-E2_ATPase PF00122.20 181 pCP020480_00003 - 151 3.6 7.1 4.3 2 3 0.0045 7.4 6.1 0.5 114 155 45 86 28 99 0.77 E1-E2 ATPase E1-E2_ATPase PF00122.20 181 pCP020480_00003 - 151 3.6 7.1 4.3 3 3 0.16 2.6e+02 1.0 0.1 103 143 106 146 95 150 0.78 E1-E2 ATPase Bac_export_2 PF01312.19 330 pCP020480_00003 - 151 3.9 6.6 6.8 1 2 0.18 2.9e+02 0.5 0.5 29 59 18 49 11 73 0.36 FlhB HrpN YscU SpaS Family Bac_export_2 PF01312.19 330 pCP020480_00003 - 151 3.9 6.6 6.8 2 2 0.00042 0.69 9.1 1.0 124 190 77 142 74 144 0.87 FlhB HrpN YscU SpaS Family DHHC PF01529.20 134 pCP020480_00004 - 98 3.4 7.8 8.5 1 2 9.9e-05 1.8 8.7 2.9 79 122 6 49 1 58 0.79 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP020480_00004 - 98 3.4 7.8 8.5 2 2 0.004 71 3.5 7.8 55 119 26 87 23 97 0.49 DHHC palmitoyltransferase AAA_31 PF13614.6 177 pCP020480_00008 - 219 1.9e-11 44.2 4.9 1 2 4.5e-14 6.7e-11 42.4 2.8 2 74 2 85 1 158 0.71 AAA domain AAA_31 PF13614.6 177 pCP020480_00008 - 219 1.9e-11 44.2 4.9 2 2 0.37 5.5e+02 0.3 0.6 107 121 143 157 114 217 0.60 AAA domain MipZ PF09140.11 262 pCP020480_00008 - 219 2.6e-11 43.3 1.7 1 2 2.2e-09 3.3e-06 26.6 1.0 2 145 3 133 2 164 0.72 ATPase MipZ MipZ PF09140.11 262 pCP020480_00008 - 219 2.6e-11 43.3 1.7 2 2 0.0039 5.8 6.1 0.0 213 258 174 214 132 217 0.88 ATPase MipZ CbiA PF01656.23 128 pCP020480_00008 - 219 4.3e-09 36.5 0.1 1 1 4.3e-12 6.4e-09 35.9 0.1 5 110 8 171 4 190 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 305 pCP020480_00008 - 219 0.00014 21.2 0.4 1 2 5.4e-07 0.00081 18.7 0.0 8 46 9 47 1 75 0.87 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 pCP020480_00008 - 219 0.00014 21.2 0.4 2 2 0.26 3.8e+02 0.0 0.5 139 180 117 158 110 214 0.61 Anion-transporting ATPase VirC1 PF07015.11 231 pCP020480_00008 - 219 0.0011 18.3 0.1 1 2 0.0012 1.7 7.9 0.0 1 40 1 40 1 58 0.86 VirC1 protein VirC1 PF07015.11 231 pCP020480_00008 - 219 0.0011 18.3 0.1 2 2 0.00057 0.85 8.9 0.0 87 152 83 149 67 214 0.75 VirC1 protein ABC2_membrane_3 PF12698.7 345 pCP020480_00008 - 219 0.0019 17.4 0.9 1 1 1.4e-06 0.0021 17.2 0.9 21 128 19 138 13 213 0.62 ABC-2 family transporter protein AAA_24 PF13479.6 197 pCP020480_00008 - 219 0.0035 17.1 1.2 1 2 4.1e-06 0.0061 16.3 0.1 11 73 11 87 9 91 0.75 AAA domain AAA_24 PF13479.6 197 pCP020480_00008 - 219 0.0035 17.1 1.2 2 2 1.5 2.2e+03 -1.9 0.1 31 58 185 213 158 217 0.62 AAA domain ParA PF10609.9 246 pCP020480_00008 - 219 0.004 16.7 0.0 1 1 4.8e-06 0.0072 15.8 0.0 6 41 4 39 1 58 0.85 NUBPL iron-transfer P-loop NTPase ATP_bind_1 PF03029.17 241 pCP020480_00008 - 219 0.019 14.8 0.1 1 2 4.5e-05 0.068 13.0 0.0 6 34 12 40 10 49 0.91 Conserved hypothetical ATP binding protein ATP_bind_1 PF03029.17 241 pCP020480_00008 - 219 0.019 14.8 0.1 2 2 0.91 1.4e+03 -1.1 0.0 197 197 90 90 41 153 0.53 Conserved hypothetical ATP binding protein CBP_BcsQ PF06564.12 234 pCP020480_00008 - 219 0.14 11.6 0.0 1 2 0.00038 0.57 9.6 0.0 1 39 1 39 1 56 0.88 Cellulose biosynthesis protein BcsQ CBP_BcsQ PF06564.12 234 pCP020480_00008 - 219 0.14 11.6 0.0 2 2 0.5 7.5e+02 -0.6 0.0 154 176 129 152 98 181 0.69 Cellulose biosynthesis protein BcsQ DUF2139 PF09910.9 340 pCP020480_00008 - 219 0.14 11.3 0.0 1 1 0.0003 0.45 9.6 0.0 170 251 51 128 2 138 0.82 Uncharacterized protein conserved in archaea (DUF2139) AAA_14 PF13173.6 131 pCP020480_00008 - 219 0.19 11.7 7.5 1 3 3.4e-05 0.051 13.6 1.4 13 71 13 86 11 103 0.67 AAA domain AAA_14 PF13173.6 131 pCP020480_00008 - 219 0.19 11.7 7.5 2 3 0.92 1.4e+03 -0.7 0.1 66 70 140 144 93 183 0.57 AAA domain AAA_14 PF13173.6 131 pCP020480_00008 - 219 0.19 11.7 7.5 3 3 0.33 5e+02 0.7 0.1 20 58 171 213 167 218 0.65 AAA domain Fic PF02661.18 97 pCP020480_00009 - 234 3.2e-15 56.8 0.1 1 1 1.2e-18 7.3e-15 55.6 0.1 2 96 53 157 52 158 0.78 Fic/DOC family IL22 PF14565.6 139 pCP020480_00009 - 234 0.018 15.3 0.9 1 3 0.011 66 3.8 0.0 9 72 5 77 2 93 0.70 Interleukin 22 IL-10-related T-cell-derived-inducible factor IL22 PF14565.6 139 pCP020480_00009 - 234 0.018 15.3 0.9 2 3 0.00025 1.5 9.1 0.0 54 103 104 153 100 174 0.90 Interleukin 22 IL-10-related T-cell-derived-inducible factor IL22 PF14565.6 139 pCP020480_00009 - 234 0.018 15.3 0.9 3 3 0.2 1.2e+03 -0.3 0.1 100 115 203 218 150 232 0.59 Interleukin 22 IL-10-related T-cell-derived-inducible factor IZUMO PF15005.6 143 pCP020480_00009 - 234 1.1 9.8 7.3 1 3 0.00028 1.7 9.2 0.1 30 90 27 87 8 92 0.89 Izumo sperm-egg fusion, Ig domain-associated IZUMO PF15005.6 143 pCP020480_00009 - 234 1.1 9.8 7.3 2 3 0.13 8e+02 0.5 0.1 88 105 114 131 101 145 0.54 Izumo sperm-egg fusion, Ig domain-associated IZUMO PF15005.6 143 pCP020480_00009 - 234 1.1 9.8 7.3 3 3 0.032 1.9e+02 2.5 0.6 44 80 181 217 163 227 0.67 Izumo sperm-egg fusion, Ig domain-associated CRISPR_Cas2 PF09827.9 76 pCP020480_00011 - 140 0.00069 19.8 1.5 1 2 3.7e-07 0.0022 18.1 0.0 5 54 7 67 3 83 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP020480_00011 - 140 0.00069 19.8 1.5 2 2 0.15 8.8e+02 0.2 0.3 41 54 111 124 79 136 0.66 CRISPR associated protein Cas2 RRM_1 PF00076.22 70 pCP020480_00011 - 140 0.0021 17.8 0.5 1 2 1.4e-06 0.0083 15.9 0.1 6 62 7 68 5 70 0.89 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_1 PF00076.22 70 pCP020480_00011 - 140 0.0021 17.8 0.5 2 2 0.22 1.3e+03 -0.7 0.0 4 18 104 118 104 132 0.80 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LPD11 PF18824.1 69 pCP020480_00011 - 140 0.085 12.9 1.8 1 3 0.34 2e+03 -1.1 0.0 28 50 10 32 2 33 0.77 Large polyvalent protein-associated domain 11 LPD11 PF18824.1 69 pCP020480_00011 - 140 0.085 12.9 1.8 2 3 0.84 5e+03 -2.3 0.0 61 67 57 63 48 74 0.54 Large polyvalent protein-associated domain 11 LPD11 PF18824.1 69 pCP020480_00011 - 140 0.085 12.9 1.8 3 3 2.9e-05 0.17 12.0 0.4 25 55 102 132 86 137 0.88 Large polyvalent protein-associated domain 11 YopX PF09643.10 131 pCP020480_00013 - 281 1.4e-08 34.8 0.5 1 2 0.056 1e+03 -0.3 0.2 20 77 57 120 39 142 0.58 YopX protein YopX PF09643.10 131 pCP020480_00013 - 281 1.4e-08 34.8 0.5 2 2 8e-13 1.4e-08 34.8 0.5 47 130 159 235 116 236 0.79 YopX protein Topoisom_bac PF01131.20 413 pCP020480_00014 - 723 3.8e-97 325.9 2.9 1 1 4.8e-100 4.8e-97 325.6 2.9 3 413 154 591 152 591 0.93 DNA topoisomerase Toprim PF01751.22 103 pCP020480_00014 - 723 6.8e-12 45.5 0.3 1 2 3.4e-14 3.4e-11 43.3 0.1 1 101 2 134 2 136 0.86 Toprim domain Toprim PF01751.22 103 pCP020480_00014 - 723 6.8e-12 45.5 0.3 2 2 5.4 5.4e+03 -2.3 0.0 61 77 497 513 457 516 0.65 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP020480_00014 - 723 2.3e-07 30.5 20.4 1 2 1e-06 0.001 18.8 4.6 2 32 619 651 618 657 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP020480_00014 - 723 2.3e-07 30.5 20.4 2 2 3.4e-06 0.0034 17.1 7.9 3 37 674 713 672 715 0.85 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP020480_00014 - 723 0.00043 20.5 0.2 1 2 0.0039 3.9 7.8 0.0 18 34 615 631 610 632 0.78 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP020480_00014 - 723 0.00043 20.5 0.2 2 2 0.00069 0.69 10.2 0.0 20 32 671 683 661 685 0.78 zinc-ribbon Zn_ribbon_SprT PF17283.2 38 pCP020480_00014 - 723 0.014 15.2 1.1 1 2 0.46 4.6e+02 0.8 0.1 7 13 621 627 614 632 0.64 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 pCP020480_00014 - 723 0.014 15.2 1.1 2 2 0.00011 0.11 12.4 0.2 4 27 672 699 669 704 0.93 SprT-like zinc ribbon domain Toprim_2 PF13155.6 90 pCP020480_00014 - 723 0.034 14.6 0.2 1 2 0.00069 0.68 10.4 0.1 37 75 91 131 83 154 0.80 Toprim-like Toprim_2 PF13155.6 90 pCP020480_00014 - 723 0.034 14.6 0.2 2 2 0.51 5.1e+02 1.2 0.0 33 58 488 513 465 516 0.78 Toprim-like Zn-ribbon_8 PF09723.10 40 pCP020480_00014 - 723 0.082 13.0 0.7 1 2 0.035 35 4.6 0.0 18 34 609 626 603 632 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP020480_00014 - 723 0.082 13.0 0.7 2 2 0.012 11 6.2 0.1 5 21 672 688 665 693 0.77 Zinc ribbon domain zinc_ribbon_4 PF13717.6 36 pCP020480_00014 - 723 0.1 12.5 2.3 1 2 0.018 18 5.3 0.2 2 12 618 628 618 629 0.85 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP020480_00014 - 723 0.1 12.5 2.3 2 2 0.011 11 6.1 0.1 4 17 674 687 672 694 0.84 zinc-ribbon domain Toprim_4 PF13662.6 89 pCP020480_00014 - 723 0.12 12.8 0.1 1 2 0.00079 0.79 10.2 0.0 49 76 89 120 69 132 0.71 Toprim domain Toprim_4 PF13662.6 89 pCP020480_00014 - 723 0.12 12.8 0.1 2 2 4.2 4.2e+03 -1.7 0.0 28 68 481 513 470 515 0.70 Toprim domain zf-ribbon_3 PF13248.6 26 pCP020480_00014 - 723 0.18 11.3 1.0 1 2 0.013 12 5.4 0.1 2 11 618 628 617 633 0.74 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP020480_00014 - 723 0.18 11.3 1.0 2 2 0.04 40 3.8 0.1 1 8 671 678 671 687 0.83 zinc-ribbon domain HTH_34 PF13601.6 80 pCP020480_00014 - 723 0.25 11.6 1.1 1 2 3.4 3.4e+03 -1.7 0.1 46 63 465 482 463 495 0.75 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP020480_00014 - 723 0.25 11.6 1.1 2 2 0.00077 0.77 10.0 0.1 32 57 524 549 519 558 0.84 Winged helix DNA-binding domain TRAF6_Z2 PF18048.1 27 pCP020480_00014 - 723 0.45 10.6 3.7 1 3 1.7 1.7e+03 -0.8 0.0 18 25 264 271 262 272 0.85 TNF receptor-associated factor 6 zinc finger 2 TRAF6_Z2 PF18048.1 27 pCP020480_00014 - 723 0.45 10.6 3.7 2 3 2 2e+03 -1.0 0.0 5 10 620 625 618 628 0.81 TNF receptor-associated factor 6 zinc finger 2 TRAF6_Z2 PF18048.1 27 pCP020480_00014 - 723 0.45 10.6 3.7 3 3 0.0012 1.1 9.4 0.4 5 13 674 682 671 684 0.89 TNF receptor-associated factor 6 zinc finger 2 Zn_Tnp_IS1 PF03811.13 35 pCP020480_00014 - 723 0.48 10.2 3.3 1 2 0.073 73 3.2 0.2 6 12 619 625 617 627 0.88 InsA N-terminal domain Zn_Tnp_IS1 PF03811.13 35 pCP020480_00014 - 723 0.48 10.2 3.3 2 2 0.0051 5.1 6.9 0.4 7 33 674 701 672 703 0.89 InsA N-terminal domain zf-HIT PF04438.16 30 pCP020480_00014 - 723 0.61 10.0 4.2 1 2 0.048 47 4.0 0.3 11 23 616 628 614 643 0.83 HIT zinc finger zf-HIT PF04438.16 30 pCP020480_00014 - 723 0.61 10.0 4.2 2 2 0.006 5.9 6.8 0.4 11 20 670 679 667 682 0.86 HIT zinc finger zf_C2H2_10 PF18414.1 26 pCP020480_00014 - 723 2.6 7.7 7.4 1 2 0.011 11 5.7 1.3 4 10 620 626 618 628 0.85 C2H2 type zinc-finger zf_C2H2_10 PF18414.1 26 pCP020480_00014 - 723 2.6 7.7 7.4 2 2 0.025 25 4.5 0.5 2 9 672 679 671 681 0.88 C2H2 type zinc-finger PIN_4 PF13638.6 131 pCP020480_00014 - 723 4.1 7.7 5.5 1 3 3.4 3.4e+03 -1.7 0.0 28 64 204 241 200 277 0.52 PIN domain PIN_4 PF13638.6 131 pCP020480_00014 - 723 4.1 7.7 5.5 2 3 0.00089 0.89 9.8 0.5 60 126 470 554 442 558 0.79 PIN domain PIN_4 PF13638.6 131 pCP020480_00014 - 723 4.1 7.7 5.5 3 3 9 8.9e+03 -3.1 0.1 79 91 607 619 574 620 0.47 PIN domain PADR1 PF08063.12 53 pCP020480_00014 - 723 7.6 6.4 8.1 1 2 0.0096 9.6 6.1 1.7 15 50 620 656 619 658 0.80 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP020480_00014 - 723 7.6 6.4 8.1 2 2 0.069 69 3.3 0.6 15 28 674 687 673 702 0.82 PADR1 (NUC008) domain zf-H2C2_2 PF13465.6 26 pCP020480_00014 - 723 7.9 7.1 8.1 1 2 0.068 67 4.2 0.1 9 24 613 628 609 630 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP020480_00014 - 723 7.9 7.1 8.1 2 2 0.012 12 6.5 0.7 11 24 669 682 665 683 0.82 Zinc-finger double domain Latarcin PF10279.9 81 pCP020480_00016 - 296 0.016 15.6 1.6 1 1 0.00029 0.66 10.4 1.6 22 76 56 184 14 189 0.78 Latarcin precursor Lipase_GDSL PF00657.22 200 pCP020480_00016 - 296 0.033 14.2 1.1 1 1 3e-05 0.067 13.2 0.9 48 131 27 170 15 219 0.75 GDSL-like Lipase/Acylhydrolase T3SS_basalb_I PF17001.5 96 pCP020480_00016 - 296 0.078 13.6 4.2 1 2 0.00077 1.7 9.3 0.5 3 62 20 91 18 107 0.70 Type III secretion basal body protein I, YscI, HrpB, PscI T3SS_basalb_I PF17001.5 96 pCP020480_00016 - 296 0.078 13.6 4.2 2 2 0.019 44 4.8 0.1 2 43 158 208 157 219 0.55 Type III secretion basal body protein I, YscI, HrpB, PscI Cor1 PF04803.12 132 pCP020480_00016 - 296 0.15 12.3 22.3 1 3 0.0051 11 6.2 4.9 5 53 3 51 1 86 0.76 Cor1/Xlr/Xmr conserved region Cor1 PF04803.12 132 pCP020480_00016 - 296 0.15 12.3 22.3 2 3 6.9e-05 0.15 12.2 6.2 45 124 97 179 82 182 0.83 Cor1/Xlr/Xmr conserved region Cor1 PF04803.12 132 pCP020480_00016 - 296 0.15 12.3 22.3 3 3 0.095 2.1e+02 2.1 0.5 7 40 178 211 172 218 0.61 Cor1/Xlr/Xmr conserved region DUF1451 PF07295.11 147 pCP020480_00016 - 296 0.25 11.3 8.8 1 3 0.05 1.1e+02 2.8 0.4 35 89 22 76 2 88 0.75 Zinc-ribbon containing domain DUF1451 PF07295.11 147 pCP020480_00016 - 296 0.25 11.3 8.8 2 3 0.29 6.4e+02 0.3 0.1 9 45 62 96 56 121 0.67 Zinc-ribbon containing domain DUF1451 PF07295.11 147 pCP020480_00016 - 296 0.25 11.3 8.8 3 3 8.8e-05 0.2 11.7 2.5 6 100 118 205 111 215 0.87 Zinc-ribbon containing domain TipAS PF07739.13 117 pCP020480_00016 - 296 0.36 11.4 6.4 1 3 0.24 5.3e+02 1.2 0.7 15 44 27 56 13 88 0.57 TipAS antibiotic-recognition domain TipAS PF07739.13 117 pCP020480_00016 - 296 0.36 11.4 6.4 2 3 0.012 27 5.4 0.1 26 75 89 138 56 149 0.68 TipAS antibiotic-recognition domain TipAS PF07739.13 117 pCP020480_00016 - 296 0.36 11.4 6.4 3 3 0.004 9 6.9 0.2 19 71 156 208 147 224 0.85 TipAS antibiotic-recognition domain Exonuc_VII_L PF02601.15 304 pCP020480_00016 - 296 0.37 10.3 10.9 1 2 0.0064 14 5.1 3.2 159 242 15 77 1 119 0.29 Exonuclease VII, large subunit Exonuc_VII_L PF02601.15 304 pCP020480_00016 - 296 0.37 10.3 10.9 2 2 0.00029 0.65 9.5 2.7 144 240 105 204 96 279 0.65 Exonuclease VII, large subunit OmpH PF03938.14 138 pCP020480_00016 - 296 2.8 8.3 16.8 1 3 0.0016 3.5 8.0 3.1 23 103 15 108 3 115 0.72 Outer membrane protein (OmpH-like) OmpH PF03938.14 138 pCP020480_00016 - 296 2.8 8.3 16.8 2 3 0.0017 3.8 7.9 2.6 35 117 137 222 111 233 0.62 Outer membrane protein (OmpH-like) OmpH PF03938.14 138 pCP020480_00016 - 296 2.8 8.3 16.8 3 3 0.84 1.9e+03 -0.9 0.1 16 32 244 260 232 288 0.54 Outer membrane protein (OmpH-like) TrbM PF07424.11 156 pCP020480_00017 - 197 3.4e-39 134.3 1.4 1 1 2.4e-43 4.3e-39 133.9 1.4 2 148 23 181 22 190 0.87 TrbM Cag12 PF13117.6 97 pCP020480_00018 - 136 1.1e-16 61.2 0.1 1 1 2.4e-20 1.4e-16 60.7 0.1 6 94 29 115 25 118 0.92 Cag pathogenicity island protein Cag12 LPAM_2 PF13627.6 23 pCP020480_00018 - 136 0.027 14.3 3.2 1 1 7.4e-06 0.044 13.6 3.2 2 19 7 24 6 24 0.90 Prokaryotic lipoprotein-attachment site DUF5061 PF16587.5 103 pCP020480_00018 - 136 0.15 12.2 0.1 1 1 3.1e-05 0.19 11.8 0.1 2 34 8 40 7 91 0.82 17 kDa common-antigen outer membrane protein T4SS-DNA_transf PF02534.14 469 pCP020480_00019 - 606 1.1e-109 367.3 0.1 1 1 3.4e-113 1.5e-109 366.9 0.1 2 461 93 572 82 578 0.86 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP020480_00019 - 606 6.2e-27 94.1 0.0 1 1 2.4e-30 1.1e-26 93.3 0.0 2 125 414 535 413 536 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP020480_00019 - 606 1.4e-18 67.0 0.0 1 2 1.4e-06 0.0061 15.5 0.0 44 127 158 253 136 272 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP020480_00019 - 606 1.4e-18 67.0 0.0 2 2 7.3e-17 3.3e-13 49.3 0.0 158 369 322 538 301 550 0.78 Type IV secretion-system coupling protein DNA-binding domain BRI3BP PF14965.6 180 pCP020480_00019 - 606 0.1 12.1 2.6 1 2 2.4e-05 0.11 12.0 1.5 70 144 4 77 1 100 0.82 Negative regulator of p53/TP53 BRI3BP PF14965.6 180 pCP020480_00019 - 606 0.1 12.1 2.6 2 2 1.3 6e+03 -3.4 0.0 8 27 490 509 488 520 0.81 Negative regulator of p53/TP53 Njmu-R1 PF15053.6 353 pCP020480_00021 - 234 0.0055 15.9 1.7 1 1 2.7e-06 0.0081 15.3 1.7 121 227 3 109 1 140 0.77 Mjmu-R1-like protein family SlyX PF04102.12 67 pCP020480_00021 - 234 0.5 11.0 6.8 1 2 0.00058 1.7 9.3 0.9 7 55 5 53 4 64 0.83 SlyX SlyX PF04102.12 67 pCP020480_00021 - 234 0.5 11.0 6.8 2 2 0.019 56 4.5 0.6 30 52 206 228 198 233 0.68 SlyX PEP-utilisers_N PF05524.13 116 pCP020480_00021 - 234 0.54 10.5 3.9 1 2 0.012 37 4.5 0.3 27 63 18 55 5 79 0.70 PEP-utilising enzyme, N-terminal PEP-utilisers_N PF05524.13 116 pCP020480_00021 - 234 0.54 10.5 3.9 2 2 0.0026 7.8 6.7 0.3 19 51 195 227 176 233 0.80 PEP-utilising enzyme, N-terminal Halogen_Hydrol PF10112.9 191 pCP020480_00021 - 234 1.6 8.8 7.3 1 2 0.003 9.1 6.3 0.9 66 95 20 49 3 71 0.80 5-bromo-4-chloroindolyl phosphate hydrolysis protein Halogen_Hydrol PF10112.9 191 pCP020480_00021 - 234 1.6 8.8 7.3 2 2 0.0039 12 5.9 0.8 49 82 195 228 176 231 0.83 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF16 PF01519.16 104 pCP020480_00021 - 234 4.3 7.9 11.6 1 3 0.0011 3.2 8.3 2.4 24 56 12 44 3 77 0.74 Protein of unknown function DUF16 DUF16 PF01519.16 104 pCP020480_00021 - 234 4.3 7.9 11.6 2 3 1.2 3.6e+03 -1.5 0.0 14 25 95 106 58 132 0.66 Protein of unknown function DUF16 DUF16 PF01519.16 104 pCP020480_00021 - 234 4.3 7.9 11.6 3 3 0.014 42 4.7 1.0 42 68 201 227 177 233 0.58 Protein of unknown function DUF16 PCRF PF03462.18 193 pCP020480_00021 - 234 4.3 7.1 17.6 1 2 0.00018 0.53 10.1 5.0 15 91 15 93 3 99 0.86 PCRF domain PCRF PF03462.18 193 pCP020480_00021 - 234 4.3 7.1 17.6 2 2 0.13 3.9e+02 0.8 4.4 2 53 117 168 116 229 0.48 PCRF domain T2SSE PF00437.20 273 pCP020480_00022 - 329 5.1e-54 183.2 0.0 1 1 1.2e-56 6.4e-54 182.8 0.0 6 269 14 311 9 314 0.94 Type II/IV secretion system protein AAA_22 PF13401.6 137 pCP020480_00022 - 329 4.9e-05 23.6 0.0 1 1 1.8e-07 9.4e-05 22.7 0.0 7 57 162 222 159 251 0.82 AAA domain ABC_tran PF00005.27 137 pCP020480_00022 - 329 0.00012 22.6 0.0 1 1 5.5e-07 0.00029 21.4 0.0 8 51 157 201 150 229 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP020480_00022 - 329 0.00021 20.7 0.0 1 1 6.5e-07 0.00034 20.0 0.0 28 60 146 181 125 183 0.79 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP020480_00022 - 329 0.00062 19.3 0.0 1 1 2e-06 0.0011 18.6 0.0 19 58 146 185 130 196 0.85 P-loop containing dynein motor region AAA_23 PF13476.6 200 pCP020480_00022 - 329 0.0028 18.2 1.3 1 2 4.3 2.3e+03 -1.1 0.2 154 156 124 126 42 151 0.51 AAA domain AAA_23 PF13476.6 200 pCP020480_00022 - 329 0.0028 18.2 1.3 2 2 5.3e-06 0.0028 18.2 1.3 5 38 147 179 145 182 0.84 AAA domain TsaE PF02367.17 125 pCP020480_00022 - 329 0.003 17.5 0.0 1 1 1.2e-05 0.0064 16.5 0.0 11 45 150 186 142 194 0.77 Threonylcarbamoyl adenosine biosynthesis protein TsaE Pox_A32 PF04665.12 242 pCP020480_00022 - 329 0.003 17.0 0.0 1 1 9.2e-06 0.0048 16.4 0.0 15 36 162 183 145 209 0.85 Poxvirus A32 protein AAA_15 PF13175.6 369 pCP020480_00022 - 329 0.0035 17.1 2.5 1 2 0.21 1.1e+02 2.3 1.2 184 217 74 139 2 147 0.50 AAA ATPase domain AAA_15 PF13175.6 369 pCP020480_00022 - 329 0.0035 17.1 2.5 2 2 6.7e-06 0.0035 17.1 2.5 9 54 147 191 145 224 0.78 AAA ATPase domain AAA_24 PF13479.6 197 pCP020480_00022 - 329 0.0041 16.9 0.0 1 1 1.3e-05 0.0069 16.1 0.0 3 32 161 187 160 229 0.74 AAA domain Septin PF00735.18 281 pCP020480_00022 - 329 0.0043 16.4 0.0 1 1 1.4e-05 0.0072 15.6 0.0 5 33 161 189 157 209 0.78 Septin RNA_helicase PF00910.22 107 pCP020480_00022 - 329 0.012 16.0 0.0 1 1 8.1e-05 0.043 14.2 0.0 1 21 163 183 163 223 0.85 RNA helicase ATPase_2 PF01637.18 233 pCP020480_00022 - 329 0.013 15.4 0.0 1 1 3.9e-05 0.021 14.8 0.0 23 82 163 226 150 281 0.86 ATPase domain predominantly from Archaea NACHT PF05729.12 166 pCP020480_00022 - 329 0.015 15.2 0.0 1 1 4.8e-05 0.025 14.5 0.0 3 22 163 182 161 185 0.91 NACHT domain AAA_29 PF13555.6 61 pCP020480_00022 - 329 0.015 15.0 0.0 1 1 6.6e-05 0.035 13.9 0.0 8 39 148 177 139 183 0.74 P-loop containing region of AAA domain DUF87 PF01935.17 227 pCP020480_00022 - 329 0.015 15.4 1.0 1 2 2.6 1.4e+03 -0.8 0.1 152 187 105 138 37 158 0.65 Helicase HerA, central domain DUF87 PF01935.17 227 pCP020480_00022 - 329 0.015 15.4 1.0 2 2 5.6e-05 0.03 14.4 0.2 24 45 161 182 138 193 0.82 Helicase HerA, central domain DUF815 PF05673.13 250 pCP020480_00022 - 329 0.021 14.0 0.0 1 1 5.9e-05 0.031 13.4 0.0 11 76 117 183 107 209 0.79 Protein of unknown function (DUF815) DEAD PF00270.29 176 pCP020480_00022 - 329 0.021 14.6 0.0 1 1 5.7e-05 0.03 14.1 0.0 11 32 157 177 144 283 0.83 DEAD/DEAH box helicase Mg_chelatase PF01078.21 207 pCP020480_00022 - 329 0.023 14.1 0.0 1 2 2 1.1e+03 -1.2 0.0 40 59 84 103 81 125 0.82 Magnesium chelatase, subunit ChlI Mg_chelatase PF01078.21 207 pCP020480_00022 - 329 0.023 14.1 0.0 2 2 0.0002 0.1 11.9 0.0 7 49 145 187 139 227 0.82 Magnesium chelatase, subunit ChlI ATP_bind_1 PF03029.17 241 pCP020480_00022 - 329 0.027 14.3 0.0 1 1 9.4e-05 0.049 13.4 0.0 1 23 165 187 165 193 0.86 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 167 pCP020480_00022 - 329 0.045 13.7 0.0 1 1 0.00014 0.072 13.0 0.0 64 121 127 182 110 199 0.67 RsgA GTPase TrwB_AAD_bind PF10412.9 386 pCP020480_00022 - 329 0.046 12.6 0.0 1 1 0.00015 0.079 11.8 0.0 17 45 162 190 156 221 0.78 Type IV secretion-system coupling protein DNA-binding domain Dynamin_N PF00350.23 168 pCP020480_00022 - 329 0.051 13.6 0.0 1 2 1.2 6.2e+02 0.3 0.0 21 53 84 115 25 156 0.64 Dynamin family Dynamin_N PF00350.23 168 pCP020480_00022 - 329 0.051 13.6 0.0 2 2 0.00075 0.4 10.7 0.0 1 32 163 192 163 221 0.88 Dynamin family ResIII PF04851.15 171 pCP020480_00022 - 329 0.055 13.5 0.1 1 1 0.00023 0.12 12.4 0.1 5 46 142 182 137 224 0.87 Type III restriction enzyme, res subunit SMC_N PF02463.19 220 pCP020480_00022 - 329 0.063 12.7 0.1 1 1 0.00022 0.12 11.8 0.1 7 44 146 180 137 206 0.76 RecF/RecN/SMC N terminal domain PduV-EutP PF10662.9 143 pCP020480_00022 - 329 0.07 12.9 0.0 1 2 0.0013 0.7 9.6 0.0 2 22 161 181 160 204 0.88 Ethanolamine utilisation - propanediol utilisation PduV-EutP PF10662.9 143 pCP020480_00022 - 329 0.07 12.9 0.0 2 2 0.84 4.4e+02 0.5 0.0 76 109 288 321 275 326 0.80 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 130 pCP020480_00022 - 329 0.073 13.6 0.0 1 1 0.00027 0.14 12.7 0.0 1 93 163 278 163 292 0.56 AAA domain PRK PF00485.18 197 pCP020480_00022 - 329 0.089 12.5 0.0 1 1 0.00031 0.16 11.7 0.0 2 37 163 197 162 224 0.68 Phosphoribulokinase / Uridine kinase family MobB PF03205.14 133 pCP020480_00022 - 329 0.09 12.7 0.0 1 1 0.00036 0.19 11.6 0.0 2 22 163 183 162 199 0.88 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.6 131 pCP020480_00022 - 329 0.091 12.8 0.3 1 1 0.0004 0.21 11.6 0.0 3 50 161 208 160 241 0.76 AAA domain GvpD PF07088.11 484 pCP020480_00022 - 329 0.093 11.3 0.0 1 1 0.00022 0.12 11.0 0.0 8 43 158 193 150 260 0.74 GvpD gas vesicle protein Sigma54_activat PF00158.26 168 pCP020480_00022 - 329 0.1 12.3 0.0 1 1 0.00045 0.24 11.1 0.0 13 43 151 181 142 200 0.81 Sigma-54 interaction domain Roc PF08477.13 120 pCP020480_00022 - 329 0.12 12.6 0.1 1 1 0.00066 0.35 11.1 0.0 2 21 163 182 162 210 0.81 Ras of Complex, Roc, domain of DAPkinase AAA_33 PF13671.6 143 pCP020480_00022 - 329 0.13 12.5 0.0 1 1 0.00039 0.21 11.8 0.0 2 20 163 181 163 240 0.90 AAA domain MORN_2 PF07661.13 22 pCP020480_00023 - 194 0.39 11.1 2.9 1 2 0.051 4.5e+02 1.7 0.1 8 22 138 152 134 152 0.81 MORN repeat variant MORN_2 PF07661.13 22 pCP020480_00023 - 194 0.39 11.1 2.9 2 2 0.00031 2.8 8.4 0.6 5 17 155 167 154 169 0.89 MORN repeat variant Ribosomal_S13 PF00416.22 128 pCP020480_00023 - 194 0.83 10.1 4.2 1 2 0.002 17 5.8 0.1 47 91 22 66 8 83 0.78 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 pCP020480_00023 - 194 0.83 10.1 4.2 2 2 0.0036 32 4.9 1.4 37 72 155 190 146 194 0.80 Ribosomal protein S13/S18 TrbI PF03743.14 187 pCP020480_00024 - 216 2.2e-47 161.4 0.1 1 1 1.4e-51 2.5e-47 161.2 0.1 1 187 25 206 25 206 0.98 Bacterial conjugation TrbI-like protein DUF5345 PF17280.2 77 pCP020480_00025 - 73 0.01 15.8 0.1 1 1 6e-06 0.018 15.0 0.1 31 61 12 42 4 44 0.90 Family of unknown function (DUF5345) DUF3671 PF12420.8 115 pCP020480_00025 - 73 0.029 14.4 0.2 1 1 1.2e-05 0.036 14.1 0.2 31 86 6 62 2 67 0.78 Protein of unknown function Cyt_bd_oxida_I PF01654.17 418 pCP020480_00025 - 73 0.074 11.7 0.0 1 1 2.6e-05 0.079 11.6 0.0 182 208 21 51 12 62 0.76 Cytochrome bd terminal oxidase subunit I PAP_PilO PF06864.12 410 pCP020480_00025 - 73 0.12 11.2 0.0 1 1 4e-05 0.12 11.2 0.0 161 203 17 58 2 72 0.68 Pilin accessory protein (PilO) AIF_C PF14721.6 131 pCP020480_00025 - 73 0.19 12.1 2.0 1 2 7.8e-05 0.23 11.8 0.4 84 121 6 43 1 54 0.83 Apoptosis-inducing factor, mitochondrion-associated, C-term AIF_C PF14721.6 131 pCP020480_00025 - 73 0.19 12.1 2.0 2 2 0.14 4.1e+02 1.3 0.4 81 95 50 64 40 72 0.32 Apoptosis-inducing factor, mitochondrion-associated, C-term Vpu PF00558.19 81 pCP020480_00025 - 73 1.5 8.7 5.5 1 1 0.0017 5.1 6.9 5.4 4 38 19 54 16 65 0.73 Vpu protein CagX PF03524.15 211 pCP020480_00026 - 316 7.1e-54 182.7 0.7 1 1 8e-58 1.4e-53 181.7 0.7 2 211 29 270 28 270 0.92 Conjugal transfer protein VirB8 PF04335.13 214 pCP020480_00027 - 219 8.4e-50 169.6 0.1 1 1 1.1e-53 1e-49 169.3 0.1 5 214 10 216 7 216 0.92 VirB8 protein Wzz PF02706.15 92 pCP020480_00027 - 219 2.4 8.5 6.7 1 2 0.00031 2.8 8.3 3.2 8 51 17 60 11 124 0.63 Chain length determinant protein Wzz PF02706.15 92 pCP020480_00027 - 219 2.4 8.5 6.7 2 2 0.085 7.6e+02 0.5 0.1 42 64 159 186 158 203 0.62 Chain length determinant protein VASP_tetra PF08776.11 37 pCP020480_00028 - 69 0.063 12.9 6.4 1 1 9.1e-06 0.16 11.5 6.4 6 35 35 63 35 65 0.92 VASP tetramerisation domain TrbL PF04610.14 215 pCP020480_00030 - 331 1.2e-32 113.5 25.3 1 1 3.6e-36 1.6e-32 113.0 25.3 1 212 40 245 40 279 0.91 TrbL/VirB6 plasmid conjugal transfer protein DUF2070 PF09843.9 564 pCP020480_00030 - 331 0.45 8.7 16.6 1 1 0.00015 0.69 8.1 16.6 20 125 135 248 117 263 0.78 Predicted membrane protein (DUF2070) AIM3 PF17096.5 88 pCP020480_00030 - 331 5.4 8.0 7.0 1 1 0.0021 9.6 7.2 7.0 7 35 281 309 278 312 0.92 Altered inheritance of mitochondria protein 3 DUF412 PF04217.13 141 pCP020480_00030 - 331 5.6 6.9 10.8 1 3 0.021 95 2.9 0.0 60 90 30 60 12 71 0.78 Protein of unknown function, DUF412 DUF412 PF04217.13 141 pCP020480_00030 - 331 5.6 6.9 10.8 2 3 0.0038 17 5.3 6.6 38 101 137 197 118 205 0.78 Protein of unknown function, DUF412 DUF412 PF04217.13 141 pCP020480_00030 - 331 5.6 6.9 10.8 3 3 1.2 5.5e+03 -2.8 0.0 59 79 227 251 204 252 0.61 Protein of unknown function, DUF412 T4SS PF07996.11 197 pCP020480_00031 - 245 2e-23 83.9 15.9 1 1 1.1e-26 2.4e-23 83.6 15.9 1 195 21 225 21 227 0.91 Type IV secretion system proteins CHASE4 PF05228.13 137 pCP020480_00031 - 245 0.051 13.8 5.7 1 3 0.01 23 5.2 0.6 4 36 36 68 35 71 0.89 CHASE4 domain CHASE4 PF05228.13 137 pCP020480_00031 - 245 0.051 13.8 5.7 2 3 0.00046 1 9.6 0.2 2 58 75 138 74 175 0.79 CHASE4 domain CHASE4 PF05228.13 137 pCP020480_00031 - 245 0.051 13.8 5.7 3 3 0.42 9.4e+02 -0.0 0.0 92 122 147 178 138 192 0.86 CHASE4 domain AChE_tetra PF08674.10 37 pCP020480_00031 - 245 0.096 12.4 1.2 1 2 0.00022 0.5 10.1 0.1 6 29 43 66 41 72 0.92 Acetylcholinesterase tetramerisation domain AChE_tetra PF08674.10 37 pCP020480_00031 - 245 0.096 12.4 1.2 2 2 0.22 4.9e+02 0.5 0.1 15 35 123 143 121 145 0.88 Acetylcholinesterase tetramerisation domain zf-RING_6 PF14835.6 65 pCP020480_00031 - 245 0.12 12.2 0.1 1 2 0.00027 0.61 10.0 0.0 35 53 14 32 7 41 0.83 zf-RING of BARD1-type protein zf-RING_6 PF14835.6 65 pCP020480_00031 - 245 0.12 12.2 0.1 2 2 0.79 1.8e+03 -1.1 0.0 9 24 130 145 124 149 0.80 zf-RING of BARD1-type protein KMP11 PF03037.16 90 pCP020480_00031 - 245 0.13 13.1 3.2 1 3 0.00014 0.31 11.8 0.0 8 54 18 64 12 92 0.85 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 pCP020480_00031 - 245 0.13 13.1 3.2 2 3 0.54 1.2e+03 0.3 0.4 51 51 125 125 84 200 0.62 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 pCP020480_00031 - 245 0.13 13.1 3.2 3 3 1.4 3.1e+03 -1.0 0.2 47 47 212 212 167 238 0.59 Kinetoplastid membrane protein 11 PCRF PF03462.18 193 pCP020480_00031 - 245 0.22 11.3 12.0 1 2 0.0012 2.7 7.8 0.4 12 82 29 99 22 122 0.53 PCRF domain PCRF PF03462.18 193 pCP020480_00031 - 245 0.22 11.3 12.0 2 2 0.0016 3.5 7.5 5.7 20 92 153 232 136 239 0.56 PCRF domain Med8 PF10232.9 232 pCP020480_00031 - 245 0.27 10.8 9.0 1 2 0.47 1.1e+03 -1.0 0.2 139 159 46 66 24 101 0.52 Mediator of RNA polymerase II transcription complex subunit 8 Med8 PF10232.9 232 pCP020480_00031 - 245 0.27 10.8 9.0 2 2 1.2e-05 0.027 14.1 3.9 123 205 146 228 143 244 0.82 Mediator of RNA polymerase II transcription complex subunit 8 DUF1474 PF07342.11 100 pCP020480_00031 - 245 1.3 9.5 5.1 1 3 2.7 6.1e+03 -2.2 0.0 72 76 66 70 32 92 0.60 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 pCP020480_00031 - 245 1.3 9.5 5.1 2 3 0.00019 0.42 11.2 1.1 13 88 112 187 100 199 0.81 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 pCP020480_00031 - 245 1.3 9.5 5.1 3 3 1.4 3.1e+03 -1.3 0.0 46 66 207 227 190 236 0.73 Protein of unknown function (DUF1474) Phage_pRha PF09669.10 88 pCP020480_00032 - 206 1.4e-29 102.4 0.0 1 1 1.3e-33 2.4e-29 101.7 0.0 2 88 26 124 25 124 0.90 Phage regulatory protein Rha (Phage_pRha) CagE_TrbE_VirB PF03135.14 206 pCP020480_00033 - 923 2.5e-43 148.6 0.5 1 1 6.9e-47 6.2e-43 147.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP020480_00033 - 923 1.2e-19 70.3 2.0 1 1 2.4e-23 2.1e-19 69.5 2.0 3 83 4 84 2 85 0.95 Type IV secretory pathway, VirB3-like protein TrbC PF04956.13 99 pCP020480_00034 - 85 2.3e-16 59.8 8.3 1 1 4.1e-20 2.5e-16 59.7 8.3 21 99 5 83 1 83 0.95 TrbC/VIRB2 family ThrE PF06738.12 241 pCP020480_00034 - 85 0.025 14.0 2.1 1 1 4.8e-06 0.029 13.8 2.1 90 149 21 79 13 83 0.84 Putative threonine/serine exporter DUF2062 PF09835.9 148 pCP020480_00034 - 85 1.4 8.7 7.8 1 1 0.00033 2 8.3 7.3 78 134 35 84 9 85 0.74 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pCP020480_00036 - 128 0.0005 20.2 1.3 1 2 3.4e-08 0.00061 19.9 0.1 5 55 10 71 7 87 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP020480_00036 - 128 0.0005 20.2 1.3 2 2 0.16 2.8e+03 -1.4 0.1 50 63 103 115 89 125 0.60 CRISPR associated protein Cas2 Resolvase PF00239.21 146 pCP020480_00037 - 202 1e-32 113.2 0.6 1 1 2.9e-36 1.3e-32 112.9 0.6 2 145 3 144 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP020480_00037 - 202 0.0011 18.6 1.4 1 3 1.1 4.9e+03 -2.6 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP020480_00037 - 202 0.0011 18.6 1.4 2 3 2.8e-05 0.12 12.1 0.1 2 36 117 152 117 154 0.91 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP020480_00037 - 202 0.0011 18.6 1.4 3 3 0.007 31 4.4 0.0 9 26 160 177 158 181 0.88 Helix-turn-helix domain Mu-like_Pro PF10123.9 325 pCP020480_00037 - 202 0.12 11.9 0.1 1 1 3.5e-05 0.16 11.5 0.1 148 285 24 177 2 187 0.73 Mu-like prophage I protein Pox_A_type_inc PF04508.12 23 pCP020480_00037 - 202 8.5 6.4 9.6 1 4 0.77 3.5e+03 -1.8 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP020480_00037 - 202 8.5 6.4 9.6 2 4 4.2e-05 0.19 11.6 0.8 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP020480_00037 - 202 8.5 6.4 9.6 3 4 2.1 9.5e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP020480_00037 - 202 8.5 6.4 9.6 4 4 1.2 5.4e+03 -2.4 0.0 13 19 168 174 168 175 0.85 Viral A-type inclusion protein repeat SseC PF04888.12 317 pCP020480_00038 - 136 0.0012 18.6 1.4 1 2 3.3e-07 0.0012 18.6 1.4 27 77 8 57 6 60 0.94 Secretion system effector C (SseC) like family SseC PF04888.12 317 pCP020480_00038 - 136 0.0012 18.6 1.4 2 2 2.1 7.5e+03 -3.8 4.1 58 70 95 107 93 110 0.75 Secretion system effector C (SseC) like family Leu_Phe_trans PF03588.14 169 pCP020480_00038 - 136 0.034 13.7 0.1 1 1 1.3e-05 0.048 13.2 0.1 76 120 5 48 1 54 0.91 Leucyl/phenylalanyl-tRNA protein transferase T2SSF PF00482.23 125 pCP020480_00038 - 136 0.18 11.8 0.1 1 2 5e-05 0.18 11.8 0.1 85 123 17 55 13 57 0.88 Type II secretion system (T2SS), protein F T2SSF PF00482.23 125 pCP020480_00038 - 136 0.18 11.8 0.1 2 2 0.27 9.9e+02 -0.3 1.5 106 121 99 114 86 116 0.56 Type II secretion system (T2SS), protein F DUF3185 PF11381.8 59 pCP020480_00038 - 136 0.19 11.7 9.4 1 3 0.0004 1.4 9.0 0.0 37 57 26 46 9 56 0.86 Protein of unknown function (DUF3185) DUF3185 PF11381.8 59 pCP020480_00038 - 136 0.19 11.7 9.4 2 3 0.077 2.8e+02 1.6 1.2 1 10 98 107 98 112 0.83 Protein of unknown function (DUF3185) DUF3185 PF11381.8 59 pCP020480_00038 - 136 0.19 11.7 9.4 3 3 0.01 36 4.5 1.2 8 17 123 132 121 136 0.86 Protein of unknown function (DUF3185) DUF2207 PF09972.9 492 pCP020480_00038 - 136 6.4 5.4 16.4 1 2 2.5e-05 0.089 11.5 1.0 360 418 7 69 1 86 0.43 Predicted membrane protein (DUF2207) DUF2207 PF09972.9 492 pCP020480_00038 - 136 6.4 5.4 16.4 2 2 0.19 6.7e+02 -1.2 9.3 383 419 93 129 73 135 0.49 Predicted membrane protein (DUF2207) AAA_25 PF13481.6 194 pCP020480_00039 - 597 6.7e-16 58.4 0.0 1 1 4.5e-19 1.3e-15 57.5 0.0 30 193 30 175 15 176 0.84 AAA domain DnaB_C PF03796.15 255 pCP020480_00039 - 597 0.00036 20.0 0.0 1 1 7e-07 0.0021 17.4 0.0 14 111 28 130 19 179 0.82 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP020480_00039 - 597 0.0014 18.4 0.0 1 2 5.8e-06 0.017 14.8 0.0 45 87 31 73 16 86 0.87 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP020480_00039 - 597 0.0014 18.4 0.0 2 2 0.18 5.3e+02 0.2 0.0 97 118 109 130 97 169 0.73 IstB-like ATP binding protein ATPase PF06745.13 231 pCP020480_00039 - 597 0.012 15.0 0.0 1 2 1.5e-05 0.044 13.1 0.0 16 71 30 84 24 214 0.87 KaiC ATPase PF06745.13 231 pCP020480_00039 - 597 0.012 15.0 0.0 2 2 1 3e+03 -2.7 0.0 137 160 329 352 322 356 0.83 KaiC AAA PF00004.29 132 pCP020480_00039 - 597 0.076 13.4 0.3 1 3 0.0003 0.89 10.0 0.0 2 105 37 166 36 177 0.64 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP020480_00039 - 597 0.076 13.4 0.3 2 3 0.36 1.1e+03 0.0 0.0 55 74 417 434 380 456 0.77 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP020480_00039 - 597 0.076 13.4 0.3 3 3 4.8 1.4e+04 -3.6 0.0 23 46 495 520 475 526 0.66 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pCP020480_00039 - 597 0.19 11.8 2.8 1 1 0.00056 1.7 8.7 2.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain Toprim_3 PF13362.6 95 pCP020480_00040 - 376 4.6e-09 36.5 0.0 1 1 8.4e-13 7.5e-09 35.8 0.0 3 94 264 365 262 366 0.83 Toprim domain Toprim_4 PF13662.6 89 pCP020480_00040 - 376 0.001 19.5 0.1 1 1 2.5e-07 0.0023 18.4 0.1 2 83 262 337 261 341 0.89 Toprim domain Fic PF02661.18 97 pCP020480_00041 - 244 3.3e-17 63.2 0.1 1 2 5.1e-21 9.2e-17 61.7 0.0 2 96 80 180 79 181 0.93 Fic/DOC family Fic PF02661.18 97 pCP020480_00041 - 244 3.3e-17 63.2 0.1 2 2 0.34 6.1e+03 -1.8 0.0 37 57 200 220 190 232 0.60 Fic/DOC family MAS20 PF02064.15 129 pCP020480_00042 - 230 0.22 11.6 7.6 1 2 1.6e-05 0.28 11.3 0.1 61 97 77 109 53 133 0.69 MAS20 protein import receptor MAS20 PF02064.15 129 pCP020480_00042 - 230 0.22 11.6 7.6 2 2 0.019 3.5e+02 1.3 4.4 31 61 179 211 171 227 0.43 MAS20 protein import receptor ANAPC4 PF12896.7 204 pCP020480_00043 - 101 0.027 14.0 0.1 1 1 3.8e-06 0.034 13.6 0.1 45 88 28 70 22 81 0.92 Anaphase-promoting complex, cyclosome, subunit 4 MSG PF02349.15 75 pCP020480_00043 - 101 0.071 13.3 4.6 1 1 1e-05 0.094 12.9 4.6 18 65 29 79 21 84 0.80 Major surface glycoprotein EssA PF10661.9 148 pCP020480_00044 - 80 0.18 11.6 8.8 1 1 9e-06 0.16 11.8 7.9 39 76 4 41 2 59 0.83 WXG100 protein secretion system (Wss), protein EssA GTP_EFTU PF00009.27 194 pCP020775_00001 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP020775_00001 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP020775_00001 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP020775_00001 - 639 1.2e-16 60.5 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP020775_00001 - 639 3e-12 46.4 0.1 1 1 3.5e-15 6.9e-12 45.3 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP020775_00001 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP020775_00001 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP020775_00001 - 639 0.019 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP020775_00001 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP020775_00001 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family APH PF01636.23 240 pCP020775_00002 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pCP020775_00002 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pCP020775_00002 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pCP020775_00002 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family W2 PF02020.18 79 pCP020775_00003 - 266 0.02 15.0 0.1 1 2 0.23 4.1e+03 -2.0 0.0 43 65 155 177 150 179 0.61 eIF4-gamma/eIF5/eIF2-epsilon W2 PF02020.18 79 pCP020775_00003 - 266 0.02 15.0 0.1 2 2 3.4e-06 0.061 13.5 0.0 38 77 180 240 176 242 0.86 eIF4-gamma/eIF5/eIF2-epsilon Lip_prot_lig_C PF10437.9 85 pCP020775_00004 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCP020775_00004 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pCP020775_00004 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP020775_00004 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain LysE PF01810.18 193 pCP020775_00005 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP020775_00005 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP020775_00005 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 pCP020775_00005 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 pCP020775_00005 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 pCP020775_00005 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 pCP020775_00005 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 pCP020775_00005 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP020775_00005 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP020775_00005 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP020775_00005 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 pCP020775_00005 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 pCP020775_00006 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP020775_00006 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP020775_00006 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP020775_00006 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP020775_00006 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP020775_00006 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pCP020775_00007 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP020775_00007 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pCP020775_00008 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP020775_00008 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP020775_00008 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP020775_00008 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP020775_00008 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP020775_00008 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pCP020775_00009 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pCP020775_00010 - 1931 3e-16 59.1 2.6 1 3 1.1e-19 4.1e-16 58.6 0.1 56 245 1016 1272 934 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP020775_00010 - 1931 3e-16 59.1 2.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP020775_00010 - 1931 3e-16 59.1 2.6 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1875 1923 1845 1924 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP020775_00010 - 1931 4.9e-08 33.2 8.3 1 2 1.4e-11 4.9e-08 33.2 8.3 2 148 999 1211 998 1242 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP020775_00010 - 1931 4.9e-08 33.2 8.3 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1798 1909 1724 1931 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP020775_00010 - 1931 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1076 1104 1028 1108 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP020775_00010 - 1931 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP020775_00010 - 1931 8.9e-06 25.6 1.8 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1003 1108 1002 1204 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP020775_00010 - 1931 8.9e-06 25.6 1.8 2 2 0.12 4.2e+02 0.6 0.0 119 150 1882 1915 1827 1930 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP020775_00010 - 1931 3.7e-05 24.2 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 371 471 369 474 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP020775_00010 - 1931 3.7e-05 24.2 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 pCP020775_00011 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 pCP020775_00011 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 pCP020775_00011 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 pCP020775_00011 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) Acetyltransf_7 PF13508.7 76 pCP020775_00012 - 234 0.0002 21.7 0.0 1 1 6.3e-08 0.00038 20.8 0.0 29 75 79 143 36 144 0.68 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pCP020775_00012 - 234 0.0029 17.8 0.0 1 1 1.2e-06 0.0072 16.5 0.0 64 92 81 109 56 142 0.78 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 pCP020775_00012 - 234 0.0083 16.2 0.3 1 1 2.6e-06 0.015 15.3 0.3 24 67 171 214 154 218 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Relaxase PF03432.14 242 pCP020775_00013 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP020775_00013 - 462 4.7e-10 39.5 7.4 2 2 0.0071 1.3e+02 2.0 5.4 119 183 326 395 318 430 0.69 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pCP020775_00014 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP020775_00014 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP020775_00014 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP020775_00014 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP020775_00014 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP020775_00014 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP020775_00014 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pCP020775_00014 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP020775_00014 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pCP020775_00014 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP020775_00014 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 pCP020775_00015 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP020775_00015 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 pCP020775_00015 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 pCP020775_00015 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP020775_00015 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 pCP020775_00017 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pCP020775_00017 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pCP020775_00018 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pCP020775_00018 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 pCP020775_00018 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pCP020775_00018 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP020775_00018 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pCP020775_00019 - 92 0.0072 16.3 0.0 1 1 7.4e-07 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) Sdh_cyt PF01127.22 121 pCP020775_00020 - 91 0.0019 18.2 0.5 1 1 3.8e-07 0.0023 18.0 0.5 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pCP020775_00020 - 91 0.14 12.5 3.0 1 1 3.1e-05 0.19 12.1 3.0 6 55 12 74 10 90 0.67 2TM domain DUF2633 PF11119.8 57 pCP020775_00020 - 91 1.1 9.2 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pCP020775_00022 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system AAA_25 PF13481.6 194 pCP020775_00023 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pCP020775_00023 - 597 0.00073 19.0 0.0 1 2 1.6e-06 0.0042 16.5 0.0 16 117 30 136 23 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP020775_00023 - 597 0.00073 19.0 0.0 2 2 0.014 37 3.5 0.0 123 183 114 176 98 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP020775_00023 - 597 0.0032 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP020775_00023 - 597 0.0032 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pCP020775_00023 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP020775_00023 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pCP020775_00023 - 597 0.028 13.8 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pCP020775_00023 - 597 0.028 13.8 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pCP020775_00023 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pCP020775_00023 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pCP020775_00023 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 pCP020775_00024 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP020775_00024 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP020775_00024 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP020775_00024 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP020775_00024 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP020775_00024 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP020775_00024 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCP020775_00024 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP020775_00024 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP020775_00024 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pCP020775_00025 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP020775_00025 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pCP020775_00025 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pCP020775_00027 - 73 3.4e-11 43.2 3.7 1 1 4.5e-15 4e-11 43.0 3.7 33 99 5 71 2 71 0.95 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP020775_00027 - 73 0.12 12.2 4.4 1 1 2e-05 0.18 11.6 4.4 78 135 23 73 11 73 0.64 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pCP020775_00028 - 922 1.7e-50 172.0 0.4 1 1 6.5e-54 3.9e-50 170.8 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP020775_00028 - 922 7.2e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pCP020775_00028 - 922 0.048 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pCP020775_00029 - 185 6.6e-30 103.5 0.0 1 1 1.7e-33 1e-29 102.9 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCP020775_00029 - 185 0.0051 16.9 0.0 1 1 1.8e-06 0.011 15.9 0.0 23 90 27 94 23 96 0.94 Uncharacterized protein conserved in archaea (DUF2250) DUF5512 PF17631.2 139 pCP020775_00029 - 185 0.094 12.7 0.0 1 1 3.5e-05 0.21 11.6 0.0 77 131 80 130 61 134 0.85 Family of unknown function (DUF5512) FapA PF03961.13 454 pCP020775_00030 - 226 0.0039 15.9 6.9 1 1 1.3e-06 0.0039 15.9 6.9 332 412 3 89 1 140 0.82 Flagellar Assembly Protein A Ax_dynein_light PF10211.9 187 pCP020775_00030 - 226 0.028 14.3 4.0 1 2 9.5e-06 0.028 14.3 4.0 121 182 3 64 1 69 0.87 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP020775_00030 - 226 0.028 14.3 4.0 2 2 0.26 7.8e+02 -0.1 1.0 116 116 194 194 128 226 0.55 Axonemal dynein light chain Fib_alpha PF08702.10 143 pCP020775_00030 - 226 0.6 10.3 12.2 1 3 2e-05 0.061 13.5 4.9 30 97 3 67 1 87 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP020775_00030 - 226 0.6 10.3 12.2 2 3 0.84 2.5e+03 -1.4 0.0 82 121 109 149 79 160 0.62 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP020775_00030 - 226 0.6 10.3 12.2 3 3 0.2 6.1e+02 0.5 0.2 34 56 196 218 178 225 0.65 Fibrinogen alpha/beta chain family DivIC PF04977.15 80 pCP020775_00030 - 226 1.7 8.4 11.6 1 3 0.00031 0.92 9.3 2.0 21 52 5 36 2 48 0.84 Septum formation initiator DivIC PF04977.15 80 pCP020775_00030 - 226 1.7 8.4 11.6 2 3 0.011 32 4.4 0.1 35 65 55 85 40 86 0.82 Septum formation initiator DivIC PF04977.15 80 pCP020775_00030 - 226 1.7 8.4 11.6 3 3 0.47 1.4e+03 -0.9 0.5 21 41 194 214 188 223 0.73 Septum formation initiator Striatin PF08232.12 155 pCP020775_00030 - 226 4.6 7.8 9.6 1 1 0.0047 14 6.2 9.6 29 88 5 69 3 225 0.72 Striatin family Syntaxin-6_N PF09177.11 99 pCP020775_00030 - 226 9.3 6.9 10.2 1 2 0.00059 1.8 9.2 4.5 44 70 4 46 2 87 0.71 Syntaxin 6, N-terminal Syntaxin-6_N PF09177.11 99 pCP020775_00030 - 226 9.3 6.9 10.2 2 2 0.58 1.7e+03 -0.4 0.3 47 47 196 196 140 225 0.54 Syntaxin 6, N-terminal SSB PF00436.25 104 pCP020775_00032 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pCP020775_00033 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP020775_00033 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP020775_00033 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP020775_00033 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP020775_00033 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP020775_00033 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP020775_00033 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pCP020775_00034 - 328 8.6e-29 101.4 13.7 1 1 4.7e-32 1.2e-28 100.9 13.7 1 194 94 298 94 300 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP020775_00034 - 328 0.006 16.7 1.1 1 3 1 2.6e+03 -1.4 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP020775_00034 - 328 0.006 16.7 1.1 2 3 8.3e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP020775_00034 - 328 0.006 16.7 1.1 3 3 4.5 1.1e+04 -3.4 0.0 61 77 301 317 292 325 0.69 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 pCP020775_00034 - 328 0.018 15.7 0.9 1 2 2.3 5.9e+03 -2.1 0.0 54 72 123 141 102 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP020775_00034 - 328 0.018 15.7 0.9 2 2 1.4e-05 0.036 14.7 0.2 31 84 208 270 197 308 0.84 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 pCP020775_00034 - 328 0.041 14.6 11.0 1 2 0.061 1.6e+02 3.0 0.3 51 135 110 145 38 182 0.68 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP020775_00034 - 328 0.041 14.6 11.0 2 2 1.2e-05 0.031 15.0 4.9 49 124 225 314 205 320 0.70 Apoptosis antagonizing transcription factor DUF3752 PF12572.8 152 pCP020775_00034 - 328 1.4 9.5 6.4 1 2 0.0038 9.6 6.7 0.3 21 49 106 136 98 152 0.70 Protein of unknown function (DUF3752) DUF3752 PF12572.8 152 pCP020775_00034 - 328 1.4 9.5 6.4 2 2 0.011 29 5.2 1.2 33 104 233 318 218 327 0.70 Protein of unknown function (DUF3752) THOC7 PF05615.13 132 pCP020775_00034 - 328 2.8 8.2 12.1 1 2 0.00065 1.7 9.0 0.2 57 107 101 151 98 180 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pCP020775_00034 - 328 2.8 8.2 12.1 2 2 0.13 3.4e+02 1.5 6.8 15 91 230 312 215 327 0.70 Tho complex subunit 7 Snapin_Pallidin PF14712.6 90 pCP020775_00034 - 328 4.8 7.7 10.3 1 2 0.62 1.6e+03 -0.4 0.1 40 72 111 142 99 147 0.63 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 pCP020775_00034 - 328 4.8 7.7 10.3 2 2 0.00076 1.9 8.9 5.5 30 82 239 292 209 299 0.84 Snapin/Pallidin TrbL PF04610.14 215 pCP020775_00035 - 330 3.3e-29 102.2 32.7 1 2 5.5e-33 3.3e-29 102.2 32.7 1 214 38 250 38 251 0.92 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP020775_00035 - 330 3.3e-29 102.2 32.7 2 2 0.16 9.4e+02 -0.6 0.1 55 91 281 327 256 330 0.61 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP020775_00035 - 330 0.087 12.6 1.7 1 2 0.078 4.6e+02 0.7 0.2 33 66 62 102 58 116 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP020775_00035 - 330 0.087 12.6 1.7 2 2 8.3e-05 0.49 10.2 0.1 27 81 230 286 198 298 0.73 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP020775_00035 - 330 1.7 9.6 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 297 327 290 329 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pCP020775_00036 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP020775_00036 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pCP020775_00037 - 219 1.6e-52 178.5 0.5 1 1 1.9e-56 1.7e-52 178.4 0.5 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pCP020775_00037 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pCP020775_00038 - 297 9.4e-56 188.9 1.6 1 1 1.7e-59 1.6e-55 188.2 1.6 2 211 31 272 30 272 0.92 Conjugal transfer protein Rho_RNA_bind PF07497.12 73 pCP020775_00038 - 297 0.074 12.9 0.0 1 2 1.4 1.3e+04 -3.8 0.0 9 22 79 92 77 93 0.77 Rho termination factor, RNA-binding domain Rho_RNA_bind PF07497.12 73 pCP020775_00038 - 297 0.074 12.9 0.0 2 2 2.2e-05 0.2 11.5 0.0 21 49 242 270 233 289 0.84 Rho termination factor, RNA-binding domain TrbI PF03743.14 187 pCP020775_00039 - 393 7.4e-48 162.9 0.1 1 2 0.76 6.9e+03 -3.3 0.3 136 154 141 167 120 173 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pCP020775_00039 - 393 7.4e-48 162.9 0.1 2 2 8.2e-52 7.4e-48 162.9 0.1 1 187 196 377 196 377 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP020775_00039 - 393 0.044 12.9 0.1 1 1 7.7e-06 0.069 12.2 0.1 29 81 322 374 303 379 0.85 HaeIII restriction endonuclease T2SSE PF00437.20 273 pCP020775_00040 - 335 7.7e-55 185.9 0.0 1 1 1.5e-57 8.9e-55 185.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP020775_00040 - 335 7.4e-05 23.3 0.0 1 1 2.6e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP020775_00040 - 335 0.00012 21.6 0.0 1 1 3e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP020775_00040 - 335 0.00028 20.5 0.0 1 1 8.8e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP020775_00040 - 335 0.0014 18.9 0.0 1 1 4.5e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 pCP020775_00040 - 335 0.0014 18.4 0.0 1 1 3.9e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pCP020775_00040 - 335 0.0023 17.7 0.0 1 1 9.2e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pCP020775_00040 - 335 0.0035 17.3 0.0 1 1 1.2e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP020775_00040 - 335 0.0055 15.7 0.0 1 1 1.3e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP020775_00040 - 335 0.0073 16.2 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP020775_00040 - 335 0.0087 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP020775_00040 - 335 0.0092 15.9 0.0 1 1 2.3e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pCP020775_00040 - 335 0.019 15.1 0.0 1 1 6.1e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain AAA_14 PF13173.6 131 pCP020775_00040 - 335 0.02 14.9 0.1 1 2 3 1.8e+03 -1.1 0.0 73 104 35 65 15 73 0.83 AAA domain AAA_14 PF13173.6 131 pCP020775_00040 - 335 0.02 14.9 0.1 2 2 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain TrwB_AAD_bind PF10412.9 386 pCP020775_00040 - 335 0.021 13.8 0.0 1 1 5.9e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.6 61 pCP020775_00040 - 335 0.024 14.4 0.0 1 1 8.8e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain ResIII PF04851.15 171 pCP020775_00040 - 335 0.026 14.5 0.0 1 1 9.1e-05 0.053 13.5 0.0 5 50 147 186 132 244 0.73 Type III restriction enzyme, res subunit Sigma54_activat PF00158.26 168 pCP020775_00040 - 335 0.026 14.2 0.0 1 1 9.3e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pCP020775_00040 - 335 0.031 13.7 0.0 1 1 0.0001 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein ATP_bind_1 PF03029.17 241 pCP020775_00040 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 pCP020775_00040 - 335 0.045 14.1 0.0 1 1 0.00018 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 pCP020775_00040 - 335 0.045 13.0 0.0 1 1 0.00013 0.077 12.3 0.0 14 49 158 193 146 207 0.84 Zeta toxin PRK PF00485.18 197 pCP020775_00040 - 335 0.057 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP020775_00040 - 335 0.065 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP020775_00040 - 335 0.074 13.4 0.0 1 1 0.00019 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pCP020775_00040 - 335 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pCP020775_00040 - 335 0.1 12.6 0.5 1 1 0.00042 0.25 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 pCP020775_00040 - 335 0.11 12.4 0.1 1 1 0.0004 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP020775_00040 - 335 0.15 11.7 0.0 1 1 0.00041 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP020775_00040 - 335 0.15 11.8 0.0 1 1 0.00042 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pCP020775_00040 - 335 0.44 11.0 4.2 1 2 2.5 1.5e+03 -0.5 0.1 68 130 84 150 40 162 0.62 AAA domain AAA_23 PF13476.6 200 pCP020775_00040 - 335 0.44 11.0 4.2 2 2 0.00057 0.33 11.4 1.4 22 37 163 178 151 184 0.88 AAA domain T4SS-DNA_transf PF02534.14 469 pCP020775_00041 - 603 8.4e-104 348.0 0.1 1 1 2.6e-107 1.1e-103 347.5 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP020775_00041 - 603 3.5e-24 85.2 0.0 1 1 1.5e-27 6.8e-24 84.3 0.0 2 125 406 528 405 529 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP020775_00041 - 603 3.2e-15 55.9 0.0 1 2 1.6e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP020775_00041 - 603 3.2e-15 55.9 0.0 2 2 1.3e-13 5.8e-10 38.6 0.0 187 369 347 531 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 pCP020775_00041 - 603 0.19 11.8 0.2 1 1 7.4e-05 0.33 11.0 0.2 34 93 7 87 3 100 0.73 Putative Actinobacterial Holin-X, holin superfamily III Cag12 PF13117.6 97 pCP020775_00042 - 143 2.9e-16 59.8 0.3 1 1 4.1e-20 3.7e-16 59.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pCP020775_00042 - 143 0.078 12.8 0.4 1 1 2.3e-05 0.2 11.4 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 pCP020775_00043 - 252 2.4e-38 131.5 1.9 1 1 3.5e-42 3.1e-38 131.2 1.9 1 154 25 190 25 192 0.88 TrbM HpaB PF03241.13 202 pCP020775_00043 - 252 0.21 10.6 0.1 1 2 0.047 4.2e+02 -0.1 0.0 20 39 17 36 4 37 0.76 4-hydroxyphenylacetate 3-hydroxylase C terminal HpaB PF03241.13 202 pCP020775_00043 - 252 0.21 10.6 0.1 2 2 0.00014 1.3 8.1 0.0 57 101 117 161 105 164 0.90 4-hydroxyphenylacetate 3-hydroxylase C terminal PRELI PF04707.14 157 pCP020775_00044 - 265 0.041 13.7 0.4 1 2 0.62 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCP020775_00044 - 265 0.041 13.7 0.4 2 2 4.6e-06 0.041 13.7 0.4 96 155 83 147 69 149 0.85 PRELI-like family Rsd_AlgQ PF04353.13 150 pCP020775_00044 - 265 0.82 9.6 6.3 1 3 0.22 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP020775_00044 - 265 0.82 9.6 6.3 2 3 2.6e-05 0.24 11.4 1.9 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP020775_00044 - 265 0.82 9.6 6.3 3 3 0.9 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ KH_5 PF13184.6 69 pCP020775_00045 - 45 0.00035 20.6 0.5 1 1 2.2e-08 0.00039 20.5 0.5 4 41 2 39 1 40 0.97 NusA-like KH domain CdhD PF03599.16 386 pCP020775_00046 - 206 0.0071 15.1 0.0 1 1 1.9e-06 0.012 14.4 0.0 283 358 11 87 2 96 0.87 CO dehydrogenase/acetyl-CoA synthase delta subunit Redoxin PF08534.10 147 pCP020775_00046 - 206 0.028 14.1 0.9 1 2 0.082 4.9e+02 0.4 0.1 119 146 11 36 4 37 0.82 Redoxin Redoxin PF08534.10 147 pCP020775_00046 - 206 0.028 14.1 0.9 2 2 3e-05 0.18 11.5 0.1 49 76 144 173 138 191 0.79 Redoxin YnfE PF17452.2 78 pCP020775_00046 - 206 0.12 12.6 0.1 1 3 2.1e-05 0.12 12.6 0.1 11 33 10 32 5 47 0.88 Uncharacterized YnfE-like YnfE PF17452.2 78 pCP020775_00046 - 206 0.12 12.6 0.1 2 3 0.31 1.8e+03 -0.7 0.3 36 50 143 157 136 185 0.64 Uncharacterized YnfE-like YnfE PF17452.2 78 pCP020775_00046 - 206 0.12 12.6 0.1 3 3 0.84 5e+03 -2.1 1.5 26 38 184 195 170 205 0.48 Uncharacterized YnfE-like DUF1461 PF07314.11 189 pCP020775_00047 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) Topoisom_bac PF01131.20 413 pCP020775_00048 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP020775_00048 - 730 6.3e-12 45.6 2.6 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP020775_00048 - 730 6.3e-12 45.6 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP020775_00048 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP020775_00048 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP020775_00048 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP020775_00048 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP020775_00048 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP020775_00048 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP020775_00048 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP020775_00048 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP020775_00048 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pCP020775_00048 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pCP020775_00048 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pCP020775_00048 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP020775_00048 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP020775_00048 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP020775_00048 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pCP020775_00048 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pCP020775_00048 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP020775_00048 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pCP020775_00048 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP020775_00048 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP020775_00048 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP020775_00048 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP020775_00048 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP020775_00048 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP020775_00048 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP020775_00048 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP020775_00048 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP020775_00048 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP020775_00048 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP020775_00048 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP020775_00048 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pCP020775_00049 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP020775_00049 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain HicB_lk_antitox PF15919.5 123 pCP022078_00002 - 72 3.6e-09 36.8 0.0 1 1 4.2e-13 3.8e-09 36.7 0.0 3 60 5 61 3 71 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 pCP022078_00002 - 72 0.065 12.6 0.0 1 1 7.9e-06 0.071 12.5 0.0 12 60 21 69 15 72 0.92 IRSp53/MIM homology domain AAA_25 PF13481.6 194 pCP022078_00003 - 597 1.7e-15 57.1 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP022078_00003 - 597 0.00083 18.8 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP022078_00003 - 597 0.00083 18.8 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP022078_00003 - 597 0.0013 18.5 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP022078_00003 - 597 0.0013 18.5 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 pCP022078_00003 - 597 0.003 17.3 1.1 1 2 3e-06 0.009 15.7 0.2 5 121 36 171 32 187 0.69 AAA domain AAA_24 PF13479.6 197 pCP022078_00003 - 597 0.003 17.3 1.1 2 2 0.38 1.1e+03 -0.9 0.0 98 150 268 321 210 358 0.78 AAA domain ATPase PF06745.13 231 pCP022078_00003 - 597 0.009 15.4 0.0 1 2 2.1e-05 0.062 12.6 0.0 16 70 30 83 25 214 0.86 KaiC ATPase PF06745.13 231 pCP022078_00003 - 597 0.009 15.4 0.0 2 2 0.4 1.2e+03 -1.4 0.0 135 160 327 352 318 358 0.83 KaiC CbiA PF01656.23 128 pCP022078_00003 - 597 0.19 11.8 1.3 1 1 0.00021 0.63 10.1 1.3 1 29 35 63 35 543 0.94 CobQ/CobB/MinD/ParA nucleotide binding domain GBR_NSP5 PF17580.2 176 pCP022078_00004 - 141 0.012 15.5 0.4 1 1 1.1e-06 0.02 14.7 0.4 17 64 34 81 17 89 0.78 Group B Rotavirus Non-structural protein 5 Resolvase PF00239.21 146 pCP022078_00006 - 204 2.4e-34 118.5 0.6 1 1 7.4e-38 3.3e-34 118.1 0.6 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP022078_00006 - 204 0.025 14.3 0.6 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP022078_00006 - 204 0.025 14.3 0.6 2 3 0.0021 9.6 6.1 0.0 2 36 117 152 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP022078_00006 - 204 0.025 14.3 0.6 3 3 0.0036 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP022078_00006 - 204 0.051 13.6 4.8 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP022078_00006 - 204 0.051 13.6 4.8 2 3 1.5 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP022078_00006 - 204 0.051 13.6 4.8 3 3 0.024 1.1e+02 3.0 0.1 39 55 159 175 153 177 0.91 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCP022078_00006 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP022078_00006 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP022078_00006 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pCP022078_00007 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP022078_00007 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pCP022078_00007 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pCP022078_00009 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP022078_00009 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pCP022078_00010 - 922 7.6e-52 176.4 0.8 1 1 4.1e-55 1.9e-51 175.1 0.8 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP022078_00010 - 922 1.5e-20 73.2 1.0 1 1 5.8e-24 2.6e-20 72.4 1.0 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 pCP022078_00010 - 922 3.8e-07 29.3 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 pCP022078_00010 - 922 0.038 14.1 5.5 1 5 0.46 2.1e+03 -1.4 0.1 96 202 139 253 124 278 0.55 Helicase HerA, central domain DUF87 PF01935.17 227 pCP022078_00010 - 922 0.038 14.1 5.5 2 5 0.36 1.6e+03 -1.0 0.1 88 126 264 300 242 418 0.70 Helicase HerA, central domain DUF87 PF01935.17 227 pCP022078_00010 - 922 0.038 14.1 5.5 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 pCP022078_00010 - 922 0.038 14.1 5.5 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 pCP022078_00010 - 922 0.038 14.1 5.5 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain Phage_pRha PF09669.10 88 pCP022078_00011 - 185 6.7e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pCP022078_00011 - 185 0.0015 18.6 0.0 1 1 8.6e-07 0.0031 17.6 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pCP022078_00011 - 185 0.026 14.1 0.3 1 2 0.05 1.8e+02 1.6 0.1 80 118 33 71 5 80 0.74 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pCP022078_00011 - 185 0.026 14.1 0.3 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pCP022078_00011 - 185 0.081 12.9 0.1 1 1 6.1e-05 0.22 11.5 0.0 77 131 80 130 69 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pCP022078_00011 - 185 0.83 9.7 7.1 1 3 0.019 69 3.6 0.1 40 53 12 25 3 29 0.83 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP022078_00011 - 185 0.83 9.7 7.1 2 3 0.0022 7.9 6.6 0.9 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pCP022078_00011 - 185 0.83 9.7 7.1 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 DUF3895 PF13034.6 76 pCP022078_00012 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 pCP022078_00012 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) SSB PF00436.25 104 pCP022078_00013 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pCP022078_00014 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP022078_00014 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP022078_00014 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP022078_00014 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP022078_00014 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP022078_00014 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP022078_00014 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pCP022078_00015 - 323 4.7e-28 98.9 14.1 1 1 2.7e-31 6.1e-28 98.6 14.1 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP022078_00015 - 323 0.0059 16.7 0.7 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP022078_00015 - 323 0.0059 16.7 0.7 2 2 9.1e-06 0.02 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP022078_00015 - 323 0.011 16.4 5.4 1 3 0.067 1.5e+02 3.0 0.3 92 135 104 145 41 149 0.59 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP022078_00015 - 323 0.011 16.4 5.4 2 3 0.12 2.6e+02 2.2 0.5 52 135 111 145 93 185 0.58 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP022078_00015 - 323 0.011 16.4 5.4 3 3 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pCP022078_00015 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pCP022078_00015 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pCP022078_00015 - 323 0.069 13.8 0.9 1 2 2.2 4.9e+03 -1.8 0.0 55 72 124 141 101 172 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP022078_00015 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain Allexi_40kDa PF05549.11 271 pCP022078_00015 - 323 0.81 9.1 5.0 1 2 0.21 4.8e+02 0.1 0.1 37 123 47 138 33 177 0.61 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pCP022078_00015 - 323 0.81 9.1 5.0 2 2 0.0002 0.46 10.0 1.6 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein THOC7 PF05615.13 132 pCP022078_00015 - 323 3 8.1 11.6 1 2 0.00072 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pCP022078_00015 - 323 3 8.1 11.6 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 DHR10 PF18595.1 117 pCP022078_00015 - 323 5.7 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pCP022078_00015 - 323 5.7 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain TrbL PF04610.14 215 pCP022078_00016 - 332 2.8e-30 105.7 31.4 1 2 4.7e-34 2.8e-30 105.7 31.4 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP022078_00016 - 332 2.8e-30 105.7 31.4 2 2 0.24 1.4e+03 -1.2 0.1 61 91 293 329 260 332 0.58 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP022078_00016 - 332 0.16 11.8 1.2 1 2 0.16 9.4e+02 -0.3 0.1 35 67 67 105 60 118 0.65 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP022078_00016 - 332 0.16 11.8 1.2 2 2 0.00011 0.68 9.8 0.1 28 81 238 288 209 301 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP022078_00016 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pCP022078_00017 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP022078_00017 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pCP022078_00018 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP022078_00018 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pCP022078_00019 - 295 2e-54 184.5 1.5 1 1 3.7e-58 3.3e-54 183.8 1.5 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP022078_00019 - 295 0.072 12.9 0.5 1 2 1.8e-05 0.16 11.8 0.0 1 51 1 51 1 66 0.92 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP022078_00019 - 295 0.072 12.9 0.5 2 2 1.1 9.7e+03 -3.7 0.1 50 62 130 142 124 149 0.68 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pCP022078_00020 - 391 3.3e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP022078_00020 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pCP022078_00021 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP022078_00021 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP022078_00021 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP022078_00021 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP022078_00021 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP022078_00021 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP022078_00021 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP022078_00021 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP022078_00021 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP022078_00021 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP022078_00021 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP022078_00021 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP022078_00021 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP022078_00021 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP022078_00021 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP022078_00021 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP022078_00021 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP022078_00021 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP022078_00021 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP022078_00021 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP022078_00021 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP022078_00021 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP022078_00021 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP022078_00021 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP022078_00021 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP022078_00021 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP022078_00021 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP022078_00021 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP022078_00021 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP022078_00021 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP022078_00021 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP022078_00021 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pCP022078_00022 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP022078_00022 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP022078_00022 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP022078_00022 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP022078_00022 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pCP022078_00023 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pCP022078_00023 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pCP022078_00023 - 145 0.08 12.7 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP022078_00023 - 145 3.9 7.4 5.6 1 2 0.00081 3.6 7.5 2.3 36 49 29 42 2 47 0.91 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP022078_00023 - 145 3.9 7.4 5.6 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pCP022078_00024 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pCP022078_00025 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCP022078_00025 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP022078_00025 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP022078_00025 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP022078_00025 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP022078_00025 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pCP022078_00027 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP022078_00027 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pCP022078_00028 - 676 1.4e-97 327.4 8.2 1 1 6.3e-101 1.9e-97 326.9 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP022078_00028 - 676 3.7e-12 46.4 2.7 1 2 1.9e-15 5.7e-12 45.8 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP022078_00028 - 676 3.7e-12 46.4 2.7 2 2 1.3 3.8e+03 -1.8 0.6 77 77 520 520 476 566 0.60 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP022078_00028 - 676 0.05 13.4 2.1 1 1 4.7e-05 0.14 12.0 2.1 2 27 628 656 627 664 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP022078_00028 - 676 0.05 13.9 0.7 1 2 2.9 8.5e+03 -2.9 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP022078_00028 - 676 0.05 13.9 0.7 2 2 2.7e-05 0.079 13.2 0.0 18 35 624 641 614 641 0.76 zinc-ribbon EF-hand_8 PF13833.6 55 pCP022078_00028 - 676 0.083 12.8 0.0 1 1 9.3e-05 0.28 11.1 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 pCP022078_00028 - 676 0.34 11.1 3.3 1 3 0.59 1.8e+03 -0.8 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP022078_00028 - 676 0.34 11.1 3.3 2 3 1.7 5.2e+03 -2.3 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP022078_00028 - 676 0.34 11.1 3.3 3 3 0.00026 0.78 10.0 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain PcfJ PF14284.6 144 pCP022078_00029 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP022078_00029 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pCP022078_00031 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP022078_00031 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP022078_00031 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP022078_00031 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP022078_00031 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP022078_00031 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP022078_00031 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP022078_00031 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP022078_00031 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP022078_00031 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family DUF5442 PF17514.2 107 pCP022078_00032 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pCP022078_00032 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 pCP022078_00034 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pCP022078_00034 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pCP022078_00034 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 pCP022078_00035 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCP022078_00035 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pCP022078_00035 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP022078_00035 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pCP022078_00036 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCP022078_00036 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 pCP022078_00037 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP022078_00037 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP022078_00037 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pCP022078_00037 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pCP022078_00037 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pCP022078_00037 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP022078_00037 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP022078_00037 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP022078_00037 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 pCP022078_00038 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP022078_00038 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP022078_00038 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP022078_00038 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP022078_00038 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP022078_00038 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pCP022078_00039 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP022078_00039 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pCP022078_00040 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP022078_00040 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP022078_00040 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP022078_00040 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP022078_00040 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP022078_00040 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pCP022078_00041 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pCP022078_00042 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP022078_00042 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP022078_00042 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP022078_00042 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP022078_00042 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP022078_00042 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP022078_00042 - 1932 9.9e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP022078_00042 - 1932 9.9e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP022078_00042 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP022078_00042 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP022078_00042 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP022078_00042 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 pCP022078_00043 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pCP022078_00043 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 pCP022078_00044 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP022078_00044 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pCP022078_00045 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP022078_00045 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP022078_00045 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP022078_00045 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP022078_00045 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP022078_00045 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP022078_00045 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pCP022078_00045 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP022078_00045 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pCP022078_00045 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP022078_00045 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 pCP022078_00046 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pCP022078_00046 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pCP022078_00046 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pCP022078_00046 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP022078_00046 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 pCP022078_00049 - 410 2.4e-08 34.2 0.1 1 2 1.1 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pCP022078_00049 - 410 2.4e-08 34.2 0.1 2 2 1.1e-11 6.4e-08 32.8 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pCP022078_00049 - 410 0.016 15.4 0.1 1 2 0.018 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pCP022078_00049 - 410 0.016 15.4 0.1 2 2 0.00021 1.2 9.4 0.0 15 83 283 359 277 378 0.81 Retrotransposon gag protein 5_3_exonuc PF01367.20 97 pCP022078_00049 - 410 0.33 11.6 2.5 1 2 0.47 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP022078_00049 - 410 0.33 11.6 2.5 2 2 7.8e-05 0.47 11.1 0.4 15 81 322 384 321 405 0.71 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pCP022078_00050 - 87 0.0072 16.3 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pCP022078_00050 - 87 0.0072 16.3 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pCP022078_00050 - 87 0.12 12.4 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain TOPRIM_C PF16898.5 128 pCP022078_00051 - 69 0.029 14.7 1.5 1 1 1.7e-06 0.031 14.6 1.5 63 124 8 68 2 69 0.88 C-terminal associated domain of TOPRIM Pkinase PF00069.25 264 pCP022078_00052 - 189 4.3e-19 68.9 4.7 1 1 1.1e-22 4.9e-19 68.7 4.7 52 237 1 180 1 189 0.77 Protein kinase domain Pkinase_Tyr PF07714.17 259 pCP022078_00052 - 189 3.7e-18 65.8 0.5 1 1 8.2e-22 3.7e-18 65.8 0.5 55 164 1 108 1 185 0.81 Protein tyrosine kinase Pkinase_fungal PF17667.1 408 pCP022078_00052 - 189 1.3e-06 27.4 0.6 1 1 3.8e-10 1.7e-06 27.1 0.6 314 364 53 100 37 123 0.79 Fungal protein kinase Kinase-like PF14531.6 288 pCP022078_00052 - 189 0.072 12.4 0.0 1 2 4.7e-05 0.21 10.9 0.0 136 186 36 87 18 112 0.78 Kinase-like Kinase-like PF14531.6 288 pCP022078_00052 - 189 0.072 12.4 0.0 2 2 0.2 9.2e+02 -1.1 0.0 94 124 120 150 94 179 0.58 Kinase-like W2 PF02020.18 79 pCP022471_00001 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pCP022471_00001 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pCP022471_00001 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 pCP022471_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCP022471_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pCP022471_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP022471_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pCP022471_00003 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCP022471_00003 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 pCP022471_00004 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP022471_00004 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP022471_00004 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pCP022471_00004 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pCP022471_00004 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pCP022471_00004 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP022471_00004 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP022471_00004 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP022471_00004 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 pCP022471_00005 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP022471_00005 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP022471_00005 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP022471_00005 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP022471_00005 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP022471_00005 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pCP022471_00006 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP022471_00006 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pCP022471_00007 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP022471_00007 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP022471_00007 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP022471_00007 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP022471_00007 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP022471_00007 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pCP022471_00008 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pCP022471_00009 - 1932 1.6e-16 60.0 0.9 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP022471_00009 - 1932 1.6e-16 60.0 0.9 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP022471_00009 - 1932 1.6e-16 60.0 0.9 3 3 1.4 4.8e+03 -4.1 0.0 173 197 1880 1905 1862 1920 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP022471_00009 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP022471_00009 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP022471_00009 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.5 36 121 1801 1904 1748 1930 0.60 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP022471_00009 - 1932 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP022471_00009 - 1932 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP022471_00009 - 1932 7.8e-06 25.8 1.5 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP022471_00009 - 1932 7.8e-06 25.8 1.5 2 2 0.13 4.8e+02 0.4 0.0 119 152 1883 1921 1829 1929 0.75 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP022471_00009 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP022471_00009 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 pCP022471_00010 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pCP022471_00010 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 pCP022471_00011 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP022471_00011 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pCP022471_00012 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP022471_00012 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP022471_00012 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP022471_00012 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pCP022471_00012 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP022471_00012 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP022471_00012 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pCP022471_00012 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP022471_00012 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pCP022471_00012 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP022471_00012 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE ESP PF16590.5 91 pCP022471_00013 - 93 0.55 10.5 4.6 1 2 0.015 2.7e+02 1.9 0.6 26 71 3 45 2 50 0.63 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP022471_00013 - 93 0.55 10.5 4.6 2 2 1.5e-05 0.27 11.5 0.6 26 58 43 78 41 91 0.79 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 pCP022471_00015 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pCP022471_00015 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pCP022471_00016 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pCP022471_00016 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 pCP022471_00016 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pCP022471_00016 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP022471_00016 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pCP022471_00017 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pCP022471_00017 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) UBA_6 PF18039.1 42 pCP022471_00018 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 pCP022471_00018 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pCP022471_00018 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 pCP022471_00018 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 pCP022471_00019 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pCP022471_00019 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 pCP022471_00019 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pCP022471_00021 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pCP022471_00022 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pCP022471_00023 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pCP022471_00023 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP022471_00023 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP022471_00023 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP022471_00023 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pCP022471_00023 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP022471_00023 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pCP022471_00023 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pCP022471_00023 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pCP022471_00023 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pCP022471_00023 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pCP022471_00023 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 pCP022471_00024 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP022471_00024 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP022471_00024 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP022471_00024 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP022471_00024 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP022471_00024 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP022471_00024 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pCP022471_00024 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP022471_00024 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pCP022471_00024 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pCP022471_00025 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP022471_00025 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pCP022471_00025 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pCP022471_00027 - 87 3.5e-13 49.6 6.7 1 1 4.5e-17 4e-13 49.4 6.7 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP022471_00027 - 87 0.17 11.8 4.4 1 1 2.6e-05 0.23 11.3 4.4 78 135 37 87 9 87 0.70 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pCP022471_00028 - 922 4.9e-50 170.5 0.5 1 1 1.9e-53 1.2e-49 169.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP022471_00028 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pCP022471_00028 - 922 0.048 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pCP022471_00029 - 188 2e-29 102.0 0.1 1 1 1.9e-33 3.3e-29 101.3 0.1 2 88 24 122 23 122 0.83 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 pCP022471_00030 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pCP022471_00030 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pCP022471_00030 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pCP022471_00030 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP022471_00030 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP022471_00030 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pCP022471_00030 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP022471_00030 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pCP022471_00030 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pCP022471_00030 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pCP022471_00030 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pCP022471_00030 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP022471_00030 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pCP022471_00030 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pCP022471_00031 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pCP022471_00032 - 91 0.00046 19.9 6.9 1 2 5.3e-08 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP022471_00032 - 91 0.00046 19.9 6.9 2 2 0.014 1.3e+02 2.5 0.2 31 52 57 78 56 80 0.82 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP022471_00032 - 91 0.0053 17.3 1.0 1 1 6.9e-07 0.0062 17.1 1.0 21 87 9 81 1 85 0.90 FliG N-terminal domain T4SS PF07996.11 197 pCP022471_00033 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP022471_00033 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP022471_00033 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pCP022471_00033 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP022471_00033 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pCP022471_00033 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pCP022471_00033 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pCP022471_00033 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP022471_00033 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 pCP022471_00033 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pCP022471_00033 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pCP022471_00033 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pCP022471_00033 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 pCP022471_00033 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pCP022471_00033 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain TrbL PF04610.14 215 pCP022471_00034 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP022471_00034 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP022471_00034 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP022471_00034 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pCP022471_00034 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pCP022471_00035 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pCP022471_00035 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pCP022471_00036 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pCP022471_00036 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pCP022471_00037 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pCP022471_00037 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pCP022471_00037 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pCP022471_00038 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP022471_00038 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pCP022471_00039 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP022471_00039 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP022471_00039 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP022471_00039 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP022471_00039 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pCP022471_00039 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pCP022471_00039 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pCP022471_00039 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP022471_00039 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP022471_00039 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP022471_00039 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP022471_00039 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pCP022471_00039 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pCP022471_00039 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pCP022471_00039 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pCP022471_00039 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pCP022471_00039 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pCP022471_00039 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pCP022471_00039 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pCP022471_00039 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pCP022471_00039 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pCP022471_00039 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pCP022471_00039 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP022471_00039 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP022471_00039 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pCP022471_00039 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pCP022471_00039 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pCP022471_00039 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pCP022471_00039 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP022471_00039 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pCP022471_00039 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pCP022471_00039 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pCP022471_00040 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP022471_00040 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP022471_00040 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP022471_00040 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pCP022471_00040 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pCP022471_00041 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pCP022471_00041 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pCP022471_00041 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pCP022471_00041 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pCP022471_00041 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pCP022471_00042 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pCP022471_00043 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pCP022471_00043 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pCP022471_00043 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pCP022471_00043 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP022471_00043 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pCP022471_00043 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pCP022471_00045 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pCP022471_00045 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pCP022471_00046 - 730 5.7e-97 325.3 8.0 1 1 7.6e-100 8e-97 324.8 8.0 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP022471_00046 - 730 5.5e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP022471_00046 - 730 5.5e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP022471_00046 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP022471_00046 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP022471_00046 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP022471_00046 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP022471_00046 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP022471_00046 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP022471_00046 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP022471_00046 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP022471_00046 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pCP022471_00046 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pCP022471_00046 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pCP022471_00046 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP022471_00046 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP022471_00046 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP022471_00046 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pCP022471_00046 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pCP022471_00046 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP022471_00046 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pCP022471_00046 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP022471_00046 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP022471_00046 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP022471_00046 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP022471_00046 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP022471_00046 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP022471_00046 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP022471_00046 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP022471_00046 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP022471_00046 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP022471_00046 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP022471_00046 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP022471_00046 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pCP022471_00047 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP022471_00047 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pCP022471_00049 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP022471_00049 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP022471_00049 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP022471_00049 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP022471_00049 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP022471_00049 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP022471_00049 - 639 0.00029 21.1 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP022471_00049 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP022471_00049 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP022471_00049 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 pCP022471_00049 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 pCP022471_00050 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pCP022471_00050 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) PDDEXK_4 PF14281.6 180 pCP023447_00001 - 472 3e-38 131.8 13.1 1 3 1.7e-42 3e-38 131.8 13.1 2 176 27 218 26 220 0.94 PD-(D/E)XK nuclease superfamily PDDEXK_4 PF14281.6 180 pCP023447_00001 - 472 3e-38 131.8 13.1 2 3 0.0036 65 3.6 0.5 116 170 360 412 327 422 0.83 PD-(D/E)XK nuclease superfamily PDDEXK_4 PF14281.6 180 pCP023447_00001 - 472 3e-38 131.8 13.1 3 3 0.18 3.2e+03 -1.9 0.0 18 32 431 445 430 462 0.75 PD-(D/E)XK nuclease superfamily Eco57I PF07669.11 106 pCP023447_00002 - 1246 2.1e-19 70.0 0.1 1 1 3.4e-22 1.2e-18 67.5 0.1 3 105 808 917 805 918 0.95 Eco57I restriction-modification methylase TaqI_C PF12950.7 120 pCP023447_00002 - 1246 1.8e-12 47.4 1.7 1 4 1.1 4e+03 -2.1 0.3 91 115 263 290 211 322 0.63 TaqI-like C-terminal specificity domain TaqI_C PF12950.7 120 pCP023447_00002 - 1246 1.8e-12 47.4 1.7 2 4 1.1 4e+03 -2.2 0.0 75 93 356 374 343 383 0.77 TaqI-like C-terminal specificity domain TaqI_C PF12950.7 120 pCP023447_00002 - 1246 1.8e-12 47.4 1.7 3 4 1.2 4.2e+03 -2.2 0.1 5 35 605 637 602 720 0.58 TaqI-like C-terminal specificity domain TaqI_C PF12950.7 120 pCP023447_00002 - 1246 1.8e-12 47.4 1.7 4 4 5.1e-16 1.8e-12 47.4 1.7 2 120 1028 1185 1027 1185 0.84 TaqI-like C-terminal specificity domain Mrr_cat PF04471.12 115 pCP023447_00002 - 1246 0.018 15.1 0.0 1 2 3.1e-05 0.11 12.5 0.0 16 67 59 118 49 139 0.80 Restriction endonuclease Mrr_cat PF04471.12 115 pCP023447_00002 - 1246 0.018 15.1 0.0 2 2 2.6 9.4e+03 -3.4 0.0 79 100 996 1020 989 1037 0.60 Restriction endonuclease ACP_PD PF04336.12 105 pCP023447_00002 - 1246 0.019 15.4 0.2 1 2 0.13 4.6e+02 1.3 0.0 1 40 937 980 937 1002 0.68 Acyl carrier protein phosphodiesterase ACP_PD PF04336.12 105 pCP023447_00002 - 1246 0.019 15.4 0.2 2 2 0.00034 1.2 9.6 0.1 37 104 1020 1085 1001 1086 0.70 Acyl carrier protein phosphodiesterase DUF4756 PF15948.5 158 pCP023447_00002 - 1246 0.41 10.5 7.1 1 2 2.5e-05 0.089 12.6 0.8 8 81 656 729 650 751 0.75 Domain of unknown function (DUF4756) DUF4756 PF15948.5 158 pCP023447_00002 - 1246 0.41 10.5 7.1 2 2 0.3 1.1e+03 -0.6 0.8 59 106 1187 1232 1179 1243 0.83 Domain of unknown function (DUF4756) Pentapeptide_3 PF13576.6 48 pCP023447_00003 - 663 6.7e-11 42.2 11.9 1 5 0.037 6.6e+02 0.6 0.1 11 19 135 143 120 147 0.69 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 48 pCP023447_00003 - 663 6.7e-11 42.2 11.9 2 5 0.0037 66 3.8 2.1 1 33 182 204 158 207 0.60 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 48 pCP023447_00003 - 663 6.7e-11 42.2 11.9 3 5 0.08 1.4e+03 -0.5 0.0 27 37 239 250 218 253 0.51 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 48 pCP023447_00003 - 663 6.7e-11 42.2 11.9 4 5 3.7e-08 0.00066 19.8 2.3 21 47 260 289 257 290 0.84 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 48 pCP023447_00003 - 663 6.7e-11 42.2 11.9 5 5 2.7e-13 4.9e-09 36.2 2.3 1 43 275 318 275 323 0.95 Pentapeptide repeats (9 copies) SIMPL PF04402.14 200 pCP023447_00004 - 233 3.7e-14 53.7 0.6 1 1 1.3e-17 4.5e-14 53.4 0.6 1 160 37 205 37 227 0.71 Protein of unknown function (DUF541) DUF4116 PF13475.6 49 pCP023447_00004 - 233 0.036 13.8 1.6 1 2 1e-05 0.036 13.8 1.6 11 43 60 95 56 108 0.77 Domain of unknown function (DUF4116) DUF4116 PF13475.6 49 pCP023447_00004 - 233 0.036 13.8 1.6 2 2 1.6 5.7e+03 -2.9 0.0 10 23 152 165 150 167 0.71 Domain of unknown function (DUF4116) ATR13 PF16829.5 101 pCP023447_00004 - 233 0.081 13.3 0.5 1 2 0.00025 0.88 10.0 0.0 15 82 23 86 12 106 0.82 Avirulence protein ATR13, RxLR effector ATR13 PF16829.5 101 pCP023447_00004 - 233 0.081 13.3 0.5 2 2 0.15 5.5e+02 1.0 0.1 28 80 177 228 146 232 0.69 Avirulence protein ATR13, RxLR effector Nudix_N PF12535.8 56 pCP023447_00004 - 233 0.1 12.2 0.1 1 1 6e-05 0.22 11.2 0.1 8 47 139 179 136 186 0.85 Hydrolase of X-linked nucleoside diphosphate N terminal DUF3139 PF11337.8 83 pCP023447_00004 - 233 0.91 10.2 8.8 1 3 0.14 5e+02 1.4 0.1 9 55 10 49 1 69 0.52 Protein of unknown function (DUF3139) DUF3139 PF11337.8 83 pCP023447_00004 - 233 0.91 10.2 8.8 2 3 3.9e-05 0.14 12.8 1.7 35 59 75 99 51 118 0.76 Protein of unknown function (DUF3139) DUF3139 PF11337.8 83 pCP023447_00004 - 233 0.91 10.2 8.8 3 3 0.98 3.5e+03 -1.3 0.1 39 82 153 161 119 192 0.64 Protein of unknown function (DUF3139) MFS_1 PF07690.16 353 pCP023447_00005 - 400 1.1e-42 146.2 39.9 1 2 2.5e-46 1.1e-42 146.2 39.9 2 351 20 361 19 363 0.91 Major Facilitator Superfamily MFS_1 PF07690.16 353 pCP023447_00005 - 400 1.1e-42 146.2 39.9 2 2 0.072 3.2e+02 -0.0 0.9 135 172 360 394 354 400 0.51 Major Facilitator Superfamily Sugar_tr PF00083.24 452 pCP023447_00005 - 400 3.9e-10 39.2 8.9 1 3 8.6e-14 3.9e-10 39.2 8.9 17 212 20 211 16 221 0.93 Sugar (and other) transporter Sugar_tr PF00083.24 452 pCP023447_00005 - 400 3.9e-10 39.2 8.9 2 3 0.081 3.6e+02 -0.3 3.0 317 361 254 300 198 334 0.65 Sugar (and other) transporter Sugar_tr PF00083.24 452 pCP023447_00005 - 400 3.9e-10 39.2 8.9 3 3 4 1.8e+04 -11.9 16.1 385 433 344 392 231 400 0.55 Sugar (and other) transporter MFS_3 PF05977.13 522 pCP023447_00005 - 400 2.5e-06 26.2 18.2 1 1 6.6e-10 3e-06 25.9 18.2 60 397 64 398 13 400 0.82 Transmembrane secretion effector MFS_2 PF13347.6 427 pCP023447_00005 - 400 1.2e-05 24.0 43.0 1 3 3.3e-06 0.015 13.9 9.7 226 383 16 164 7 166 0.87 MFS/sugar transport protein MFS_2 PF13347.6 427 pCP023447_00005 - 400 1.2e-05 24.0 43.0 2 3 1.3e-07 0.00059 18.5 22.9 148 371 144 367 133 370 0.73 MFS/sugar transport protein MFS_2 PF13347.6 427 pCP023447_00005 - 400 1.2e-05 24.0 43.0 3 3 0.099 4.4e+02 -0.8 2.0 151 189 356 393 338 399 0.48 MFS/sugar transport protein DUF2130 PF09903.9 257 pCP023447_00006 - 449 1.7e-46 158.6 15.9 1 4 0.095 4.3e+02 -0.0 2.8 220 255 30 68 15 74 0.52 Uncharacterized protein conserved in bacteria (DUF2130) DUF2130 PF09903.9 257 pCP023447_00006 - 449 1.7e-46 158.6 15.9 2 4 4 1.8e+04 -9.4 20.8 171 229 76 131 57 151 0.53 Uncharacterized protein conserved in bacteria (DUF2130) DUF2130 PF09903.9 257 pCP023447_00006 - 449 1.7e-46 158.6 15.9 3 4 4 1.8e+04 -5.7 8.1 166 213 144 191 139 194 0.65 Uncharacterized protein conserved in bacteria (DUF2130) DUF2130 PF09903.9 257 pCP023447_00006 - 449 1.7e-46 158.6 15.9 4 4 3.8e-50 1.7e-46 158.6 15.9 3 243 193 421 191 443 0.92 Uncharacterized protein conserved in bacteria (DUF2130) zf-ribbon_3 PF13248.6 26 pCP023447_00006 - 449 0.19 11.2 0.9 1 2 6.8e-05 0.3 10.5 0.1 3 26 10 19 5 22 0.58 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP023447_00006 - 449 0.19 11.2 0.9 2 2 1.7 7.6e+03 -3.4 0.0 7 11 268 272 267 273 0.63 zinc-ribbon domain RNA_pol_N PF01194.17 59 pCP023447_00006 - 449 0.53 10.6 2.0 1 4 0.00083 3.7 7.9 0.0 5 38 10 62 9 67 0.72 RNA polymerases N / 8 kDa subunit RNA_pol_N PF01194.17 59 pCP023447_00006 - 449 0.53 10.6 2.0 2 4 3.7 1.6e+04 -3.8 0.0 13 30 204 221 203 231 0.76 RNA polymerases N / 8 kDa subunit RNA_pol_N PF01194.17 59 pCP023447_00006 - 449 0.53 10.6 2.0 3 4 0.91 4.1e+03 -1.8 0.0 26 41 278 293 257 298 0.67 RNA polymerases N / 8 kDa subunit RNA_pol_N PF01194.17 59 pCP023447_00006 - 449 0.53 10.6 2.0 4 4 0.64 2.8e+03 -1.3 0.1 14 38 377 409 374 414 0.62 RNA polymerases N / 8 kDa subunit zf-ACC PF17848.1 26 pCP023447_00006 - 449 1.6 8.9 5.6 1 3 0.00039 1.7 8.8 0.3 2 11 10 19 10 19 0.87 Acetyl-coA carboxylase zinc finger domain zf-ACC PF17848.1 26 pCP023447_00006 - 449 1.6 8.9 5.6 2 3 0.26 1.2e+03 -0.3 0.2 11 21 193 203 191 203 0.86 Acetyl-coA carboxylase zinc finger domain zf-ACC PF17848.1 26 pCP023447_00006 - 449 1.6 8.9 5.6 3 3 0.28 1.2e+03 -0.4 0.0 7 13 269 275 268 277 0.90 Acetyl-coA carboxylase zinc finger domain Cytochrom_C PF00034.21 92 pCP023447_00007 - 347 3.7e-14 53.6 0.0 1 2 0.0033 8.4 7.6 0.2 10 90 96 171 87 173 0.41 Cytochrome c Cytochrom_C PF00034.21 92 pCP023447_00007 - 347 3.7e-14 53.6 0.0 2 2 6.9e-14 1.8e-10 41.8 0.0 3 90 203 287 201 288 0.88 Cytochrome c Cytochrome_CBB3 PF13442.6 67 pCP023447_00007 - 347 5.7e-11 42.6 0.0 1 2 0.00052 1.3 9.4 0.0 11 25 94 119 85 168 0.57 Cytochrome C oxidase, cbb3-type, subunit III Cytochrome_CBB3 PF13442.6 67 pCP023447_00007 - 347 5.7e-11 42.6 0.0 2 2 1.1e-10 2.8e-07 30.7 0.0 2 67 200 285 199 285 0.73 Cytochrome C oxidase, cbb3-type, subunit III Cytochrome_C7 PF14522.6 73 pCP023447_00007 - 347 0.016 15.2 0.0 1 2 0.0012 3.1 7.9 0.0 42 59 89 107 74 126 0.77 Cytochrome c7 and related cytochrome c Cytochrome_C7 PF14522.6 73 pCP023447_00007 - 347 0.016 15.2 0.0 2 2 0.0094 24 5.0 0.0 14 22 210 218 191 234 0.67 Cytochrome c7 and related cytochrome c Cytochrom_C550 PF14495.6 136 pCP023447_00007 - 347 0.022 14.5 0.7 1 3 0.63 1.6e+03 -1.3 0.0 34 43 95 104 79 114 0.79 Cytochrome c-550 domain Cytochrom_C550 PF14495.6 136 pCP023447_00007 - 347 0.022 14.5 0.7 2 3 4.1e-05 0.11 12.3 0.0 27 43 202 218 193 235 0.77 Cytochrome c-550 domain Cytochrom_C550 PF14495.6 136 pCP023447_00007 - 347 0.022 14.5 0.7 3 3 1.5 3.9e+03 -2.5 0.0 107 119 273 285 271 287 0.90 Cytochrome c-550 domain Paired_CXXCH_1 PF09699.10 42 pCP023447_00007 - 347 0.042 13.6 0.3 1 2 0.0029 7.4 6.4 0.1 24 40 89 105 79 107 0.75 Doubled CXXCH motif (Paired_CXXCH_1) Paired_CXXCH_1 PF09699.10 42 pCP023447_00007 - 347 0.042 13.6 0.3 2 2 0.0087 22 4.9 0.0 7 15 210 218 201 233 0.76 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_c3_2 PF14537.6 80 pCP023447_00007 - 347 0.094 13.2 0.1 1 2 0.0079 20 5.7 0.0 54 66 91 103 73 112 0.64 Cytochrome c3 Cytochrom_c3_2 PF14537.6 80 pCP023447_00007 - 347 0.094 13.2 0.1 2 2 0.012 30 5.2 0.0 22 36 205 219 197 235 0.72 Cytochrome c3 DUF3365 PF11845.8 157 pCP023447_00007 - 347 0.19 12.1 0.2 1 2 0.08 2e+02 2.2 0.2 115 126 95 106 24 136 0.85 Protein of unknown function (DUF3365) DUF3365 PF11845.8 157 pCP023447_00007 - 347 0.19 12.1 0.2 2 2 0.0015 3.9 7.8 0.0 114 125 207 219 162 234 0.85 Protein of unknown function (DUF3365) Peptidase_S49_N PF08496.10 153 pCP023447_00008 - 215 0.034 14.2 0.3 1 1 3.8e-06 0.068 13.2 0.3 8 69 37 99 29 135 0.71 Peptidase family S49 N-terminal GTP_EFTU PF00009.27 194 pCP023447_00009 - 602 2.2e-54 184.0 0.4 1 1 2e-57 3.5e-54 183.3 0.4 1 193 2 194 2 195 0.91 Elongation factor Tu GTP binding domain EFG_C PF00679.24 89 pCP023447_00009 - 602 2.8e-22 78.6 0.0 1 1 4e-25 7.1e-22 77.2 0.0 3 86 395 478 393 481 0.96 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 74 pCP023447_00009 - 602 9.2e-11 42.0 1.5 1 1 1.3e-13 2.4e-10 40.7 1.5 1 72 218 286 218 288 0.92 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 114 pCP023447_00009 - 602 8.2e-07 29.1 0.4 1 1 9e-10 1.6e-06 28.2 0.4 2 114 7 128 6 128 0.78 50S ribosome-binding GTPase Septin PF00735.18 281 pCP023447_00009 - 602 0.00062 19.1 0.2 1 1 6e-07 0.0011 18.3 0.2 6 75 6 80 4 98 0.76 Septin Dynamin_N PF00350.23 168 pCP023447_00009 - 602 0.0046 17.0 0.1 1 1 2.8e-05 0.05 13.7 0.1 62 168 31 129 11 129 0.69 Dynamin family FeoB_N PF02421.18 156 pCP023447_00009 - 602 0.011 15.3 0.9 1 3 0.83 1.5e+03 -1.4 0.0 2 22 6 26 5 32 0.83 Ferrous iron transport protein B FeoB_N PF02421.18 156 pCP023447_00009 - 602 0.011 15.3 0.9 2 3 0.00011 0.2 11.2 0.2 32 117 52 131 44 171 0.81 Ferrous iron transport protein B FeoB_N PF02421.18 156 pCP023447_00009 - 602 0.011 15.3 0.9 3 3 0.4 7.2e+02 -0.4 0.0 101 146 301 346 222 353 0.74 Ferrous iron transport protein B SRPRB PF09439.10 181 pCP023447_00009 - 602 0.049 13.1 1.0 1 2 6.8e-05 0.12 11.8 0.1 5 83 6 98 2 102 0.64 Signal recognition particle receptor beta subunit SRPRB PF09439.10 181 pCP023447_00009 - 602 0.049 13.1 1.0 2 2 3.4 6.2e+03 -3.6 0.1 131 148 328 345 326 357 0.73 Signal recognition particle receptor beta subunit AIG1 PF04548.16 212 pCP023447_00009 - 602 0.058 12.7 0.0 1 1 6.5e-05 0.12 11.7 0.0 32 78 50 96 32 105 0.81 AIG1 family EFG_II PF14492.6 75 pCP023447_00009 - 602 0.085 13.0 0.1 1 1 0.00012 0.21 11.7 0.1 18 66 327 374 320 382 0.82 Elongation Factor G, domain II PTS_EIIA_2 PF00359.22 144 pCP023447_00010 - 107 0.00096 19.1 2.8 1 1 2.6e-07 0.0016 18.4 2.7 103 142 39 77 11 79 0.86 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FANCI_S2 PF14676.6 164 pCP023447_00010 - 107 0.028 14.7 0.9 1 1 6.8e-06 0.04 14.2 0.9 57 115 3 61 1 84 0.85 FANCI solenoid 2 Rotamase PF00639.21 97 pCP023447_00010 - 107 0.087 13.8 0.1 1 1 1.9e-05 0.11 13.4 0.1 2 85 9 89 9 93 0.90 PPIC-type PPIASE domain Flg_hook PF02120.16 85 pCP023447_00011 - 596 2.2e-14 53.1 1.0 1 2 0.17 3e+03 -1.8 0.0 55 76 146 167 145 169 0.88 Flagellar hook-length control protein FliK Flg_hook PF02120.16 85 pCP023447_00011 - 596 2.2e-14 53.1 1.0 2 2 6.7e-18 1.2e-13 50.7 0.3 6 84 483 560 479 562 0.93 Flagellar hook-length control protein FliK FlgD_ig PF13860.6 79 pCP023447_00012 - 294 1.8e-18 66.1 0.1 1 1 8.7e-22 5.2e-18 64.7 0.1 2 78 128 209 127 210 0.93 FlgD Ig-like domain FlgD PF03963.14 75 pCP023447_00012 - 294 1.1e-16 60.9 11.6 1 2 1.8e-20 1.1e-16 60.9 11.6 4 74 24 94 8 95 0.80 Flagellar hook capping protein - N-terminal region FlgD PF03963.14 75 pCP023447_00012 - 294 1.1e-16 60.9 11.6 2 2 1.1 6.9e+03 -2.5 0.1 63 74 97 108 96 109 0.84 Flagellar hook capping protein - N-terminal region FLgD_tudor PF13861.6 58 pCP023447_00012 - 294 1.8e-05 24.9 0.0 1 1 6e-09 3.6e-05 23.9 0.0 2 58 111 248 110 248 0.97 FlgD Tudor-like domain Flg_bbr_C PF06429.13 74 pCP023447_00013 - 545 1.2e-19 70.1 4.4 1 2 0.24 1.1e+03 -0.1 0.0 21 44 417 439 401 445 0.72 Flagellar basal body rod FlgEFG protein C-terminal Flg_bbr_C PF06429.13 74 pCP023447_00013 - 545 1.2e-19 70.1 4.4 2 2 7.6e-23 3.4e-19 68.7 1.8 1 74 463 543 463 543 0.91 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 31 pCP023447_00013 - 545 7.3e-08 32.2 1.9 1 2 6.1e-11 2.7e-07 30.4 1.9 1 31 5 35 5 35 0.90 Flagella basal body rod protein Flg_bb_rod PF00460.20 31 pCP023447_00013 - 545 7.3e-08 32.2 1.9 2 2 2.5 1.1e+04 -3.6 0.0 7 17 284 294 284 295 0.84 Flagella basal body rod protein VWA_N PF08399.11 123 pCP023447_00013 - 545 0.046 14.2 0.0 1 1 3.4e-05 0.15 12.5 0.0 46 91 162 205 142 212 0.88 VWA N-terminal DUF3659 PF12396.8 61 pCP023447_00013 - 545 0.13 12.1 0.2 1 3 0.029 1.3e+02 2.6 0.0 39 57 114 133 109 135 0.82 Protein of unknown function (DUF3659) DUF3659 PF12396.8 61 pCP023447_00013 - 545 0.13 12.1 0.2 2 3 0.009 41 4.2 0.0 13 29 345 361 341 374 0.82 Protein of unknown function (DUF3659) DUF3659 PF12396.8 61 pCP023447_00013 - 545 0.13 12.1 0.2 3 3 0.22 9.9e+02 -0.2 0.1 38 38 460 460 429 495 0.54 Protein of unknown function (DUF3659) FapA PF03961.13 454 pCP023447_00014 - 495 4.3e-54 183.8 24.2 1 1 2.4e-58 4.3e-54 183.8 24.2 46 433 17 424 2 466 0.93 Flagellar Assembly Protein A Ribosomal_L1 PF00687.21 204 pCP023447_00015 - 138 0.013 15.2 0.1 1 1 1.7e-06 0.015 15.0 0.1 70 140 31 106 12 126 0.79 Ribosomal protein L1p/L10e family Rep_4 PF05797.11 344 pCP023447_00015 - 138 0.021 14.0 0.5 1 1 4.1e-06 0.037 13.1 0.3 20 65 89 134 82 137 0.87 Yeast trans-acting factor (REP1/REP2) Hemerythrin PF01814.23 131 pCP023447_00016 - 239 5.9e-08 33.4 3.1 1 2 1.3e-11 5.9e-08 33.4 3.1 6 124 16 125 14 130 0.88 Hemerythrin HHE cation binding domain Hemerythrin PF01814.23 131 pCP023447_00016 - 239 5.9e-08 33.4 3.1 2 2 2.6 1.2e+04 -3.2 0.1 38 52 214 228 202 229 0.66 Hemerythrin HHE cation binding domain CC2D2AN-C2 PF15625.6 173 pCP023447_00016 - 239 0.09 12.5 0.1 1 2 0.06 2.7e+02 1.2 0.1 62 122 15 76 2 101 0.72 CC2D2A N-terminal C2 domain CC2D2AN-C2 PF15625.6 173 pCP023447_00016 - 239 0.09 12.5 0.1 2 2 0.0002 0.88 9.3 0.0 69 125 170 233 151 239 0.73 CC2D2A N-terminal C2 domain PulA_N1 PF17999.1 85 pCP023447_00016 - 239 0.57 11.0 10.4 1 3 2.3 1e+04 -2.7 0.1 23 44 20 41 12 46 0.57 Pullulanase N1-terminal domain PulA_N1 PF17999.1 85 pCP023447_00016 - 239 0.57 11.0 10.4 2 3 2.2e-05 0.098 13.4 1.8 9 75 57 124 54 131 0.93 Pullulanase N1-terminal domain PulA_N1 PF17999.1 85 pCP023447_00016 - 239 0.57 11.0 10.4 3 3 0.041 1.8e+02 2.9 0.2 34 60 147 174 128 180 0.77 Pullulanase N1-terminal domain RPA_interact_C PF14768.6 81 pCP023447_00016 - 239 4.5 7.9 9.8 1 3 0.43 1.9e+03 -0.5 0.2 41 51 37 47 13 90 0.59 Replication protein A interacting C-terminal RPA_interact_C PF14768.6 81 pCP023447_00016 - 239 4.5 7.9 9.8 2 3 0.0081 36 5.0 0.2 8 28 156 177 153 185 0.75 Replication protein A interacting C-terminal RPA_interact_C PF14768.6 81 pCP023447_00016 - 239 4.5 7.9 9.8 3 3 0.00098 4.4 7.9 0.6 8 49 183 228 178 235 0.82 Replication protein A interacting C-terminal Na_sulph_symp PF00939.19 472 pCP023447_00017 - 114 3.4e-25 89.0 0.1 1 1 4.4e-29 3.9e-25 88.8 0.1 95 182 1 88 1 98 0.96 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 300 pCP023447_00017 - 114 0.014 14.6 0.0 1 1 1.7e-06 0.015 14.5 0.0 47 111 1 68 1 84 0.90 Citrate transporter Na_sulph_symp PF00939.19 472 pCP023447_00018 - 71 4e-09 36.0 1.0 1 1 7.6e-13 6.8e-09 35.3 1.0 234 284 10 60 1 65 0.95 Sodium:sulfate symporter transmembrane region ETRAMP PF09716.10 83 pCP023447_00018 - 71 0.026 14.6 0.0 1 1 3.3e-06 0.029 14.4 0.0 31 75 23 65 5 69 0.77 Malarial early transcribed membrane protein (ETRAMP) Na_sulph_symp PF00939.19 472 pCP023447_00019 - 79 1.9e-14 53.6 4.1 1 1 3.3e-18 1.9e-14 53.6 4.1 280 349 9 78 1 79 0.92 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 300 pCP023447_00019 - 79 0.0066 15.7 4.0 1 1 1.4e-06 0.0085 15.3 4.0 207 240 31 78 7 79 0.75 Citrate transporter AGTRAP PF06396.11 148 pCP023447_00019 - 79 0.095 12.5 1.3 1 1 1.7e-05 0.1 12.4 1.3 29 92 4 67 1 77 0.84 Angiotensin II, type I receptor-associated protein (AGTRAP) Na_sulph_symp PF00939.19 472 pCP023447_00020 - 83 1.9e-14 53.6 11.4 1 1 1.1e-18 1.9e-14 53.6 11.4 395 470 6 81 1 83 0.90 Sodium:sulfate symporter transmembrane region tRNA_Me_trans PF03054.16 356 pCP023447_00021 - 338 1.2e-108 363.1 1.7 1 1 5.4e-112 1.4e-108 362.9 1.7 1 356 1 337 1 337 0.96 tRNA methyl transferase ATP_bind_3 PF01171.20 182 pCP023447_00021 - 338 5.6e-07 29.5 0.0 1 1 5.6e-10 1.4e-06 28.2 0.0 1 158 2 169 2 174 0.83 PP-loop family ThiI PF02568.14 197 pCP023447_00021 - 338 1.4e-06 28.1 0.0 1 2 1.4e-08 3.5e-05 23.5 0.0 5 57 2 56 1 121 0.73 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 pCP023447_00021 - 338 1.4e-06 28.1 0.0 2 2 0.044 1.1e+02 2.2 0.0 138 169 150 181 140 192 0.71 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 210 pCP023447_00021 - 338 2.5e-06 27.2 0.1 1 1 3.3e-09 8.4e-06 25.4 0.1 1 174 2 171 2 194 0.70 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 242 pCP023447_00021 - 338 3.5e-05 23.0 0.0 1 2 1.9e-07 0.00049 19.3 0.0 20 85 2 68 1 117 0.85 NAD synthase NAD_synthase PF02540.17 242 pCP023447_00021 - 338 3.5e-05 23.0 0.0 2 2 0.057 1.5e+02 1.4 0.0 148 181 152 185 145 212 0.82 NAD synthase Arginosuc_synth PF00764.19 388 pCP023447_00021 - 338 0.00027 20.3 0.0 1 1 1.6e-07 0.00042 19.7 0.0 2 112 5 116 4 125 0.80 Arginosuccinate synthase PAPS_reduct PF01507.19 174 pCP023447_00021 - 338 0.031 14.3 0.0 1 1 2e-05 0.052 13.6 0.0 2 150 3 169 2 174 0.81 Phosphoadenosine phosphosulfate reductase family Lysine_decarbox PF03641.14 132 pCP023447_00022 - 122 2.8e-25 88.9 0.0 1 1 3.3e-29 2.9e-25 88.9 0.0 16 126 4 113 1 119 0.89 Possible lysine decarboxylase LDcluster4 PF18306.1 157 pCP023447_00022 - 122 0.09 12.4 0.0 1 1 1.1e-05 0.098 12.2 0.0 67 116 11 59 2 105 0.70 SLOG cluster4 family LDcluster4 PF18306.1 157 pCP023447_00023 - 75 7.8e-06 25.6 0.1 1 1 1.6e-09 9.3e-06 25.3 0.1 4 54 22 72 19 74 0.85 SLOG cluster4 family DNA_processg_A PF02481.15 210 pCP023447_00023 - 75 0.00045 19.5 0.0 1 1 7.6e-08 0.00046 19.5 0.0 59 95 38 74 14 75 0.81 DNA recombination-mediator protein A SKI PF01202.22 158 pCP023447_00023 - 75 0.029 14.5 0.0 1 1 5.1e-06 0.031 14.4 0.0 43 83 31 72 17 75 0.85 Shikimate kinase Peptidase_C39 PF03412.15 133 pCP023447_00028 - 198 2e-16 60.0 0.0 1 1 5.7e-20 2.6e-16 59.7 0.0 3 131 34 174 32 176 0.84 Peptidase C39 family Peptidase_C70 PF12385.8 145 pCP023447_00028 - 198 0.00052 20.0 0.0 1 1 1.6e-07 0.00072 19.6 0.0 11 131 37 147 21 159 0.79 Papain-like cysteine protease AvrRpt2 AHJR-like PF18743.1 123 pCP023447_00028 - 198 0.068 12.7 0.0 1 1 3.6e-05 0.16 11.5 0.0 11 42 153 184 145 188 0.89 REase_AHJR-like DUF3335 PF11814.8 206 pCP023447_00028 - 198 0.1 12.1 0.0 1 2 0.0016 7.3 6.0 0.0 4 27 36 59 34 70 0.81 Peptidase_C39 like family DUF3335 PF11814.8 206 pCP023447_00028 - 198 0.1 12.1 0.0 2 2 0.0062 28 4.1 0.0 144 167 122 145 90 158 0.86 Peptidase_C39 like family FliMN_C PF01052.20 73 pCP023447_00029 - 280 4.6e-21 74.6 1.5 1 1 4e-25 7.2e-21 74.0 1.5 2 71 200 269 199 271 0.98 Type III flagellar switch regulator (C-ring) FliN C-term FliM PF02154.15 192 pCP023447_00030 - 359 4.8e-75 251.7 1.4 1 1 2.3e-78 6.9e-75 251.2 1.4 1 192 41 231 41 231 0.99 Flagellar motor switch protein FliM FliMN_C PF01052.20 73 pCP023447_00030 - 359 8e-14 51.4 0.3 1 1 4.5e-17 1.3e-13 50.7 0.3 3 72 255 324 253 325 0.96 Type III flagellar switch regulator (C-ring) FliN C-term DUF3567 PF12091.8 89 pCP023447_00030 - 359 0.029 14.5 1.3 1 2 0.42 1.3e+03 -0.4 0.1 67 86 6 25 2 27 0.82 Protein of unknown function (DUF3567) DUF3567 PF12091.8 89 pCP023447_00030 - 359 0.029 14.5 1.3 2 2 5e-05 0.15 12.2 0.2 41 80 301 340 291 348 0.91 Protein of unknown function (DUF3567) 7TM_GPCR_Sri PF10327.9 303 pCP023447_00030 - 359 0.045 12.9 0.1 1 1 2.3e-05 0.068 12.3 0.1 157 224 165 232 156 249 0.91 Serpentine type 7TM GPCR chemoreceptor Sri Pertactin PF03212.14 121 pCP023447_00030 - 359 0.085 12.8 0.0 1 2 0.015 46 4.0 0.0 16 50 100 140 87 151 0.72 Pertactin Pertactin PF03212.14 121 pCP023447_00030 - 359 0.085 12.8 0.0 2 2 0.0027 7.9 6.4 0.0 29 68 263 302 231 307 0.86 Pertactin Sld5 PF05916.11 109 pCP023447_00030 - 359 0.14 12.6 4.6 1 2 0.052 1.6e+02 2.8 0.7 40 84 20 89 1 93 0.62 GINS complex protein Sld5 PF05916.11 109 pCP023447_00030 - 359 0.14 12.6 4.6 2 2 0.0002 0.6 10.6 0.2 35 81 298 345 271 348 0.84 GINS complex protein Sigma70_r4 PF04545.16 50 pCP023447_00031 - 238 2.9e-18 65.1 2.8 1 1 8.7e-21 8.2e-18 63.7 2.8 1 50 186 235 186 235 0.98 Sigma-70, region 4 Sigma70_r2 PF04542.14 71 pCP023447_00031 - 238 1.7e-10 40.5 0.0 1 1 3e-13 2.9e-10 39.8 0.0 1 67 28 97 28 100 0.97 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 54 pCP023447_00031 - 238 1.6e-08 34.1 2.3 1 2 6.4 6e+03 -3.0 0.2 8 22 30 44 27 47 0.75 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 54 pCP023447_00031 - 238 1.6e-08 34.1 2.3 2 2 1.7e-11 1.6e-08 34.1 2.3 2 54 181 233 180 233 0.92 Sigma-70, region 4 Sigma70_r3 PF04539.16 78 pCP023447_00031 - 238 0.00075 19.6 5.5 1 3 3 2.9e+03 -1.5 0.1 29 51 9 31 8 33 0.78 Sigma-70 region 3 Sigma70_r3 PF04539.16 78 pCP023447_00031 - 238 0.00075 19.6 5.5 2 3 2e-06 0.0019 18.3 0.2 5 61 111 167 108 181 0.79 Sigma-70 region 3 Sigma70_r3 PF04539.16 78 pCP023447_00031 - 238 0.00075 19.6 5.5 3 3 0.16 1.5e+02 2.5 0.1 24 40 209 225 205 229 0.69 Sigma-70 region 3 HTH_23 PF13384.6 50 pCP023447_00031 - 238 0.0017 18.1 0.1 1 1 4e-06 0.0037 17.0 0.1 9 41 196 229 189 235 0.82 Homeodomain-like domain UPF0122 PF04297.14 101 pCP023447_00031 - 238 0.0018 18.5 4.1 1 2 3.4 3.2e+03 -1.6 0.0 55 84 85 112 84 126 0.62 Putative helix-turn-helix protein, YlxM / p13 like UPF0122 PF04297.14 101 pCP023447_00031 - 238 0.0018 18.5 4.1 2 2 1.9e-06 0.0018 18.5 4.1 18 61 190 233 171 237 0.76 Putative helix-turn-helix protein, YlxM / p13 like MarR_2 PF12802.7 62 pCP023447_00031 - 238 0.0027 17.5 0.0 1 1 6.1e-06 0.0058 16.5 0.0 10 47 196 231 183 232 0.83 MarR family HTH_37 PF13744.6 80 pCP023447_00031 - 238 0.016 15.1 0.5 1 1 4.6e-05 0.043 13.8 0.5 19 58 196 232 169 237 0.80 Helix-turn-helix domain Sds3 PF08598.11 218 pCP023447_00031 - 238 0.028 14.4 9.2 1 1 5.4e-05 0.051 13.6 9.2 26 98 163 238 159 238 0.90 Sds3-like HTH_5 PF01022.20 47 pCP023447_00031 - 238 0.036 13.9 0.2 1 1 9.8e-05 0.093 12.6 0.2 14 34 204 224 195 235 0.84 Bacterial regulatory protein, arsR family MarR PF01047.22 59 pCP023447_00031 - 238 0.04 13.9 2.5 1 2 2.2 2.1e+03 -1.2 0.1 37 51 170 184 169 188 0.79 MarR family MarR PF01047.22 59 pCP023447_00031 - 238 0.04 13.9 2.5 2 2 4.5e-05 0.042 13.8 0.4 9 44 197 232 195 232 0.94 MarR family GerE PF00196.19 57 pCP023447_00031 - 238 0.041 13.4 0.1 1 1 7.9e-05 0.075 12.6 0.1 15 46 203 234 188 236 0.82 Bacterial regulatory proteins, luxR family IF-2B PF01008.17 282 pCP023447_00031 - 238 0.095 11.9 4.0 1 1 0.0012 1.2 8.3 4.0 30 119 131 222 14 237 0.78 Initiation factor 2 subunit family TrmB PF01978.19 68 pCP023447_00031 - 238 0.11 12.4 1.3 1 1 0.00028 0.26 11.2 0.4 17 49 200 232 189 232 0.90 Sugar-specific transcriptional regulator TrmB Sigma70_ECF PF07638.11 185 pCP023447_00031 - 238 0.14 12.0 5.8 1 1 0.0021 2 8.3 5.8 71 169 75 223 13 237 0.59 ECF sigma factor HTH_WhiA PF02650.14 84 pCP023447_00031 - 238 0.15 12.4 8.4 1 2 3.7 3.5e+03 -1.6 0.1 20 36 106 122 101 153 0.61 WhiA C-terminal HTH domain HTH_WhiA PF02650.14 84 pCP023447_00031 - 238 0.15 12.4 8.4 2 2 4.9e-05 0.046 14.1 4.7 20 82 171 231 161 233 0.84 WhiA C-terminal HTH domain DAPDH_C PF16654.5 154 pCP023447_00031 - 238 0.15 11.9 1.7 1 2 1 9.7e+02 -0.5 0.1 89 109 104 125 96 135 0.78 Diaminopimelic acid dehydrogenase C-terminal domain DAPDH_C PF16654.5 154 pCP023447_00031 - 238 0.15 11.9 1.7 2 2 0.00035 0.33 10.8 0.3 41 126 142 229 136 232 0.78 Diaminopimelic acid dehydrogenase C-terminal domain Glyco_hydro_65m PF03632.15 387 pCP023447_00031 - 238 0.21 10.4 1.8 1 2 0.00039 0.37 9.6 0.0 250 301 78 128 50 138 0.78 Glycosyl hydrolase family 65 central catalytic domain Glyco_hydro_65m PF03632.15 387 pCP023447_00031 - 238 0.21 10.4 1.8 2 2 0.37 3.5e+02 -0.2 0.5 191 257 148 214 129 235 0.70 Glycosyl hydrolase family 65 central catalytic domain Clr5 PF14420.6 54 pCP023447_00031 - 238 2.5 8.4 5.8 1 3 7.5 7.1e+03 -2.7 0.0 20 32 106 118 103 127 0.68 Clr5 domain Clr5 PF14420.6 54 pCP023447_00031 - 238 2.5 8.4 5.8 2 3 0.58 5.5e+02 0.9 0.2 14 27 163 175 159 186 0.84 Clr5 domain Clr5 PF14420.6 54 pCP023447_00031 - 238 2.5 8.4 5.8 3 3 0.0015 1.4 9.2 0.5 6 31 191 216 187 228 0.87 Clr5 domain Hema_stalk PF08720.10 175 pCP023447_00032 - 118 0.002 17.8 0.1 1 1 4.4e-07 0.0026 17.5 0.1 8 69 38 98 29 112 0.88 Influenza C hemagglutinin stalk DUF5531 PF17671.1 152 pCP023447_00032 - 118 0.04 13.8 2.6 1 1 9.3e-06 0.056 13.3 2.1 101 136 81 116 76 118 0.91 Family of unknown function (DUF5531) Neur_chan_memb PF02932.16 238 pCP023447_00032 - 118 0.11 12.5 0.1 1 1 2.4e-05 0.14 12.2 0.1 63 121 42 100 25 117 0.79 Neurotransmitter-gated ion-channel transmembrane region ParA PF10609.9 246 pCP023447_00033 - 288 3.1e-26 92.3 1.4 1 1 1.3e-28 1.2e-25 90.4 1.4 3 245 23 260 21 261 0.84 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 177 pCP023447_00033 - 288 2e-19 70.2 0.5 1 1 3.9e-22 3.7e-19 69.3 0.5 2 171 24 186 23 194 0.85 AAA domain CbiA PF01656.23 128 pCP023447_00033 - 288 2.8e-18 66.2 0.0 1 1 6.3e-21 5.9e-18 65.1 0.0 1 124 26 238 26 242 0.91 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 271 pCP023447_00033 - 288 7.6e-12 45.2 1.2 1 2 2e-09 1.9e-06 27.5 0.0 6 70 30 94 24 97 0.92 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_NifH PF00142.18 271 pCP023447_00033 - 288 7.6e-12 45.2 1.2 2 2 4e-06 0.0038 16.7 0.2 106 264 123 280 118 286 0.79 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 262 pCP023447_00033 - 288 4.9e-07 29.3 0.0 1 1 9.3e-10 8.8e-07 28.5 0.0 1 126 24 159 24 199 0.72 ATPase MipZ CBP_BcsQ PF06564.12 234 pCP023447_00033 - 288 6e-07 29.2 0.0 1 1 9.1e-10 8.6e-07 28.7 0.0 3 151 25 168 23 206 0.80 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 305 pCP023447_00033 - 288 2.7e-06 26.8 3.4 1 2 6.8e-09 6.4e-06 25.6 0.3 5 38 28 61 23 119 0.84 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 pCP023447_00033 - 288 2.7e-06 26.8 3.4 2 2 0.14 1.3e+02 1.5 0.2 28 65 154 189 149 234 0.68 Anion-transporting ATPase MeaB PF03308.16 267 pCP023447_00033 - 288 3.6e-05 22.9 0.3 1 2 2e-06 0.0019 17.2 0.0 14 66 7 61 1 66 0.81 Methylmalonyl Co-A mutase-associated GTPase MeaB MeaB PF03308.16 267 pCP023447_00033 - 288 3.6e-05 22.9 0.3 2 2 0.024 22 3.9 0.1 123 153 134 165 124 199 0.87 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 188 pCP023447_00033 - 288 3.9e-05 23.5 0.2 1 1 1.3e-07 0.00012 21.9 0.2 1 35 31 65 31 69 0.91 mRNA cleavage and polyadenylation factor CLP1 P-loop VirC1 PF07015.11 231 pCP023447_00033 - 288 0.0003 20.1 0.1 1 1 7.4e-07 0.0007 19.0 0.1 3 39 25 61 23 65 0.95 VirC1 protein AAA_24 PF13479.6 197 pCP023447_00033 - 288 0.00049 19.9 0.2 1 2 1.2e-06 0.0011 18.7 0.1 9 73 31 140 26 159 0.93 AAA domain AAA_24 PF13479.6 197 pCP023447_00033 - 288 0.00049 19.9 0.2 2 2 2.7 2.5e+03 -2.0 0.0 161 161 187 187 146 249 0.60 AAA domain AAA_26 PF13500.6 198 pCP023447_00033 - 288 0.00067 19.5 0.7 1 2 0.00053 0.5 10.1 0.0 3 35 26 58 24 59 0.92 AAA domain AAA_26 PF13500.6 198 pCP023447_00033 - 288 0.00067 19.5 0.7 2 2 0.0026 2.4 7.9 0.1 130 192 157 230 112 235 0.71 AAA domain NB-ARC PF00931.22 252 pCP023447_00033 - 288 0.0024 17.1 0.4 1 2 0.00014 0.13 11.4 0.1 16 42 21 46 4 61 0.75 NB-ARC domain NB-ARC PF00931.22 252 pCP023447_00033 - 288 0.0024 17.1 0.4 2 2 0.028 27 3.8 0.0 151 221 173 240 162 266 0.69 NB-ARC domain NTPase_1 PF03266.15 168 pCP023447_00033 - 288 0.0048 16.8 0.2 1 2 2.8e-05 0.027 14.4 0.0 5 31 30 56 25 61 0.88 NTPase NTPase_1 PF03266.15 168 pCP023447_00033 - 288 0.0048 16.8 0.2 2 2 1.1 1e+03 -0.5 0.0 120 159 150 196 142 214 0.57 NTPase SRP54 PF00448.22 196 pCP023447_00033 - 288 0.0073 16.0 1.4 1 2 1.6e-05 0.015 14.9 0.1 5 39 28 62 24 65 0.90 SRP54-type protein, GTPase domain SRP54 PF00448.22 196 pCP023447_00033 - 288 0.0073 16.0 1.4 2 2 0.79 7.4e+02 -0.4 0.1 82 93 131 143 113 210 0.68 SRP54-type protein, GTPase domain Helicase_RecD PF05127.14 177 pCP023447_00033 - 288 0.06 13.2 0.8 1 2 0.033 31 4.4 0.0 69 118 114 159 27 165 0.55 Helicase Helicase_RecD PF05127.14 177 pCP023447_00033 - 288 0.06 13.2 0.8 2 2 0.0064 6.1 6.7 0.3 21 98 168 245 160 264 0.75 Helicase AAA_18 PF13238.6 130 pCP023447_00033 - 288 0.062 13.8 0.4 1 1 0.00019 0.18 12.4 0.4 4 25 30 80 26 169 0.63 AAA domain APS_kinase PF01583.20 158 pCP023447_00033 - 288 0.083 12.8 0.1 1 1 0.00015 0.14 12.0 0.1 6 39 28 61 23 75 0.88 Adenylylsulphate kinase AAA_30 PF13604.6 192 pCP023447_00033 - 288 0.12 12.0 0.1 1 1 0.00023 0.22 11.2 0.1 17 50 23 56 14 65 0.89 AAA domain SRP54 PF00448.22 196 pCP023447_00034 - 480 1.1e-42 145.9 0.1 1 1 3.5e-45 1.8e-42 145.2 0.1 2 195 279 470 278 471 0.91 SRP54-type protein, GTPase domain AAA_22 PF13401.6 137 pCP023447_00034 - 480 0.00053 20.3 0.0 1 1 2.9e-06 0.0015 18.8 0.0 3 28 276 301 272 333 0.88 AAA domain MMR_HSR1 PF01926.23 114 pCP023447_00034 - 480 0.00098 19.2 0.1 1 1 6.9e-06 0.0037 17.3 0.1 3 92 282 403 280 423 0.62 50S ribosome-binding GTPase ResIII PF04851.15 171 pCP023447_00034 - 480 0.0015 18.6 0.0 1 3 9.4 5e+03 -2.7 0.0 101 101 44 44 7 106 0.51 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP023447_00034 - 480 0.0015 18.6 0.0 2 3 0.71 3.8e+02 1.0 1.6 61 94 115 155 101 195 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP023447_00034 - 480 0.0015 18.6 0.0 3 3 2.8e-06 0.0015 18.6 0.0 21 49 261 303 228 317 0.75 Type III restriction enzyme, res subunit AAA_24 PF13479.6 197 pCP023447_00034 - 480 0.0015 18.3 0.8 1 2 5.8 3e+03 -2.3 0.0 123 123 162 162 118 209 0.57 AAA domain AAA_24 PF13479.6 197 pCP023447_00034 - 480 0.0015 18.3 0.8 2 2 8.4e-06 0.0044 16.8 0.2 3 76 279 367 277 380 0.68 AAA domain AAA_25 PF13481.6 194 pCP023447_00034 - 480 0.0021 17.7 0.1 1 2 1.5e-05 0.0079 15.8 0.0 28 61 273 306 267 316 0.87 AAA domain AAA_25 PF13481.6 194 pCP023447_00034 - 480 0.0021 17.7 0.1 2 2 4.1 2.2e+03 -2.0 0.0 132 151 346 365 326 368 0.81 AAA domain ABC_tran PF00005.27 137 pCP023447_00034 - 480 0.0022 18.5 0.0 1 1 4.2e-06 0.0022 18.5 0.0 4 46 271 318 269 414 0.85 ABC transporter cobW PF02492.19 177 pCP023447_00034 - 480 0.0028 17.3 1.4 1 1 6.6e-05 0.035 13.7 1.4 2 152 280 426 279 432 0.70 CobW/HypB/UreG, nucleotide-binding domain Rad17 PF03215.15 186 pCP023447_00034 - 480 0.0031 17.5 0.9 1 2 4.3e-05 0.023 14.6 0.0 43 71 276 304 254 319 0.82 Rad17 P-loop domain Rad17 PF03215.15 186 pCP023447_00034 - 480 0.0031 17.5 0.9 2 2 1.4 7.4e+02 -0.1 0.1 96 119 364 387 324 449 0.66 Rad17 P-loop domain AAA_7 PF12775.7 181 pCP023447_00034 - 480 0.0031 17.0 0.0 1 1 1.5e-05 0.0079 15.7 0.0 30 54 275 299 269 325 0.75 P-loop containing dynein motor region CbiA PF01656.23 128 pCP023447_00034 - 480 0.007 16.4 3.3 1 2 2.5 1.3e+03 -0.6 0.1 87 117 171 203 76 213 0.62 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 pCP023447_00034 - 480 0.007 16.4 3.3 2 2 0.00013 0.07 13.2 0.9 5 101 284 441 280 464 0.54 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.6 136 pCP023447_00034 - 480 0.0072 16.8 0.9 1 2 3.6 1.9e+03 -0.8 0.2 31 52 220 242 174 257 0.60 AAA domain AAA_17 PF13207.6 136 pCP023447_00034 - 480 0.0072 16.8 0.9 2 2 6.1e-05 0.032 14.6 0.0 1 115 284 404 284 409 0.68 AAA domain IstB_IS21 PF01695.17 178 pCP023447_00034 - 480 0.011 15.5 0.9 1 1 0.00025 0.13 11.9 0.3 42 126 273 374 236 411 0.64 IstB-like ATP binding protein T2SSE PF00437.20 273 pCP023447_00034 - 480 0.011 14.8 0.0 1 1 3.7e-05 0.02 14.0 0.0 123 148 272 297 233 315 0.82 Type II/IV secretion system protein AAA_5 PF07728.14 138 pCP023447_00034 - 480 0.011 15.7 0.3 1 1 0.00011 0.058 13.4 0.3 2 34 281 316 280 412 0.75 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 167 pCP023447_00034 - 480 0.012 15.5 0.7 1 2 7.3e-05 0.038 13.9 0.1 93 120 271 299 231 320 0.85 RsgA GTPase RsgA_GTPase PF03193.16 167 pCP023447_00034 - 480 0.012 15.5 0.7 2 2 7 3.7e+03 -2.3 0.0 12 26 385 399 355 423 0.57 RsgA GTPase AAA_16 PF13191.6 170 pCP023447_00034 - 480 0.021 15.2 0.0 1 1 0.00011 0.056 13.8 0.0 24 48 276 303 260 379 0.77 AAA ATPase domain NB-ARC PF00931.22 252 pCP023447_00034 - 480 0.021 14.0 0.0 1 1 9.9e-05 0.052 12.7 0.0 18 58 276 335 263 436 0.63 NB-ARC domain AAA_23 PF13476.6 200 pCP023447_00034 - 480 0.026 15.0 13.2 1 2 0.014 7.6 7.0 7.5 89 175 92 198 11 240 0.60 AAA domain AAA_23 PF13476.6 200 pCP023447_00034 - 480 0.026 15.0 13.2 2 2 0.00079 0.42 11.1 0.3 19 41 278 300 263 415 0.85 AAA domain ParA PF10609.9 246 pCP023447_00034 - 480 0.038 13.4 0.1 1 2 3 1.6e+03 -1.7 0.0 152 190 221 260 210 264 0.69 NUBPL iron-transfer P-loop NTPase ParA PF10609.9 246 pCP023447_00034 - 480 0.038 13.4 0.1 2 2 0.0003 0.16 11.4 0.0 3 43 277 319 275 355 0.85 NUBPL iron-transfer P-loop NTPase PhoH PF02562.16 205 pCP023447_00034 - 480 0.045 13.2 0.0 1 1 0.00018 0.097 12.1 0.0 15 60 274 320 269 368 0.74 PhoH-like protein Roc PF08477.13 120 pCP023447_00034 - 480 0.045 14.0 0.6 1 2 0.55 2.9e+02 1.7 0.1 17 46 126 155 121 166 0.78 Ras of Complex, Roc, domain of DAPkinase Roc PF08477.13 120 pCP023447_00034 - 480 0.045 14.0 0.6 2 2 0.002 1 9.6 0.0 2 27 281 306 279 341 0.66 Ras of Complex, Roc, domain of DAPkinase AAA_14 PF13173.6 131 pCP023447_00034 - 480 0.047 13.7 0.2 1 2 2.2 1.2e+03 -0.5 0.7 22 75 87 148 81 194 0.50 AAA domain AAA_14 PF13173.6 131 pCP023447_00034 - 480 0.047 13.7 0.2 2 2 9e-05 0.047 13.7 0.2 2 47 278 325 277 398 0.68 AAA domain VirE PF05272.11 198 pCP023447_00034 - 480 0.049 13.4 0.1 1 2 0.00042 0.22 11.2 0.0 46 79 272 306 231 320 0.78 Virulence-associated protein E VirE PF05272.11 198 pCP023447_00034 - 480 0.049 13.4 0.1 2 2 4.3 2.2e+03 -1.9 0.0 140 181 358 399 341 409 0.70 Virulence-associated protein E NACHT PF05729.12 166 pCP023447_00034 - 480 0.056 13.4 0.1 1 1 0.00024 0.13 12.2 0.1 2 28 280 306 279 313 0.87 NACHT domain AAA PF00004.29 132 pCP023447_00034 - 480 0.061 13.8 0.5 1 1 0.0003 0.16 12.4 0.5 1 22 281 302 281 384 0.70 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 192 pCP023447_00034 - 480 0.062 13.0 0.1 1 1 0.0002 0.11 12.2 0.1 17 39 277 299 271 318 0.81 AAA domain AAA_19 PF13245.6 146 pCP023447_00034 - 480 0.08 13.3 0.2 1 1 0.00043 0.23 11.8 0.2 9 68 277 337 271 402 0.66 AAA domain AAA_18 PF13238.6 130 pCP023447_00034 - 480 0.097 13.2 0.1 1 1 0.00072 0.38 11.3 0.1 2 84 282 367 281 395 0.60 AAA domain DEAD PF00270.29 176 pCP023447_00034 - 480 0.12 12.1 1.4 1 2 3.9 2.1e+03 -1.7 0.0 59 105 120 164 114 194 0.71 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP023447_00034 - 480 0.12 12.1 1.4 2 2 0.00053 0.28 10.9 0.3 11 106 275 366 267 428 0.76 DEAD/DEAH box helicase FtsK_SpoIIIE PF01580.18 243 pCP023447_00034 - 480 0.14 11.5 0.1 1 2 0.38 2e+02 1.2 0.0 130 161 177 208 173 233 0.74 FtsK/SpoIIIE family FtsK_SpoIIIE PF01580.18 243 pCP023447_00034 - 480 0.14 11.5 0.1 2 2 0.0033 1.7 7.9 0.0 30 65 270 304 241 358 0.75 FtsK/SpoIIIE family AAA_33 PF13671.6 143 pCP023447_00034 - 480 0.17 12.0 0.0 1 1 0.00077 0.41 10.8 0.0 2 20 281 299 280 365 0.85 AAA domain DUF3391 PF11871.8 136 pCP023447_00034 - 480 0.25 11.9 1.7 1 1 0.0011 0.55 10.8 1.7 41 100 39 98 26 192 0.83 Domain of unknown function (DUF3391) NTPase_1 PF03266.15 168 pCP023447_00034 - 480 0.52 10.2 3.4 1 2 0.0076 4 7.3 0.5 3 20 282 299 280 323 0.80 NTPase NTPase_1 PF03266.15 168 pCP023447_00034 - 480 0.52 10.2 3.4 2 2 0.15 78 3.1 0.1 89 127 351 388 333 433 0.69 NTPase HPPK PF01288.20 112 pCP023447_00035 - 157 2e-20 73.4 0.0 1 1 1.3e-24 2.3e-20 73.2 0.0 2 108 32 155 31 157 0.91 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DHquinase_II PF01220.19 138 pCP023447_00036 - 159 1e-57 193.7 0.3 1 1 2e-61 1.2e-57 193.4 0.3 1 135 2 136 2 139 0.98 Dehydroquinase class II Enoyl_reductase PF12241.8 236 pCP023447_00036 - 159 0.016 14.5 0.0 1 1 3.7e-06 0.022 14.1 0.0 6 65 20 81 16 114 0.78 Trans-2-enoyl-CoA reductase catalytic region PCuAC PF04314.13 109 pCP023447_00036 - 159 0.035 13.9 0.1 1 2 0.0064 38 4.1 0.2 50 70 21 41 2 47 0.77 Copper chaperone PCu(A)C PCuAC PF04314.13 109 pCP023447_00036 - 159 0.035 13.9 0.1 2 2 0.00042 2.5 7.9 0.0 40 86 93 139 71 153 0.76 Copper chaperone PCu(A)C Amidohydro_1 PF01979.20 344 pCP023447_00037 - 409 5.3e-61 206.8 0.0 1 1 6.9e-65 6.2e-61 206.6 0.0 1 343 56 406 56 407 0.94 Amidohydrolase family Amidohydro_3 PF07969.11 473 pCP023447_00037 - 409 1.3e-07 31.5 0.0 1 3 0.0011 10 5.5 0.1 7 21 54 68 53 81 0.83 Amidohydrolase family Amidohydro_3 PF07969.11 473 pCP023447_00037 - 409 1.3e-07 31.5 0.0 2 3 0.00036 3.2 7.1 0.0 154 216 97 169 85 203 0.79 Amidohydrolase family Amidohydro_3 PF07969.11 473 pCP023447_00037 - 409 1.3e-07 31.5 0.0 3 3 1.8e-06 0.016 14.7 0.0 411 447 344 379 291 391 0.69 Amidohydrolase family Peptidase_S49 PF01343.18 154 pCP023447_00038 - 298 6.8e-53 178.8 0.2 1 1 2.4e-56 8.7e-53 178.4 0.2 2 153 102 253 101 254 0.99 Peptidase family S49 CLP_protease PF00574.23 182 pCP023447_00038 - 298 5.5e-06 26.4 0.3 1 1 2e-08 7e-05 22.8 0.3 10 99 42 130 38 241 0.82 Clp protease SDH_sah PF01972.16 286 pCP023447_00038 - 298 0.00055 19.0 0.3 1 1 2.5e-07 0.0009 18.3 0.1 75 156 57 143 51 235 0.80 Serine dehydrogenase proteinase Ligase_CoA PF00549.19 153 pCP023447_00038 - 298 0.15 11.9 0.0 1 1 7.9e-05 0.28 11.0 0.0 56 122 58 120 40 139 0.85 CoA-ligase CsgA PF17334.2 83 pCP023447_00038 - 298 0.21 12.3 1.1 1 2 0.00086 3.1 8.6 0.0 28 76 164 212 155 214 0.87 Minor curli fiber component A CsgA PF17334.2 83 pCP023447_00038 - 298 0.21 12.3 1.1 2 2 0.18 6.3e+02 1.2 0.3 11 50 236 277 232 293 0.60 Minor curli fiber component A GSH-S_ATP PF02955.16 175 pCP023447_00039 - 343 0.056 12.8 0.0 1 2 0.11 1e+03 -1.0 0.0 31 52 140 161 121 170 0.80 Prokaryotic glutathione synthetase, ATP-grasp domain GSH-S_ATP PF02955.16 175 pCP023447_00039 - 343 0.056 12.8 0.0 2 2 2.6e-05 0.24 10.8 0.0 62 107 199 243 185 262 0.78 Prokaryotic glutathione synthetase, ATP-grasp domain DUF4821 PF16092.5 263 pCP023447_00039 - 343 0.084 12.5 0.0 1 1 1.5e-05 0.13 11.9 0.0 179 238 256 322 248 329 0.83 Domain of unknown function (DUF4821) Zn_ribbon_SprT PF17283.2 38 pCP023447_00040 - 116 0.0036 17.2 1.1 1 1 3.6e-07 0.0064 16.4 1.1 2 36 68 108 67 109 0.93 SprT-like zinc ribbon domain Hemerythrin PF01814.23 131 pCP023447_00041 - 98 4.9e-06 27.2 1.4 1 1 1.1e-09 6.3e-06 26.8 1.4 4 64 19 79 16 87 0.86 Hemerythrin HHE cation binding domain LANC_like PF05147.13 352 pCP023447_00041 - 98 0.022 13.3 0.1 1 1 4.7e-06 0.028 13.0 0.1 177 214 38 74 35 85 0.83 Lanthionine synthetase C-like protein RHH_7 PF16777.5 74 pCP023447_00041 - 98 0.046 14.1 0.1 1 1 1.4e-05 0.085 13.3 0.1 40 70 22 52 9 55 0.90 Transcriptional regulator, RHH-like, CopG LUD_dom PF02589.15 189 pCP023447_00042 - 218 1.3e-29 103.3 0.2 1 1 2.9e-33 1.7e-29 102.9 0.2 2 188 48 217 47 218 0.94 LUD domain AAA_5 PF07728.14 138 pCP023447_00042 - 218 0.068 13.2 0.1 1 1 3.1e-05 0.19 11.7 0.1 31 109 63 145 6 176 0.67 AAA domain (dynein-related subfamily) FtsX_ECD PF18075.1 96 pCP023447_00042 - 218 0.26 11.9 3.8 1 3 0.009 54 4.5 0.1 27 53 2 28 1 39 0.80 FtsX extracellular domain FtsX_ECD PF18075.1 96 pCP023447_00042 - 218 0.26 11.9 3.8 2 3 0.00035 2.1 9.0 0.5 22 69 30 72 24 79 0.80 FtsX extracellular domain FtsX_ECD PF18075.1 96 pCP023447_00042 - 218 0.26 11.9 3.8 3 3 2.3 1.4e+04 -3.2 0.0 52 63 169 180 160 187 0.49 FtsX extracellular domain LUD_dom PF02589.15 189 pCP023447_00043 - 479 7.8e-52 175.8 0.2 1 2 9.6 9.1e+03 -3.8 0.1 52 83 25 54 15 57 0.57 LUD domain LUD_dom PF02589.15 189 pCP023447_00043 - 479 7.8e-52 175.8 0.2 2 2 1.3e-54 1.3e-51 175.1 0.0 3 188 70 292 68 293 0.99 LUD domain DUF3390 PF11870.8 88 pCP023447_00043 - 479 9.3e-17 61.2 0.0 1 1 2.1e-19 1.9e-16 60.2 0.0 1 87 384 475 384 476 0.97 Domain of unknown function (DUF3390) Fer4_8 PF13183.6 65 pCP023447_00043 - 479 1.1e-11 44.9 1.5 1 1 3.3e-14 3.1e-11 43.6 1.5 2 65 309 376 308 376 0.80 4Fe-4S dicluster domain Fer4_17 PF13534.6 61 pCP023447_00043 - 479 4.6e-09 36.7 2.0 1 1 1.2e-11 1.1e-08 35.5 2.0 1 60 311 376 311 377 0.81 4Fe-4S dicluster domain Fer4_10 PF13237.6 56 pCP023447_00043 - 479 1e-08 35.1 8.1 1 2 4.7e-11 4.4e-08 33.1 7.6 4 56 307 373 304 373 0.96 4Fe-4S dicluster domain Fer4_10 PF13237.6 56 pCP023447_00043 - 479 1e-08 35.1 8.1 2 2 2.4e-05 0.022 14.9 2.1 7 24 360 382 354 408 0.74 4Fe-4S dicluster domain Fer4 PF00037.27 24 pCP023447_00043 - 479 1.8e-08 33.9 11.7 1 2 2.8e-07 0.00027 20.6 2.3 7 20 311 324 306 325 0.90 4Fe-4S binding domain Fer4 PF00037.27 24 pCP023447_00043 - 479 1.8e-08 33.9 11.7 2 2 2.2e-06 0.0021 17.8 2.2 7 21 361 375 358 377 0.88 4Fe-4S binding domain Fer4_7 PF12838.7 52 pCP023447_00043 - 479 5.7e-08 33.2 4.6 1 1 1.5e-10 1.4e-07 32.0 4.6 1 52 311 376 311 376 0.69 4Fe-4S dicluster domain Fer4_2 PF12797.7 22 pCP023447_00043 - 479 1e-06 28.5 11.3 1 2 3e-07 0.00029 20.8 1.8 4 21 306 323 302 324 0.89 4Fe-4S binding domain Fer4_2 PF12797.7 22 pCP023447_00043 - 479 1e-06 28.5 11.3 2 2 0.00016 0.15 12.2 2.3 8 21 360 373 357 374 0.89 4Fe-4S binding domain Fer4_9 PF13187.6 51 pCP023447_00043 - 479 4.8e-06 26.6 5.7 1 2 4.8e-05 0.045 13.9 1.8 34 48 310 324 291 328 0.71 4Fe-4S dicluster domain Fer4_9 PF13187.6 51 pCP023447_00043 - 479 4.8e-06 26.6 5.7 2 2 6.3e-08 6e-05 23.1 6.7 1 49 311 375 311 377 0.87 4Fe-4S dicluster domain Fer4_6 PF12837.7 24 pCP023447_00043 - 479 1.8e-05 24.6 11.2 1 2 5e-05 0.048 13.8 2.1 8 21 311 324 307 329 0.89 4Fe-4S binding domain Fer4_6 PF12837.7 24 pCP023447_00043 - 479 1.8e-05 24.6 11.2 2 2 1.9e-05 0.018 15.1 1.9 9 23 362 376 359 377 0.91 4Fe-4S binding domain Fer4_21 PF14697.6 59 pCP023447_00043 - 479 4.7e-05 23.4 4.6 1 2 5.4e-05 0.051 13.7 0.1 39 57 310 328 287 335 0.76 4Fe-4S dicluster domain Fer4_21 PF14697.6 59 pCP023447_00043 - 479 4.7e-05 23.4 4.6 2 2 0.00051 0.48 10.6 1.0 40 54 361 375 347 379 0.88 4Fe-4S dicluster domain Fer4_20 PF14691.6 113 pCP023447_00043 - 479 0.00016 21.4 2.9 1 2 6.3e-05 0.06 13.1 0.1 10 44 298 330 290 337 0.80 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_20 PF14691.6 113 pCP023447_00043 - 479 0.00016 21.4 2.9 2 2 0.0026 2.4 7.9 0.5 24 55 362 391 359 405 0.85 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.7 17 pCP023447_00043 - 479 0.00031 21.0 11.3 1 2 5.7e-07 0.00053 20.3 1.3 3 16 311 324 309 333 0.93 4Fe-4S binding domain Fer4_4 PF12800.7 17 pCP023447_00043 - 479 0.00031 21.0 11.3 2 2 0.05 47 4.8 3.0 4 17 362 375 359 375 0.91 4Fe-4S binding domain Fer4_16 PF13484.6 67 pCP023447_00043 - 479 0.0012 19.7 11.6 1 3 0.00075 0.71 10.9 2.4 1 14 311 324 271 325 0.71 4Fe-4S double cluster binding domain Fer4_16 PF13484.6 67 pCP023447_00043 - 479 0.0012 19.7 11.6 2 3 5.3e-05 0.05 14.5 11.9 1 66 311 374 311 375 0.85 4Fe-4S double cluster binding domain Fer4_16 PF13484.6 67 pCP023447_00043 - 479 0.0012 19.7 11.6 3 3 0.00069 0.65 11.0 3.2 1 16 361 376 361 393 0.87 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 96 pCP023447_00043 - 479 0.0022 18.8 5.7 1 2 0.0012 1.2 10.1 0.2 69 94 299 324 292 326 0.74 4Fe-4S dicluster domain Fer4_22 PF17179.4 96 pCP023447_00043 - 479 0.0022 18.8 5.7 2 2 0.0012 1.1 10.1 1.0 80 96 360 376 352 376 0.88 4Fe-4S dicluster domain Fer4_3 PF12798.7 15 pCP023447_00043 - 479 0.0029 18.4 16.2 1 2 0.00025 0.23 12.5 3.8 1 13 312 324 312 326 0.94 4Fe-4S binding domain Fer4_3 PF12798.7 15 pCP023447_00043 - 479 0.0029 18.4 16.2 2 2 0.00056 0.53 11.3 4.6 1 13 362 374 362 376 0.93 4Fe-4S binding domain Fer4_18 PF13746.6 114 pCP023447_00043 - 479 0.026 14.7 5.7 1 2 0.0021 2 8.6 0.1 56 74 307 325 289 334 0.76 4Fe-4S dicluster domain Fer4_18 PF13746.6 114 pCP023447_00043 - 479 0.026 14.7 5.7 2 2 0.0062 5.8 7.1 1.3 60 79 361 380 353 392 0.81 4Fe-4S dicluster domain Ribosomal_L5_C PF00673.21 94 pCP023447_00043 - 479 0.043 14.0 0.0 1 1 0.0001 0.096 12.9 0.0 12 72 27 83 12 113 0.79 ribosomal L5P family C-terminus Fer4_13 PF13370.6 58 pCP023447_00043 - 479 0.27 11.8 7.9 1 2 0.00044 0.42 11.2 0.7 5 17 311 323 308 340 0.85 4Fe-4S single cluster domain of Ferredoxin I Fer4_13 PF13370.6 58 pCP023447_00043 - 479 0.27 11.8 7.9 2 2 0.13 1.3e+02 3.3 1.4 6 17 362 373 359 374 0.93 4Fe-4S single cluster domain of Ferredoxin I CCG PF02754.16 85 pCP023447_00044 - 246 8.5e-31 106.0 0.4 1 2 1.1e-15 9.7e-12 44.9 0.0 1 84 5 85 5 86 0.94 Cysteine-rich domain CCG PF02754.16 85 pCP023447_00044 - 246 8.5e-31 106.0 0.4 2 2 3.1e-20 2.7e-16 59.5 0.1 1 85 133 218 133 218 0.97 Cysteine-rich domain HTH_11 PF08279.12 55 pCP023447_00044 - 246 0.029 14.3 0.1 1 2 0.0028 25 4.9 0.0 30 51 19 40 18 42 0.86 HTH domain HTH_11 PF08279.12 55 pCP023447_00044 - 246 0.029 14.3 0.1 2 2 0.00081 7.3 6.6 0.0 26 48 185 209 182 225 0.83 HTH domain Lactate_perm PF02652.14 522 pCP023447_00045 - 560 1.2e-205 684.2 48.6 1 1 8.1e-210 1.4e-205 683.9 48.6 1 521 19 545 19 546 0.98 L-lactate permease CDtoxinA PF03498.14 150 pCP023447_00046 - 189 1.1e-49 167.9 0.0 1 1 1.4e-53 1.2e-49 167.7 0.0 1 150 29 187 29 187 0.99 Cytolethal distending toxin A/C domain DUF2141 PF09912.9 112 pCP023447_00046 - 189 0.069 13.1 0.0 1 1 1e-05 0.092 12.7 0.0 39 79 85 125 30 131 0.84 Uncharacterized protein conserved in bacteria (DUF2141) Exo_endo_phos PF03372.23 233 pCP023447_00047 - 265 3.4e-18 66.0 0.2 1 1 5.4e-22 4.9e-18 65.5 0.2 1 233 24 257 24 257 0.78 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 119 pCP023447_00047 - 265 0.17 11.8 0.0 1 1 0.00047 4.2 7.2 0.0 27 118 174 260 149 261 0.56 Endonuclease-reverse transcriptase CDtoxinA PF03498.14 150 pCP023447_00048 - 268 1e-45 155.0 0.1 1 1 2.4e-49 1.4e-45 154.5 0.1 2 150 116 260 115 260 0.98 Cytolethal distending toxin A/C domain RicinB_lectin_2 PF14200.6 89 pCP023447_00048 - 268 1.4e-06 28.9 0.5 1 2 6.2e-10 3.7e-06 27.6 0.1 4 74 153 218 150 223 0.85 Ricin-type beta-trefoil lectin domain-like RicinB_lectin_2 PF14200.6 89 pCP023447_00048 - 268 1.4e-06 28.9 0.5 2 2 1.1 6.4e+03 -2.0 0.0 46 55 243 252 236 255 0.69 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.22 127 pCP023447_00048 - 268 1.6e-05 25.1 0.4 1 1 1.2e-08 6.9e-05 23.1 0.4 4 85 165 251 162 255 0.65 Ricin-type beta-trefoil lectin domain DUF4492 PF14899.6 63 pCP023447_00049 - 89 1.7e-25 88.7 8.4 1 2 0.41 7.3e+03 -3.0 0.2 32 40 4 12 2 18 0.65 Domain of unknown function (DUF4492) DUF4492 PF14899.6 63 pCP023447_00049 - 89 1.7e-25 88.7 8.4 2 2 9.4e-30 1.7e-25 88.7 8.4 2 63 24 85 23 85 0.98 Domain of unknown function (DUF4492) Cyt_bd_oxida_I PF01654.17 418 pCP023447_00050 - 520 1.6e-171 570.5 23.0 1 1 2.4e-175 2.1e-171 570.2 23.0 1 417 9 504 9 505 0.98 Cytochrome bd terminal oxidase subunit I Oxidored_q5_N PF01059.17 110 pCP023447_00050 - 520 1.9 8.6 15.0 1 4 0.001 9.3 6.4 0.8 19 67 52 99 29 108 0.79 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q5_N PF01059.17 110 pCP023447_00050 - 520 1.9 8.6 15.0 2 4 0.0012 11 6.2 0.1 52 75 113 136 99 139 0.81 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q5_N PF01059.17 110 pCP023447_00050 - 520 1.9 8.6 15.0 3 4 0.01 91 3.2 1.0 24 66 394 436 383 446 0.75 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q5_N PF01059.17 110 pCP023447_00050 - 520 1.9 8.6 15.0 4 4 0.34 3.1e+03 -1.7 0.1 70 80 478 488 464 507 0.61 NADH-ubiquinone oxidoreductase chain 4, amino terminus Cyt_bd_oxida_II PF02322.15 303 pCP023447_00051 - 374 4.4e-74 249.6 31.0 1 1 1.1e-77 5e-74 249.4 31.0 1 303 10 357 10 357 0.87 Cytochrome bd terminal oxidase subunit II TrbL PF04610.14 215 pCP023447_00051 - 374 0.002 17.9 11.8 1 4 2.9 1.3e+04 -4.4 4.0 95 119 55 79 17 104 0.57 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP023447_00051 - 374 0.002 17.9 11.8 2 4 0.12 5.5e+02 0.1 0.1 85 116 107 144 100 151 0.65 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP023447_00051 - 374 0.002 17.9 11.8 3 4 0.64 2.9e+03 -2.2 2.3 134 153 215 234 207 246 0.83 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP023447_00051 - 374 0.002 17.9 11.8 4 4 4.4e-07 0.002 17.9 11.8 118 206 247 341 236 354 0.79 TrbL/VirB6 plasmid conjugal transfer protein DUF334 PF03904.13 230 pCP023447_00051 - 374 0.055 13.0 0.9 1 1 3.7e-05 0.17 11.4 0.9 148 219 283 354 276 360 0.76 Domain of unknown function (DUF334) DUF5362 PF17319.2 94 pCP023447_00051 - 374 0.68 9.8 6.3 1 2 0.00037 1.6 8.6 0.0 28 82 87 141 80 150 0.93 Family of unknown function (DUF5362) DUF5362 PF17319.2 94 pCP023447_00051 - 374 0.68 9.8 6.3 2 2 0.69 3.1e+03 -1.9 5.0 46 46 278 278 254 356 0.49 Family of unknown function (DUF5362) Asp_Glu_race PF01177.22 224 pCP023447_00053 - 231 2e-56 191.4 2.4 1 1 6.4e-60 2.3e-56 191.2 2.4 1 220 7 220 7 224 0.97 Asp/Glu/Hydantoin racemase Pantoate_transf PF02548.15 259 pCP023447_00053 - 231 0.00035 20.0 0.4 1 2 9e-07 0.0032 16.9 0.1 145 205 46 107 35 145 0.80 Ketopantoate hydroxymethyltransferase Pantoate_transf PF02548.15 259 pCP023447_00053 - 231 0.00035 20.0 0.4 2 2 0.057 2e+02 1.2 0.0 156 184 170 198 162 205 0.84 Ketopantoate hydroxymethyltransferase PA PF02225.22 89 pCP023447_00053 - 231 0.022 14.7 0.0 1 2 0.0019 6.6 6.8 0.0 40 89 69 112 26 112 0.77 PA domain PA PF02225.22 89 pCP023447_00053 - 231 0.022 14.7 0.0 2 2 0.0033 12 6.0 0.0 39 54 181 206 141 227 0.79 PA domain AAA_33 PF13671.6 143 pCP023447_00053 - 231 0.083 13.1 0.1 1 1 3.9e-05 0.14 12.3 0.1 47 116 52 118 15 128 0.77 AAA domain HTH_CodY PF08222.11 61 pCP023447_00053 - 231 0.16 11.6 3.3 1 4 0.00026 0.94 9.1 0.2 31 61 4 34 1 34 0.89 CodY helix-turn-helix domain HTH_CodY PF08222.11 61 pCP023447_00053 - 231 0.16 11.6 3.3 2 4 3.4 1.2e+04 -4.1 0.0 26 32 69 75 64 76 0.79 CodY helix-turn-helix domain HTH_CodY PF08222.11 61 pCP023447_00053 - 231 0.16 11.6 3.3 3 4 0.061 2.2e+02 1.5 0.0 46 58 153 165 150 168 0.87 CodY helix-turn-helix domain HTH_CodY PF08222.11 61 pCP023447_00053 - 231 0.16 11.6 3.3 4 4 0.76 2.7e+03 -2.0 0.0 44 58 208 222 204 225 0.83 CodY helix-turn-helix domain UDG PF03167.19 155 pCP023447_00054 - 231 1.1e-20 74.2 0.1 1 1 8.5e-25 1.5e-20 73.7 0.1 6 151 64 217 59 221 0.87 Uracil DNA glycosylase superfamily Lyase_1 PF00206.20 312 pCP023447_00055 - 468 8.3e-102 340.8 0.0 1 1 1.7e-105 1e-101 340.5 0.0 2 312 12 342 11 342 0.98 Lyase FumaraseC_C PF10415.9 54 pCP023447_00055 - 468 4.3e-24 84.7 0.1 1 1 2.3e-27 1.3e-23 83.1 0.1 1 53 408 460 408 461 0.98 Fumarase C C-terminus SH3_17 PF18350.1 53 pCP023447_00055 - 468 0.088 12.7 0.0 1 1 4.7e-05 0.28 11.1 0.0 10 28 394 413 386 422 0.80 Restriction endonuclease SH3 domain DcuA_DcuB PF03605.14 368 pCP023447_00056 - 445 3.1e-134 447.5 28.5 1 1 6.5e-138 3.9e-134 447.2 28.5 1 367 8 370 8 371 0.96 Anaerobic c4-dicarboxylate membrane transporter CitMHS PF03600.16 300 pCP023447_00056 - 445 0.14 11.3 52.4 1 2 5.6e-06 0.034 13.4 30.7 22 236 35 251 3 318 0.59 Citrate transporter CitMHS PF03600.16 300 pCP023447_00056 - 445 0.14 11.3 52.4 2 2 0.013 80 2.3 14.7 67 168 330 439 307 445 0.75 Citrate transporter Tmemb_18A PF09771.9 118 pCP023447_00056 - 445 7 7.1 5.9 1 4 0.0018 11 6.5 0.0 17 66 41 90 37 124 0.69 Transmembrane protein 188 Tmemb_18A PF09771.9 118 pCP023447_00056 - 445 7 7.1 5.9 2 4 0.55 3.3e+03 -1.5 0.1 56 56 267 267 230 323 0.59 Transmembrane protein 188 Tmemb_18A PF09771.9 118 pCP023447_00056 - 445 7 7.1 5.9 3 4 0.27 1.6e+03 -0.5 0.1 37 80 302 368 293 389 0.50 Transmembrane protein 188 Tmemb_18A PF09771.9 118 pCP023447_00056 - 445 7 7.1 5.9 4 4 0.091 5.5e+02 1.0 0.1 50 81 407 438 378 444 0.74 Transmembrane protein 188 TPR_2 PF07719.17 34 pCP023447_00057 - 453 0.0002 21.2 7.6 1 4 0.54 2.4e+03 -0.9 0.0 6 24 63 81 62 87 0.81 Tetratricopeptide repeat TPR_2 PF07719.17 34 pCP023447_00057 - 453 0.0002 21.2 7.6 2 4 4.6e-05 0.21 11.8 0.3 4 29 128 153 126 155 0.91 Tetratricopeptide repeat TPR_2 PF07719.17 34 pCP023447_00057 - 453 0.0002 21.2 7.6 3 4 0.14 6.3e+02 0.9 0.3 18 31 156 169 154 172 0.82 Tetratricopeptide repeat TPR_2 PF07719.17 34 pCP023447_00057 - 453 0.0002 21.2 7.6 4 4 0.00027 1.2 9.4 0.1 11 34 223 246 213 246 0.86 Tetratricopeptide repeat HZS_alpha PF18582.1 99 pCP023447_00057 - 453 0.0024 18.3 0.0 1 2 0.52 2.3e+03 -0.9 0.0 33 72 99 138 74 146 0.73 Hydrazine synthase alpha subunit middle domain HZS_alpha PF18582.1 99 pCP023447_00057 - 453 0.0024 18.3 0.0 2 2 3.5e-06 0.016 15.7 0.0 42 90 399 447 355 450 0.79 Hydrazine synthase alpha subunit middle domain TPR_6 PF13174.6 33 pCP023447_00057 - 453 0.33 11.7 2.6 1 3 0.16 7e+02 1.2 0.0 7 26 132 151 130 154 0.85 Tetratricopeptide repeat TPR_6 PF13174.6 33 pCP023447_00057 - 453 0.33 11.7 2.6 2 3 0.39 1.8e+03 -0.0 0.1 13 25 153 164 148 168 0.82 Tetratricopeptide repeat TPR_6 PF13174.6 33 pCP023447_00057 - 453 0.33 11.7 2.6 3 3 0.0012 5.5 7.8 0.1 6 32 218 245 214 246 0.77 Tetratricopeptide repeat TPR_8 PF13181.6 34 pCP023447_00057 - 453 1.5 9.2 4.2 1 4 0.39 1.7e+03 -0.3 0.0 6 20 63 77 62 86 0.85 Tetratricopeptide repeat TPR_8 PF13181.6 34 pCP023447_00057 - 453 1.5 9.2 4.2 2 4 0.0017 7.7 7.0 0.1 8 29 132 153 131 157 0.88 Tetratricopeptide repeat TPR_8 PF13181.6 34 pCP023447_00057 - 453 1.5 9.2 4.2 3 4 0.19 8.5e+02 0.6 0.3 16 26 154 164 152 172 0.87 Tetratricopeptide repeat TPR_8 PF13181.6 34 pCP023447_00057 - 453 1.5 9.2 4.2 4 4 2 9.1e+03 -2.6 0.0 23 30 228 235 226 245 0.60 Tetratricopeptide repeat DUF1425 PF07233.12 92 pCP023447_00058 - 131 7.2e-08 32.2 0.0 1 1 4.9e-12 8.8e-08 31.9 0.0 20 91 48 118 29 119 0.84 Protein of unknown function (DUF1425) LpoB PF13036.6 147 pCP023447_00059 - 207 6.4e-45 152.7 0.1 1 1 8.9e-49 8e-45 152.4 0.1 1 147 47 196 47 196 0.97 Peptidoglycan-synthase activator LpoB DUF3799 PF12684.7 234 pCP023447_00059 - 207 0.12 12.1 0.0 1 2 5.2e-05 0.46 10.2 0.0 71 112 46 89 14 102 0.79 PDDEXK-like domain of unknown function (DUF3799) DUF3799 PF12684.7 234 pCP023447_00059 - 207 0.12 12.1 0.0 2 2 0.081 7.3e+02 -0.3 0.0 29 81 112 160 92 170 0.67 PDDEXK-like domain of unknown function (DUF3799) CTP_synth_N PF06418.14 265 pCP023447_00060 - 445 0.0094 15.3 1.9 1 2 0.0022 20 4.4 0.1 76 125 187 236 184 251 0.86 CTP synthase N-terminus CTP_synth_N PF06418.14 265 pCP023447_00060 - 445 0.0094 15.3 1.9 2 2 4.4e-05 0.4 10.0 0.3 76 128 319 373 300 383 0.86 CTP synthase N-terminus Rotamase_2 PF13145.6 121 pCP023447_00060 - 445 0.13 13.1 0.4 1 3 0.35 3.1e+03 -1.0 0.2 3 19 47 63 45 113 0.54 PPIC-type PPIASE domain Rotamase_2 PF13145.6 121 pCP023447_00060 - 445 0.13 13.1 0.4 2 3 1.4e-05 0.13 13.1 0.4 20 97 129 206 119 241 0.86 PPIC-type PPIASE domain Rotamase_2 PF13145.6 121 pCP023447_00060 - 445 0.13 13.1 0.4 3 3 0.28 2.5e+03 -0.7 0.2 42 88 327 375 289 388 0.58 PPIC-type PPIASE domain CsgG PF03783.14 210 pCP023447_00061 - 400 1.9e-06 27.3 3.0 1 2 0.2 9e+02 -1.0 0.0 183 201 40 59 16 68 0.62 Curli production assembly/transport component CsgG CsgG PF03783.14 210 pCP023447_00061 - 400 1.9e-06 27.3 3.0 2 2 4.9e-10 2.2e-06 27.1 1.0 30 165 146 274 102 298 0.81 Curli production assembly/transport component CsgG LPP20 PF02169.16 97 pCP023447_00061 - 400 0.0011 19.3 6.6 1 2 2.4e-07 0.0011 19.3 6.6 9 95 24 115 19 116 0.90 LPP20 lipoprotein LPP20 PF02169.16 97 pCP023447_00061 - 400 0.0011 19.3 6.6 2 2 0.12 5.6e+02 1.0 0.2 26 67 269 306 252 315 0.69 LPP20 lipoprotein AAA_assoc_2 PF16193.5 81 pCP023447_00061 - 400 0.0058 16.9 0.2 1 2 5.9e-05 0.26 11.6 0.1 21 79 132 190 124 190 0.86 AAA C-terminal domain AAA_assoc_2 PF16193.5 81 pCP023447_00061 - 400 0.0058 16.9 0.2 2 2 0.047 2.1e+02 2.3 0.0 4 40 267 303 264 337 0.77 AAA C-terminal domain CarbopepD_reg_2 PF13715.6 88 pCP023447_00061 - 400 1.4 8.9 6.8 1 4 0.25 1.1e+03 -0.3 0.1 16 35 56 76 49 84 0.79 CarboxypepD_reg-like domain CarbopepD_reg_2 PF13715.6 88 pCP023447_00061 - 400 1.4 8.9 6.8 2 4 0.98 4.4e+03 -2.2 0.1 31 38 105 112 96 125 0.61 CarboxypepD_reg-like domain CarbopepD_reg_2 PF13715.6 88 pCP023447_00061 - 400 1.4 8.9 6.8 3 4 0.00017 0.78 9.8 0.1 36 74 199 237 193 246 0.91 CarboxypepD_reg-like domain CarbopepD_reg_2 PF13715.6 88 pCP023447_00061 - 400 1.4 8.9 6.8 4 4 0.26 1.1e+03 -0.4 0.0 60 86 249 273 238 275 0.72 CarboxypepD_reg-like domain Ribosomal_L21p PF00829.21 101 pCP023447_00062 - 102 1.1e-31 109.0 5.4 1 1 1.4e-35 1.2e-31 108.9 5.4 1 101 1 100 1 100 0.97 Ribosomal prokaryotic L21 protein DUF5599 PF18141.1 93 pCP023447_00062 - 102 0.028 14.6 0.1 1 1 4.7e-06 0.043 14.1 0.1 25 64 5 44 1 72 0.84 Domain of unknown function (DUF5599) Ribosomal_L27 PF01016.19 79 pCP023447_00063 - 84 3.7e-38 129.4 5.0 1 1 2.3e-42 4.1e-38 129.3 5.0 1 79 2 81 2 81 0.98 Ribosomal L27 protein GTP1_OBG PF01018.22 155 pCP023447_00064 - 345 1.1e-54 184.2 7.9 1 1 3.3e-58 1.5e-54 183.8 7.9 1 155 3 157 3 157 0.99 GTP1/OBG MMR_HSR1 PF01926.23 114 pCP023447_00064 - 345 1.3e-21 76.8 0.0 1 1 4.6e-25 2.1e-21 76.2 0.0 1 101 160 267 160 316 0.88 50S ribosome-binding GTPase FeoB_N PF02421.18 156 pCP023447_00064 - 345 2.5e-09 36.9 0.0 1 2 1.1e-12 5.1e-09 35.8 0.0 3 57 161 216 159 262 0.90 Ferrous iron transport protein B FeoB_N PF02421.18 156 pCP023447_00064 - 345 2.5e-09 36.9 0.0 2 2 1 4.5e+03 -3.0 0.0 137 152 315 330 287 332 0.56 Ferrous iron transport protein B MeaB PF03308.16 267 pCP023447_00064 - 345 0.049 12.6 0.0 1 2 6.6e-05 0.3 10.0 0.0 32 49 161 178 156 184 0.89 Methylmalonyl Co-A mutase-associated GTPase MeaB MeaB PF03308.16 267 pCP023447_00064 - 345 0.049 12.6 0.0 2 2 0.1 4.5e+02 -0.4 0.0 200 232 309 341 275 344 0.59 Methylmalonyl Co-A mutase-associated GTPase MeaB AA_kinase PF00696.28 241 pCP023447_00065 - 251 5.3e-37 127.7 0.6 1 1 3.4e-41 6.1e-37 127.5 0.6 1 239 2 226 2 228 0.93 Amino acid kinase family Formyl_trans_N PF00551.19 181 pCP023447_00066 - 305 3e-35 121.6 0.0 1 1 5.2e-39 4.7e-35 121.0 0.0 1 164 2 165 2 181 0.94 Formyl transferase Formyl_trans_C PF02911.18 100 pCP023447_00066 - 305 5.1e-20 71.6 0.0 1 1 1e-23 9.1e-20 70.8 0.0 1 99 202 296 202 297 0.97 Formyl transferase, C-terminal domain BPL_LplA_LipB PF03099.19 131 pCP023447_00067 - 217 3.8e-13 49.5 0.0 1 1 5.7e-17 5.1e-13 49.1 0.0 3 117 13 123 11 136 0.86 Biotin/lipoate A/B protein ligase family Ubiquitin_4 PF18036.1 89 pCP023447_00067 - 217 0.034 14.2 0.0 1 1 8e-06 0.072 13.1 0.0 18 64 138 182 131 191 0.87 Ubiquitin-like domain AAA_31 PF13614.6 177 pCP023447_00068 - 261 1.3e-65 220.7 3.2 1 2 1.2e-68 1.3e-65 220.7 3.2 2 177 3 180 2 180 0.97 AAA domain AAA_31 PF13614.6 177 pCP023447_00068 - 261 1.3e-65 220.7 3.2 2 2 3.8 4e+03 -2.4 0.0 52 74 203 213 187 232 0.38 AAA domain CbiA PF01656.23 128 pCP023447_00068 - 261 3.7e-26 91.7 0.2 1 1 4.9e-29 5.2e-26 91.2 0.2 1 128 5 239 5 239 0.96 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 262 pCP023447_00068 - 261 2.2e-14 53.4 0.9 1 1 3.4e-16 3.6e-13 49.4 0.5 2 153 4 173 3 182 0.72 ATPase MipZ ParA PF10609.9 246 pCP023447_00068 - 261 1.6e-12 47.5 0.2 1 2 1.9e-11 2e-08 34.0 0.0 3 41 2 40 1 62 0.93 NUBPL iron-transfer P-loop NTPase ParA PF10609.9 246 pCP023447_00068 - 261 1.6e-12 47.5 0.2 2 2 0.00011 0.12 11.8 0.1 101 244 111 258 88 260 0.69 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 234 pCP023447_00068 - 261 2e-10 40.6 0.0 1 1 3.2e-13 3.4e-10 39.8 0.0 3 146 4 151 1 161 0.88 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 271 pCP023447_00068 - 261 3.8e-09 36.4 0.5 1 2 2.7e-10 2.8e-07 30.2 0.0 7 44 10 47 4 77 0.86 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_NifH PF00142.18 271 pCP023447_00068 - 261 3.8e-09 36.4 0.5 2 2 0.016 17 4.7 0.1 112 244 117 259 101 261 0.65 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 305 pCP023447_00068 - 261 3.8e-08 32.9 0.3 1 2 1.2e-09 1.2e-06 27.9 0.0 8 42 10 44 3 59 0.90 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 pCP023447_00068 - 261 3.8e-08 32.9 0.3 2 2 0.041 44 3.1 0.1 122 137 118 133 90 246 0.82 Anion-transporting ATPase VirC1 PF07015.11 231 pCP023447_00068 - 261 6.2e-05 22.4 0.2 1 1 1.7e-07 0.00018 20.9 0.1 2 41 3 42 2 128 0.86 VirC1 protein SRP54 PF00448.22 196 pCP023447_00068 - 261 0.0032 17.1 1.2 1 2 1.7e-05 0.018 14.7 0.2 11 40 13 42 4 81 0.85 SRP54-type protein, GTPase domain SRP54 PF00448.22 196 pCP023447_00068 - 261 0.0032 17.1 1.2 2 2 0.23 2.4e+02 1.2 0.1 62 91 100 128 72 131 0.73 SRP54-type protein, GTPase domain DUF1027 PF06265.11 85 pCP023447_00068 - 261 0.028 14.4 0.1 1 2 0.0026 2.7 8.0 0.0 18 39 106 127 94 145 0.84 Protein of unknown function (DUF1027) DUF1027 PF06265.11 85 pCP023447_00068 - 261 0.028 14.4 0.1 2 2 0.049 52 3.9 0.0 42 59 175 192 168 213 0.67 Protein of unknown function (DUF1027) DUF1906 PF08924.11 198 pCP023447_00068 - 261 0.051 13.7 0.0 1 2 0.12 1.2e+02 2.7 0.0 63 100 10 45 5 49 0.86 Domain of unknown function (DUF1906) DUF1906 PF08924.11 198 pCP023447_00068 - 261 0.051 13.7 0.0 2 2 0.0014 1.5 9.0 0.0 94 150 152 214 138 232 0.73 Domain of unknown function (DUF1906) AAA_24 PF13479.6 197 pCP023447_00068 - 261 0.063 13.0 0.1 1 1 0.00012 0.13 12.0 0.1 11 82 12 137 10 154 0.75 AAA domain CLP1_P PF16575.5 188 pCP023447_00068 - 261 0.069 12.9 0.1 1 2 0.00016 0.17 11.6 0.0 4 35 13 44 11 50 0.91 mRNA cleavage and polyadenylation factor CLP1 P-loop CLP1_P PF16575.5 188 pCP023447_00068 - 261 0.069 12.9 0.1 2 2 5.4 5.7e+03 -3.1 0.0 77 99 192 214 186 223 0.59 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 194 pCP023447_00068 - 261 0.088 12.4 0.1 1 2 0.00037 0.39 10.2 0.0 41 59 11 30 4 55 0.80 AAA domain AAA_25 PF13481.6 194 pCP023447_00068 - 261 0.088 12.4 0.1 2 2 0.75 7.9e+02 -0.5 0.0 131 150 112 128 85 150 0.73 AAA domain MeaB PF03308.16 267 pCP023447_00068 - 261 0.088 11.8 0.1 1 1 0.00013 0.14 11.1 0.1 39 74 13 48 4 51 0.93 Methylmalonyl Co-A mutase-associated GTPase MeaB SecA_DEAD PF07517.14 290 pCP023447_00068 - 261 0.25 10.6 1.7 1 2 0.0046 4.8 6.4 0.2 94 126 7 39 4 41 0.92 SecA DEAD-like domain SecA_DEAD PF07517.14 290 pCP023447_00068 - 261 0.25 10.6 1.7 2 2 0.045 48 3.1 0.1 190 213 105 128 96 148 0.80 SecA DEAD-like domain ResIII PF04851.15 171 pCP023447_00068 - 261 0.54 10.2 3.1 1 2 0.0011 1.2 9.2 0.8 33 139 12 127 5 129 0.56 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP023447_00068 - 261 0.54 10.2 3.1 2 2 0.63 6.7e+02 0.2 0.1 57 94 160 203 150 230 0.58 Type III restriction enzyme, res subunit ParBc PF02195.18 90 pCP023447_00069 - 278 5.4e-26 90.7 0.6 1 2 1.4e-28 3.6e-25 88.1 0.1 1 90 32 121 32 121 0.99 ParB-like nuclease domain ParBc PF02195.18 90 pCP023447_00069 - 278 5.4e-26 90.7 0.6 2 2 0.5 1.3e+03 -0.2 0.0 5 31 219 245 215 251 0.76 ParB-like nuclease domain HTH_ParB PF17762.1 52 pCP023447_00069 - 278 1.1e-14 54.0 0.6 1 3 0.21 5.3e+02 0.5 0.0 28 42 112 127 103 128 0.78 HTH domain found in ParB protein HTH_ParB PF17762.1 52 pCP023447_00069 - 278 1.1e-14 54.0 0.6 2 3 4.2 1.1e+04 -3.7 0.1 34 41 142 149 138 153 0.62 HTH domain found in ParB protein HTH_ParB PF17762.1 52 pCP023447_00069 - 278 1.1e-14 54.0 0.6 3 3 4.3e-18 1.1e-14 54.0 0.6 3 52 173 221 172 221 0.96 HTH domain found in ParB protein Raf1_N PF18578.1 106 pCP023447_00069 - 278 0.13 12.8 0.4 1 3 0.028 73 3.9 0.0 29 50 47 68 41 79 0.87 Rubisco accumulation factor 1 alpha helical domain Raf1_N PF18578.1 106 pCP023447_00069 - 278 0.13 12.8 0.4 2 3 1.8 4.7e+03 -1.9 0.0 39 53 130 144 107 155 0.66 Rubisco accumulation factor 1 alpha helical domain Raf1_N PF18578.1 106 pCP023447_00069 - 278 0.13 12.8 0.4 3 3 0.0089 23 5.5 0.0 15 54 193 232 185 241 0.85 Rubisco accumulation factor 1 alpha helical domain Popeye PF04831.13 140 pCP023447_00069 - 278 0.13 12.4 0.1 1 1 6.6e-05 0.17 12.1 0.1 70 115 116 212 109 273 0.76 Popeye protein conserved region HTH_19 PF12844.7 65 pCP023447_00069 - 278 0.14 12.2 5.4 1 4 0.25 6.4e+02 0.5 0.0 20 40 22 41 17 61 0.84 Helix-turn-helix domain HTH_19 PF12844.7 65 pCP023447_00069 - 278 0.14 12.2 5.4 2 4 0.25 6.4e+02 0.5 0.1 19 41 102 127 87 141 0.55 Helix-turn-helix domain HTH_19 PF12844.7 65 pCP023447_00069 - 278 0.14 12.2 5.4 3 4 0.0053 14 5.8 0.1 12 31 143 162 142 163 0.94 Helix-turn-helix domain HTH_19 PF12844.7 65 pCP023447_00069 - 278 0.14 12.2 5.4 4 4 0.023 60 3.8 0.1 29 55 219 250 208 257 0.83 Helix-turn-helix domain LAGLIDADG_WhiA PF14527.6 93 pCP023447_00069 - 278 0.25 11.4 4.6 1 3 0.046 1.2e+02 2.9 0.0 30 65 51 86 49 108 0.79 WhiA LAGLIDADG-like domain LAGLIDADG_WhiA PF14527.6 93 pCP023447_00069 - 278 0.25 11.4 4.6 2 3 0.73 1.9e+03 -1.0 0.1 62 74 155 167 129 221 0.66 WhiA LAGLIDADG-like domain LAGLIDADG_WhiA PF14527.6 93 pCP023447_00069 - 278 0.25 11.4 4.6 3 3 0.0005 1.3 9.2 0.3 31 74 234 275 227 277 0.85 WhiA LAGLIDADG-like domain DUF365 PF04033.12 96 pCP023447_00069 - 278 0.81 10.0 3.5 1 2 0.88 2.3e+03 -1.0 0.0 20 51 118 153 100 168 0.63 Domain of unknown function (DUF365) DUF365 PF04033.12 96 pCP023447_00069 - 278 0.81 10.0 3.5 2 2 0.00048 1.2 9.4 1.8 28 83 214 273 194 278 0.77 Domain of unknown function (DUF365) ATP-synt_B PF00430.18 132 pCP023447_00070 - 141 2.3e-10 40.7 10.5 1 1 2.2e-13 3.1e-10 40.3 10.5 3 115 11 123 9 137 0.95 ATP synthase B/B' CF(0) PMT2_N PF17987.1 125 pCP023447_00070 - 141 0.034 14.3 0.7 1 1 3.3e-05 0.046 13.9 0.7 16 80 50 112 35 133 0.78 Phosphoethanolamine N-methyltransferase 2 N-terminal DUF948 PF06103.11 89 pCP023447_00070 - 141 0.041 14.1 1.5 1 2 6.9e-05 0.095 13.0 0.8 5 73 13 81 9 108 0.86 Bacterial protein of unknown function (DUF948) DUF948 PF06103.11 89 pCP023447_00070 - 141 0.041 14.1 1.5 2 2 1.8 2.5e+03 -1.2 0.0 32 55 113 136 90 139 0.67 Bacterial protein of unknown function (DUF948) PAGK PF15284.6 64 pCP023447_00070 - 141 0.053 13.4 0.0 1 1 7.5e-05 0.1 12.5 0.0 6 26 15 35 10 53 0.79 Phage-encoded virulence factor DUF5119 PF17145.4 196 pCP023447_00070 - 141 0.067 13.1 0.1 1 1 5.8e-05 0.08 12.9 0.1 51 105 40 96 34 122 0.78 Domain of unknown function (DUF5119) Spc7 PF08317.11 310 pCP023447_00070 - 141 0.11 11.4 14.5 1 1 9e-05 0.12 11.2 14.5 137 251 29 139 25 141 0.80 Spc7 kinetochore protein CSG2 PF16965.5 397 pCP023447_00070 - 141 0.17 10.8 1.1 1 1 0.00014 0.19 10.6 1.1 47 136 9 97 3 126 0.63 Ceramide synthase regulator HTH_37 PF13744.6 80 pCP023447_00070 - 141 0.19 11.7 6.6 1 2 0.077 1.1e+02 2.9 0.3 4 51 41 86 39 92 0.78 Helix-turn-helix domain HTH_37 PF13744.6 80 pCP023447_00070 - 141 0.19 11.7 6.6 2 2 0.0002 0.27 11.2 2.6 7 58 89 140 85 141 0.89 Helix-turn-helix domain Flg_hook PF02120.16 85 pCP023447_00070 - 141 0.42 10.5 5.1 1 2 0.004 5.5 6.9 0.8 40 66 81 107 63 116 0.86 Flagellar hook-length control protein FliK Flg_hook PF02120.16 85 pCP023447_00070 - 141 0.42 10.5 5.1 2 2 0.0082 11 5.9 0.4 42 66 112 136 107 140 0.75 Flagellar hook-length control protein FliK ERG2_Sigma1R PF04622.12 209 pCP023447_00070 - 141 0.44 9.8 1.7 1 1 0.00042 0.58 9.5 1.2 14 63 60 109 54 126 0.79 ERG2 and Sigma1 receptor like protein CemA PF03040.14 229 pCP023447_00070 - 141 1.2 9.1 6.4 1 1 0.001 1.4 8.8 6.4 12 115 10 113 5 138 0.82 CemA family Macoilin PF09726.9 671 pCP023447_00070 - 141 1.3 7.5 11.1 1 1 0.0011 1.5 7.3 11.1 465 559 40 133 25 140 0.81 Macoilin family GrpE PF01025.19 166 pCP023447_00070 - 141 6.9 6.3 14.4 1 2 0.0011 1.5 8.4 2.6 17 62 39 84 30 88 0.89 GrpE GrpE PF01025.19 166 pCP023447_00070 - 141 6.9 6.3 14.4 2 2 0.051 70 3.0 5.7 9 63 86 140 84 141 0.87 GrpE ATP-synt_B PF00430.18 132 pCP023447_00071 - 62 0.008 16.3 0.2 1 2 0.69 1.2e+04 -3.8 0.4 10 18 5 13 3 17 0.44 ATP synthase B/B' CF(0) ATP-synt_B PF00430.18 132 pCP023447_00071 - 62 0.008 16.3 0.2 2 2 4.4e-07 0.008 16.3 0.2 5 31 30 56 27 59 0.91 ATP synthase B/B' CF(0) V-ATPase_G_2 PF16999.5 104 pCP023447_00072 - 89 0.00022 21.6 2.8 1 1 6.1e-08 0.00022 21.6 2.8 19 75 2 62 1 88 0.85 Vacuolar (H+)-ATPase G subunit Plasmid_parti PF01672.16 85 pCP023447_00072 - 89 0.0019 18.8 0.8 1 1 7.6e-07 0.0027 18.3 0.8 38 82 26 70 4 72 0.90 Putative plasmid partition protein ATP-synt_B PF00430.18 132 pCP023447_00072 - 89 0.0036 17.4 3.6 1 1 1.2e-06 0.0042 17.2 3.6 58 102 2 46 1 64 0.88 ATP synthase B/B' CF(0) DUF4954 PF16314.5 655 pCP023447_00072 - 89 0.011 14.0 1.3 1 1 3e-06 0.011 13.9 1.3 508 579 13 85 2 89 0.90 Domain of unknown function (DUF4954) Tweety PF04906.13 406 pCP023447_00072 - 89 0.64 8.6 2.7 1 1 0.0002 0.7 8.5 2.7 93 172 3 81 1 88 0.77 Tweety OSCP PF00213.18 172 pCP023447_00073 - 173 3.3e-22 79.4 3.0 1 1 2.5e-26 4.5e-22 79.0 3.0 1 142 5 139 5 154 0.95 ATP synthase delta (OSCP) subunit ATP-synt_ab PF00006.25 213 pCP023447_00074 - 501 1.4e-76 256.9 0.1 1 1 8.2e-80 2.1e-76 256.3 0.1 1 213 149 364 149 364 0.98 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.27 126 pCP023447_00074 - 501 6.3e-51 172.0 0.6 1 1 4.1e-54 1e-50 171.2 0.6 1 126 371 496 371 496 1.00 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.23 69 pCP023447_00074 - 501 3e-17 62.9 1.7 1 1 3.6e-20 9.3e-17 61.3 1.7 3 68 26 91 24 92 0.97 ATP synthase alpha/beta family, beta-barrel domain ATPase PF06745.13 231 pCP023447_00074 - 501 2.2e-05 23.9 1.4 1 2 5.3e-08 0.00013 21.4 0.3 2 70 147 212 146 220 0.90 KaiC ATPase PF06745.13 231 pCP023447_00074 - 501 2.2e-05 23.9 1.4 2 2 0.16 4.1e+02 0.1 0.0 85 122 463 500 453 501 0.73 KaiC Arginosuc_synth PF00764.19 388 pCP023447_00074 - 501 0.046 13.0 0.2 1 1 3.2e-05 0.082 12.2 0.2 10 57 176 223 173 232 0.93 Arginosuccinate synthase HAS-barrel PF09378.10 92 pCP023447_00074 - 501 0.061 13.5 0.1 1 2 9.9e-05 0.25 11.5 0.1 5 66 28 94 25 116 0.71 HAS barrel domain HAS-barrel PF09378.10 92 pCP023447_00074 - 501 0.061 13.5 0.1 2 2 3 7.8e+03 -2.9 0.0 52 73 201 222 184 228 0.67 HAS barrel domain Fe_dep_repress PF01325.19 60 pCP023447_00074 - 501 0.074 13.3 0.0 1 1 7.4e-05 0.19 11.9 0.0 32 54 198 220 194 222 0.91 Iron dependent repressor, N-terminal DNA binding domain ATP-synt PF00231.19 279 pCP023447_00075 - 294 4.2e-83 279.3 12.2 1 1 1e-86 4.7e-83 279.1 12.2 1 278 3 292 3 293 0.91 ATP synthase PTEN_C2 PF10409.9 135 pCP023447_00075 - 294 0.11 12.3 0.8 1 1 4.8e-05 0.22 11.3 0.8 36 88 32 88 3 91 0.72 C2 domain of PTEN tumour-suppressor protein Snf7 PF03357.21 173 pCP023447_00075 - 294 0.12 12.0 8.4 1 2 7.4e-06 0.033 13.8 3.2 65 118 2 61 1 66 0.87 Snf7 Snf7 PF03357.21 173 pCP023447_00075 - 294 0.12 12.0 8.4 2 2 0.096 4.3e+02 0.4 0.2 82 102 248 268 222 293 0.66 Snf7 BLOC1_2 PF10046.9 96 pCP023447_00075 - 294 6.4 7.2 11.4 1 2 0.055 2.4e+02 2.1 2.6 14 68 10 64 2 71 0.65 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP023447_00075 - 294 6.4 7.2 11.4 2 2 0.00036 1.6 9.1 1.6 20 62 234 276 219 294 0.83 Biogenesis of lysosome-related organelles complex-1 subunit 2 ATP-synt_ab PF00006.25 213 pCP023447_00076 - 465 6.6e-65 218.7 0.0 1 1 3.2e-68 9.7e-65 218.2 0.0 1 213 132 345 132 345 0.97 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 69 pCP023447_00076 - 465 1.2e-18 67.3 0.1 1 1 1.2e-21 3.4e-18 65.9 0.1 1 69 5 75 5 75 0.93 ATP synthase alpha/beta family, beta-barrel domain T3SS_ATPase_C PF18269.1 72 pCP023447_00076 - 465 0.014 15.2 0.8 1 2 8.8e-05 0.26 11.2 0.2 3 28 355 380 353 412 0.71 T3SS EscN ATPase C-terminal domain T3SS_ATPase_C PF18269.1 72 pCP023447_00076 - 465 0.014 15.2 0.8 2 2 0.25 7.6e+02 0.1 0.0 38 50 452 464 451 465 0.87 T3SS EscN ATPase C-terminal domain RsgA_GTPase PF03193.16 167 pCP023447_00076 - 465 0.047 13.6 0.0 1 1 3.5e-05 0.1 12.5 0.0 90 157 136 203 118 204 0.88 RsgA GTPase NB-ARC PF00931.22 252 pCP023447_00076 - 465 0.11 11.7 0.3 1 2 7.5e-05 0.22 10.7 0.1 23 55 148 180 134 212 0.84 NB-ARC domain NB-ARC PF00931.22 252 pCP023447_00076 - 465 0.11 11.7 0.3 2 2 0.81 2.4e+03 -2.6 0.0 8 28 364 383 359 405 0.78 NB-ARC domain AAA_19 PF13245.6 146 pCP023447_00076 - 465 0.16 12.3 0.7 1 2 9.6e-05 0.29 11.5 0.1 8 34 143 169 138 180 0.84 AAA domain AAA_19 PF13245.6 146 pCP023447_00076 - 465 0.16 12.3 0.7 2 2 4.5 1.4e+04 -3.7 0.0 97 116 371 391 341 398 0.69 AAA domain ATP-synt_DE_N PF02823.16 80 pCP023447_00077 - 129 2.7e-24 84.9 0.2 1 1 1.8e-28 3.3e-24 84.6 0.2 2 80 6 84 5 84 0.97 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MotA_ExbB PF01618.16 127 pCP023447_00078 - 184 3.1e-25 88.4 0.1 1 1 2.2e-29 4e-25 88.0 0.1 22 123 72 171 48 175 0.88 MotA/TolQ/ExbB proton channel family ExbD PF02472.16 130 pCP023447_00079 - 129 2.8e-28 98.7 2.3 1 1 1.8e-32 3.2e-28 98.5 2.3 3 128 5 129 4 129 0.96 Biopolymer transport protein ExbD/TolR TonB_2 PF13103.6 85 pCP023447_00080 - 259 1.5e-12 47.6 0.1 1 1 7.6e-16 2.7e-12 46.7 0.1 1 81 167 248 167 251 0.84 TonB C terminal SHE3 PF17078.5 228 pCP023447_00080 - 259 0.0069 16.1 2.0 1 1 3.1e-06 0.011 15.5 2.0 148 205 77 151 63 198 0.70 SWI5-dependent HO expression protein 3 TRA-1_regulated PF02343.16 130 pCP023447_00080 - 259 0.15 12.1 1.4 1 2 6.7e-05 0.24 11.5 0.8 19 96 37 119 27 140 0.82 TRA-1 regulated protein R03H10.4 TRA-1_regulated PF02343.16 130 pCP023447_00080 - 259 0.15 12.1 1.4 2 2 0.95 3.4e+03 -2.0 0.0 47 82 135 169 117 174 0.61 TRA-1 regulated protein R03H10.4 DUF3349 PF11829.8 95 pCP023447_00080 - 259 0.36 11.6 2.2 1 2 0.00016 0.56 11.0 0.5 40 83 53 99 40 105 0.77 Protein of unknown function (DUF3349) DUF3349 PF11829.8 95 pCP023447_00080 - 259 0.36 11.6 2.2 2 2 0.67 2.4e+03 -0.6 0.0 39 62 140 164 109 192 0.74 Protein of unknown function (DUF3349) DUF948 PF06103.11 89 pCP023447_00080 - 259 8.7 6.7 6.8 1 2 0.0017 6.2 7.2 3.7 33 82 64 114 12 119 0.56 Bacterial protein of unknown function (DUF948) DUF948 PF06103.11 89 pCP023447_00080 - 259 8.7 6.7 6.8 2 2 2.1 7.4e+03 -2.7 0.1 43 53 137 147 131 164 0.52 Bacterial protein of unknown function (DUF948) Pectate_lyase22 PF14583.6 386 pCP023447_00081 - 402 1.9e-08 33.4 2.3 1 3 0.29 7.5e+02 -1.5 0.0 46 75 183 213 159 223 0.69 Oligogalacturonate lyase Pectate_lyase22 PF14583.6 386 pCP023447_00081 - 402 1.9e-08 33.4 2.3 2 3 1.4e-10 3.5e-07 29.2 0.3 44 117 226 299 221 323 0.83 Oligogalacturonate lyase Pectate_lyase22 PF14583.6 386 pCP023447_00081 - 402 1.9e-08 33.4 2.3 3 3 0.015 37 2.8 0.0 57 99 329 369 319 385 0.83 Oligogalacturonate lyase PD40 PF07676.12 38 pCP023447_00081 - 402 2.7e-06 27.1 1.2 1 3 0.00012 0.3 11.1 0.2 2 38 255 291 254 291 0.76 WD40-like Beta Propeller Repeat PD40 PF07676.12 38 pCP023447_00081 - 402 2.7e-06 27.1 1.2 2 3 0.018 47 4.1 0.0 23 37 319 335 317 336 0.93 WD40-like Beta Propeller Repeat PD40 PF07676.12 38 pCP023447_00081 - 402 2.7e-06 27.1 1.2 3 3 0.00079 2 8.4 0.0 11 26 353 368 345 376 0.85 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 354 pCP023447_00081 - 402 0.00048 19.0 1.1 1 3 0.00037 0.96 8.1 0.1 244 325 182 258 133 262 0.63 Dipeptidyl peptidase IV (DPP IV) N-terminal region DPPIV_N PF00930.21 354 pCP023447_00081 - 402 0.00048 19.0 1.1 2 3 0.00048 1.2 7.8 0.3 24 93 243 318 239 323 0.85 Dipeptidyl peptidase IV (DPP IV) N-terminal region DPPIV_N PF00930.21 354 pCP023447_00081 - 402 0.00048 19.0 1.1 3 3 0.03 77 1.9 0.0 25 60 334 368 321 371 0.85 Dipeptidyl peptidase IV (DPP IV) N-terminal region TolB_N PF04052.13 106 pCP023447_00081 - 402 0.014 15.5 0.1 1 2 1.9e-05 0.05 13.8 0.1 3 56 22 74 20 85 0.84 TolB amino-terminal domain TolB_N PF04052.13 106 pCP023447_00081 - 402 0.014 15.5 0.1 2 2 1.7 4.4e+03 -2.1 0.0 58 82 149 173 139 178 0.73 TolB amino-terminal domain MNE1 PF13762.6 150 pCP023447_00081 - 402 0.017 15.1 0.6 1 2 5.9e-05 0.15 12.0 0.3 28 77 39 86 30 121 0.88 Mitochondrial splicing apparatus component MNE1 PF13762.6 150 pCP023447_00081 - 402 0.017 15.1 0.6 2 2 0.24 6.1e+02 0.3 0.0 69 90 244 265 228 278 0.80 Mitochondrial splicing apparatus component Kelch_3 PF13415.6 49 pCP023447_00081 - 402 0.25 11.7 4.5 1 4 0.84 2.1e+03 -0.9 0.1 18 29 75 86 68 101 0.79 Galactose oxidase, central domain Kelch_3 PF13415.6 49 pCP023447_00081 - 402 0.25 11.7 4.5 2 4 0.021 54 4.2 0.0 20 34 199 213 190 224 0.81 Galactose oxidase, central domain Kelch_3 PF13415.6 49 pCP023447_00081 - 402 0.25 11.7 4.5 3 4 0.0065 17 5.9 0.0 19 34 242 257 231 269 0.86 Galactose oxidase, central domain Kelch_3 PF13415.6 49 pCP023447_00081 - 402 0.25 11.7 4.5 4 4 0.75 1.9e+03 -0.7 0.0 20 25 317 322 299 357 0.58 Galactose oxidase, central domain NUMOD1 PF07453.13 37 pCP023447_00081 - 402 0.72 10.2 4.4 1 3 0.57 1.5e+03 -0.3 0.1 6 12 203 209 201 215 0.83 NUMOD1 domain NUMOD1 PF07453.13 37 pCP023447_00081 - 402 0.72 10.2 4.4 2 3 0.00058 1.5 9.2 0.7 3 19 244 263 243 264 0.85 NUMOD1 domain NUMOD1 PF07453.13 37 pCP023447_00081 - 402 0.72 10.2 4.4 3 3 2.7 6.9e+03 -2.5 0.0 7 15 264 272 264 277 0.85 NUMOD1 domain OmpA PF00691.20 95 pCP023447_00082 - 165 7.2e-21 74.4 0.0 1 1 1.9e-24 1.1e-20 73.8 0.0 1 95 61 157 61 157 0.95 OmpA family ApbE PF02424.15 258 pCP023447_00082 - 165 0.028 14.0 0.0 1 1 6e-06 0.036 13.6 0.0 30 110 44 135 38 161 0.75 ApbE family Pilus_CpaD PF09476.10 201 pCP023447_00082 - 165 0.051 13.3 0.3 1 2 0.0095 57 3.4 0.1 2 20 10 28 9 38 0.70 Pilus biogenesis CpaD protein (pilus_cpaD) Pilus_CpaD PF09476.10 201 pCP023447_00082 - 165 0.051 13.3 0.3 2 2 0.0003 1.8 8.2 0.0 86 121 108 143 93 156 0.85 Pilus biogenesis CpaD protein (pilus_cpaD) TPR_6 PF13174.6 33 pCP023447_00083 - 315 5.6e-07 29.8 0.1 1 2 0.0028 2.8 8.8 0.0 3 25 238 260 236 260 0.91 Tetratricopeptide repeat TPR_6 PF13174.6 33 pCP023447_00083 - 315 5.6e-07 29.8 0.1 2 2 2.9e-06 0.0029 18.1 0.0 3 33 275 305 273 305 0.97 Tetratricopeptide repeat TPR_2 PF07719.17 34 pCP023447_00083 - 315 1.5e-05 24.8 0.1 1 2 6.3e-07 0.00062 19.7 0.1 1 27 235 261 235 266 0.91 Tetratricopeptide repeat TPR_2 PF07719.17 34 pCP023447_00083 - 315 1.5e-05 24.8 0.1 2 2 0.23 2.3e+02 2.3 0.0 2 33 273 304 272 305 0.83 Tetratricopeptide repeat TPR_8 PF13181.6 34 pCP023447_00083 - 315 0.00032 20.7 0.5 1 1 1.3e-06 0.0013 18.8 0.5 1 31 235 265 235 267 0.94 Tetratricopeptide repeat TPR_1 PF00515.28 34 pCP023447_00083 - 315 0.00034 20.3 0.7 1 2 1.3e-06 0.0013 18.4 0.6 1 27 235 261 235 264 0.90 Tetratricopeptide repeat TPR_1 PF00515.28 34 pCP023447_00083 - 315 0.00034 20.3 0.7 2 2 8.3 8.3e+03 -3.1 0.0 24 32 276 284 275 285 0.82 Tetratricopeptide repeat TPR_16 PF13432.6 68 pCP023447_00083 - 315 0.0017 19.0 0.0 1 2 4.4e-05 0.044 14.4 0.0 8 58 212 259 205 261 0.87 Tetratricopeptide repeat TPR_16 PF13432.6 68 pCP023447_00083 - 315 0.0017 19.0 0.0 2 2 0.31 3.1e+02 2.1 0.0 36 68 274 306 267 306 0.91 Tetratricopeptide repeat Jnk-SapK_ap_N PF09744.9 156 pCP023447_00083 - 315 0.0051 17.0 9.1 1 3 5.2e-06 0.0051 17.0 9.1 36 118 44 125 43 135 0.89 JNK_SAPK-associated protein-1 Jnk-SapK_ap_N PF09744.9 156 pCP023447_00083 - 315 0.0051 17.0 9.1 2 3 2.3 2.3e+03 -1.3 1.9 71 91 180 200 124 215 0.70 JNK_SAPK-associated protein-1 Jnk-SapK_ap_N PF09744.9 156 pCP023447_00083 - 315 0.0051 17.0 9.1 3 3 1.2 1.2e+03 -0.3 0.8 72 92 181 201 167 231 0.64 JNK_SAPK-associated protein-1 BLOC1_2 PF10046.9 96 pCP023447_00083 - 315 0.0088 16.3 8.4 1 3 8.8e-06 0.0088 16.3 8.4 11 89 35 114 26 115 0.87 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP023447_00083 - 315 0.0088 16.3 8.4 2 3 0.33 3.3e+02 1.7 0.8 14 51 108 146 102 161 0.68 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pCP023447_00083 - 315 0.0088 16.3 8.4 3 3 4.5 4.5e+03 -2.0 1.4 57 57 182 182 124 215 0.62 Biogenesis of lysosome-related organelles complex-1 subunit 2 CorA PF01544.18 292 pCP023447_00083 - 315 0.043 13.1 3.5 1 1 7.4e-05 0.074 12.4 3.5 106 225 36 158 24 170 0.83 CorA-like Mg2+ transporter protein TPR_19 PF14559.6 68 pCP023447_00083 - 315 0.043 14.3 0.1 1 1 0.00022 0.22 12.1 0.0 2 62 246 309 245 311 0.92 Tetratricopeptide repeat ANAPC3 PF12895.7 82 pCP023447_00083 - 315 0.067 13.4 0.4 1 2 0.00021 0.21 11.8 0.3 22 71 234 284 223 291 0.82 Anaphase-promoting complex, cyclosome, subunit 3 ANAPC3 PF12895.7 82 pCP023447_00083 - 315 0.067 13.4 0.4 2 2 0.0024 2.4 8.4 0.3 2 53 248 303 247 308 0.78 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 77 pCP023447_00083 - 315 0.071 13.4 0.0 1 1 0.00017 0.17 12.2 0.0 6 35 238 267 234 297 0.70 Tetratricopeptide repeat DUF1664 PF07889.12 124 pCP023447_00083 - 315 0.08 13.0 11.4 1 2 0.00093 0.92 9.5 1.7 57 122 35 100 29 101 0.79 Protein of unknown function (DUF1664) DUF1664 PF07889.12 124 pCP023447_00083 - 315 0.08 13.0 11.4 2 2 0.00021 0.21 11.7 2.1 48 99 86 137 81 147 0.89 Protein of unknown function (DUF1664) Tropomyosin_1 PF12718.7 143 pCP023447_00083 - 315 0.85 9.8 23.7 1 2 0.00013 0.13 12.5 14.0 19 102 42 125 35 133 0.92 Tropomyosin like Tropomyosin_1 PF12718.7 143 pCP023447_00083 - 315 0.85 9.8 23.7 2 2 0.12 1.2e+02 2.8 2.1 52 96 179 224 150 232 0.74 Tropomyosin like DUF4407 PF14362.6 298 pCP023447_00083 - 315 1.4 8.2 10.9 1 1 0.0022 2.2 7.6 10.9 116 237 50 199 34 227 0.66 Domain of unknown function (DUF4407) FAM76 PF16046.5 300 pCP023447_00083 - 315 1.4 8.2 12.8 1 2 6.2e-05 0.062 12.6 4.3 206 296 42 135 17 137 0.81 FAM76 protein FAM76 PF16046.5 300 pCP023447_00083 - 315 1.4 8.2 12.8 2 2 0.3 2.9e+02 0.6 1.3 156 189 178 210 149 263 0.54 FAM76 protein DUF4140 PF13600.6 98 pCP023447_00083 - 315 1.9 9.0 11.3 1 3 0.012 12 6.4 0.1 53 96 32 75 20 82 0.81 N-terminal domain of unknown function (DUF4140) DUF4140 PF13600.6 98 pCP023447_00083 - 315 1.9 9.0 11.3 2 3 0.038 38 4.8 1.5 47 98 86 137 77 137 0.86 N-terminal domain of unknown function (DUF4140) DUF4140 PF13600.6 98 pCP023447_00083 - 315 1.9 9.0 11.3 3 3 0.11 1.1e+02 3.4 0.3 23 66 149 194 145 227 0.67 N-terminal domain of unknown function (DUF4140) Tweety PF04906.13 406 pCP023447_00083 - 315 7.2 5.2 6.4 1 1 0.005 5 5.7 5.0 86 164 55 137 51 167 0.76 Tweety Golgin_A5 PF09787.9 306 pCP023447_00083 - 315 8.1 5.8 18.9 1 1 0.036 35 3.7 18.6 45 180 42 166 26 228 0.54 Golgin subfamily A member 5 FKBP_C PF00254.28 94 pCP023447_00084 - 189 2.6e-06 27.7 0.1 1 1 3e-10 5.3e-06 26.7 0.1 5 84 3 82 1 111 0.88 FKBP-type peptidyl-prolyl cis-trans isomerase Acyl_transf_1 PF00698.21 319 pCP023447_00085 - 306 6.3e-21 75.2 0.0 1 1 8.3e-25 7.5e-21 75.0 0.0 2 264 5 272 4 296 0.77 Acyl transferase domain SAT PF16073.5 240 pCP023447_00085 - 306 0.032 14.0 0.0 1 1 1.1e-05 0.096 12.4 0.0 73 189 57 154 33 190 0.80 Starter unit:ACP transacylase in aflatoxin biosynthesis PNP_UDP_1 PF01048.20 234 pCP023447_00086 - 228 4.3e-43 147.2 0.0 1 1 2.8e-47 5e-43 147.0 0.0 1 225 2 217 2 227 0.86 Phosphorylase superfamily ATP_bind_3 PF01171.20 182 pCP023447_00087 - 251 5.8e-22 78.3 0.0 1 1 1.4e-25 8.3e-22 77.8 0.0 2 162 28 190 27 195 0.86 PP-loop family NAD_synthase PF02540.17 242 pCP023447_00087 - 251 0.0011 18.1 0.0 1 1 2.6e-07 0.0015 17.7 0.0 19 120 26 125 6 160 0.83 NAD synthase Asn_synthase PF00733.21 355 pCP023447_00087 - 251 0.029 14.0 0.1 1 1 6.8e-06 0.041 13.6 0.1 21 85 29 96 22 137 0.81 Asparagine synthase Isochorismatase PF00857.20 175 pCP023447_00088 - 173 9.1e-14 52.0 0.0 1 1 1.1e-17 1e-13 51.9 0.0 2 170 4 172 3 173 0.91 Isochorismatase family rpo132 PF12415.8 32 pCP023447_00088 - 173 0.14 11.5 0.1 1 3 0.036 3.2e+02 0.7 0.0 1 10 13 22 13 23 0.95 Poxvirus DNA dependent RNA polymerase rpo132 PF12415.8 32 pCP023447_00088 - 173 0.14 11.5 0.1 2 3 0.59 5.3e+03 -3.2 0.1 7 10 47 50 47 54 0.82 Poxvirus DNA dependent RNA polymerase rpo132 PF12415.8 32 pCP023447_00088 - 173 0.14 11.5 0.1 3 3 0.00029 2.6 7.4 0.0 3 14 71 82 70 83 0.95 Poxvirus DNA dependent RNA polymerase RecO_N_2 PF13114.6 71 pCP023447_00089 - 204 2e-32 110.7 0.1 1 2 9.3e-36 5.6e-32 109.3 0.0 1 71 1 71 1 71 0.99 RecO N terminal RecO_N_2 PF13114.6 71 pCP023447_00089 - 204 2e-32 110.7 0.1 2 2 1.2 7.3e+03 -3.2 0.0 59 69 90 100 88 101 0.80 RecO N terminal Mad3_BUB1_I PF08311.12 124 pCP023447_00089 - 204 0.021 14.8 0.1 1 1 6e-06 0.036 14.0 0.1 17 58 74 116 65 156 0.80 Mad3/BUB1 homology region 1 RecO_N PF11967.8 80 pCP023447_00089 - 204 0.022 14.7 0.0 1 1 6.2e-06 0.037 14.0 0.0 7 30 2 25 1 43 0.85 Recombination protein O N terminal UPF0054 PF02130.17 128 pCP023447_00090 - 135 2.7e-34 117.8 1.0 1 1 3.5e-38 3.1e-34 117.5 1.0 22 127 18 121 4 122 0.91 Uncharacterized protein family UPF0054 PIG-S PF10510.9 512 pCP023447_00090 - 135 0.036 12.9 0.0 1 1 4e-06 0.036 12.9 0.0 321 388 64 124 19 135 0.77 Phosphatidylinositol-glycan biosynthesis class S protein DUF573 PF04504.14 95 pCP023447_00091 - 229 0.021 15.5 8.4 1 3 0.093 8.3e+02 0.7 0.1 35 65 61 92 30 121 0.55 Protein of unknown function, DUF573 DUF573 PF04504.14 95 pCP023447_00091 - 229 0.021 15.5 8.4 2 3 5.6e-06 0.051 14.2 4.7 14 88 86 161 58 165 0.76 Protein of unknown function, DUF573 DUF573 PF04504.14 95 pCP023447_00091 - 229 0.021 15.5 8.4 3 3 0.064 5.8e+02 1.2 0.0 5 27 190 212 186 227 0.74 Protein of unknown function, DUF573 GNAT_acetyltr_2 PF13718.6 227 pCP023447_00091 - 229 0.18 11.2 3.2 1 2 0.07 6.3e+02 -0.4 0.0 113 142 14 43 7 107 0.59 GNAT acetyltransferase 2 GNAT_acetyltr_2 PF13718.6 227 pCP023447_00091 - 229 0.18 11.2 3.2 2 2 1.9e-05 0.17 11.2 1.4 117 189 129 202 65 208 0.72 GNAT acetyltransferase 2 Dus PF01207.17 310 pCP023447_00092 - 308 6.2e-76 255.5 0.0 1 1 3e-79 7.6e-76 255.2 0.0 2 302 11 302 10 307 0.94 Dihydrouridine synthase (Dus) TIM PF00121.18 243 pCP023447_00092 - 308 0.00027 20.4 0.1 1 1 1.9e-07 0.00047 19.6 0.1 195 234 185 224 175 233 0.89 Triosephosphate isomerase TMP-TENI PF02581.17 181 pCP023447_00092 - 308 0.0067 15.8 0.1 1 1 5.7e-06 0.014 14.7 0.1 109 175 152 217 129 222 0.72 Thiamine monophosphate synthase PdxJ PF03740.13 234 pCP023447_00092 - 308 0.0093 15.1 0.4 1 3 0.014 36 3.4 0.0 22 44 147 169 137 177 0.85 Pyridoxal phosphate biosynthesis protein PdxJ PdxJ PF03740.13 234 pCP023447_00092 - 308 0.0093 15.1 0.4 2 3 0.0002 0.52 9.4 0.0 170 215 179 224 168 230 0.88 Pyridoxal phosphate biosynthesis protein PdxJ PdxJ PF03740.13 234 pCP023447_00092 - 308 0.0093 15.1 0.4 3 3 1.3 3.2e+03 -3.0 0.1 39 61 249 271 241 297 0.62 Pyridoxal phosphate biosynthesis protein PdxJ BtpA PF03437.15 254 pCP023447_00092 - 308 0.056 12.9 0.0 1 1 3.5e-05 0.091 12.2 0.0 185 228 176 221 148 244 0.88 BtpA family EAP30 PF04157.16 236 pCP023447_00092 - 308 0.13 11.5 0.0 1 1 9.2e-05 0.23 10.7 0.0 31 78 112 166 104 185 0.83 EAP30/Vps36 family HTH_48 PF17906.1 50 pCP023447_00092 - 308 0.18 12.0 0.5 1 4 2.6 6.6e+03 -2.7 0.0 21 36 31 46 23 48 0.74 HTH domain in Mos1 transposase HTH_48 PF17906.1 50 pCP023447_00092 - 308 0.18 12.0 0.5 2 4 0.29 7.4e+02 0.4 0.0 23 36 152 165 144 173 0.86 HTH domain in Mos1 transposase HTH_48 PF17906.1 50 pCP023447_00092 - 308 0.18 12.0 0.5 3 4 0.03 76 3.5 0.0 8 20 229 241 228 247 0.87 HTH domain in Mos1 transposase HTH_48 PF17906.1 50 pCP023447_00092 - 308 0.18 12.0 0.5 4 4 0.061 1.6e+02 2.5 0.0 9 29 271 291 270 305 0.86 HTH domain in Mos1 transposase DUF910 PF06014.11 61 pCP023447_00093 - 328 0.0037 17.3 2.3 1 2 0.00074 4.4 7.4 0.3 18 53 169 204 166 205 0.92 Bacterial protein of unknown function (DUF910) DUF910 PF06014.11 61 pCP023447_00093 - 328 0.0037 17.3 2.3 2 2 0.00032 1.9 8.5 0.1 23 52 222 251 213 255 0.92 Bacterial protein of unknown function (DUF910) Utp13 PF08625.11 142 pCP023447_00093 - 328 0.012 15.6 4.3 1 2 0.037 2.2e+02 1.7 0.3 6 68 84 144 79 154 0.68 Utp13 specific WD40 associated domain Utp13 PF08625.11 142 pCP023447_00093 - 328 0.012 15.6 4.3 2 2 2.7e-06 0.016 15.1 0.4 5 43 239 283 237 326 0.78 Utp13 specific WD40 associated domain DUF325 PF03804.13 73 pCP023447_00093 - 328 0.076 13.0 0.1 1 1 3.5e-05 0.21 11.6 0.1 14 37 118 141 108 156 0.81 Viral proteins of unknown function zf-dskA_traR PF01258.17 36 pCP023447_00094 - 120 1.3e-11 44.2 2.3 1 1 3.5e-15 2.1e-11 43.6 2.3 1 36 79 114 79 114 0.96 Prokaryotic dksA/traR C4-type zinc finger Fib_alpha PF08702.10 143 pCP023447_00094 - 120 0.1 12.8 3.6 1 2 0.00013 0.77 9.9 0.8 76 123 3 50 1 57 0.88 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pCP023447_00094 - 120 0.1 12.8 3.6 2 2 0.0084 50 4.1 0.1 30 57 59 86 54 114 0.77 Fibrinogen alpha/beta chain family DUF1289 PF06945.13 48 pCP023447_00094 - 120 0.11 12.3 4.4 1 3 0.00013 0.75 9.6 0.1 23 45 3 25 1 28 0.91 Protein of unknown function (DUF1289) DUF1289 PF06945.13 48 pCP023447_00094 - 120 0.11 12.3 4.4 2 3 0.25 1.5e+03 -0.9 0.2 14 19 82 87 78 92 0.79 Protein of unknown function (DUF1289) DUF1289 PF06945.13 48 pCP023447_00094 - 120 0.11 12.3 4.4 3 3 0.011 67 3.4 0.1 9 21 98 110 97 117 0.78 Protein of unknown function (DUF1289) SPOUT_MTase PF02590.17 154 pCP023447_00095 - 149 7.4e-40 136.4 0.5 1 1 9.2e-44 8.3e-40 136.3 0.5 1 154 1 148 1 148 0.85 Predicted SPOUT methyltransferase BBP1_C PF15272.6 192 pCP023447_00095 - 149 0.001 19.0 1.1 1 1 1.8e-07 0.0016 18.3 1.1 55 95 10 52 2 61 0.86 Spindle pole body component BBP1, C-terminal Carboxyl_trans PF01039.22 494 pCP023447_00096 - 280 1.4e-21 76.8 0.2 1 1 5.3e-25 3.2e-21 75.5 0.2 12 179 59 238 54 249 0.85 Carboxyl transferase domain zf-ACC PF17848.1 26 pCP023447_00096 - 280 1.1e-07 31.7 9.0 1 1 3.2e-11 1.9e-07 31.0 9.0 1 26 24 49 24 49 1.00 Acetyl-coA carboxylase zinc finger domain RNA_POL_M_15KD PF02150.16 36 pCP023447_00096 - 280 0.071 13.0 1.7 1 1 7.5e-05 0.45 10.4 1.8 4 31 27 53 27 58 0.86 RNA polymerases M/15 Kd subunit Inositol_P PF00459.25 272 pCP023447_00097 - 240 1.3e-14 54.4 0.0 1 1 2.1e-18 1.9e-14 53.9 0.0 66 228 60 208 40 211 0.83 Inositol monophosphatase family FBPase PF00316.20 189 pCP023447_00097 - 240 0.015 14.8 0.0 1 1 2.8e-06 0.025 14.1 0.0 61 136 40 108 27 120 0.74 Fructose-1-6-bisphosphatase, N-terminal domain Bac_surface_Ag PF01103.23 324 pCP023447_00098 - 739 4.4e-68 230.2 10.5 1 1 2e-71 7.3e-68 229.4 10.5 1 324 442 739 442 739 0.94 Surface antigen POTRA PF07244.15 80 pCP023447_00098 - 739 2e-39 134.0 36.8 1 6 1.1e-08 3.9e-05 24.1 0.7 2 79 19 84 18 85 0.90 Surface antigen variable number repeat POTRA PF07244.15 80 pCP023447_00098 - 739 2e-39 134.0 36.8 2 6 5.2e-11 1.9e-07 31.6 1.0 1 78 86 162 86 164 0.79 Surface antigen variable number repeat POTRA PF07244.15 80 pCP023447_00098 - 739 2e-39 134.0 36.8 3 6 1.2e-09 4.4e-06 27.2 0.1 2 80 168 257 167 257 0.86 Surface antigen variable number repeat POTRA PF07244.15 80 pCP023447_00098 - 739 2e-39 134.0 36.8 4 6 5.8e-09 2.1e-05 25.0 1.8 1 77 260 337 260 339 0.84 Surface antigen variable number repeat POTRA PF07244.15 80 pCP023447_00098 - 739 2e-39 134.0 36.8 5 6 2.2e-16 8e-13 48.8 3.4 1 79 343 414 343 415 0.95 Surface antigen variable number repeat POTRA PF07244.15 80 pCP023447_00098 - 739 2e-39 134.0 36.8 6 6 4 1.4e+04 -3.3 0.2 46 77 492 520 491 522 0.62 Surface antigen variable number repeat POTRA_2 PF08479.11 76 pCP023447_00098 - 739 9e-06 25.4 2.6 1 5 0.031 1.1e+02 2.7 0.1 2 43 19 60 18 68 0.90 POTRA domain, ShlB-type POTRA_2 PF08479.11 76 pCP023447_00098 - 739 9e-06 25.4 2.6 2 5 0.00017 0.61 10.0 0.1 2 66 87 151 87 158 0.93 POTRA domain, ShlB-type POTRA_2 PF08479.11 76 pCP023447_00098 - 739 9e-06 25.4 2.6 3 5 0.11 3.8e+02 1.0 0.0 2 23 168 189 167 198 0.85 POTRA domain, ShlB-type POTRA_2 PF08479.11 76 pCP023447_00098 - 739 9e-06 25.4 2.6 4 5 0.06 2.2e+02 1.8 0.0 32 56 209 233 203 238 0.80 POTRA domain, ShlB-type POTRA_2 PF08479.11 76 pCP023447_00098 - 739 9e-06 25.4 2.6 5 5 0.009 32 4.4 0.0 12 62 270 323 260 339 0.71 POTRA domain, ShlB-type POTRA_1 PF08478.10 69 pCP023447_00098 - 739 3.7e-05 23.9 4.5 1 4 0.019 69 3.8 0.1 2 31 19 48 18 72 0.86 POTRA domain, FtsQ-type POTRA_1 PF08478.10 69 pCP023447_00098 - 739 3.7e-05 23.9 4.5 2 4 0.00099 3.5 8.0 0.1 3 46 88 131 87 137 0.91 POTRA domain, FtsQ-type POTRA_1 PF08478.10 69 pCP023447_00098 - 739 3.7e-05 23.9 4.5 3 4 1 3.6e+03 -1.7 0.0 3 23 169 189 169 198 0.79 POTRA domain, FtsQ-type POTRA_1 PF08478.10 69 pCP023447_00098 - 739 3.7e-05 23.9 4.5 4 4 0.00016 0.59 10.5 0.1 3 55 345 397 343 409 0.91 POTRA domain, FtsQ-type ShlB PF03865.13 312 pCP023447_00098 - 739 0.00035 20.1 1.4 1 2 0.6 2.1e+03 -2.2 0.0 128 164 376 412 347 435 0.73 Haemolysin secretion/activation protein ShlB/FhaC/HecB ShlB PF03865.13 312 pCP023447_00098 - 739 0.00035 20.1 1.4 2 2 1.6e-07 0.00057 19.4 0.2 199 299 587 693 557 705 0.71 Haemolysin secretion/activation protein ShlB/FhaC/HecB PDH PF02153.17 258 pCP023447_00099 - 275 2.6e-69 233.1 0.2 1 1 1.3e-72 2.9e-69 233.0 0.2 2 258 16 267 15 267 0.97 Prephenate dehydrogenase F420_oxidored PF03807.17 97 pCP023447_00099 - 275 0.00016 22.2 0.2 1 2 2.8e-07 0.00063 20.3 0.0 1 93 2 89 2 92 0.76 NADP oxidoreductase coenzyme F420-dependent F420_oxidored PF03807.17 97 pCP023447_00099 - 275 0.00016 22.2 0.2 2 2 1.7 3.7e+03 -1.4 0.0 35 67 148 178 140 203 0.55 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 158 pCP023447_00099 - 275 0.00044 20.5 0.0 1 1 3.4e-07 0.00076 19.7 0.0 1 106 2 107 2 128 0.69 NAD binding domain of 6-phosphogluconate dehydrogenase IPT PF01745.16 233 pCP023447_00099 - 275 0.03 13.7 0.2 1 1 2.2e-05 0.05 13.0 0.2 80 148 189 258 182 273 0.82 Isopentenyl transferase FNIP PF05725.12 44 pCP023447_00099 - 275 0.048 13.8 0.6 1 1 5.1e-05 0.11 12.6 0.6 9 37 80 106 76 108 0.78 FNIP Repeat IlvN PF07991.12 165 pCP023447_00099 - 275 0.072 12.7 0.0 1 2 0.00016 0.36 10.4 0.0 6 75 2 73 1 83 0.78 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvN PF07991.12 165 pCP023447_00099 - 275 0.072 12.7 0.0 2 2 0.34 7.6e+02 -0.4 0.0 77 108 139 172 131 179 0.76 Acetohydroxy acid isomeroreductase, NADPH-binding domain DUF4411 PF14367.6 162 pCP023447_00099 - 275 0.13 12.2 0.9 1 2 1.9 4.3e+03 -2.5 0.0 37 84 137 183 128 198 0.57 Domain of unknown function (DUF4411) DUF4411 PF14367.6 162 pCP023447_00099 - 275 0.13 12.2 0.9 2 2 9.4e-05 0.21 11.5 0.3 20 63 219 270 214 274 0.92 Domain of unknown function (DUF4411) Semialdhyde_dh PF01118.24 121 pCP023447_00099 - 275 0.15 12.5 0.2 1 2 0.00021 0.46 10.9 0.1 1 101 2 95 2 140 0.77 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 121 pCP023447_00099 - 275 0.15 12.5 0.2 2 2 1.3 2.8e+03 -1.3 0.0 67 72 161 166 107 204 0.60 Semialdehyde dehydrogenase, NAD binding domain Peptidase_M23 PF01551.22 96 pCP023447_00100 - 457 1.3e-17 63.7 2.8 1 3 1.2 7.5e+03 -2.8 0.0 30 50 60 80 53 88 0.66 Peptidase family M23 Peptidase_M23 PF01551.22 96 pCP023447_00100 - 457 1.3e-17 63.7 2.8 2 3 0.31 1.8e+03 -0.8 0.0 30 66 156 193 144 201 0.71 Peptidase family M23 Peptidase_M23 PF01551.22 96 pCP023447_00100 - 457 1.3e-17 63.7 2.8 3 3 2.9e-21 1.7e-17 63.4 0.3 2 94 335 427 334 429 0.95 Peptidase family M23 Sigma_reg_N PF13800.6 90 pCP023447_00100 - 457 0.089 13.1 0.9 1 2 0.00013 0.78 10.1 0.7 5 34 2 31 1 37 0.86 Sigma factor regulator N-terminal Sigma_reg_N PF13800.6 90 pCP023447_00100 - 457 0.089 13.1 0.9 2 2 0.18 1.1e+03 -0.0 0.0 42 68 127 153 124 165 0.86 Sigma factor regulator N-terminal Big_3_2 PF12245.8 123 pCP023447_00100 - 457 0.15 12.3 0.7 1 2 0.045 2.7e+02 1.8 0.1 41 61 56 76 47 88 0.85 Bacterial Ig-like domain Big_3_2 PF12245.8 123 pCP023447_00100 - 457 0.15 12.3 0.7 2 2 0.00059 3.5 7.9 0.1 93 113 202 223 126 231 0.82 Bacterial Ig-like domain LpxC PF03331.13 270 pCP023447_00101 - 294 2.8e-101 338.6 0.0 1 1 1.8e-105 3.2e-101 338.4 0.0 1 269 3 270 3 271 0.99 UDP-3-O-acyl N-acetylglycosamine deacetylase Peptidase_M22 PF00814.25 271 pCP023447_00102 - 133 0.00024 20.9 0.0 1 1 1.7e-08 0.0003 20.6 0.0 30 97 21 83 14 93 0.82 Glycoprotease family GHMP_kinases_N PF00288.26 66 pCP023447_00103 - 292 7.8e-10 38.9 0.0 1 2 2.9e-13 2.6e-09 37.2 0.0 3 66 78 137 76 137 0.79 GHMP kinases N terminal domain GHMP_kinases_N PF00288.26 66 pCP023447_00103 - 292 7.8e-10 38.9 0.0 2 2 1 9.2e+03 -3.0 0.0 41 60 170 188 151 191 0.56 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 85 pCP023447_00103 - 292 0.00048 20.4 0.0 1 2 0.64 5.7e+03 -2.2 0.0 58 79 135 155 133 159 0.77 GHMP kinases C terminal GHMP_kinases_C PF08544.13 85 pCP023447_00103 - 292 0.00048 20.4 0.0 2 2 2e-07 0.0018 18.6 0.0 30 84 224 275 211 276 0.84 GHMP kinases C terminal zf-FPG_IleRS PF06827.14 30 pCP023447_00104 - 65 0.045 13.6 0.1 1 1 4.4e-06 0.079 12.8 0.1 16 29 17 30 11 31 0.83 Zinc finger found in FPG and IleRS IF-2 PF11987.8 105 pCP023447_00105 - 861 3.2e-37 126.8 1.1 1 2 5.1 8.3e+03 -3.0 0.2 50 71 445 467 424 480 0.65 Translation-initiation factor 2 IF-2 PF11987.8 105 pCP023447_00105 - 861 3.2e-37 126.8 1.1 2 2 2e-40 3.2e-37 126.8 1.1 3 105 647 751 645 751 0.94 Translation-initiation factor 2 GTP_EFTU PF00009.27 194 pCP023447_00105 - 861 1.7e-33 115.8 2.5 1 2 3.8 6.2e+03 -3.5 0.4 40 64 152 176 128 200 0.54 Elongation factor Tu GTP binding domain GTP_EFTU PF00009.27 194 pCP023447_00105 - 861 1.7e-33 115.8 2.5 2 2 1e-36 1.7e-33 115.8 2.5 5 189 364 520 360 524 0.90 Elongation factor Tu GTP binding domain IF2_N PF04760.15 54 pCP023447_00105 - 861 6.6e-32 109.1 6.2 1 3 2e-18 3.2e-15 55.7 0.3 1 52 1 51 1 53 0.96 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP023447_00105 - 861 6.6e-32 109.1 6.2 2 3 3.2e-18 5.3e-15 55.0 0.5 2 54 283 333 282 333 0.97 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP023447_00105 - 861 6.6e-32 109.1 6.2 3 3 3 4.9e+03 -2.6 0.0 19 36 725 741 722 741 0.78 Translation initiation factor IF-2, N-terminal region MMR_HSR1 PF01926.23 114 pCP023447_00105 - 861 1.6e-11 44.3 0.2 1 2 4.2 6.8e+03 -2.9 0.2 90 98 142 150 106 191 0.52 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 pCP023447_00105 - 861 1.6e-11 44.3 0.2 2 2 9.6e-15 1.6e-11 44.3 0.2 2 114 365 470 364 470 0.88 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP023447_00105 - 861 1.2e-09 38.4 10.1 1 2 6.4e-05 0.1 13.0 1.8 1 66 550 608 550 613 0.88 Elongation factor Tu domain 2 GTP_EFTU_D2 PF03144.25 74 pCP023447_00105 - 861 1.2e-09 38.4 10.1 2 2 1.1e-09 1.7e-06 28.3 1.4 1 72 782 848 782 850 0.91 Elongation factor Tu domain 2 Ras PF00071.22 162 pCP023447_00105 - 861 1.5e-06 27.9 0.0 1 3 2 3.2e+03 -2.4 0.4 107 129 130 151 119 191 0.64 Ras family Ras PF00071.22 162 pCP023447_00105 - 861 1.5e-06 27.9 0.0 2 3 9.3e-10 1.5e-06 27.9 0.0 3 157 366 520 364 524 0.78 Ras family Ras PF00071.22 162 pCP023447_00105 - 861 1.5e-06 27.9 0.0 3 3 2 3.2e+03 -2.4 0.1 108 147 611 654 602 665 0.73 Ras family Arf PF00025.21 175 pCP023447_00105 - 861 4.8e-06 26.1 1.7 1 3 4.3 7e+03 -3.7 0.1 118 138 130 151 116 172 0.58 ADP-ribosylation factor family Arf PF00025.21 175 pCP023447_00105 - 861 4.8e-06 26.1 1.7 2 3 1.1e-08 1.8e-05 24.3 0.0 17 171 365 519 354 523 0.86 ADP-ribosylation factor family Arf PF00025.21 175 pCP023447_00105 - 861 4.8e-06 26.1 1.7 3 3 0.33 5.4e+02 -0.1 0.1 109 169 601 661 589 666 0.84 ADP-ribosylation factor family FeoB_N PF02421.18 156 pCP023447_00105 - 861 0.00017 21.2 0.2 1 1 5.9e-07 0.00096 18.7 0.2 3 153 365 516 363 519 0.71 Ferrous iron transport protein B RsgA_GTPase PF03193.16 167 pCP023447_00105 - 861 0.00028 20.9 7.5 1 4 3.9 6.3e+03 -3.1 0.8 37 63 128 154 71 185 0.61 RsgA GTPase RsgA_GTPase PF03193.16 167 pCP023447_00105 - 861 0.00028 20.9 7.5 2 4 0.0069 11 5.9 0.0 88 163 351 421 293 425 0.58 RsgA GTPase RsgA_GTPase PF03193.16 167 pCP023447_00105 - 861 0.00028 20.9 7.5 3 4 1.4e-06 0.0023 17.8 0.0 10 96 426 518 419 527 0.78 RsgA GTPase RsgA_GTPase PF03193.16 167 pCP023447_00105 - 861 0.00028 20.9 7.5 4 4 1 1.6e+03 -1.2 0.1 43 84 653 694 635 717 0.63 RsgA GTPase Roc PF08477.13 120 pCP023447_00105 - 861 0.0016 18.6 0.0 1 1 2.7e-06 0.0044 17.2 0.0 2 120 365 473 364 473 0.72 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1_Xtn PF16897.5 106 pCP023447_00105 - 861 0.056 13.5 1.6 1 3 1.3 2.2e+03 -1.3 0.1 33 49 278 294 253 348 0.57 C-terminal region of MMR_HSR1 domain MMR_HSR1_Xtn PF16897.5 106 pCP023447_00105 - 861 0.056 13.5 1.6 2 3 0.00053 0.87 9.6 0.0 56 99 462 518 439 524 0.75 C-terminal region of MMR_HSR1 domain MMR_HSR1_Xtn PF16897.5 106 pCP023447_00105 - 861 0.056 13.5 1.6 3 3 0.48 7.8e+02 0.1 0.1 60 100 612 652 609 656 0.86 C-terminal region of MMR_HSR1 domain RBFA PF02033.18 105 pCP023447_00106 - 120 1.7e-13 50.9 0.0 1 1 3.2e-17 1.9e-13 50.7 0.0 2 105 8 110 7 110 0.91 Ribosome-binding factor A CAAP1 PF15335.6 63 pCP023447_00106 - 120 0.027 15.0 0.5 1 2 0.32 1.9e+03 -0.5 0.0 30 43 1 14 1 16 0.71 Caspase activity and apoptosis inhibitor 1 CAAP1 PF15335.6 63 pCP023447_00106 - 120 0.027 15.0 0.5 2 2 2.1e-05 0.13 12.9 0.3 24 52 12 40 8 43 0.89 Caspase activity and apoptosis inhibitor 1 PRANC PF09372.10 97 pCP023447_00106 - 120 0.079 13.3 0.5 1 2 0.072 4.3e+02 1.3 0.1 83 96 22 35 12 36 0.84 PRANC domain PRANC PF09372.10 97 pCP023447_00106 - 120 0.079 13.3 0.5 2 2 0.00015 0.89 9.9 0.0 36 77 50 91 37 92 0.86 PRANC domain DUF150 PF02576.17 73 pCP023447_00107 - 140 3.4e-25 88.2 0.4 1 2 3.7e-28 1.7e-24 86.0 0.1 2 73 3 74 2 74 0.98 RimP N-terminal domain DUF150 PF02576.17 73 pCP023447_00107 - 140 3.4e-25 88.2 0.4 2 2 0.19 8.3e+02 0.5 0.1 12 43 89 119 79 127 0.65 RimP N-terminal domain DUF150_C PF17384.2 70 pCP023447_00107 - 140 2.4e-18 66.0 2.9 1 1 7.7e-22 3.5e-18 65.5 2.9 1 70 77 140 77 140 0.95 RimP C-terminal SH3 domain LolA_like PF17131.4 183 pCP023447_00107 - 140 0.02 14.6 0.6 1 1 7.5e-06 0.034 13.9 0.6 116 166 79 132 75 138 0.83 Outer membrane lipoprotein-sorting protein LSM14 PF12701.7 75 pCP023447_00107 - 140 0.036 14.2 0.1 1 1 1.3e-05 0.058 13.5 0.1 2 36 86 118 85 136 0.90 Scd6-like Sm domain AAA_5 PF07728.14 138 pCP023447_00108 - 773 3.8e-12 46.4 0.0 1 2 0.015 45 4.0 0.0 3 14 328 339 326 393 0.82 AAA domain (dynein-related subfamily) AAA_5 PF07728.14 138 pCP023447_00108 - 773 3.8e-12 46.4 0.0 2 2 2e-13 5.9e-10 39.3 0.0 59 138 558 642 538 642 0.82 AAA domain (dynein-related subfamily) AAA PF00004.29 132 pCP023447_00108 - 773 3e-05 24.4 0.0 1 2 0.00077 2.3 8.7 0.0 2 13 328 339 327 386 0.82 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP023447_00108 - 773 3e-05 24.4 0.0 2 2 3.6e-05 0.11 13.0 0.1 41 127 547 645 503 650 0.82 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 146 pCP023447_00108 - 773 0.049 14.0 0.1 1 1 0.00024 0.71 10.2 0.1 14 47 328 357 317 596 0.55 AAA domain CHASE5 PF17149.4 108 pCP023447_00108 - 773 0.076 12.9 0.7 1 2 0.00064 1.9 8.4 0.1 28 52 1 25 1 46 0.83 Periplasmic sensor domain found in signal transduction proteins CHASE5 PF17149.4 108 pCP023447_00108 - 773 0.076 12.9 0.7 2 2 0.088 2.6e+02 1.5 0.1 6 43 234 271 230 317 0.80 Periplasmic sensor domain found in signal transduction proteins DUF2330 PF10092.9 309 pCP023447_00108 - 773 0.3 10.1 1.7 1 1 0.00022 0.65 9.0 1.1 206 271 173 246 166 261 0.80 Uncharacterized protein conserved in bacteria (DUF2330) AAA_11 PF13086.6 261 pCP023447_00108 - 773 4.5 7.0 5.3 1 3 0.52 1.6e+03 -1.4 1.5 89 122 154 212 99 287 0.41 AAA domain AAA_11 PF13086.6 261 pCP023447_00108 - 773 4.5 7.0 5.3 2 3 0.0031 9.3 5.9 0.1 20 41 327 349 304 364 0.73 AAA domain AAA_11 PF13086.6 261 pCP023447_00108 - 773 4.5 7.0 5.3 3 3 0.058 1.7e+02 1.8 0.0 176 206 357 387 344 394 0.76 AAA domain McrBC PF10117.9 320 pCP023447_00109 - 445 1.9e-108 362.4 13.0 1 1 1.3e-112 2.4e-108 362.1 13.0 1 320 54 399 54 399 0.96 McrBC 5-methylcytosine restriction system component ABC-3 PF00950.17 258 pCP023447_00110 - 267 6.2e-72 242.2 35.7 1 1 7.8e-76 7e-72 242.0 35.7 2 256 7 261 6 263 0.99 ABC 3 transport family FecCD PF01032.18 312 pCP023447_00110 - 267 4.2e-10 39.1 35.4 1 1 8.3e-14 7.4e-10 38.3 35.4 67 291 32 245 7 263 0.79 FecCD transport family ABC_tran PF00005.27 137 pCP023447_00111 - 284 1.3e-28 100.2 0.1 1 2 4e-31 3.5e-28 98.8 0.0 1 137 19 159 19 159 0.92 ABC transporter ABC_tran PF00005.27 137 pCP023447_00111 - 284 1.3e-28 100.2 0.1 2 2 3.3 2.9e+03 -1.3 0.0 24 28 218 222 169 273 0.58 ABC transporter AAA_21 PF13304.6 303 pCP023447_00111 - 284 3.4e-09 37.0 0.7 1 2 3.1e-07 0.00028 20.8 0.1 3 29 33 58 31 82 0.74 AAA domain, putative AbiEii toxin, Type IV TA system AAA_21 PF13304.6 303 pCP023447_00111 - 284 3.4e-09 37.0 0.7 2 2 2.4e-05 0.021 14.6 0.0 234 301 128 192 125 195 0.92 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 220 pCP023447_00111 - 284 4.9e-07 29.4 1.0 1 2 2.2e-06 0.002 17.6 0.0 24 62 29 67 17 86 0.80 RecF/RecN/SMC N terminal domain SMC_N PF02463.19 220 pCP023447_00111 - 284 4.9e-07 29.4 1.0 2 2 0.0004 0.36 10.2 0.1 134 202 128 193 104 208 0.78 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 61 pCP023447_00111 - 284 0.00018 21.2 0.0 1 1 3.8e-07 0.00034 20.3 0.0 16 54 23 61 12 64 0.82 P-loop containing region of AAA domain AAA_22 PF13401.6 137 pCP023447_00111 - 284 0.00034 20.9 0.1 1 1 1.5e-06 0.0014 18.9 0.1 4 127 28 185 25 204 0.56 AAA domain ATPase_2 PF01637.18 233 pCP023447_00111 - 284 0.00057 19.9 1.5 1 1 6.3e-06 0.0057 16.6 1.5 17 83 26 142 14 223 0.57 ATPase domain predominantly from Archaea AAA_15 PF13175.6 369 pCP023447_00111 - 284 0.0027 17.5 14.7 1 1 9e-06 0.0081 15.9 14.7 15 167 20 274 15 282 0.75 AAA ATPase domain AAA_27 PF13514.6 207 pCP023447_00111 - 284 0.0049 16.5 0.0 1 1 1.1e-05 0.0098 15.5 0.0 18 50 21 53 15 59 0.89 AAA domain SbcCD_C PF13558.6 90 pCP023447_00111 - 284 0.0056 16.9 0.1 1 1 0.00014 0.13 12.6 0.1 21 88 119 173 102 175 0.75 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 pCP023447_00111 - 284 0.011 15.5 0.0 1 1 0.00011 0.099 12.3 0.0 19 121 30 185 22 189 0.57 AAA domain AAA_23 PF13476.6 200 pCP023447_00111 - 284 0.013 16.0 6.6 1 1 8.5e-05 0.076 13.5 6.6 14 40 21 50 5 283 0.90 AAA domain RsgA_GTPase PF03193.16 167 pCP023447_00111 - 284 0.027 14.4 0.0 1 1 7.8e-05 0.07 13.0 0.0 98 123 27 53 6 70 0.77 RsgA GTPase AAA_16 PF13191.6 170 pCP023447_00111 - 284 0.027 14.8 0.0 1 1 4.8e-05 0.043 14.2 0.0 27 57 32 65 23 176 0.84 AAA ATPase domain AAA PF00004.29 132 pCP023447_00111 - 284 0.033 14.6 0.3 1 1 0.00014 0.13 12.7 0.3 3 26 34 86 32 187 0.65 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 168 pCP023447_00111 - 284 0.043 13.7 0.0 1 1 0.0001 0.093 12.6 0.0 4 27 34 57 31 62 0.91 NTPase AAA_14 PF13173.6 131 pCP023447_00111 - 284 0.044 13.8 0.2 1 1 0.00023 0.2 11.7 0.1 3 43 30 69 28 232 0.86 AAA domain IstB_IS21 PF01695.17 178 pCP023447_00111 - 284 0.062 13.0 0.0 1 2 0.012 11 5.7 0.0 45 64 27 46 11 64 0.84 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP023447_00111 - 284 0.062 13.0 0.0 2 2 0.019 17 5.1 0.0 107 141 147 180 126 190 0.80 IstB-like ATP binding protein NACHT PF05729.12 166 pCP023447_00111 - 284 0.084 12.8 0.1 1 2 0.00031 0.28 11.1 0.0 3 31 32 60 30 94 0.80 NACHT domain NACHT PF05729.12 166 pCP023447_00111 - 284 0.084 12.8 0.1 2 2 2.2 2e+03 -1.4 0.0 86 115 153 179 128 192 0.59 NACHT domain MMR_HSR1 PF01926.23 114 pCP023447_00111 - 284 0.12 12.5 0.1 1 2 0.00033 0.3 11.2 0.0 3 29 33 59 31 120 0.79 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 pCP023447_00111 - 284 0.12 12.5 0.1 2 2 6.7 6e+03 -2.7 0.0 79 96 184 206 150 224 0.57 50S ribosome-binding GTPase AAA_33 PF13671.6 143 pCP023447_00111 - 284 0.15 12.2 0.1 1 2 0.00061 0.54 10.4 0.0 4 20 34 50 32 168 0.81 AAA domain AAA_33 PF13671.6 143 pCP023447_00111 - 284 0.15 12.2 0.1 2 2 5.1 4.6e+03 -2.3 0.0 96 109 234 247 198 266 0.60 AAA domain ZnuA PF01297.17 256 pCP023447_00112 - 296 1.5e-55 188.4 3.1 1 1 2e-59 1.8e-55 188.1 3.1 1 229 34 276 34 291 0.86 Zinc-uptake complex component A periplasmic NMT1_3 PF16868.5 289 pCP023447_00112 - 296 0.12 11.8 0.0 1 1 2.1e-05 0.19 11.1 0.0 148 190 233 275 191 292 0.90 NMT1-like family W2 PF02020.18 79 pCP023544_00001 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pCP023544_00001 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pCP023544_00001 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 pCP023544_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCP023544_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pCP023544_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP023544_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pCP023544_00003 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCP023544_00003 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 pCP023544_00004 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP023544_00004 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP023544_00004 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pCP023544_00004 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pCP023544_00004 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pCP023544_00004 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP023544_00004 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP023544_00004 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP023544_00004 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 pCP023544_00005 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP023544_00005 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP023544_00005 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP023544_00005 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP023544_00005 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP023544_00005 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pCP023544_00006 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP023544_00006 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pCP023544_00007 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP023544_00007 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP023544_00007 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP023544_00007 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP023544_00007 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP023544_00007 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pCP023544_00008 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 pCP023544_00008 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal SNF2_N PF00176.23 350 pCP023544_00009 - 1931 3.7e-16 58.8 2.9 1 3 1.3e-19 4.5e-16 58.5 0.1 57 245 1017 1272 935 1313 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP023544_00009 - 1931 3.7e-16 58.8 2.9 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP023544_00009 - 1931 3.7e-16 58.8 2.9 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1875 1923 1845 1924 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP023544_00009 - 1931 7.5e-08 32.6 8.9 1 2 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP023544_00009 - 1931 7.5e-08 32.6 8.9 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1798 1909 1724 1931 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP023544_00009 - 1931 9.7e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP023544_00009 - 1931 9.7e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP023544_00009 - 1931 9.5e-06 25.5 2.0 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP023544_00009 - 1931 9.5e-06 25.5 2.0 2 2 0.12 4.2e+02 0.6 0.0 119 150 1882 1915 1827 1930 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP023544_00009 - 1931 2.5e-05 24.7 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP023544_00009 - 1931 2.5e-05 24.7 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 pCP023544_00010 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 pCP023544_00010 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 pCP023544_00010 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 pCP023544_00010 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) Acetyltransf_7 PF13508.7 76 pCP023544_00011 - 166 0.00015 22.1 0.0 1 1 1e-07 0.00031 21.1 0.0 29 75 12 75 2 76 0.60 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pCP023544_00011 - 166 0.003 17.8 0.0 1 1 2.5e-06 0.0073 16.5 0.0 65 92 14 41 6 74 0.80 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 pCP023544_00011 - 166 0.0052 16.8 0.3 1 1 2.7e-06 0.0082 16.2 0.3 24 67 103 146 86 150 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PHM7_cyt PF14703.6 176 pCP023544_00011 - 166 0.095 12.9 0.2 1 1 5.2e-05 0.15 12.2 0.2 30 85 98 153 86 159 0.81 Cytosolic domain of 10TM putative phosphate transporter Acetyltransf_10 PF13673.7 127 pCP023544_00011 - 166 0.12 12.4 0.0 1 1 0.00011 0.33 10.9 0.0 55 84 13 42 4 84 0.79 Acetyltransferase (GNAT) domain Spc24 PF08286.11 105 pCP023544_00011 - 166 0.39 11.0 3.2 1 2 0.00045 1.3 9.3 0.2 54 89 63 108 31 115 0.67 Spc24 subunit of Ndc80 Spc24 PF08286.11 105 pCP023544_00011 - 166 0.39 11.0 3.2 2 2 0.04 1.2e+02 3.0 0.7 12 43 111 142 101 152 0.69 Spc24 subunit of Ndc80 DUF3913 PF13052.6 57 pCP023544_00012 - 82 0.046 14.0 0.3 1 1 4.2e-06 0.076 13.3 0.2 29 53 35 58 28 62 0.76 Protein of unknown function (DUF3913) Relaxase PF03432.14 242 pCP023544_00013 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP023544_00013 - 462 4.7e-10 39.5 7.4 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pCP023544_00014 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP023544_00014 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP023544_00014 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP023544_00014 - 183 0.046 13.8 2.1 1 1 1.7e-05 0.063 13.4 1.5 55 131 19 103 9 124 0.70 Stage III sporulation protein AB (spore_III_AB) NLRC4_HD PF17889.1 107 pCP023544_00014 - 183 0.18 12.1 5.5 1 2 0.00027 0.98 9.8 1.8 14 92 6 84 3 98 0.81 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP023544_00014 - 183 0.18 12.1 5.5 2 2 0.016 56 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 pCP023544_00014 - 183 0.41 10.7 8.1 1 3 0.32 1.1e+03 -0.3 0.1 40 55 12 27 4 54 0.75 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP023544_00014 - 183 0.41 10.7 8.1 2 3 0.011 39 4.4 0.6 11 46 56 91 51 97 0.87 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP023544_00014 - 183 0.41 10.7 8.1 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pCP023544_00014 - 183 0.42 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP023544_00014 - 183 0.42 10.9 6.2 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE TcdA_TcdB PF12919.7 407 pCP023544_00015 - 93 0.00084 18.7 3.1 1 1 2.1e-07 0.00093 18.6 3.1 272 348 8 80 2 92 0.84 TcdA/TcdB catalytic glycosyltransferase domain Bcl-2 PF00452.19 99 pCP023544_00015 - 93 0.16 12.6 0.3 1 2 0.00017 0.77 10.5 0.1 3 47 6 48 5 49 0.87 Apoptosis regulator proteins, Bcl-2 family Bcl-2 PF00452.19 99 pCP023544_00015 - 93 0.16 12.6 0.3 2 2 0.1 4.6e+02 1.6 0.0 7 31 46 69 45 81 0.73 Apoptosis regulator proteins, Bcl-2 family ESP PF16590.5 91 pCP023544_00015 - 93 0.55 10.5 4.8 1 2 0.017 75 3.7 1.1 26 72 3 52 2 57 0.60 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP023544_00015 - 93 0.55 10.5 4.8 2 2 6e-05 0.27 11.5 0.5 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF3671 PF12420.8 115 pCP023544_00015 - 93 6.5 6.9 13.7 1 2 0.042 1.9e+02 2.2 3.5 25 49 18 42 3 47 0.70 Protein of unknown function DUF3671 PF12420.8 115 pCP023544_00015 - 93 6.5 6.9 13.7 2 2 9.4e-05 0.42 10.7 2.6 4 32 59 85 56 93 0.81 Protein of unknown function Toprim_3 PF13362.6 95 pCP023544_00018 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pCP023544_00018 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pCP023544_00018 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pCP023544_00018 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP023544_00018 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pCP023544_00019 - 97 0.007 16.3 0.0 1 1 1.7e-06 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) nec1 PF10379.9 184 pCP023544_00019 - 97 0.067 12.7 0.0 1 1 1.1e-05 0.099 12.1 0.0 65 105 56 94 35 96 0.75 Virulence protein nec1 Sdh_cyt PF01127.22 121 pCP023544_00020 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 pCP023544_00020 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 pCP023544_00020 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pCP023544_00022 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pCP023544_00023 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pCP023544_00024 - 597 1.1e-14 54.5 0.0 1 1 1e-17 2.3e-14 53.4 0.0 30 193 30 175 19 176 0.85 AAA domain DnaB_C PF03796.15 255 pCP023544_00024 - 597 0.00029 20.3 0.0 1 2 8.3e-07 0.0019 17.6 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP023544_00024 - 597 0.00029 20.3 0.0 2 2 0.012 27 4.0 0.0 121 183 112 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP023544_00024 - 597 0.0018 18.0 0.0 1 2 6.3e-06 0.014 15.1 0.0 46 87 32 73 21 96 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP023544_00024 - 597 0.0018 18.0 0.0 2 2 0.42 9.3e+02 -0.6 0.0 99 118 111 130 102 168 0.69 IstB-like ATP binding protein ATPase PF06745.13 231 pCP023544_00024 - 597 0.0084 15.5 0.0 1 2 2.4e-05 0.053 12.9 0.0 16 70 30 83 24 167 0.92 KaiC ATPase PF06745.13 231 pCP023544_00024 - 597 0.0084 15.5 0.0 2 2 0.72 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pCP023544_00024 - 597 0.014 15.8 0.2 1 2 0.00015 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP023544_00024 - 597 0.014 15.8 0.2 2 2 0.2 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pCP023544_00024 - 597 0.15 12.1 1.7 1 1 0.00034 0.77 9.8 1.7 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pCP023544_00024 - 597 0.38 10.7 3.0 1 3 0.0021 4.7 7.2 0.0 10 35 57 82 53 103 0.92 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP023544_00024 - 597 0.38 10.7 3.0 2 3 0.2 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP023544_00024 - 597 0.38 10.7 3.0 3 3 0.72 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) VASP_tetra PF08776.11 37 pCP023544_00024 - 597 2.7 7.6 6.7 1 2 0.0021 4.7 6.9 0.1 16 36 97 117 94 118 0.91 VASP tetramerisation domain VASP_tetra PF08776.11 37 pCP023544_00024 - 597 2.7 7.6 6.7 2 2 0.087 2e+02 1.7 2.6 16 28 517 529 511 530 0.91 VASP tetramerisation domain Resolvase PF00239.21 146 pCP023544_00025 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP023544_00025 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP023544_00025 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP023544_00025 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pCP023544_00025 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP023544_00025 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pCP023544_00025 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain CRISPR_Cas2 PF09827.9 76 pCP023544_00026 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP023544_00026 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 TrbC PF04956.13 99 pCP023544_00028 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP023544_00028 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pCP023544_00029 - 922 3.1e-51 174.4 0.4 1 1 7.9e-55 7.1e-51 173.2 0.4 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP023544_00029 - 922 3.6e-21 75.2 0.8 1 1 6.9e-25 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein Phage_pRha PF09669.10 88 pCP023544_00030 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 pCP023544_00030 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 pCP023544_00030 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) PBECR2 PF18810.1 119 pCP023544_00031 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 SSB PF00436.25 104 pCP023544_00032 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pCP023544_00033 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP023544_00033 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP023544_00033 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP023544_00033 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP023544_00033 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP023544_00033 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP023544_00033 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pCP023544_00034 - 329 1.7e-28 100.4 13.1 1 1 5.2e-32 2.3e-28 99.9 13.1 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP023544_00034 - 329 0.0035 17.5 0.5 1 2 0.27 1.2e+03 -0.3 0.0 30 54 134 158 120 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP023544_00034 - 329 0.0035 17.5 0.5 2 2 4.7e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 pCP023544_00034 - 329 0.018 15.7 0.8 1 2 1.3 6e+03 -2.1 0.0 55 70 124 139 101 163 0.57 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP023544_00034 - 329 0.018 15.7 0.8 2 2 8.6e-06 0.039 14.6 0.2 31 84 208 270 197 295 0.83 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 pCP023544_00034 - 329 0.48 11.1 11.5 1 2 0.042 1.9e+02 2.7 0.8 49 135 108 145 95 182 0.47 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP023544_00034 - 329 0.48 11.1 11.5 2 2 8.9e-05 0.4 11.4 4.6 49 117 225 307 205 328 0.69 Apoptosis antagonizing transcription factor TrbL PF04610.14 215 pCP023544_00035 - 331 2.1e-30 106.1 33.3 1 2 4.7e-34 2.1e-30 106.1 33.3 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP023544_00035 - 331 2.1e-30 106.1 33.3 2 2 0.59 2.6e+03 -2.1 0.1 58 88 289 325 260 330 0.47 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP023544_00035 - 331 0.069 13.0 1.0 1 2 0.54 2.4e+03 -1.6 0.1 39 51 70 82 61 114 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP023544_00035 - 331 0.069 13.0 1.0 2 2 5e-05 0.23 11.3 0.1 37 81 243 287 222 298 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 pCP023544_00035 - 331 0.17 11.9 0.0 1 1 6.8e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) AIM3 PF17096.5 88 pCP023544_00035 - 331 0.3 12.1 6.0 1 1 0.00013 0.57 11.1 6.0 9 38 299 328 284 330 0.89 Altered inheritance of mitochondria protein 3 La_HTH_kDCL PF18177.1 90 pCP023544_00036 - 54 0.2 12.0 0.0 1 1 1.2e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain VirB8 PF04335.13 214 pCP023544_00037 - 219 1.6e-52 178.5 0.5 1 1 2e-56 1.8e-52 178.3 0.5 4 214 10 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pCP023544_00037 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pCP023544_00038 - 298 9.6e-56 188.8 1.9 1 1 8.4e-60 1.5e-55 188.2 1.9 2 211 32 273 31 273 0.92 Conjugal transfer protein TrbI PF03743.14 187 pCP023544_00039 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.5e+03 -3.4 0.3 136 154 141 166 120 174 0.53 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pCP023544_00039 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP023544_00039 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease T2SSE PF00437.20 273 pCP023544_00040 - 339 6.9e-55 186.0 0.0 1 1 1.4e-57 8.1e-55 185.8 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP023544_00040 - 339 7.2e-05 23.3 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP023544_00040 - 339 0.00012 21.6 0.0 1 1 3.2e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP023544_00040 - 339 0.00028 20.4 0.0 1 1 9.2e-07 0.00052 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP023544_00040 - 339 0.0014 18.9 0.0 1 1 4.7e-06 0.0026 18.0 0.0 5 56 160 221 155 244 0.72 AAA domain DEAD PF00270.29 176 pCP023544_00040 - 339 0.0014 18.4 0.0 1 1 4.1e-06 0.0023 17.7 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pCP023544_00040 - 339 0.0026 17.5 0.2 1 1 9.7e-06 0.0054 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pCP023544_00040 - 339 0.0035 17.3 0.0 1 1 1.3e-05 0.0073 16.3 0.0 10 45 152 186 141 194 0.74 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP023544_00040 - 339 0.0055 15.7 0.0 1 1 1.4e-05 0.0079 15.1 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP023544_00040 - 339 0.0073 16.2 0.0 1 1 2.3e-05 0.013 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP023544_00040 - 339 0.0088 15.4 0.0 1 1 2.6e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP023544_00040 - 339 0.0091 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 305 0.85 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pCP023544_00040 - 339 0.018 15.1 0.0 1 1 6.4e-05 0.036 14.2 0.0 27 48 164 185 142 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 pCP023544_00040 - 339 0.021 13.8 0.0 1 1 6.2e-05 0.035 13.0 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 pCP023544_00040 - 339 0.023 14.7 0.0 1 1 9.6e-05 0.054 13.5 0.0 5 50 147 186 135 248 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 pCP023544_00040 - 339 0.024 14.4 0.0 1 1 9.2e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 pCP023544_00040 - 339 0.026 14.2 0.0 1 1 9.8e-05 0.055 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pCP023544_00040 - 339 0.031 13.8 0.0 1 1 0.00011 0.061 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 pCP023544_00040 - 339 0.035 14.2 0.1 1 1 0.00019 0.11 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 pCP023544_00040 - 339 0.04 13.7 0.0 1 1 0.00011 0.064 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 pCP023544_00040 - 339 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 pCP023544_00040 - 339 0.046 13.0 0.0 1 1 0.00015 0.082 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin PRK PF00485.18 197 pCP023544_00040 - 339 0.058 13.1 0.0 1 1 0.0002 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP023544_00040 - 339 0.065 11.9 0.0 1 1 0.00016 0.092 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP023544_00040 - 339 0.075 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pCP023544_00040 - 339 0.089 12.7 0.0 1 1 0.00036 0.2 11.5 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pCP023544_00040 - 339 0.089 12.7 0.4 1 1 0.00039 0.22 11.5 0.3 71 102 149 179 129 220 0.81 Microtubule binding NTPase_1 PF03266.15 168 pCP023544_00040 - 339 0.11 12.4 0.1 1 1 0.00042 0.23 11.3 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 pCP023544_00040 - 339 0.12 13.0 0.0 1 2 8.1 4.6e+03 -1.9 0.0 25 60 14 49 4 61 0.76 AAA domain AAA_18 PF13238.6 130 pCP023544_00040 - 339 0.12 13.0 0.0 2 2 0.0007 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 pCP023544_00040 - 339 0.15 11.7 0.0 1 1 0.00043 0.24 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP023544_00040 - 339 0.15 11.7 0.0 1 1 0.00044 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pCP023544_00040 - 339 0.38 11.2 4.1 1 2 2.7 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 pCP023544_00040 - 339 0.38 11.2 4.1 2 2 0.00068 0.38 11.2 1.3 22 37 163 178 160 184 0.87 AAA domain Carbam_trans_N PF02543.15 338 pCP023544_00041 - 267 0.053 13.2 0.0 1 1 4.1e-06 0.073 12.7 0.0 195 313 117 236 74 243 0.86 Carbamoyltransferase N-terminus T4SS-DNA_transf PF02534.14 469 pCP023544_00042 - 603 8.3e-104 348.0 0.1 1 1 3.2e-107 1.1e-103 347.5 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP023544_00042 - 603 3.5e-24 85.2 0.0 1 1 1.9e-27 6.8e-24 84.3 0.0 2 125 406 528 405 529 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP023544_00042 - 603 3.2e-15 55.9 0.0 1 2 2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP023544_00042 - 603 3.2e-15 55.9 0.0 2 2 1.6e-13 5.8e-10 38.6 0.0 187 369 347 531 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 pCP023544_00042 - 603 0.17 11.9 0.1 1 1 8.3e-05 0.3 11.2 0.1 37 93 9 87 3 100 0.78 Putative Actinobacterial Holin-X, holin superfamily III ECF_trnsprt PF12822.7 172 pCP023544_00042 - 603 1.2 9.2 8.3 1 1 0.00056 2 8.5 8.3 101 168 4 79 1 81 0.85 ECF transporter, substrate-specific component Cag12 PF13117.6 97 pCP023544_00043 - 143 1.4e-16 60.7 0.3 1 1 2.1e-20 1.9e-16 60.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pCP023544_00043 - 143 0.06 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 pCP023544_00044 - 252 4.1e-38 130.8 2.0 1 1 2.9e-42 5.3e-38 130.4 2.0 1 154 25 190 25 192 0.88 TrbM PRELI PF04707.14 157 pCP023544_00045 - 265 0.044 13.6 0.3 1 2 0.26 2.4e+03 -1.8 0.1 107 133 23 45 5 72 0.49 PRELI-like family PRELI PF04707.14 157 pCP023544_00045 - 265 0.044 13.6 0.3 2 2 4.9e-06 0.044 13.6 0.3 96 155 83 147 78 149 0.87 PRELI-like family TACC_C PF05010.14 201 pCP023544_00045 - 265 0.92 9.3 9.3 1 2 0.00027 2.4 7.9 8.2 14 124 2 111 1 135 0.79 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 pCP023544_00045 - 265 0.92 9.3 9.3 2 2 0.035 3.2e+02 1.0 1.1 8 45 100 139 94 148 0.70 Transforming acidic coiled-coil-containing protein (TACC), C-terminal CdhD PF03599.16 386 pCP023544_00046 - 246 0.002 16.9 0.0 1 1 5.3e-07 0.0031 16.3 0.0 269 358 39 127 30 136 0.86 CO dehydrogenase/acetyl-CoA synthase delta subunit Pox_RNA_pol PF03293.14 160 pCP023544_00046 - 246 0.012 15.3 0.9 1 1 4.5e-06 0.027 14.2 0.9 35 158 20 138 7 140 0.83 Poxvirus DNA-directed RNA polymerase, 18 kD subunit Redoxin PF08534.10 147 pCP023544_00046 - 246 0.059 13.1 0.5 1 2 0.079 4.7e+02 0.4 0.0 117 146 49 76 31 77 0.79 Redoxin Redoxin PF08534.10 147 pCP023544_00046 - 246 0.059 13.1 0.5 2 2 7.9e-05 0.47 10.2 0.1 49 76 184 213 178 230 0.79 Redoxin DUF1461 PF07314.11 189 pCP023544_00047 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) Topoisom_bac PF01131.20 413 pCP023544_00048 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP023544_00048 - 730 6.3e-12 45.6 2.6 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP023544_00048 - 730 6.3e-12 45.6 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP023544_00048 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP023544_00048 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP023544_00048 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP023544_00048 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP023544_00048 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP023544_00048 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP023544_00048 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP023544_00048 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP023544_00048 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pCP023544_00048 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pCP023544_00048 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pCP023544_00048 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP023544_00048 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP023544_00048 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP023544_00048 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pCP023544_00048 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pCP023544_00048 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP023544_00048 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pCP023544_00048 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP023544_00048 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP023544_00048 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP023544_00048 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP023544_00048 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP023544_00048 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP023544_00048 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP023544_00048 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP023544_00048 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP023544_00048 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP023544_00048 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP023544_00048 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP023544_00048 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pCP023544_00050 - 233 2.9e-05 24.0 2.2 1 2 0.42 3.8e+03 -2.3 0.0 56 65 49 58 14 83 0.63 PcfJ-like protein PcfJ PF14284.6 144 pCP023544_00050 - 233 2.9e-05 24.0 2.2 2 2 3.2e-09 2.9e-05 24.0 2.2 3 133 90 216 88 226 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP023544_00050 - 233 0.0053 16.7 3.0 1 1 1.6e-06 0.015 15.3 3.0 37 126 71 205 10 215 0.75 Intein splicing domain APH PF01636.23 240 pCP023544_00052 - 306 5.8e-22 78.8 0.0 1 1 2.1e-25 7.5e-22 78.4 0.0 13 230 39 256 27 265 0.75 Phosphotransferase enzyme family RIO1 PF01163.22 188 pCP023544_00052 - 306 2.1e-06 27.5 0.1 1 2 0.00064 2.3 7.8 0.0 47 111 52 117 46 131 0.76 RIO1 family RIO1 PF01163.22 188 pCP023544_00052 - 306 2.1e-06 27.5 0.1 2 2 5.8e-07 0.0021 17.7 0.1 97 154 165 223 149 253 0.81 RIO1 family DUF1679 PF07914.11 414 pCP023544_00052 - 306 0.00034 19.6 0.1 1 2 1 3.7e+03 -3.6 0.0 113 142 60 89 55 92 0.78 Protein of unknown function (DUF1679) DUF1679 PF07914.11 414 pCP023544_00052 - 306 0.00034 19.6 0.1 2 2 1.6e-07 0.00056 18.9 0.0 213 318 134 238 102 253 0.70 Protein of unknown function (DUF1679) Choline_kinase PF01633.20 213 pCP023544_00052 - 306 0.00076 19.1 0.2 1 2 5.9e-07 0.0021 17.7 0.1 21 171 61 218 46 219 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 pCP023544_00052 - 306 0.00076 19.1 0.2 2 2 0.51 1.8e+03 -1.7 0.0 6 25 249 268 247 271 0.89 Choline/ethanolamine kinase EcKinase PF02958.20 294 pCP023544_00052 - 306 0.0095 15.3 0.1 1 1 3.7e-06 0.013 14.8 0.1 189 270 162 243 121 262 0.65 Ecdysteroid kinase GTP_EFTU PF00009.27 194 pCP023544_00053 - 639 5.6e-59 198.9 0.3 1 1 3.9e-62 7.8e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP023544_00053 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP023544_00053 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP023544_00053 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP023544_00053 - 639 2.1e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP023544_00053 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP023544_00053 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP023544_00053 - 639 0.0091 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP023544_00053 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP023544_00053 - 639 0.05 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family CPSF_A PF03178.15 322 pCP023544_00055 - 95 0.034 13.4 0.0 1 1 9.6e-06 0.034 13.4 0.0 248 286 57 94 23 95 0.80 CPSF A subunit region ATPase PF06745.13 231 pCP023544_00055 - 95 0.048 13.0 0.2 1 1 1.4e-05 0.049 13.0 0.2 73 152 7 87 1 94 0.74 KaiC TipAS PF07739.13 117 pCP023544_00055 - 95 0.061 13.9 1.5 1 1 0.00033 1.2 9.7 1.9 27 96 5 80 1 92 0.80 TipAS antibiotic-recognition domain 3HCDH PF00725.22 97 pCP023544_00055 - 95 0.091 13.4 0.2 1 1 3.8e-05 0.14 12.8 0.2 7 65 36 93 33 95 0.91 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DUF4942 PF13708.6 199 pCP023544_00055 - 95 0.15 12.0 0.0 1 1 7.1e-05 0.26 11.3 0.0 22 74 36 87 33 93 0.88 Domain of unknown function (DUF4942) PNP_UDP_1 PF01048.20 234 pCP023544_00056 - 256 7.6e-29 100.6 0.0 1 1 4.8e-33 8.7e-29 100.4 0.0 3 219 34 237 32 255 0.86 Phosphorylase superfamily DUF4111 PF13427.6 103 pCP023544_00057 - 218 3.1e-17 62.6 0.0 1 3 0.56 2.5e+03 -1.3 0.0 60 80 3 23 2 25 0.81 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pCP023544_00057 - 218 3.1e-17 62.6 0.0 2 3 1.5 6.8e+03 -2.7 0.0 8 22 52 66 50 72 0.73 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pCP023544_00057 - 218 3.1e-17 62.6 0.0 3 3 3.9e-20 1.8e-16 60.2 0.0 1 67 148 214 148 217 0.97 Domain of unknown function (DUF4111) Polbeta PF18765.1 93 pCP023544_00057 - 218 8.7e-10 38.6 0.0 1 2 8.5e-13 3.8e-09 36.5 0.0 8 74 22 92 11 97 0.77 Polymerase beta, Nucleotidyltransferase Polbeta PF18765.1 93 pCP023544_00057 - 218 8.7e-10 38.6 0.0 2 2 0.33 1.5e+03 -0.6 0.0 17 42 103 134 98 153 0.72 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 95 pCP023544_00057 - 218 2.4e-06 27.8 0.0 1 1 1e-09 4.5e-06 26.9 0.0 14 76 25 89 11 107 0.76 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 199 pCP023544_00057 - 218 0.00015 21.7 0.0 1 1 4.6e-08 0.00021 21.3 0.0 88 138 21 71 2 84 0.86 Adenylate cyclase NT domain DUF4111 PF13427.6 103 pCP023544_00058 - 55 0.0023 18.0 0.0 1 1 1.5e-07 0.0027 17.9 0.0 69 103 13 47 7 47 0.95 Domain of unknown function (DUF4111) AAA_18 PF13238.6 130 pCP023544_00059 - 181 5.7e-14 52.8 0.0 1 1 1.6e-16 7.6e-14 52.4 0.0 1 124 7 135 7 141 0.86 AAA domain CPT PF07931.12 174 pCP023544_00059 - 181 3e-09 37.0 0.0 1 1 1.2e-11 5.8e-09 36.0 0.0 1 172 4 172 4 174 0.81 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 pCP023544_00059 - 181 6.4e-09 36.1 0.0 1 1 1.9e-11 9.4e-09 35.6 0.0 2 136 7 144 6 146 0.81 AAA domain Zeta_toxin PF06414.12 199 pCP023544_00059 - 181 1.5e-08 34.2 0.0 1 1 7.5e-11 3.6e-08 32.9 0.0 18 162 6 140 2 174 0.78 Zeta toxin AAA PF00004.29 132 pCP023544_00059 - 181 8.7e-06 26.2 0.2 1 2 1.7e-07 8.1e-05 23.1 0.0 2 34 8 41 7 83 0.78 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP023544_00059 - 181 8.7e-06 26.2 0.2 2 2 0.71 3.5e+02 1.6 0.0 104 131 108 135 56 136 0.84 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 163 pCP023544_00059 - 181 0.0001 22.6 0.1 1 2 8.3e-07 0.0004 20.7 0.0 2 62 7 71 6 85 0.62 AAA domain AAA_28 PF13521.6 163 pCP023544_00059 - 181 0.0001 22.6 0.1 2 2 2.6 1.2e+03 -0.4 0.1 137 137 133 133 91 177 0.52 AAA domain AAA_17 PF13207.6 136 pCP023544_00059 - 181 0.0002 21.8 0.0 1 1 7.1e-07 0.00035 21.0 0.0 1 128 10 131 10 139 0.78 AAA domain AAA_22 PF13401.6 137 pCP023544_00059 - 181 0.00034 20.9 0.0 1 2 2e-06 0.00099 19.4 0.0 4 33 3 32 1 84 0.83 AAA domain AAA_22 PF13401.6 137 pCP023544_00059 - 181 0.00034 20.9 0.0 2 2 3.7 1.8e+03 -0.9 0.0 62 83 121 141 96 178 0.64 AAA domain AAA_14 PF13173.6 131 pCP023544_00059 - 181 0.00043 20.3 0.0 1 1 1.4e-06 0.00066 19.7 0.0 2 127 4 141 3 145 0.72 AAA domain RuvB_N PF05496.12 159 pCP023544_00059 - 181 0.0016 18.2 0.1 1 2 1.2e-05 0.0057 16.4 0.0 36 60 7 31 3 49 0.85 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 pCP023544_00059 - 181 0.0016 18.2 0.1 2 2 3.1 1.5e+03 -1.2 0.0 96 114 111 129 104 167 0.72 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 146 pCP023544_00059 - 181 0.0024 18.2 0.0 1 1 8.6e-06 0.0042 17.4 0.0 9 35 3 29 1 77 0.87 AAA domain ABC_tran PF00005.27 137 pCP023544_00059 - 181 0.0031 18.0 0.1 1 1 8.5e-06 0.0041 17.6 0.1 9 43 2 35 1 133 0.85 ABC transporter AAA_16 PF13191.6 170 pCP023544_00059 - 181 0.0045 17.4 0.0 1 1 1.9e-05 0.0092 16.4 0.0 22 62 2 43 1 76 0.75 AAA ATPase domain KTI12 PF08433.10 272 pCP023544_00059 - 181 0.0048 16.4 0.0 1 2 2e-05 0.0095 15.4 0.0 3 42 6 44 5 87 0.74 Chromatin associated protein KTI12 KTI12 PF08433.10 272 pCP023544_00059 - 181 0.0048 16.4 0.0 2 2 4.5 2.2e+03 -2.2 0.0 263 263 137 137 104 174 0.57 Chromatin associated protein KTI12 DUF2075 PF09848.9 363 pCP023544_00059 - 181 0.005 16.1 0.2 1 1 1.6e-05 0.0077 15.5 0.1 2 29 5 32 4 68 0.84 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.20 158 pCP023544_00059 - 181 0.0076 16.2 0.0 1 2 0.00023 0.11 12.3 0.0 1 79 3 84 3 111 0.64 Adenylylsulphate kinase APS_kinase PF01583.20 158 pCP023544_00059 - 181 0.0076 16.2 0.0 2 2 0.37 1.8e+02 1.9 0.0 44 74 118 148 98 155 0.85 Adenylylsulphate kinase AAA_30 PF13604.6 192 pCP023544_00059 - 181 0.0092 15.7 0.1 1 1 3.2e-05 0.016 15.0 0.1 17 40 3 26 1 39 0.82 AAA domain AAA_24 PF13479.6 197 pCP023544_00059 - 181 0.0096 15.7 0.3 1 1 2e-05 0.0097 15.6 0.3 3 23 5 30 3 171 0.85 AAA domain Ploopntkinase1 PF18748.1 196 pCP023544_00059 - 181 0.0099 15.4 0.0 1 2 0.087 42 3.6 0.0 16 41 3 28 1 41 0.82 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 pCP023544_00059 - 181 0.0099 15.4 0.0 2 2 0.00091 0.44 10.0 0.0 93 164 72 143 54 154 0.81 P-loop Nucleotide Kinase1 T2SSE PF00437.20 273 pCP023544_00059 - 181 0.011 14.8 0.0 1 1 3.4e-05 0.016 14.3 0.0 130 158 5 33 1 75 0.82 Type II/IV secretion system protein ATPase PF06745.13 231 pCP023544_00059 - 181 0.011 15.1 1.2 1 2 3.6e-05 0.017 14.5 0.1 18 37 3 22 1 35 0.87 KaiC ATPase PF06745.13 231 pCP023544_00059 - 181 0.011 15.1 1.2 2 2 2.3 1.1e+03 -1.3 0.1 98 129 123 159 100 175 0.49 KaiC Rad17 PF03215.15 186 pCP023544_00059 - 181 0.012 15.5 0.0 1 2 8.1e-05 0.039 13.9 0.0 45 71 4 30 1 40 0.88 Rad17 P-loop domain Rad17 PF03215.15 186 pCP023544_00059 - 181 0.012 15.5 0.0 2 2 3.2 1.5e+03 -1.1 0.0 113 146 110 145 96 169 0.62 Rad17 P-loop domain SRP54 PF00448.22 196 pCP023544_00059 - 181 0.016 14.8 0.1 1 1 6.3e-05 0.031 13.9 0.1 3 40 6 42 4 49 0.84 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 168 pCP023544_00059 - 181 0.021 14.7 1.0 1 2 0.0001 0.049 13.5 0.3 2 22 7 27 6 35 0.85 NTPase NTPase_1 PF03266.15 168 pCP023544_00059 - 181 0.021 14.7 1.0 2 2 2.1 1e+03 -0.5 0.0 115 136 97 118 58 172 0.59 NTPase dNK PF01712.19 204 pCP023544_00059 - 181 0.034 14.0 0.2 1 2 0.0019 0.94 9.3 0.0 1 52 7 75 7 77 0.66 Deoxynucleoside kinase dNK PF01712.19 204 pCP023544_00059 - 181 0.034 14.0 0.2 2 2 0.19 94 2.8 0.2 118 162 102 143 92 175 0.70 Deoxynucleoside kinase Sigma54_activat PF00158.26 168 pCP023544_00059 - 181 0.035 13.8 0.0 1 1 0.00014 0.066 12.9 0.0 25 68 7 57 1 89 0.76 Sigma-54 interaction domain TIP49 PF06068.13 351 pCP023544_00059 - 181 0.035 13.3 0.2 1 2 0.00023 0.11 11.6 0.0 50 77 4 31 1 46 0.84 TIP49 P-loop domain TIP49 PF06068.13 351 pCP023544_00059 - 181 0.035 13.3 0.2 2 2 1.4 7e+02 -0.8 0.1 148 178 126 156 105 172 0.75 TIP49 P-loop domain ATPase_2 PF01637.18 233 pCP023544_00059 - 181 0.039 13.8 0.3 1 2 0.0045 2.2 8.2 0.0 19 49 3 32 1 50 0.75 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pCP023544_00059 - 181 0.039 13.8 0.3 2 2 0.085 41 4.0 0.1 48 97 102 150 92 179 0.53 ATPase domain predominantly from Archaea DnaB_C PF03796.15 255 pCP023544_00059 - 181 0.06 12.7 0.4 1 2 0.00026 0.13 11.6 0.0 17 47 2 32 1 42 0.83 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP023544_00059 - 181 0.06 12.7 0.4 2 2 2.6 1.3e+03 -1.5 0.1 84 91 136 143 98 179 0.39 DnaB-like helicase C terminal domain MKT1_N PF12247.8 90 pCP023544_00059 - 181 0.069 13.5 0.0 1 1 0.00057 0.28 11.6 0.0 14 51 39 74 36 147 0.88 Temperature dependent protein affecting M2 dsRNA replication AAA_11 PF13086.6 261 pCP023544_00059 - 181 0.073 12.8 1.5 1 1 0.00025 0.12 12.1 1.5 16 42 3 29 1 179 0.85 AAA domain PhoH PF02562.16 205 pCP023544_00059 - 181 0.076 12.5 0.1 1 1 0.0003 0.14 11.5 0.1 18 49 3 34 1 36 0.84 PhoH-like protein RNA_helicase PF00910.22 107 pCP023544_00059 - 181 0.089 13.2 0.0 1 1 0.00032 0.16 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase NACHT PF05729.12 166 pCP023544_00059 - 181 0.1 12.5 0.0 1 1 0.00036 0.17 11.8 0.0 1 40 5 45 5 73 0.78 NACHT domain ATP-synt_ab PF00006.25 213 pCP023544_00059 - 181 0.14 11.8 0.0 1 1 0.00028 0.14 11.8 0.0 13 45 3 34 1 178 0.82 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 181 pCP023544_00059 - 181 0.18 11.3 0.7 1 2 0.00058 0.28 10.7 0.1 31 63 2 34 1 46 0.80 P-loop containing dynein motor region AAA_7 PF12775.7 181 pCP023544_00059 - 181 0.18 11.3 0.7 2 2 8.9 4.3e+03 -3.0 0.0 65 82 156 173 132 176 0.64 P-loop containing dynein motor region Cytidylate_kin2 PF13189.6 179 pCP023544_00059 - 181 0.2 11.8 1.5 1 2 0.038 19 5.4 0.1 1 23 6 28 6 36 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 pCP023544_00059 - 181 0.2 11.8 1.5 2 2 0.026 12 5.9 0.1 108 147 99 138 28 143 0.73 Cytidylate kinase-like family APH PF01636.23 240 pCP023544_00060 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pCP023544_00060 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pCP023544_00060 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pCP023544_00060 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pCP023544_00060 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pCP023544_00060 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 pCP023544_00061 - 139 2.2e-51 174.9 0.1 1 1 1.4e-55 2.4e-51 174.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase Adenyl_transf PF04439.12 279 pCP023544_00062 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 pCP023544_00063 - 180 3.8e-20 72.3 0.1 1 1 2.3e-23 5.3e-20 71.8 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 pCP023544_00063 - 180 1.2e-13 51.2 0.1 1 1 9.1e-17 2e-13 50.5 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 pCP023544_00063 - 180 2.7e-12 46.7 0.0 1 1 1.6e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 pCP023544_00063 - 180 1.1e-09 38.6 1.1 1 1 6e-13 1.3e-09 38.3 1.1 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 pCP023544_00063 - 180 0.0011 19.7 0.0 1 1 6.1e-07 0.0014 19.4 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 pCP023544_00063 - 180 0.0011 19.0 0.0 1 1 1.2e-06 0.0027 17.8 0.0 6 58 79 130 73 132 0.85 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 pCP023544_00063 - 180 0.015 15.4 0.0 1 1 2.6e-05 0.059 13.5 0.0 21 126 50 154 43 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 pCP023544_00063 - 180 0.038 14.0 0.0 1 1 2.9e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein APH PF01636.23 240 pCP023544_00064 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pCP023544_00064 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pCP023544_00064 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pCP023544_00064 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family zf-HC2 PF13490.6 35 pCP023544_00065 - 221 3.2e-06 27.3 2.7 1 1 1.2e-09 6.9e-06 26.2 2.7 4 35 11 42 9 42 0.97 Putative zinc-finger Glyco_hydro_100 PF12899.7 435 pCP023544_00065 - 221 0.11 11.1 0.0 1 2 5.6e-05 0.34 9.5 0.0 29 75 3 50 1 72 0.86 Alkaline and neutral invertase Glyco_hydro_100 PF12899.7 435 pCP023544_00065 - 221 0.11 11.1 0.0 2 2 0.094 5.6e+02 -1.1 0.0 265 319 107 163 99 169 0.82 Alkaline and neutral invertase TetR_C_11 PF16859.5 113 pCP023544_00065 - 221 0.15 12.4 0.7 1 1 3.5e-05 0.21 11.9 0.7 12 111 12 110 11 112 0.88 Tetracyclin repressor-like, C-terminal domain Sigma70_r4_2 PF08281.12 54 pCP023544_00066 - 150 2.5e-07 30.3 0.0 1 1 6.3e-11 3.8e-07 29.7 0.0 1 54 87 140 87 140 0.97 Sigma-70, region 4 Sigma70_r4 PF04545.16 50 pCP023544_00066 - 150 3.8e-06 26.3 0.0 1 1 1.1e-09 6.3e-06 25.6 0.0 1 48 93 140 93 142 0.93 Sigma-70, region 4 HTH_38 PF13936.6 44 pCP023544_00066 - 150 0.021 14.6 0.0 1 1 6.9e-06 0.041 13.6 0.0 3 33 95 125 93 126 0.92 Helix-turn-helix domain Resolvase PF00239.21 146 pCP023546_00001 - 128 3e-12 46.9 0.0 1 1 5e-16 4.5e-12 46.3 0.0 82 146 3 69 1 69 0.94 Resolvase, N terminal domain HTH_38 PF13936.6 44 pCP023546_00001 - 128 0.011 15.5 0.1 1 2 0.00053 4.7 7.0 0.0 2 35 41 75 41 78 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pCP023546_00001 - 128 0.011 15.5 0.1 2 2 0.0009 8.1 6.3 0.0 11 26 86 101 82 105 0.88 Helix-turn-helix domain AAA_25 PF13481.6 194 pCP023546_00002 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pCP023546_00002 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP023546_00002 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pCP023546_00002 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pCP023546_00002 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pCP023546_00002 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 pCP023546_00002 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pCP023546_00002 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP023546_00002 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pCP023546_00002 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pCP023546_00002 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP023546_00002 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pCP023546_00002 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) HicA_toxin PF07927.12 58 pCP023546_00003 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pCP023546_00004 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 pCP023546_00006 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 pCP023546_00006 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 pCP023546_00006 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) DUF4223 PF13978.6 54 pCP023546_00007 - 97 0.007 16.3 0.0 1 1 1.7e-06 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) nec1 PF10379.9 184 pCP023546_00007 - 97 0.067 12.7 0.0 1 1 1.1e-05 0.099 12.1 0.0 65 105 56 94 35 96 0.75 Virulence protein nec1 Toprim_3 PF13362.6 95 pCP023546_00008 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pCP023546_00008 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pCP023546_00008 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pCP023546_00008 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pCP023546_00008 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold Sds3 PF08598.11 218 pCP023546_00011 - 93 0.041 13.9 5.7 1 1 8e-06 0.048 13.7 5.7 45 97 7 62 5 87 0.82 Sds3-like ESP PF16590.5 91 pCP023546_00011 - 93 0.48 10.7 5.3 1 2 0.036 2.2e+02 2.2 0.8 26 70 3 44 2 49 0.66 Exocrine gland-secreting peptide ESP PF16590.5 91 pCP023546_00011 - 93 0.48 10.7 5.3 2 2 4.4e-05 0.26 11.6 0.5 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF3671 PF12420.8 115 pCP023546_00011 - 93 4.2 7.5 13.8 1 2 0.021 1.3e+02 2.7 3.6 24 49 17 42 3 46 0.72 Protein of unknown function DUF3671 PF12420.8 115 pCP023546_00011 - 93 4.2 7.5 13.8 2 2 7e-05 0.42 10.7 2.6 4 32 59 85 56 93 0.81 Protein of unknown function HTH_46 PF15977.5 68 pCP023546_00012 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP023546_00012 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pCP023546_00012 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pCP023546_00012 - 183 0.046 13.8 2.1 1 1 1.7e-05 0.063 13.4 1.5 55 131 19 103 9 124 0.70 Stage III sporulation protein AB (spore_III_AB) NLRC4_HD PF17889.1 107 pCP023546_00012 - 183 0.18 12.1 5.5 1 2 0.00027 0.98 9.8 1.8 14 92 6 84 3 98 0.81 NLRC4 helical domain NLRC4_HD PF17889.1 107 pCP023546_00012 - 183 0.18 12.1 5.5 2 2 0.016 56 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 pCP023546_00012 - 183 0.41 10.7 8.1 1 3 0.32 1.1e+03 -0.3 0.1 40 55 12 27 4 54 0.75 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP023546_00012 - 183 0.41 10.7 8.1 2 3 0.011 39 4.4 0.6 11 46 56 91 51 97 0.87 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pCP023546_00012 - 183 0.41 10.7 8.1 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pCP023546_00012 - 183 0.42 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pCP023546_00012 - 183 0.42 10.9 6.2 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Relaxase PF03432.14 242 pCP023546_00013 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pCP023546_00013 - 462 4.7e-10 39.5 7.4 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain DUF3913 PF13052.6 57 pCP023546_00014 - 82 0.046 14.0 0.3 1 1 4.2e-06 0.076 13.3 0.2 29 53 35 58 28 62 0.76 Protein of unknown function (DUF3913) Acetyltransf_7 PF13508.7 76 pCP023546_00015 - 166 0.00015 22.1 0.0 1 1 1e-07 0.00031 21.1 0.0 29 75 12 75 2 76 0.60 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pCP023546_00015 - 166 0.003 17.8 0.0 1 1 2.5e-06 0.0073 16.5 0.0 65 92 14 41 6 74 0.80 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 pCP023546_00015 - 166 0.0052 16.8 0.3 1 1 2.7e-06 0.0082 16.2 0.3 24 67 103 146 86 150 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PHM7_cyt PF14703.6 176 pCP023546_00015 - 166 0.095 12.9 0.2 1 1 5.2e-05 0.15 12.2 0.2 30 85 98 153 86 159 0.81 Cytosolic domain of 10TM putative phosphate transporter Acetyltransf_10 PF13673.7 127 pCP023546_00015 - 166 0.12 12.4 0.0 1 1 0.00011 0.33 10.9 0.0 55 84 13 42 4 84 0.79 Acetyltransferase (GNAT) domain Spc24 PF08286.11 105 pCP023546_00015 - 166 0.39 11.0 3.2 1 2 0.00045 1.3 9.3 0.2 54 89 63 108 31 115 0.67 Spc24 subunit of Ndc80 Spc24 PF08286.11 105 pCP023546_00015 - 166 0.39 11.0 3.2 2 2 0.04 1.2e+02 3.0 0.7 12 43 111 142 101 152 0.69 Spc24 subunit of Ndc80 NYN PF01936.18 147 pCP023546_00016 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 pCP023546_00016 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 pCP023546_00016 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 pCP023546_00016 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) SNF2_N PF00176.23 350 pCP023546_00017 - 1931 3.7e-16 58.8 2.9 1 3 1.3e-19 4.5e-16 58.5 0.1 57 245 1017 1272 935 1313 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP023546_00017 - 1931 3.7e-16 58.8 2.9 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pCP023546_00017 - 1931 3.7e-16 58.8 2.9 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1875 1923 1845 1924 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pCP023546_00017 - 1931 7.5e-08 32.6 8.9 1 2 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pCP023546_00017 - 1931 7.5e-08 32.6 8.9 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1798 1909 1724 1931 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pCP023546_00017 - 1931 9.7e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pCP023546_00017 - 1931 9.7e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pCP023546_00017 - 1931 9.5e-06 25.5 2.0 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 pCP023546_00017 - 1931 9.5e-06 25.5 2.0 2 2 0.12 4.2e+02 0.6 0.0 119 150 1882 1915 1827 1930 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 pCP023546_00017 - 1931 2.5e-05 24.7 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pCP023546_00017 - 1931 2.5e-05 24.7 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 pCP023546_00018 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 pCP023546_00018 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal AAA_31 PF13614.6 177 pCP023546_00019 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pCP023546_00019 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pCP023546_00019 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pCP023546_00019 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pCP023546_00019 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pCP023546_00019 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pCP023546_00020 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pCP023546_00020 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 pCP023546_00021 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pCP023546_00021 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pCP023546_00021 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pCP023546_00021 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pCP023546_00021 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pCP023546_00021 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 pCP023546_00022 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pCP023546_00022 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pCP023546_00022 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pCP023546_00022 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pCP023546_00022 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pCP023546_00022 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pCP023546_00022 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pCP023546_00022 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pCP023546_00022 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 pCP023546_00023 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pCP023546_00023 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain Lip_prot_lig_C PF10437.9 85 pCP023546_00024 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pCP023546_00024 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pCP023546_00024 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pCP023546_00024 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain W2 PF02020.18 79 pCP023546_00025 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pCP023546_00025 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pCP023546_00025 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Sigma70_r4_2 PF08281.12 54 pCP023546_00026 - 150 2.5e-07 30.3 0.0 1 1 6.3e-11 3.8e-07 29.7 0.0 1 54 87 140 87 140 0.97 Sigma-70, region 4 Sigma70_r4 PF04545.16 50 pCP023546_00026 - 150 3.8e-06 26.3 0.0 1 1 1.1e-09 6.3e-06 25.6 0.0 1 48 93 140 93 142 0.93 Sigma-70, region 4 HTH_38 PF13936.6 44 pCP023546_00026 - 150 0.021 14.6 0.0 1 1 6.9e-06 0.041 13.6 0.0 3 33 95 125 93 126 0.92 Helix-turn-helix domain zf-HC2 PF13490.6 35 pCP023546_00027 - 221 3.2e-06 27.3 2.7 1 1 1.2e-09 6.9e-06 26.2 2.7 4 35 11 42 9 42 0.97 Putative zinc-finger Glyco_hydro_100 PF12899.7 435 pCP023546_00027 - 221 0.11 11.1 0.0 1 2 5.6e-05 0.34 9.5 0.0 29 75 3 50 1 72 0.86 Alkaline and neutral invertase Glyco_hydro_100 PF12899.7 435 pCP023546_00027 - 221 0.11 11.1 0.0 2 2 0.094 5.6e+02 -1.1 0.0 265 319 107 163 99 169 0.82 Alkaline and neutral invertase TetR_C_11 PF16859.5 113 pCP023546_00027 - 221 0.15 12.4 0.7 1 1 3.5e-05 0.21 11.9 0.7 12 111 12 110 11 112 0.88 Tetracyclin repressor-like, C-terminal domain APH PF01636.23 240 pCP023546_00028 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pCP023546_00028 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pCP023546_00028 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pCP023546_00028 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family Acetyltransf_1 PF00583.25 117 pCP023546_00029 - 180 3.8e-20 72.3 0.1 1 1 2.3e-23 5.3e-20 71.8 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 pCP023546_00029 - 180 1.2e-13 51.2 0.1 1 1 9.1e-17 2e-13 50.5 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 pCP023546_00029 - 180 2.7e-12 46.7 0.0 1 1 1.6e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 pCP023546_00029 - 180 1.1e-09 38.6 1.1 1 1 6e-13 1.3e-09 38.3 1.1 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 pCP023546_00029 - 180 0.0011 19.7 0.0 1 1 6.1e-07 0.0014 19.4 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 pCP023546_00029 - 180 0.0011 19.0 0.0 1 1 1.2e-06 0.0027 17.8 0.0 6 58 79 130 73 132 0.85 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 pCP023546_00029 - 180 0.015 15.4 0.0 1 1 2.6e-05 0.059 13.5 0.0 21 126 50 154 43 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 pCP023546_00029 - 180 0.038 14.0 0.0 1 1 2.9e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein Adenyl_transf PF04439.12 279 pCP023546_00030 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Peptidase_C15 PF01470.17 202 pCP023546_00031 - 139 2.2e-51 174.9 0.1 1 1 1.4e-55 2.4e-51 174.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase APH PF01636.23 240 pCP023546_00032 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pCP023546_00032 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pCP023546_00032 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pCP023546_00032 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pCP023546_00032 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pCP023546_00032 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase AAA_18 PF13238.6 130 pCP023546_00033 - 181 5.7e-14 52.8 0.0 1 1 1.6e-16 7.6e-14 52.4 0.0 1 124 7 135 7 141 0.86 AAA domain CPT PF07931.12 174 pCP023546_00033 - 181 3e-09 37.0 0.0 1 1 1.2e-11 5.8e-09 36.0 0.0 1 172 4 172 4 174 0.81 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 pCP023546_00033 - 181 6.4e-09 36.1 0.0 1 1 1.9e-11 9.4e-09 35.6 0.0 2 136 7 144 6 146 0.81 AAA domain Zeta_toxin PF06414.12 199 pCP023546_00033 - 181 1.5e-08 34.2 0.0 1 1 7.5e-11 3.6e-08 32.9 0.0 18 162 6 140 2 174 0.78 Zeta toxin AAA PF00004.29 132 pCP023546_00033 - 181 8.7e-06 26.2 0.2 1 2 1.7e-07 8.1e-05 23.1 0.0 2 34 8 41 7 83 0.78 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pCP023546_00033 - 181 8.7e-06 26.2 0.2 2 2 0.71 3.5e+02 1.6 0.0 104 131 108 135 56 136 0.84 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 163 pCP023546_00033 - 181 0.0001 22.6 0.1 1 2 8.3e-07 0.0004 20.7 0.0 2 62 7 71 6 85 0.62 AAA domain AAA_28 PF13521.6 163 pCP023546_00033 - 181 0.0001 22.6 0.1 2 2 2.6 1.2e+03 -0.4 0.1 137 137 133 133 91 177 0.52 AAA domain AAA_17 PF13207.6 136 pCP023546_00033 - 181 0.0002 21.8 0.0 1 1 7.1e-07 0.00035 21.0 0.0 1 128 10 131 10 139 0.78 AAA domain AAA_22 PF13401.6 137 pCP023546_00033 - 181 0.00034 20.9 0.0 1 2 2e-06 0.00099 19.4 0.0 4 33 3 32 1 84 0.83 AAA domain AAA_22 PF13401.6 137 pCP023546_00033 - 181 0.00034 20.9 0.0 2 2 3.7 1.8e+03 -0.9 0.0 62 83 121 141 96 178 0.64 AAA domain AAA_14 PF13173.6 131 pCP023546_00033 - 181 0.00043 20.3 0.0 1 1 1.4e-06 0.00066 19.7 0.0 2 127 4 141 3 145 0.72 AAA domain RuvB_N PF05496.12 159 pCP023546_00033 - 181 0.0016 18.2 0.1 1 2 1.2e-05 0.0057 16.4 0.0 36 60 7 31 3 49 0.85 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 pCP023546_00033 - 181 0.0016 18.2 0.1 2 2 3.1 1.5e+03 -1.2 0.0 96 114 111 129 104 167 0.72 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 146 pCP023546_00033 - 181 0.0024 18.2 0.0 1 1 8.6e-06 0.0042 17.4 0.0 9 35 3 29 1 77 0.87 AAA domain ABC_tran PF00005.27 137 pCP023546_00033 - 181 0.0031 18.0 0.1 1 1 8.5e-06 0.0041 17.6 0.1 9 43 2 35 1 133 0.85 ABC transporter AAA_16 PF13191.6 170 pCP023546_00033 - 181 0.0045 17.4 0.0 1 1 1.9e-05 0.0092 16.4 0.0 22 62 2 43 1 76 0.75 AAA ATPase domain KTI12 PF08433.10 272 pCP023546_00033 - 181 0.0048 16.4 0.0 1 2 2e-05 0.0095 15.4 0.0 3 42 6 44 5 87 0.74 Chromatin associated protein KTI12 KTI12 PF08433.10 272 pCP023546_00033 - 181 0.0048 16.4 0.0 2 2 4.5 2.2e+03 -2.2 0.0 263 263 137 137 104 174 0.57 Chromatin associated protein KTI12 DUF2075 PF09848.9 363 pCP023546_00033 - 181 0.005 16.1 0.2 1 1 1.6e-05 0.0077 15.5 0.1 2 29 5 32 4 68 0.84 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.20 158 pCP023546_00033 - 181 0.0076 16.2 0.0 1 2 0.00023 0.11 12.3 0.0 1 79 3 84 3 111 0.64 Adenylylsulphate kinase APS_kinase PF01583.20 158 pCP023546_00033 - 181 0.0076 16.2 0.0 2 2 0.37 1.8e+02 1.9 0.0 44 74 118 148 98 155 0.85 Adenylylsulphate kinase AAA_30 PF13604.6 192 pCP023546_00033 - 181 0.0092 15.7 0.1 1 1 3.2e-05 0.016 15.0 0.1 17 40 3 26 1 39 0.82 AAA domain AAA_24 PF13479.6 197 pCP023546_00033 - 181 0.0096 15.7 0.3 1 1 2e-05 0.0097 15.6 0.3 3 23 5 30 3 171 0.85 AAA domain Ploopntkinase1 PF18748.1 196 pCP023546_00033 - 181 0.0099 15.4 0.0 1 2 0.087 42 3.6 0.0 16 41 3 28 1 41 0.82 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 pCP023546_00033 - 181 0.0099 15.4 0.0 2 2 0.00091 0.44 10.0 0.0 93 164 72 143 54 154 0.81 P-loop Nucleotide Kinase1 T2SSE PF00437.20 273 pCP023546_00033 - 181 0.011 14.8 0.0 1 1 3.4e-05 0.016 14.3 0.0 130 158 5 33 1 75 0.82 Type II/IV secretion system protein ATPase PF06745.13 231 pCP023546_00033 - 181 0.011 15.1 1.2 1 2 3.6e-05 0.017 14.5 0.1 18 37 3 22 1 35 0.87 KaiC ATPase PF06745.13 231 pCP023546_00033 - 181 0.011 15.1 1.2 2 2 2.3 1.1e+03 -1.3 0.1 98 129 123 159 100 175 0.49 KaiC Rad17 PF03215.15 186 pCP023546_00033 - 181 0.012 15.5 0.0 1 2 8.1e-05 0.039 13.9 0.0 45 71 4 30 1 40 0.88 Rad17 P-loop domain Rad17 PF03215.15 186 pCP023546_00033 - 181 0.012 15.5 0.0 2 2 3.2 1.5e+03 -1.1 0.0 113 146 110 145 96 169 0.62 Rad17 P-loop domain SRP54 PF00448.22 196 pCP023546_00033 - 181 0.016 14.8 0.1 1 1 6.3e-05 0.031 13.9 0.1 3 40 6 42 4 49 0.84 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 168 pCP023546_00033 - 181 0.021 14.7 1.0 1 2 0.0001 0.049 13.5 0.3 2 22 7 27 6 35 0.85 NTPase NTPase_1 PF03266.15 168 pCP023546_00033 - 181 0.021 14.7 1.0 2 2 2.1 1e+03 -0.5 0.0 115 136 97 118 58 172 0.59 NTPase dNK PF01712.19 204 pCP023546_00033 - 181 0.034 14.0 0.2 1 2 0.0019 0.94 9.3 0.0 1 52 7 75 7 77 0.66 Deoxynucleoside kinase dNK PF01712.19 204 pCP023546_00033 - 181 0.034 14.0 0.2 2 2 0.19 94 2.8 0.2 118 162 102 143 92 175 0.70 Deoxynucleoside kinase Sigma54_activat PF00158.26 168 pCP023546_00033 - 181 0.035 13.8 0.0 1 1 0.00014 0.066 12.9 0.0 25 68 7 57 1 89 0.76 Sigma-54 interaction domain TIP49 PF06068.13 351 pCP023546_00033 - 181 0.035 13.3 0.2 1 2 0.00023 0.11 11.6 0.0 50 77 4 31 1 46 0.84 TIP49 P-loop domain TIP49 PF06068.13 351 pCP023546_00033 - 181 0.035 13.3 0.2 2 2 1.4 7e+02 -0.8 0.1 148 178 126 156 105 172 0.75 TIP49 P-loop domain ATPase_2 PF01637.18 233 pCP023546_00033 - 181 0.039 13.8 0.3 1 2 0.0045 2.2 8.2 0.0 19 49 3 32 1 50 0.75 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pCP023546_00033 - 181 0.039 13.8 0.3 2 2 0.085 41 4.0 0.1 48 97 102 150 92 179 0.53 ATPase domain predominantly from Archaea DnaB_C PF03796.15 255 pCP023546_00033 - 181 0.06 12.7 0.4 1 2 0.00026 0.13 11.6 0.0 17 47 2 32 1 42 0.83 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pCP023546_00033 - 181 0.06 12.7 0.4 2 2 2.6 1.3e+03 -1.5 0.1 84 91 136 143 98 179 0.39 DnaB-like helicase C terminal domain MKT1_N PF12247.8 90 pCP023546_00033 - 181 0.069 13.5 0.0 1 1 0.00057 0.28 11.6 0.0 14 51 39 74 36 147 0.88 Temperature dependent protein affecting M2 dsRNA replication AAA_11 PF13086.6 261 pCP023546_00033 - 181 0.073 12.8 1.5 1 1 0.00025 0.12 12.1 1.5 16 42 3 29 1 179 0.85 AAA domain PhoH PF02562.16 205 pCP023546_00033 - 181 0.076 12.5 0.1 1 1 0.0003 0.14 11.5 0.1 18 49 3 34 1 36 0.84 PhoH-like protein RNA_helicase PF00910.22 107 pCP023546_00033 - 181 0.089 13.2 0.0 1 1 0.00032 0.16 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase NACHT PF05729.12 166 pCP023546_00033 - 181 0.1 12.5 0.0 1 1 0.00036 0.17 11.8 0.0 1 40 5 45 5 73 0.78 NACHT domain ATP-synt_ab PF00006.25 213 pCP023546_00033 - 181 0.14 11.8 0.0 1 1 0.00028 0.14 11.8 0.0 13 45 3 34 1 178 0.82 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 181 pCP023546_00033 - 181 0.18 11.3 0.7 1 2 0.00058 0.28 10.7 0.1 31 63 2 34 1 46 0.80 P-loop containing dynein motor region AAA_7 PF12775.7 181 pCP023546_00033 - 181 0.18 11.3 0.7 2 2 8.9 4.3e+03 -3.0 0.0 65 82 156 173 132 176 0.64 P-loop containing dynein motor region Cytidylate_kin2 PF13189.6 179 pCP023546_00033 - 181 0.2 11.8 1.5 1 2 0.038 19 5.4 0.1 1 23 6 28 6 36 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 pCP023546_00033 - 181 0.2 11.8 1.5 2 2 0.026 12 5.9 0.1 108 147 99 138 28 143 0.73 Cytidylate kinase-like family DUF4111 PF13427.6 103 pCP023546_00034 - 55 0.0023 18.0 0.0 1 1 1.5e-07 0.0027 17.9 0.0 69 103 13 47 7 47 0.95 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pCP023546_00035 - 218 3.1e-17 62.6 0.0 1 3 0.56 2.5e+03 -1.3 0.0 60 80 3 23 2 25 0.81 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pCP023546_00035 - 218 3.1e-17 62.6 0.0 2 3 1.5 6.8e+03 -2.7 0.0 8 22 52 66 50 72 0.73 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pCP023546_00035 - 218 3.1e-17 62.6 0.0 3 3 3.9e-20 1.8e-16 60.2 0.0 1 67 148 214 148 217 0.97 Domain of unknown function (DUF4111) Polbeta PF18765.1 93 pCP023546_00035 - 218 8.7e-10 38.6 0.0 1 2 8.5e-13 3.8e-09 36.5 0.0 8 74 22 92 11 97 0.77 Polymerase beta, Nucleotidyltransferase Polbeta PF18765.1 93 pCP023546_00035 - 218 8.7e-10 38.6 0.0 2 2 0.33 1.5e+03 -0.6 0.0 17 42 103 134 98 153 0.72 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 95 pCP023546_00035 - 218 2.4e-06 27.8 0.0 1 1 1e-09 4.5e-06 26.9 0.0 14 76 25 89 11 107 0.76 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 199 pCP023546_00035 - 218 0.00015 21.7 0.0 1 1 4.6e-08 0.00021 21.3 0.0 88 138 21 71 2 84 0.86 Adenylate cyclase NT domain PNP_UDP_1 PF01048.20 234 pCP023546_00036 - 256 7.6e-29 100.6 0.0 1 1 4.8e-33 8.7e-29 100.4 0.0 3 219 34 237 32 255 0.86 Phosphorylase superfamily CPSF_A PF03178.15 322 pCP023546_00037 - 95 0.034 13.4 0.0 1 1 9.6e-06 0.034 13.4 0.0 248 286 57 94 23 95 0.80 CPSF A subunit region ATPase PF06745.13 231 pCP023546_00037 - 95 0.048 13.0 0.2 1 1 1.4e-05 0.049 13.0 0.2 73 152 7 87 1 94 0.74 KaiC TipAS PF07739.13 117 pCP023546_00037 - 95 0.061 13.9 1.5 1 1 0.00033 1.2 9.7 1.9 27 96 5 80 1 92 0.80 TipAS antibiotic-recognition domain 3HCDH PF00725.22 97 pCP023546_00037 - 95 0.091 13.4 0.2 1 1 3.8e-05 0.14 12.8 0.2 7 65 36 93 33 95 0.91 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DUF4942 PF13708.6 199 pCP023546_00037 - 95 0.15 12.0 0.0 1 1 7.1e-05 0.26 11.3 0.0 22 74 36 87 33 93 0.88 Domain of unknown function (DUF4942) GTP_EFTU PF00009.27 194 pCP023546_00039 - 639 5.6e-59 198.9 0.3 1 1 3.9e-62 7.8e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pCP023546_00039 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pCP023546_00039 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pCP023546_00039 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pCP023546_00039 - 639 2.1e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pCP023546_00039 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pCP023546_00039 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pCP023546_00039 - 639 0.0091 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pCP023546_00039 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pCP023546_00039 - 639 0.05 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family APH PF01636.23 240 pCP023546_00040 - 306 5.8e-22 78.8 0.0 1 1 2.1e-25 7.5e-22 78.4 0.0 13 230 39 256 27 265 0.75 Phosphotransferase enzyme family RIO1 PF01163.22 188 pCP023546_00040 - 306 2.1e-06 27.5 0.1 1 2 0.00064 2.3 7.8 0.0 47 111 52 117 46 131 0.76 RIO1 family RIO1 PF01163.22 188 pCP023546_00040 - 306 2.1e-06 27.5 0.1 2 2 5.8e-07 0.0021 17.7 0.1 97 154 165 223 149 253 0.81 RIO1 family DUF1679 PF07914.11 414 pCP023546_00040 - 306 0.00034 19.6 0.1 1 2 1 3.7e+03 -3.6 0.0 113 142 60 89 55 92 0.78 Protein of unknown function (DUF1679) DUF1679 PF07914.11 414 pCP023546_00040 - 306 0.00034 19.6 0.1 2 2 1.6e-07 0.00056 18.9 0.0 213 318 134 238 102 253 0.70 Protein of unknown function (DUF1679) Choline_kinase PF01633.20 213 pCP023546_00040 - 306 0.00076 19.1 0.2 1 2 5.9e-07 0.0021 17.7 0.1 21 171 61 218 46 219 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 pCP023546_00040 - 306 0.00076 19.1 0.2 2 2 0.51 1.8e+03 -1.7 0.0 6 25 249 268 247 271 0.89 Choline/ethanolamine kinase EcKinase PF02958.20 294 pCP023546_00040 - 306 0.0095 15.3 0.1 1 1 3.7e-06 0.013 14.8 0.1 189 270 162 243 121 262 0.65 Ecdysteroid kinase PcfJ PF14284.6 144 pCP023546_00042 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pCP023546_00042 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain Topoisom_bac PF01131.20 413 pCP023546_00043 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pCP023546_00043 - 730 6.3e-12 45.6 2.6 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pCP023546_00043 - 730 6.3e-12 45.6 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pCP023546_00043 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pCP023546_00043 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pCP023546_00043 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP023546_00043 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pCP023546_00043 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pCP023546_00043 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pCP023546_00043 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pCP023546_00043 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pCP023546_00043 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pCP023546_00043 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pCP023546_00043 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pCP023546_00043 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pCP023546_00043 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pCP023546_00043 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pCP023546_00043 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pCP023546_00043 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pCP023546_00043 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pCP023546_00043 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pCP023546_00043 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP023546_00043 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pCP023546_00043 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pCP023546_00043 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pCP023546_00043 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pCP023546_00043 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pCP023546_00043 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pCP023546_00043 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pCP023546_00043 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pCP023546_00043 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pCP023546_00043 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pCP023546_00043 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pCP023546_00043 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type DUF1461 PF07314.11 189 pCP023546_00044 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) CdhD PF03599.16 386 pCP023546_00045 - 246 0.002 16.9 0.0 1 1 5.3e-07 0.0031 16.3 0.0 269 358 39 127 30 136 0.86 CO dehydrogenase/acetyl-CoA synthase delta subunit Pox_RNA_pol PF03293.14 160 pCP023546_00045 - 246 0.012 15.3 0.9 1 1 4.5e-06 0.027 14.2 0.9 35 158 20 138 7 140 0.83 Poxvirus DNA-directed RNA polymerase, 18 kD subunit Redoxin PF08534.10 147 pCP023546_00045 - 246 0.059 13.1 0.5 1 2 0.079 4.7e+02 0.4 0.0 117 146 49 76 31 77 0.79 Redoxin Redoxin PF08534.10 147 pCP023546_00045 - 246 0.059 13.1 0.5 2 2 7.9e-05 0.47 10.2 0.1 49 76 184 213 178 230 0.79 Redoxin PRELI PF04707.14 157 pCP023546_00046 - 265 0.044 13.6 0.3 1 2 0.26 2.4e+03 -1.8 0.1 107 133 23 45 5 72 0.49 PRELI-like family PRELI PF04707.14 157 pCP023546_00046 - 265 0.044 13.6 0.3 2 2 4.9e-06 0.044 13.6 0.3 96 155 83 147 78 149 0.87 PRELI-like family TACC_C PF05010.14 201 pCP023546_00046 - 265 0.92 9.3 9.3 1 2 0.00027 2.4 7.9 8.2 14 124 2 111 1 135 0.79 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 pCP023546_00046 - 265 0.92 9.3 9.3 2 2 0.035 3.2e+02 1.0 1.1 8 45 100 139 94 148 0.70 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TrbM PF07424.11 156 pCP023546_00047 - 252 4.1e-38 130.8 2.0 1 1 2.9e-42 5.3e-38 130.4 2.0 1 154 25 190 25 192 0.88 TrbM Cag12 PF13117.6 97 pCP023546_00048 - 143 1.4e-16 60.7 0.3 1 1 2.1e-20 1.9e-16 60.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pCP023546_00048 - 143 0.06 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) T4SS-DNA_transf PF02534.14 469 pCP023546_00049 - 603 8.3e-104 348.0 0.1 1 1 3.2e-107 1.1e-103 347.5 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pCP023546_00049 - 603 3.5e-24 85.2 0.0 1 1 1.9e-27 6.8e-24 84.3 0.0 2 125 406 528 405 529 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pCP023546_00049 - 603 3.2e-15 55.9 0.0 1 2 2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pCP023546_00049 - 603 3.2e-15 55.9 0.0 2 2 1.6e-13 5.8e-10 38.6 0.0 187 369 347 531 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 pCP023546_00049 - 603 0.17 11.9 0.1 1 1 8.3e-05 0.3 11.2 0.1 37 93 9 87 3 100 0.78 Putative Actinobacterial Holin-X, holin superfamily III ECF_trnsprt PF12822.7 172 pCP023546_00049 - 603 1.2 9.2 8.3 1 1 0.00056 2 8.5 8.3 101 168 4 79 1 81 0.85 ECF transporter, substrate-specific component Carbam_trans_N PF02543.15 338 pCP023546_00050 - 267 0.053 13.2 0.0 1 1 4.1e-06 0.073 12.7 0.0 195 313 117 236 74 243 0.86 Carbamoyltransferase N-terminus T2SSE PF00437.20 273 pCP023546_00051 - 339 6.9e-55 186.0 0.0 1 1 1.4e-57 8.1e-55 185.8 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pCP023546_00051 - 339 7.2e-05 23.3 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pCP023546_00051 - 339 0.00012 21.6 0.0 1 1 3.2e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pCP023546_00051 - 339 0.00028 20.4 0.0 1 1 9.2e-07 0.00052 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pCP023546_00051 - 339 0.0014 18.9 0.0 1 1 4.7e-06 0.0026 18.0 0.0 5 56 160 221 155 244 0.72 AAA domain DEAD PF00270.29 176 pCP023546_00051 - 339 0.0014 18.4 0.0 1 1 4.1e-06 0.0023 17.7 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pCP023546_00051 - 339 0.0026 17.5 0.2 1 1 9.7e-06 0.0054 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pCP023546_00051 - 339 0.0035 17.3 0.0 1 1 1.3e-05 0.0073 16.3 0.0 10 45 152 186 141 194 0.74 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pCP023546_00051 - 339 0.0055 15.7 0.0 1 1 1.4e-05 0.0079 15.1 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pCP023546_00051 - 339 0.0073 16.2 0.0 1 1 2.3e-05 0.013 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pCP023546_00051 - 339 0.0088 15.4 0.0 1 1 2.6e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pCP023546_00051 - 339 0.0091 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 305 0.85 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pCP023546_00051 - 339 0.018 15.1 0.0 1 1 6.4e-05 0.036 14.2 0.0 27 48 164 185 142 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 pCP023546_00051 - 339 0.021 13.8 0.0 1 1 6.2e-05 0.035 13.0 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 pCP023546_00051 - 339 0.023 14.7 0.0 1 1 9.6e-05 0.054 13.5 0.0 5 50 147 186 135 248 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 pCP023546_00051 - 339 0.024 14.4 0.0 1 1 9.2e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 pCP023546_00051 - 339 0.026 14.2 0.0 1 1 9.8e-05 0.055 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pCP023546_00051 - 339 0.031 13.8 0.0 1 1 0.00011 0.061 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 pCP023546_00051 - 339 0.035 14.2 0.1 1 1 0.00019 0.11 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 pCP023546_00051 - 339 0.04 13.7 0.0 1 1 0.00011 0.064 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 pCP023546_00051 - 339 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 pCP023546_00051 - 339 0.046 13.0 0.0 1 1 0.00015 0.082 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin PRK PF00485.18 197 pCP023546_00051 - 339 0.058 13.1 0.0 1 1 0.0002 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pCP023546_00051 - 339 0.065 11.9 0.0 1 1 0.00016 0.092 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pCP023546_00051 - 339 0.075 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pCP023546_00051 - 339 0.089 12.7 0.0 1 1 0.00036 0.2 11.5 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pCP023546_00051 - 339 0.089 12.7 0.4 1 1 0.00039 0.22 11.5 0.3 71 102 149 179 129 220 0.81 Microtubule binding NTPase_1 PF03266.15 168 pCP023546_00051 - 339 0.11 12.4 0.1 1 1 0.00042 0.23 11.3 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 pCP023546_00051 - 339 0.12 13.0 0.0 1 2 8.1 4.6e+03 -1.9 0.0 25 60 14 49 4 61 0.76 AAA domain AAA_18 PF13238.6 130 pCP023546_00051 - 339 0.12 13.0 0.0 2 2 0.0007 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 pCP023546_00051 - 339 0.15 11.7 0.0 1 1 0.00043 0.24 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pCP023546_00051 - 339 0.15 11.7 0.0 1 1 0.00044 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pCP023546_00051 - 339 0.38 11.2 4.1 1 2 2.7 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 pCP023546_00051 - 339 0.38 11.2 4.1 2 2 0.00068 0.38 11.2 1.3 22 37 163 178 160 184 0.87 AAA domain TrbI PF03743.14 187 pCP023546_00052 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.5e+03 -3.4 0.3 136 154 141 166 120 174 0.53 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pCP023546_00052 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pCP023546_00052 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease CagX PF03524.15 211 pCP023546_00053 - 298 9.6e-56 188.8 1.9 1 1 8.4e-60 1.5e-55 188.2 1.9 2 211 32 273 31 273 0.92 Conjugal transfer protein VirB8 PF04335.13 214 pCP023546_00054 - 219 1.6e-52 178.5 0.5 1 1 2e-56 1.8e-52 178.3 0.5 4 214 10 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pCP023546_00054 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C La_HTH_kDCL PF18177.1 90 pCP023546_00055 - 54 0.2 12.0 0.0 1 1 1.2e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain TrbL PF04610.14 215 pCP023546_00056 - 331 2.8e-30 105.7 32.6 1 2 6.2e-34 2.8e-30 105.7 32.6 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pCP023546_00056 - 331 2.8e-30 105.7 32.6 2 2 0.59 2.6e+03 -2.1 0.1 58 88 289 325 260 330 0.47 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pCP023546_00056 - 331 0.072 12.9 0.7 1 2 0.95 4.2e+03 -2.4 0.1 39 50 70 81 61 108 0.63 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pCP023546_00056 - 331 0.072 12.9 0.7 2 2 5e-05 0.23 11.3 0.1 37 81 243 287 222 298 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 pCP023546_00056 - 331 0.17 11.9 0.0 1 1 6.8e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) AIM3 PF17096.5 88 pCP023546_00056 - 331 0.3 12.1 6.0 1 1 0.00013 0.57 11.1 6.0 9 38 299 328 284 330 0.89 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 pCP023546_00057 - 329 1.7e-28 100.4 13.1 1 1 5.2e-32 2.3e-28 99.9 13.1 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pCP023546_00057 - 329 0.0035 17.5 0.5 1 2 0.27 1.2e+03 -0.3 0.0 30 54 134 158 120 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pCP023546_00057 - 329 0.0035 17.5 0.5 2 2 4.7e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 pCP023546_00057 - 329 0.018 15.7 0.8 1 2 1.3 6e+03 -2.1 0.0 55 70 124 139 101 163 0.57 von Willebrand factor type A domain VWA_2 PF13519.6 107 pCP023546_00057 - 329 0.018 15.7 0.8 2 2 8.6e-06 0.039 14.6 0.2 31 84 208 270 197 295 0.83 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 pCP023546_00057 - 329 0.48 11.1 11.5 1 2 0.042 1.9e+02 2.7 0.8 49 135 108 145 95 182 0.47 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pCP023546_00057 - 329 0.48 11.1 11.5 2 2 8.9e-05 0.4 11.4 4.6 49 117 225 307 205 328 0.69 Apoptosis antagonizing transcription factor IF2_N PF04760.15 54 pCP023546_00058 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pCP023546_00058 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pCP023546_00058 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pCP023546_00058 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pCP023546_00058 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pCP023546_00058 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pCP023546_00058 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 pCP023546_00059 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family PBECR2 PF18810.1 119 pCP023546_00060 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 Phage_pRha PF09669.10 88 pCP023546_00061 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 pCP023546_00061 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 pCP023546_00061 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) CagE_TrbE_VirB PF03135.14 206 pCP023546_00062 - 922 3.1e-51 174.4 0.4 1 1 7.9e-55 7.1e-51 173.2 0.4 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pCP023546_00062 - 922 3.6e-21 75.2 0.8 1 1 6.9e-25 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein TrbC PF04956.13 99 pCP023546_00063 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pCP023546_00063 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pCP023546_00065 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pCP023546_00065 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 W2 PF02020.18 79 pGCA_000015525_00001 - 357 0.037 14.2 0.0 1 1 5.5e-06 0.099 12.8 0.0 38 77 271 331 267 333 0.86 eIF4-gamma/eIF5/eIF2-epsilon Lip_prot_lig_C PF10437.9 85 pGCA_000015525_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pGCA_000015525_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pGCA_000015525_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pGCA_000015525_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pGCA_000015525_00003 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pGCA_000015525_00003 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 pGCA_000015525_00004 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pGCA_000015525_00004 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pGCA_000015525_00004 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pGCA_000015525_00004 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pGCA_000015525_00004 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pGCA_000015525_00004 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pGCA_000015525_00004 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pGCA_000015525_00004 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pGCA_000015525_00004 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 pGCA_000015525_00005 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pGCA_000015525_00005 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pGCA_000015525_00005 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pGCA_000015525_00005 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pGCA_000015525_00005 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pGCA_000015525_00005 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pGCA_000015525_00006 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pGCA_000015525_00006 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pGCA_000015525_00007 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pGCA_000015525_00007 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pGCA_000015525_00007 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_000015525_00007 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pGCA_000015525_00007 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pGCA_000015525_00007 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pGCA_000015525_00008 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pGCA_000015525_00009 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_000015525_00009 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_000015525_00009 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 pGCA_000015525_00009 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_000015525_00009 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_000015525_00009 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pGCA_000015525_00009 - 1932 9.9e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pGCA_000015525_00009 - 1932 9.9e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pGCA_000015525_00009 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pGCA_000015525_00009 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 pGCA_000015525_00009 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pGCA_000015525_00009 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 pGCA_000015525_00010 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pGCA_000015525_00010 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 pGCA_000015525_00011 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_000015525_00011 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pGCA_000015525_00012 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_000015525_00012 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_000015525_00012 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pGCA_000015525_00012 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pGCA_000015525_00012 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_000015525_00012 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_000015525_00012 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pGCA_000015525_00012 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pGCA_000015525_00012 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pGCA_000015525_00012 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pGCA_000015525_00012 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 pGCA_000015525_00013 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pGCA_000015525_00013 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pGCA_000015525_00013 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pGCA_000015525_00013 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pGCA_000015525_00013 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 pGCA_000015525_00015 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pGCA_000015525_00015 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pGCA_000015525_00016 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pGCA_000015525_00016 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 pGCA_000015525_00016 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pGCA_000015525_00016 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_000015525_00016 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pGCA_000015525_00017 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pGCA_000015525_00017 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) UBA_6 PF18039.1 42 pGCA_000015525_00018 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 pGCA_000015525_00018 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pGCA_000015525_00018 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 pGCA_000015525_00018 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 pGCA_000015525_00019 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pGCA_000015525_00019 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 pGCA_000015525_00019 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pGCA_000015525_00021 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pGCA_000015525_00022 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pGCA_000015525_00023 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pGCA_000015525_00023 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_000015525_00023 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_000015525_00023 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_000015525_00023 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pGCA_000015525_00023 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_000015525_00023 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pGCA_000015525_00023 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pGCA_000015525_00023 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pGCA_000015525_00023 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pGCA_000015525_00023 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pGCA_000015525_00023 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 pGCA_000015525_00024 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pGCA_000015525_00024 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_000015525_00024 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_000015525_00024 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pGCA_000015525_00024 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_000015525_00024 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_000015525_00024 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pGCA_000015525_00024 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_000015525_00024 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_000015525_00024 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pGCA_000015525_00025 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pGCA_000015525_00025 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pGCA_000015525_00025 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pGCA_000015525_00027 - 87 3.5e-13 49.6 6.7 1 1 4.5e-17 4e-13 49.4 6.7 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pGCA_000015525_00027 - 87 0.17 11.8 4.4 1 1 2.6e-05 0.23 11.3 4.4 78 135 37 87 9 87 0.70 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pGCA_000015525_00028 - 922 4.9e-50 170.5 0.5 1 1 1.9e-53 1.2e-49 169.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pGCA_000015525_00028 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pGCA_000015525_00028 - 922 0.048 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pGCA_000015525_00029 - 188 2e-29 102.0 0.1 1 1 1.9e-33 3.3e-29 101.3 0.1 2 88 24 122 23 122 0.83 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 pGCA_000015525_00030 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pGCA_000015525_00030 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pGCA_000015525_00030 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pGCA_000015525_00030 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_000015525_00030 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_000015525_00030 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pGCA_000015525_00030 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pGCA_000015525_00030 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pGCA_000015525_00030 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pGCA_000015525_00030 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pGCA_000015525_00030 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pGCA_000015525_00030 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pGCA_000015525_00030 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pGCA_000015525_00030 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pGCA_000015525_00031 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pGCA_000015525_00032 - 91 0.00046 19.9 6.9 1 2 5.3e-08 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pGCA_000015525_00032 - 91 0.00046 19.9 6.9 2 2 0.014 1.3e+02 2.5 0.2 31 52 57 78 56 80 0.82 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pGCA_000015525_00032 - 91 0.0053 17.3 1.0 1 1 6.9e-07 0.0062 17.1 1.0 21 87 9 81 1 85 0.90 FliG N-terminal domain T4SS PF07996.11 197 pGCA_000015525_00033 - 323 7.9e-29 101.5 13.4 1 1 4e-32 1e-28 101.1 13.4 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pGCA_000015525_00033 - 323 0.0081 16.3 0.6 1 2 0.99 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pGCA_000015525_00033 - 323 0.0081 16.3 0.6 2 2 1.2e-05 0.03 14.5 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pGCA_000015525_00033 - 323 0.014 16.1 5.0 1 2 0.046 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pGCA_000015525_00033 - 323 0.014 16.1 5.0 2 2 5.3e-06 0.014 16.1 5.0 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 pGCA_000015525_00033 - 323 0.043 14.5 0.8 1 2 2.2 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pGCA_000015525_00033 - 323 0.043 14.5 0.8 2 2 1.7e-05 0.043 14.5 0.8 32 84 209 270 202 296 0.83 von Willebrand factor type A domain KNOX2 PF03791.13 48 pGCA_000015525_00033 - 323 0.07 12.6 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pGCA_000015525_00033 - 323 0.07 12.6 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain THOC7 PF05615.13 132 pGCA_000015525_00033 - 323 1.2 9.4 11.3 1 2 0.00061 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pGCA_000015525_00033 - 323 1.2 9.4 11.3 2 2 0.17 4.4e+02 1.1 6.3 16 71 231 294 202 315 0.50 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pGCA_000015525_00033 - 323 3.5 7.1 7.2 1 2 0.19 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pGCA_000015525_00033 - 323 3.5 7.1 7.2 2 2 0.00046 1.2 8.6 3.3 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein TrbL PF04610.14 215 pGCA_000015525_00034 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pGCA_000015525_00034 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pGCA_000015525_00034 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pGCA_000015525_00034 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pGCA_000015525_00034 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pGCA_000015525_00035 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pGCA_000015525_00035 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pGCA_000015525_00036 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pGCA_000015525_00036 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pGCA_000015525_00037 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pGCA_000015525_00037 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pGCA_000015525_00037 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pGCA_000015525_00038 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pGCA_000015525_00038 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pGCA_000015525_00039 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pGCA_000015525_00039 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_000015525_00039 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pGCA_000015525_00039 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pGCA_000015525_00039 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pGCA_000015525_00039 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pGCA_000015525_00039 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pGCA_000015525_00039 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pGCA_000015525_00039 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pGCA_000015525_00039 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pGCA_000015525_00039 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pGCA_000015525_00039 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pGCA_000015525_00039 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pGCA_000015525_00039 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pGCA_000015525_00039 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pGCA_000015525_00039 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pGCA_000015525_00039 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pGCA_000015525_00039 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pGCA_000015525_00039 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pGCA_000015525_00039 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pGCA_000015525_00039 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pGCA_000015525_00039 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pGCA_000015525_00039 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pGCA_000015525_00039 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pGCA_000015525_00039 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pGCA_000015525_00039 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pGCA_000015525_00039 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pGCA_000015525_00039 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pGCA_000015525_00039 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pGCA_000015525_00039 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pGCA_000015525_00039 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pGCA_000015525_00039 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pGCA_000015525_00040 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_000015525_00040 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pGCA_000015525_00040 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_000015525_00040 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pGCA_000015525_00040 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pGCA_000015525_00041 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pGCA_000015525_00041 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pGCA_000015525_00041 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pGCA_000015525_00041 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pGCA_000015525_00041 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pGCA_000015525_00042 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pGCA_000015525_00043 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pGCA_000015525_00043 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pGCA_000015525_00043 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pGCA_000015525_00043 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_000015525_00043 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_000015525_00043 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pGCA_000015525_00045 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pGCA_000015525_00045 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pGCA_000015525_00046 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pGCA_000015525_00046 - 730 5.6e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pGCA_000015525_00046 - 730 5.6e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pGCA_000015525_00046 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pGCA_000015525_00046 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pGCA_000015525_00046 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_000015525_00046 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_000015525_00046 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pGCA_000015525_00046 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pGCA_000015525_00046 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pGCA_000015525_00046 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pGCA_000015525_00046 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pGCA_000015525_00046 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pGCA_000015525_00046 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pGCA_000015525_00046 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pGCA_000015525_00046 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pGCA_000015525_00046 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pGCA_000015525_00046 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pGCA_000015525_00046 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pGCA_000015525_00046 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pGCA_000015525_00046 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pGCA_000015525_00046 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_000015525_00046 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_000015525_00046 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pGCA_000015525_00046 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pGCA_000015525_00046 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pGCA_000015525_00046 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_000015525_00046 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pGCA_000015525_00046 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pGCA_000015525_00046 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pGCA_000015525_00046 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pGCA_000015525_00046 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pGCA_000015525_00046 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pGCA_000015525_00046 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pGCA_000015525_00047 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pGCA_000015525_00047 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pGCA_000015525_00049 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pGCA_000015525_00049 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pGCA_000015525_00049 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pGCA_000015525_00049 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pGCA_000015525_00049 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pGCA_000015525_00049 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pGCA_000015525_00049 - 639 0.00029 21.1 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pGCA_000015525_00049 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pGCA_000015525_00049 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pGCA_000015525_00049 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 pGCA_000015525_00049 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 pGCA_000015525_00050 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pGCA_000015525_00050 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) VirB8 PF04335.13 214 pGCA_000015525_00052 - 225 5.3e-29 101.6 0.4 1 1 3.5e-33 6.2e-29 101.4 0.4 23 213 26 208 13 209 0.88 VirB8 protein CagX PF03524.15 211 pGCA_000015525_00053 - 356 2.9e-29 102.3 2.4 1 1 2.4e-33 4.4e-29 101.7 2.4 5 210 132 347 128 348 0.86 Conjugal transfer protein TrbI PF03743.14 187 pGCA_000015525_00054 - 378 9.8e-42 142.9 1.9 1 2 0.78 7e+03 -3.3 0.0 43 54 113 124 104 164 0.59 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pGCA_000015525_00054 - 378 9.8e-42 142.9 1.9 2 2 1.1e-45 9.8e-42 142.9 1.9 1 187 183 362 183 362 0.95 Bacterial conjugation TrbI-like protein VSG_B PF13206.6 356 pGCA_000015525_00054 - 378 0.054 12.7 2.4 1 1 8.4e-06 0.075 12.3 2.4 83 175 28 157 6 175 0.62 Trypanosomal VSG domain FOXP-CC PF16159.5 69 pGCA_000015525_00055 - 66 0.0035 17.9 0.4 1 1 1.1e-06 0.0041 17.7 0.4 31 64 22 55 4 58 0.82 FOXP coiled-coil domain CagS PF16707.5 196 pGCA_000015525_00055 - 66 0.12 12.4 7.2 1 1 3.7e-05 0.13 12.2 7.2 21 71 13 62 2 65 0.74 Cag pathogenicity island protein S of Helicobacter pylori MCR_C PF04609.12 271 pGCA_000015525_00055 - 66 0.28 10.2 5.0 1 1 8.1e-05 0.29 10.2 5.0 193 242 2 51 1 62 0.93 Methyl-coenzyme M reductase operon protein C Aida_N PF08910.10 103 pGCA_000015525_00055 - 66 0.5 10.8 5.7 1 1 0.00015 0.52 10.7 5.7 24 86 4 65 1 66 0.89 Aida N-terminus Allexi_40kDa PF05549.11 271 pGCA_000015525_00055 - 66 1.3 8.5 5.4 1 1 0.00035 1.3 8.5 5.4 90 146 7 64 1 66 0.69 Allexivirus 40kDa protein T2SSE PF00437.20 273 pGCA_000015525_00056 - 317 2.4e-45 154.7 0.0 1 1 3.9e-48 3e-45 154.4 0.0 11 272 20 294 12 295 0.88 Type II/IV secretion system protein ABC_tran PF00005.27 137 pGCA_000015525_00056 - 317 4.3e-05 24.0 0.1 1 1 8e-08 6.2e-05 23.5 0.1 8 70 140 201 133 278 0.72 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_000015525_00056 - 317 5.1e-05 22.7 0.1 1 1 1.3e-07 0.0001 21.8 0.1 33 60 137 164 127 167 0.90 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pGCA_000015525_00056 - 317 5.9e-05 22.7 0.0 1 1 1.4e-07 0.00011 21.8 0.0 26 63 136 173 132 212 0.91 P-loop containing dynein motor region Zeta_toxin PF06414.12 199 pGCA_000015525_00056 - 317 0.001 18.4 0.0 1 1 2.6e-06 0.0021 17.4 0.0 14 50 141 177 131 182 0.89 Zeta toxin RsgA_GTPase PF03193.16 167 pGCA_000015525_00056 - 317 0.0013 18.7 0.0 1 1 4e-06 0.0031 17.4 0.0 86 124 129 168 112 182 0.81 RsgA GTPase Pox_A32 PF04665.12 242 pGCA_000015525_00056 - 317 0.0032 16.9 0.0 1 1 6.9e-06 0.0054 16.2 0.0 7 37 137 167 132 191 0.90 Poxvirus A32 protein AAA_16 PF13191.6 170 pGCA_000015525_00056 - 317 0.0035 17.7 0.0 1 1 6e-06 0.0047 17.3 0.0 24 63 143 182 126 263 0.79 AAA ATPase domain Dynamin_N PF00350.23 168 pGCA_000015525_00056 - 317 0.0037 17.3 0.1 1 2 1.4e-05 0.011 15.8 0.0 1 45 146 189 146 217 0.68 Dynamin family Dynamin_N PF00350.23 168 pGCA_000015525_00056 - 317 0.0037 17.3 0.1 2 2 4.7 3.7e+03 -2.2 0.0 120 143 275 299 267 312 0.65 Dynamin family ResIII PF04851.15 171 pGCA_000015525_00056 - 317 0.0049 16.9 0.0 1 1 8.4e-06 0.0066 16.5 0.0 17 92 134 205 108 289 0.82 Type III restriction enzyme, res subunit AAA_28 PF13521.6 163 pGCA_000015525_00056 - 317 0.0067 16.7 0.0 1 1 1.7e-05 0.013 15.7 0.0 2 86 146 230 145 256 0.65 AAA domain IIGP PF05049.13 375 pGCA_000015525_00056 - 317 0.0084 15.2 0.0 1 2 5.2e-05 0.04 13.0 0.0 26 56 134 164 126 171 0.88 Interferon-inducible GTPase (IIGP) IIGP PF05049.13 375 pGCA_000015525_00056 - 317 0.0084 15.2 0.0 2 2 0.71 5.5e+02 -0.6 0.0 103 124 273 294 265 299 0.79 Interferon-inducible GTPase (IIGP) DUF2075 PF09848.9 363 pGCA_000015525_00056 - 317 0.0084 15.4 0.0 1 1 1.5e-05 0.012 14.9 0.0 1 37 143 194 143 221 0.61 Uncharacterized conserved protein (DUF2075) TrwB_AAD_bind PF10412.9 386 pGCA_000015525_00056 - 317 0.012 14.5 0.0 1 1 2.4e-05 0.018 13.9 0.0 15 52 143 180 139 190 0.84 Type IV secretion-system coupling protein DNA-binding domain Septin PF00735.18 281 pGCA_000015525_00056 - 317 0.022 14.1 1.0 1 2 2.2 1.7e+03 -2.0 0.1 76 115 36 75 35 79 0.78 Septin Septin PF00735.18 281 pGCA_000015525_00056 - 317 0.022 14.1 1.0 2 2 4.2e-05 0.033 13.5 0.1 6 40 145 181 141 215 0.64 Septin AAA_29 PF13555.6 61 pGCA_000015525_00056 - 317 0.025 14.3 0.0 1 1 7.2e-05 0.056 13.2 0.0 20 43 141 164 131 176 0.76 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 pGCA_000015525_00056 - 317 0.025 14.3 0.0 1 1 5.2e-05 0.041 13.6 0.0 11 47 132 168 123 186 0.83 Sigma-54 interaction domain DEAD PF00270.29 176 pGCA_000015525_00056 - 317 0.033 13.9 0.0 1 1 7.4e-05 0.058 13.2 0.0 9 30 138 159 133 207 0.83 DEAD/DEAH box helicase cobW PF02492.19 177 pGCA_000015525_00056 - 317 0.034 13.7 0.0 1 1 8.1e-05 0.063 12.9 0.0 3 44 146 187 144 205 0.80 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 146 pGCA_000015525_00056 - 317 0.043 14.1 0.0 1 1 0.0001 0.081 13.3 0.0 9 33 142 166 134 184 0.84 AAA domain RIX1 PF08167.12 188 pGCA_000015525_00056 - 317 0.077 12.7 0.0 1 1 0.00017 0.13 12.0 0.0 95 130 269 304 264 307 0.95 rRNA processing/ribosome biogenesis NACHT PF05729.12 166 pGCA_000015525_00056 - 317 0.12 12.3 0.0 1 1 0.00029 0.23 11.4 0.0 3 23 146 166 144 171 0.89 NACHT domain Sigma54_activ_2 PF14532.6 138 pGCA_000015525_00056 - 317 0.14 12.3 0.0 1 1 0.00031 0.24 11.5 0.0 12 59 134 181 132 205 0.87 Sigma-54 interaction domain MobC PF05713.11 45 pGCA_000015525_00057 - 135 9.4e-05 22.8 4.8 1 2 2.8e-08 0.00012 22.4 2.5 7 44 64 102 60 109 0.73 Bacterial mobilisation protein (MobC) MobC PF05713.11 45 pGCA_000015525_00057 - 135 9.4e-05 22.8 4.8 2 2 0.42 1.9e+03 -0.6 0.0 33 45 111 123 108 123 0.81 Bacterial mobilisation protein (MobC) DUF3810 PF12725.7 310 pGCA_000015525_00057 - 135 0.023 14.1 0.2 1 1 7e-06 0.031 13.6 0.1 71 146 57 130 30 135 0.88 Protein of unknown function (DUF3810) RHH_1 PF01402.21 39 pGCA_000015525_00057 - 135 0.079 12.9 0.4 1 1 5.3e-05 0.24 11.4 0.3 4 34 6 36 3 43 0.85 Ribbon-helix-helix protein, copG family SieB PF14163.6 147 pGCA_000015525_00057 - 135 0.15 11.6 6.5 1 2 0.0022 9.7 5.7 0.7 62 101 7 46 2 86 0.77 Super-infection exclusion protein B SieB PF14163.6 147 pGCA_000015525_00057 - 135 0.15 11.6 6.5 2 2 0.00016 0.72 9.3 0.7 52 83 97 128 91 130 0.88 Super-infection exclusion protein B T4SS-DNA_transf PF02534.14 469 pGCA_000015525_00058 - 628 1.8e-72 244.7 5.8 1 1 1.3e-75 5.9e-72 243.0 5.4 46 453 137 568 94 583 0.83 Type IV secretory system Conjugative DNA transfer TrwB_AAD_bind PF10412.9 386 pGCA_000015525_00058 - 628 1.8e-25 89.7 0.0 1 2 7.3e-06 0.033 13.1 0.0 49 148 167 282 135 295 0.69 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_000015525_00058 - 628 1.8e-25 89.7 0.0 2 2 1.5e-24 6.8e-21 74.6 0.0 141 366 315 538 296 557 0.82 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 126 pGCA_000015525_00058 - 628 1.3e-24 86.6 0.9 1 3 0.36 1.6e+03 -1.0 0.0 22 38 370 386 359 388 0.83 TraM recognition site of TraD and TraG TraG-D_C PF12696.7 126 pGCA_000015525_00058 - 628 1.3e-24 86.6 0.9 2 3 1.5e-27 6.6e-24 84.3 0.0 3 123 421 536 420 538 0.90 TraM recognition site of TraD and TraG TraG-D_C PF12696.7 126 pGCA_000015525_00058 - 628 1.3e-24 86.6 0.9 3 3 1.5 6.9e+03 -3.0 0.5 97 103 595 605 573 621 0.45 TraM recognition site of TraD and TraG DUF418 PF04235.12 163 pGCA_000015525_00058 - 628 0.1 12.5 1.4 1 1 3.6e-05 0.16 11.9 1.4 13 75 7 70 1 79 0.90 Protein of unknown function (DUF418) DUF1738 PF08401.11 128 pGCA_000015525_00060 - 293 8e-10 38.9 0.1 1 2 4.4e-14 8e-10 38.9 0.1 9 88 46 128 37 143 0.87 Domain of unknown function (DUF1738) DUF1738 PF08401.11 128 pGCA_000015525_00060 - 293 8e-10 38.9 0.1 2 2 0.42 7.5e+03 -3.0 0.4 98 106 276 284 266 291 0.38 Domain of unknown function (DUF1738) TrbL PF04610.14 215 pGCA_000015525_00062 - 382 1.4e-33 116.4 21.4 1 3 0.75 6.7e+03 -3.4 0.0 75 89 11 28 4 41 0.57 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pGCA_000015525_00062 - 382 1.4e-33 116.4 21.4 2 3 1.6e-37 1.4e-33 116.4 21.4 1 215 46 280 46 280 0.92 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pGCA_000015525_00062 - 382 1.4e-33 116.4 21.4 3 3 0.04 3.6e+02 0.7 0.1 41 65 356 380 350 382 0.85 TrbL/VirB6 plasmid conjugal transfer protein SHR3_chaperone PF08229.11 188 pGCA_000015525_00062 - 382 2.3 7.1 10.1 1 2 0.018 1.6e+02 1.1 0.6 11 27 75 91 68 103 0.79 ER membrane protein SH3 SHR3_chaperone PF08229.11 188 pGCA_000015525_00062 - 382 2.3 7.1 10.1 2 2 4e-05 0.36 9.8 3.1 6 85 180 262 176 287 0.69 ER membrane protein SH3 Topoisom_bac PF01131.20 413 pGCA_000015525_00063 - 655 5e-89 299.2 9.7 1 1 1.2e-92 7.3e-89 298.6 9.7 3 412 128 545 126 546 0.87 DNA topoisomerase Toprim PF01751.22 103 pGCA_000015525_00063 - 655 9.1e-18 64.4 0.5 1 3 1.5e-21 9.1e-18 64.4 0.5 2 103 5 109 4 109 0.83 Toprim domain Toprim PF01751.22 103 pGCA_000015525_00063 - 655 9.1e-18 64.4 0.5 2 3 1.8 1.1e+04 -3.3 0.1 47 63 218 234 186 242 0.66 Toprim domain Toprim PF01751.22 103 pGCA_000015525_00063 - 655 9.1e-18 64.4 0.5 3 3 0.51 3e+03 -1.5 1.7 37 65 509 554 470 626 0.64 Toprim domain Toprim_4 PF13662.6 89 pGCA_000015525_00063 - 655 0.066 13.7 0.1 1 1 5.1e-05 0.31 11.6 0.1 2 76 4 92 3 105 0.65 Toprim domain SSB PF00436.25 104 pGCA_000015525_00065 - 152 3.5e-24 84.8 0.0 1 1 7.7e-28 4.6e-24 84.5 0.0 1 103 1 103 1 104 0.99 Single-strand binding protein family DnaJ-X PF14308.6 211 pGCA_000015525_00065 - 152 0.0027 17.2 0.1 1 1 6.2e-07 0.0037 16.7 0.1 61 137 60 133 59 148 0.74 X-domain of DnaJ-containing DUF1981 PF09324.10 84 pGCA_000015525_00065 - 152 0.14 12.1 0.0 1 1 3.8e-05 0.23 11.3 0.0 47 72 85 110 77 114 0.83 Domain of unknown function (DUF1981) DUF2512 PF10710.9 136 pGCA_000015525_00066 - 57 0.033 13.9 4.4 1 1 6e-06 0.036 13.7 4.4 62 101 3 42 1 48 0.93 Protein of unknown function (DUF2512) LptF_LptG PF03739.14 354 pGCA_000015525_00066 - 57 0.85 8.4 7.6 1 1 0.00015 0.91 8.3 7.6 308 351 3 46 1 53 0.84 Lipopolysaccharide export system permease LptF/LptG DUF2613 PF11021.8 55 pGCA_000015525_00066 - 57 1.1 9.4 3.3 1 2 0.00053 3.1 8.0 0.9 15 36 8 29 3 33 0.89 Protein of unknown function (DUF2613) DUF2613 PF11021.8 55 pGCA_000015525_00066 - 57 1.1 9.4 3.3 2 2 0.0078 46 4.2 1.0 3 18 26 41 24 52 0.83 Protein of unknown function (DUF2613) PND PF17949.1 125 pGCA_000015525_00067 - 190 0.096 12.9 0.1 1 1 8.7e-06 0.16 12.2 0.1 16 78 67 132 46 136 0.81 FANCM pseudonuclease domain DUF2583 PF10762.9 88 pGCA_000015525_00069 - 117 0.67 10.4 3.8 1 2 0.00097 17 5.9 0.8 15 58 3 46 1 53 0.84 Protein of unknown function (DUF2583) DUF2583 PF10762.9 88 pGCA_000015525_00069 - 117 0.67 10.4 3.8 2 2 0.00084 15 6.1 0.7 14 58 48 98 43 102 0.75 Protein of unknown function (DUF2583) DUF1189 PF06691.11 244 pGCA_000015525_00071 - 181 0.04 13.5 2.2 1 1 4.6e-06 0.042 13.4 2.2 19 88 25 94 13 174 0.84 Protein of unknown function (DUF1189) Cytomega_TRL10 PF06084.11 150 pGCA_000015525_00071 - 181 0.091 12.8 0.3 1 1 1.4e-05 0.13 12.3 0.3 70 119 39 91 30 123 0.74 Cytomegalovirus TRL10 protein HobA PF12163.8 180 pGCA_000015525_00072 - 137 0.0094 15.5 0.5 1 1 1.3e-06 0.012 15.2 0.5 11 101 31 121 23 135 0.79 DNA replication regulator Titin_Ig-rpts PF06582.12 27 pGCA_000015525_00072 - 137 0.044 13.7 0.1 1 1 1e-05 0.093 12.7 0.1 14 24 116 126 114 128 0.88 Titin repeat EptA_B_N PF08019.12 152 pGCA_000015525_00073 - 135 0.029 14.3 1.2 1 2 6.5e-06 0.029 14.3 1.2 98 144 6 52 1 57 0.87 Phosphoethanolamine transferase EptA/EptB EptA_B_N PF08019.12 152 pGCA_000015525_00073 - 135 0.029 14.3 1.2 2 2 0.0095 42 4.0 2.6 70 115 75 120 70 134 0.70 Phosphoethanolamine transferase EptA/EptB 7TMR-DISM_7TM PF07695.11 205 pGCA_000015525_00073 - 135 0.085 12.7 20.1 1 1 2.5e-05 0.11 12.3 20.1 28 144 6 119 3 131 0.55 7TM diverse intracellular signalling FeoB_associated PF12669.7 44 pGCA_000015525_00073 - 135 1.9 9.0 0.0 1 4 0.39 1.7e+03 -0.5 2.0 3 16 9 22 8 28 0.62 FeoB-associated Cys-rich membrane protein FeoB_associated PF12669.7 44 pGCA_000015525_00073 - 135 1.9 9.0 0.0 2 4 2.4 1.1e+04 -3.0 0.0 15 20 60 65 55 70 0.56 FeoB-associated Cys-rich membrane protein FeoB_associated PF12669.7 44 pGCA_000015525_00073 - 135 1.9 9.0 0.0 3 4 2.5 1.1e+04 -3.1 0.2 7 12 78 83 74 93 0.43 FeoB-associated Cys-rich membrane protein FeoB_associated PF12669.7 44 pGCA_000015525_00073 - 135 1.9 9.0 0.0 4 4 0.00042 1.9 9.0 0.0 2 26 106 132 105 134 0.81 FeoB-associated Cys-rich membrane protein Peptidase_M50B PF13398.6 200 pGCA_000015525_00073 - 135 2.3 7.8 9.5 1 2 0.17 7.8e+02 -0.4 0.2 118 135 10 27 3 45 0.56 Peptidase M50B-like Peptidase_M50B PF13398.6 200 pGCA_000015525_00073 - 135 2.3 7.8 9.5 2 2 7.6e-05 0.34 10.5 4.8 94 165 51 130 38 134 0.66 Peptidase M50B-like AAA_31 PF13614.6 177 pGCA_000015525_00077 - 222 1.3e-21 77.3 3.4 1 3 4.6e-18 5.9e-15 55.6 0.1 1 64 1 64 1 81 0.82 AAA domain AAA_31 PF13614.6 177 pGCA_000015525_00077 - 222 1.3e-21 77.3 3.4 2 3 4.1e-08 5.2e-05 23.2 0.2 111 176 77 141 59 142 0.88 AAA domain AAA_31 PF13614.6 177 pGCA_000015525_00077 - 222 1.3e-21 77.3 3.4 3 3 4.8 6.2e+03 -3.1 0.1 96 120 154 179 145 183 0.38 AAA domain CbiA PF01656.23 128 pGCA_000015525_00077 - 222 7e-15 55.2 0.0 1 1 8.4e-18 1.1e-14 54.6 0.0 1 112 4 181 4 195 0.76 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 262 pGCA_000015525_00077 - 222 4e-13 49.2 0.1 1 1 1.7e-14 2.2e-11 43.6 0.1 2 141 3 125 2 147 0.80 ATPase MipZ VirC1 PF07015.11 231 pGCA_000015525_00077 - 222 7e-09 35.3 0.0 1 1 6.6e-12 8.5e-09 35.1 0.0 1 149 1 148 1 202 0.86 VirC1 protein CBP_BcsQ PF06564.12 234 pGCA_000015525_00077 - 222 5.2e-07 29.4 0.0 1 2 4.5e-09 5.8e-06 26.0 0.0 1 50 1 50 1 59 0.88 Cellulose biosynthesis protein BcsQ CBP_BcsQ PF06564.12 234 pGCA_000015525_00077 - 222 5.2e-07 29.4 0.0 2 2 0.19 2.4e+02 1.0 0.0 109 143 77 111 59 119 0.81 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 305 pGCA_000015525_00077 - 222 1.8e-06 27.4 0.1 1 1 2.3e-09 3e-06 26.6 0.0 7 45 8 46 1 131 0.89 Anion-transporting ATPase ParA PF10609.9 246 pGCA_000015525_00077 - 222 8.2e-06 25.4 0.0 1 1 1.1e-08 1.4e-05 24.7 0.0 5 41 3 39 1 65 0.83 NUBPL iron-transfer P-loop NTPase SRP54 PF00448.22 196 pGCA_000015525_00077 - 222 2.5e-05 24.0 0.0 1 1 5e-08 6.5e-05 22.7 0.0 11 134 12 136 9 151 0.75 SRP54-type protein, GTPase domain Fer4_NifH PF00142.18 271 pGCA_000015525_00077 - 222 5.5e-05 22.7 0.1 1 1 9.5e-08 0.00012 21.6 0.1 7 41 9 43 4 61 0.88 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_23 PF13476.6 200 pGCA_000015525_00077 - 222 0.00062 20.3 0.8 1 1 8.4e-07 0.0011 19.6 0.8 29 164 12 171 10 222 0.46 AAA domain CTP_transf_3 PF02348.19 221 pGCA_000015525_00077 - 222 0.0049 16.8 0.2 1 2 0.082 1.1e+02 2.7 0.0 182 216 51 84 13 90 0.67 Cytidylyltransferase CTP_transf_3 PF02348.19 221 pGCA_000015525_00077 - 222 0.0049 16.8 0.2 2 2 9.2e-05 0.12 12.3 0.0 72 121 121 172 115 215 0.76 Cytidylyltransferase MeaB PF03308.16 267 pGCA_000015525_00077 - 222 0.054 12.5 0.0 1 1 7.7e-05 0.098 11.6 0.0 39 69 12 42 7 51 0.92 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA_helicase PF00910.22 107 pGCA_000015525_00077 - 222 0.081 13.3 0.1 1 2 0.0034 4.4 7.7 0.0 6 30 9 31 4 90 0.74 RNA helicase RNA_helicase PF00910.22 107 pGCA_000015525_00077 - 222 0.081 13.3 0.1 2 2 0.084 1.1e+02 3.3 0.0 62 84 133 156 116 168 0.75 RNA helicase CLP1_P PF16575.5 188 pGCA_000015525_00077 - 222 0.11 12.3 0.0 1 1 0.00018 0.23 11.2 0.0 5 35 13 43 10 61 0.92 mRNA cleavage and polyadenylation factor CLP1 P-loop RHH_7 PF16777.5 74 pGCA_000015525_00078 - 209 0.074 13.4 9.9 1 2 3.2e-05 0.57 10.6 2.8 8 68 26 86 4 92 0.82 Transcriptional regulator, RHH-like, CopG RHH_7 PF16777.5 74 pGCA_000015525_00078 - 209 0.074 13.4 9.9 2 2 0.00043 7.7 7.0 0.7 24 61 128 165 101 177 0.80 Transcriptional regulator, RHH-like, CopG Rep_3 PF01051.21 222 pGCA_000015525_00079 - 278 1.3e-26 93.8 17.6 1 1 9.3e-31 1.7e-26 93.5 17.6 3 222 8 237 7 237 0.86 Initiator Replication protein DUF2362 PF10154.9 501 pGCA_000015525_00080 - 373 0.00032 19.8 30.3 1 2 5 1.8e+04 -10.2 18.8 105 235 2 134 1 152 0.53 Uncharacterized conserved protein (DUF2362) DUF2362 PF10154.9 501 pGCA_000015525_00080 - 373 0.00032 19.8 30.3 2 2 8.9e-08 0.00032 19.8 30.3 26 221 150 363 136 371 0.77 Uncharacterized conserved protein (DUF2362) ORC4_C PF14629.6 219 pGCA_000015525_00080 - 373 0.003 17.0 0.9 1 2 0.46 1.7e+03 -1.8 0.4 35 35 73 73 4 108 0.59 Origin recognition complex (ORC) subunit 4 C-terminus ORC4_C PF14629.6 219 pGCA_000015525_00080 - 373 0.003 17.0 0.9 2 2 8.4e-07 0.003 17.0 0.9 22 62 191 240 170 277 0.81 Origin recognition complex (ORC) subunit 4 C-terminus HSBP1 PF06825.12 51 pGCA_000015525_00080 - 373 0.018 14.9 1.9 1 4 0.11 4.1e+02 0.9 0.9 9 30 11 32 10 49 0.72 Heat shock factor binding protein 1 HSBP1 PF06825.12 51 pGCA_000015525_00080 - 373 0.018 14.9 1.9 2 4 0.097 3.5e+02 1.2 0.1 22 38 132 148 114 155 0.83 Heat shock factor binding protein 1 HSBP1 PF06825.12 51 pGCA_000015525_00080 - 373 0.018 14.9 1.9 3 4 5e-06 0.018 14.9 1.9 15 46 180 211 177 218 0.89 Heat shock factor binding protein 1 HSBP1 PF06825.12 51 pGCA_000015525_00080 - 373 0.018 14.9 1.9 4 4 0.74 2.6e+03 -1.7 0.1 39 50 348 359 348 360 0.85 Heat shock factor binding protein 1 ApoO PF09769.9 130 pGCA_000015525_00080 - 373 0.84 9.6 13.8 1 4 1.8 6.5e+03 -3.0 0.0 108 123 75 90 60 92 0.72 Apolipoprotein O ApoO PF09769.9 130 pGCA_000015525_00080 - 373 0.84 9.6 13.8 2 4 0.0023 8.2 6.4 1.8 11 62 137 218 102 228 0.81 Apolipoprotein O ApoO PF09769.9 130 pGCA_000015525_00080 - 373 0.84 9.6 13.8 3 4 0.003 11 6.0 0.2 9 65 252 310 242 312 0.86 Apolipoprotein O ApoO PF09769.9 130 pGCA_000015525_00080 - 373 0.84 9.6 13.8 4 4 0.046 1.7e+02 2.2 0.4 11 54 314 357 303 364 0.72 Apolipoprotein O WXG100 PF06013.12 86 pGCA_000015525_00080 - 373 7 7.0 11.3 1 3 0.8 2.9e+03 -1.4 0.2 18 18 35 35 17 53 0.52 Proteins of 100 residues with WXG WXG100 PF06013.12 86 pGCA_000015525_00080 - 373 7 7.0 11.3 2 3 0.0003 1.1 9.6 4.6 13 81 143 208 137 220 0.79 Proteins of 100 residues with WXG WXG100 PF06013.12 86 pGCA_000015525_00080 - 373 7 7.0 11.3 3 3 3.4 1.2e+04 -3.4 0.0 13 30 274 291 266 294 0.46 Proteins of 100 residues with WXG T4SS PF07996.11 197 pGCA_000015525_00081 - 292 2e-07 31.6 7.7 1 2 1.6e-10 2e-07 31.6 7.7 1 145 20 159 20 179 0.58 Type IV secretion system proteins T4SS PF07996.11 197 pGCA_000015525_00081 - 292 2e-07 31.6 7.7 2 2 9.8 1.3e+04 -3.6 8.9 135 158 214 237 160 241 0.51 Type IV secretion system proteins HBM PF16591.5 254 pGCA_000015525_00081 - 292 0.0031 17.0 13.0 1 2 1.1e-05 0.014 14.8 0.2 195 240 27 72 18 81 0.90 Helical bimodular sensor domain HBM PF16591.5 254 pGCA_000015525_00081 - 292 0.0031 17.0 13.0 2 2 0.01 13 5.1 7.6 43 137 141 237 126 245 0.72 Helical bimodular sensor domain GUN4_N PF16416.5 83 pGCA_000015525_00081 - 292 0.014 15.4 2.2 1 2 0.63 8e+02 0.1 0.3 5 24 143 162 139 179 0.74 ARM-like repeat domain, GUN4-N terminal GUN4_N PF16416.5 83 pGCA_000015525_00081 - 292 0.014 15.4 2.2 2 2 1.1e-05 0.014 15.4 2.2 7 40 217 250 212 251 0.91 ARM-like repeat domain, GUN4-N terminal Zw10 PF06248.13 544 pGCA_000015525_00081 - 292 0.037 12.6 0.3 1 2 2.9e-05 0.037 12.6 0.3 329 361 29 61 24 72 0.90 Centromere/kinetochore Zw10 Zw10 PF06248.13 544 pGCA_000015525_00081 - 292 0.037 12.6 0.3 2 2 0.22 2.8e+02 -0.2 7.2 38 138 96 204 65 243 0.54 Centromere/kinetochore Zw10 HTH_16 PF12645.7 65 pGCA_000015525_00081 - 292 0.062 13.3 0.5 1 2 0.56 7.2e+02 0.3 0.0 16 28 37 49 31 62 0.87 Helix-turn-helix domain HTH_16 PF12645.7 65 pGCA_000015525_00081 - 292 0.062 13.3 0.5 2 2 0.00052 0.67 10.0 0.2 7 50 184 221 181 230 0.79 Helix-turn-helix domain DUF2730 PF10805.8 102 pGCA_000015525_00081 - 292 0.083 13.0 1.5 1 3 0.00046 0.59 10.2 0.0 30 86 21 81 6 87 0.74 Protein of unknown function (DUF2730) DUF2730 PF10805.8 102 pGCA_000015525_00081 - 292 0.083 13.0 1.5 2 3 0.84 1.1e+03 -0.2 0.1 78 91 140 153 97 178 0.58 Protein of unknown function (DUF2730) DUF2730 PF10805.8 102 pGCA_000015525_00081 - 292 0.083 13.0 1.5 3 3 1.4 1.8e+03 -1.0 0.1 44 63 215 234 191 252 0.61 Protein of unknown function (DUF2730) NYD-SP28_assoc PF14775.6 60 pGCA_000015525_00081 - 292 0.11 12.7 6.8 1 3 0.00035 0.45 10.7 0.8 23 52 31 60 27 67 0.91 Sperm tail C-terminal domain NYD-SP28_assoc PF14775.6 60 pGCA_000015525_00081 - 292 0.11 12.7 6.8 2 3 1.3 1.7e+03 -0.8 0.0 30 45 69 84 61 87 0.71 Sperm tail C-terminal domain NYD-SP28_assoc PF14775.6 60 pGCA_000015525_00081 - 292 0.11 12.7 6.8 3 3 0.078 1e+02 3.1 0.3 17 45 155 183 142 192 0.76 Sperm tail C-terminal domain SpmSyn_N PF17950.1 96 pGCA_000015525_00081 - 292 0.11 12.7 0.9 1 3 0.8 1e+03 -0.0 0.0 44 81 17 52 10 65 0.58 S-adenosylmethionine decarboxylase N -terminal SpmSyn_N PF17950.1 96 pGCA_000015525_00081 - 292 0.11 12.7 0.9 2 3 0.00058 0.74 10.0 0.1 27 85 104 164 77 173 0.85 S-adenosylmethionine decarboxylase N -terminal SpmSyn_N PF17950.1 96 pGCA_000015525_00081 - 292 0.11 12.7 0.9 3 3 3 3.8e+03 -1.9 0.0 64 64 207 207 167 238 0.59 S-adenosylmethionine decarboxylase N -terminal GCN5L1 PF06320.13 114 pGCA_000015525_00081 - 292 0.34 11.0 0.1 1 3 0.00027 0.34 11.0 0.1 66 108 29 71 24 77 0.66 GCN5-like protein 1 (GCN5L1) GCN5L1 PF06320.13 114 pGCA_000015525_00081 - 292 0.34 11.0 0.1 2 3 0.026 33 4.6 0.4 24 72 117 164 103 179 0.81 GCN5-like protein 1 (GCN5L1) GCN5L1 PF06320.13 114 pGCA_000015525_00081 - 292 0.34 11.0 0.1 3 3 0.76 9.7e+02 -0.1 1.6 50 71 214 235 174 245 0.70 GCN5-like protein 1 (GCN5L1) Turandot PF07240.11 81 pGCA_000015525_00081 - 292 1.2 9.2 4.2 1 3 0.54 7e+02 0.3 0.1 6 27 31 52 26 64 0.62 Stress-inducible humoral factor Turandot Turandot PF07240.11 81 pGCA_000015525_00081 - 292 1.2 9.2 4.2 2 3 4.2 5.4e+03 -2.6 0.0 20 42 129 151 117 158 0.58 Stress-inducible humoral factor Turandot Turandot PF07240.11 81 pGCA_000015525_00081 - 292 1.2 9.2 4.2 3 3 0.001 1.3 9.0 0.3 9 43 190 224 184 230 0.88 Stress-inducible humoral factor Turandot DASH_Dad3 PF08656.10 73 pGCA_000015525_00081 - 292 2.8 8.1 8.7 1 3 0.0044 5.6 7.1 0.1 6 38 37 71 34 95 0.75 DASH complex subunit Dad3 DASH_Dad3 PF08656.10 73 pGCA_000015525_00081 - 292 2.8 8.1 8.7 2 3 0.1 1.3e+02 2.8 0.4 16 45 145 177 135 197 0.69 DASH complex subunit Dad3 DASH_Dad3 PF08656.10 73 pGCA_000015525_00081 - 292 2.8 8.1 8.7 3 3 0.2 2.6e+02 1.8 0.4 14 41 215 242 210 244 0.82 DASH complex subunit Dad3 Occludin_ELL PF07303.13 101 pGCA_000015525_00081 - 292 2.9 8.7 16.9 1 3 0.00061 0.78 10.5 0.5 15 72 34 91 22 122 0.85 Occludin homology domain Occludin_ELL PF07303.13 101 pGCA_000015525_00081 - 292 2.9 8.7 16.9 2 3 0.0099 13 6.6 1.4 29 84 139 194 123 197 0.80 Occludin homology domain Occludin_ELL PF07303.13 101 pGCA_000015525_00081 - 292 2.9 8.7 16.9 3 3 1.2 1.5e+03 -0.0 3.0 17 53 198 235 186 264 0.68 Occludin homology domain TraF_2 PF13729.6 280 pGCA_000015525_00081 - 292 4.3 6.6 13.1 1 3 0.057 73 2.6 0.5 23 77 26 80 17 106 0.67 F plasmid transfer operon, TraF, protein TraF_2 PF13729.6 280 pGCA_000015525_00081 - 292 4.3 6.6 13.1 2 3 0.0067 8.6 5.6 0.6 14 82 112 177 105 189 0.78 F plasmid transfer operon, TraF, protein TraF_2 PF13729.6 280 pGCA_000015525_00081 - 292 4.3 6.6 13.1 3 3 0.0049 6.3 6.1 0.8 37 91 189 243 182 247 0.88 F plasmid transfer operon, TraF, protein FlxA PF14282.6 101 pGCA_000015525_00081 - 292 6.3 6.8 24.9 1 4 0.0095 12 5.9 2.9 6 61 30 84 26 91 0.73 FlxA-like protein FlxA PF14282.6 101 pGCA_000015525_00081 - 292 6.3 6.8 24.9 2 4 0.13 1.6e+02 2.3 0.0 14 58 69 120 62 132 0.64 FlxA-like protein FlxA PF14282.6 101 pGCA_000015525_00081 - 292 6.3 6.8 24.9 3 4 0.0052 6.7 6.8 5.3 17 59 139 181 124 194 0.87 FlxA-like protein FlxA PF14282.6 101 pGCA_000015525_00081 - 292 6.3 6.8 24.9 4 4 0.065 83 3.3 1.8 13 32 214 233 199 245 0.54 FlxA-like protein TrbM PF07424.11 156 pGCA_000015525_00082 - 260 1.4e-34 119.3 2.2 1 1 1.3e-38 2.2e-34 118.6 2.2 3 153 27 193 25 197 0.92 TrbM DUF5442 PF17514.2 107 pGCA_000015525_00083 - 239 0.025 14.8 4.8 1 2 0.98 4.4e+03 -2.1 0.1 33 50 10 27 4 46 0.63 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pGCA_000015525_00083 - 239 0.025 14.8 4.8 2 2 5.5e-06 0.025 14.8 4.8 31 98 127 194 113 207 0.85 Family of unknown function (DUF5442) Stn1_C PF12659.7 120 pGCA_000015525_00083 - 239 0.028 14.3 2.6 1 2 1.5e-05 0.066 13.2 2.3 5 53 134 183 130 222 0.84 Telomere capping C-terminal wHTH Stn1_C PF12659.7 120 pGCA_000015525_00083 - 239 0.028 14.3 2.6 2 2 0.58 2.6e+03 -1.7 0.0 13 39 199 225 188 233 0.58 Telomere capping C-terminal wHTH DUF2852 PF11014.8 122 pGCA_000015525_00083 - 239 0.035 14.3 0.5 1 3 0.23 1e+03 -0.2 0.3 98 114 5 22 2 43 0.56 Protein of unknown function (DUF2852) DUF2852 PF11014.8 122 pGCA_000015525_00083 - 239 0.035 14.3 0.5 2 3 7.7e-06 0.035 14.3 0.5 44 107 84 149 61 152 0.65 Protein of unknown function (DUF2852) DUF2852 PF11014.8 122 pGCA_000015525_00083 - 239 0.035 14.3 0.5 3 3 0.53 2.4e+03 -1.3 0.0 40 63 183 206 171 218 0.71 Protein of unknown function (DUF2852) DUF1856 PF08983.10 48 pGCA_000015525_00083 - 239 0.056 13.7 1.2 1 2 0.0016 7.1 6.9 0.5 1 14 78 91 78 104 0.91 Domain of unknown function (DUF1856) DUF1856 PF08983.10 48 pGCA_000015525_00083 - 239 0.056 13.7 1.2 2 2 0.011 51 4.2 0.0 10 20 144 156 131 162 0.67 Domain of unknown function (DUF1856) Toprim_2 PF13155.6 90 pGCA_000015525_00084 - 417 1.8e-12 47.5 0.8 1 2 0.22 1.3e+03 -0.1 0.1 53 83 183 213 182 219 0.77 Toprim-like Toprim_2 PF13155.6 90 pGCA_000015525_00084 - 417 1.8e-12 47.5 0.8 2 2 1.5e-15 8.8e-12 45.3 0.1 1 90 223 314 223 314 0.89 Toprim-like DUF3991 PF13154.6 76 pGCA_000015525_00084 - 417 7.4e-10 39.1 0.2 1 1 3.9e-13 2.3e-09 37.4 0.2 4 72 128 210 125 215 0.82 Protein of unknown function (DUF3991) Sushi_2 PF09014.10 88 pGCA_000015525_00084 - 417 0.064 13.1 0.1 1 2 1.5 9.2e+03 -3.4 0.0 36 43 70 77 64 90 0.67 Beta-2-glycoprotein-1 fifth domain Sushi_2 PF09014.10 88 pGCA_000015525_00084 - 417 0.064 13.1 0.1 2 2 5.1e-05 0.3 11.0 0.0 31 80 257 309 249 315 0.80 Beta-2-glycoprotein-1 fifth domain YsaB PF13983.6 75 pGCA_000015525_00086 - 114 0.1 12.9 0.1 1 2 0.15 2.7e+03 -1.3 0.0 8 32 5 29 2 32 0.77 YsaB-like lipoprotein YsaB PF13983.6 75 pGCA_000015525_00086 - 114 0.1 12.9 0.1 2 2 1.9e-05 0.34 11.2 0.1 24 50 51 79 48 102 0.83 YsaB-like lipoprotein Cytochrom_B_C PF00032.17 103 pGCA_000015525_00090 - 136 2.6 8.4 10.0 1 1 0.00046 8.2 6.8 10.0 19 80 62 123 5 134 0.86 Cytochrome b(C-terminal)/b6/petD CpXC PF14353.6 118 pGCA_000015525_00091 - 143 0.0096 16.0 2.4 1 1 1.3e-06 0.012 15.7 2.4 2 62 9 75 8 140 0.72 CpXC protein A2L_zn_ribbon PF08792.10 33 pGCA_000015525_00091 - 143 0.42 10.4 5.4 1 2 0.0036 32 4.4 0.4 2 11 6 15 5 19 0.78 A2L zinc ribbon domain A2L_zn_ribbon PF08792.10 33 pGCA_000015525_00091 - 143 0.42 10.4 5.4 2 2 0.0003 2.7 7.8 0.6 5 15 46 56 44 59 0.89 A2L zinc ribbon domain Baculo_p74 PF04583.12 216 pGCA_000015525_00092 - 61 0.024 14.1 0.3 1 1 2.8e-06 0.025 14.1 0.3 117 150 9 42 6 59 0.87 Baculoviridae p74 conserved region RasGEF PF00617.19 177 pGCA_000015525_00092 - 61 0.044 14.0 0.0 1 1 4.9e-06 0.044 14.0 0.0 46 82 11 47 1 56 0.87 RasGEF domain TetR_C_3 PF08362.11 143 pGCA_000015525_00095 - 121 0.019 14.9 0.0 1 1 3e-06 0.027 14.4 0.0 94 134 58 98 47 105 0.86 YcdC-like protein, C-terminal region Arteri_env PF01606.16 214 pGCA_000015525_00095 - 121 0.055 13.3 0.0 1 1 6.6e-06 0.059 13.2 0.0 94 152 20 82 8 109 0.71 Arterivirus envelope protein Sipho_tail PF05709.11 255 pGCA_000015525_00096 - 111 0.0044 16.5 1.1 1 1 6.3e-07 0.0056 16.1 1.1 5 63 37 95 36 110 0.90 Phage tail protein NRD1_2 PF01995.16 238 pGCA_000015525_00096 - 111 0.0063 15.8 1.0 1 2 0.27 2.4e+03 -2.5 0.0 9 22 27 40 20 51 0.73 NrpR regulatory domains NRD1 and 2 NRD1_2 PF01995.16 238 pGCA_000015525_00096 - 111 0.0063 15.8 1.0 2 2 8.9e-07 0.008 15.5 0.6 10 64 56 110 47 111 0.88 NrpR regulatory domains NRD1 and 2 DUF3755 PF12579.8 34 pGCA_000015525_00097 - 120 0.054 13.2 0.0 1 1 1.3e-05 0.11 12.1 0.0 6 20 84 98 83 115 0.86 Protein of unknown function (DUF3755) Pox_polyA_pol_N PF12630.7 108 pGCA_000015525_00097 - 120 0.53 10.7 0.1 1 2 5.9e-05 0.53 10.7 0.1 24 64 12 52 3 64 0.84 Poxvirus poly(A) polymerase N-terminal domain Pox_polyA_pol_N PF12630.7 108 pGCA_000015525_00097 - 120 0.53 10.7 0.1 2 2 0.14 1.3e+03 -0.2 5.2 27 68 73 113 53 120 0.78 Poxvirus poly(A) polymerase N-terminal domain PemK_toxin PF02452.17 111 pGCA_000015525_00098 - 134 1.4e-07 31.9 0.0 1 1 2.1e-11 1.9e-07 31.4 0.0 2 109 28 130 27 132 0.87 PemK-like, MazF-like toxin of type II toxin-antitoxin system DWNN PF08783.11 74 pGCA_000015525_00098 - 134 3.1 8.1 7.2 1 2 0.3 2.7e+03 -1.2 0.2 27 32 22 27 3 35 0.57 DWNN domain DWNN PF08783.11 74 pGCA_000015525_00098 - 134 3.1 8.1 7.2 2 2 3.8e-05 0.34 11.2 2.5 2 50 83 127 82 134 0.84 DWNN domain Relaxase PF03432.14 242 pGCA_000015525_00100 - 523 3.9e-09 36.5 18.3 1 4 0.28 1.7e+03 -1.6 0.1 109 109 45 45 2 82 0.50 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_000015525_00100 - 523 3.9e-09 36.5 18.3 2 4 6.5e-13 3.9e-09 36.5 18.3 42 232 103 305 66 312 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_000015525_00100 - 523 3.9e-09 36.5 18.3 3 4 0.45 2.7e+03 -2.3 5.4 109 180 282 345 280 394 0.59 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_000015525_00100 - 523 3.9e-09 36.5 18.3 4 4 0.2 1.2e+03 -1.1 6.4 113 182 396 466 374 479 0.72 Relaxase/Mobilisation nuclease domain MobA_MobL PF03389.15 222 pGCA_000015525_00100 - 523 0.015 15.0 8.8 1 1 9.6e-06 0.058 13.1 8.8 62 194 109 279 103 354 0.70 MobA/MobL family Jnk-SapK_ap_N PF09744.9 156 pGCA_000015525_00100 - 523 3.6 7.8 20.2 1 2 0.00025 1.5 9.0 9.3 46 155 251 363 244 364 0.93 JNK_SAPK-associated protein-1 Jnk-SapK_ap_N PF09744.9 156 pGCA_000015525_00100 - 523 3.6 7.8 20.2 2 2 0.0082 49 4.1 3.1 94 147 401 456 372 475 0.55 JNK_SAPK-associated protein-1 VirB3 PF05101.13 84 pGCA_000015525_00102 - 80 0.0033 17.6 0.1 1 1 6.3e-07 0.0038 17.4 0.1 8 71 9 71 3 78 0.85 Type IV secretory pathway, VirB3-like protein Na_K-ATPase PF00287.18 284 pGCA_000015525_00102 - 80 1.1 8.4 3.8 1 1 0.0002 1.2 8.3 3.8 19 62 12 61 2 66 0.73 Sodium / potassium ATPase beta chain TMCO5 PF14992.6 275 pGCA_000015525_00102 - 80 5.3 6.5 4.6 1 1 0.00088 5.3 6.5 4.6 212 241 34 63 4 71 0.79 TMCO5 family CagE_TrbE_VirB PF03135.14 206 pGCA_000015525_00103 - 822 3.8e-28 99.0 7.4 1 3 2.6e-31 3.8e-28 99.0 7.4 2 206 211 409 210 409 0.93 CagE, TrbE, VirB family, component of type IV transporter system CagE_TrbE_VirB PF03135.14 206 pGCA_000015525_00103 - 822 3.8e-28 99.0 7.4 2 3 0.25 3.7e+02 1.1 0.1 107 143 537 573 525 577 0.86 CagE, TrbE, VirB family, component of type IV transporter system CagE_TrbE_VirB PF03135.14 206 pGCA_000015525_00103 - 822 3.8e-28 99.0 7.4 3 3 0.21 3.2e+02 1.3 0.1 79 122 729 772 718 777 0.82 CagE, TrbE, VirB family, component of type IV transporter system TrwB_AAD_bind PF10412.9 386 pGCA_000015525_00103 - 822 7.6e-08 31.7 0.3 1 2 6.6e-05 0.099 11.5 0.1 16 38 467 489 462 511 0.89 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_000015525_00103 - 822 7.6e-08 31.7 0.3 2 2 1e-06 0.0015 17.5 0.0 224 332 637 749 625 794 0.71 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 362 pGCA_000015525_00103 - 822 2e-06 27.0 0.1 1 1 6.8e-09 1e-05 24.7 0.0 20 193 465 622 453 654 0.79 AAA-like domain FtsK_SpoIIIE PF01580.18 243 pGCA_000015525_00103 - 822 1.3e-05 24.6 0.0 1 2 3.1e-08 4.7e-05 22.9 0.0 12 63 433 490 430 494 0.86 FtsK/SpoIIIE family FtsK_SpoIIIE PF01580.18 243 pGCA_000015525_00103 - 822 1.3e-05 24.6 0.0 2 2 1.5 2.3e+03 -2.3 0.1 110 183 561 649 548 687 0.48 FtsK/SpoIIIE family DUF87 PF01935.17 227 pGCA_000015525_00103 - 822 0.0049 17.0 14.1 1 3 2.2 3.3e+03 -2.1 4.7 100 182 121 199 87 237 0.68 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_000015525_00103 - 822 0.0049 17.0 14.1 2 3 2.3e-05 0.034 14.2 0.0 25 52 468 494 465 507 0.86 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_000015525_00103 - 822 0.0049 17.0 14.1 3 3 0.0018 2.6 8.1 0.7 111 214 532 632 513 647 0.80 Helicase HerA, central domain AAA_22 PF13401.6 137 pGCA_000015525_00103 - 822 0.019 15.3 0.0 1 1 4.5e-05 0.068 13.5 0.0 5 29 466 490 462 579 0.82 AAA domain PduV-EutP PF10662.9 143 pGCA_000015525_00103 - 822 0.029 14.1 0.3 1 2 6.1 9.1e+03 -3.7 0.0 63 84 120 141 115 144 0.77 Ethanolamine utilisation - propanediol utilisation PduV-EutP PF10662.9 143 pGCA_000015525_00103 - 822 0.029 14.1 0.3 2 2 6.5e-05 0.096 12.4 0.1 3 28 468 493 466 517 0.89 Ethanolamine utilisation - propanediol utilisation Sigma54_activ_2 PF14532.6 138 pGCA_000015525_00103 - 822 0.039 14.1 0.3 1 3 0.074 1.1e+02 2.9 0.0 82 117 332 366 297 385 0.86 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 138 pGCA_000015525_00103 - 822 0.039 14.1 0.3 2 3 0.0054 8 6.6 0.0 26 57 471 503 467 515 0.85 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 138 pGCA_000015525_00103 - 822 0.039 14.1 0.3 3 3 1.1 1.6e+03 -0.9 0.0 48 84 766 803 714 812 0.63 Sigma-54 interaction domain ABC_tran PF00005.27 137 pGCA_000015525_00103 - 822 0.048 14.2 4.9 1 3 0.37 5.5e+02 1.0 0.2 57 111 120 194 83 237 0.64 ABC transporter ABC_tran PF00005.27 137 pGCA_000015525_00103 - 822 0.048 14.2 4.9 2 3 3.8e-05 0.058 13.9 0.3 11 36 466 491 463 638 0.76 ABC transporter ABC_tran PF00005.27 137 pGCA_000015525_00103 - 822 0.048 14.2 4.9 3 3 7.5 1.1e+04 -3.2 0.0 55 80 731 765 718 820 0.52 ABC transporter AAA_29 PF13555.6 61 pGCA_000015525_00103 - 822 0.052 13.3 0.0 1 1 7.9e-05 0.12 12.2 0.0 20 38 464 482 453 492 0.83 P-loop containing region of AAA domain AAA_18 PF13238.6 130 pGCA_000015525_00103 - 822 0.065 13.8 0.0 1 2 0.00037 0.56 10.8 0.0 3 37 471 506 470 580 0.72 AAA domain AAA_18 PF13238.6 130 pGCA_000015525_00103 - 822 0.065 13.8 0.0 2 2 4.8 7.2e+03 -2.5 0.0 16 39 745 765 725 806 0.75 AAA domain NACHT PF05729.12 166 pGCA_000015525_00103 - 822 0.1 12.5 0.4 1 3 0.37 5.6e+02 0.4 0.0 13 48 134 166 134 226 0.79 NACHT domain NACHT PF05729.12 166 pGCA_000015525_00103 - 822 0.1 12.5 0.4 2 3 2.9 4.4e+03 -2.6 0.0 119 164 347 391 322 393 0.69 NACHT domain NACHT PF05729.12 166 pGCA_000015525_00103 - 822 0.1 12.5 0.4 3 3 0.0011 1.6 8.6 0.0 4 24 470 490 468 497 0.85 NACHT domain W2 PF02020.18 79 pGCA_000465235_00001 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pGCA_000465235_00001 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pGCA_000465235_00001 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 pGCA_000465235_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pGCA_000465235_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pGCA_000465235_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pGCA_000465235_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain DHHC PF01529.20 134 pGCA_000465235_00004 - 107 4.1 7.5 13.1 1 1 0.0014 13 5.9 13.1 29 78 15 64 9 105 0.49 DHHC palmitoyltransferase DUF4133 PF13571.6 91 pGCA_000465235_00004 - 107 5.6 7.4 7.4 1 1 0.00084 7.5 7.0 6.7 19 65 34 80 30 92 0.77 Domain of unknown function (DUF4133) DHHC PF01529.20 134 pGCA_000465235_00006 - 89 0.033 14.3 6.3 1 1 4.4e-06 0.039 14.0 6.3 53 119 2 67 1 74 0.81 DHHC palmitoyltransferase T4SS_CagC PF16943.5 107 pGCA_000465235_00006 - 89 0.046 13.9 0.2 1 1 6.2e-06 0.056 13.6 0.2 45 99 2 56 1 65 0.72 Cag pathogenicity island, type IV secretory system DUF4044 PF13253.6 33 pGCA_000465235_00008 - 189 0.035 13.6 0.8 1 1 1.4e-05 0.062 12.8 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pGCA_000465235_00008 - 189 0.065 13.0 0.1 1 1 2e-05 0.091 12.5 0.1 81 149 12 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction DUF2070 PF09843.9 564 pGCA_000465235_00008 - 189 0.072 11.4 1.1 1 1 2.4e-05 0.11 10.8 1.1 127 214 24 108 11 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pGCA_000465235_00008 - 189 9.1 6.0 13.6 1 2 3.3e-05 0.15 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pGCA_000465235_00008 - 189 9.1 6.0 13.6 2 2 1.3 5.9e+03 -3.2 0.6 118 133 152 167 144 179 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pGCA_000465235_00009 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pGCA_000465235_00009 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) adh_short PF00106.25 195 pGCA_000465235_00010 - 177 0.034 13.6 0.0 1 1 4.8e-06 0.043 13.3 0.0 17 109 60 162 52 170 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pGCA_000465235_00010 - 177 0.1 12.9 0.0 1 1 2e-05 0.18 12.1 0.0 21 78 75 129 61 138 0.81 Mur ligase family, glutamate ligase domain RHH_7 PF16777.5 74 pGCA_000465235_00011 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 pGCA_000465235_00011 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal SNF2_N PF00176.23 350 pGCA_000465235_00012 - 1931 3.7e-16 58.8 2.9 1 3 1.3e-19 4.5e-16 58.5 0.1 57 245 1017 1272 935 1313 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_000465235_00012 - 1931 3.7e-16 58.8 2.9 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_000465235_00012 - 1931 3.7e-16 58.8 2.9 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1875 1923 1845 1924 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pGCA_000465235_00012 - 1931 7.5e-08 32.6 8.9 1 2 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_000465235_00012 - 1931 7.5e-08 32.6 8.9 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1798 1909 1724 1931 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pGCA_000465235_00012 - 1931 9.7e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pGCA_000465235_00012 - 1931 9.7e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pGCA_000465235_00012 - 1931 9.5e-06 25.5 2.0 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 pGCA_000465235_00012 - 1931 9.5e-06 25.5 2.0 2 2 0.12 4.2e+02 0.6 0.0 119 150 1882 1915 1827 1930 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 pGCA_000465235_00012 - 1931 2.5e-05 24.7 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pGCA_000465235_00012 - 1931 2.5e-05 24.7 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 pGCA_000465235_00013 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 pGCA_000465235_00013 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 pGCA_000465235_00013 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 pGCA_000465235_00013 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) Acetyltransf_7 PF13508.7 76 pGCA_000465235_00014 - 166 0.00015 22.1 0.0 1 1 1e-07 0.00031 21.1 0.0 29 75 12 75 2 76 0.60 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pGCA_000465235_00014 - 166 0.003 17.8 0.0 1 1 2.5e-06 0.0073 16.5 0.0 65 92 14 41 6 74 0.80 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 pGCA_000465235_00014 - 166 0.0052 16.8 0.3 1 1 2.7e-06 0.0082 16.2 0.3 24 67 103 146 86 150 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PHM7_cyt PF14703.6 176 pGCA_000465235_00014 - 166 0.095 12.9 0.2 1 1 5.2e-05 0.15 12.2 0.2 30 85 98 153 86 159 0.81 Cytosolic domain of 10TM putative phosphate transporter Acetyltransf_10 PF13673.7 127 pGCA_000465235_00014 - 166 0.12 12.4 0.0 1 1 0.00011 0.33 10.9 0.0 55 84 13 42 4 84 0.79 Acetyltransferase (GNAT) domain Spc24 PF08286.11 105 pGCA_000465235_00014 - 166 0.39 11.0 3.2 1 2 0.00045 1.3 9.3 0.2 54 89 63 108 31 115 0.67 Spc24 subunit of Ndc80 Spc24 PF08286.11 105 pGCA_000465235_00014 - 166 0.39 11.0 3.2 2 2 0.04 1.2e+02 3.0 0.7 12 43 111 142 101 152 0.69 Spc24 subunit of Ndc80 DUF3913 PF13052.6 57 pGCA_000465235_00015 - 82 0.046 14.0 0.3 1 1 4.2e-06 0.076 13.3 0.2 29 53 35 58 28 62 0.76 Protein of unknown function (DUF3913) Relaxase PF03432.14 242 pGCA_000465235_00016 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_000465235_00016 - 462 4.7e-10 39.5 7.4 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pGCA_000465235_00017 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_000465235_00017 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_000465235_00017 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pGCA_000465235_00017 - 183 0.046 13.8 2.1 1 1 1.7e-05 0.063 13.4 1.5 55 131 19 103 9 124 0.70 Stage III sporulation protein AB (spore_III_AB) NLRC4_HD PF17889.1 107 pGCA_000465235_00017 - 183 0.18 12.1 5.5 1 2 0.00027 0.98 9.8 1.8 14 92 6 84 3 98 0.81 NLRC4 helical domain NLRC4_HD PF17889.1 107 pGCA_000465235_00017 - 183 0.18 12.1 5.5 2 2 0.016 56 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 pGCA_000465235_00017 - 183 0.41 10.7 8.1 1 3 0.32 1.1e+03 -0.3 0.1 40 55 12 27 4 54 0.75 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_000465235_00017 - 183 0.41 10.7 8.1 2 3 0.011 39 4.4 0.6 11 46 56 91 51 97 0.87 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_000465235_00017 - 183 0.41 10.7 8.1 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pGCA_000465235_00017 - 183 0.42 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pGCA_000465235_00017 - 183 0.42 10.9 6.2 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 pGCA_000465235_00018 - 99 1.1 9.1 11.3 1 2 4.4e-05 0.26 11.1 5.3 18 48 6 36 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pGCA_000465235_00018 - 99 1.1 9.1 11.3 2 2 0.074 4.4e+02 0.7 0.1 97 112 60 75 46 85 0.67 CdvA-like coiled-coil domain ESP PF16590.5 91 pGCA_000465235_00018 - 99 1.4 9.3 6.9 1 2 0.025 1.5e+02 2.7 1.5 26 73 3 47 2 53 0.62 Exocrine gland-secreting peptide ESP PF16590.5 91 pGCA_000465235_00018 - 99 1.4 9.3 6.9 2 2 5.2e-05 0.31 11.3 1.2 26 59 43 79 42 99 0.74 Exocrine gland-secreting peptide DUF3671 PF12420.8 115 pGCA_000465235_00018 - 99 1.7 8.7 15.5 1 2 0.024 1.4e+02 2.6 3.6 24 49 17 42 3 46 0.72 Protein of unknown function DUF3671 PF12420.8 115 pGCA_000465235_00018 - 99 1.7 8.7 15.5 2 2 2.6e-05 0.15 12.1 4.1 4 42 59 95 56 98 0.85 Protein of unknown function Ribonuc_2-5A PF06479.12 127 pGCA_000465235_00022 - 152 0.065 13.4 5.2 1 1 2.2e-05 0.2 11.9 5.2 38 91 57 113 1 119 0.63 Ribonuclease 2-5A DUF5311 PF17238.2 194 pGCA_000465235_00022 - 152 0.065 13.1 0.1 1 1 1e-05 0.089 12.7 0.1 88 125 72 111 46 123 0.81 Family of unknown function (DUF5311) Toprim_3 PF13362.6 95 pGCA_000465235_00023 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pGCA_000465235_00023 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pGCA_000465235_00023 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pGCA_000465235_00023 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_000465235_00023 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pGCA_000465235_00024 - 97 0.007 16.3 0.0 1 1 1.7e-06 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) nec1 PF10379.9 184 pGCA_000465235_00024 - 97 0.067 12.7 0.0 1 1 1.1e-05 0.099 12.1 0.0 65 105 56 94 35 96 0.75 Virulence protein nec1 Sdh_cyt PF01127.22 121 pGCA_000465235_00025 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 pGCA_000465235_00025 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 pGCA_000465235_00025 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pGCA_000465235_00027 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pGCA_000465235_00028 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pGCA_000465235_00029 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pGCA_000465235_00029 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_000465235_00029 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_000465235_00029 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_000465235_00029 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pGCA_000465235_00029 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 pGCA_000465235_00029 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pGCA_000465235_00029 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_000465235_00029 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pGCA_000465235_00029 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pGCA_000465235_00029 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pGCA_000465235_00029 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pGCA_000465235_00029 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 pGCA_000465235_00030 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pGCA_000465235_00030 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_000465235_00030 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_000465235_00030 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pGCA_000465235_00030 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_000465235_00030 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_000465235_00030 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain CRISPR_Cas2 PF09827.9 76 pGCA_000465235_00031 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pGCA_000465235_00031 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 TrbC PF04956.13 99 pGCA_000465235_00033 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pGCA_000465235_00033 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pGCA_000465235_00034 - 922 3.1e-51 174.4 0.4 1 1 7.9e-55 7.1e-51 173.2 0.4 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pGCA_000465235_00034 - 922 3.6e-21 75.2 0.8 1 1 6.9e-25 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein Phage_pRha PF09669.10 88 pGCA_000465235_00035 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 pGCA_000465235_00035 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 pGCA_000465235_00035 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) PBECR2 PF18810.1 119 pGCA_000465235_00036 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 SSB PF00436.25 104 pGCA_000465235_00037 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pGCA_000465235_00038 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pGCA_000465235_00038 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pGCA_000465235_00038 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pGCA_000465235_00038 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pGCA_000465235_00038 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pGCA_000465235_00038 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pGCA_000465235_00038 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pGCA_000465235_00039 - 329 1.7e-28 100.4 13.1 1 1 5.2e-32 2.3e-28 99.9 13.1 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pGCA_000465235_00039 - 329 0.0035 17.5 0.5 1 2 0.27 1.2e+03 -0.3 0.0 30 54 134 158 120 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pGCA_000465235_00039 - 329 0.0035 17.5 0.5 2 2 4.7e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 pGCA_000465235_00039 - 329 0.018 15.7 0.8 1 2 1.3 6e+03 -2.1 0.0 55 70 124 139 101 163 0.57 von Willebrand factor type A domain VWA_2 PF13519.6 107 pGCA_000465235_00039 - 329 0.018 15.7 0.8 2 2 8.6e-06 0.039 14.6 0.2 31 84 208 270 197 295 0.83 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 pGCA_000465235_00039 - 329 0.48 11.1 11.5 1 2 0.042 1.9e+02 2.7 0.8 49 135 108 145 95 182 0.47 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pGCA_000465235_00039 - 329 0.48 11.1 11.5 2 2 8.9e-05 0.4 11.4 4.6 49 117 225 307 205 328 0.69 Apoptosis antagonizing transcription factor TrbL PF04610.14 215 pGCA_000465235_00040 - 331 2.1e-30 106.1 33.3 1 2 4.7e-34 2.1e-30 106.1 33.3 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pGCA_000465235_00040 - 331 2.1e-30 106.1 33.3 2 2 0.59 2.6e+03 -2.1 0.1 58 88 289 325 260 330 0.47 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pGCA_000465235_00040 - 331 0.069 13.0 1.0 1 2 0.54 2.4e+03 -1.6 0.1 39 51 70 82 61 114 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pGCA_000465235_00040 - 331 0.069 13.0 1.0 2 2 5e-05 0.23 11.3 0.1 37 81 243 287 222 298 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 pGCA_000465235_00040 - 331 0.17 11.9 0.0 1 1 6.8e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) AIM3 PF17096.5 88 pGCA_000465235_00040 - 331 0.3 12.1 6.0 1 1 0.00013 0.57 11.1 6.0 9 38 299 328 284 330 0.89 Altered inheritance of mitochondria protein 3 La_HTH_kDCL PF18177.1 90 pGCA_000465235_00041 - 54 0.2 12.0 0.0 1 1 1.2e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain VirB8 PF04335.13 214 pGCA_000465235_00042 - 219 1.6e-52 178.5 0.5 1 1 2e-56 1.8e-52 178.3 0.5 4 214 10 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pGCA_000465235_00042 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pGCA_000465235_00043 - 298 9.6e-56 188.8 1.9 1 1 8.4e-60 1.5e-55 188.2 1.9 2 211 32 273 31 273 0.92 Conjugal transfer protein TrbI PF03743.14 187 pGCA_000465235_00044 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.5e+03 -3.4 0.3 136 154 141 166 120 174 0.53 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pGCA_000465235_00044 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pGCA_000465235_00044 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease T2SSE PF00437.20 273 pGCA_000465235_00045 - 339 6.9e-55 186.0 0.0 1 1 1.4e-57 8.1e-55 185.8 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pGCA_000465235_00045 - 339 7.2e-05 23.3 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_000465235_00045 - 339 0.00012 21.6 0.0 1 1 3.2e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pGCA_000465235_00045 - 339 0.00028 20.4 0.0 1 1 9.2e-07 0.00052 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pGCA_000465235_00045 - 339 0.0014 18.9 0.0 1 1 4.7e-06 0.0026 18.0 0.0 5 56 160 221 155 244 0.72 AAA domain DEAD PF00270.29 176 pGCA_000465235_00045 - 339 0.0014 18.4 0.0 1 1 4.1e-06 0.0023 17.7 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pGCA_000465235_00045 - 339 0.0026 17.5 0.2 1 1 9.7e-06 0.0054 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pGCA_000465235_00045 - 339 0.0035 17.3 0.0 1 1 1.3e-05 0.0073 16.3 0.0 10 45 152 186 141 194 0.74 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pGCA_000465235_00045 - 339 0.0055 15.7 0.0 1 1 1.4e-05 0.0079 15.1 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pGCA_000465235_00045 - 339 0.0073 16.2 0.0 1 1 2.3e-05 0.013 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pGCA_000465235_00045 - 339 0.0088 15.4 0.0 1 1 2.6e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pGCA_000465235_00045 - 339 0.0091 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 305 0.85 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pGCA_000465235_00045 - 339 0.018 15.1 0.0 1 1 6.4e-05 0.036 14.2 0.0 27 48 164 185 142 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 pGCA_000465235_00045 - 339 0.021 13.8 0.0 1 1 6.2e-05 0.035 13.0 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 pGCA_000465235_00045 - 339 0.023 14.7 0.0 1 1 9.6e-05 0.054 13.5 0.0 5 50 147 186 135 248 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 pGCA_000465235_00045 - 339 0.024 14.4 0.0 1 1 9.2e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 pGCA_000465235_00045 - 339 0.026 14.2 0.0 1 1 9.8e-05 0.055 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pGCA_000465235_00045 - 339 0.031 13.8 0.0 1 1 0.00011 0.061 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 pGCA_000465235_00045 - 339 0.035 14.2 0.1 1 1 0.00019 0.11 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 pGCA_000465235_00045 - 339 0.04 13.7 0.0 1 1 0.00011 0.064 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 pGCA_000465235_00045 - 339 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 pGCA_000465235_00045 - 339 0.046 13.0 0.0 1 1 0.00015 0.082 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin PRK PF00485.18 197 pGCA_000465235_00045 - 339 0.058 13.1 0.0 1 1 0.0002 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pGCA_000465235_00045 - 339 0.065 11.9 0.0 1 1 0.00016 0.092 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pGCA_000465235_00045 - 339 0.075 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pGCA_000465235_00045 - 339 0.089 12.7 0.0 1 1 0.00036 0.2 11.5 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pGCA_000465235_00045 - 339 0.089 12.7 0.4 1 1 0.00039 0.22 11.5 0.3 71 102 149 179 129 220 0.81 Microtubule binding NTPase_1 PF03266.15 168 pGCA_000465235_00045 - 339 0.11 12.4 0.1 1 1 0.00042 0.23 11.3 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 pGCA_000465235_00045 - 339 0.12 13.0 0.0 1 2 8.1 4.6e+03 -1.9 0.0 25 60 14 49 4 61 0.76 AAA domain AAA_18 PF13238.6 130 pGCA_000465235_00045 - 339 0.12 13.0 0.0 2 2 0.0007 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 pGCA_000465235_00045 - 339 0.15 11.7 0.0 1 1 0.00043 0.24 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pGCA_000465235_00045 - 339 0.15 11.7 0.0 1 1 0.00044 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pGCA_000465235_00045 - 339 0.38 11.2 4.1 1 2 2.7 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 pGCA_000465235_00045 - 339 0.38 11.2 4.1 2 2 0.00068 0.38 11.2 1.3 22 37 163 178 160 184 0.87 AAA domain Carbam_trans_N PF02543.15 338 pGCA_000465235_00046 - 267 0.053 13.2 0.0 1 1 4.1e-06 0.073 12.7 0.0 195 313 117 236 74 243 0.86 Carbamoyltransferase N-terminus T4SS-DNA_transf PF02534.14 469 pGCA_000465235_00047 - 603 8.3e-104 348.0 0.1 1 1 3.2e-107 1.1e-103 347.5 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_000465235_00047 - 603 3.5e-24 85.2 0.0 1 1 1.9e-27 6.8e-24 84.3 0.0 2 125 406 528 405 529 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pGCA_000465235_00047 - 603 3.2e-15 55.9 0.0 1 2 2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_000465235_00047 - 603 3.2e-15 55.9 0.0 2 2 1.6e-13 5.8e-10 38.6 0.0 187 369 347 531 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 pGCA_000465235_00047 - 603 0.17 11.9 0.1 1 1 8.3e-05 0.3 11.2 0.1 37 93 9 87 3 100 0.78 Putative Actinobacterial Holin-X, holin superfamily III ECF_trnsprt PF12822.7 172 pGCA_000465235_00047 - 603 1.2 9.2 8.3 1 1 0.00056 2 8.5 8.3 101 168 4 79 1 81 0.85 ECF transporter, substrate-specific component Cag12 PF13117.6 97 pGCA_000465235_00048 - 143 1.4e-16 60.7 0.3 1 1 2.1e-20 1.9e-16 60.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pGCA_000465235_00048 - 143 0.06 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 pGCA_000465235_00049 - 252 4.1e-38 130.8 2.0 1 1 2.9e-42 5.3e-38 130.4 2.0 1 154 25 190 25 192 0.88 TrbM PRELI PF04707.14 157 pGCA_000465235_00050 - 265 0.044 13.6 0.3 1 2 0.26 2.4e+03 -1.8 0.1 107 133 23 45 5 72 0.49 PRELI-like family PRELI PF04707.14 157 pGCA_000465235_00050 - 265 0.044 13.6 0.3 2 2 4.9e-06 0.044 13.6 0.3 96 155 83 147 78 149 0.87 PRELI-like family TACC_C PF05010.14 201 pGCA_000465235_00050 - 265 0.92 9.3 9.3 1 2 0.00027 2.4 7.9 8.2 14 124 2 111 1 135 0.79 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 pGCA_000465235_00050 - 265 0.92 9.3 9.3 2 2 0.035 3.2e+02 1.0 1.1 8 45 100 139 94 148 0.70 Transforming acidic coiled-coil-containing protein (TACC), C-terminal CdhD PF03599.16 386 pGCA_000465235_00051 - 246 0.002 16.9 0.0 1 1 5.3e-07 0.0031 16.3 0.0 269 358 39 127 30 136 0.86 CO dehydrogenase/acetyl-CoA synthase delta subunit Pox_RNA_pol PF03293.14 160 pGCA_000465235_00051 - 246 0.012 15.3 0.9 1 1 4.5e-06 0.027 14.2 0.9 35 158 20 138 7 140 0.83 Poxvirus DNA-directed RNA polymerase, 18 kD subunit Redoxin PF08534.10 147 pGCA_000465235_00051 - 246 0.059 13.1 0.5 1 2 0.079 4.7e+02 0.4 0.0 117 146 49 76 31 77 0.79 Redoxin Redoxin PF08534.10 147 pGCA_000465235_00051 - 246 0.059 13.1 0.5 2 2 7.9e-05 0.47 10.2 0.1 49 76 184 213 178 230 0.79 Redoxin DUF1461 PF07314.11 189 pGCA_000465235_00052 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) Topoisom_bac PF01131.20 413 pGCA_000465235_00053 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pGCA_000465235_00053 - 730 6.3e-12 45.6 2.6 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pGCA_000465235_00053 - 730 6.3e-12 45.6 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pGCA_000465235_00053 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pGCA_000465235_00053 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pGCA_000465235_00053 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_000465235_00053 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_000465235_00053 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pGCA_000465235_00053 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pGCA_000465235_00053 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pGCA_000465235_00053 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pGCA_000465235_00053 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pGCA_000465235_00053 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pGCA_000465235_00053 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pGCA_000465235_00053 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pGCA_000465235_00053 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pGCA_000465235_00053 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pGCA_000465235_00053 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pGCA_000465235_00053 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pGCA_000465235_00053 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pGCA_000465235_00053 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pGCA_000465235_00053 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_000465235_00053 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_000465235_00053 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pGCA_000465235_00053 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pGCA_000465235_00053 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pGCA_000465235_00053 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_000465235_00053 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pGCA_000465235_00053 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pGCA_000465235_00053 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pGCA_000465235_00053 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pGCA_000465235_00053 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pGCA_000465235_00053 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pGCA_000465235_00053 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pGCA_000465235_00054 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pGCA_000465235_00054 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain APH PF01636.23 240 pGCA_000465235_00056 - 306 5.8e-22 78.8 0.0 1 1 2.1e-25 7.5e-22 78.4 0.0 13 230 39 256 27 265 0.75 Phosphotransferase enzyme family RIO1 PF01163.22 188 pGCA_000465235_00056 - 306 2.1e-06 27.5 0.1 1 2 0.00064 2.3 7.8 0.0 47 111 52 117 46 131 0.76 RIO1 family RIO1 PF01163.22 188 pGCA_000465235_00056 - 306 2.1e-06 27.5 0.1 2 2 5.8e-07 0.0021 17.7 0.1 97 154 165 223 149 253 0.81 RIO1 family DUF1679 PF07914.11 414 pGCA_000465235_00056 - 306 0.00034 19.6 0.1 1 2 1 3.7e+03 -3.6 0.0 113 142 60 89 55 92 0.78 Protein of unknown function (DUF1679) DUF1679 PF07914.11 414 pGCA_000465235_00056 - 306 0.00034 19.6 0.1 2 2 1.6e-07 0.00056 18.9 0.0 213 318 134 238 102 253 0.70 Protein of unknown function (DUF1679) Choline_kinase PF01633.20 213 pGCA_000465235_00056 - 306 0.00076 19.1 0.2 1 2 5.9e-07 0.0021 17.7 0.1 21 171 61 218 46 219 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 pGCA_000465235_00056 - 306 0.00076 19.1 0.2 2 2 0.51 1.8e+03 -1.7 0.0 6 25 249 268 247 271 0.89 Choline/ethanolamine kinase EcKinase PF02958.20 294 pGCA_000465235_00056 - 306 0.0095 15.3 0.1 1 1 3.7e-06 0.013 14.8 0.1 189 270 162 243 121 262 0.65 Ecdysteroid kinase GTP_EFTU PF00009.27 194 pGCA_000465235_00057 - 639 5.6e-59 198.9 0.3 1 1 3.9e-62 7.8e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pGCA_000465235_00057 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pGCA_000465235_00057 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pGCA_000465235_00057 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pGCA_000465235_00057 - 639 2.1e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pGCA_000465235_00057 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pGCA_000465235_00057 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pGCA_000465235_00057 - 639 0.0091 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pGCA_000465235_00057 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pGCA_000465235_00057 - 639 0.05 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family CPSF_A PF03178.15 322 pGCA_000465235_00059 - 95 0.034 13.4 0.0 1 1 9.6e-06 0.034 13.4 0.0 248 286 57 94 23 95 0.80 CPSF A subunit region ATPase PF06745.13 231 pGCA_000465235_00059 - 95 0.048 13.0 0.2 1 1 1.4e-05 0.049 13.0 0.2 73 152 7 87 1 94 0.74 KaiC TipAS PF07739.13 117 pGCA_000465235_00059 - 95 0.061 13.9 1.5 1 1 0.00033 1.2 9.7 1.9 27 96 5 80 1 92 0.80 TipAS antibiotic-recognition domain 3HCDH PF00725.22 97 pGCA_000465235_00059 - 95 0.091 13.4 0.2 1 1 3.8e-05 0.14 12.8 0.2 7 65 36 93 33 95 0.91 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DUF4942 PF13708.6 199 pGCA_000465235_00059 - 95 0.15 12.0 0.0 1 1 7.1e-05 0.26 11.3 0.0 22 74 36 87 33 93 0.88 Domain of unknown function (DUF4942) PNP_UDP_1 PF01048.20 234 pGCA_000465235_00060 - 256 7.6e-29 100.6 0.0 1 1 4.8e-33 8.7e-29 100.4 0.0 3 219 34 237 32 255 0.86 Phosphorylase superfamily DUF4111 PF13427.6 103 pGCA_000465235_00061 - 218 3.1e-17 62.6 0.0 1 3 0.56 2.5e+03 -1.3 0.0 60 80 3 23 2 25 0.81 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pGCA_000465235_00061 - 218 3.1e-17 62.6 0.0 2 3 1.5 6.8e+03 -2.7 0.0 8 22 52 66 50 72 0.73 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pGCA_000465235_00061 - 218 3.1e-17 62.6 0.0 3 3 3.9e-20 1.8e-16 60.2 0.0 1 67 148 214 148 217 0.97 Domain of unknown function (DUF4111) Polbeta PF18765.1 93 pGCA_000465235_00061 - 218 8.7e-10 38.6 0.0 1 2 8.5e-13 3.8e-09 36.5 0.0 8 74 22 92 11 97 0.77 Polymerase beta, Nucleotidyltransferase Polbeta PF18765.1 93 pGCA_000465235_00061 - 218 8.7e-10 38.6 0.0 2 2 0.33 1.5e+03 -0.6 0.0 17 42 103 134 98 153 0.72 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 95 pGCA_000465235_00061 - 218 2.4e-06 27.8 0.0 1 1 1e-09 4.5e-06 26.9 0.0 14 76 25 89 11 107 0.76 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 199 pGCA_000465235_00061 - 218 0.00015 21.7 0.0 1 1 4.6e-08 0.00021 21.3 0.0 88 138 21 71 2 84 0.86 Adenylate cyclase NT domain DUF4111 PF13427.6 103 pGCA_000465235_00062 - 55 0.0023 18.0 0.0 1 1 1.5e-07 0.0027 17.9 0.0 69 103 13 47 7 47 0.95 Domain of unknown function (DUF4111) AAA_18 PF13238.6 130 pGCA_000465235_00063 - 181 5.7e-14 52.8 0.0 1 1 1.6e-16 7.6e-14 52.4 0.0 1 124 7 135 7 141 0.86 AAA domain CPT PF07931.12 174 pGCA_000465235_00063 - 181 3e-09 37.0 0.0 1 1 1.2e-11 5.8e-09 36.0 0.0 1 172 4 172 4 174 0.81 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 pGCA_000465235_00063 - 181 6.4e-09 36.1 0.0 1 1 1.9e-11 9.4e-09 35.6 0.0 2 136 7 144 6 146 0.81 AAA domain Zeta_toxin PF06414.12 199 pGCA_000465235_00063 - 181 1.5e-08 34.2 0.0 1 1 7.5e-11 3.6e-08 32.9 0.0 18 162 6 140 2 174 0.78 Zeta toxin AAA PF00004.29 132 pGCA_000465235_00063 - 181 8.7e-06 26.2 0.2 1 2 1.7e-07 8.1e-05 23.1 0.0 2 34 8 41 7 83 0.78 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_000465235_00063 - 181 8.7e-06 26.2 0.2 2 2 0.71 3.5e+02 1.6 0.0 104 131 108 135 56 136 0.84 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 163 pGCA_000465235_00063 - 181 0.0001 22.6 0.1 1 2 8.3e-07 0.0004 20.7 0.0 2 62 7 71 6 85 0.62 AAA domain AAA_28 PF13521.6 163 pGCA_000465235_00063 - 181 0.0001 22.6 0.1 2 2 2.6 1.2e+03 -0.4 0.1 137 137 133 133 91 177 0.52 AAA domain AAA_17 PF13207.6 136 pGCA_000465235_00063 - 181 0.0002 21.8 0.0 1 1 7.1e-07 0.00035 21.0 0.0 1 128 10 131 10 139 0.78 AAA domain AAA_22 PF13401.6 137 pGCA_000465235_00063 - 181 0.00034 20.9 0.0 1 2 2e-06 0.00099 19.4 0.0 4 33 3 32 1 84 0.83 AAA domain AAA_22 PF13401.6 137 pGCA_000465235_00063 - 181 0.00034 20.9 0.0 2 2 3.7 1.8e+03 -0.9 0.0 62 83 121 141 96 178 0.64 AAA domain AAA_14 PF13173.6 131 pGCA_000465235_00063 - 181 0.00043 20.3 0.0 1 1 1.4e-06 0.00066 19.7 0.0 2 127 4 141 3 145 0.72 AAA domain RuvB_N PF05496.12 159 pGCA_000465235_00063 - 181 0.0016 18.2 0.1 1 2 1.2e-05 0.0057 16.4 0.0 36 60 7 31 3 49 0.85 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 pGCA_000465235_00063 - 181 0.0016 18.2 0.1 2 2 3.1 1.5e+03 -1.2 0.0 96 114 111 129 104 167 0.72 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 146 pGCA_000465235_00063 - 181 0.0024 18.2 0.0 1 1 8.6e-06 0.0042 17.4 0.0 9 35 3 29 1 77 0.87 AAA domain ABC_tran PF00005.27 137 pGCA_000465235_00063 - 181 0.0031 18.0 0.1 1 1 8.5e-06 0.0041 17.6 0.1 9 43 2 35 1 133 0.85 ABC transporter AAA_16 PF13191.6 170 pGCA_000465235_00063 - 181 0.0045 17.4 0.0 1 1 1.9e-05 0.0092 16.4 0.0 22 62 2 43 1 76 0.75 AAA ATPase domain KTI12 PF08433.10 272 pGCA_000465235_00063 - 181 0.0048 16.4 0.0 1 2 2e-05 0.0095 15.4 0.0 3 42 6 44 5 87 0.74 Chromatin associated protein KTI12 KTI12 PF08433.10 272 pGCA_000465235_00063 - 181 0.0048 16.4 0.0 2 2 4.5 2.2e+03 -2.2 0.0 263 263 137 137 104 174 0.57 Chromatin associated protein KTI12 DUF2075 PF09848.9 363 pGCA_000465235_00063 - 181 0.005 16.1 0.2 1 1 1.6e-05 0.0077 15.5 0.1 2 29 5 32 4 68 0.84 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.20 158 pGCA_000465235_00063 - 181 0.0076 16.2 0.0 1 2 0.00023 0.11 12.3 0.0 1 79 3 84 3 111 0.64 Adenylylsulphate kinase APS_kinase PF01583.20 158 pGCA_000465235_00063 - 181 0.0076 16.2 0.0 2 2 0.37 1.8e+02 1.9 0.0 44 74 118 148 98 155 0.85 Adenylylsulphate kinase AAA_30 PF13604.6 192 pGCA_000465235_00063 - 181 0.0092 15.7 0.1 1 1 3.2e-05 0.016 15.0 0.1 17 40 3 26 1 39 0.82 AAA domain AAA_24 PF13479.6 197 pGCA_000465235_00063 - 181 0.0096 15.7 0.3 1 1 2e-05 0.0097 15.6 0.3 3 23 5 30 3 171 0.85 AAA domain Ploopntkinase1 PF18748.1 196 pGCA_000465235_00063 - 181 0.0099 15.4 0.0 1 2 0.087 42 3.6 0.0 16 41 3 28 1 41 0.82 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 pGCA_000465235_00063 - 181 0.0099 15.4 0.0 2 2 0.00091 0.44 10.0 0.0 93 164 72 143 54 154 0.81 P-loop Nucleotide Kinase1 T2SSE PF00437.20 273 pGCA_000465235_00063 - 181 0.011 14.8 0.0 1 1 3.4e-05 0.016 14.3 0.0 130 158 5 33 1 75 0.82 Type II/IV secretion system protein ATPase PF06745.13 231 pGCA_000465235_00063 - 181 0.011 15.1 1.2 1 2 3.6e-05 0.017 14.5 0.1 18 37 3 22 1 35 0.87 KaiC ATPase PF06745.13 231 pGCA_000465235_00063 - 181 0.011 15.1 1.2 2 2 2.3 1.1e+03 -1.3 0.1 98 129 123 159 100 175 0.49 KaiC Rad17 PF03215.15 186 pGCA_000465235_00063 - 181 0.012 15.5 0.0 1 2 8.1e-05 0.039 13.9 0.0 45 71 4 30 1 40 0.88 Rad17 P-loop domain Rad17 PF03215.15 186 pGCA_000465235_00063 - 181 0.012 15.5 0.0 2 2 3.2 1.5e+03 -1.1 0.0 113 146 110 145 96 169 0.62 Rad17 P-loop domain SRP54 PF00448.22 196 pGCA_000465235_00063 - 181 0.016 14.8 0.1 1 1 6.3e-05 0.031 13.9 0.1 3 40 6 42 4 49 0.84 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 168 pGCA_000465235_00063 - 181 0.021 14.7 1.0 1 2 0.0001 0.049 13.5 0.3 2 22 7 27 6 35 0.85 NTPase NTPase_1 PF03266.15 168 pGCA_000465235_00063 - 181 0.021 14.7 1.0 2 2 2.1 1e+03 -0.5 0.0 115 136 97 118 58 172 0.59 NTPase dNK PF01712.19 204 pGCA_000465235_00063 - 181 0.034 14.0 0.2 1 2 0.0019 0.94 9.3 0.0 1 52 7 75 7 77 0.66 Deoxynucleoside kinase dNK PF01712.19 204 pGCA_000465235_00063 - 181 0.034 14.0 0.2 2 2 0.19 94 2.8 0.2 118 162 102 143 92 175 0.70 Deoxynucleoside kinase Sigma54_activat PF00158.26 168 pGCA_000465235_00063 - 181 0.035 13.8 0.0 1 1 0.00014 0.066 12.9 0.0 25 68 7 57 1 89 0.76 Sigma-54 interaction domain TIP49 PF06068.13 351 pGCA_000465235_00063 - 181 0.035 13.3 0.2 1 2 0.00023 0.11 11.6 0.0 50 77 4 31 1 46 0.84 TIP49 P-loop domain TIP49 PF06068.13 351 pGCA_000465235_00063 - 181 0.035 13.3 0.2 2 2 1.4 7e+02 -0.8 0.1 148 178 126 156 105 172 0.75 TIP49 P-loop domain ATPase_2 PF01637.18 233 pGCA_000465235_00063 - 181 0.039 13.8 0.3 1 2 0.0045 2.2 8.2 0.0 19 49 3 32 1 50 0.75 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pGCA_000465235_00063 - 181 0.039 13.8 0.3 2 2 0.085 41 4.0 0.1 48 97 102 150 92 179 0.53 ATPase domain predominantly from Archaea DnaB_C PF03796.15 255 pGCA_000465235_00063 - 181 0.06 12.7 0.4 1 2 0.00026 0.13 11.6 0.0 17 47 2 32 1 42 0.83 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_000465235_00063 - 181 0.06 12.7 0.4 2 2 2.6 1.3e+03 -1.5 0.1 84 91 136 143 98 179 0.39 DnaB-like helicase C terminal domain MKT1_N PF12247.8 90 pGCA_000465235_00063 - 181 0.069 13.5 0.0 1 1 0.00057 0.28 11.6 0.0 14 51 39 74 36 147 0.88 Temperature dependent protein affecting M2 dsRNA replication AAA_11 PF13086.6 261 pGCA_000465235_00063 - 181 0.073 12.8 1.5 1 1 0.00025 0.12 12.1 1.5 16 42 3 29 1 179 0.85 AAA domain PhoH PF02562.16 205 pGCA_000465235_00063 - 181 0.076 12.5 0.1 1 1 0.0003 0.14 11.5 0.1 18 49 3 34 1 36 0.84 PhoH-like protein RNA_helicase PF00910.22 107 pGCA_000465235_00063 - 181 0.089 13.2 0.0 1 1 0.00032 0.16 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase NACHT PF05729.12 166 pGCA_000465235_00063 - 181 0.1 12.5 0.0 1 1 0.00036 0.17 11.8 0.0 1 40 5 45 5 73 0.78 NACHT domain ATP-synt_ab PF00006.25 213 pGCA_000465235_00063 - 181 0.14 11.8 0.0 1 1 0.00028 0.14 11.8 0.0 13 45 3 34 1 178 0.82 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 181 pGCA_000465235_00063 - 181 0.18 11.3 0.7 1 2 0.00058 0.28 10.7 0.1 31 63 2 34 1 46 0.80 P-loop containing dynein motor region AAA_7 PF12775.7 181 pGCA_000465235_00063 - 181 0.18 11.3 0.7 2 2 8.9 4.3e+03 -3.0 0.0 65 82 156 173 132 176 0.64 P-loop containing dynein motor region Cytidylate_kin2 PF13189.6 179 pGCA_000465235_00063 - 181 0.2 11.8 1.5 1 2 0.038 19 5.4 0.1 1 23 6 28 6 36 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 pGCA_000465235_00063 - 181 0.2 11.8 1.5 2 2 0.026 12 5.9 0.1 108 147 99 138 28 143 0.73 Cytidylate kinase-like family APH PF01636.23 240 pGCA_000465235_00064 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pGCA_000465235_00064 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pGCA_000465235_00064 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pGCA_000465235_00064 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pGCA_000465235_00064 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pGCA_000465235_00064 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 pGCA_000465235_00065 - 139 2.2e-51 174.9 0.1 1 1 1.4e-55 2.4e-51 174.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase Adenyl_transf PF04439.12 279 pGCA_000465235_00066 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 pGCA_000465235_00067 - 180 3.8e-20 72.3 0.1 1 1 2.3e-23 5.3e-20 71.8 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 pGCA_000465235_00067 - 180 1.2e-13 51.2 0.1 1 1 9.1e-17 2e-13 50.5 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 pGCA_000465235_00067 - 180 2.7e-12 46.7 0.0 1 1 1.6e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 pGCA_000465235_00067 - 180 1.1e-09 38.6 1.1 1 1 6e-13 1.3e-09 38.3 1.1 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 pGCA_000465235_00067 - 180 0.0011 19.7 0.0 1 1 6.1e-07 0.0014 19.4 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 pGCA_000465235_00067 - 180 0.0011 19.0 0.0 1 1 1.2e-06 0.0027 17.8 0.0 6 58 79 130 73 132 0.85 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 pGCA_000465235_00067 - 180 0.015 15.4 0.0 1 1 2.6e-05 0.059 13.5 0.0 21 126 50 154 43 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 pGCA_000465235_00067 - 180 0.038 14.0 0.0 1 1 2.9e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein APH PF01636.23 240 pGCA_000465235_00068 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pGCA_000465235_00068 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pGCA_000465235_00068 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pGCA_000465235_00068 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family zf-HC2 PF13490.6 35 pGCA_000465235_00069 - 221 3.2e-06 27.3 2.7 1 1 1.2e-09 6.9e-06 26.2 2.7 4 35 11 42 9 42 0.97 Putative zinc-finger Glyco_hydro_100 PF12899.7 435 pGCA_000465235_00069 - 221 0.11 11.1 0.0 1 2 5.6e-05 0.34 9.5 0.0 29 75 3 50 1 72 0.86 Alkaline and neutral invertase Glyco_hydro_100 PF12899.7 435 pGCA_000465235_00069 - 221 0.11 11.1 0.0 2 2 0.094 5.6e+02 -1.1 0.0 265 319 107 163 99 169 0.82 Alkaline and neutral invertase TetR_C_11 PF16859.5 113 pGCA_000465235_00069 - 221 0.15 12.4 0.7 1 1 3.5e-05 0.21 11.9 0.7 12 111 12 110 11 112 0.88 Tetracyclin repressor-like, C-terminal domain Sigma70_r4_2 PF08281.12 54 pGCA_000465235_00070 - 150 2.5e-07 30.3 0.0 1 1 6.3e-11 3.8e-07 29.7 0.0 1 54 87 140 87 140 0.97 Sigma-70, region 4 Sigma70_r4 PF04545.16 50 pGCA_000465235_00070 - 150 3.8e-06 26.3 0.0 1 1 1.1e-09 6.3e-06 25.6 0.0 1 48 93 140 93 142 0.93 Sigma-70, region 4 HTH_38 PF13936.6 44 pGCA_000465235_00070 - 150 0.021 14.6 0.0 1 1 6.9e-06 0.041 13.6 0.0 3 33 95 125 93 126 0.92 Helix-turn-helix domain Rep_3 PF01051.21 222 pGCA_000465235_00071 - 374 1.4e-41 142.7 17.1 1 2 4e-45 1.4e-41 142.7 17.1 8 222 30 238 23 238 0.91 Initiator Replication protein Rep_3 PF01051.21 222 pGCA_000465235_00071 - 374 1.4e-41 142.7 17.1 2 2 0.92 3.3e+03 -2.3 0.0 81 99 335 353 298 362 0.64 Initiator Replication protein Tic110 PF16940.5 574 pGCA_000465235_00071 - 374 0.0013 17.4 0.2 1 1 5.8e-07 0.0021 16.7 0.2 109 190 41 118 12 150 0.84 Chloroplast envelope transporter Rad1 PF02144.16 275 pGCA_000465235_00071 - 374 0.0033 16.5 0.4 1 1 1.4e-06 0.0051 15.9 0.4 71 151 57 156 20 182 0.85 Repair protein Rad1/Rec1/Rad17 Cas_Cas6 PF01881.16 146 pGCA_000465235_00071 - 374 0.16 12.5 0.2 1 3 1.3 4.8e+03 -2.0 2.4 74 101 122 147 60 186 0.60 CRISPR associated protein Cas6 Cas_Cas6 PF01881.16 146 pGCA_000465235_00071 - 374 0.16 12.5 0.2 2 3 0.33 1.2e+03 -0.0 0.2 41 82 216 262 172 304 0.73 CRISPR associated protein Cas6 Cas_Cas6 PF01881.16 146 pGCA_000465235_00071 - 374 0.16 12.5 0.2 3 3 4.4e-05 0.16 12.5 0.2 53 105 308 359 299 367 0.79 CRISPR associated protein Cas6 Peptidase_M15_2 PF05951.13 153 pGCA_000465235_00071 - 374 1.2 8.8 5.0 1 3 0.0054 20 4.8 0.4 21 75 59 111 36 131 0.76 Bacterial protein of unknown function (DUF882) Peptidase_M15_2 PF05951.13 153 pGCA_000465235_00071 - 374 1.2 8.8 5.0 2 3 0.46 1.6e+03 -1.4 0.1 28 51 153 176 130 196 0.73 Bacterial protein of unknown function (DUF882) Peptidase_M15_2 PF05951.13 153 pGCA_000465235_00071 - 374 1.2 8.8 5.0 3 3 0.0062 22 4.7 0.1 14 51 335 372 326 374 0.76 Bacterial protein of unknown function (DUF882) VbhA PF18495.1 47 pGCA_000465235_00072 - 82 0.092 12.6 0.0 1 1 1.5e-05 0.13 12.1 0.0 2 45 32 75 31 76 0.91 Antitoxin VbhA KNOX2 PF03791.13 48 pGCA_000465235_00072 - 82 0.11 12.1 0.2 1 2 2.9e-05 0.26 10.8 0.1 16 34 17 35 12 37 0.86 KNOX2 domain KNOX2 PF03791.13 48 pGCA_000465235_00072 - 82 0.11 12.1 0.2 2 2 0.51 4.6e+03 -2.8 0.0 18 25 70 77 69 78 0.78 KNOX2 domain BT1 PF03092.16 524 pGCA_000465235_00074 - 75 0.0025 16.1 0.2 1 1 1.1e-06 0.0027 16.0 0.2 457 517 15 73 9 75 0.84 BT1 family MARVEL PF01284.23 144 pGCA_000465235_00074 - 75 0.0028 17.7 0.6 1 1 1.2e-06 0.003 17.6 0.6 2 62 7 60 6 71 0.83 Membrane-associating domain ATP-synt_I PF03899.15 100 pGCA_000465235_00074 - 75 0.0038 17.6 3.5 1 1 1.6e-06 0.0041 17.5 3.5 3 57 17 68 15 75 0.85 ATP synthase I chain DUF1772 PF08592.11 137 pGCA_000465235_00074 - 75 0.017 15.5 0.1 1 1 6.8e-06 0.017 15.4 0.1 42 94 20 71 8 75 0.70 Domain of unknown function (DUF1772) TctB PF07331.11 135 pGCA_000465235_00074 - 75 0.18 12.1 5.4 1 1 8.4e-05 0.22 11.8 5.4 83 126 14 57 11 63 0.83 Tripartite tricarboxylate transporter TctB family YvrJ PF12841.7 36 pGCA_000465235_00074 - 75 0.23 11.0 0.1 1 3 0.16 4.2e+02 0.6 0.1 22 29 3 10 2 15 0.75 YvrJ protein family YvrJ PF12841.7 36 pGCA_000465235_00074 - 75 0.23 11.0 0.1 2 3 1.9 4.8e+03 -2.8 0.1 9 13 20 24 19 26 0.73 YvrJ protein family YvrJ PF12841.7 36 pGCA_000465235_00074 - 75 0.23 11.0 0.1 3 3 8.9e-05 0.23 11.0 0.1 6 25 48 67 44 74 0.87 YvrJ protein family DUF4131 PF13567.6 167 pGCA_000465235_00074 - 75 0.91 9.2 3.4 1 1 0.00044 1.1 8.9 3.4 8 49 16 57 10 65 0.76 Domain of unknown function (DUF4131) W2 PF02020.18 79 pGCA_000583775_00001 - 266 0.02 15.0 0.1 1 2 0.23 4.1e+03 -2.0 0.0 43 65 155 177 150 179 0.61 eIF4-gamma/eIF5/eIF2-epsilon W2 PF02020.18 79 pGCA_000583775_00001 - 266 0.02 15.0 0.1 2 2 3.4e-06 0.061 13.5 0.0 38 77 180 240 176 242 0.86 eIF4-gamma/eIF5/eIF2-epsilon Lip_prot_lig_C PF10437.9 85 pGCA_000583775_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pGCA_000583775_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pGCA_000583775_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pGCA_000583775_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain LysE PF01810.18 193 pGCA_000583775_00003 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 pGCA_000583775_00003 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pGCA_000583775_00003 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 pGCA_000583775_00003 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 pGCA_000583775_00003 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 pGCA_000583775_00003 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 pGCA_000583775_00003 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 pGCA_000583775_00003 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 pGCA_000583775_00003 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pGCA_000583775_00003 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pGCA_000583775_00003 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 pGCA_000583775_00003 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 pGCA_000583775_00004 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pGCA_000583775_00004 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pGCA_000583775_00004 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pGCA_000583775_00004 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pGCA_000583775_00004 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pGCA_000583775_00004 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pGCA_000583775_00005 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pGCA_000583775_00005 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pGCA_000583775_00006 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pGCA_000583775_00006 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pGCA_000583775_00006 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_000583775_00006 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pGCA_000583775_00006 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pGCA_000583775_00006 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase SNF2_N PF00176.23 350 pGCA_000583775_00008 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_000583775_00008 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_000583775_00008 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 pGCA_000583775_00008 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_000583775_00008 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_000583775_00008 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pGCA_000583775_00008 - 1932 9.9e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pGCA_000583775_00008 - 1932 9.9e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pGCA_000583775_00008 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pGCA_000583775_00008 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 pGCA_000583775_00008 - 1932 2.9e-05 24.5 0.6 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pGCA_000583775_00008 - 1932 2.9e-05 24.5 0.6 2 2 1.5 5.3e+03 -2.0 0.0 41 81 661 701 646 719 0.66 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 pGCA_000583775_00009 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pGCA_000583775_00009 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 pGCA_000583775_00010 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_000583775_00010 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pGCA_000583775_00011 - 169 5.2e-05 23.2 6.1 1 3 4.6e-05 0.28 11.2 0.2 23 45 2 24 1 33 0.91 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_000583775_00011 - 169 5.2e-05 23.2 6.1 2 3 0.21 1.3e+03 -0.5 0.0 21 36 63 78 56 96 0.84 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_000583775_00011 - 169 5.2e-05 23.2 6.1 3 3 1.1e-05 0.063 13.3 1.0 15 62 93 142 77 147 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pGCA_000583775_00011 - 169 0.036 14.2 2.3 1 1 7.7e-06 0.046 13.8 1.6 54 131 4 89 1 110 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pGCA_000583775_00011 - 169 0.21 11.7 7.8 1 3 0.34 2e+03 -1.1 0.1 46 55 4 13 2 44 0.65 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_000583775_00011 - 169 0.21 11.7 7.8 2 3 0.0034 20 5.3 0.7 10 46 41 77 39 83 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_000583775_00011 - 169 0.21 11.7 7.8 3 3 0.00016 0.93 9.6 0.3 8 32 89 113 88 120 0.90 U3 small nucleolar RNA-associated protein 6 Imm41 PF15592.6 114 pGCA_000583775_00012 - 68 0.031 14.6 2.2 1 1 1.9e-06 0.034 14.5 2.2 34 95 6 66 2 68 0.82 Immunity protein 41 DUF2400 PF09674.10 227 pGCA_000583775_00014 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pGCA_000583775_00014 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pGCA_000583775_00015 - 408 1.9e-08 34.5 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pGCA_000583775_00015 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pGCA_000583775_00015 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pGCA_000583775_00015 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_000583775_00015 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pGCA_000583775_00016 - 92 0.0072 16.3 0.0 1 1 7.4e-07 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) Sdh_cyt PF01127.22 121 pGCA_000583775_00017 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 pGCA_000583775_00017 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 pGCA_000583775_00017 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pGCA_000583775_00019 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pGCA_000583775_00020 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pGCA_000583775_00021 - 597 1.6e-14 54.0 0.0 1 1 1.3e-17 3.3e-14 52.9 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pGCA_000583775_00021 - 597 0.00038 19.9 0.0 1 2 7.4e-07 0.0019 17.6 0.0 16 117 30 136 24 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_000583775_00021 - 597 0.00038 19.9 0.0 2 2 0.017 44 3.3 0.0 122 183 113 176 96 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_000583775_00021 - 597 0.0022 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_000583775_00021 - 597 0.0022 17.7 0.0 2 2 0.5 1.3e+03 -1.0 0.0 99 118 111 130 102 168 0.67 IstB-like ATP binding protein AAA PF00004.29 132 pGCA_000583775_00021 - 597 0.009 16.4 0.2 1 2 8.6e-05 0.22 11.9 0.0 2 105 37 166 36 176 0.67 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_000583775_00021 - 597 0.009 16.4 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pGCA_000583775_00021 - 597 0.0091 15.4 0.0 1 2 2.3e-05 0.058 12.7 0.0 16 70 30 83 23 120 0.90 KaiC ATPase PF06745.13 231 pGCA_000583775_00021 - 597 0.0091 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC CbiA PF01656.23 128 pGCA_000583775_00021 - 597 0.16 12.0 1.6 1 1 0.00029 0.74 9.9 1.6 1 29 35 63 35 536 0.91 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pGCA_000583775_00021 - 597 0.37 10.8 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pGCA_000583775_00021 - 597 0.37 10.8 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pGCA_000583775_00021 - 597 0.37 10.8 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 pGCA_000583775_00022 - 204 1.6e-33 115.9 0.7 1 1 4.7e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pGCA_000583775_00022 - 204 0.024 14.4 0.8 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_000583775_00022 - 204 0.024 14.4 0.8 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_000583775_00022 - 204 0.024 14.4 0.8 3 3 0.01 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pGCA_000583775_00022 - 204 0.028 14.5 4.9 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_000583775_00022 - 204 0.028 14.5 4.9 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_000583775_00022 - 204 0.028 14.5 4.9 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pGCA_000583775_00022 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_000583775_00022 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_000583775_00022 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pGCA_000583775_00023 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pGCA_000583775_00023 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pGCA_000583775_00023 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pGCA_000583775_00025 - 87 1.4e-15 57.3 6.9 1 1 1.8e-19 1.6e-15 57.1 6.9 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pGCA_000583775_00025 - 87 0.041 13.8 3.5 1 1 5.4e-06 0.049 13.5 3.3 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pGCA_000583775_00026 - 922 3.3e-50 171.1 0.4 1 1 1.3e-53 7.5e-50 169.9 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pGCA_000583775_00026 - 922 7.2e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pGCA_000583775_00026 - 922 0.046 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pGCA_000583775_00027 - 185 3e-29 101.4 0.0 1 1 8.1e-33 4.8e-29 100.8 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pGCA_000583775_00027 - 185 0.0017 18.4 0.0 1 1 6e-07 0.0036 17.4 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) DUF5512 PF17631.2 139 pGCA_000583775_00027 - 185 0.071 13.1 0.1 1 1 2.2e-05 0.13 12.2 0.1 77 131 80 130 3 133 0.85 Family of unknown function (DUF5512) DUF3251 PF11622.8 165 pGCA_000583775_00028 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pGCA_000583775_00028 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pGCA_000583775_00028 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pGCA_000583775_00028 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_000583775_00028 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_000583775_00028 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pGCA_000583775_00028 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pGCA_000583775_00028 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pGCA_000583775_00028 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pGCA_000583775_00028 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pGCA_000583775_00028 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pGCA_000583775_00028 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pGCA_000583775_00028 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pGCA_000583775_00028 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pGCA_000583775_00029 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pGCA_000583775_00030 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pGCA_000583775_00030 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pGCA_000583775_00030 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pGCA_000583775_00030 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pGCA_000583775_00030 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pGCA_000583775_00030 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pGCA_000583775_00030 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pGCA_000583775_00031 - 323 5.3e-28 98.8 13.9 1 1 2.7e-31 6.9e-28 98.4 13.9 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pGCA_000583775_00031 - 323 0.0037 17.4 0.4 1 2 1 2.6e+03 -1.4 0.0 30 53 134 157 122 164 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pGCA_000583775_00031 - 323 0.0037 17.4 0.4 2 2 6.1e-06 0.016 15.4 0.1 18 82 195 259 188 263 0.92 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pGCA_000583775_00031 - 323 0.0077 16.9 5.4 1 3 0.066 1.7e+02 2.9 0.4 92 135 104 145 42 146 0.58 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pGCA_000583775_00031 - 323 0.0077 16.9 5.4 2 3 0.096 2.5e+02 2.3 0.4 52 135 111 145 89 182 0.59 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pGCA_000583775_00031 - 323 0.0077 16.9 5.4 3 3 3e-06 0.0077 16.9 5.4 47 128 219 318 203 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pGCA_000583775_00031 - 323 0.064 12.8 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pGCA_000583775_00031 - 323 0.064 12.8 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pGCA_000583775_00031 - 323 0.11 13.2 3.6 1 2 2 5e+03 -1.8 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 pGCA_000583775_00031 - 323 0.11 13.2 3.6 2 2 3.1e-05 0.08 13.6 1.1 32 84 209 270 203 295 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 pGCA_000583775_00031 - 323 3.8 7.8 11.9 1 3 0.00063 1.6 9.0 0.2 57 107 101 151 97 185 0.93 Tho complex subunit 7 THOC7 PF05615.13 132 pGCA_000583775_00031 - 323 3.8 7.8 11.9 2 3 0.048 1.2e+02 2.9 0.9 56 92 210 253 199 263 0.57 Tho complex subunit 7 THOC7 PF05615.13 132 pGCA_000583775_00031 - 323 3.8 7.8 11.9 3 3 0.22 5.6e+02 0.8 5.3 20 71 235 294 227 315 0.62 Tho complex subunit 7 DHR10 PF18595.1 117 pGCA_000583775_00031 - 323 5.9 7.0 14.5 1 2 0.1 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pGCA_000583775_00031 - 323 5.9 7.0 14.5 2 2 0.00025 0.64 10.1 6.3 37 105 233 300 223 313 0.84 Designed helical repeat protein 10 domain TrbL PF04610.14 215 pGCA_000583775_00032 - 332 2.9e-31 108.9 34.2 1 2 4.9e-35 2.9e-31 108.9 34.2 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pGCA_000583775_00032 - 332 2.9e-31 108.9 34.2 2 2 0.56 3.4e+03 -2.4 0.1 58 87 290 325 265 330 0.46 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pGCA_000583775_00032 - 332 0.059 13.2 2.2 1 2 0.4 2.4e+03 -1.6 0.1 39 51 71 83 62 115 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pGCA_000583775_00032 - 332 0.059 13.2 2.2 2 2 1.6e-05 0.093 12.5 0.2 27 81 237 288 203 299 0.71 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pGCA_000583775_00032 - 332 0.29 12.1 6.0 1 1 9.6e-05 0.57 11.1 6.0 9 38 300 329 285 331 0.89 Altered inheritance of mitochondria protein 3 VirB8 PF04335.13 214 pGCA_000583775_00034 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pGCA_000583775_00034 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pGCA_000583775_00035 - 295 2e-54 184.5 1.3 1 1 3.7e-58 3.3e-54 183.8 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pGCA_000583775_00035 - 295 0.053 13.3 0.0 1 1 1.8e-05 0.16 11.8 0.0 1 51 1 51 1 66 0.92 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pGCA_000583775_00036 - 393 5.5e-48 163.3 0.1 1 2 0.76 6.9e+03 -3.3 0.3 136 154 141 167 120 173 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pGCA_000583775_00036 - 393 5.5e-48 163.3 0.1 2 2 6.1e-52 5.5e-48 163.3 0.1 1 187 196 377 196 377 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pGCA_000583775_00036 - 393 0.027 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 324 374 307 379 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pGCA_000583775_00037 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pGCA_000583775_00037 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_000583775_00037 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pGCA_000583775_00037 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pGCA_000583775_00037 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pGCA_000583775_00037 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pGCA_000583775_00037 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pGCA_000583775_00037 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pGCA_000583775_00037 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pGCA_000583775_00037 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pGCA_000583775_00037 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pGCA_000583775_00037 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pGCA_000583775_00037 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pGCA_000583775_00037 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pGCA_000583775_00037 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pGCA_000583775_00037 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pGCA_000583775_00037 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pGCA_000583775_00037 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pGCA_000583775_00037 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pGCA_000583775_00037 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pGCA_000583775_00037 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pGCA_000583775_00037 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pGCA_000583775_00037 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pGCA_000583775_00037 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pGCA_000583775_00037 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pGCA_000583775_00037 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pGCA_000583775_00037 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pGCA_000583775_00037 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pGCA_000583775_00037 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pGCA_000583775_00037 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pGCA_000583775_00037 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pGCA_000583775_00037 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pGCA_000583775_00038 - 567 7.4e-106 354.7 0.1 1 1 1.7e-109 1e-105 354.3 0.1 3 460 58 527 46 535 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_000583775_00038 - 567 9.5e-25 87.0 0.0 1 1 3.1e-28 1.9e-24 86.1 0.0 2 125 370 492 369 493 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pGCA_000583775_00038 - 567 3.7e-15 55.7 0.0 1 2 7.5e-06 0.045 12.7 0.0 45 156 117 240 89 262 0.73 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_000583775_00038 - 567 3.7e-15 55.7 0.0 2 2 1.8e-14 1.1e-10 41.1 0.0 187 370 311 496 274 507 0.81 Type IV secretion-system coupling protein DNA-binding domain Cag12 PF13117.6 97 pGCA_000583775_00039 - 143 1.5e-16 60.7 0.2 1 1 2.2e-20 2e-16 60.3 0.2 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pGCA_000583775_00039 - 143 0.061 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 pGCA_000583775_00040 - 252 2.1e-38 131.7 1.2 1 1 1.5e-42 2.8e-38 131.3 1.2 1 154 25 190 25 192 0.90 TrbM PRELI PF04707.14 157 pGCA_000583775_00041 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pGCA_000583775_00041 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pGCA_000583775_00041 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pGCA_000583775_00041 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_000583775_00041 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_000583775_00041 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pGCA_000583775_00043 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pGCA_000583775_00043 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pGCA_000583775_00044 - 730 1.4e-96 324.0 8.0 1 1 1.9e-99 2e-96 323.6 8.0 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pGCA_000583775_00044 - 730 1e-11 44.9 0.0 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pGCA_000583775_00044 - 730 1e-11 44.9 0.0 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pGCA_000583775_00044 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pGCA_000583775_00044 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pGCA_000583775_00044 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_000583775_00044 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_000583775_00044 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pGCA_000583775_00044 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pGCA_000583775_00044 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pGCA_000583775_00044 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pGCA_000583775_00044 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pGCA_000583775_00044 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pGCA_000583775_00044 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain EF-hand_8 PF13833.6 55 pGCA_000583775_00044 - 730 0.052 13.4 0.2 1 2 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair EF-hand_8 PF13833.6 55 pGCA_000583775_00044 - 730 0.052 13.4 0.2 2 2 1.7 1.8e+03 -1.2 0.0 24 36 342 354 332 355 0.83 EF-hand domain pair zf-C2H2_4 PF13894.6 24 pGCA_000583775_00044 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pGCA_000583775_00044 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pGCA_000583775_00044 - 730 0.086 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pGCA_000583775_00044 - 730 0.086 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 pGCA_000583775_00044 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pGCA_000583775_00044 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pGCA_000583775_00044 - 730 0.38 11.0 3.0 1 3 1.9 2e+03 -1.0 0.0 26 47 362 383 354 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_000583775_00044 - 730 0.38 11.0 3.0 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_000583775_00044 - 730 0.38 11.0 3.0 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pGCA_000583775_00044 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pGCA_000583775_00044 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pGCA_000583775_00044 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_000583775_00044 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pGCA_000583775_00044 - 730 0.76 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pGCA_000583775_00044 - 730 0.76 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pGCA_000583775_00044 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pGCA_000583775_00044 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pGCA_000583775_00044 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pGCA_000583775_00044 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type NmrA PF05368.13 233 pGCA_000583775_00046 - 70 0.017 14.7 0.0 1 1 1e-06 0.018 14.6 0.0 186 224 28 66 11 69 0.92 NmrA-like family GTP_EFTU PF00009.27 194 pGCA_000583775_00048 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pGCA_000583775_00048 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pGCA_000583775_00048 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pGCA_000583775_00048 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pGCA_000583775_00048 - 639 2.2e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pGCA_000583775_00048 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pGCA_000583775_00048 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pGCA_000583775_00048 - 639 0.0095 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pGCA_000583775_00048 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pGCA_000583775_00048 - 639 0.049 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family AAA_18 PF13238.6 130 pGCA_000583775_00049 - 152 1.5e-06 28.8 0.0 1 1 4.5e-10 2e-06 28.4 0.0 44 122 15 104 2 112 0.79 AAA domain CPT PF07931.12 174 pGCA_000583775_00049 - 152 3.5e-06 27.0 0.0 1 1 9.4e-10 4.2e-06 26.7 0.0 59 172 26 143 5 145 0.80 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 pGCA_000583775_00049 - 152 0.0018 18.5 0.0 1 1 5.7e-07 0.0026 17.9 0.0 55 135 35 114 4 117 0.78 AAA domain MKT1_N PF12247.8 90 pGCA_000583775_00049 - 152 0.088 13.2 0.0 1 1 3.7e-05 0.17 12.3 0.0 14 51 10 45 7 135 0.89 Temperature dependent protein affecting M2 dsRNA replication APH PF01636.23 240 pGCA_000583775_00050 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pGCA_000583775_00050 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pGCA_000583775_00050 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pGCA_000583775_00050 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pGCA_000583775_00050 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pGCA_000583775_00050 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 pGCA_000583775_00051 - 139 2.2e-51 174.9 0.1 1 1 1.4e-55 2.4e-51 174.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase Adenyl_transf PF04439.12 279 pGCA_000583775_00052 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 pGCA_000583775_00053 - 180 3.8e-20 72.3 0.1 1 1 2.3e-23 5.3e-20 71.8 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 pGCA_000583775_00053 - 180 1.2e-13 51.2 0.1 1 1 9.1e-17 2e-13 50.5 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 pGCA_000583775_00053 - 180 2.7e-12 46.7 0.0 1 1 1.6e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 pGCA_000583775_00053 - 180 1.1e-09 38.6 1.1 1 1 6e-13 1.3e-09 38.3 1.1 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 pGCA_000583775_00053 - 180 0.0011 19.7 0.0 1 1 6.1e-07 0.0014 19.4 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 pGCA_000583775_00053 - 180 0.0011 19.0 0.0 1 1 1.2e-06 0.0027 17.8 0.0 6 58 79 130 73 132 0.85 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 pGCA_000583775_00053 - 180 0.015 15.4 0.0 1 1 2.6e-05 0.059 13.5 0.0 21 126 50 154 43 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 pGCA_000583775_00053 - 180 0.038 14.0 0.0 1 1 2.9e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein APH PF01636.23 240 pGCA_000583775_00054 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pGCA_000583775_00054 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pGCA_000583775_00054 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pGCA_000583775_00054 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family W2 PF02020.18 79 pGCA_000583795_00001 - 430 0.049 13.8 0.0 1 1 7.6e-06 0.14 12.3 0.0 38 77 344 404 341 406 0.86 eIF4-gamma/eIF5/eIF2-epsilon Lip_prot_lig_C PF10437.9 85 pGCA_000583795_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pGCA_000583795_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pGCA_000583795_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pGCA_000583795_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pGCA_000583795_00003 - 87 0.0072 15.7 2.9 1 2 0.55 9.8e+03 -3.9 0.1 30 45 5 9 2 10 0.51 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pGCA_000583795_00003 - 87 0.0072 15.7 2.9 2 2 4e-07 0.0072 15.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Y1_Tnp PF01797.16 121 pGCA_000583795_00004 - 142 4e-36 123.8 1.9 1 1 7.8e-40 4.7e-36 123.6 1.9 2 121 19 141 18 141 0.97 Transposase IS200 like Symplekin_C PF12295.8 186 pGCA_000583795_00004 - 142 0.042 14.0 0.2 1 1 8.2e-06 0.049 13.7 0.2 76 162 43 128 7 138 0.75 Symplekin tight junction protein C terminal DUF4974 PF16344.5 70 pGCA_000583795_00004 - 142 0.47 10.5 3.6 1 2 1.7 1e+04 -3.4 0.1 32 44 4 16 3 18 0.74 Domain of unknown function (DUF4974) DUF4974 PF16344.5 70 pGCA_000583795_00004 - 142 0.47 10.5 3.6 2 2 2.6e-05 0.16 12.0 1.0 6 67 41 101 39 104 0.90 Domain of unknown function (DUF4974) OrfB_Zn_ribbon PF07282.11 69 pGCA_000583795_00005 - 399 3.2e-21 75.0 0.5 1 1 3.1e-24 6.9e-21 73.9 0.5 1 68 287 356 287 357 0.97 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 47 pGCA_000583795_00005 - 399 2.4e-20 71.7 1.5 1 1 2.2e-23 4.8e-20 70.8 1.5 1 45 1 44 1 46 0.96 Helix-turn-helix domain OrfB_IS605 PF01385.19 120 pGCA_000583795_00005 - 399 7.6e-20 71.3 2.2 1 1 8.5e-23 1.9e-19 70.0 2.2 4 117 162 273 159 276 0.93 Probable transposase HypA PF01155.19 112 pGCA_000583795_00005 - 399 0.19 11.7 0.7 1 1 0.00019 0.42 10.6 0.7 66 96 311 344 211 355 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ACC PF17848.1 26 pGCA_000583795_00005 - 399 0.32 11.1 1.5 1 1 0.00057 1.3 9.2 1.5 4 26 318 340 318 340 0.99 Acetyl-coA carboxylase zinc finger domain zf-ribbon_3 PF13248.6 26 pGCA_000583795_00005 - 399 2.3 7.7 5.7 1 3 0.0086 19 4.8 0.3 16 23 315 322 313 325 0.67 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pGCA_000583795_00005 - 399 2.3 7.7 5.7 2 3 0.0074 16 5.0 0.1 4 10 336 342 333 348 0.80 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pGCA_000583795_00005 - 399 2.3 7.7 5.7 3 3 3.1 6.9e+03 -3.3 0.1 7 10 387 390 386 391 0.54 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 pGCA_000583795_00005 - 399 3.9 7.5 5.0 1 2 0.0014 3.2 7.8 2.0 14 44 311 341 308 343 0.81 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 pGCA_000583795_00005 - 399 3.9 7.5 5.0 2 2 0.036 81 3.3 1.6 19 32 335 348 326 391 0.77 Transposase zinc-ribbon domain Ima1_N PF09779.9 135 pGCA_000583795_00005 - 399 5 8.0 7.5 1 3 0.36 8e+02 0.9 0.7 66 118 54 100 29 112 0.58 Ima1 N-terminal domain Ima1_N PF09779.9 135 pGCA_000583795_00005 - 399 5 8.0 7.5 2 3 0.93 2.1e+03 -0.5 0.1 65 95 113 156 84 168 0.54 Ima1 N-terminal domain Ima1_N PF09779.9 135 pGCA_000583795_00005 - 399 5 8.0 7.5 3 3 0.00076 1.7 9.5 0.7 3 38 318 353 317 383 0.86 Ima1 N-terminal domain LysE PF01810.18 193 pGCA_000583795_00006 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 pGCA_000583795_00006 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pGCA_000583795_00006 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 pGCA_000583795_00006 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 pGCA_000583795_00006 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 pGCA_000583795_00006 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 pGCA_000583795_00006 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 pGCA_000583795_00006 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 pGCA_000583795_00006 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pGCA_000583795_00006 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pGCA_000583795_00006 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 pGCA_000583795_00006 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 pGCA_000583795_00007 - 49 0.0042 16.6 1.2 1 1 3.3e-07 0.0059 16.1 1.2 9 32 17 40 15 41 0.89 Protein of unknown function (DUF4044) NPA PF16469.5 123 pGCA_000583795_00008 - 91 0.057 14.0 6.1 1 1 3.3e-06 0.06 13.9 6.1 17 103 3 89 1 91 0.87 Nematode polyprotein allergen ABA-1 Papo_T_antigen PF02380.15 93 pGCA_000583795_00009 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pGCA_000583795_00009 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pGCA_000583795_00010 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pGCA_000583795_00010 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pGCA_000583795_00010 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_000583795_00010 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pGCA_000583795_00010 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pGCA_000583795_00010 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pGCA_000583795_00011 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pGCA_000583795_00012 - 1931 1.7e-16 59.9 1.2 1 3 1.1e-19 4e-16 58.7 0.1 56 245 1016 1272 934 1313 0.73 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_000583795_00012 - 1931 1.7e-16 59.9 1.2 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_000583795_00012 - 1931 1.7e-16 59.9 1.2 3 3 1.2 4.4e+03 -3.9 0.0 173 197 1879 1904 1860 1921 0.71 SNF2 family N-terminal domain ResIII PF04851.15 171 pGCA_000583795_00012 - 1931 7.5e-08 32.6 8.9 1 3 2.3 8.1e+03 -3.3 0.2 54 75 648 691 638 783 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_000583795_00012 - 1931 7.5e-08 32.6 8.9 2 3 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_000583795_00012 - 1931 7.5e-08 32.6 8.9 3 3 0.41 1.5e+03 -0.9 5.7 35 121 1799 1903 1746 1930 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pGCA_000583795_00012 - 1931 9.6e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pGCA_000583795_00012 - 1931 9.6e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pGCA_000583795_00012 - 1931 6.3e-06 26.1 1.8 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 pGCA_000583795_00012 - 1931 6.3e-06 26.1 1.8 2 2 0.086 3.1e+02 1.0 0.0 119 155 1882 1923 1826 1929 0.76 DEAD/DEAH box helicase Eco57I PF07669.11 106 pGCA_000583795_00012 - 1931 1.5e-05 25.5 0.7 1 2 4.3e-08 0.00015 22.2 0.2 3 103 371 471 369 474 0.79 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pGCA_000583795_00012 - 1931 1.5e-05 25.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 660 699 644 718 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 pGCA_000583795_00013 - 226 1.1e-09 38.9 1.0 1 1 2.6e-13 4.7e-09 36.9 1.0 49 120 123 195 4 216 0.83 NYN domain HTH_19 PF12844.7 65 pGCA_000583795_00014 - 314 7.3e-06 25.9 0.1 1 2 0.0025 4.5 7.4 0.0 11 31 9 29 1 41 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 pGCA_000583795_00014 - 314 7.3e-06 25.9 0.1 2 2 6.7e-06 0.012 15.6 0.0 28 64 117 152 98 153 0.91 Helix-turn-helix domain HTH_3 PF01381.22 55 pGCA_000583795_00014 - 314 7.9e-06 25.8 0.0 1 2 3.2e-07 0.00057 19.9 0.0 2 29 3 30 2 30 0.89 Helix-turn-helix HTH_3 PF01381.22 55 pGCA_000583795_00014 - 314 7.9e-06 25.8 0.0 2 2 0.041 74 3.5 0.0 26 55 118 147 109 147 0.90 Helix-turn-helix Phage_CI_repr PF07022.13 65 pGCA_000583795_00014 - 314 0.00077 19.5 0.0 1 2 2.5e-05 0.045 13.8 0.0 5 49 4 47 1 53 0.78 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 pGCA_000583795_00014 - 314 0.00077 19.5 0.0 2 2 0.056 1e+02 3.1 0.0 45 64 135 154 127 155 0.78 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 pGCA_000583795_00014 - 314 0.0073 15.8 0.0 1 2 5.5e-05 0.099 12.2 0.0 17 34 10 27 10 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pGCA_000583795_00014 - 314 0.0073 15.8 0.0 2 2 0.21 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 pGCA_000583795_00014 - 314 0.0088 16.1 0.0 1 2 1.7e-05 0.03 14.5 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain HTH_28 PF13518.6 52 pGCA_000583795_00014 - 314 0.0088 16.1 0.0 2 2 3.4 6.2e+03 -2.6 0.0 6 21 44 59 42 67 0.63 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 pGCA_000583795_00014 - 314 0.01 15.7 0.2 1 2 1.6e-05 0.028 14.3 0.0 2 36 3 37 2 49 0.79 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 pGCA_000583795_00014 - 314 0.01 15.7 0.2 2 2 3.5 6.2e+03 -2.8 0.1 38 47 290 299 289 300 0.85 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 pGCA_000583795_00014 - 314 0.017 14.9 0.0 1 2 2.7e-05 0.049 13.4 0.0 16 37 7 30 1 36 0.87 Homeodomain-like domain HTH_23 PF13384.6 50 pGCA_000583795_00014 - 314 0.017 14.9 0.0 2 2 2.6 4.7e+03 -2.4 0.0 35 49 54 67 53 67 0.81 Homeodomain-like domain Sigma70_r4_2 PF08281.12 54 pGCA_000583795_00014 - 314 0.026 14.2 0.0 1 1 3.1e-05 0.055 13.1 0.0 25 46 9 30 6 30 0.93 Sigma-70, region 4 HTH_31 PF13560.6 64 pGCA_000583795_00014 - 314 0.064 13.6 0.0 1 1 6.8e-05 0.12 12.7 0.0 13 33 9 29 3 38 0.89 Helix-turn-helix domain CENP-B_N PF04218.13 53 pGCA_000583795_00014 - 314 0.073 12.7 0.0 1 2 0.00019 0.35 10.5 0.0 22 44 10 32 8 35 0.92 CENP-B N-terminal DNA-binding domain CENP-B_N PF04218.13 53 pGCA_000583795_00014 - 314 0.073 12.7 0.0 2 2 2 3.6e+03 -2.3 0.0 32 41 293 302 290 303 0.82 CENP-B N-terminal DNA-binding domain Relaxase PF03432.14 242 pGCA_000583795_00015 - 462 4.1e-10 39.7 7.6 1 2 2.3e-14 4.1e-10 39.7 7.6 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_000583795_00015 - 462 4.1e-10 39.7 7.6 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pGCA_000583795_00016 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_000583795_00016 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_000583795_00016 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pGCA_000583795_00016 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pGCA_000583795_00016 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_000583795_00016 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_000583795_00016 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pGCA_000583795_00016 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pGCA_000583795_00016 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 pGCA_000583795_00016 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pGCA_000583795_00016 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain Sds3 PF08598.11 218 pGCA_000583795_00017 - 93 0.027 14.5 5.8 1 1 7.1e-06 0.032 14.3 5.8 45 97 7 62 5 88 0.83 Sds3-like CdvA PF18822.1 123 pGCA_000583795_00017 - 93 0.21 11.4 8.2 1 2 5.2e-05 0.23 11.3 5.3 18 48 6 36 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pGCA_000583795_00017 - 93 0.21 11.4 8.2 2 2 0.071 3.2e+02 1.1 0.0 97 112 60 75 45 89 0.67 CdvA-like coiled-coil domain DUF3671 PF12420.8 115 pGCA_000583795_00017 - 93 4.6 7.3 14.1 1 2 0.029 1.3e+02 2.7 3.9 24 49 17 42 1 46 0.70 Protein of unknown function DUF3671 PF12420.8 115 pGCA_000583795_00017 - 93 4.6 7.3 14.1 2 2 9.4e-05 0.42 10.7 2.6 4 32 59 85 56 93 0.81 Protein of unknown function CdiI PF07262.11 156 pGCA_000583795_00017 - 93 8.8 6.1 12.2 1 1 0.0035 16 5.3 12.2 49 101 17 77 1 89 0.74 CDI immunity protein DUF2400 PF09674.10 227 pGCA_000583795_00019 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pGCA_000583795_00019 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pGCA_000583795_00020 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pGCA_000583795_00020 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pGCA_000583795_00020 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pGCA_000583795_00020 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_000583795_00020 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pGCA_000583795_00021 - 48 0.0028 17.6 0.0 1 1 1.6e-07 0.0028 17.6 0.0 1 22 1 23 1 38 0.88 Protein of unknown function (DUF4223) Sdh_cyt PF01127.22 121 pGCA_000583795_00022 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 pGCA_000583795_00022 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 pGCA_000583795_00022 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pGCA_000583795_00024 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pGCA_000583795_00025 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pGCA_000583795_00026 - 597 5.4e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pGCA_000583795_00026 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_000583795_00026 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_000583795_00026 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_000583795_00026 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pGCA_000583795_00026 - 597 0.0088 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 pGCA_000583795_00026 - 597 0.0088 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pGCA_000583795_00026 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_000583795_00026 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pGCA_000583795_00026 - 597 0.21 11.7 2.2 1 1 0.00042 1.1 9.4 2.2 1 29 35 63 35 536 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pGCA_000583795_00026 - 597 0.37 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pGCA_000583795_00026 - 597 0.37 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pGCA_000583795_00026 - 597 0.37 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 pGCA_000583795_00027 - 339 1.3e-33 116.2 0.8 1 1 7.4e-37 2.2e-33 115.4 0.8 2 146 138 280 137 280 0.96 Resolvase, N terminal domain CRISPR_Cas2 PF09827.9 76 pGCA_000583795_00027 - 339 0.0016 18.5 0.0 1 1 5.5e-06 0.016 15.3 0.0 5 54 8 68 5 82 0.78 CRISPR associated protein Cas2 PAS_11 PF14598.6 113 pGCA_000583795_00027 - 339 0.0032 17.6 1.2 1 2 7.7e-06 0.023 14.8 0.4 28 110 88 170 79 171 0.89 PAS domain PAS_11 PF14598.6 113 pGCA_000583795_00027 - 339 0.0032 17.6 1.2 2 2 0.2 5.9e+02 0.6 0.0 28 48 300 320 292 328 0.81 PAS domain Occludin_ELL PF07303.13 101 pGCA_000583795_00027 - 339 0.12 13.1 9.1 1 2 2.7 8.1e+03 -2.4 0.0 47 47 51 51 14 81 0.54 Occludin homology domain Occludin_ELL PF07303.13 101 pGCA_000583795_00027 - 339 0.12 13.1 9.1 2 2 1.4e-05 0.043 14.5 6.0 4 90 100 195 98 197 0.91 Occludin homology domain HTH_38 PF13936.6 44 pGCA_000583795_00027 - 339 0.2 11.5 1.5 1 3 4.3 1.3e+04 -3.9 0.1 8 19 182 193 182 196 0.76 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_000583795_00027 - 339 0.2 11.5 1.5 2 3 0.0073 22 4.9 0.0 3 35 253 286 252 289 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_000583795_00027 - 339 0.2 11.5 1.5 3 3 0.01 31 4.5 0.0 11 26 297 312 293 315 0.88 Helix-turn-helix domain Pox_A_type_inc PF04508.12 23 pGCA_000583795_00027 - 339 6.5 6.8 6.9 1 2 2.1 6.4e+03 -2.7 0.2 1 12 148 159 148 159 0.75 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_000583795_00027 - 339 6.5 6.8 6.9 2 2 0.00032 0.97 9.4 2.1 4 17 181 194 181 196 0.92 Viral A-type inclusion protein repeat TrbC PF04956.13 99 pGCA_000583795_00029 - 87 1.5e-14 54.0 8.5 1 1 1.7e-18 1.6e-14 53.9 8.5 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pGCA_000583795_00029 - 87 0.056 13.3 4.3 1 1 8.2e-06 0.073 12.9 4.2 76 135 35 87 12 87 0.71 Uncharacterized protein conserved in bacteria (DUF2062) VirB3 PF05101.13 84 pGCA_000583795_00030 - 53 2e-13 50.4 1.9 1 1 1.2e-17 2.1e-13 50.3 1.9 2 51 3 52 2 53 0.94 Type IV secretory pathway, VirB3-like protein CagE_TrbE_VirB PF03135.14 206 pGCA_000583795_00031 - 869 3.7e-51 174.2 0.6 1 1 9.3e-55 8.4e-51 173.0 0.6 2 206 224 429 223 429 0.98 CagE, TrbE, VirB family, component of type IV transporter system HNOBA PF07701.14 221 pGCA_000583795_00031 - 869 0.039 13.4 0.1 1 1 9.5e-06 0.085 12.3 0.1 53 153 571 791 569 802 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pGCA_000583795_00032 - 185 3.1e-31 107.8 0.1 1 1 2.8e-35 5e-31 107.1 0.1 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) FapA PF03961.13 454 pGCA_000583795_00033 - 226 0.0039 15.9 6.9 1 1 1.3e-06 0.0039 15.9 6.9 332 412 3 89 1 140 0.82 Flagellar Assembly Protein A Ax_dynein_light PF10211.9 187 pGCA_000583795_00033 - 226 0.028 14.3 4.0 1 2 9.5e-06 0.028 14.3 4.0 121 182 3 64 1 69 0.87 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pGCA_000583795_00033 - 226 0.028 14.3 4.0 2 2 0.26 7.8e+02 -0.1 1.0 116 116 194 194 128 226 0.55 Axonemal dynein light chain Fib_alpha PF08702.10 143 pGCA_000583795_00033 - 226 0.6 10.3 12.2 1 3 2e-05 0.061 13.5 4.9 30 97 3 67 1 87 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_000583795_00033 - 226 0.6 10.3 12.2 2 3 0.84 2.5e+03 -1.4 0.0 82 121 109 149 79 160 0.62 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_000583795_00033 - 226 0.6 10.3 12.2 3 3 0.2 6.1e+02 0.5 0.2 34 56 196 218 178 225 0.65 Fibrinogen alpha/beta chain family DivIC PF04977.15 80 pGCA_000583795_00033 - 226 1.7 8.4 11.6 1 3 0.00031 0.92 9.3 2.0 21 52 5 36 2 48 0.84 Septum formation initiator DivIC PF04977.15 80 pGCA_000583795_00033 - 226 1.7 8.4 11.6 2 3 0.011 32 4.4 0.1 35 65 55 85 40 86 0.82 Septum formation initiator DivIC PF04977.15 80 pGCA_000583795_00033 - 226 1.7 8.4 11.6 3 3 0.47 1.4e+03 -0.9 0.5 21 41 194 214 188 223 0.73 Septum formation initiator Striatin PF08232.12 155 pGCA_000583795_00033 - 226 4.6 7.8 9.6 1 1 0.0047 14 6.2 9.6 29 88 5 69 3 225 0.72 Striatin family Syntaxin-6_N PF09177.11 99 pGCA_000583795_00033 - 226 9.3 6.9 10.2 1 2 0.00059 1.8 9.2 4.5 44 70 4 46 2 87 0.71 Syntaxin 6, N-terminal Syntaxin-6_N PF09177.11 99 pGCA_000583795_00033 - 226 9.3 6.9 10.2 2 2 0.58 1.7e+03 -0.4 0.3 47 47 196 196 140 225 0.54 Syntaxin 6, N-terminal SSB PF00436.25 104 pGCA_000583795_00035 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pGCA_000583795_00036 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pGCA_000583795_00036 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pGCA_000583795_00036 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pGCA_000583795_00036 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pGCA_000583795_00036 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pGCA_000583795_00036 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pGCA_000583795_00036 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pGCA_000583795_00037 - 218 3.9e-12 47.0 0.4 1 1 5.4e-16 4.8e-12 46.7 0.4 1 104 94 210 94 218 0.84 Type IV secretion system proteins GldM_N PF12081.8 194 pGCA_000583795_00037 - 218 0.033 14.3 0.5 1 1 6.1e-06 0.054 13.6 0.5 32 83 104 157 100 201 0.87 GldM N-terminal domain T4SS PF07996.11 197 pGCA_000583795_00038 - 104 3.3e-10 40.7 11.1 1 1 1.3e-13 3.8e-10 40.5 11.1 120 194 6 80 1 82 0.94 Type IV secretion system proteins AATF-Che1 PF13339.6 139 pGCA_000583795_00038 - 104 0.0044 17.7 2.4 1 1 1.7e-06 0.0052 17.5 2.4 52 119 10 91 2 100 0.73 Apoptosis antagonizing transcription factor DHR10 PF18595.1 117 pGCA_000583795_00038 - 104 0.023 14.7 5.2 1 1 1.1e-05 0.031 14.3 5.2 36 104 14 81 6 88 0.86 Designed helical repeat protein 10 domain Occludin_ELL PF07303.13 101 pGCA_000583795_00038 - 104 0.032 14.9 0.6 1 2 1.1e-05 0.032 14.9 0.6 17 71 6 59 4 70 0.85 Occludin homology domain Occludin_ELL PF07303.13 101 pGCA_000583795_00038 - 104 0.032 14.9 0.6 2 2 0.16 4.7e+02 1.6 0.2 3 20 76 93 74 94 0.87 Occludin homology domain VWA_2 PF13519.6 107 pGCA_000583795_00038 - 104 0.067 13.8 1.1 1 1 3.4e-05 0.1 13.3 0.8 41 84 2 52 1 77 0.86 von Willebrand factor type A domain Snapin_Pallidin PF14712.6 90 pGCA_000583795_00038 - 104 0.1 13.0 5.1 1 1 9.4e-05 0.28 11.6 5.1 30 83 21 75 8 82 0.88 Snapin/Pallidin TrbL PF04610.14 215 pGCA_000583795_00039 - 332 8.7e-32 110.6 33.1 1 2 9.7e-36 8.7e-32 110.6 33.1 1 214 40 252 40 253 0.94 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pGCA_000583795_00039 - 332 8.7e-32 110.6 33.1 2 2 0.5 4.5e+03 -2.8 0.1 84 84 290 290 260 328 0.50 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pGCA_000583795_00039 - 332 0.029 14.2 1.4 1 2 0.33 2.9e+03 -1.9 0.1 39 50 71 82 62 110 0.55 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pGCA_000583795_00039 - 332 0.029 14.2 1.4 2 2 6.2e-06 0.055 13.3 0.1 14 81 222 288 201 300 0.67 T-cell leukemia translocation-altered Trep_dent_lipo PF09710.10 397 pGCA_000583795_00040 - 54 0.034 13.1 1.0 1 1 5.2e-06 0.031 13.2 1.0 3 25 3 24 1 53 0.80 Treponema clustered lipoprotein (Trep_dent_lipo) La_HTH_kDCL PF18177.1 90 pGCA_000583795_00040 - 54 0.19 12.0 0.0 1 1 3.6e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain PsbT PF01405.17 29 pGCA_000583795_00040 - 54 1.1 9.1 5.2 1 1 0.00027 1.6 8.6 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pGCA_000583795_00041 - 219 1.6e-52 178.5 0.5 1 1 1.9e-56 1.7e-52 178.4 0.5 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pGCA_000583795_00041 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pGCA_000583795_00042 - 296 4.2e-56 190.0 1.7 1 1 1.1e-59 6.7e-56 189.3 1.7 2 211 31 271 30 271 0.92 Conjugal transfer protein TraE PF05309.11 182 pGCA_000583795_00042 - 296 0.022 14.2 0.1 1 1 6.6e-06 0.039 13.3 0.1 107 171 89 154 86 161 0.83 TraE protein Rho_RNA_bind PF07497.12 73 pGCA_000583795_00042 - 296 0.068 13.0 0.0 1 2 1.5 9.2e+03 -3.4 0.0 9 22 79 92 76 97 0.79 Rho termination factor, RNA-binding domain Rho_RNA_bind PF07497.12 73 pGCA_000583795_00042 - 296 0.068 13.0 0.0 2 2 3.3e-05 0.2 11.6 0.0 21 49 241 269 232 288 0.84 Rho termination factor, RNA-binding domain TrbI PF03743.14 187 pGCA_000583795_00043 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.4e+03 -3.4 0.3 136 154 140 166 120 172 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pGCA_000583795_00043 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pGCA_000583795_00043 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease T2SSE PF00437.20 273 pGCA_000583795_00044 - 335 1.5e-54 184.9 0.0 1 1 3.1e-57 1.7e-54 184.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pGCA_000583795_00044 - 335 7e-05 23.4 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_000583795_00044 - 335 0.00011 21.6 0.0 1 1 3.1e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pGCA_000583795_00044 - 335 0.00029 20.4 0.0 1 1 9.1e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pGCA_000583795_00044 - 335 0.0014 18.9 0.0 1 1 4.6e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 pGCA_000583795_00044 - 335 0.0014 18.4 0.0 1 1 4e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pGCA_000583795_00044 - 335 0.0025 17.6 0.0 1 1 9.5e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pGCA_000583795_00044 - 335 0.0035 17.3 0.0 1 1 1.3e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pGCA_000583795_00044 - 335 0.0055 15.7 0.0 1 1 1.4e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pGCA_000583795_00044 - 335 0.0073 16.2 0.0 1 1 2.2e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pGCA_000583795_00044 - 335 0.0087 15.4 0.0 1 1 2.5e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pGCA_000583795_00044 - 335 0.0092 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pGCA_000583795_00044 - 335 0.019 15.1 0.0 1 1 6.3e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 pGCA_000583795_00044 - 335 0.021 13.8 0.0 1 1 6.1e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 pGCA_000583795_00044 - 335 0.022 14.8 0.1 1 1 9.7e-05 0.054 13.5 0.0 5 50 147 186 135 244 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 pGCA_000583795_00044 - 335 0.024 14.4 0.0 1 1 9e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 pGCA_000583795_00044 - 335 0.026 14.2 0.0 1 1 9.6e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pGCA_000583795_00044 - 335 0.037 13.5 0.0 1 1 0.00011 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 pGCA_000583795_00044 - 335 0.039 14.0 0.1 1 1 0.00019 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 pGCA_000583795_00044 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pGCA_000583795_00044 - 335 0.046 13.0 0.0 1 1 0.00014 0.08 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin RNA_helicase PF00910.22 107 pGCA_000583795_00044 - 335 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase PRK PF00485.18 197 pGCA_000583795_00044 - 335 0.056 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pGCA_000583795_00044 - 335 0.066 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pGCA_000583795_00044 - 335 0.074 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pGCA_000583795_00044 - 335 0.088 12.7 0.0 1 1 0.00035 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pGCA_000583795_00044 - 335 0.097 12.6 0.5 1 1 0.00043 0.24 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 pGCA_000583795_00044 - 335 0.11 12.4 0.1 1 1 0.00041 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 pGCA_000583795_00044 - 335 0.13 12.8 0.1 1 1 0.00069 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 pGCA_000583795_00044 - 335 0.15 11.7 0.0 1 1 0.00042 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pGCA_000583795_00044 - 335 0.15 11.8 0.0 1 1 0.00043 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pGCA_000583795_00044 - 335 0.35 11.3 3.8 1 2 2.6 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 pGCA_000583795_00044 - 335 0.35 11.3 3.8 2 2 0.00066 0.37 11.3 1.3 22 37 163 178 160 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pGCA_000583795_00045 - 603 1e-105 354.3 0.1 1 1 3.1e-109 1.4e-105 353.8 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_000583795_00045 - 603 1.1e-24 86.8 0.0 1 1 4.9e-28 2.2e-24 85.8 0.0 2 125 406 528 405 529 0.88 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pGCA_000583795_00045 - 603 6.5e-16 58.2 0.0 1 2 1.6e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_000583795_00045 - 603 6.5e-16 58.2 0.0 2 2 2.7e-14 1.2e-10 40.9 0.0 187 370 347 532 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 pGCA_000583795_00045 - 603 0.2 11.7 0.2 1 1 7.7e-05 0.34 10.9 0.2 37 93 9 87 3 100 0.78 Putative Actinobacterial Holin-X, holin superfamily III Cag12 PF13117.6 97 pGCA_000583795_00046 - 143 2.9e-16 59.8 0.3 1 1 4.1e-20 3.7e-16 59.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pGCA_000583795_00046 - 143 0.078 12.8 0.4 1 1 2.3e-05 0.2 11.4 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 pGCA_000583795_00047 - 183 1.1e-36 126.1 1.8 1 1 7.5e-41 1.3e-36 125.8 1.8 1 136 25 170 25 181 0.89 TrbM PRELI PF04707.14 157 pGCA_000583795_00048 - 266 0.03 14.1 2.2 1 2 0.49 1.8e+03 -1.4 0.1 122 129 35 42 4 73 0.51 PRELI-like family PRELI PF04707.14 157 pGCA_000583795_00048 - 266 0.03 14.1 2.2 2 2 9.1e-06 0.033 14.0 0.3 96 155 84 148 79 150 0.87 PRELI-like family TACC_C PF05010.14 201 pGCA_000583795_00048 - 266 2.4 7.9 10.1 1 2 0.0014 5 6.9 8.4 13 125 2 113 1 138 0.78 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 pGCA_000583795_00048 - 266 2.4 7.9 10.1 2 2 0.13 4.6e+02 0.5 3.0 8 45 101 140 90 181 0.55 Transforming acidic coiled-coil-containing protein (TACC), C-terminal NdhM PF10664.9 107 pGCA_000583795_00048 - 266 2.5 8.4 6.1 1 3 0.016 57 4.0 0.3 43 88 5 50 1 61 0.75 Cyanobacterial and plastid NDH-1 subunit M NdhM PF10664.9 107 pGCA_000583795_00048 - 266 2.5 8.4 6.1 2 3 0.023 82 3.5 0.8 32 78 91 136 88 152 0.77 Cyanobacterial and plastid NDH-1 subunit M NdhM PF10664.9 107 pGCA_000583795_00048 - 266 2.5 8.4 6.1 3 3 0.033 1.2e+02 3.0 0.1 61 94 137 170 124 175 0.81 Cyanobacterial and plastid NDH-1 subunit M IFT20 PF14931.6 119 pGCA_000583795_00048 - 266 4.8 7.4 10.0 1 3 0.15 5.2e+02 0.8 0.3 25 46 24 45 1 56 0.50 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 pGCA_000583795_00048 - 266 4.8 7.4 10.0 2 3 0.00036 1.3 9.2 0.8 25 54 90 119 80 127 0.89 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 pGCA_000583795_00048 - 266 4.8 7.4 10.0 3 3 0.04 1.4e+02 2.6 0.4 23 43 121 141 115 178 0.80 Intraflagellar transport complex B, subunit 20 Mod_r PF07200.13 146 pGCA_000583795_00048 - 266 8.2 6.5 12.0 1 2 0.024 85 3.2 9.1 10 135 15 161 2 165 0.62 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 pGCA_000583795_00048 - 266 8.2 6.5 12.0 2 2 0.47 1.7e+03 -1.0 0.0 65 88 207 230 204 259 0.71 Modifier of rudimentary (Mod(r)) protein CdhD PF03599.16 386 pGCA_000583795_00049 - 246 0.002 16.9 0.0 1 1 5.3e-07 0.0031 16.3 0.0 269 358 39 127 30 136 0.86 CO dehydrogenase/acetyl-CoA synthase delta subunit Pox_RNA_pol PF03293.14 160 pGCA_000583795_00049 - 246 0.012 15.3 0.9 1 1 4.5e-06 0.027 14.2 0.9 35 158 20 138 7 140 0.83 Poxvirus DNA-directed RNA polymerase, 18 kD subunit Redoxin PF08534.10 147 pGCA_000583795_00049 - 246 0.059 13.1 0.5 1 2 0.079 4.7e+02 0.4 0.0 117 146 49 76 31 77 0.79 Redoxin Redoxin PF08534.10 147 pGCA_000583795_00049 - 246 0.059 13.1 0.5 2 2 7.9e-05 0.47 10.2 0.1 49 76 184 213 178 230 0.79 Redoxin DUF1461 PF07314.11 189 pGCA_000583795_00050 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) Topoisom_bac PF01131.20 413 pGCA_000583795_00051 - 730 9e-97 324.7 8.0 1 1 1.2e-99 1.3e-96 324.2 8.0 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pGCA_000583795_00051 - 730 9.7e-12 45.0 0.1 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pGCA_000583795_00051 - 730 9.7e-12 45.0 0.1 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pGCA_000583795_00051 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pGCA_000583795_00051 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pGCA_000583795_00051 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_000583795_00051 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_000583795_00051 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pGCA_000583795_00051 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pGCA_000583795_00051 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pGCA_000583795_00051 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pGCA_000583795_00051 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pGCA_000583795_00051 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pGCA_000583795_00051 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain EF-hand_8 PF13833.6 55 pGCA_000583795_00051 - 730 0.052 13.4 0.2 1 2 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair EF-hand_8 PF13833.6 55 pGCA_000583795_00051 - 730 0.052 13.4 0.2 2 2 1.7 1.8e+03 -1.2 0.0 24 36 342 354 332 355 0.83 EF-hand domain pair zf-C2H2_4 PF13894.6 24 pGCA_000583795_00051 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pGCA_000583795_00051 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pGCA_000583795_00051 - 730 0.086 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pGCA_000583795_00051 - 730 0.086 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 pGCA_000583795_00051 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pGCA_000583795_00051 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pGCA_000583795_00051 - 730 0.38 11.0 3.0 1 3 1.9 2e+03 -1.0 0.0 26 47 362 383 354 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_000583795_00051 - 730 0.38 11.0 3.0 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_000583795_00051 - 730 0.38 11.0 3.0 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pGCA_000583795_00051 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pGCA_000583795_00051 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pGCA_000583795_00051 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_000583795_00051 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pGCA_000583795_00051 - 730 0.76 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pGCA_000583795_00051 - 730 0.76 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pGCA_000583795_00051 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pGCA_000583795_00051 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pGCA_000583795_00051 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pGCA_000583795_00051 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pGCA_000583795_00053 - 404 3.9e-05 23.6 2.2 1 1 1.1e-08 0.0001 22.2 2.2 4 133 262 387 259 397 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pGCA_000583795_00053 - 404 0.02 14.9 4.4 1 1 1.8e-05 0.16 11.9 4.4 37 125 242 375 142 383 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pGCA_000583795_00055 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pGCA_000583795_00055 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pGCA_000583795_00055 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pGCA_000583795_00055 - 639 1.2e-16 60.5 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pGCA_000583795_00055 - 639 3e-12 46.4 0.1 1 1 3.5e-15 6.9e-12 45.3 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pGCA_000583795_00055 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pGCA_000583795_00055 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pGCA_000583795_00055 - 639 0.019 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pGCA_000583795_00055 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pGCA_000583795_00055 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family TraC_F_IV PF11130.8 238 pGCA_000736415_00001 - 830 7.6e-30 104.3 0.0 1 1 6.3e-33 1.4e-29 103.4 0.0 2 237 29 251 28 252 0.92 F pilus assembly Type-IV secretion system for plasmid transfer AAA_10 PF12846.7 362 pGCA_000736415_00001 - 830 3.3e-10 39.4 0.0 1 1 7.4e-13 1.7e-09 37.1 0.0 23 292 455 716 450 741 0.78 AAA-like domain TrwB_AAD_bind PF10412.9 386 pGCA_000736415_00001 - 830 0.00074 18.5 0.0 1 2 0.00072 1.6 7.5 0.0 19 85 457 522 442 547 0.75 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_000736415_00001 - 830 0.00074 18.5 0.0 2 2 0.00036 0.8 8.5 0.0 225 286 645 711 620 740 0.79 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 137 pGCA_000736415_00001 - 830 0.0072 16.6 0.1 1 3 0.98 2.2e+03 -1.2 0.0 106 135 74 98 64 100 0.77 AAA domain AAA_22 PF13401.6 137 pGCA_000736415_00001 - 830 0.0072 16.6 0.1 2 3 0.016 36 4.6 0.0 9 25 457 473 455 491 0.90 AAA domain AAA_22 PF13401.6 137 pGCA_000736415_00001 - 830 0.0072 16.6 0.1 3 3 0.0018 4.1 7.7 0.0 84 128 653 703 644 709 0.72 AAA domain Zot PF05707.12 194 pGCA_000736415_00001 - 830 0.012 15.2 0.0 1 1 1.2e-05 0.026 14.1 0.0 84 131 667 711 652 721 0.86 Zonular occludens toxin (Zot) FH2 PF02181.23 372 pGCA_000736415_00001 - 830 0.016 14.4 1.1 1 2 0.0084 19 4.2 0.3 310 368 94 152 73 156 0.93 Formin Homology 2 Domain FH2 PF02181.23 372 pGCA_000736415_00001 - 830 0.016 14.4 1.1 2 2 0.00046 1 8.4 0.0 64 113 543 594 518 608 0.86 Formin Homology 2 Domain CbiA PF01656.23 128 pGCA_000736415_00001 - 830 0.039 14.0 0.0 1 1 4.5e-05 0.1 12.7 0.0 7 55 461 561 458 715 0.75 CobQ/CobB/MinD/ParA nucleotide binding domain UPF0181 PF03701.14 50 pGCA_000736415_00001 - 830 0.22 11.2 0.5 1 2 4.9 1.1e+04 -3.8 0.0 34 47 96 109 93 111 0.83 Uncharacterised protein family (UPF0181) UPF0181 PF03701.14 50 pGCA_000736415_00001 - 830 0.22 11.2 0.5 2 2 0.0003 0.67 9.6 0.1 19 40 807 828 805 828 0.94 Uncharacterised protein family (UPF0181) TrbI_Ftype PF09677.10 106 pGCA_000736415_00002 - 122 2.1e-05 24.8 1.3 1 1 1.4e-09 2.5e-05 24.6 1.3 56 100 65 110 6 116 0.87 Type-F conjugative transfer system protein (TrbI_Ftype) Peptidase_S26 PF10502.9 138 pGCA_000736415_00003 - 165 2.2e-13 50.2 0.0 1 1 1.9e-17 3.4e-13 49.6 0.0 19 133 55 161 36 164 0.88 Signal peptidase, peptidase S26 TraH PF06122.11 361 pGCA_000736415_00004 - 478 5.6e-68 229.8 2.0 1 1 4.4e-72 7.8e-68 229.4 2.0 6 354 32 386 26 393 0.79 Conjugative relaxosome accessory transposon protein TraN PF06986.11 240 pGCA_000736415_00006 - 718 4.3e-29 101.9 9.8 1 5 1 1.8e+04 -7.1 9.8 9 87 252 326 245 344 0.66 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 pGCA_000736415_00006 - 718 4.3e-29 101.9 9.8 2 5 0.24 4.3e+03 -2.9 0.1 61 76 362 377 350 395 0.81 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 pGCA_000736415_00006 - 718 4.3e-29 101.9 9.8 3 5 1 1.8e+04 -5.3 5.4 29 73 407 446 376 485 0.55 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 pGCA_000736415_00006 - 718 4.3e-29 101.9 9.8 4 5 0.0013 23 4.6 6.9 42 77 480 517 469 541 0.81 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 pGCA_000736415_00006 - 718 4.3e-29 101.9 9.8 5 5 2.4e-33 4.3e-29 101.9 9.8 131 240 550 667 523 667 0.82 Type-1V conjugative transfer system mating pair stabilisation Staphylokinase PF02821.16 126 pGCA_000736415_00011 - 121 0.075 13.5 5.2 1 2 0.00014 2.6 8.5 1.5 33 62 10 37 2 46 0.80 Staphylokinase/Streptokinase family Staphylokinase PF02821.16 126 pGCA_000736415_00011 - 121 0.075 13.5 5.2 2 2 0.00047 8.4 6.9 0.1 40 77 48 83 44 104 0.82 Staphylokinase/Streptokinase family HTH_19 PF12844.7 65 pGCA_000736415_00013 - 123 9.4e-08 32.0 0.6 1 2 1.6e-10 3.6e-07 30.1 0.2 3 60 20 77 19 78 0.97 Helix-turn-helix domain HTH_19 PF12844.7 65 pGCA_000736415_00013 - 123 9.4e-08 32.0 0.6 2 2 0.56 1.3e+03 -0.5 0.0 26 35 98 107 80 119 0.68 Helix-turn-helix domain HTH_3 PF01381.22 55 pGCA_000736415_00013 - 123 3.1e-06 27.1 0.2 1 1 2.6e-09 5.9e-06 26.2 0.2 1 55 21 76 21 76 0.93 Helix-turn-helix HTH_26 PF13443.6 63 pGCA_000736415_00013 - 123 0.0061 17.0 0.0 1 1 4.4e-06 0.0099 16.3 0.0 11 55 30 74 20 79 0.90 Cro/C1-type HTH DNA-binding domain Phage_CI_repr PF07022.13 65 pGCA_000736415_00013 - 123 0.012 15.7 0.0 1 1 8.1e-06 0.018 15.1 0.0 11 63 28 82 21 84 0.87 Bacteriophage CI repressor helix-turn-helix domain HTH_25 PF13413.6 62 pGCA_000736415_00013 - 123 0.014 15.2 0.0 1 1 1.3e-05 0.028 14.3 0.0 5 42 24 61 20 75 0.84 Helix-turn-helix domain Pup PF05639.11 68 pGCA_000736415_00013 - 123 0.02 15.8 0.3 1 1 1.7e-05 0.038 14.9 0.3 18 51 86 119 80 121 0.80 Pup-like protein Nbl1_Borealin_N PF10444.9 57 pGCA_000736415_00013 - 123 0.047 13.3 2.8 1 3 0.04 90 2.8 0.1 10 39 13 43 8 46 0.80 Nbl1 / Borealin N terminal Nbl1_Borealin_N PF10444.9 57 pGCA_000736415_00013 - 123 0.047 13.3 2.8 2 3 2.6 5.8e+03 -3.0 0.0 28 37 62 71 60 74 0.53 Nbl1 / Borealin N terminal Nbl1_Borealin_N PF10444.9 57 pGCA_000736415_00013 - 123 0.047 13.3 2.8 3 3 0.00016 0.37 10.5 0.2 13 38 97 122 86 123 0.89 Nbl1 / Borealin N terminal DUF16 PF01519.16 104 pGCA_000736415_00013 - 123 0.16 12.5 3.8 1 2 0.072 1.6e+02 2.8 0.3 35 78 13 54 4 76 0.58 Protein of unknown function DUF16 DUF16 PF01519.16 104 pGCA_000736415_00013 - 123 0.16 12.5 3.8 2 2 0.00018 0.41 11.2 0.3 29 54 94 119 80 123 0.82 Protein of unknown function DUF16 zf-ACC PF17848.1 26 pGCA_000736415_00016 - 81 0.0036 17.3 4.1 1 2 0.0024 2.4 8.3 0.3 2 9 11 18 11 28 0.75 Acetyl-coA carboxylase zinc finger domain zf-ACC PF17848.1 26 pGCA_000736415_00016 - 81 0.0036 17.3 4.1 2 2 0.0008 0.8 9.8 0.4 2 12 41 50 41 55 0.76 Acetyl-coA carboxylase zinc finger domain zf-ribbon_3 PF13248.6 26 pGCA_000736415_00016 - 81 0.0069 15.8 2.9 1 2 0.0018 1.8 8.1 0.2 17 25 11 19 6 19 0.82 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pGCA_000736415_00016 - 81 0.0069 15.8 2.9 2 2 0.0019 1.9 8.0 0.2 3 11 41 49 39 52 0.74 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 43 pGCA_000736415_00016 - 81 0.0087 15.6 2.4 1 2 0.00078 0.77 9.3 0.4 2 18 12 28 11 31 0.84 TFIIB zinc-binding TF_Zn_Ribbon PF08271.12 43 pGCA_000736415_00016 - 81 0.0087 15.6 2.4 2 2 0.0064 6.4 6.4 0.1 21 28 42 49 37 59 0.78 TFIIB zinc-binding tRNA-synt_1g PF09334.11 391 pGCA_000736415_00016 - 81 0.021 13.6 0.7 1 1 2.4e-05 0.024 13.4 0.7 136 175 10 49 2 59 0.87 tRNA synthetases class I (M) zf-ISL3 PF14690.6 47 pGCA_000736415_00016 - 81 0.023 15.4 1.2 1 2 0.00026 0.26 12.0 0.1 4 28 12 35 9 38 0.80 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ISL3 PF14690.6 47 pGCA_000736415_00016 - 81 0.023 15.4 1.2 2 2 0.21 2.1e+02 2.7 0.1 3 12 41 51 39 69 0.79 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.10 40 pGCA_000736415_00016 - 81 0.031 14.4 0.3 1 2 0.0059 5.9 7.1 0.1 21 34 4 18 1 22 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pGCA_000736415_00016 - 81 0.031 14.4 0.3 2 2 0.018 18 5.5 0.0 7 15 42 50 34 59 0.77 Zinc ribbon domain zinc_ribbon_5 PF13719.6 37 pGCA_000736415_00016 - 81 0.032 14.0 1.0 1 3 0.011 11 5.9 0.0 4 11 12 19 10 31 0.85 zinc-ribbon domain zinc_ribbon_5 PF13719.6 37 pGCA_000736415_00016 - 81 0.032 14.0 1.0 2 3 0.0064 6.4 6.6 0.0 27 37 42 52 37 52 0.87 zinc-ribbon domain zinc_ribbon_5 PF13719.6 37 pGCA_000736415_00016 - 81 0.032 14.0 1.0 3 3 5.5 5.5e+03 -2.8 0.0 13 18 71 76 68 80 0.61 zinc-ribbon domain zf-LITAF-like PF10601.9 70 pGCA_000736415_00016 - 81 0.064 13.5 1.4 1 2 0.015 15 6.0 0.3 54 64 8 18 4 23 0.65 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pGCA_000736415_00016 - 81 0.064 13.5 1.4 2 2 0.0074 7.3 6.9 0.0 3 26 38 61 36 71 0.83 LITAF-like zinc ribbon domain Elf1 PF05129.13 78 pGCA_000736415_00016 - 81 0.09 12.8 2.1 1 2 7.6e-05 0.075 13.1 0.9 20 63 9 58 2 60 0.81 Transcription elongation factor Elf1 like Elf1 PF05129.13 78 pGCA_000736415_00016 - 81 0.09 12.8 2.1 2 2 9.8 9.8e+03 -3.3 0.0 21 26 66 71 65 75 0.72 Transcription elongation factor Elf1 like zf-C2H2_4 PF13894.6 24 pGCA_000736415_00016 - 81 0.09 13.7 1.8 1 2 0.019 19 6.4 0.2 2 10 12 21 11 26 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pGCA_000736415_00016 - 81 0.09 13.7 1.8 2 2 0.019 19 6.4 0.1 2 11 42 51 41 58 0.82 C2H2-type zinc finger zf-C2H2_3 PF13878.6 40 pGCA_000736415_00016 - 81 0.1 12.4 1.6 1 2 0.099 98 2.9 0.1 12 20 9 17 4 23 0.78 zinc-finger of acetyl-transferase ESCO zf-C2H2_3 PF13878.6 40 pGCA_000736415_00016 - 81 0.1 12.4 1.6 2 2 0.0014 1.4 8.8 0.1 4 25 33 52 32 56 0.74 zinc-finger of acetyl-transferase ESCO DUF4379 PF14311.6 56 pGCA_000736415_00016 - 81 0.13 12.6 6.2 1 2 0.081 80 3.7 0.2 47 56 9 16 2 16 0.67 Probable Zinc-ribbon domain DUF4379 PF14311.6 56 pGCA_000736415_00016 - 81 0.13 12.6 6.2 2 2 0.00049 0.49 10.8 1.4 5 47 23 58 18 71 0.67 Probable Zinc-ribbon domain DUF35_N PF12172.8 37 pGCA_000736415_00016 - 81 0.18 11.7 2.4 1 2 0.028 28 4.7 0.1 27 33 12 18 9 22 0.75 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35_N PF12172.8 37 pGCA_000736415_00016 - 81 0.18 11.7 2.4 2 2 0.0052 5.2 7.0 0.3 12 21 41 50 41 50 0.89 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 23 pGCA_000736415_00016 - 81 0.22 11.3 4.3 1 2 0.0098 9.7 6.1 0.4 1 6 12 17 5 19 0.74 zinc-ribbon domain zinc_ribbon_2 PF13240.6 23 pGCA_000736415_00016 - 81 0.22 11.3 4.3 2 2 0.0086 8.6 6.2 0.3 1 7 42 48 40 52 0.79 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_000736415_00016 - 81 0.25 11.3 4.7 1 2 0.0083 8.3 6.4 0.7 4 14 12 22 10 33 0.78 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_000736415_00016 - 81 0.25 11.3 4.7 2 2 0.007 7 6.7 0.2 26 35 41 50 28 51 0.77 zinc-ribbon domain CpXC PF14353.6 118 pGCA_000736415_00016 - 81 0.25 11.4 2.4 1 1 0.0012 1.2 9.2 2.4 2 51 12 54 11 69 0.82 CpXC protein Zn_Tnp_IS91 PF14319.6 91 pGCA_000736415_00016 - 81 0.36 10.9 4.1 1 2 0.001 1 9.4 0.4 56 82 9 35 2 41 0.78 Transposase zinc-binding domain Zn_Tnp_IS91 PF14319.6 91 pGCA_000736415_00016 - 81 0.36 10.9 4.1 2 2 0.094 94 3.1 0.2 58 69 41 52 37 69 0.73 Transposase zinc-binding domain Zn_Tnp_IS1595 PF12760.7 46 pGCA_000736415_00016 - 81 0.66 10.0 5.5 1 2 0.0052 5.1 7.1 3.1 19 43 11 46 1 49 0.63 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 pGCA_000736415_00016 - 81 0.66 10.0 5.5 2 2 0.027 27 4.8 0.5 20 40 42 69 24 71 0.69 Transposase zinc-ribbon domain Phage_integrase PF00589.22 172 pGCA_000736415_00017 - 328 4.8e-23 81.8 0.1 1 1 2.5e-26 8.8e-23 80.9 0.1 2 170 138 312 137 313 0.86 Phage integrase family Phage_int_SAM_4 PF13495.6 85 pGCA_000736415_00017 - 328 0.0021 18.5 8.6 1 3 0.00012 0.42 11.1 0.3 2 50 16 68 15 84 0.72 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pGCA_000736415_00017 - 328 0.0021 18.5 8.6 2 3 5.7e-05 0.2 12.1 0.7 12 37 86 110 80 170 0.81 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pGCA_000736415_00017 - 328 0.0021 18.5 8.6 3 3 2.5 9e+03 -2.8 0.1 9 21 297 309 293 312 0.79 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pGCA_000736415_00017 - 328 0.0042 17.4 0.3 1 1 6.5e-06 0.023 15.0 0.3 11 79 25 106 17 111 0.80 Phage integrase, N-terminal SAM-like domain TSNAXIP1_N PF15739.5 111 pGCA_000736415_00017 - 328 0.11 12.8 1.6 1 1 8e-05 0.29 11.5 1.3 19 83 29 96 17 114 0.78 Translin-associated factor X-interacting N-terminus Phage_int_SAM_3 PF14659.6 58 pGCA_000736415_00017 - 328 0.99 9.7 6.9 1 3 0.00019 0.67 10.3 0.7 7 50 13 64 8 71 0.69 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_3 PF14659.6 58 pGCA_000736415_00017 - 328 0.99 9.7 6.9 2 3 0.16 5.9e+02 0.8 0.3 16 31 87 102 83 105 0.87 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_3 PF14659.6 58 pGCA_000736415_00017 - 328 0.99 9.7 6.9 3 3 0.64 2.3e+03 -1.0 0.0 36 44 120 128 116 131 0.80 Phage integrase, N-terminal SAM-like domain DUF1566 PF07603.11 115 pGCA_000736415_00018 - 117 0.0015 18.9 0.0 1 1 1.1e-07 0.0019 18.5 0.0 18 115 27 111 8 111 0.79 Protein of unknown function (DUF1566) DUF433 PF04255.14 56 pGCA_000736415_00019 - 68 0.047 13.5 0.0 1 1 7.7e-06 0.069 13.0 0.0 24 53 14 43 5 44 0.88 Protein of unknown function (DUF433) Toxin_YhaV PF11663.8 138 pGCA_000736415_00019 - 68 0.079 13.0 0.0 1 2 1.9e-05 0.17 11.9 0.0 112 136 9 33 2 35 0.85 Toxin with endonuclease activity, of toxin-antitoxin system Toxin_YhaV PF11663.8 138 pGCA_000736415_00019 - 68 0.079 13.0 0.0 2 2 0.33 3e+03 -1.8 0.0 20 23 52 55 38 66 0.42 Toxin with endonuclease activity, of toxin-antitoxin system WGR PF05406.15 80 pGCA_000736415_00023 - 82 6.7e-07 29.3 0.3 1 1 4.9e-11 8.8e-07 28.9 0.3 8 76 12 79 4 82 0.84 WGR domain DUF3951 PF13131.6 52 pGCA_000736415_00027 - 37 0.048 13.9 0.2 1 1 2.7e-06 0.048 13.8 0.2 1 20 1 20 1 30 0.89 Protein of unknown function (DUF3951) DUF4064 PF13273.6 103 pGCA_000736415_00028 - 108 1.1 9.6 10.9 1 1 0.026 2.4e+02 2.1 10.9 16 87 10 105 1 108 0.49 Protein of unknown function (DUF4064) DUF2929 PF11151.8 56 pGCA_000736415_00028 - 108 2.9 8.3 8.4 1 2 0.27 2.4e+03 -1.1 1.2 36 47 10 21 2 30 0.60 Protein of unknown function (DUF2929) DUF2929 PF11151.8 56 pGCA_000736415_00028 - 108 2.9 8.3 8.4 2 2 1.3e-05 0.12 12.7 1.0 9 55 52 102 52 103 0.84 Protein of unknown function (DUF2929) HD_2 PF12917.7 182 pGCA_000736415_00029 - 182 0.00032 20.5 0.1 1 1 3.8e-08 0.00069 19.4 0.1 55 98 64 104 47 136 0.74 HD containing hydrolase-like enzyme CDT1 PF08839.11 175 pGCA_000736415_00031 - 109 0.089 13.1 0.0 1 1 6.5e-06 0.12 12.7 0.0 118 168 10 60 2 64 0.91 DNA replication factor CDT1 like DUF1351 PF07083.11 210 pGCA_000736415_00032 - 350 3.8e-24 85.6 8.0 1 2 8.4e-28 3.8e-24 85.6 8.0 2 180 18 200 17 211 0.91 Protein of unknown function (DUF1351) DUF1351 PF07083.11 210 pGCA_000736415_00032 - 350 3.8e-24 85.6 8.0 2 2 0.25 1.1e+03 -0.8 3.6 78 116 222 260 215 293 0.75 Protein of unknown function (DUF1351) DUF4337 PF14235.6 161 pGCA_000736415_00032 - 350 0.96 9.5 5.4 1 2 0.00047 2.1 8.4 0.7 48 110 34 96 31 114 0.80 Domain of unknown function (DUF4337) DUF4337 PF14235.6 161 pGCA_000736415_00032 - 350 0.96 9.5 5.4 2 2 0.026 1.2e+02 2.8 0.4 72 102 218 249 202 255 0.79 Domain of unknown function (DUF4337) Allexi_40kDa PF05549.11 271 pGCA_000736415_00032 - 350 1.6 8.2 6.9 1 2 3.4e-05 0.15 11.5 1.9 66 155 3 92 1 113 0.90 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pGCA_000736415_00032 - 350 1.6 8.2 6.9 2 2 0.4 1.8e+03 -1.8 0.2 116 144 221 251 202 291 0.49 Allexivirus 40kDa protein KIP1 PF07765.12 74 pGCA_000736415_00032 - 350 8.7 6.5 9.0 1 2 0.00016 0.72 10.0 1.3 9 61 75 128 69 137 0.86 KIP1-like protein KIP1 PF07765.12 74 pGCA_000736415_00032 - 350 8.7 6.5 9.0 2 2 0.23 1e+03 -0.1 1.3 28 55 223 251 214 261 0.51 KIP1-like protein LBR_tudor PF09465.10 55 pGCA_000736415_00033 - 90 0.036 13.9 0.2 1 1 3.2e-06 0.058 13.2 0.2 21 46 49 74 39 78 0.93 Lamin-B receptor of TUDOR domain zf-B_box PF00643.24 42 pGCA_000736415_00034 - 166 0.006 16.7 13.5 1 2 3.8e-06 0.0062 16.7 7.5 4 37 3 38 1 43 0.85 B-box zinc finger zf-B_box PF00643.24 42 pGCA_000736415_00034 - 166 0.006 16.7 13.5 2 2 0.055 89 3.4 0.3 24 30 66 72 57 75 0.63 B-box zinc finger FYVE PF01363.21 68 pGCA_000736415_00034 - 166 0.026 14.6 6.7 1 1 4.1e-05 0.067 13.3 6.9 12 66 2 75 1 77 0.82 FYVE zinc finger DUF4428 PF14471.6 51 pGCA_000736415_00034 - 166 0.069 13.1 0.1 1 2 0.72 1.2e+03 -0.5 2.8 16 26 9 20 2 37 0.76 Domain of unknown function (DUF4428) DUF4428 PF14471.6 51 pGCA_000736415_00034 - 166 0.069 13.1 0.1 2 2 4.2e-05 0.069 13.1 0.1 20 41 65 87 49 92 0.76 Domain of unknown function (DUF4428) zf-C4_ClpX PF06689.13 39 pGCA_000736415_00034 - 166 0.19 11.6 12.5 1 2 0.002 3.3 7.7 4.5 3 31 2 30 1 34 0.89 ClpX C4-type zinc finger zf-C4_ClpX PF06689.13 39 pGCA_000736415_00034 - 166 0.19 11.6 12.5 2 2 0.0011 1.7 8.6 1.0 24 32 66 74 57 77 0.81 ClpX C4-type zinc finger Gin PF10764.9 45 pGCA_000736415_00034 - 166 0.24 11.4 10.0 1 2 0.0066 11 6.1 4.6 1 29 2 34 2 37 0.88 Inhibitor of sigma-G Gin Gin PF10764.9 45 pGCA_000736415_00034 - 166 0.24 11.4 10.0 2 2 0.0021 3.5 7.7 0.2 18 29 66 77 64 90 0.83 Inhibitor of sigma-G Gin zf-RING_2 PF13639.6 44 pGCA_000736415_00034 - 166 0.34 11.3 9.3 1 2 0.0047 7.6 7.0 7.4 2 37 1 36 1 46 0.82 Ring finger domain zf-RING_2 PF13639.6 44 pGCA_000736415_00034 - 166 0.34 11.3 9.3 2 2 0.038 62 4.0 0.1 16 35 54 77 43 79 0.64 Ring finger domain zf-CHY PF05495.12 75 pGCA_000736415_00034 - 166 0.35 11.4 10.0 1 2 0.36 5.8e+02 1.1 5.8 43 63 1 23 1 28 0.65 CHY zinc finger zf-CHY PF05495.12 75 pGCA_000736415_00034 - 166 0.35 11.4 10.0 2 2 0.00013 0.22 12.0 1.4 22 74 25 73 23 74 0.86 CHY zinc finger Ac81 PF05820.11 181 pGCA_000736415_00034 - 166 0.92 9.0 4.8 1 2 0.002 3.3 7.2 2.3 90 119 14 47 3 59 0.71 Baculoviridae AC81 Ac81 PF05820.11 181 pGCA_000736415_00034 - 166 0.92 9.0 4.8 2 2 0.069 1.1e+02 2.2 0.0 91 113 66 88 60 91 0.82 Baculoviridae AC81 zf-C3HC4_3 PF13920.6 50 pGCA_000736415_00034 - 166 1.2 9.0 10.5 1 2 0.0057 9.4 6.2 5.7 4 33 1 32 1 38 0.74 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_3 PF13920.6 50 pGCA_000736415_00034 - 166 1.2 9.0 10.5 2 2 0.012 20 5.1 0.1 24 35 66 77 45 82 0.66 Zinc finger, C3HC4 type (RING finger) zf-RING_4 PF14570.6 48 pGCA_000736415_00034 - 166 1.5 8.7 13.2 1 2 0.0013 2.1 8.2 6.1 9 35 8 35 1 40 0.73 RING/Ubox like zinc-binding domain zf-RING_4 PF14570.6 48 pGCA_000736415_00034 - 166 1.5 8.7 13.2 2 2 0.018 29 4.6 0.6 24 35 67 78 43 84 0.86 RING/Ubox like zinc-binding domain Tnp_zf-ribbon_2 PF13842.6 31 pGCA_000736415_00034 - 166 8.2 7.3 10.6 1 2 0.0017 2.7 8.8 5.2 6 31 2 28 1 28 0.77 DDE_Tnp_1-like zinc-ribbon Tnp_zf-ribbon_2 PF13842.6 31 pGCA_000736415_00034 - 166 8.2 7.3 10.6 2 2 0.52 8.5e+02 0.9 0.2 17 22 66 71 57 78 0.67 DDE_Tnp_1-like zinc-ribbon zf-ACC PF17848.1 26 pGCA_000736415_00037 - 363 0.098 12.8 3.8 1 2 0.00089 8 6.6 0.5 19 26 85 92 83 92 0.86 Acetyl-coA carboxylase zinc finger domain zf-ACC PF17848.1 26 pGCA_000736415_00037 - 363 0.098 12.8 3.8 2 2 0.0016 15 5.8 0.2 4 11 107 114 104 115 0.78 Acetyl-coA carboxylase zinc finger domain DZR PF12773.7 49 pGCA_000736415_00037 - 363 6.7 6.8 10.9 1 1 0.0035 31 4.7 10.9 15 36 89 112 79 137 0.54 Double zinc ribbon Toprim_2 PF13155.6 90 pGCA_000736415_00039 - 381 1e-14 54.7 0.0 1 2 4.8 1.7e+04 -3.7 0.0 42 55 113 126 98 127 0.62 Toprim-like Toprim_2 PF13155.6 90 pGCA_000736415_00039 - 381 1e-14 54.7 0.0 2 2 7.6e-18 2.7e-14 53.3 0.0 1 90 285 370 285 370 0.94 Toprim-like Toprim_3 PF13362.6 95 pGCA_000736415_00039 - 381 1.6e-08 34.8 0.0 1 1 8.3e-12 3e-08 33.9 0.0 2 90 284 371 283 374 0.79 Toprim domain zf-CHC2 PF01807.20 98 pGCA_000736415_00039 - 381 4.3e-07 29.7 0.3 1 1 2.7e-10 9.7e-07 28.5 0.3 11 91 10 94 2 100 0.79 CHC2 zinc finger Toprim_4 PF13662.6 89 pGCA_000736415_00039 - 381 0.0096 16.4 0.0 1 1 6.6e-06 0.024 15.1 0.0 50 84 318 352 284 356 0.83 Toprim domain DUF3854 PF12965.7 130 pGCA_000736415_00039 - 381 0.023 14.7 0.2 1 1 8.2e-05 0.29 11.1 0.2 68 125 321 372 276 376 0.89 Domain of unknown function (DUF3854) N6_N4_Mtase PF01555.18 231 pGCA_000736415_00040 - 291 2.4e-05 24.2 0.4 1 2 0.00012 1.1 8.9 0.0 197 223 41 67 30 69 0.87 DNA methylase N6_N4_Mtase PF01555.18 231 pGCA_000736415_00040 - 291 2.4e-05 24.2 0.4 2 2 4.7e-06 0.042 13.5 0.2 3 116 86 228 84 287 0.64 DNA methylase DpnI_C PF17726.1 70 pGCA_000736415_00040 - 291 0.00013 22.0 0.3 1 1 4e-08 0.00036 20.6 0.3 5 53 231 279 228 281 0.78 Dam-replacing HTH domain zf-BED PF02892.15 44 pGCA_000736415_00041 - 113 0.042 13.9 0.0 1 1 5.4e-06 0.097 12.7 0.0 6 25 54 73 50 80 0.89 BED zinc finger DUF4258 PF14076.6 63 pGCA_000736415_00045 - 77 0.069 13.5 0.3 1 1 9e-05 0.81 10.1 0.3 2 60 9 65 9 67 0.65 Domain of unknown function (DUF4258) Methyltransf_23 PF13489.6 165 pGCA_000736415_00045 - 77 0.15 11.9 0.0 1 1 1.9e-05 0.17 11.7 0.0 9 45 26 60 11 69 0.82 Methyltransferase domain MPTase-PolyVal PF18818.1 126 pGCA_000736415_00046 - 341 8.2e-48 161.6 0.0 1 1 4.1e-51 1.2e-47 161.0 0.0 2 126 160 284 159 284 0.99 Metallopeptidase superfamily domain DUF1738 PF08401.11 128 pGCA_000736415_00046 - 341 1.1e-33 116.1 0.1 1 1 6.4e-37 1.9e-33 115.3 0.1 3 128 17 135 15 135 0.91 Domain of unknown function (DUF1738) EpmC PF04315.12 163 pGCA_000736415_00046 - 341 0.00047 19.9 0.0 1 1 2.9e-07 0.00087 19.0 0.0 5 53 163 214 159 229 0.83 Elongation factor P hydroxylase Tox-MPTase3 PF15639.6 137 pGCA_000736415_00046 - 341 0.0042 16.9 0.1 1 1 3.1e-06 0.0092 15.8 0.1 100 135 202 239 184 240 0.75 Metallopeptidase toxin 3 DUF4127 PF13552.6 490 pGCA_000736415_00046 - 341 0.021 13.5 0.1 1 1 9.5e-06 0.028 13.0 0.1 123 242 199 338 189 341 0.85 Protein of unknown function (DUF4127) GP88 PF17338.2 231 pGCA_000736415_00046 - 341 0.022 14.2 0.1 1 2 0.92 2.7e+03 -2.5 0.0 61 95 8 40 4 69 0.71 Gene product 88 GP88 PF17338.2 231 pGCA_000736415_00046 - 341 0.022 14.2 0.1 2 2 2e-05 0.059 12.8 0.0 103 159 262 319 234 330 0.86 Gene product 88 Fucose_iso_N2 PF07882.12 180 pGCA_000736415_00047 - 133 0.0057 16.2 0.8 1 2 0.2 1.2e+03 -1.1 0.0 144 163 16 35 10 44 0.76 L-fucose isomerase, second N-terminal domain Fucose_iso_N2 PF07882.12 180 pGCA_000736415_00047 - 133 0.0057 16.2 0.8 2 2 1.7e-06 0.01 15.5 0.3 26 97 47 121 34 129 0.82 L-fucose isomerase, second N-terminal domain RNA_pol_Rpb8 PF03870.15 139 pGCA_000736415_00047 - 133 0.056 13.6 0.1 1 1 1.3e-05 0.076 13.2 0.1 31 71 58 98 46 119 0.75 RNA polymerase Rpb8 s48_45 PF07422.13 108 pGCA_000736415_00047 - 133 0.082 13.5 0.8 1 2 0.2 1.2e+03 0.1 0.0 33 44 2 13 1 21 0.77 Sexual stage antigen s48/45 domain s48_45 PF07422.13 108 pGCA_000736415_00047 - 133 0.082 13.5 0.8 2 2 4.7e-05 0.28 11.8 0.1 25 87 46 118 22 130 0.72 Sexual stage antigen s48/45 domain RecT PF03837.14 199 pGCA_000736415_00048 - 281 1.2e-36 126.1 0.3 1 2 2.5e-40 4.5e-36 124.2 0.0 11 192 31 202 23 210 0.91 RecT family RecT PF03837.14 199 pGCA_000736415_00048 - 281 1.2e-36 126.1 0.3 2 2 0.037 6.6e+02 -0.4 0.1 109 156 232 278 207 280 0.58 RecT family Cas_Cas4 PF01930.17 162 pGCA_000736415_00051 - 359 1.6e-06 28.3 0.2 1 3 5.1 1e+04 -3.6 0.7 109 141 20 52 16 61 0.50 Domain of unknown function DUF83 Cas_Cas4 PF01930.17 162 pGCA_000736415_00051 - 359 1.6e-06 28.3 0.2 2 3 7.9e-10 1.6e-06 28.3 0.2 47 160 131 250 79 251 0.77 Domain of unknown function DUF83 Cas_Cas4 PF01930.17 162 pGCA_000736415_00051 - 359 1.6e-06 28.3 0.2 3 3 1.5 3e+03 -1.8 0.1 120 145 279 304 256 312 0.62 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 255 pGCA_000736415_00051 - 359 8.1e-05 22.7 1.2 1 2 6.6e-08 0.00013 22.0 0.2 101 255 111 251 14 251 0.69 PD-(D/E)XK nuclease superfamily PDDEXK_1 PF12705.7 255 pGCA_000736415_00051 - 359 8.1e-05 22.7 1.2 2 2 0.76 1.5e+03 -1.2 0.1 85 114 284 312 258 331 0.45 PD-(D/E)XK nuclease superfamily Nsp1_C PF05064.13 116 pGCA_000736415_00051 - 359 0.0026 17.5 0.5 1 2 2.6 5.1e+03 -2.7 0.1 11 26 35 50 24 58 0.54 Nsp1-like C-terminal region Nsp1_C PF05064.13 116 pGCA_000736415_00051 - 359 0.0026 17.5 0.5 2 2 1.3e-06 0.0026 17.5 0.5 62 112 253 303 250 308 0.91 Nsp1-like C-terminal region GrpE PF01025.19 166 pGCA_000736415_00051 - 359 0.011 15.4 1.7 1 2 0.26 5.1e+02 0.2 0.7 32 70 15 53 11 63 0.75 GrpE GrpE PF01025.19 166 pGCA_000736415_00051 - 359 0.011 15.4 1.7 2 2 5.7e-06 0.011 15.4 1.7 12 65 262 315 254 324 0.90 GrpE CENP-F_leu_zip PF10473.9 140 pGCA_000736415_00051 - 359 0.035 14.1 9.6 1 2 0.037 73 3.4 0.5 34 59 16 41 12 53 0.74 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CENP-F_leu_zip PF10473.9 140 pGCA_000736415_00051 - 359 0.035 14.1 9.6 2 2 2.2e-05 0.043 13.8 3.0 38 99 234 295 220 302 0.89 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4407 PF14362.6 298 pGCA_000736415_00051 - 359 0.058 12.7 1.6 1 1 5.3e-05 0.1 11.9 1.6 102 168 202 297 200 320 0.85 Domain of unknown function (DUF4407) CdvA PF18822.1 123 pGCA_000736415_00051 - 359 0.2 11.5 8.1 1 2 0.006 12 5.7 0.9 79 104 17 42 14 59 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pGCA_000736415_00051 - 359 0.2 11.5 8.1 2 2 0.00062 1.2 8.9 1.2 26 60 266 300 264 323 0.84 CdvA-like coiled-coil domain DUF615 PF04751.14 154 pGCA_000736415_00051 - 359 1.7 8.6 7.9 1 3 3.3 6.6e+03 -3.0 0.1 43 63 29 48 17 72 0.53 Protein of unknown function (DUF615) DUF615 PF04751.14 154 pGCA_000736415_00051 - 359 1.7 8.6 7.9 2 3 0.53 1.1e+03 -0.5 0.1 53 74 214 235 171 243 0.64 Protein of unknown function (DUF615) DUF615 PF04751.14 154 pGCA_000736415_00051 - 359 1.7 8.6 7.9 3 3 8.7e-05 0.17 11.8 1.5 14 64 263 316 261 353 0.80 Protein of unknown function (DUF615) CHASE3 PF05227.13 138 pGCA_000736415_00051 - 359 6.7 6.6 8.3 1 3 0.087 1.7e+02 2.0 0.0 40 120 14 91 11 109 0.64 CHASE3 domain CHASE3 PF05227.13 138 pGCA_000736415_00051 - 359 6.7 6.6 8.3 2 3 2.4 4.8e+03 -2.6 0.3 81 100 215 234 207 239 0.48 CHASE3 domain CHASE3 PF05227.13 138 pGCA_000736415_00051 - 359 6.7 6.6 8.3 3 3 0.00075 1.5 8.7 0.7 45 95 254 304 252 320 0.82 CHASE3 domain SSB PF00436.25 104 pGCA_000736415_00053 - 175 1.8e-29 101.9 0.2 1 1 3.6e-33 3.2e-29 101.0 0.2 2 104 3 105 2 105 0.99 Single-strand binding protein family Pex14_N PF04695.13 157 pGCA_000736415_00053 - 175 0.29 11.8 7.3 1 1 5.1e-05 0.46 11.1 7.3 63 126 96 161 74 169 0.50 Peroxisomal membrane anchor protein (Pex14p) conserved region Toxin-JAB1 PF15659.6 86 pGCA_000736415_00054 - 79 0.088 13.2 0.0 1 1 5.9e-06 0.11 12.9 0.0 32 83 14 66 4 69 0.79 JAB-like toxin 1 Dus PF01207.17 310 pGCA_000736415_00058 - 158 0.03 13.4 0.1 1 1 2.2e-06 0.04 13.0 0.1 93 155 53 115 33 116 0.92 Dihydrouridine synthase (Dus) SLT PF01464.20 117 pGCA_000736415_00059 - 142 4.6e-19 68.2 0.0 1 1 6.8e-23 6.1e-19 67.8 0.0 2 96 21 117 20 123 0.95 Transglycosylase SLT domain Lys PF00062.20 124 pGCA_000736415_00059 - 142 0.012 15.8 0.0 1 1 2.1e-06 0.019 15.2 0.0 30 61 38 69 24 83 0.88 C-type lysozyme/alpha-lactalbumin family DUF480 PF04337.12 149 pGCA_000736415_00060 - 103 0.0017 18.4 0.1 1 1 2.1e-07 0.0019 18.3 0.1 68 148 3 83 1 84 0.90 Protein of unknown function, DUF480 RdRP_1 PF00680.20 482 pGCA_000736415_00060 - 103 0.027 13.0 0.1 1 1 3.4e-06 0.03 12.8 0.1 48 121 11 85 2 98 0.84 RNA dependent RNA polymerase DUF3267 PF11667.8 108 pGCA_000736415_00061 - 186 0.042 14.1 8.6 1 2 0.46 4.1e+03 -1.9 0.0 62 84 11 39 5 44 0.51 Putative zincin peptidase DUF3267 PF11667.8 108 pGCA_000736415_00061 - 186 0.042 14.1 8.6 2 2 6e-06 0.053 13.8 5.1 6 98 43 154 38 159 0.78 Putative zincin peptidase Peptidase_M50B PF13398.6 200 pGCA_000736415_00061 - 186 0.14 11.8 7.8 1 1 0.00027 2.4 7.7 7.7 16 52 31 69 9 184 0.65 Peptidase M50B-like GGDEF PF00990.21 161 pGCA_000736415_00062 - 800 5e-34 117.4 0.6 1 1 4.5e-37 1.1e-33 116.2 0.6 12 161 420 567 417 567 0.89 Diguanylate cyclase, GGDEF domain HD PF01966.22 122 pGCA_000736415_00062 - 800 2.7e-05 24.4 0.4 1 4 3.9 9.9e+03 -3.3 0.0 77 98 97 125 81 148 0.62 HD domain HD PF01966.22 122 pGCA_000736415_00062 - 800 2.7e-05 24.4 0.4 2 4 1.1e-08 2.7e-05 24.4 0.4 2 95 226 322 225 383 0.71 HD domain HD PF01966.22 122 pGCA_000736415_00062 - 800 2.7e-05 24.4 0.4 3 4 1.2 3.2e+03 -1.7 0.1 57 113 530 592 507 596 0.60 HD domain HD PF01966.22 122 pGCA_000736415_00062 - 800 2.7e-05 24.4 0.4 4 4 1.9 4.9e+03 -2.3 0.0 64 95 689 722 647 736 0.74 HD domain SporV_AA PF12164.8 89 pGCA_000736415_00062 - 800 0.039 14.3 4.1 1 3 2.2e-05 0.057 13.8 0.2 8 48 92 132 91 153 0.85 Stage V sporulation protein AA SporV_AA PF12164.8 89 pGCA_000736415_00062 - 800 0.039 14.3 4.1 2 3 1.1 2.8e+03 -1.3 0.1 16 45 391 420 383 430 0.84 Stage V sporulation protein AA SporV_AA PF12164.8 89 pGCA_000736415_00062 - 800 0.039 14.3 4.1 3 3 1 2.6e+03 -1.1 0.0 33 56 548 570 539 572 0.72 Stage V sporulation protein AA STAR_dimer PF16544.5 53 pGCA_000736415_00062 - 800 0.044 13.4 0.3 1 2 5.6e-05 0.14 11.7 0.1 16 37 150 172 146 173 0.78 Homodimerisation region of STAR domain protein STAR_dimer PF16544.5 53 pGCA_000736415_00062 - 800 0.044 13.4 0.3 2 2 4.5 1.2e+04 -4.0 0.0 12 26 408 422 407 423 0.81 Homodimerisation region of STAR domain protein Toxin-deaminase PF14424.6 142 pGCA_000736415_00062 - 800 0.045 13.9 0.6 1 3 1.7e-05 0.045 13.9 0.6 11 116 91 200 86 209 0.88 The BURPS668_1122 family of deaminases Toxin-deaminase PF14424.6 142 pGCA_000736415_00062 - 800 0.045 13.9 0.6 2 3 1.6 4e+03 -2.2 0.2 33 57 376 398 349 444 0.60 The BURPS668_1122 family of deaminases Toxin-deaminase PF14424.6 142 pGCA_000736415_00062 - 800 0.045 13.9 0.6 3 3 0.01 26 4.9 3.4 40 106 613 683 575 692 0.76 The BURPS668_1122 family of deaminases Stealth_CR4 PF17103.5 55 pGCA_000736415_00062 - 800 0.081 12.8 0.1 1 2 0.0024 6.1 6.8 0.0 3 31 355 387 353 388 0.73 Stealth protein CR4, conserved region 4 Stealth_CR4 PF17103.5 55 pGCA_000736415_00062 - 800 0.081 12.8 0.1 2 2 0.041 1e+02 2.9 0.0 9 34 451 477 448 479 0.79 Stealth protein CR4, conserved region 4 SurA_N_2 PF13623.6 145 pGCA_000736415_00062 - 800 4.1 7.3 12.7 1 4 0.043 1.1e+02 2.6 0.1 11 83 69 145 62 165 0.72 SurA N-terminal domain SurA_N_2 PF13623.6 145 pGCA_000736415_00062 - 800 4.1 7.3 12.7 2 4 0.0009 2.3 8.1 0.5 69 109 379 419 353 453 0.80 SurA N-terminal domain SurA_N_2 PF13623.6 145 pGCA_000736415_00062 - 800 4.1 7.3 12.7 3 4 0.022 56 3.6 0.0 50 70 500 520 472 532 0.84 SurA N-terminal domain SurA_N_2 PF13623.6 145 pGCA_000736415_00062 - 800 4.1 7.3 12.7 4 4 6 1.5e+04 -4.3 0.6 66 86 606 626 601 633 0.49 SurA N-terminal domain TrwB_AAD_bind PF10412.9 386 pGCA_000736415_00063 - 458 5.1e-16 58.6 0.0 1 2 2.1e-09 3.1e-06 26.3 0.0 15 55 49 89 40 210 0.88 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_000736415_00063 - 458 5.1e-16 58.6 0.0 2 2 1.1e-10 1.7e-07 30.5 0.0 213 324 278 388 213 402 0.84 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 469 pGCA_000736415_00063 - 458 2e-11 43.4 0.6 1 1 1.9e-14 2.8e-11 42.9 0.6 44 385 35 388 5 421 0.79 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_000736415_00063 - 458 4.3e-10 39.7 0.0 1 1 5.6e-13 8.3e-10 38.7 0.0 1 83 309 390 309 421 0.93 TraM recognition site of TraD and TraG DUF87 PF01935.17 227 pGCA_000736415_00063 - 458 0.0005 20.2 0.3 1 1 3e-06 0.0045 17.1 0.3 24 206 50 268 43 292 0.48 Helicase HerA, central domain Zeta_toxin PF06414.12 199 pGCA_000736415_00063 - 458 0.0014 17.9 0.0 1 1 2.4e-06 0.0035 16.6 0.0 9 51 43 85 35 87 0.82 Zeta toxin AAA_16 PF13191.6 170 pGCA_000736415_00063 - 458 0.0017 18.8 0.0 1 1 2.9e-06 0.0043 17.5 0.0 16 50 41 76 32 108 0.75 AAA ATPase domain ATPase_2 PF01637.18 233 pGCA_000736415_00063 - 458 0.0022 18.0 0.0 1 2 6.9e-06 0.01 15.8 0.0 15 58 44 87 35 132 0.83 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pGCA_000736415_00063 - 458 0.0022 18.0 0.0 2 2 2.3 3.5e+03 -2.3 0.0 93 93 283 283 187 332 0.59 ATPase domain predominantly from Archaea DUF853 PF05872.12 504 pGCA_000736415_00063 - 458 0.0045 15.6 0.0 1 1 5.5e-06 0.0082 14.8 0.0 18 71 44 99 29 119 0.77 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 362 pGCA_000736415_00063 - 458 0.0054 15.7 0.1 1 3 8.3e-05 0.12 11.2 0.0 20 67 48 95 36 133 0.79 AAA-like domain AAA_10 PF12846.7 362 pGCA_000736415_00063 - 458 0.0054 15.7 0.1 2 3 2.6 3.9e+03 -3.6 0.0 130 167 197 239 188 254 0.40 AAA-like domain AAA_10 PF12846.7 362 pGCA_000736415_00063 - 458 0.0054 15.7 0.1 3 3 0.062 93 1.8 0.0 264 306 327 376 324 387 0.71 AAA-like domain AAA_22 PF13401.6 137 pGCA_000736415_00063 - 458 0.011 16.1 0.0 1 1 2.4e-05 0.036 14.3 0.0 5 29 49 73 45 108 0.80 AAA domain FtsK_SpoIIIE PF01580.18 243 pGCA_000736415_00063 - 458 0.095 12.0 0.0 1 1 0.00013 0.2 11.0 0.0 38 60 48 70 22 101 0.82 FtsK/SpoIIIE family AAA_19 PF13245.6 146 pGCA_000736415_00063 - 458 0.11 12.8 0.0 1 2 0.00022 0.34 11.3 0.0 10 33 49 72 42 87 0.85 AAA domain AAA_19 PF13245.6 146 pGCA_000736415_00063 - 458 0.11 12.8 0.0 2 2 8.5 1.3e+04 -3.6 0.0 96 111 302 317 271 328 0.68 AAA domain HD_5 PF13487.6 64 pGCA_000736415_00064 - 193 4.6e-06 26.8 0.0 1 1 4.6e-10 8.2e-06 26.0 0.0 1 50 78 125 78 127 0.95 HD domain CLP_protease PF00574.23 182 pGCA_000736415_00066 - 229 0.15 12.0 0.3 1 1 1.7e-05 0.3 10.9 0.3 121 166 61 107 55 118 0.82 Clp protease GA-like PF17573.2 50 pGCA_000736415_00067 - 74 0.035 14.0 0.4 1 2 2.2e-05 0.19 11.6 0.1 15 32 5 22 1 28 0.90 GA-like domain GA-like PF17573.2 50 pGCA_000736415_00067 - 74 0.035 14.0 0.4 2 2 0.066 5.9e+02 0.5 0.0 16 24 44 52 40 59 0.72 GA-like domain Orthopox_A49R PF06489.11 162 pGCA_000736415_00067 - 74 0.16 12.2 0.0 1 1 1.8e-05 0.16 12.2 0.0 69 104 31 66 5 72 0.86 Orthopoxvirus A49R protein HTH_3 PF01381.22 55 pGCA_000736415_00068 - 76 2.7e-14 52.9 0.0 1 1 2e-17 3.3e-14 52.7 0.0 1 55 14 68 14 68 0.99 Helix-turn-helix HTH_19 PF12844.7 65 pGCA_000736415_00068 - 76 7.9e-13 48.2 0.0 1 1 5.4e-16 8.8e-13 48.1 0.0 1 64 11 73 11 74 0.95 Helix-turn-helix domain HTH_31 PF13560.6 64 pGCA_000736415_00068 - 76 8.3e-08 32.5 0.0 1 1 5.4e-11 8.8e-08 32.4 0.0 1 40 9 48 9 66 0.89 Helix-turn-helix domain HTH_25 PF13413.6 62 pGCA_000736415_00068 - 76 0.0011 18.8 0.0 1 1 9.1e-07 0.0015 18.4 0.0 2 34 14 46 13 51 0.94 Helix-turn-helix domain Phage_CI_repr PF07022.13 65 pGCA_000736415_00068 - 76 0.0028 17.7 0.0 1 1 2.6e-06 0.0043 17.1 0.0 2 64 13 75 12 76 0.92 Bacteriophage CI repressor helix-turn-helix domain Pou PF00157.17 72 pGCA_000736415_00068 - 76 0.026 14.5 0.1 1 1 2.3e-05 0.037 14.0 0.1 3 34 4 35 2 44 0.86 Pou domain - N-terminal to homeobox domain HTH_37 PF13744.6 80 pGCA_000736415_00068 - 76 0.047 13.7 0.0 1 1 3.2e-05 0.052 13.5 0.0 21 54 12 45 2 57 0.86 Helix-turn-helix domain MqsA_antitoxin PF15731.5 131 pGCA_000736415_00068 - 76 0.055 13.6 0.0 1 1 3.9e-05 0.064 13.4 0.0 71 117 11 57 3 67 0.89 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_23 PF13384.6 50 pGCA_000736415_00068 - 76 0.064 13.1 0.0 1 2 8.8e-05 0.14 12.0 0.0 10 37 14 42 12 50 0.84 Homeodomain-like domain HTH_23 PF13384.6 50 pGCA_000736415_00068 - 76 0.064 13.1 0.0 2 2 2.7 4.5e+03 -2.3 0.0 25 33 59 67 56 68 0.77 Homeodomain-like domain WYL_3 PF18488.1 63 pGCA_000736415_00068 - 76 0.081 13.3 0.0 1 1 7.6e-05 0.12 12.7 0.0 8 41 14 49 10 51 0.79 WYL domain YdaS_antitoxin PF15943.5 65 pGCA_000736415_00068 - 76 0.1 12.4 0.0 1 1 8.3e-05 0.14 12.1 0.0 9 41 23 55 14 66 0.78 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT SNase PF00565.17 108 pGCA_000736415_00069 - 172 4.4e-17 62.5 0.1 1 1 3.1e-21 5.5e-17 62.2 0.1 2 107 43 161 42 162 0.91 Staphylococcal nuclease homologue AAA_25 PF13481.6 194 pGCA_000736415_00072 - 389 5.9e-17 61.9 0.0 1 1 1.1e-20 9.6e-17 61.2 0.0 20 193 154 319 144 320 0.83 AAA domain DnaB PF00772.21 103 pGCA_000736415_00072 - 389 1.3e-06 28.4 0.3 1 1 3.2e-10 2.9e-06 27.3 0.3 4 101 7 95 4 97 0.85 DnaB-like helicase N terminal domain Thioredoxin_2 PF13098.6 109 pGCA_000736415_00073 - 139 2.7e-05 24.6 0.2 1 1 3.7e-08 0.00022 21.6 0.2 1 109 33 126 33 126 0.75 Thioredoxin-like domain Thioredoxin_7 PF13899.6 83 pGCA_000736415_00073 - 139 3.2e-05 24.0 0.0 1 1 7.1e-09 4.3e-05 23.6 0.0 8 83 28 104 22 104 0.80 Thioredoxin-like Thioredox_DsbH PF03190.15 163 pGCA_000736415_00073 - 139 0.00012 22.1 0.1 1 1 5.1e-08 0.0003 20.8 0.1 28 79 28 79 23 111 0.90 Protein of unknown function, DUF255 VSG_B PF13206.6 356 pGCA_000736415_00074 - 61 0.018 14.3 0.9 1 1 3e-06 0.018 14.3 0.9 124 177 4 57 1 61 0.86 Trypanosomal VSG domain HSCB_C PF07743.13 76 pGCA_000736415_00074 - 61 0.019 15.5 2.0 1 1 3.4e-06 0.021 15.3 2.0 10 57 1 50 1 58 0.83 HSCB C-terminal oligomerisation domain YtxH PF12732.7 75 pGCA_000736415_00074 - 61 0.034 14.7 0.1 1 1 7.6e-06 0.045 14.3 0.1 30 71 3 44 1 46 0.89 YtxH-like protein TrbC_Ftype PF09673.10 112 pGCA_000736415_00075 - 313 9.3e-17 61.1 0.0 1 1 2.4e-20 2.2e-16 59.9 0.0 1 112 159 288 159 288 0.87 Type-F conjugative transfer system pilin assembly protein DUF3388 PF11868.8 190 pGCA_000736415_00075 - 313 0.035 13.4 0.2 1 2 0.051 4.6e+02 0.0 0.1 92 134 93 136 87 141 0.82 Protein of unknown function (DUF3388) DUF3388 PF11868.8 190 pGCA_000736415_00075 - 313 0.035 13.4 0.2 2 2 3e-05 0.27 10.5 0.0 79 132 155 209 152 213 0.82 Protein of unknown function (DUF3388) EAL PF00563.20 238 pGCA_000736415_00076 - 262 3.4e-28 98.8 0.0 1 1 2.5e-32 4.6e-28 98.4 0.0 3 238 32 253 30 253 0.84 EAL domain TraU PF06834.11 307 pGCA_000736415_00077 - 331 8.2e-100 334.0 0.4 1 1 5.2e-104 9.4e-100 333.8 0.4 2 306 34 330 33 331 0.95 TraU protein TraF PF13728.6 224 pGCA_000736415_00079 - 255 3e-30 105.7 10.7 1 1 5.8e-34 3.5e-30 105.5 10.7 1 222 29 241 29 243 0.88 F plasmid transfer operon protein KaiB PF07689.12 82 pGCA_000736415_00079 - 255 0.055 13.2 0.2 1 2 0.025 1.5e+02 2.2 0.1 6 43 86 123 82 127 0.87 KaiB domain KaiB PF07689.12 82 pGCA_000736415_00079 - 255 0.055 13.2 0.2 2 2 0.00025 1.5 8.6 0.0 26 53 183 210 164 211 0.79 KaiB domain ASC PF00858.24 443 pGCA_000736415_00079 - 255 0.72 8.7 5.6 1 1 0.00015 0.91 8.4 5.6 95 212 36 197 14 235 0.61 Amiloride-sensitive sodium channel TraG_N PF07916.11 467 pGCA_000736415_00080 - 1166 1.7e-51 175.6 17.8 1 3 1.9e-55 1.7e-51 175.6 17.8 2 466 23 474 22 475 0.85 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pGCA_000736415_00080 - 1166 1.7e-51 175.6 17.8 2 3 0.018 1.6e+02 0.9 6.0 215 337 504 625 495 628 0.60 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pGCA_000736415_00080 - 1166 1.7e-51 175.6 17.8 3 3 0.8 7.2e+03 -4.5 1.4 252 299 684 730 670 749 0.43 TraG-like protein, N-terminal region CdiI_2 PF18593.1 91 pGCA_000736415_00080 - 1166 0.18 12.5 0.8 1 2 0.0012 11 6.7 0.4 26 74 910 959 904 963 0.88 CdiI immunity protein CdiI_2 PF18593.1 91 pGCA_000736415_00080 - 1166 0.18 12.5 0.8 2 2 0.015 1.3e+02 3.3 0.0 10 45 962 999 956 1003 0.91 CdiI immunity protein YfhO PF09586.10 839 pGCA_000736415_00081 - 100 0.016 13.5 2.6 1 1 3.1e-06 0.018 13.3 2.6 185 264 18 94 10 97 0.84 Bacterial membrane protein YfhO DUF1189 PF06691.11 244 pGCA_000736415_00081 - 100 0.017 14.7 2.0 1 1 3.4e-06 0.02 14.5 2.0 20 62 12 57 2 99 0.69 Protein of unknown function (DUF1189) Herpes_LMP1 PF05297.11 386 pGCA_000736415_00081 - 100 0.068 12.4 3.2 1 1 1.4e-05 0.083 12.1 3.2 24 75 17 72 11 78 0.79 Herpesvirus latent membrane protein 1 (LMP1) RHH_3 PF12651.7 44 pGCA_000736415_00082 - 100 0.0013 18.6 1.3 1 2 0.9 8e+03 -3.1 0.0 9 17 22 30 19 32 0.59 Ribbon-helix-helix domain RHH_3 PF12651.7 44 pGCA_000736415_00082 - 100 0.0013 18.6 1.3 2 2 3.1e-07 0.0028 17.6 0.8 3 37 43 77 41 78 0.92 Ribbon-helix-helix domain DUF5123 PF17161.4 115 pGCA_000736415_00082 - 100 0.058 14.5 0.9 1 1 7.6e-06 0.068 14.2 0.9 22 79 12 70 3 89 0.74 Domain of unknown function (DUF5123) UvrB_inter PF17757.1 91 pGCA_000736415_00083 - 198 0.052 13.7 0.2 1 1 7.7e-06 0.14 12.4 0.2 2 73 6 75 5 90 0.84 UvrB interaction domain ALP_N PF17989.1 147 pGCA_000736415_00085 - 305 5.9e-15 55.7 0.1 1 1 1.9e-18 1.1e-14 54.8 0.1 1 147 11 144 11 144 0.78 Actin like proteins N terminal domain FtsA PF14450.6 103 pGCA_000736415_00085 - 305 0.00012 22.5 0.1 1 2 0.0031 19 5.8 0.0 1 17 10 26 10 41 0.87 Cell division protein FtsA FtsA PF14450.6 103 pGCA_000736415_00085 - 305 0.00012 22.5 0.1 2 2 5.2e-06 0.031 14.7 0.0 1 52 159 214 159 293 0.75 Cell division protein FtsA DUF2800 PF10926.8 363 pGCA_000736415_00085 - 305 0.12 11.6 0.1 1 2 0.27 1.6e+03 -2.0 0.0 287 322 101 135 86 144 0.79 Protein of unknown function (DUF2800) DUF2800 PF10926.8 363 pGCA_000736415_00085 - 305 0.12 11.6 0.1 2 2 6.1e-05 0.37 10.0 0.1 49 107 203 268 184 270 0.72 Protein of unknown function (DUF2800) DBR1 PF05011.13 139 pGCA_000736415_00086 - 97 0.0072 16.8 1.1 1 1 4.5e-07 0.0081 16.6 1.1 67 128 32 93 6 95 0.78 Lariat debranching enzyme, C-terminal domain DUF3400 PF11880.8 45 pGCA_000736415_00087 - 179 0.1 12.1 0.1 1 1 2.3e-05 0.2 11.2 0.1 11 37 100 125 93 128 0.86 Domain of unknown function (DUF3400) DUF2786 PF10979.8 40 pGCA_000736415_00087 - 179 0.18 11.8 1.3 1 1 4.1e-05 0.37 10.7 1.3 4 37 10 42 7 45 0.89 Protein of unknown function (DUF2786) Acetyltransf_9 PF13527.7 128 pGCA_000736415_00088 - 90 0.099 12.7 0.0 1 1 9.1e-06 0.16 12.0 0.0 78 112 4 38 1 73 0.90 Acetyltransferase (GNAT) domain Ring_hydroxyl_B PF00866.18 144 pGCA_000736415_00089 - 107 0.15 12.1 0.0 1 1 1.2e-05 0.22 11.6 0.0 75 110 10 47 5 54 0.84 Ring hydroxylating beta subunit SSXT PF05030.12 62 pGCA_000736415_00090 - 121 0.022 14.4 0.0 1 1 8.3e-06 0.037 13.6 0.0 4 26 27 49 24 77 0.89 SSXT protein (N-terminal region) NMT PF01233.19 160 pGCA_000736415_00090 - 121 0.092 12.6 0.6 1 1 2.5e-05 0.11 12.3 0.6 11 45 5 39 1 109 0.88 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain bZIP_2 PF07716.15 54 pGCA_000736415_00090 - 121 0.13 12.4 0.3 1 2 2.8e-05 0.13 12.4 0.3 23 52 21 50 19 52 0.92 Basic region leucine zipper bZIP_2 PF07716.15 54 pGCA_000736415_00090 - 121 0.13 12.4 0.3 2 2 2 9.1e+03 -3.2 0.2 31 33 67 69 60 76 0.47 Basic region leucine zipper BfiI_DBD PF18243.1 164 pGCA_000736415_00090 - 121 0.17 11.5 0.0 1 1 4.5e-05 0.2 11.2 0.0 28 54 48 74 23 88 0.78 Metal-independent restriction enzyme BfiI DNA binding domain AbiH PF14253.6 267 pGCA_000736415_00092 - 141 0.023 14.6 1.3 1 1 3.3e-06 0.03 14.2 1.3 105 182 25 123 2 140 0.57 Bacteriophage abortive infection AbiH PH_12 PF16457.5 134 pGCA_000736415_00092 - 141 0.1 13.1 0.2 1 2 9.3e-05 0.83 10.2 0.1 90 134 7 59 2 59 0.70 Pleckstrin homology domain PH_12 PF16457.5 134 pGCA_000736415_00092 - 141 0.1 13.1 0.2 2 2 0.072 6.4e+02 0.8 0.0 121 133 95 107 76 108 0.86 Pleckstrin homology domain ANT PF03374.14 108 pGCA_000736415_00093 - 70 0.041 14.2 0.0 1 1 7.5e-06 0.045 14.1 0.0 24 83 11 68 6 70 0.91 Phage antirepressor protein KilAC domain PhetRS_B1 PF18262.1 83 pGCA_000736415_00093 - 70 0.062 13.5 0.2 1 1 1.3e-05 0.076 13.2 0.2 4 48 20 64 18 70 0.85 Phe-tRNA synthetase beta subunit B1 domain HTH_28 PF13518.6 52 pGCA_000736415_00093 - 70 0.1 12.7 0.0 1 1 2.5e-05 0.15 12.2 0.0 11 33 9 31 5 33 0.87 Helix-turn-helix domain TMEM51 PF15345.6 238 pGCA_000736415_00094 - 55 0.11 12.3 0.0 1 1 6.4e-06 0.12 12.3 0.0 66 97 5 38 3 50 0.80 Transmembrane protein 51 AAA_19 PF13245.6 146 pGCA_000736415_00095 - 484 2.8e-13 50.4 0.0 1 1 4.2e-16 7.5e-13 49.0 0.0 1 146 7 233 7 233 0.86 AAA domain UvrD-helicase PF00580.21 315 pGCA_000736415_00095 - 484 4.2e-13 49.5 7.9 1 2 2.1e-11 3.8e-08 33.2 2.3 254 303 190 236 3 240 0.66 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 pGCA_000736415_00095 - 484 4.2e-13 49.5 7.9 2 2 0.49 8.8e+02 -0.8 0.3 172 199 375 402 287 479 0.64 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 349 pGCA_000736415_00095 - 484 3.2e-12 46.5 2.8 1 2 0.45 8.1e+02 -0.9 0.0 264 294 45 76 31 77 0.80 UvrD-like helicase C-terminal domain UvrD_C PF13361.6 349 pGCA_000736415_00095 - 484 3.2e-12 46.5 2.8 2 2 6.5e-15 1.2e-11 44.7 1.9 236 344 347 463 292 465 0.75 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 52 pGCA_000736415_00095 - 484 5.1e-09 35.8 0.0 1 2 1.1 2e+03 -1.3 0.0 14 28 14 28 13 48 0.80 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 52 pGCA_000736415_00095 - 484 5.1e-09 35.8 0.0 2 2 1.6e-11 2.9e-08 33.4 0.0 5 51 408 463 405 463 0.84 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 234 pGCA_000736415_00095 - 484 1.1e-08 35.1 0.7 1 4 0.0092 17 5.1 0.0 2 23 20 44 19 82 0.70 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 pGCA_000736415_00095 - 484 1.1e-08 35.1 0.7 2 4 3.4 6.1e+03 -3.3 0.0 121 145 108 131 101 154 0.67 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 pGCA_000736415_00095 - 484 1.1e-08 35.1 0.7 3 4 3.1e-06 0.0055 16.5 0.0 45 141 176 265 156 313 0.76 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 pGCA_000736415_00095 - 484 1.1e-08 35.1 0.7 4 4 0.00026 0.47 10.2 0.0 183 231 395 462 309 464 0.74 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 192 pGCA_000736415_00095 - 484 0.00014 21.6 0.1 1 3 1.3e-06 0.0023 17.7 0.0 2 68 3 64 2 97 0.74 AAA domain AAA_30 PF13604.6 192 pGCA_000736415_00095 - 484 0.00014 21.6 0.1 2 3 0.55 9.9e+02 -0.7 0.0 90 127 194 227 166 260 0.73 AAA domain AAA_30 PF13604.6 192 pGCA_000736415_00095 - 484 0.00014 21.6 0.1 3 3 0.42 7.6e+02 -0.3 0.0 148 175 371 398 359 410 0.83 AAA domain PhoH PF02562.16 205 pGCA_000736415_00095 - 484 0.00093 18.7 0.0 1 2 0.0086 16 4.9 0.0 6 34 4 31 1 54 0.81 PhoH-like protein PhoH PF02562.16 205 pGCA_000736415_00095 - 484 0.00093 18.7 0.0 2 2 0.0001 0.18 11.2 0.0 122 181 195 248 190 267 0.74 PhoH-like protein ResIII PF04851.15 171 pGCA_000736415_00095 - 484 0.011 15.7 5.8 1 2 1.5e-05 0.027 14.5 1.5 25 141 17 201 1 236 0.68 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_000736415_00095 - 484 0.011 15.7 5.8 2 2 0.18 3.3e+02 1.2 0.2 97 140 363 409 323 431 0.59 Type III restriction enzyme, res subunit AAA_11 PF13086.6 261 pGCA_000736415_00095 - 484 0.017 15.0 0.3 1 3 0.0034 6.1 6.6 0.0 18 56 17 63 3 68 0.65 AAA domain AAA_11 PF13086.6 261 pGCA_000736415_00095 - 484 0.017 15.0 0.3 2 3 0.018 31 4.2 0.0 210 253 185 227 179 227 0.84 AAA domain AAA_11 PF13086.6 261 pGCA_000736415_00095 - 484 0.017 15.0 0.3 3 3 0.3 5.4e+02 0.2 0.1 124 182 380 435 331 452 0.55 AAA domain OMPdecase PF00215.24 225 pGCA_000736415_00095 - 484 0.11 12.1 0.1 1 2 0.063 1.1e+02 2.2 0.0 88 133 17 63 4 97 0.81 Orotidine 5'-phosphate decarboxylase / HUMPS family OMPdecase PF00215.24 225 pGCA_000736415_00095 - 484 0.11 12.1 0.1 2 2 0.0015 2.7 7.5 0.0 64 144 351 478 350 481 0.89 Orotidine 5'-phosphate decarboxylase / HUMPS family RNase_T PF00929.24 165 pGCA_000736415_00097 - 100 0.036 14.6 0.1 1 1 2.3e-06 0.04 14.4 0.1 58 116 12 69 2 89 0.79 Exonuclease DUF1722 PF08349.11 117 pGCA_000736415_00098 - 67 0.11 12.8 0.0 1 1 7e-06 0.13 12.6 0.0 36 96 4 64 2 66 0.90 Protein of unknown function (DUF1722) DUF460 PF04312.13 141 pGCA_000736415_00100 - 144 0.1 12.3 0.0 1 1 7.4e-06 0.13 11.9 0.0 46 97 6 61 3 86 0.77 Protein of unknown function (DUF460) DUF5643 PF18705.1 115 pGCA_000736415_00103 - 84 0.13 12.3 0.0 1 1 8.9e-06 0.16 12.0 0.0 47 80 30 56 9 64 0.66 Family of unknown function (DUF5643) MrpF_PhaF PF04066.13 53 pGCA_000736415_00106 - 93 0.01 16.2 1.3 1 2 2.2e-06 0.01 16.2 1.3 33 49 4 20 1 22 0.94 Multiple resistance and pH regulation protein F (MrpF / PhaF) MrpF_PhaF PF04066.13 53 pGCA_000736415_00106 - 93 0.01 16.2 1.3 2 2 1 4.6e+03 -1.9 2.4 45 45 56 56 38 78 0.61 Multiple resistance and pH regulation protein F (MrpF / PhaF) UPF0242 PF06785.11 193 pGCA_000736415_00106 - 93 0.026 14.6 1.1 1 1 6.2e-06 0.028 14.5 1.1 25 62 24 79 3 91 0.82 Uncharacterised protein family (UPF0242) N-terminus UPF0016 PF01169.19 75 pGCA_000736415_00106 - 93 0.039 14.3 7.1 1 2 2e-05 0.089 13.1 0.8 35 75 5 56 3 56 0.92 Uncharacterized protein family UPF0016 UPF0016 PF01169.19 75 pGCA_000736415_00106 - 93 0.039 14.3 7.1 2 2 0.01 47 4.4 1.5 29 51 57 79 56 92 0.79 Uncharacterized protein family UPF0016 TrbC PF04956.13 99 pGCA_000736415_00106 - 93 1.2 9.4 11.4 1 1 0.00029 1.3 9.3 11.4 15 99 5 88 1 88 0.85 TrbC/VIRB2 family TraL PF07178.11 90 pGCA_000736415_00107 - 100 2.4e-12 47.2 1.0 1 1 3.1e-16 2.7e-12 47.0 1.0 2 90 9 98 8 98 0.86 TraL protein ThrE PF06738.12 241 pGCA_000736415_00107 - 100 0.024 14.0 0.3 1 1 2.9e-06 0.026 13.9 0.3 99 163 14 78 4 83 0.87 Putative threonine/serine exporter TraE PF05309.11 182 pGCA_000736415_00108 - 187 2e-34 118.5 1.7 1 1 2.8e-38 2.5e-34 118.3 1.7 2 180 2 180 1 181 0.96 TraE protein MadM PF03818.13 59 pGCA_000736415_00108 - 187 0.047 13.6 0.2 1 1 1.4e-05 0.12 12.2 0.2 13 38 22 47 17 49 0.93 Malonate/sodium symporter MadM subunit TraK PF06586.11 231 pGCA_000736415_00109 - 257 9.5e-24 84.4 3.7 1 1 4e-27 3.6e-23 82.5 3.7 6 206 5 218 3 233 0.88 TraK protein NusG_II PF07009.11 107 pGCA_000736415_00109 - 257 0.32 11.2 4.5 1 2 1.5e-05 0.13 12.4 0.6 4 73 7 85 4 95 0.67 NusG domain II NusG_II PF07009.11 107 pGCA_000736415_00109 - 257 0.32 11.2 4.5 2 2 0.13 1.2e+03 -0.3 0.1 27 64 188 206 148 238 0.61 NusG domain II TrbI PF03743.14 187 pGCA_000736415_00110 - 427 3.5e-33 115.0 1.1 1 1 2.2e-36 4.8e-33 114.6 1.1 2 186 207 408 206 409 0.94 Bacterial conjugation TrbI-like protein Bap31_Bap29_C PF18035.1 50 pGCA_000736415_00110 - 427 0.0036 17.3 1.3 1 1 4.8e-06 0.011 15.7 1.3 16 42 78 111 62 120 0.79 Bap31/Bap29 cytoplasmic coiled-coil domain HALZ PF02183.18 43 pGCA_000736415_00110 - 427 0.0052 17.0 2.6 1 1 4.7e-06 0.01 16.0 2.6 19 41 84 106 83 107 0.91 Homeobox associated leucine zipper bZIP_1 PF00170.21 64 pGCA_000736415_00110 - 427 0.0093 16.1 2.9 1 1 1.2e-05 0.027 14.6 2.9 33 62 84 113 80 115 0.93 bZIP transcription factor UPF0242 PF06785.11 193 pGCA_000736415_00110 - 427 0.046 13.8 1.5 1 1 3.7e-05 0.083 13.0 1.5 36 134 29 131 17 134 0.65 Uncharacterised protein family (UPF0242) N-terminus DivIC PF04977.15 80 pGCA_000736415_00110 - 427 0.094 12.5 3.1 1 1 0.0001 0.23 11.2 3.1 18 54 78 114 74 120 0.80 Septum formation initiator FAD-SLDH PF12318.8 161 pGCA_000736415_00110 - 427 0.13 12.3 0.8 1 2 0.00012 0.26 11.3 0.2 48 102 72 126 27 132 0.82 Membrane bound FAD containing D-sorbitol dehydrogenase FAD-SLDH PF12318.8 161 pGCA_000736415_00110 - 427 0.13 12.3 0.8 2 2 2.1 4.8e+03 -2.5 0.0 106 125 317 337 309 354 0.73 Membrane bound FAD containing D-sorbitol dehydrogenase YabA PF06156.13 102 pGCA_000736415_00110 - 427 0.19 12.4 1.5 1 1 0.00021 0.48 11.1 1.5 20 66 75 121 62 133 0.70 Initiation control protein YabA Thioredoxin_2 PF13098.6 109 pGCA_000736415_00111 - 271 3.3e-16 59.7 0.1 1 1 3.7e-19 6.6e-16 58.7 0.1 3 100 135 254 133 263 0.92 Thioredoxin-like domain DsbC_N PF10411.9 54 pGCA_000736415_00111 - 271 1.3e-07 30.9 0.1 1 1 1.7e-10 3e-07 29.8 0.1 4 51 45 93 42 96 0.93 Disulfide bond isomerase protein N-terminus Thioredoxin_4 PF13462.6 166 pGCA_000736415_00111 - 271 1.3e-06 28.7 2.0 1 2 2.1e-06 0.0038 17.4 0.3 7 68 131 188 125 190 0.71 Thioredoxin Thioredoxin_4 PF13462.6 166 pGCA_000736415_00111 - 271 1.3e-06 28.7 2.0 2 2 0.00047 0.85 9.8 0.1 93 149 180 241 175 258 0.64 Thioredoxin DSBA PF01323.20 193 pGCA_000736415_00111 - 271 1.3e-06 28.3 0.3 1 2 5.7e-06 0.01 15.6 0.1 3 79 142 213 140 215 0.86 DSBA-like thioredoxin domain DSBA PF01323.20 193 pGCA_000736415_00111 - 271 1.3e-06 28.3 0.3 2 2 4.4e-05 0.079 12.7 0.0 146 181 211 248 208 263 0.77 DSBA-like thioredoxin domain Glutaredoxin PF00462.24 60 pGCA_000736415_00111 - 271 0.0039 17.4 0.3 1 2 2.1e-05 0.038 14.2 0.1 2 22 142 162 141 173 0.84 Glutaredoxin Glutaredoxin PF00462.24 60 pGCA_000736415_00111 - 271 0.0039 17.4 0.3 2 2 0.41 7.4e+02 0.5 0.0 36 55 213 238 189 242 0.64 Glutaredoxin ATPgrasp_YheCD PF14398.6 256 pGCA_000736415_00111 - 271 0.0088 15.3 0.1 1 1 7.5e-06 0.014 14.7 0.1 159 229 177 246 174 263 0.86 YheC/D like ATP-grasp TraF PF13728.6 224 pGCA_000736415_00111 - 271 0.013 15.3 0.1 1 2 0.0035 6.2 6.6 0.0 128 150 136 158 120 165 0.87 F plasmid transfer operon protein TraF PF13728.6 224 pGCA_000736415_00111 - 271 0.013 15.3 0.1 2 2 0.0041 7.4 6.3 0.0 185 211 225 251 206 254 0.80 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 76 pGCA_000736415_00111 - 271 0.021 14.9 1.1 1 3 0.0066 12 6.0 0.0 5 22 143 161 139 166 0.80 Thioredoxin domain Thioredoxin_3 PF13192.6 76 pGCA_000736415_00111 - 271 0.021 14.9 1.1 2 3 0.29 5.2e+02 0.8 0.0 33 53 192 214 177 227 0.69 Thioredoxin domain Thioredoxin_3 PF13192.6 76 pGCA_000736415_00111 - 271 0.021 14.9 1.1 3 3 0.0055 9.8 6.3 0.4 17 72 196 256 190 260 0.68 Thioredoxin domain Thioredoxin_8 PF13905.6 95 pGCA_000736415_00111 - 271 0.04 14.2 0.4 1 1 0.0001 0.18 12.1 0.4 2 94 138 244 137 246 0.68 Thioredoxin-like Thioredoxin_5 PF13743.6 186 pGCA_000736415_00111 - 271 0.071 12.8 0.4 1 2 0.0038 6.9 6.3 0.4 2 24 143 165 142 201 0.80 Thioredoxin Thioredoxin_5 PF13743.6 186 pGCA_000736415_00111 - 271 0.071 12.8 0.4 2 2 0.015 27 4.4 0.0 137 170 212 245 175 259 0.70 Thioredoxin TraV PF09676.10 132 pGCA_000736415_00112 - 240 0.0043 18.0 5.3 1 1 2.7e-06 0.0097 16.9 5.2 1 51 27 76 27 182 0.79 Type IV conjugative transfer system lipoprotein (TraV) SH3_4 PF06347.13 56 pGCA_000736415_00112 - 240 0.0063 16.3 0.0 1 1 3.9e-06 0.014 15.2 0.0 4 52 192 235 190 238 0.91 Bacterial SH3 domain SH3_3 PF08239.11 55 pGCA_000736415_00112 - 240 0.013 15.7 0.1 1 1 9e-06 0.032 14.5 0.1 2 45 192 231 191 235 0.91 Bacterial SH3 domain Transketolase_N PF00456.21 334 pGCA_000736415_00112 - 240 0.049 12.6 0.3 1 1 2.4e-05 0.085 11.8 0.3 213 292 91 170 65 213 0.80 Transketolase, thiamine diphosphate binding domain Herpes_glycop_D PF01537.17 124 pGCA_000736415_00112 - 240 0.052 13.7 0.0 1 1 2.5e-05 0.089 13.0 0.0 35 77 6 48 1 61 0.87 Herpesvirus glycoprotein D/GG/GX domain SH3_3 PF08239.11 55 pGCA_000736415_00113 - 191 5.6e-05 23.3 0.1 1 1 1.2e-07 0.00012 22.3 0.1 6 54 136 183 133 184 0.82 Bacterial SH3 domain ADIP PF11559.8 152 pGCA_000736415_00113 - 191 0.0013 18.8 3.7 1 1 2.3e-06 0.0023 18.0 3.7 64 123 32 91 22 98 0.86 Afadin- and alpha -actinin-Binding Sec34 PF04136.15 149 pGCA_000736415_00113 - 191 0.0038 17.1 1.5 1 1 5.4e-06 0.0054 16.6 1.5 4 64 36 96 33 126 0.89 Sec34-like family CLZ PF16526.5 71 pGCA_000736415_00113 - 191 0.0068 16.7 4.4 1 2 0.0018 1.8 9.0 0.0 34 61 31 58 24 60 0.91 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CLZ PF16526.5 71 pGCA_000736415_00113 - 191 0.0068 16.7 4.4 2 2 0.0048 4.8 7.6 2.2 30 57 62 89 59 92 0.75 C-terminal leucine zipper domain of cyclic nucleotide-gated channels SMC_ScpB PF04079.16 160 pGCA_000736415_00113 - 191 0.0085 15.7 1.4 1 1 1.3e-05 0.013 15.2 1.4 23 93 33 103 7 115 0.86 Segregation and condensation complex subunit ScpB V_ATPase_I PF01496.19 813 pGCA_000736415_00113 - 191 0.022 12.7 3.4 1 1 2.5e-05 0.025 12.5 3.4 44 147 31 137 20 180 0.53 V-type ATPase 116kDa subunit family HrpB7 PF09486.10 157 pGCA_000736415_00113 - 191 0.03 14.7 0.6 1 1 4.5e-05 0.045 14.1 0.6 65 142 16 91 5 98 0.89 Bacterial type III secretion protein (HrpB7) Cob_adeno_trans PF01923.18 164 pGCA_000736415_00113 - 191 0.041 14.0 1.6 1 1 6.8e-05 0.067 13.3 1.6 22 73 41 95 23 146 0.62 Cobalamin adenosyltransferase Spectrin PF00435.21 105 pGCA_000736415_00113 - 191 0.046 14.2 2.7 1 1 0.00011 0.11 13.0 2.7 6 68 29 90 25 97 0.86 Spectrin repeat M PF02370.16 21 pGCA_000736415_00113 - 191 0.072 13.7 6.6 1 1 0.00031 0.31 11.7 6.6 1 20 63 82 63 83 0.92 M protein repeat DUF1319 PF07028.11 109 pGCA_000736415_00113 - 191 0.11 12.7 3.3 1 1 0.00023 0.23 11.7 3.3 36 96 55 114 18 123 0.73 Protein of unknown function (DUF1319) TolA_bind_tri PF16331.5 76 pGCA_000736415_00113 - 191 0.16 12.0 2.2 1 2 0.00053 0.53 10.4 1.7 21 72 31 82 21 88 0.86 TolA binding protein trimerisation TolA_bind_tri PF16331.5 76 pGCA_000736415_00113 - 191 0.16 12.0 2.2 2 2 0.14 1.3e+02 2.7 0.4 21 38 73 90 65 97 0.64 TolA binding protein trimerisation DUF272 PF03312.15 124 pGCA_000736415_00113 - 191 0.2 11.9 3.6 1 2 0.0016 1.6 9.0 0.6 49 98 62 111 9 125 0.77 Protein of unknown function (DUF272) DUF272 PF03312.15 124 pGCA_000736415_00113 - 191 0.2 11.9 3.6 2 2 0.063 62 3.8 0.1 71 101 131 166 123 187 0.65 Protein of unknown function (DUF272) FlaC_arch PF05377.11 55 pGCA_000736415_00113 - 191 0.24 11.8 4.0 1 2 0.11 1.1e+02 3.3 0.1 24 45 31 52 21 63 0.84 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pGCA_000736415_00113 - 191 0.24 11.8 4.0 2 2 0.002 2 8.9 1.0 3 28 66 91 64 98 0.89 Flagella accessory protein C (FlaC) NPV_P10 PF05531.12 75 pGCA_000736415_00113 - 191 0.27 11.7 2.6 1 1 0.00055 0.55 10.7 1.7 12 50 57 95 53 101 0.74 Nucleopolyhedrovirus P10 protein GIT_CC PF16559.5 66 pGCA_000736415_00113 - 191 0.67 9.9 6.4 1 2 0.46 4.6e+02 0.8 0.1 42 56 33 47 21 58 0.84 GIT coiled-coil Rho guanine nucleotide exchange factor GIT_CC PF16559.5 66 pGCA_000736415_00113 - 191 0.67 9.9 6.4 2 2 0.00083 0.83 9.6 3.3 34 65 60 91 53 92 0.88 GIT coiled-coil Rho guanine nucleotide exchange factor YabA PF06156.13 102 pGCA_000736415_00113 - 191 1.6 9.4 7.4 1 1 0.0027 2.7 8.7 7.4 5 65 32 91 29 153 0.85 Initiation control protein YabA Swi5 PF07061.11 80 pGCA_000736415_00113 - 191 5.2 7.2 8.9 1 3 0.24 2.4e+02 1.9 0.1 8 38 33 63 30 64 0.84 Swi5 Swi5 PF07061.11 80 pGCA_000736415_00113 - 191 5.2 7.2 8.9 2 3 0.0013 1.3 9.1 3.1 2 37 62 97 61 98 0.90 Swi5 Swi5 PF07061.11 80 pGCA_000736415_00113 - 191 5.2 7.2 8.9 3 3 4.4 4.4e+03 -2.2 0.0 29 41 136 147 112 157 0.53 Swi5 TrbC PF04956.13 99 pGCA_001417635_00002 - 87 1.4e-15 57.3 6.9 1 1 1.8e-19 1.6e-15 57.1 6.9 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pGCA_001417635_00002 - 87 0.041 13.8 3.5 1 1 5.4e-06 0.049 13.5 3.3 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pGCA_001417635_00004 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pGCA_001417635_00004 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pGCA_001417635_00004 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase Resolvase PF00239.21 146 pGCA_001417635_00005 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pGCA_001417635_00005 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_001417635_00005 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_001417635_00005 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pGCA_001417635_00005 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_001417635_00005 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_001417635_00005 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pGCA_001417635_00005 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_001417635_00005 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_001417635_00005 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat AAA_25 PF13481.6 194 pGCA_001417635_00006 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pGCA_001417635_00006 - 597 0.00073 19.0 0.0 1 2 1.6e-06 0.0042 16.5 0.0 16 117 30 136 23 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_001417635_00006 - 597 0.00073 19.0 0.0 2 2 0.014 37 3.5 0.0 123 183 114 176 98 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_001417635_00006 - 597 0.0032 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_001417635_00006 - 597 0.0032 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pGCA_001417635_00006 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_001417635_00006 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pGCA_001417635_00006 - 597 0.028 13.8 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pGCA_001417635_00006 - 597 0.028 13.8 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pGCA_001417635_00006 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pGCA_001417635_00006 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pGCA_001417635_00006 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain HicB_lk_antitox PF15919.5 123 pGCA_001417635_00007 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 pGCA_001417635_00009 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pGCA_001417635_00009 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 pGCA_001417635_00009 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) UBA_6 PF18039.1 42 pGCA_001417635_00010 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 pGCA_001417635_00010 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pGCA_001417635_00010 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 pGCA_001417635_00010 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region DUF4223 PF13978.6 54 pGCA_001417635_00011 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pGCA_001417635_00011 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pGCA_001417635_00011 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 pGCA_001417635_00012 - 408 2.3e-08 34.3 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pGCA_001417635_00012 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 pGCA_001417635_00012 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pGCA_001417635_00012 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_001417635_00012 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF2400 PF09674.10 227 pGCA_001417635_00013 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pGCA_001417635_00013 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Sds3 PF08598.11 218 pGCA_001417635_00015 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pGCA_001417635_00015 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pGCA_001417635_00015 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pGCA_001417635_00015 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pGCA_001417635_00015 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 pGCA_001417635_00016 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_001417635_00016 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_001417635_00016 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pGCA_001417635_00016 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pGCA_001417635_00016 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_001417635_00016 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_001417635_00016 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pGCA_001417635_00016 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pGCA_001417635_00016 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pGCA_001417635_00016 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pGCA_001417635_00016 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Relaxase PF03432.14 242 pGCA_001417635_00017 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_001417635_00017 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain Acetyltransf_7 PF13508.7 76 pGCA_001417635_00018 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pGCA_001417635_00018 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family SNF2_N PF00176.23 350 pGCA_001417635_00019 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_001417635_00019 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_001417635_00019 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 pGCA_001417635_00019 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_001417635_00019 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_001417635_00019 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pGCA_001417635_00019 - 1932 9.8e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pGCA_001417635_00019 - 1932 9.8e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pGCA_001417635_00019 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pGCA_001417635_00019 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 pGCA_001417635_00019 - 1932 2.9e-05 24.5 0.6 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pGCA_001417635_00019 - 1932 2.9e-05 24.5 0.6 2 2 1.5 5.3e+03 -2.0 0.0 41 81 661 701 646 719 0.66 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 pGCA_001417635_00020 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 pGCA_001417635_00021 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pGCA_001417635_00021 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pGCA_001417635_00021 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_001417635_00021 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pGCA_001417635_00021 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pGCA_001417635_00021 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pGCA_001417635_00022 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pGCA_001417635_00022 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 pGCA_001417635_00023 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pGCA_001417635_00023 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pGCA_001417635_00023 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pGCA_001417635_00023 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pGCA_001417635_00023 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pGCA_001417635_00023 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 pGCA_001417635_00024 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pGCA_001417635_00024 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pGCA_001417635_00024 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pGCA_001417635_00024 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pGCA_001417635_00024 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pGCA_001417635_00024 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pGCA_001417635_00024 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pGCA_001417635_00024 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pGCA_001417635_00024 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 pGCA_001417635_00025 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pGCA_001417635_00025 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain Lip_prot_lig_C PF10437.9 85 pGCA_001417635_00026 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pGCA_001417635_00026 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pGCA_001417635_00026 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pGCA_001417635_00026 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain W2 PF02020.18 79 pGCA_001417635_00027 - 266 0.02 15.0 0.1 1 2 0.23 4.1e+03 -2.0 0.0 43 65 155 177 150 179 0.61 eIF4-gamma/eIF5/eIF2-epsilon W2 PF02020.18 79 pGCA_001417635_00027 - 266 0.02 15.0 0.1 2 2 3.4e-06 0.061 13.5 0.0 38 77 180 240 176 242 0.86 eIF4-gamma/eIF5/eIF2-epsilon APH PF01636.23 240 pGCA_001417635_00028 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pGCA_001417635_00028 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pGCA_001417635_00028 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pGCA_001417635_00028 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family GTP_EFTU PF00009.27 194 pGCA_001417635_00029 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pGCA_001417635_00029 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pGCA_001417635_00029 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pGCA_001417635_00029 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pGCA_001417635_00029 - 639 2.2e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pGCA_001417635_00029 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pGCA_001417635_00029 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pGCA_001417635_00029 - 639 0.0095 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pGCA_001417635_00029 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pGCA_001417635_00029 - 639 0.049 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 pGCA_001417635_00031 - 473 5.2e-05 23.2 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pGCA_001417635_00031 - 473 0.022 14.7 4.0 1 2 0.14 1.2e+03 -0.7 0.2 12 60 218 271 211 299 0.70 Intein splicing domain Intein_splicing PF14890.6 134 pGCA_001417635_00031 - 473 0.022 14.7 4.0 2 2 3.6e-06 0.032 14.2 1.5 37 125 311 444 264 453 0.74 Intein splicing domain Topoisom_bac PF01131.20 413 pGCA_001417635_00032 - 676 9.9e-97 324.5 8.2 1 1 4.5e-100 1.4e-96 324.1 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pGCA_001417635_00032 - 676 1.4e-12 47.7 0.4 1 2 3.1e-15 9.1e-12 45.1 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pGCA_001417635_00032 - 676 1.4e-12 47.7 0.4 2 2 1.2 3.7e+03 -1.8 0.1 38 55 537 555 487 569 0.63 Toprim domain zinc_ribbon_9 PF14369.6 35 pGCA_001417635_00032 - 676 0.05 13.9 0.7 1 2 2.9 8.5e+03 -2.9 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_001417635_00032 - 676 0.05 13.9 0.7 2 2 2.7e-05 0.079 13.2 0.0 18 35 624 641 614 641 0.76 zinc-ribbon zf-C4_Topoisom PF01396.19 39 pGCA_001417635_00032 - 676 0.057 13.2 2.4 1 1 5.4e-05 0.16 11.8 2.4 2 27 628 656 627 665 0.89 Topoisomerase DNA binding C4 zinc finger EF-hand_8 PF13833.6 55 pGCA_001417635_00032 - 676 0.077 12.9 0.0 1 1 9.3e-05 0.28 11.1 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 pGCA_001417635_00032 - 676 0.27 11.4 2.9 1 3 0.59 1.8e+03 -0.8 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_001417635_00032 - 676 0.27 11.4 2.9 2 3 1.6 4.9e+03 -2.2 0.1 46 63 472 489 470 493 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_001417635_00032 - 676 0.27 11.4 2.9 3 3 0.00026 0.78 10.0 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain Redoxin PF08534.10 147 pGCA_001417635_00033 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pGCA_001417635_00033 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 pGCA_001417635_00035 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pGCA_001417635_00035 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pGCA_001417635_00035 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pGCA_001417635_00035 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_001417635_00035 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_001417635_00035 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 pGCA_001417635_00036 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 pGCA_001417635_00037 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pGCA_001417635_00037 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pGCA_001417635_00037 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pGCA_001417635_00037 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pGCA_001417635_00037 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 pGCA_001417635_00038 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_001417635_00038 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pGCA_001417635_00038 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_001417635_00038 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pGCA_001417635_00038 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 pGCA_001417635_00039 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pGCA_001417635_00039 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_001417635_00039 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pGCA_001417635_00039 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pGCA_001417635_00039 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pGCA_001417635_00039 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pGCA_001417635_00039 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pGCA_001417635_00039 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pGCA_001417635_00039 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pGCA_001417635_00039 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pGCA_001417635_00039 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pGCA_001417635_00039 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pGCA_001417635_00039 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pGCA_001417635_00039 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pGCA_001417635_00039 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pGCA_001417635_00039 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pGCA_001417635_00039 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pGCA_001417635_00039 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pGCA_001417635_00039 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pGCA_001417635_00039 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pGCA_001417635_00039 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pGCA_001417635_00039 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pGCA_001417635_00039 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pGCA_001417635_00039 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pGCA_001417635_00039 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pGCA_001417635_00039 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pGCA_001417635_00039 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pGCA_001417635_00039 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pGCA_001417635_00039 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pGCA_001417635_00039 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pGCA_001417635_00039 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pGCA_001417635_00039 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 pGCA_001417635_00040 - 390 3.1e-48 164.1 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 193 374 193 374 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pGCA_001417635_00040 - 390 0.028 13.5 0.1 1 1 4.8e-06 0.043 12.9 0.1 31 81 321 371 304 376 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 pGCA_001417635_00041 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pGCA_001417635_00041 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pGCA_001417635_00041 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 pGCA_001417635_00042 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pGCA_001417635_00042 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 pGCA_001417635_00043 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pGCA_001417635_00043 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 pGCA_001417635_00044 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pGCA_001417635_00044 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pGCA_001417635_00044 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pGCA_001417635_00044 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pGCA_001417635_00044 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 pGCA_001417635_00045 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pGCA_001417635_00045 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pGCA_001417635_00045 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pGCA_001417635_00045 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pGCA_001417635_00045 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pGCA_001417635_00045 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pGCA_001417635_00045 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pGCA_001417635_00045 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pGCA_001417635_00045 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 pGCA_001417635_00045 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pGCA_001417635_00045 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pGCA_001417635_00045 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pGCA_001417635_00045 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 pGCA_001417635_00045 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pGCA_001417635_00045 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain IF2_N PF04760.15 54 pGCA_001417635_00046 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pGCA_001417635_00046 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pGCA_001417635_00046 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pGCA_001417635_00046 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pGCA_001417635_00046 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pGCA_001417635_00046 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pGCA_001417635_00046 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 pGCA_001417635_00047 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3251 PF11622.8 165 pGCA_001417635_00048 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pGCA_001417635_00048 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pGCA_001417635_00048 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pGCA_001417635_00048 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_001417635_00048 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_001417635_00048 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pGCA_001417635_00048 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pGCA_001417635_00048 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pGCA_001417635_00048 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pGCA_001417635_00048 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pGCA_001417635_00048 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pGCA_001417635_00048 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pGCA_001417635_00048 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pGCA_001417635_00048 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) Phage_pRha PF09669.10 88 pGCA_001417635_00049 - 185 6.3e-29 100.4 0.0 1 1 2.7e-32 9.7e-29 99.8 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pGCA_001417635_00049 - 185 0.0015 18.6 0.0 1 1 9.1e-07 0.0033 17.5 0.0 23 90 27 94 23 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pGCA_001417635_00049 - 185 0.045 13.3 0.1 1 2 0.066 2.4e+02 1.3 0.0 80 118 33 71 5 80 0.79 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pGCA_001417635_00049 - 185 0.045 13.3 0.1 2 2 0.00012 0.42 10.2 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pGCA_001417635_00049 - 185 0.086 12.9 0.0 1 1 5.8e-05 0.21 11.6 0.0 77 131 80 130 63 134 0.84 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pGCA_001417635_00049 - 185 0.73 9.9 5.7 1 3 0.054 1.9e+02 2.1 0.0 43 53 15 25 4 29 0.81 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pGCA_001417635_00049 - 185 0.73 9.9 5.7 2 3 0.0022 7.9 6.6 0.8 5 26 30 50 26 61 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pGCA_001417635_00049 - 185 0.73 9.9 5.7 3 3 0.064 2.3e+02 1.9 0.0 10 42 116 154 108 160 0.67 Sporulation protein Cse60 CagE_TrbE_VirB PF03135.14 206 pGCA_001417635_00050 - 491 2e-06 28.0 0.4 1 2 1.2e-09 5.3e-06 26.7 0.0 162 206 7 51 2 51 0.93 CagE, TrbE, VirB family, component of type IV transporter system CagE_TrbE_VirB PF03135.14 206 pGCA_001417635_00050 - 491 2e-06 28.0 0.4 2 2 2.2 9.9e+03 -3.6 0.1 104 135 370 382 348 395 0.48 CagE, TrbE, VirB family, component of type IV transporter system AAA_10 PF12846.7 362 pGCA_001417635_00050 - 491 7.4e-06 25.1 1.2 1 1 4.5e-09 2e-05 23.7 1.2 23 321 116 415 104 429 0.74 AAA-like domain HNOBA PF07701.14 221 pGCA_001417635_00050 - 491 0.017 14.6 0.1 1 1 6.1e-06 0.028 13.9 0.1 53 153 193 413 191 421 0.86 Heme NO binding associated cEGF PF12662.7 24 pGCA_001417635_00050 - 491 0.2 11.6 0.0 1 1 0.0001 0.47 10.4 0.0 14 24 328 339 324 339 0.82 Complement Clr-like EGF-like T6SS-SciN PF12790.7 120 pGCA_001563565_00001 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 428 pGCA_001563565_00002 - 465 4.7e-112 374.8 0.0 1 1 3.1e-116 5.5e-112 374.6 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 205 pGCA_001563565_00003 - 257 3.6e-35 121.5 0.0 1 1 2.3e-39 4.2e-35 121.4 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_HCP PF05638.12 129 pGCA_001563565_00004 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 259 pGCA_001563565_00005 - 1175 6.2e-41 140.5 0.0 1 1 4.1e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 pGCA_001563565_00005 - 1175 5.9e-40 137.1 0.5 1 1 4.1e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 pGCA_001563565_00005 - 1175 8.2e-27 94.5 2.1 1 1 4.9e-30 1.3e-26 93.9 2.1 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 pGCA_001563565_00005 - 1175 0.0003 20.7 0.0 1 2 8.9e-06 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 pGCA_001563565_00005 - 1175 0.0003 20.7 0.0 2 2 0.047 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 pGCA_001563565_00005 - 1175 0.0011 19.0 0.1 1 2 1.7e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 pGCA_001563565_00005 - 1175 0.0011 19.0 0.1 2 2 4.1 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 pGCA_001563565_00005 - 1175 0.0041 16.8 4.8 1 3 1.4e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 pGCA_001563565_00005 - 1175 0.0041 16.8 4.8 2 3 0.13 3.4e+02 0.8 0.0 41 77 451 487 432 583 0.80 O-Antigen ligase Wzy_C PF04932.15 155 pGCA_001563565_00005 - 1175 0.0041 16.8 4.8 3 3 0.076 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 pGCA_001563565_00005 - 1175 0.055 13.2 0.1 1 2 0.00017 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pGCA_001563565_00005 - 1175 0.055 13.2 0.1 2 2 0.76 1.9e+03 -1.3 0.0 22 37 841 856 831 870 0.75 P-loop containing region of AAA domain FHA PF00498.26 69 pGCA_001563565_00006 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 pGCA_001563565_00006 - 299 0.0007 19.9 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 pGCA_001563565_00006 - 299 0.0007 19.9 0.0 2 2 0.23 1.4e+03 -0.3 0.0 31 57 199 225 198 231 0.89 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 pGCA_001563565_00006 - 299 0.05 14.0 3.1 1 2 0.044 2.6e+02 2.1 0.1 18 58 107 147 105 150 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 pGCA_001563565_00006 - 299 0.05 14.0 3.1 2 2 7.4e-05 0.44 11.0 0.9 21 82 151 212 146 218 0.92 Ferredoxin-fold anticodon binding domain DUF2974 PF11187.8 224 pGCA_001563565_00010 - 500 3.9e-08 33.1 0.1 1 1 5.2e-11 1e-07 31.7 0.1 7 123 73 202 69 240 0.76 Protein of unknown function (DUF2974) Lipase_3 PF01764.25 142 pGCA_001563565_00010 - 500 6.3e-08 32.6 0.0 1 1 8.8e-11 1.8e-07 31.1 0.0 50 114 145 210 91 227 0.81 Lipase (class 3) DUF676 PF05057.14 219 pGCA_001563565_00010 - 500 3.1e-05 23.6 0.0 1 1 3.4e-08 6.8e-05 22.5 0.0 63 106 143 186 106 203 0.76 Putative serine esterase (DUF676) PGAP1 PF07819.13 231 pGCA_001563565_00010 - 500 4.2e-05 23.4 0.4 1 2 4.3e-07 0.00085 19.1 0.0 76 114 147 182 95 201 0.75 PGAP1-like protein PGAP1 PF07819.13 231 pGCA_001563565_00010 - 500 4.2e-05 23.4 0.4 2 2 0.08 1.6e+02 1.8 0.3 30 83 261 315 244 329 0.75 PGAP1-like protein LIDHydrolase PF10230.9 266 pGCA_001563565_00010 - 500 0.00084 19.0 0.0 1 1 8.7e-07 0.0017 17.9 0.0 66 101 141 175 100 186 0.72 Lipid-droplet associated hydrolase Abhydrolase_6 PF12697.7 220 pGCA_001563565_00010 - 500 0.0016 19.1 0.0 1 1 1.1e-06 0.0022 18.6 0.0 51 87 144 184 114 228 0.75 Alpha/beta hydrolase family UPF0227 PF05728.12 187 pGCA_001563565_00010 - 500 0.0033 17.4 0.1 1 2 1.5e-05 0.029 14.3 0.0 45 80 146 180 126 196 0.77 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pGCA_001563565_00010 - 500 0.0033 17.4 0.1 2 2 0.43 8.5e+02 -0.2 0.0 115 145 380 411 357 428 0.73 Uncharacterised protein family (UPF0227) DUF4450 PF14614.6 217 pGCA_001563565_00010 - 500 0.036 13.6 1.9 1 3 3 6e+03 -3.4 0.1 102 127 18 46 16 61 0.61 Domain of unknown function (DUF4450) DUF4450 PF14614.6 217 pGCA_001563565_00010 - 500 0.036 13.6 1.9 2 3 3.2 6.3e+03 -3.5 0.0 156 173 329 346 319 348 0.71 Domain of unknown function (DUF4450) DUF4450 PF14614.6 217 pGCA_001563565_00010 - 500 0.036 13.6 1.9 3 3 2.3e-05 0.045 13.3 0.1 6 48 435 477 432 484 0.94 Domain of unknown function (DUF4450) SBDS PF01172.18 88 pGCA_001563565_00010 - 500 0.11 12.6 1.6 1 1 0.00041 0.82 9.8 1.5 8 31 396 420 390 476 0.78 Shwachman-Bodian-Diamond syndrome (SBDS) protein Lipase_3 PF01764.25 142 pGCA_001563565_00012 - 245 1.5e-08 34.6 0.0 1 1 3.1e-11 5e-08 32.9 0.0 50 113 176 240 139 243 0.77 Lipase (class 3) DUF2974 PF11187.8 224 pGCA_001563565_00012 - 245 3.1e-08 33.4 0.0 1 1 3.1e-11 5e-08 32.8 0.0 7 123 100 233 95 236 0.71 Protein of unknown function (DUF2974) DUF676 PF05057.14 219 pGCA_001563565_00012 - 245 1.1e-05 25.0 0.1 1 1 1.4e-08 2.3e-05 24.0 0.1 63 117 174 227 168 235 0.71 Putative serine esterase (DUF676) PGAP1 PF07819.13 231 pGCA_001563565_00012 - 245 5.6e-05 23.0 0.1 1 1 5.9e-08 9.7e-05 22.2 0.1 46 114 128 213 98 235 0.75 PGAP1-like protein LIDHydrolase PF10230.9 266 pGCA_001563565_00012 - 245 0.00041 20.0 0.1 1 1 3.9e-07 0.00064 19.3 0.1 67 101 173 206 133 218 0.72 Lipid-droplet associated hydrolase Abhydrolase_6 PF12697.7 220 pGCA_001563565_00012 - 245 0.00064 20.4 0.0 1 1 5.3e-07 0.00086 20.0 0.0 51 86 175 211 138 241 0.75 Alpha/beta hydrolase family UPF0227 PF05728.12 187 pGCA_001563565_00012 - 245 0.0014 18.6 0.3 1 2 1.3 2.1e+03 -1.5 0.1 115 148 46 79 32 96 0.58 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pGCA_001563565_00012 - 245 0.0014 18.6 0.3 2 2 2.2e-06 0.0036 17.3 0.0 24 80 154 211 143 227 0.68 Uncharacterised protein family (UPF0227) Palm_thioest PF02089.15 242 pGCA_001563565_00012 - 245 0.014 15.3 1.8 1 2 0.44 7.2e+02 -0.2 0.5 152 206 29 91 18 115 0.65 Palmitoyl protein thioesterase Palm_thioest PF02089.15 242 pGCA_001563565_00012 - 245 0.014 15.3 1.8 2 2 1.6e-05 0.027 14.3 0.0 30 88 158 212 137 231 0.74 Palmitoyl protein thioesterase NMT PF01233.19 160 pGCA_001563565_00012 - 245 0.079 12.8 0.2 1 1 7e-05 0.11 12.3 0.2 28 123 90 188 62 195 0.79 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain Hydrolase_4 PF12146.8 239 pGCA_001563565_00012 - 245 0.17 11.2 0.0 1 1 0.00017 0.28 10.4 0.0 65 94 181 208 169 224 0.67 Serine aminopeptidase, S33 Ser_hydrolase PF06821.13 171 pGCA_001563565_00012 - 245 0.17 11.7 0.0 1 1 0.00017 0.28 11.0 0.0 6 71 141 206 138 219 0.80 Serine hydrolase DUF2070 PF09843.9 564 pGCA_001563565_00013 - 114 0.082 11.2 10.5 1 1 3.2e-05 0.094 11.0 10.5 80 172 9 105 3 113 0.74 Predicted membrane protein (DUF2070) DUF4199 PF13858.6 168 pGCA_001563565_00013 - 114 0.094 13.1 17.4 1 2 0.0018 5.3 7.4 8.4 6 59 11 62 7 66 0.60 Protein of unknown function (DUF4199) DUF4199 PF13858.6 168 pGCA_001563565_00013 - 114 0.094 13.1 17.4 2 2 0.00012 0.35 11.2 2.1 14 60 68 110 63 114 0.46 Protein of unknown function (DUF4199) Glucos_trans_II PF14264.6 297 pGCA_001563565_00013 - 114 0.2 11.0 22.9 1 2 0.0032 9.7 5.4 14.2 226 282 5 59 2 78 0.65 Glucosyl transferase GtrII Glucos_trans_II PF14264.6 297 pGCA_001563565_00013 - 114 0.2 11.0 22.9 2 2 0.0014 4.3 6.6 6.7 148 248 64 104 58 113 0.46 Glucosyl transferase GtrII ABC2_membrane_5 PF13346.6 206 pGCA_001563565_00013 - 114 0.31 10.5 21.7 1 2 0.035 1.1e+02 2.3 8.8 3 50 3 43 1 53 0.47 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 206 pGCA_001563565_00013 - 114 0.31 10.5 21.7 2 2 7.8e-06 0.023 14.2 5.5 2 65 53 113 51 114 0.71 ABC-2 family transporter protein DUF5385 PF17359.2 220 pGCA_001563565_00013 - 114 0.4 10.2 9.3 1 2 0.058 1.7e+02 1.6 0.6 5 30 35 61 32 67 0.59 Family of unknown function (DUF5385) DUF5385 PF17359.2 220 pGCA_001563565_00013 - 114 0.4 10.2 9.3 2 2 2.8e-05 0.085 12.4 2.6 2 31 81 112 80 114 0.50 Family of unknown function (DUF5385) DUF3784 PF12650.7 94 pGCA_001563565_00013 - 114 4.8 7.4 22.3 1 2 0.067 2e+02 2.3 7.2 48 90 10 56 3 60 0.64 Domain of unknown function (DUF3784) DUF3784 PF12650.7 94 pGCA_001563565_00013 - 114 4.8 7.4 22.3 2 2 7.4e-05 0.22 11.7 8.0 42 93 57 106 51 108 0.77 Domain of unknown function (DUF3784) RseC_MucC PF04246.12 130 pGCA_001563565_00014 - 93 9.1 6.3 6.3 1 2 0.085 1.5e+03 -1.0 0.1 78 96 5 22 3 31 0.58 Positive regulator of sigma(E), RseC/MucC RseC_MucC PF04246.12 130 pGCA_001563565_00014 - 93 9.1 6.3 6.3 2 2 0.00014 2.4 8.1 3.1 62 112 32 81 27 91 0.74 Positive regulator of sigma(E), RseC/MucC AAA_31 PF13614.6 177 pGCA_001563565_00016 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 pGCA_001563565_00016 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pGCA_001563565_00016 - 186 0.0018 18.3 0.5 1 1 2.7e-06 0.016 15.3 0.5 1 55 3 89 3 164 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_001563565_00016 - 186 0.014 14.9 0.0 1 1 3.1e-06 0.019 14.4 0.0 17 109 69 171 61 180 0.77 short chain dehydrogenase RHH_7 PF16777.5 74 pGCA_001563565_00017 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 pGCA_001563565_00017 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal OrfB_IS605 PF01385.19 120 pGCA_001563565_00018 - 90 1.8e-12 47.5 1.0 1 1 1.4e-16 2.5e-12 47.1 1.0 62 117 7 62 6 65 0.96 Probable transposase AAA_25 PF13481.6 194 pGCA_001563565_00019 - 599 2.9e-15 56.3 0.0 1 1 2.4e-18 6.2e-15 55.3 0.0 30 193 30 175 23 176 0.86 AAA domain DnaB_C PF03796.15 255 pGCA_001563565_00019 - 599 0.00024 20.5 0.0 1 2 3.9e-06 0.01 15.2 0.0 16 109 30 128 25 130 0.81 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_001563565_00019 - 599 0.00024 20.5 0.0 2 2 0.0039 10 5.4 0.0 121 183 112 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_001563565_00019 - 599 0.0012 18.6 0.0 1 2 9.7e-06 0.025 14.3 0.0 46 85 32 71 23 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_001563565_00019 - 599 0.0012 18.6 0.0 2 2 0.11 2.7e+02 1.2 0.0 96 119 108 131 98 171 0.69 IstB-like ATP binding protein AAA_24 PF13479.6 197 pGCA_001563565_00019 - 599 0.0029 17.4 0.0 1 1 2.3e-06 0.006 16.3 0.0 5 122 36 172 32 206 0.73 AAA domain ATPase PF06745.13 231 pGCA_001563565_00019 - 599 0.0041 16.5 0.1 1 2 1.2e-05 0.03 13.7 0.0 16 77 30 89 25 215 0.63 KaiC ATPase PF06745.13 231 pGCA_001563565_00019 - 599 0.0041 16.5 0.1 2 2 0.65 1.7e+03 -1.9 0.0 137 160 329 352 322 358 0.84 KaiC AAA PF00004.29 132 pGCA_001563565_00019 - 599 0.053 13.9 0.8 1 3 0.00026 0.67 10.4 0.0 2 106 37 167 36 174 0.61 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_001563565_00019 - 599 0.053 13.9 0.8 2 3 0.36 9.1e+02 0.2 0.0 57 74 417 436 383 456 0.76 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_001563565_00019 - 599 0.053 13.9 0.8 3 3 3.5 9e+03 -3.0 0.0 23 49 497 525 477 529 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pGCA_001563565_00019 - 599 0.16 12.1 0.8 1 1 0.00019 0.49 10.5 0.8 1 29 35 63 35 551 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain HicA_toxin PF07927.12 58 pGCA_001563565_00020 - 67 6.2e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pGCA_001563565_00021 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Peptidase_M4_C PF02868.15 168 pGCA_001563565_00022 - 100 0.051 13.4 0.1 1 1 3.8e-06 0.068 13.0 0.1 103 150 12 59 4 65 0.90 Thermolysin metallopeptidase, alpha-helical domain AAA_31 PF13614.6 177 pGCA_001563565_00025 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 pGCA_001563565_00025 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pGCA_001563565_00025 - 186 0.0018 18.3 0.5 1 1 2.7e-06 0.016 15.3 0.5 1 55 3 89 3 164 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_001563565_00025 - 186 0.014 14.9 0.0 1 1 3.1e-06 0.019 14.4 0.0 17 109 69 171 61 180 0.77 short chain dehydrogenase RHH_7 PF16777.5 74 pGCA_001563565_00026 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 pGCA_001563565_00026 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal NYN PF01936.18 147 pGCA_001563565_00028 - 180 1.1e-09 39.0 0.0 1 1 2e-13 1.2e-09 38.8 0.0 60 123 74 146 15 161 0.80 NYN domain Peroxin-22 PF12827.7 113 pGCA_001563565_00028 - 180 0.004 17.0 0.6 1 1 1.3e-06 0.0079 16.1 0.6 25 105 81 162 46 169 0.76 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 pGCA_001563565_00028 - 180 0.029 15.0 0.0 1 1 8.3e-06 0.049 14.2 0.0 61 103 100 142 77 142 0.87 PIN domain Toprim_3 PF13362.6 95 pGCA_001563565_00030 - 409 2.4e-08 34.2 0.1 1 2 1.4 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pGCA_001563565_00030 - 409 2.4e-08 34.2 0.1 2 2 1.4e-11 6.4e-08 32.9 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pGCA_001563565_00030 - 409 0.017 15.4 0.2 1 2 0.024 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pGCA_001563565_00030 - 409 0.017 15.4 0.2 2 2 0.00027 1.2 9.4 0.0 15 83 283 359 277 382 0.82 Retrotransposon gag protein DUF2315 PF10231.9 123 pGCA_001563565_00030 - 409 0.023 14.8 6.8 1 3 0.00028 1.3 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 pGCA_001563565_00030 - 409 0.023 14.8 6.8 2 3 0.0016 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 pGCA_001563565_00030 - 409 0.023 14.8 6.8 3 3 1.3 5.9e+03 -2.7 0.0 20 90 355 373 339 384 0.54 Apoptogenic protein 1 5_3_exonuc PF01367.20 97 pGCA_001563565_00030 - 409 0.25 12.0 1.7 1 2 0.62 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_001563565_00030 - 409 0.25 12.0 1.7 2 2 0.00012 0.53 10.9 0.2 15 81 322 384 321 401 0.72 5'-3' exonuclease, C-terminal SAM fold Put_DNA-bind_N PF06971.13 49 pGCA_001563565_00032 - 141 0.016 15.2 0.0 1 1 1.5e-06 0.027 14.5 0.0 11 34 4 27 3 30 0.95 Putative DNA-binding protein N-terminus BLOC1_2 PF10046.9 96 pGCA_001563565_00033 - 432 0.049 13.9 1.0 1 1 2.8e-05 0.25 11.7 1.0 44 95 263 314 260 315 0.94 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2459 PF09601.10 171 pGCA_001563565_00033 - 432 0.053 13.3 1.1 1 2 1.3e-05 0.12 12.2 0.1 87 163 131 199 119 201 0.72 Protein of unknown function (DUF2459) DUF2459 PF09601.10 171 pGCA_001563565_00033 - 432 0.053 13.3 1.1 2 2 0.32 2.8e+03 -2.1 0.1 143 143 289 289 239 346 0.63 Protein of unknown function (DUF2459) SseC PF04888.12 317 pGCA_001563565_00036 - 1310 0.005 16.5 0.2 1 1 3e-06 0.014 15.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family ThrE PF06738.12 241 pGCA_001563565_00036 - 1310 0.014 14.8 0.8 1 1 7.8e-06 0.035 13.5 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter Hormone_2 PF00123.20 28 pGCA_001563565_00036 - 1310 0.036 14.0 0.1 1 1 3.5e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone APOBEC_C PF05240.14 78 pGCA_001563565_00036 - 1310 0.061 13.3 0.4 1 1 6.9e-05 0.31 11.0 0.4 26 76 766 819 755 821 0.85 APOBEC-like C-terminal domain UvrA_DNA-bind PF17755.1 110 pGCA_001563565_00037 - 422 0.008 16.5 0.4 1 2 0.00015 2.8 8.3 0.1 24 65 32 73 19 86 0.82 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pGCA_001563565_00037 - 422 0.008 16.5 0.4 2 2 0.00087 16 5.9 0.0 15 33 92 109 88 125 0.75 UvrA DNA-binding domain Glyco_tranf_2_5 PF13712.6 210 pGCA_001563565_00038 - 267 0.00068 19.4 3.8 1 1 7.1e-08 0.0013 18.5 3.8 4 77 114 190 111 198 0.85 Glycosyltransferase like family TraG_N PF07916.11 467 pGCA_001563565_00039 - 838 1.5e-38 132.9 22.2 1 3 1.7e-42 1.5e-38 132.9 22.2 13 465 3 449 1 455 0.80 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pGCA_001563565_00039 - 838 1.5e-38 132.9 22.2 2 3 0.13 1.2e+03 -2.0 0.2 229 301 546 613 528 633 0.43 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pGCA_001563565_00039 - 838 1.5e-38 132.9 22.2 3 3 0.39 3.5e+03 -3.5 4.5 210 295 632 724 584 756 0.53 TraG-like protein, N-terminal region CHMI PF02962.15 124 pGCA_001563565_00039 - 838 0.0083 16.5 0.0 1 1 6.3e-06 0.057 13.8 0.0 46 120 68 144 11 148 0.82 5-carboxymethyl-2-hydroxymuconate isomerase YafQ_toxin PF15738.5 88 pGCA_001563565_00041 - 93 2.5e-24 85.4 5.0 1 1 6.3e-28 2.8e-24 85.2 5.0 1 88 4 91 4 91 0.93 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 pGCA_001563565_00041 - 93 9.5e-06 26.1 0.3 1 1 2.7e-09 1.2e-05 25.8 0.3 3 89 8 89 6 90 0.79 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 87 pGCA_001563565_00041 - 93 0.00012 22.0 2.5 1 1 3.3e-08 0.00015 21.7 2.5 3 84 8 91 6 93 0.81 ParE-like toxin of type II bacterial toxin-antitoxin system BTHB PF18410.1 72 pGCA_001563565_00041 - 93 0.086 12.7 1.5 1 3 0.04 1.8e+02 2.0 0.1 53 66 11 24 5 30 0.79 Basic tilted helix bundle domain BTHB PF18410.1 72 pGCA_001563565_00041 - 93 0.086 12.7 1.5 2 3 0.16 7.4e+02 0.1 0.0 45 61 31 47 22 48 0.82 Basic tilted helix bundle domain BTHB PF18410.1 72 pGCA_001563565_00041 - 93 0.086 12.7 1.5 3 3 0.0002 0.87 9.4 0.1 34 63 45 74 41 80 0.92 Basic tilted helix bundle domain HicB_lk_antitox PF15919.5 123 pGCA_001563565_00043 - 120 8.6e-09 35.6 0.3 1 2 4.3e-06 0.039 14.1 0.0 1 60 13 75 13 80 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 pGCA_001563565_00043 - 120 8.6e-09 35.6 0.3 2 2 4e-08 0.00036 20.7 0.1 88 123 78 109 73 109 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 pGCA_001563565_00043 - 120 0.16 11.9 0.0 1 1 3.3e-05 0.3 11.0 0.0 3 35 81 113 80 116 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HicA_toxin PF07927.12 58 pGCA_001563565_00044 - 75 1.7e-06 28.0 0.0 1 1 1.4e-10 2.5e-06 27.4 0.0 5 55 24 71 20 72 0.88 HicA toxin of bacterial toxin-antitoxin, Fic PF02661.18 97 pGCA_001563565_00046 - 133 4.4e-05 24.3 0.0 1 1 8.9e-09 8e-05 23.5 0.0 23 97 6 76 2 76 0.72 Fic/DOC family Como_LCP PF02247.16 373 pGCA_001563565_00046 - 133 0.056 12.0 0.1 1 1 7.2e-06 0.065 11.8 0.1 238 302 51 116 35 129 0.88 Large coat protein Pox_J1 PF03338.15 146 pGCA_001563565_00047 - 220 0.0028 17.5 1.7 1 2 0.006 53 3.6 0.2 51 93 13 54 9 88 0.79 Poxvirus J1 protein Pox_J1 PF03338.15 146 pGCA_001563565_00047 - 220 0.0028 17.5 1.7 2 2 1.1e-05 0.096 12.5 0.1 13 50 125 162 119 169 0.88 Poxvirus J1 protein DHHA1 PF02272.19 138 pGCA_001563565_00047 - 220 0.85 10.0 3.4 1 1 0.00019 1.7 9.1 3.2 16 92 68 148 55 160 0.83 DHHA1 domain DUF3825 PF12873.7 239 pGCA_001563565_00048 - 335 2.2e-28 99.3 0.4 1 1 1.9e-32 3.4e-28 98.7 0.4 1 239 106 330 106 330 0.86 Domain of unknown function (DUF3825) DUF447 PF04289.12 176 pGCA_001563565_00049 - 130 0.029 14.1 0.1 1 1 7.7e-06 0.046 13.5 0.1 42 111 21 87 19 96 0.85 Protein of unknown function (DUF447) WH1 PF00568.23 111 pGCA_001563565_00049 - 130 0.04 13.9 0.3 1 1 1e-05 0.063 13.2 0.3 9 80 28 98 20 106 0.84 WH1 domain Cob_adeno_trans PF01923.18 164 pGCA_001563565_00049 - 130 0.045 13.9 0.1 1 1 9.9e-06 0.059 13.5 0.1 25 104 37 127 32 130 0.79 Cobalamin adenosyltransferase IMS_C PF11799.8 118 pGCA_001563565_00051 - 127 0.00012 22.7 0.0 1 1 2.2e-08 0.00019 22.1 0.0 59 111 11 62 3 67 0.88 impB/mucB/samB family C-terminal domain Patched PF02460.18 811 pGCA_001563565_00051 - 127 0.024 12.8 0.2 1 1 3.1e-06 0.027 12.5 0.2 3 75 52 122 50 126 0.91 Patched family IMS PF00817.20 150 pGCA_001563565_00052 - 328 7.5e-25 87.7 1.9 1 2 1.5e-28 1.4e-24 86.8 0.2 1 149 10 192 10 193 0.86 impB/mucB/samB family IMS PF00817.20 150 pGCA_001563565_00052 - 328 7.5e-25 87.7 1.9 2 2 0.21 1.9e+03 -1.2 0.1 55 84 295 324 284 327 0.72 impB/mucB/samB family IMS_HHH PF11798.8 32 pGCA_001563565_00052 - 328 0.00023 21.3 0.1 1 2 0.95 8.5e+03 -2.5 0.0 3 12 18 28 16 30 0.56 IMS family HHH motif IMS_HHH PF11798.8 32 pGCA_001563565_00052 - 328 0.00023 21.3 0.1 2 2 1.2e-07 0.0011 19.2 0.1 6 32 218 245 215 245 0.92 IMS family HHH motif CooC_C PF15976.5 93 pGCA_001563565_00054 - 53 0.015 15.3 0.0 1 1 1.8e-06 0.016 15.2 0.0 12 46 5 39 1 43 0.89 CS1-pili formation C-terminal PemK_toxin PF02452.17 111 pGCA_001563565_00054 - 53 0.04 14.3 0.0 1 1 5.3e-06 0.048 14.1 0.0 81 108 2 29 1 32 0.91 PemK-like, MazF-like toxin of type II toxin-antitoxin system HTH_3 PF01381.22 55 pGCA_001563565_00055 - 44 3.7e-07 30.1 0.0 1 1 4.6e-10 4.1e-07 30.0 0.0 1 36 9 43 9 44 0.94 Helix-turn-helix HTH_26 PF13443.6 63 pGCA_001563565_00055 - 44 0.00017 21.9 0.0 1 1 2.1e-07 0.00019 21.8 0.0 2 35 9 42 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 pGCA_001563565_00055 - 44 0.00074 19.0 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 65 pGCA_001563565_00055 - 44 0.0012 18.7 0.0 1 1 1.4e-06 0.0013 18.6 0.0 1 32 9 41 9 44 0.81 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_19 PF12844.7 65 pGCA_001563565_00055 - 44 0.0012 18.8 0.0 1 1 1.5e-06 0.0013 18.7 0.0 4 37 9 42 7 44 0.90 Helix-turn-helix domain HTH_23 PF13384.6 50 pGCA_001563565_00055 - 44 0.002 17.8 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 pGCA_001563565_00055 - 44 0.0038 17.3 0.3 1 1 6e-06 0.0054 16.8 0.3 25 46 1 22 1 40 0.90 ENT domain HTH_31 PF13560.6 64 pGCA_001563565_00055 - 44 0.0048 17.2 0.0 1 1 5.8e-06 0.0052 17.1 0.0 12 40 15 43 9 44 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 pGCA_001563565_00055 - 44 0.0094 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 pGCA_001563565_00055 - 44 0.0099 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 pGCA_001563565_00055 - 44 0.013 14.8 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 pGCA_001563565_00055 - 44 0.02 14.8 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 pGCA_001563565_00055 - 44 0.021 14.6 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain Phage_CI_repr PF07022.13 65 pGCA_001563565_00055 - 44 0.028 14.5 0.0 1 1 3.5e-05 0.032 14.3 0.0 3 33 9 38 7 42 0.84 Bacteriophage CI repressor helix-turn-helix domain HTH_AsnC-type PF13404.6 42 pGCA_001563565_00055 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 51 pGCA_001563565_00055 - 44 0.031 14.5 0.0 1 2 0.02 18 5.6 0.0 4 16 9 21 9 25 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 pGCA_001563565_00055 - 44 0.031 14.5 0.0 2 2 0.0034 3 8.1 0.0 6 28 22 43 19 44 0.83 Helix-turn-helix domain Sigma70_r4 PF04545.16 50 pGCA_001563565_00055 - 44 0.035 13.6 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 MerR PF00376.23 38 pGCA_001563565_00055 - 44 0.08 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 pGCA_001563565_00055 - 44 0.08 12.7 0.0 2 2 0.0096 8.6 6.2 0.0 4 18 22 36 21 43 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 pGCA_001563565_00055 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 pGCA_001563565_00055 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain DUF5601 PF18151.1 65 pGCA_001563565_00057 - 133 0.0084 16.4 0.4 1 1 1.8e-06 0.016 15.5 0.4 12 55 44 89 29 90 0.86 Domain of unknown function (DUF5601) IFP_35_N PF07334.13 76 pGCA_001563565_00057 - 133 0.14 12.2 4.9 1 3 0.0049 44 4.2 0.0 57 72 5 20 3 23 0.89 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 pGCA_001563565_00057 - 133 0.14 12.2 4.9 2 3 0.15 1.3e+03 -0.5 0.1 1 20 42 61 29 73 0.74 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 pGCA_001563565_00057 - 133 0.14 12.2 4.9 3 3 0.00022 2 8.5 0.4 6 28 97 119 90 126 0.88 Interferon-induced 35 kDa protein (IFP 35) N-terminus Occludin_ELL PF07303.13 101 pGCA_001563565_00060 - 115 0.0057 17.4 1.0 1 1 1.7e-06 0.0076 17.0 1.0 43 99 28 86 15 87 0.87 Occludin homology domain DUF2935 PF11155.8 122 pGCA_001563565_00060 - 115 0.019 15.3 1.9 1 1 5.2e-06 0.023 15.0 1.9 26 118 20 113 12 115 0.78 Domain of unknown function (DUF2935) HAUS4 PF14735.6 235 pGCA_001563565_00060 - 115 0.038 13.7 0.1 1 1 9.8e-06 0.044 13.5 0.1 51 130 26 107 7 112 0.88 HAUS augmin-like complex subunit 4 DUF2207 PF09972.9 492 pGCA_001563565_00060 - 115 0.19 10.5 2.4 1 1 4.5e-05 0.2 10.4 2.4 319 390 10 97 2 113 0.62 Predicted membrane protein (DUF2207) Phage_NinH PF06322.11 60 pGCA_001563565_00061 - 47 0.1 12.5 0.2 1 1 7e-06 0.13 12.2 0.2 36 56 26 46 21 47 0.90 Phage NinH protein YafQ_toxin PF15738.5 88 pGCA_001563565_00065 - 106 1.6e-26 92.4 3.7 1 1 4.7e-30 2.1e-26 92.0 3.7 1 87 20 106 20 106 0.95 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 pGCA_001563565_00065 - 106 1.9e-06 28.4 0.6 1 1 4.9e-10 2.2e-06 28.2 0.6 6 89 23 105 18 106 0.80 ParE toxin of type II toxin-antitoxin system, parDE Ribosomal_S2 PF00318.20 215 pGCA_001563565_00065 - 106 0.0042 16.3 0.9 1 1 1.2e-06 0.0053 16.0 0.9 98 164 27 94 21 99 0.83 Ribosomal protein S2 ParE-like_toxin PF15781.5 87 pGCA_001563565_00065 - 106 0.017 15.1 1.6 1 1 7.8e-06 0.035 14.1 1.6 5 82 26 105 22 106 0.79 ParE-like toxin of type II bacterial toxin-antitoxin system WGR PF05406.15 80 pGCA_001563565_00070 - 75 4.2e-07 29.9 0.3 1 1 5.5e-11 4.9e-07 29.7 0.3 3 73 4 74 2 75 0.86 WGR domain Cadherin_pro PF08758.11 90 pGCA_001563565_00070 - 75 0.035 14.3 0.0 1 1 4.8e-06 0.043 14.0 0.0 15 44 26 55 12 62 0.80 Cadherin prodomain like FlaC_arch PF05377.11 55 pGCA_001563565_00071 - 76 0.0068 16.8 1.5 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pGCA_001563565_00071 - 76 0.0068 16.8 1.5 2 2 3.8e-07 0.0068 16.8 1.5 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) Phage_integrase PF00589.22 172 pGCA_001563565_00072 - 312 4.9e-24 85.0 0.5 1 1 3.2e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 pGCA_001563565_00072 - 312 1.2e-05 25.5 4.2 1 2 1.5e-08 3.9e-05 23.9 1.8 1 79 16 99 16 102 0.92 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pGCA_001563565_00072 - 312 1.2e-05 25.5 4.2 2 2 4 1e+04 -3.1 0.0 38 54 125 141 115 151 0.53 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 pGCA_001563565_00072 - 312 0.00017 21.8 4.6 1 3 6.8e-08 0.00017 21.8 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pGCA_001563565_00072 - 312 0.00017 21.8 4.6 2 3 1.1 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pGCA_001563565_00072 - 312 0.00017 21.8 4.6 3 3 2.1 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 85 pGCA_001563565_00072 - 312 0.0026 18.2 8.9 1 3 0.00099 2.5 8.6 0.3 35 80 5 49 2 53 0.86 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pGCA_001563565_00072 - 312 0.0026 18.2 8.9 2 3 3.4e-06 0.0086 16.5 5.3 2 79 16 101 15 104 0.90 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pGCA_001563565_00072 - 312 0.0026 18.2 8.9 3 3 2 5.2e+03 -2.0 0.1 8 22 285 299 281 302 0.77 Phage integrase, N-terminal SAM-like domain Phyto-Amp PF15438.6 195 pGCA_001563565_00072 - 312 0.0092 15.8 0.3 1 1 6.5e-06 0.017 15.0 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma Phage_int_SAM_3 PF14659.6 58 pGCA_001563565_00072 - 312 0.027 14.7 3.2 1 1 4.2e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain YbjN PF10722.9 127 pGCA_001563565_00072 - 312 0.029 14.4 0.3 1 2 0.00055 1.4 9.0 0.1 38 77 96 135 91 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 pGCA_001563565_00072 - 312 0.029 14.4 0.3 2 2 0.047 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator Prok-TraM PF09228.10 102 pGCA_001563565_00074 - 298 0.087 13.2 0.0 1 1 2e-05 0.18 12.2 0.0 13 93 35 115 24 120 0.89 Prokaryotic Transcriptional repressor TraM Flu_B_M2 PF04772.12 109 pGCA_001563565_00074 - 298 2.3 8.5 10.7 1 3 2.5e-05 0.22 11.8 0.4 43 101 80 138 67 141 0.90 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 pGCA_001563565_00074 - 298 2.3 8.5 10.7 2 3 0.013 1.1e+02 3.0 2.9 25 87 133 195 132 208 0.88 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 pGCA_001563565_00074 - 298 2.3 8.5 10.7 3 3 0.27 2.4e+03 -1.2 0.0 74 104 236 266 228 270 0.67 Influenza B matrix protein 2 (BM2) TagA PF12561.8 99 pGCA_001563565_00075 - 210 1.1 9.7 3.4 1 2 0.00094 17 5.9 0.7 31 90 68 127 55 133 0.81 ToxR activated gene A lipoprotein domain TagA PF12561.8 99 pGCA_001563565_00075 - 210 1.1 9.7 3.4 2 2 0.0027 49 4.4 0.1 63 88 184 209 166 210 0.84 ToxR activated gene A lipoprotein domain DUF4299 PF14132.6 301 pGCA_001563565_00076 - 116 3.2e-08 33.4 0.1 1 1 6.2e-12 3.7e-08 33.2 0.1 189 300 12 110 5 111 0.85 Domain of unknown function (DUF4299) A2M PF00207.22 92 pGCA_001563565_00076 - 116 0.11 12.3 0.0 1 1 2.6e-05 0.16 11.9 0.0 17 56 49 89 36 94 0.81 Alpha-2-macroglobulin family XPG_I PF00867.18 94 pGCA_001563565_00076 - 116 0.13 12.7 0.0 1 1 2.6e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region AHH PF14412.6 114 pGCA_001563565_00078 - 259 5.3e-16 58.7 1.4 1 1 1.1e-19 9.6e-16 57.9 1.4 10 113 155 241 148 242 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH RRF PF01765.19 162 pGCA_001563565_00078 - 259 0.12 12.3 4.7 1 2 1.8e-05 0.16 11.9 0.1 124 153 163 193 112 199 0.86 Ribosome recycling factor RRF PF01765.19 162 pGCA_001563565_00078 - 259 0.12 12.3 4.7 2 2 0.025 2.3e+02 1.7 1.1 121 146 215 242 207 256 0.69 Ribosome recycling factor Glyco_hydro_59 PF02057.15 294 pGCA_001563565_00080 - 287 0.022 14.0 1.2 1 1 2.4e-06 0.043 13.1 1.2 109 165 106 159 99 178 0.87 Glycosyl hydrolase family 59 Nucleoside_tran PF01733.18 309 pGCA_001563565_00082 - 289 0.15 11.4 2.7 1 1 4.6e-05 0.28 10.5 2.7 71 192 10 129 3 134 0.66 Nucleoside transporter Turandot PF07240.11 81 pGCA_001563565_00082 - 289 0.19 11.7 1.3 1 2 0.75 4.5e+03 -2.3 0.0 17 40 25 48 22 54 0.61 Stress-inducible humoral factor Turandot Turandot PF07240.11 81 pGCA_001563565_00082 - 289 0.19 11.7 1.3 2 2 8e-05 0.48 10.4 0.6 2 28 247 273 246 288 0.77 Stress-inducible humoral factor Turandot Sigma70_ner PF04546.13 204 pGCA_001563565_00082 - 289 0.2 11.5 6.4 1 2 0.03 1.8e+02 1.9 0.4 16 78 33 83 20 120 0.46 Sigma-70, non-essential region Sigma70_ner PF04546.13 204 pGCA_001563565_00082 - 289 0.2 11.5 6.4 2 2 1.7e-05 0.1 12.4 1.0 88 125 238 276 228 285 0.90 Sigma-70, non-essential region Rapsyn_N PF10579.9 80 pGCA_001563565_00084 - 358 0.53 10.4 3.8 1 3 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 pGCA_001563565_00084 - 358 0.53 10.4 3.8 2 3 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 pGCA_001563565_00084 - 358 0.53 10.4 3.8 3 3 0.24 4.3e+03 -2.1 0.1 19 34 340 355 329 356 0.74 Rapsyn N-terminal myristoylation and linker region DUF2768 PF10966.8 58 pGCA_001563565_00085 - 114 0.0086 16.5 0.2 1 2 1.9e-06 0.0086 16.5 0.2 22 57 37 72 35 72 0.95 Protein of unknown function (DUF2768) DUF2768 PF10966.8 58 pGCA_001563565_00085 - 114 0.0086 16.5 0.2 2 2 0.4 1.8e+03 -0.5 1.3 6 13 96 103 79 108 0.53 Protein of unknown function (DUF2768) DiS_P_DiS PF06750.13 84 pGCA_001563565_00085 - 114 0.027 14.6 0.4 1 1 1.2e-05 0.054 13.6 0.4 29 73 6 50 2 59 0.84 Bacterial Peptidase A24 N-terminal domain DZR PF12773.7 49 pGCA_001563565_00085 - 114 0.028 14.4 0.3 1 1 8.3e-06 0.037 14.0 0.3 13 37 5 38 2 45 0.88 Double zinc ribbon zinc_ribbon_4 PF13717.6 36 pGCA_001563565_00085 - 114 0.14 12.1 4.3 1 2 0.072 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_001563565_00085 - 114 0.14 12.1 4.3 2 2 3.5e-05 0.16 12.0 0.3 3 16 30 43 29 47 0.86 zinc-ribbon domain Myc-LZ PF02344.15 31 pGCA_001563565_00086 - 34 0.045 13.9 0.4 1 1 3e-06 0.054 13.6 0.4 8 18 15 25 14 27 0.94 Myc leucine zipper domain Importin_rep PF18773.1 40 pGCA_001563565_00087 - 260 0.018 14.7 0.1 1 1 6.7e-06 0.04 13.6 0.1 16 27 231 242 226 249 0.90 Importin 13 repeat DUF327 PF03885.13 143 pGCA_001563565_00087 - 260 0.075 13.0 0.1 1 3 0.41 2.5e+03 -1.7 0.1 97 109 43 55 22 76 0.50 Protein of unknown function (DUF327) DUF327 PF03885.13 143 pGCA_001563565_00087 - 260 0.075 13.0 0.1 2 3 0.96 5.7e+03 -2.8 0.0 22 24 140 142 116 165 0.49 Protein of unknown function (DUF327) DUF327 PF03885.13 143 pGCA_001563565_00087 - 260 0.075 13.0 0.1 3 3 1.3e-05 0.075 13.0 0.1 48 85 217 254 191 258 0.89 Protein of unknown function (DUF327) BLOC1_2 PF10046.9 96 pGCA_001563565_00087 - 260 0.94 9.8 4.4 1 3 2.1 1.2e+04 -3.4 0.1 38 61 48 71 47 73 0.65 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pGCA_001563565_00087 - 260 0.94 9.8 4.4 2 3 4.3e-05 0.26 11.6 0.4 22 75 115 172 110 179 0.87 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pGCA_001563565_00087 - 260 0.94 9.8 4.4 3 3 0.81 4.8e+03 -2.1 0.0 70 79 245 254 228 258 0.43 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GPD PF05954.11 304 pGCA_001563565_00088 - 833 5.9e-18 65.2 0.0 1 1 1e-21 9.4e-18 64.5 0.0 22 281 73 360 45 376 0.76 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 pGCA_001563565_00088 - 833 0.11 12.2 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 pGCA_001563565_00088 - 833 0.11 12.2 0.0 2 2 0.00042 3.8 7.2 0.0 19 49 456 486 447 513 0.81 TCL1/MTCP1 family T6SS_TssG PF06996.11 299 pGCA_001563565_00089 - 302 1.9e-47 161.9 0.0 1 1 1.2e-51 2.2e-47 161.8 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG T6SS_TssF PF05947.12 603 pGCA_001563565_00090 - 573 1.6e-110 370.4 0.0 1 1 1e-114 1.8e-110 370.3 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF GPW_gp25 PF04965.14 95 pGCA_001563565_00091 - 130 2.2e-09 36.9 0.0 1 1 4.8e-13 2.9e-09 36.6 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 pGCA_001563565_00091 - 130 0.021 14.7 0.3 1 1 4.5e-06 0.027 14.3 0.3 94 159 21 87 5 92 0.87 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 pGCA_001563565_00091 - 130 0.072 12.6 0.2 1 2 2.9e-05 0.17 11.3 0.1 82 121 5 46 1 64 0.84 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 pGCA_001563565_00091 - 130 0.072 12.6 0.2 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 422 pGCA_001563565_00092 - 484 6e-170 565.6 0.0 1 1 7.9e-174 7.1e-170 565.3 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 pGCA_001563565_00092 - 484 0.33 11.0 2.6 1 4 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pGCA_001563565_00092 - 484 0.33 11.0 2.6 2 4 1.5 1.4e+04 -3.9 0.0 103 117 130 143 127 147 0.66 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pGCA_001563565_00092 - 484 0.33 11.0 2.6 3 4 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pGCA_001563565_00092 - 484 0.33 11.0 2.6 4 4 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 155 pGCA_001563565_00093 - 161 6.4e-52 175.5 3.9 1 1 8e-56 7.2e-52 175.3 3.9 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 pGCA_001563565_00093 - 161 0.14 10.8 0.0 1 1 1.8e-05 0.16 10.5 0.0 171 227 55 111 40 127 0.90 Chitin synthase T6SS_VasJ PF16989.5 255 pGCA_001563565_00094 - 415 2.9e-12 46.6 0.0 1 1 9.3e-16 4.2e-12 46.1 0.0 3 153 176 323 174 408 0.83 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 pGCA_001563565_00094 - 415 0.00014 22.0 0.2 1 2 1.8e-07 0.0008 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 pGCA_001563565_00094 - 415 0.00014 22.0 0.2 2 2 0.31 1.4e+03 -0.6 0.0 47 71 185 209 162 212 0.83 ImpA, N-terminal, type VI secretion system TetR_C_24 PF17932.1 114 pGCA_001563565_00094 - 415 0.19 12.0 0.0 1 1 8.8e-05 0.4 11.0 0.0 20 68 71 119 62 132 0.87 Tetracyclin repressor-like, C-terminal domain PX PF00787.24 113 pGCA_001563565_00094 - 415 0.28 11.2 14.0 1 3 0.00025 1.1 9.2 2.4 31 111 33 130 20 131 0.67 PX domain PX PF00787.24 113 pGCA_001563565_00094 - 415 0.28 11.2 14.0 2 3 0.0042 19 5.3 0.1 16 111 155 274 132 276 0.64 PX domain PX PF00787.24 113 pGCA_001563565_00094 - 415 0.28 11.2 14.0 3 3 0.052 2.3e+02 1.8 0.7 22 97 316 396 296 404 0.70 PX domain Prok-TraM PF09228.10 102 pGCA_001587035_00001 - 298 0.085 13.2 0.0 1 1 2e-05 0.18 12.2 0.0 13 93 35 115 24 120 0.89 Prokaryotic Transcriptional repressor TraM Flu_B_M2 PF04772.12 109 pGCA_001587035_00001 - 298 3 8.1 11.1 1 3 2e-05 0.18 12.0 0.3 43 102 80 139 62 142 0.90 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 pGCA_001587035_00001 - 298 3 8.1 11.1 2 3 0.017 1.5e+02 2.6 2.9 26 87 134 195 133 210 0.87 Influenza B matrix protein 2 (BM2) Flu_B_M2 PF04772.12 109 pGCA_001587035_00001 - 298 3 8.1 11.1 3 3 0.26 2.3e+03 -1.2 0.0 73 104 235 266 227 270 0.68 Influenza B matrix protein 2 (BM2) TagA PF12561.8 99 pGCA_001587035_00002 - 210 1.1 9.7 3.4 1 2 0.00094 17 5.9 0.7 31 90 68 127 55 133 0.81 ToxR activated gene A lipoprotein domain TagA PF12561.8 99 pGCA_001587035_00002 - 210 1.1 9.7 3.4 2 2 0.0027 49 4.4 0.1 63 88 184 209 166 210 0.84 ToxR activated gene A lipoprotein domain DUF4299 PF14132.6 301 pGCA_001587035_00003 - 116 3.2e-08 33.4 0.1 1 1 6.2e-12 3.7e-08 33.2 0.1 189 300 12 110 5 111 0.85 Domain of unknown function (DUF4299) A2M PF00207.22 92 pGCA_001587035_00003 - 116 0.11 12.3 0.0 1 1 2.6e-05 0.16 11.9 0.0 17 56 49 89 36 94 0.81 Alpha-2-macroglobulin family XPG_I PF00867.18 94 pGCA_001587035_00003 - 116 0.13 12.7 0.0 1 1 2.6e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region AHH PF14412.6 114 pGCA_001587035_00005 - 259 5.3e-16 58.7 1.4 1 1 1.1e-19 9.6e-16 57.9 1.4 10 113 155 241 148 242 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH RRF PF01765.19 162 pGCA_001587035_00005 - 259 0.12 12.3 4.7 1 2 1.8e-05 0.16 11.9 0.1 124 153 163 193 112 199 0.86 Ribosome recycling factor RRF PF01765.19 162 pGCA_001587035_00005 - 259 0.12 12.3 4.7 2 2 0.025 2.3e+02 1.7 1.1 121 146 215 242 207 256 0.69 Ribosome recycling factor Glyco_hydro_59 PF02057.15 294 pGCA_001587035_00007 - 287 0.022 14.0 1.2 1 1 2.4e-06 0.043 13.1 1.2 109 165 106 159 99 178 0.87 Glycosyl hydrolase family 59 Nucleoside_tran PF01733.18 309 pGCA_001587035_00009 - 289 0.15 11.4 2.7 1 1 4.6e-05 0.28 10.5 2.7 71 192 10 129 3 134 0.66 Nucleoside transporter Turandot PF07240.11 81 pGCA_001587035_00009 - 289 0.19 11.7 1.3 1 2 0.75 4.5e+03 -2.3 0.0 17 40 25 48 22 54 0.61 Stress-inducible humoral factor Turandot Turandot PF07240.11 81 pGCA_001587035_00009 - 289 0.19 11.7 1.3 2 2 8e-05 0.48 10.4 0.6 2 28 247 273 246 288 0.77 Stress-inducible humoral factor Turandot Sigma70_ner PF04546.13 204 pGCA_001587035_00009 - 289 0.2 11.5 6.4 1 2 0.03 1.8e+02 1.9 0.4 16 78 33 83 20 120 0.46 Sigma-70, non-essential region Sigma70_ner PF04546.13 204 pGCA_001587035_00009 - 289 0.2 11.5 6.4 2 2 1.7e-05 0.1 12.4 1.0 88 125 238 276 228 285 0.90 Sigma-70, non-essential region Rapsyn_N PF10579.9 80 pGCA_001587035_00011 - 358 0.53 10.4 3.8 1 3 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 pGCA_001587035_00011 - 358 0.53 10.4 3.8 2 3 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 pGCA_001587035_00011 - 358 0.53 10.4 3.8 3 3 0.24 4.3e+03 -2.1 0.1 19 34 340 355 329 356 0.74 Rapsyn N-terminal myristoylation and linker region DUF2768 PF10966.8 58 pGCA_001587035_00012 - 114 0.0086 16.5 0.2 1 2 1.9e-06 0.0086 16.5 0.2 22 57 37 72 35 72 0.95 Protein of unknown function (DUF2768) DUF2768 PF10966.8 58 pGCA_001587035_00012 - 114 0.0086 16.5 0.2 2 2 0.4 1.8e+03 -0.5 1.3 6 13 96 103 79 108 0.53 Protein of unknown function (DUF2768) DiS_P_DiS PF06750.13 84 pGCA_001587035_00012 - 114 0.027 14.6 0.4 1 1 1.2e-05 0.054 13.6 0.4 29 73 6 50 2 59 0.84 Bacterial Peptidase A24 N-terminal domain DZR PF12773.7 49 pGCA_001587035_00012 - 114 0.028 14.4 0.3 1 1 8.3e-06 0.037 14.0 0.3 13 37 5 38 2 45 0.88 Double zinc ribbon zinc_ribbon_4 PF13717.6 36 pGCA_001587035_00012 - 114 0.14 12.1 4.3 1 2 0.072 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_001587035_00012 - 114 0.14 12.1 4.3 2 2 3.5e-05 0.16 12.0 0.3 3 16 30 43 29 47 0.86 zinc-ribbon domain Importin_rep PF18773.1 40 pGCA_001587035_00013 - 260 0.018 14.7 0.1 1 1 6.7e-06 0.04 13.6 0.1 16 27 231 242 226 249 0.90 Importin 13 repeat DUF327 PF03885.13 143 pGCA_001587035_00013 - 260 0.075 13.0 0.1 1 3 0.41 2.5e+03 -1.7 0.1 97 109 43 55 22 76 0.50 Protein of unknown function (DUF327) DUF327 PF03885.13 143 pGCA_001587035_00013 - 260 0.075 13.0 0.1 2 3 0.96 5.7e+03 -2.8 0.0 22 24 140 142 116 165 0.49 Protein of unknown function (DUF327) DUF327 PF03885.13 143 pGCA_001587035_00013 - 260 0.075 13.0 0.1 3 3 1.3e-05 0.075 13.0 0.1 48 85 217 254 191 258 0.89 Protein of unknown function (DUF327) BLOC1_2 PF10046.9 96 pGCA_001587035_00013 - 260 0.94 9.8 4.4 1 3 2.1 1.2e+04 -3.4 0.1 38 61 48 71 47 73 0.65 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pGCA_001587035_00013 - 260 0.94 9.8 4.4 2 3 4.3e-05 0.26 11.6 0.4 22 75 115 172 110 179 0.87 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pGCA_001587035_00013 - 260 0.94 9.8 4.4 3 3 0.81 4.8e+03 -2.1 0.0 70 79 245 254 228 258 0.43 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GPD PF05954.11 304 pGCA_001587035_00014 - 833 5.9e-18 65.2 0.0 1 1 1e-21 9.4e-18 64.5 0.0 22 281 73 360 45 376 0.76 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 pGCA_001587035_00014 - 833 0.11 12.2 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 pGCA_001587035_00014 - 833 0.11 12.2 0.0 2 2 0.00042 3.8 7.2 0.0 19 49 456 486 447 513 0.81 TCL1/MTCP1 family T6SS_TssG PF06996.11 299 pGCA_001587035_00015 - 302 3.5e-47 161.1 0.0 1 1 2.2e-51 3.9e-47 160.9 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG T6SS_TssF PF05947.12 603 pGCA_001587035_00016 - 573 2.2e-110 370.0 0.0 1 1 1.4e-114 2.5e-110 369.8 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF GPW_gp25 PF04965.14 95 pGCA_001587035_00017 - 130 2.2e-09 36.9 0.0 1 1 4.8e-13 2.9e-09 36.6 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 pGCA_001587035_00017 - 130 0.021 14.7 0.3 1 1 4.5e-06 0.027 14.3 0.3 94 159 21 87 5 92 0.87 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 pGCA_001587035_00017 - 130 0.072 12.6 0.2 1 2 2.9e-05 0.17 11.3 0.1 82 121 5 46 1 64 0.84 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 pGCA_001587035_00017 - 130 0.072 12.6 0.2 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 422 pGCA_001587035_00018 - 484 6e-170 565.6 0.0 1 1 7.9e-174 7.1e-170 565.3 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 pGCA_001587035_00018 - 484 0.33 11.0 2.6 1 4 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pGCA_001587035_00018 - 484 0.33 11.0 2.6 2 4 1.5 1.4e+04 -3.9 0.0 103 117 130 143 127 147 0.66 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pGCA_001587035_00018 - 484 0.33 11.0 2.6 3 4 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pGCA_001587035_00018 - 484 0.33 11.0 2.6 4 4 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 155 pGCA_001587035_00019 - 161 6.4e-52 175.5 3.9 1 1 8e-56 7.2e-52 175.3 3.9 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 pGCA_001587035_00019 - 161 0.14 10.8 0.0 1 1 1.8e-05 0.16 10.5 0.0 171 227 55 111 40 127 0.90 Chitin synthase T6SS_VasJ PF16989.5 255 pGCA_001587035_00020 - 411 1.2e-12 47.9 0.0 1 1 2.9e-16 1.7e-12 47.4 0.0 3 153 172 319 170 404 0.84 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 pGCA_001587035_00020 - 411 0.00013 22.0 0.2 1 2 1.3e-07 0.00079 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 pGCA_001587035_00020 - 411 0.00013 22.0 0.2 2 2 0.23 1.4e+03 -0.6 0.0 47 71 181 205 158 208 0.83 ImpA, N-terminal, type VI secretion system PX PF00787.24 113 pGCA_001587035_00020 - 411 0.0034 17.4 13.8 1 3 9.9e-06 0.059 13.3 1.9 31 111 33 126 19 127 0.76 PX domain PX PF00787.24 113 pGCA_001587035_00020 - 411 0.0034 17.4 13.8 2 3 0.00062 3.7 7.6 0.2 16 112 151 271 128 272 0.68 PX domain PX PF00787.24 113 pGCA_001587035_00020 - 411 0.0034 17.4 13.8 3 3 0.038 2.3e+02 1.8 0.7 22 97 312 392 292 400 0.70 PX domain T6SS-SciN PF12790.7 120 pGCA_001587035_00021 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 428 pGCA_001587035_00022 - 465 4.7e-112 374.8 0.0 1 1 3.1e-116 5.5e-112 374.6 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 205 pGCA_001587035_00023 - 257 3.6e-35 121.5 0.0 1 1 2.3e-39 4.2e-35 121.4 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_HCP PF05638.12 129 pGCA_001587035_00024 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 259 pGCA_001587035_00025 - 1175 6.2e-41 140.5 0.0 1 1 4.1e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 pGCA_001587035_00025 - 1175 5.9e-40 137.1 0.5 1 1 4.1e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 pGCA_001587035_00025 - 1175 8.2e-27 94.5 2.1 1 1 4.9e-30 1.3e-26 93.9 2.1 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 pGCA_001587035_00025 - 1175 0.0003 20.7 0.0 1 2 8.9e-06 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 pGCA_001587035_00025 - 1175 0.0003 20.7 0.0 2 2 0.047 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 pGCA_001587035_00025 - 1175 0.0011 19.0 0.1 1 2 1.7e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 pGCA_001587035_00025 - 1175 0.0011 19.0 0.1 2 2 4.1 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 pGCA_001587035_00025 - 1175 0.0041 16.8 4.8 1 3 1.4e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 pGCA_001587035_00025 - 1175 0.0041 16.8 4.8 2 3 0.13 3.4e+02 0.8 0.0 41 77 451 487 432 583 0.80 O-Antigen ligase Wzy_C PF04932.15 155 pGCA_001587035_00025 - 1175 0.0041 16.8 4.8 3 3 0.076 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 pGCA_001587035_00025 - 1175 0.055 13.2 0.1 1 2 0.00017 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pGCA_001587035_00025 - 1175 0.055 13.2 0.1 2 2 0.76 1.9e+03 -1.3 0.0 22 37 841 856 831 870 0.75 P-loop containing region of AAA domain FHA PF00498.26 69 pGCA_001587035_00026 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 pGCA_001587035_00026 - 299 0.0007 19.9 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 pGCA_001587035_00026 - 299 0.0007 19.9 0.0 2 2 0.23 1.4e+03 -0.3 0.0 31 57 199 225 198 231 0.89 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 pGCA_001587035_00026 - 299 0.05 14.0 3.1 1 2 0.044 2.6e+02 2.1 0.1 18 58 107 147 105 150 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 pGCA_001587035_00026 - 299 0.05 14.0 3.1 2 2 7.4e-05 0.44 11.0 0.9 21 82 151 212 146 218 0.92 Ferredoxin-fold anticodon binding domain DUF3870 PF12986.7 94 pGCA_001587035_00027 - 410 0.098 12.9 0.0 1 1 1.3e-05 0.22 11.7 0.0 11 62 4 58 1 70 0.79 Domain of unknown function (DUF3870) DUF2459 PF09601.10 171 pGCA_001587035_00030 - 432 0.053 13.3 1.1 1 2 1.3e-05 0.12 12.2 0.1 87 163 131 199 119 201 0.72 Protein of unknown function (DUF2459) DUF2459 PF09601.10 171 pGCA_001587035_00030 - 432 0.053 13.3 1.1 2 2 0.32 2.8e+03 -2.1 0.1 143 143 289 289 239 346 0.63 Protein of unknown function (DUF2459) BLOC1_2 PF10046.9 96 pGCA_001587035_00030 - 432 0.1 12.9 2.0 1 2 2.8e-05 0.25 11.7 1.0 44 95 263 314 260 315 0.94 Biogenesis of lysosome-related organelles complex-1 subunit 2 BLOC1_2 PF10046.9 96 pGCA_001587035_00030 - 432 0.1 12.9 2.0 2 2 2 1.8e+04 -4.1 0.0 20 30 349 359 345 364 0.58 Biogenesis of lysosome-related organelles complex-1 subunit 2 Put_DNA-bind_N PF06971.13 49 pGCA_001587035_00031 - 141 0.016 15.2 0.0 1 1 1.5e-06 0.027 14.5 0.0 11 34 4 27 3 30 0.95 Putative DNA-binding protein N-terminus Toprim_3 PF13362.6 95 pGCA_001587035_00032 - 409 2.4e-08 34.2 0.1 1 2 1.4 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pGCA_001587035_00032 - 409 2.4e-08 34.2 0.1 2 2 1.4e-11 6.4e-08 32.9 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pGCA_001587035_00032 - 409 0.017 15.4 0.2 1 2 0.024 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pGCA_001587035_00032 - 409 0.017 15.4 0.2 2 2 0.00027 1.2 9.4 0.0 15 83 283 359 277 382 0.82 Retrotransposon gag protein DUF2315 PF10231.9 123 pGCA_001587035_00032 - 409 0.023 14.8 6.8 1 3 0.00028 1.3 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 pGCA_001587035_00032 - 409 0.023 14.8 6.8 2 3 0.0016 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 pGCA_001587035_00032 - 409 0.023 14.8 6.8 3 3 1.3 5.9e+03 -2.7 0.0 20 90 355 373 339 384 0.54 Apoptogenic protein 1 5_3_exonuc PF01367.20 97 pGCA_001587035_00032 - 409 0.25 12.0 1.7 1 2 0.62 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_001587035_00032 - 409 0.25 12.0 1.7 2 2 0.00012 0.53 10.9 0.2 15 81 322 384 321 401 0.72 5'-3' exonuclease, C-terminal SAM fold NYN PF01936.18 147 pGCA_001587035_00034 - 180 1.1e-09 39.0 0.0 1 1 2e-13 1.2e-09 38.8 0.0 60 123 74 146 15 161 0.80 NYN domain Peroxin-22 PF12827.7 113 pGCA_001587035_00034 - 180 0.004 17.0 0.6 1 1 1.3e-06 0.0079 16.1 0.6 25 105 81 162 46 169 0.76 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 pGCA_001587035_00034 - 180 0.029 15.0 0.0 1 1 8.3e-06 0.049 14.2 0.0 61 103 100 142 77 142 0.87 PIN domain PTS-HPr PF00381.19 82 pGCA_001587035_00035 - 44 0.17 12.1 0.0 1 1 1.1e-05 0.19 12.0 0.0 34 61 13 39 2 43 0.75 PTS HPr component phosphorylation site RHH_7 PF16777.5 74 pGCA_001587035_00036 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 pGCA_001587035_00036 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal AAA_31 PF13614.6 177 pGCA_001587035_00037 - 186 6.9e-05 22.8 0.5 1 2 2.1e-07 0.00093 19.2 0.1 3 26 2 25 1 31 0.91 AAA domain AAA_31 PF13614.6 177 pGCA_001587035_00037 - 186 6.9e-05 22.8 0.5 2 2 0.04 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pGCA_001587035_00037 - 186 0.001 19.1 0.5 1 1 1.9e-06 0.0086 16.1 0.5 1 55 3 89 3 167 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_001587035_00037 - 186 0.014 14.8 0.0 1 1 4.2e-06 0.019 14.4 0.0 17 109 69 171 61 180 0.77 short chain dehydrogenase ParA PF10609.9 246 pGCA_001587035_00037 - 186 0.17 11.3 0.0 1 1 5.9e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pGCA_001587035_00038 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pGCA_001587035_00038 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 pGCA_001587035_00039 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pGCA_001587035_00039 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pGCA_001587035_00039 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pGCA_001587035_00039 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pGCA_001587035_00039 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pGCA_001587035_00039 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 pGCA_001587035_00040 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pGCA_001587035_00040 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pGCA_001587035_00040 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pGCA_001587035_00040 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pGCA_001587035_00040 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pGCA_001587035_00040 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pGCA_001587035_00040 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pGCA_001587035_00040 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pGCA_001587035_00040 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 pGCA_001587035_00041 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pGCA_001587035_00041 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain CtsR_C PF17727.1 72 pGCA_001587035_00042 - 120 0.047 13.8 0.3 1 2 0.00025 4.4 7.5 0.0 3 38 25 60 22 67 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pGCA_001587035_00042 - 120 0.047 13.8 0.3 2 2 0.0022 40 4.4 0.0 28 48 68 88 65 102 0.85 CtsR C-terminal dimerization domain W2 PF02020.18 79 pGCA_001587035_00043 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pGCA_001587035_00043 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pGCA_001587035_00043 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Asp-B-Hydro_N PF05279.11 243 pGCA_001587035_00045 - 114 2.9 7.9 12.2 1 1 0.00019 3.4 7.7 12.2 114 210 6 104 3 113 0.78 Aspartyl beta-hydroxylase N-terminal region GTP_EFTU PF00009.27 194 pGCA_001587035_00046 - 639 8.1e-59 198.4 0.4 1 1 5.7e-62 1.1e-58 198.0 0.4 2 191 2 237 1 240 0.93 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pGCA_001587035_00046 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pGCA_001587035_00046 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pGCA_001587035_00046 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pGCA_001587035_00046 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pGCA_001587035_00046 - 639 1.8e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pGCA_001587035_00046 - 639 0.00029 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pGCA_001587035_00046 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pGCA_001587035_00046 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pGCA_001587035_00046 - 639 0.047 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 pGCA_001587035_00048 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pGCA_001587035_00048 - 473 0.022 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain Topoisom_bac PF01131.20 413 pGCA_001587035_00049 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pGCA_001587035_00049 - 730 5.6e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pGCA_001587035_00049 - 730 5.6e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pGCA_001587035_00049 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pGCA_001587035_00049 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pGCA_001587035_00049 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_001587035_00049 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_001587035_00049 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pGCA_001587035_00049 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pGCA_001587035_00049 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pGCA_001587035_00049 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pGCA_001587035_00049 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pGCA_001587035_00049 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pGCA_001587035_00049 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pGCA_001587035_00049 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pGCA_001587035_00049 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pGCA_001587035_00049 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pGCA_001587035_00049 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pGCA_001587035_00049 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pGCA_001587035_00049 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pGCA_001587035_00049 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pGCA_001587035_00049 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_001587035_00049 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_001587035_00049 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pGCA_001587035_00049 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pGCA_001587035_00049 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pGCA_001587035_00049 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_001587035_00049 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pGCA_001587035_00049 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pGCA_001587035_00049 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pGCA_001587035_00049 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pGCA_001587035_00049 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pGCA_001587035_00049 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pGCA_001587035_00049 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 pGCA_001587035_00050 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pGCA_001587035_00050 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 pGCA_001587035_00051 - 265 0.038 13.8 0.4 1 2 0.9 5.4e+03 -2.9 0.1 129 153 22 46 15 49 0.68 PRELI-like family PRELI PF04707.14 157 pGCA_001587035_00051 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pGCA_001587035_00051 - 265 0.077 11.7 0.0 1 1 1.8e-05 0.1 11.2 0.0 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pGCA_001587035_00051 - 265 0.74 9.8 5.2 1 3 0.4 2.4e+03 -1.6 0.1 113 134 21 42 5 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_001587035_00051 - 265 0.74 9.8 5.2 2 3 7.4e-05 0.44 10.5 1.9 42 108 120 185 89 189 0.81 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_001587035_00051 - 265 0.74 9.8 5.2 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 pGCA_001587035_00052 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 pGCA_001587035_00053 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pGCA_001587035_00053 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pGCA_001587035_00053 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pGCA_001587035_00053 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pGCA_001587035_00053 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 pGCA_001587035_00054 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_001587035_00054 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pGCA_001587035_00054 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_001587035_00054 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pGCA_001587035_00054 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Phage_pRha PF09669.10 88 pGCA_001587035_00055 - 221 3.4e-21 75.6 0.1 1 2 1.9e-25 3.4e-21 75.6 0.1 2 88 38 125 37 125 0.92 Phage regulatory protein Rha (Phage_pRha) Phage_pRha PF09669.10 88 pGCA_001587035_00055 - 221 3.4e-21 75.6 0.1 2 2 0.21 3.7e+03 -1.4 0.4 38 45 198 209 140 220 0.65 Phage regulatory protein Rha (Phage_pRha) T2SSE PF00437.20 273 pGCA_001587035_00056 - 332 6.4e-54 182.8 0.0 1 1 1.3e-56 7.4e-54 182.6 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pGCA_001587035_00056 - 332 6.1e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_001587035_00056 - 332 0.00016 21.1 0.0 1 1 4.3e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pGCA_001587035_00056 - 332 0.00022 20.8 0.0 1 1 6.5e-07 0.00038 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pGCA_001587035_00056 - 332 0.0014 18.9 0.0 1 1 4.4e-06 0.0026 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pGCA_001587035_00056 - 332 0.0026 17.5 0.0 1 1 9.1e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pGCA_001587035_00056 - 332 0.003 17.3 0.0 1 1 8.2e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pGCA_001587035_00056 - 332 0.0037 17.3 0.0 1 1 1.3e-05 0.0073 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pGCA_001587035_00056 - 332 0.0049 15.9 0.0 1 1 1.2e-05 0.0072 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pGCA_001587035_00056 - 332 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pGCA_001587035_00056 - 332 0.0087 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pGCA_001587035_00056 - 332 0.0088 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pGCA_001587035_00056 - 332 0.018 14.8 0.0 1 1 6.3e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pGCA_001587035_00056 - 332 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 244 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pGCA_001587035_00056 - 332 0.022 13.7 0.0 1 1 5.8e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pGCA_001587035_00056 - 332 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pGCA_001587035_00056 - 332 0.024 14.4 0.0 1 1 9.2e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pGCA_001587035_00056 - 332 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pGCA_001587035_00056 - 332 0.035 13.5 0.0 1 1 9.7e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pGCA_001587035_00056 - 332 0.037 14.4 0.0 1 1 0.00018 0.11 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pGCA_001587035_00056 - 332 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pGCA_001587035_00056 - 332 0.039 13.2 0.0 1 1 0.00012 0.069 12.4 0.0 14 49 158 193 145 207 0.83 Zeta toxin PRK PF00485.18 197 pGCA_001587035_00056 - 332 0.052 13.3 0.0 1 1 0.00019 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pGCA_001587035_00056 - 332 0.063 11.9 0.0 1 1 0.00015 0.086 11.4 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pGCA_001587035_00056 - 332 0.065 13.6 0.0 1 1 0.00017 0.1 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pGCA_001587035_00056 - 332 0.085 12.8 0.4 1 1 0.00039 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pGCA_001587035_00056 - 332 0.089 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pGCA_001587035_00056 - 332 0.11 12.4 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pGCA_001587035_00056 - 332 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pGCA_001587035_00056 - 332 0.2 11.4 0.0 1 1 0.00054 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pGCA_001587035_00056 - 332 0.29 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pGCA_001587035_00056 - 332 0.29 11.6 3.1 2 2 0.00055 0.32 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 pGCA_001587035_00057 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pGCA_001587035_00057 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 pGCA_001587035_00058 - 295 6.2e-55 186.2 1.7 1 1 1.1e-58 1e-54 185.5 1.7 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pGCA_001587035_00058 - 295 0.082 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pGCA_001587035_00058 - 295 0.082 12.7 0.3 2 2 1.1 9.7e+03 -3.7 0.1 50 62 130 142 124 149 0.68 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 pGCA_001587035_00059 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pGCA_001587035_00059 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 pGCA_001587035_00060 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pGCA_001587035_00060 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 pGCA_001587035_00061 - 330 2.7e-29 102.5 30.5 1 1 3e-33 2.7e-29 102.5 30.5 1 214 38 250 38 251 0.92 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pGCA_001587035_00061 - 330 0.21 11.4 1.5 1 2 0.13 1.2e+03 -0.6 0.1 38 65 68 101 59 114 0.50 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pGCA_001587035_00061 - 330 0.21 11.4 1.5 2 2 7.3e-05 0.65 9.8 0.1 29 81 232 286 201 298 0.76 T-cell leukemia translocation-altered T4SS PF07996.11 197 pGCA_001587035_00062 - 328 1.9e-28 100.2 13.4 1 1 1e-31 2.7e-28 99.7 13.4 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pGCA_001587035_00062 - 328 0.0072 16.4 1.8 1 3 1 2.6e+03 -1.4 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pGCA_001587035_00062 - 328 0.0072 16.4 1.8 2 3 8.3e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pGCA_001587035_00062 - 328 0.0072 16.4 1.8 3 3 1.4 3.7e+03 -1.9 0.0 62 79 302 319 292 327 0.75 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pGCA_001587035_00062 - 328 0.0092 16.7 6.0 1 2 0.046 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pGCA_001587035_00062 - 328 0.0092 16.7 6.0 2 2 3.6e-06 0.0092 16.7 6.0 49 125 225 315 205 322 0.78 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 pGCA_001587035_00062 - 328 0.072 13.8 1.0 1 2 2.2 5.8e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pGCA_001587035_00062 - 328 0.072 13.8 1.0 2 2 2.8e-05 0.072 13.8 1.0 32 84 209 270 199 295 0.83 von Willebrand factor type A domain Phage_holin_6_1 PF09682.10 101 pGCA_001587035_00062 - 328 0.13 12.7 8.7 1 2 0.00011 0.27 11.7 0.3 4 62 77 136 75 154 0.81 Bacteriophage holin of superfamily 6 (Holin_LLH) Phage_holin_6_1 PF09682.10 101 pGCA_001587035_00062 - 328 0.13 12.7 8.7 2 2 0.02 51 4.4 2.4 36 90 268 323 251 327 0.83 Bacteriophage holin of superfamily 6 (Holin_LLH) DUF3752 PF12572.8 152 pGCA_001587035_00062 - 328 2.3 8.7 8.3 1 2 0.0038 9.6 6.7 0.3 21 49 106 136 98 152 0.70 Protein of unknown function (DUF3752) DUF3752 PF12572.8 152 pGCA_001587035_00062 - 328 2.3 8.7 8.3 2 2 0.012 31 5.1 2.6 33 106 233 320 218 328 0.76 Protein of unknown function (DUF3752) WXG100 PF06013.12 86 pGCA_001587035_00062 - 328 7.2 6.9 12.9 1 3 0.25 6.5e+02 0.7 0.8 7 38 112 143 102 186 0.61 Proteins of 100 residues with WXG WXG100 PF06013.12 86 pGCA_001587035_00062 - 328 7.2 6.9 12.9 2 3 0.00039 1 9.7 0.7 48 85 226 263 223 264 0.86 Proteins of 100 residues with WXG WXG100 PF06013.12 86 pGCA_001587035_00062 - 328 7.2 6.9 12.9 3 3 0.04 1e+02 3.2 0.3 27 65 275 313 266 322 0.87 Proteins of 100 residues with WXG IF2_N PF04760.15 54 pGCA_001587035_00063 - 91 6.5e-05 22.7 5.8 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pGCA_001587035_00063 - 91 6.5e-05 22.7 5.8 2 2 0.0075 34 4.4 0.1 31 53 57 79 56 80 0.87 Translation initiation factor IF-2, N-terminal region HTH_16 PF12645.7 65 pGCA_001587035_00063 - 91 0.013 15.5 1.9 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pGCA_001587035_00063 - 91 0.013 15.5 1.9 2 2 2.8e-05 0.13 12.4 0.3 15 54 44 82 40 85 0.87 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pGCA_001587035_00063 - 91 0.029 15.1 0.5 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pGCA_001587035_00063 - 91 0.029 15.1 0.5 2 2 0.014 63 4.4 0.0 29 51 69 91 64 91 0.83 Rv0623-like transcription factor FliG_N PF14842.6 104 pGCA_001587035_00063 - 91 0.039 14.5 1.0 1 1 1e-05 0.046 14.3 1.0 21 86 9 80 1 85 0.89 FliG N-terminal domain SSB PF00436.25 104 pGCA_001587035_00064 - 141 2.5e-24 85.3 0.1 1 1 1.8e-28 3.2e-24 85.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family FapA PF03961.13 454 pGCA_001587035_00065 - 221 0.072 11.7 13.7 1 2 2.2e-06 0.0066 15.1 7.2 332 412 3 86 1 142 0.88 Flagellar Assembly Protein A FapA PF03961.13 454 pGCA_001587035_00065 - 221 0.072 11.7 13.7 2 2 0.057 1.7e+02 0.6 0.9 293 363 139 215 121 221 0.63 Flagellar Assembly Protein A DUF3251 PF11622.8 165 pGCA_001587035_00065 - 221 0.085 12.5 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) Fib_alpha PF08702.10 143 pGCA_001587035_00065 - 221 1.1 9.4 11.4 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_001587035_00065 - 221 1.1 9.4 11.4 2 3 0.38 1.1e+03 -0.3 0.0 110 126 136 152 113 164 0.63 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_001587035_00065 - 221 1.1 9.4 11.4 3 3 0.58 1.7e+03 -0.9 0.2 36 52 193 209 177 220 0.44 Fibrinogen alpha/beta chain family DUF5082 PF16888.5 123 pGCA_001587035_00065 - 221 1.8 8.9 13.9 1 2 0.00034 1 9.7 0.6 92 122 5 35 3 36 0.82 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pGCA_001587035_00065 - 221 1.8 8.9 13.9 2 2 0.0058 17 5.7 2.9 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pGCA_001587035_00065 - 221 4.4 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pGCA_001587035_00065 - 221 4.4 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pGCA_001587035_00065 - 221 4.4 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) Ax_dynein_light PF10211.9 187 pGCA_001587035_00065 - 221 4.5 7.2 15.1 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pGCA_001587035_00065 - 221 4.5 7.2 15.1 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pGCA_001587035_00065 - 221 4.5 7.2 15.1 3 3 0.18 5.3e+02 0.4 0.7 110 141 178 214 173 221 0.41 Axonemal dynein light chain Phage_pRha PF09669.10 88 pGCA_001587035_00066 - 188 2e-29 102.0 0.1 1 1 1.9e-33 3.3e-29 101.3 0.1 2 88 24 122 23 122 0.83 Phage regulatory protein Rha (Phage_pRha) CagE_TrbE_VirB PF03135.14 206 pGCA_001587035_00067 - 922 9.3e-49 166.3 0.3 1 1 5.2e-52 2.3e-48 165.0 0.3 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pGCA_001587035_00067 - 922 7e-21 74.3 1.2 1 1 2.8e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 pGCA_001587035_00067 - 922 1.5e-07 30.7 0.8 1 1 7.7e-11 3.5e-07 29.5 0.8 23 318 547 843 533 856 0.73 AAA-like domain DUF87 PF01935.17 227 pGCA_001587035_00067 - 922 0.039 14.0 5.4 1 5 0.57 2.6e+03 -1.7 0.2 134 201 188 252 129 286 0.48 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_001587035_00067 - 922 0.039 14.0 5.4 2 5 0.81 3.6e+03 -2.2 0.0 87 124 263 298 237 301 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_001587035_00067 - 922 0.039 14.0 5.4 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_001587035_00067 - 922 0.039 14.0 5.4 4 5 0.0066 30 4.6 0.2 100 178 638 716 630 731 0.75 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_001587035_00067 - 922 0.039 14.0 5.4 5 5 0.31 1.4e+03 -0.8 0.1 43 108 751 811 747 916 0.59 Helicase HerA, central domain TrbC PF04956.13 99 pGCA_001587035_00068 - 87 1.4e-15 57.3 6.9 1 1 1.8e-19 1.6e-15 57.1 6.9 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pGCA_001587035_00068 - 87 0.041 13.8 3.5 1 1 5.4e-06 0.049 13.5 3.3 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pGCA_001587035_00070 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pGCA_001587035_00070 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pGCA_001587035_00070 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase Resolvase PF00239.21 146 pGCA_001587035_00071 - 204 9.1e-32 110.2 0.6 1 1 2.7e-35 1.2e-31 109.8 0.6 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pGCA_001587035_00071 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_001587035_00071 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_001587035_00071 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pGCA_001587035_00071 - 204 0.065 13.3 4.7 1 3 0.00015 0.68 10.0 0.7 27 59 12 44 6 45 0.87 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_001587035_00071 - 204 0.065 13.3 4.7 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_001587035_00071 - 204 0.065 13.3 4.7 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pGCA_001587035_00071 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_001587035_00071 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_001587035_00071 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat AAA_25 PF13481.6 194 pGCA_001587035_00072 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pGCA_001587035_00072 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_001587035_00072 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_001587035_00072 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_001587035_00072 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pGCA_001587035_00072 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_001587035_00072 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pGCA_001587035_00072 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pGCA_001587035_00072 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pGCA_001587035_00072 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pGCA_001587035_00072 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pGCA_001587035_00072 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain HicA_toxin PF07927.12 58 pGCA_001587035_00073 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pGCA_001587035_00074 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 pGCA_001587035_00075 - 85 0.0043 17.1 1.7 1 1 6e-07 0.0054 16.8 1.7 34 88 20 76 18 80 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2633 PF11119.8 57 pGCA_001587035_00075 - 85 0.93 9.4 4.2 1 1 0.00019 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) DUF4223 PF13978.6 54 pGCA_001587035_00076 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pGCA_001587035_00076 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pGCA_001587035_00076 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 pGCA_001587035_00077 - 408 2.1e-08 34.4 0.0 1 1 7.1e-12 4.2e-08 33.4 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pGCA_001587035_00077 - 408 0.088 12.8 0.8 1 2 6.1e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Paz_1 PF18349.1 93 pGCA_001587035_00077 - 408 0.088 12.8 0.8 2 2 0.47 2.8e+03 -1.7 0.0 63 90 257 283 221 285 0.49 PAZ domain 5_3_exonuc PF01367.20 97 pGCA_001587035_00077 - 408 0.17 12.5 4.7 1 2 0.019 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_001587035_00077 - 408 0.17 12.5 4.7 2 2 0.00015 0.89 10.2 0.4 15 79 321 381 320 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF2400 PF09674.10 227 pGCA_001587035_00078 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pGCA_001587035_00078 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Sds3 PF08598.11 218 pGCA_001587035_00080 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pGCA_001587035_00080 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pGCA_001587035_00080 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pGCA_001587035_00080 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pGCA_001587035_00080 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 pGCA_001587035_00081 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_001587035_00081 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_001587035_00081 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pGCA_001587035_00081 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pGCA_001587035_00081 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_001587035_00081 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_001587035_00081 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pGCA_001587035_00081 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pGCA_001587035_00081 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 pGCA_001587035_00081 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pGCA_001587035_00081 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain Relaxase PF03432.14 242 pGCA_001587035_00082 - 462 5.1e-10 39.4 7.2 1 2 2.9e-14 5.1e-10 39.4 7.2 48 228 119 296 70 309 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_001587035_00082 - 462 5.1e-10 39.4 7.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_19 PF12844.7 65 pGCA_001587035_00083 - 314 1e-05 25.5 0.2 1 2 0.0055 7.1 6.7 0.0 11 31 9 29 1 42 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 pGCA_001587035_00083 - 314 1e-05 25.5 0.2 2 2 8.1e-06 0.01 15.8 0.0 27 64 116 152 91 153 0.90 Helix-turn-helix domain HTH_3 PF01381.22 55 pGCA_001587035_00083 - 314 5.4e-05 23.2 0.0 1 2 3.6e-07 0.00046 20.2 0.0 2 29 3 30 2 30 0.90 Helix-turn-helix HTH_3 PF01381.22 55 pGCA_001587035_00083 - 314 5.4e-05 23.2 0.0 2 2 0.67 8.6e+02 0.1 0.0 26 55 118 147 107 147 0.85 Helix-turn-helix Phage_CI_repr PF07022.13 65 pGCA_001587035_00083 - 314 0.0011 19.0 0.0 1 2 6.6e-05 0.084 13.0 0.0 11 49 10 47 2 50 0.77 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 pGCA_001587035_00083 - 314 0.0011 19.0 0.0 2 2 0.064 82 3.4 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 pGCA_001587035_00083 - 314 0.0078 15.7 0.0 1 2 8.2e-05 0.11 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pGCA_001587035_00083 - 314 0.0078 15.7 0.0 2 2 0.29 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 pGCA_001587035_00083 - 314 0.015 15.4 0.0 1 1 2.9e-05 0.037 14.2 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 pGCA_001587035_00083 - 314 0.016 15.0 0.1 1 2 5.1e-05 0.065 13.1 0.0 4 36 5 37 2 49 0.75 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 pGCA_001587035_00083 - 314 0.016 15.0 0.1 2 2 2.5 3.2e+03 -1.9 0.1 38 47 290 299 289 300 0.87 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 pGCA_001587035_00083 - 314 0.019 14.7 0.0 1 1 3.5e-05 0.045 13.6 0.0 16 37 7 30 1 36 0.86 Homeodomain-like domain Imm3 PF14425.6 119 pGCA_001587035_00083 - 314 0.042 13.9 0.1 1 1 6.8e-05 0.087 12.9 0.1 33 113 26 104 2 109 0.75 Immunity protein Imm3 HTH_26 PF13443.6 63 pGCA_001587035_00083 - 314 0.071 13.6 0.0 1 1 0.00012 0.16 12.4 0.0 3 30 3 30 1 38 0.88 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.7 51 pGCA_001587035_00083 - 314 0.097 12.9 0.0 1 2 0.13 1.7e+02 2.5 0.0 5 16 3 14 2 16 0.90 Helix-turn-helix domain HTH_17 PF12728.7 51 pGCA_001587035_00083 - 314 0.097 12.9 0.0 2 2 0.0011 1.4 9.2 0.0 5 27 14 36 11 42 0.83 Helix-turn-helix domain HTH_31 PF13560.6 64 pGCA_001587035_00083 - 314 0.1 12.9 0.0 1 1 0.00016 0.2 12.0 0.0 12 33 8 29 2 40 0.88 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 pGCA_001587035_00083 - 314 0.13 11.9 0.0 1 1 0.00027 0.35 10.6 0.0 25 46 9 30 5 30 0.93 Sigma-70, region 4 Phage_AlpA PF05930.12 51 pGCA_001587035_00083 - 314 0.14 12.0 0.0 1 2 0.015 20 5.1 0.0 6 19 2 15 1 18 0.89 Prophage CP4-57 regulatory protein (AlpA) Phage_AlpA PF05930.12 51 pGCA_001587035_00083 - 314 0.14 12.0 0.0 2 2 0.0031 4 7.3 0.0 5 23 12 30 11 35 0.88 Prophage CP4-57 regulatory protein (AlpA) HTH_Mga PF08280.11 60 pGCA_001587035_00083 - 314 0.15 12.1 1.8 1 3 0.0044 5.6 7.1 0.1 21 37 11 27 4 30 0.89 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_001587035_00083 - 314 0.15 12.1 1.8 2 3 0.065 83 3.3 0.0 25 59 41 75 32 76 0.80 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_001587035_00083 - 314 0.15 12.1 1.8 3 3 9 1.2e+04 -3.5 0.0 46 50 94 98 86 105 0.47 M protein trans-acting positive regulator (MGA) HTH domain SNF2_N PF00176.23 350 pGCA_001587035_00084 - 1931 1.4e-16 60.1 0.8 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1016 1272 934 1313 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_001587035_00084 - 1931 1.4e-16 60.1 0.8 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_001587035_00084 - 1931 1.4e-16 60.1 0.8 3 3 1.1 3.9e+03 -3.8 0.0 172 199 1878 1906 1859 1914 0.75 SNF2 family N-terminal domain ResIII PF04851.15 171 pGCA_001587035_00084 - 1931 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 648 691 638 783 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_001587035_00084 - 1931 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 999 1211 998 1242 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_001587035_00084 - 1931 4.9e-08 33.2 8.3 3 3 0.34 1.2e+03 -0.7 5.2 33 121 1797 1903 1746 1928 0.65 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pGCA_001587035_00084 - 1931 9.4e-07 29.2 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1076 1104 1028 1108 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pGCA_001587035_00084 - 1931 9.4e-07 29.2 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pGCA_001587035_00084 - 1931 1.3e-05 25.0 2.0 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1003 1108 1002 1204 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pGCA_001587035_00084 - 1931 1.3e-05 25.0 2.0 2 2 0.15 5.5e+02 0.2 0.1 120 143 1883 1908 1832 1928 0.67 DEAD/DEAH box helicase Eco57I PF07669.11 106 pGCA_001587035_00084 - 1931 3e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 371 471 369 474 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pGCA_001587035_00084 - 1931 3e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 660 699 644 718 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 pGCA_001587035_00085 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 pGCA_001587035_00086 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 pGCA_001587035_00086 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pGCA_001587035_00086 - 186 0.0021 18.1 0.9 1 1 2.9e-06 0.017 15.2 0.9 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_001587035_00086 - 186 0.014 14.8 0.0 1 1 3.2e-06 0.019 14.4 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase NnrS PF05940.12 366 pGCA_001587035_00088 - 124 0.023 14.1 9.9 1 1 1.3e-05 0.028 13.8 9.9 75 171 8 110 3 116 0.73 NnrS protein DUF2070 PF09843.9 564 pGCA_001587035_00088 - 124 0.054 11.8 13.4 1 1 2.8e-05 0.063 11.6 13.4 80 176 9 115 3 123 0.72 Predicted membrane protein (DUF2070) DUF4199 PF13858.6 168 pGCA_001587035_00088 - 124 0.15 12.4 19.9 1 2 0.0025 5.6 7.3 8.2 6 59 11 62 7 66 0.60 Protein of unknown function (DUF4199) DUF4199 PF13858.6 168 pGCA_001587035_00088 - 124 0.15 12.4 19.9 2 2 0.00024 0.53 10.7 4.4 9 60 73 120 64 124 0.49 Protein of unknown function (DUF4199) Glucos_trans_II PF14264.6 297 pGCA_001587035_00088 - 124 0.51 9.7 27.0 1 2 0.00022 0.49 9.7 7.9 226 278 5 53 2 59 0.81 Glucosyl transferase GtrII Glucos_trans_II PF14264.6 297 pGCA_001587035_00088 - 124 0.51 9.7 27.0 2 2 0.007 16 4.8 11.0 138 187 67 113 58 123 0.55 Glucosyl transferase GtrII DUF5385 PF17359.2 220 pGCA_001587035_00088 - 124 0.52 9.8 9.3 1 2 0.09 2e+02 1.4 0.6 5 30 35 61 32 67 0.59 Family of unknown function (DUF5385) DUF5385 PF17359.2 220 pGCA_001587035_00088 - 124 0.52 9.8 9.3 2 2 4.4e-05 0.099 12.2 2.6 2 31 91 122 90 124 0.50 Family of unknown function (DUF5385) NVEALA PF14055.6 64 pGCA_001587035_00088 - 124 4.1 7.4 6.4 1 3 1 2.3e+03 -1.4 0.1 15 15 43 43 30 67 0.50 NVEALA protein NVEALA PF14055.6 64 pGCA_001587035_00088 - 124 4.1 7.4 6.4 2 3 0.04 89 3.2 0.5 9 35 72 98 62 99 0.79 NVEALA protein NVEALA PF14055.6 64 pGCA_001587035_00088 - 124 4.1 7.4 6.4 3 3 0.0019 4.2 7.4 0.2 6 29 99 122 95 124 0.86 NVEALA protein TssN PF17555.2 275 pGCA_001587035_00088 - 124 4.7 6.5 20.7 1 1 0.0026 5.9 6.2 20.7 38 142 9 116 2 122 0.71 Type VI secretion system, TssN DUF2663 PF10864.8 127 pGCA_001587035_00088 - 124 6.7 7.1 10.9 1 2 0.1 2.3e+02 2.1 1.5 51 78 30 57 1 64 0.47 Protein of unknown function (DUF2663) DUF2663 PF10864.8 127 pGCA_001587035_00088 - 124 6.7 7.1 10.9 2 2 0.016 36 4.8 8.5 17 83 56 121 27 123 0.75 Protein of unknown function (DUF2663) Lipase_3 PF01764.25 142 pGCA_001587035_00089 - 531 3.6e-08 33.4 0.0 1 1 7.7e-11 1.4e-07 31.5 0.0 49 114 175 241 139 253 0.73 Lipase (class 3) DUF2974 PF11187.8 224 pGCA_001587035_00089 - 531 2.8e-07 30.3 0.0 1 1 3.8e-10 6.7e-07 29.1 0.0 7 123 100 233 95 271 0.73 Protein of unknown function (DUF2974) PGAP1 PF07819.13 231 pGCA_001587035_00089 - 531 2.7e-05 24.0 0.3 1 2 1.9e-07 0.00034 20.4 0.0 48 114 130 213 91 232 0.72 PGAP1-like protein PGAP1 PF07819.13 231 pGCA_001587035_00089 - 531 2.7e-05 24.0 0.3 2 2 0.14 2.5e+02 1.2 0.1 44 83 306 346 271 361 0.77 PGAP1-like protein DUF676 PF05057.14 219 pGCA_001587035_00089 - 531 5.3e-05 22.8 0.0 1 1 7.2e-08 0.00013 21.6 0.0 66 105 177 216 168 234 0.71 Putative serine esterase (DUF676) LIDHydrolase PF10230.9 266 pGCA_001587035_00089 - 531 0.00045 19.9 0.1 1 1 5.2e-07 0.00093 18.8 0.1 66 101 168 206 133 217 0.71 Lipid-droplet associated hydrolase Abhydrolase_6 PF12697.7 220 pGCA_001587035_00089 - 531 0.0017 19.0 0.0 1 1 1.3e-06 0.0024 18.5 0.0 51 87 175 215 140 258 0.74 Alpha/beta hydrolase family UPF0227 PF05728.12 187 pGCA_001587035_00089 - 531 0.0021 18.1 0.9 1 3 5.7 1e+04 -3.8 0.1 123 146 54 77 36 87 0.53 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pGCA_001587035_00089 - 531 0.0021 18.1 0.9 2 3 8e-06 0.014 15.3 0.0 40 80 172 211 144 227 0.70 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pGCA_001587035_00089 - 531 0.0021 18.1 0.9 3 3 0.51 9.2e+02 -0.4 0.0 115 145 411 442 388 459 0.73 Uncharacterised protein family (UPF0227) DUF4450 PF14614.6 217 pGCA_001587035_00089 - 531 0.016 14.8 0.1 1 1 2.7e-05 0.049 13.2 0.1 6 48 466 508 463 515 0.94 Domain of unknown function (DUF4450) DUF1257 PF06868.11 104 pGCA_001587035_00089 - 531 0.24 11.7 2.3 1 3 0.0099 18 5.7 0.1 5 34 33 64 30 81 0.76 Protein of unknown function (DUF1257) DUF1257 PF06868.11 104 pGCA_001587035_00089 - 531 0.24 11.7 2.3 2 3 0.021 38 4.6 0.1 29 69 415 455 401 468 0.84 Protein of unknown function (DUF1257) DUF1257 PF06868.11 104 pGCA_001587035_00089 - 531 0.24 11.7 2.3 3 3 7.7 1.4e+04 -3.6 0.0 67 78 484 495 477 503 0.65 Protein of unknown function (DUF1257) SBDS PF01172.18 88 pGCA_001587035_00089 - 531 0.79 9.8 5.3 1 2 1 1.9e+03 -1.0 0.1 20 41 43 63 27 110 0.69 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS PF01172.18 88 pGCA_001587035_00089 - 531 0.79 9.8 5.3 2 2 0.00046 0.83 9.8 1.4 8 31 427 451 420 506 0.79 Shwachman-Bodian-Diamond syndrome (SBDS) protein SseC PF04888.12 317 pGCA_001587035_00092 - 1305 0.0012 18.5 0.2 1 1 1.1e-06 0.0032 17.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family APOBEC_C PF05240.14 78 pGCA_001587035_00092 - 1305 0.018 15.0 0.5 1 1 3e-05 0.091 12.7 0.5 26 76 766 819 755 821 0.86 APOBEC-like C-terminal domain ThrE PF06738.12 241 pGCA_001587035_00092 - 1305 0.019 14.3 0.8 1 1 1.7e-05 0.051 12.9 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter Hormone_2 PF00123.20 28 pGCA_001587035_00092 - 1305 0.033 14.1 0.1 1 1 5.2e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone PTS_EIIC_2 PF13303.6 328 pGCA_001587035_00092 - 1305 0.037 13.1 1.0 1 1 2.1e-05 0.064 12.3 1.0 21 107 208 297 204 316 0.82 Phosphotransferase system, EIIC TPR_11 PF13414.6 42 pGCA_001587035_00092 - 1305 0.064 12.9 0.3 1 1 5.9e-05 0.18 11.5 0.3 13 33 1193 1213 1192 1214 0.96 TPR repeat Glyco_tranf_2_5 PF13712.6 210 pGCA_001587035_00094 - 267 0.00068 19.4 3.8 1 1 7.1e-08 0.0013 18.5 3.8 4 77 114 190 111 198 0.85 Glycosyltransferase like family TraG_N PF07916.11 467 pGCA_001587035_00095 - 753 3.3e-42 144.9 22.9 1 2 3.7e-46 3.3e-42 144.9 22.9 12 465 2 449 1 455 0.80 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pGCA_001587035_00095 - 753 3.3e-42 144.9 22.9 2 2 0.31 2.7e+03 -3.2 4.3 210 287 611 695 581 735 0.49 TraG-like protein, N-terminal region CHMI PF02962.15 124 pGCA_001587035_00095 - 753 0.017 15.5 0.1 1 3 0.81 7.3e+03 -2.7 0.0 98 120 21 43 5 51 0.68 5-carboxymethyl-2-hydroxymuconate isomerase CHMI PF02962.15 124 pGCA_001587035_00095 - 753 0.017 15.5 0.1 2 3 1.2e-05 0.11 12.9 0.0 47 120 69 144 61 148 0.78 5-carboxymethyl-2-hydroxymuconate isomerase CHMI PF02962.15 124 pGCA_001587035_00095 - 753 0.017 15.5 0.1 3 3 0.67 6e+03 -2.5 0.0 45 97 546 600 538 619 0.62 5-carboxymethyl-2-hydroxymuconate isomerase YafQ_toxin PF15738.5 88 pGCA_001587035_00098 - 93 2.5e-24 85.4 5.0 1 1 6.3e-28 2.8e-24 85.2 5.0 1 88 4 91 4 91 0.93 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 pGCA_001587035_00098 - 93 9.5e-06 26.1 0.3 1 1 2.7e-09 1.2e-05 25.8 0.3 3 89 8 89 6 90 0.79 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 87 pGCA_001587035_00098 - 93 0.00012 22.0 2.5 1 1 3.3e-08 0.00015 21.7 2.5 3 84 8 91 6 93 0.81 ParE-like toxin of type II bacterial toxin-antitoxin system BTHB PF18410.1 72 pGCA_001587035_00098 - 93 0.086 12.7 1.5 1 3 0.04 1.8e+02 2.0 0.1 53 66 11 24 5 30 0.79 Basic tilted helix bundle domain BTHB PF18410.1 72 pGCA_001587035_00098 - 93 0.086 12.7 1.5 2 3 0.16 7.4e+02 0.1 0.0 45 61 31 47 22 48 0.82 Basic tilted helix bundle domain BTHB PF18410.1 72 pGCA_001587035_00098 - 93 0.086 12.7 1.5 3 3 0.0002 0.87 9.4 0.1 34 63 45 74 41 80 0.92 Basic tilted helix bundle domain HicB_lk_antitox PF15919.5 123 pGCA_001587035_00100 - 119 8.3e-09 35.6 0.3 1 2 4.2e-06 0.038 14.1 0.0 1 60 12 74 12 79 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 pGCA_001587035_00100 - 119 8.3e-09 35.6 0.3 2 2 3.9e-08 0.00035 20.7 0.1 88 123 77 108 72 108 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 pGCA_001587035_00100 - 119 0.15 11.9 0.0 1 1 3.3e-05 0.29 11.0 0.0 3 35 80 112 79 115 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HicA_toxin PF07927.12 58 pGCA_001587035_00101 - 75 1.7e-06 28.0 0.0 1 1 1.4e-10 2.5e-06 27.4 0.0 5 55 24 71 20 72 0.88 HicA toxin of bacterial toxin-antitoxin, Fic PF02661.18 97 pGCA_001587035_00102 - 133 4.4e-05 24.3 0.0 1 1 8.9e-09 8e-05 23.5 0.0 23 97 6 76 2 76 0.72 Fic/DOC family Como_LCP PF02247.16 373 pGCA_001587035_00102 - 133 0.056 12.0 0.1 1 1 7.2e-06 0.065 11.8 0.1 238 302 51 116 35 129 0.88 Large coat protein DHHA1 PF02272.19 138 pGCA_001587035_00103 - 189 0.18 12.2 1.6 1 1 2e-05 0.37 11.2 1.6 15 92 36 117 22 129 0.83 DHHA1 domain DUF3825 PF12873.7 239 pGCA_001587035_00104 - 335 2.2e-28 99.3 0.4 1 1 1.9e-32 3.4e-28 98.7 0.4 1 239 106 330 106 330 0.86 Domain of unknown function (DUF3825) DUF447 PF04289.12 176 pGCA_001587035_00105 - 130 0.029 14.1 0.1 1 1 7.7e-06 0.046 13.5 0.1 42 111 21 87 19 96 0.85 Protein of unknown function (DUF447) WH1 PF00568.23 111 pGCA_001587035_00105 - 130 0.04 13.9 0.3 1 1 1e-05 0.063 13.2 0.3 9 80 28 98 20 106 0.84 WH1 domain Cob_adeno_trans PF01923.18 164 pGCA_001587035_00105 - 130 0.045 13.9 0.1 1 1 9.9e-06 0.059 13.5 0.1 25 104 37 127 32 130 0.79 Cobalamin adenosyltransferase IMS_C PF11799.8 118 pGCA_001587035_00107 - 127 0.00012 22.7 0.0 1 1 2.2e-08 0.00019 22.1 0.0 59 111 11 62 3 67 0.88 impB/mucB/samB family C-terminal domain Patched PF02460.18 811 pGCA_001587035_00107 - 127 0.024 12.8 0.2 1 1 3.1e-06 0.027 12.5 0.2 3 75 52 122 50 126 0.91 Patched family IMS PF00817.20 150 pGCA_001587035_00109 - 220 1.5e-25 89.9 0.2 1 1 2.2e-29 4e-25 88.6 0.2 1 149 10 192 10 193 0.86 impB/mucB/samB family CooC_C PF15976.5 93 pGCA_001587035_00110 - 53 0.015 15.3 0.0 1 1 1.8e-06 0.016 15.2 0.0 12 46 5 39 1 43 0.89 CS1-pili formation C-terminal PemK_toxin PF02452.17 111 pGCA_001587035_00110 - 53 0.04 14.3 0.0 1 1 5.3e-06 0.048 14.1 0.0 81 108 2 29 1 32 0.91 PemK-like, MazF-like toxin of type II toxin-antitoxin system HTH_3 PF01381.22 55 pGCA_001587035_00111 - 44 3.7e-07 30.1 0.0 1 1 4.6e-10 4.1e-07 30.0 0.0 1 36 9 43 9 44 0.94 Helix-turn-helix HTH_26 PF13443.6 63 pGCA_001587035_00111 - 44 0.00017 21.9 0.0 1 1 2.1e-07 0.00019 21.8 0.0 2 35 9 42 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 pGCA_001587035_00111 - 44 0.00074 19.0 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 65 pGCA_001587035_00111 - 44 0.0012 18.7 0.0 1 1 1.4e-06 0.0013 18.6 0.0 1 32 9 41 9 44 0.81 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_19 PF12844.7 65 pGCA_001587035_00111 - 44 0.0012 18.8 0.0 1 1 1.5e-06 0.0013 18.7 0.0 4 37 9 42 7 44 0.90 Helix-turn-helix domain HTH_23 PF13384.6 50 pGCA_001587035_00111 - 44 0.002 17.8 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 pGCA_001587035_00111 - 44 0.0038 17.3 0.3 1 1 6e-06 0.0054 16.8 0.3 25 46 1 22 1 40 0.90 ENT domain HTH_31 PF13560.6 64 pGCA_001587035_00111 - 44 0.0048 17.2 0.0 1 1 5.8e-06 0.0052 17.1 0.0 12 40 15 43 9 44 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 pGCA_001587035_00111 - 44 0.0094 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 pGCA_001587035_00111 - 44 0.0099 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 pGCA_001587035_00111 - 44 0.013 14.8 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 pGCA_001587035_00111 - 44 0.02 14.8 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 pGCA_001587035_00111 - 44 0.021 14.6 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain Phage_CI_repr PF07022.13 65 pGCA_001587035_00111 - 44 0.028 14.5 0.0 1 1 3.5e-05 0.032 14.3 0.0 3 33 9 38 7 42 0.84 Bacteriophage CI repressor helix-turn-helix domain HTH_AsnC-type PF13404.6 42 pGCA_001587035_00111 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 51 pGCA_001587035_00111 - 44 0.031 14.5 0.0 1 2 0.02 18 5.6 0.0 4 16 9 21 9 25 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 pGCA_001587035_00111 - 44 0.031 14.5 0.0 2 2 0.0034 3 8.1 0.0 6 28 22 43 19 44 0.83 Helix-turn-helix domain Sigma70_r4 PF04545.16 50 pGCA_001587035_00111 - 44 0.035 13.6 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 MerR PF00376.23 38 pGCA_001587035_00111 - 44 0.08 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 pGCA_001587035_00111 - 44 0.08 12.7 0.0 2 2 0.0096 8.6 6.2 0.0 4 18 22 36 21 43 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 pGCA_001587035_00111 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 pGCA_001587035_00111 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain DUF5601 PF18151.1 65 pGCA_001587035_00113 - 133 0.0084 16.4 0.4 1 1 1.8e-06 0.016 15.5 0.4 12 55 44 89 29 90 0.86 Domain of unknown function (DUF5601) IFP_35_N PF07334.13 76 pGCA_001587035_00113 - 133 0.14 12.2 4.9 1 3 0.0049 44 4.2 0.0 57 72 5 20 3 23 0.89 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 pGCA_001587035_00113 - 133 0.14 12.2 4.9 2 3 0.15 1.3e+03 -0.5 0.1 1 20 42 61 29 73 0.74 Interferon-induced 35 kDa protein (IFP 35) N-terminus IFP_35_N PF07334.13 76 pGCA_001587035_00113 - 133 0.14 12.2 4.9 3 3 0.00022 2 8.5 0.4 6 28 97 119 90 126 0.88 Interferon-induced 35 kDa protein (IFP 35) N-terminus HSBP1 PF06825.12 51 pGCA_001587035_00115 - 126 0.025 14.4 0.1 1 1 9.8e-06 0.044 13.6 0.1 14 43 65 94 61 98 0.87 Heat shock factor binding protein 1 CCDC-167 PF15188.6 84 pGCA_001587035_00115 - 126 0.026 14.9 0.3 1 1 8.7e-06 0.039 14.3 0.3 36 79 48 108 20 110 0.72 Coiled-coil domain-containing protein 167 DUF3450 PF11932.8 241 pGCA_001587035_00115 - 126 0.11 11.8 0.2 1 1 2.9e-05 0.13 11.6 0.2 36 105 35 104 19 112 0.82 Protein of unknown function (DUF3450) DUF4164 PF13747.6 89 pGCA_001587035_00115 - 126 0.11 12.8 0.3 1 1 5.3e-05 0.24 11.7 0.1 13 42 65 95 60 98 0.89 Domain of unknown function (DUF4164) Phage_NinH PF06322.11 60 pGCA_001587035_00116 - 47 0.1 12.5 0.2 1 1 7e-06 0.13 12.2 0.2 36 56 26 46 21 47 0.90 Phage NinH protein WGR PF05406.15 80 pGCA_001587035_00120 - 75 4.2e-07 29.9 0.3 1 1 5.5e-11 4.9e-07 29.7 0.3 3 73 4 74 2 75 0.86 WGR domain Cadherin_pro PF08758.11 90 pGCA_001587035_00120 - 75 0.035 14.3 0.0 1 1 4.8e-06 0.043 14.0 0.0 15 44 26 55 12 62 0.80 Cadherin prodomain like FlaC_arch PF05377.11 55 pGCA_001587035_00121 - 76 0.0068 16.8 1.5 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pGCA_001587035_00121 - 76 0.0068 16.8 1.5 2 2 3.8e-07 0.0068 16.8 1.5 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) Phage_integrase PF00589.22 172 pGCA_001587035_00122 - 312 4.9e-24 85.0 0.5 1 1 3.2e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 pGCA_001587035_00122 - 312 1.2e-05 25.5 4.2 1 2 1.5e-08 3.9e-05 23.9 1.8 1 79 16 99 16 102 0.92 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pGCA_001587035_00122 - 312 1.2e-05 25.5 4.2 2 2 4 1e+04 -3.1 0.0 38 54 125 141 115 151 0.53 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 pGCA_001587035_00122 - 312 0.00017 21.8 4.6 1 3 6.8e-08 0.00017 21.8 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pGCA_001587035_00122 - 312 0.00017 21.8 4.6 2 3 1.1 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pGCA_001587035_00122 - 312 0.00017 21.8 4.6 3 3 2.1 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 85 pGCA_001587035_00122 - 312 0.0026 18.2 8.9 1 3 0.00099 2.5 8.6 0.3 35 80 5 49 2 53 0.86 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pGCA_001587035_00122 - 312 0.0026 18.2 8.9 2 3 3.4e-06 0.0086 16.5 5.3 2 79 16 101 15 104 0.90 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pGCA_001587035_00122 - 312 0.0026 18.2 8.9 3 3 2 5.2e+03 -2.0 0.1 8 22 285 299 281 302 0.77 Phage integrase, N-terminal SAM-like domain Phyto-Amp PF15438.6 195 pGCA_001587035_00122 - 312 0.0092 15.8 0.3 1 1 6.5e-06 0.017 15.0 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma Phage_int_SAM_3 PF14659.6 58 pGCA_001587035_00122 - 312 0.027 14.7 3.2 1 1 4.2e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain YbjN PF10722.9 127 pGCA_001587035_00122 - 312 0.029 14.4 0.3 1 2 0.00055 1.4 9.0 0.1 38 77 96 135 91 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 pGCA_001587035_00122 - 312 0.029 14.4 0.3 2 2 0.047 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator IMS PF00817.20 150 pGCA_001717605_00001 - 126 1.1e-06 28.7 0.1 1 1 1.7e-10 3e-06 27.3 0.1 1 80 10 122 10 126 0.71 impB/mucB/samB family DUF4368 PF14287.6 67 pGCA_001717605_00002 - 628 3.6e-23 81.6 2.1 1 1 3.9e-26 1.2e-22 80.0 2.1 2 66 472 537 471 538 0.92 Domain of unknown function (DUF4368) Recombinase PF07508.13 104 pGCA_001717605_00002 - 628 3.6e-22 78.7 0.7 1 2 2.6 7.8e+03 -2.7 0.0 8 32 133 157 132 173 0.80 Recombinase Recombinase PF07508.13 104 pGCA_001717605_00002 - 628 3.6e-22 78.7 0.7 2 2 4.6e-25 1.4e-21 76.9 0.2 1 101 183 303 183 305 0.96 Recombinase Resolvase PF00239.21 146 pGCA_001717605_00002 - 628 5.2e-21 75.3 0.1 1 3 1.7e-24 5.2e-21 75.3 0.1 2 146 9 161 8 161 0.90 Resolvase, N terminal domain Resolvase PF00239.21 146 pGCA_001717605_00002 - 628 5.2e-21 75.3 0.1 2 3 0.18 5.4e+02 0.6 2.3 21 62 380 422 375 521 0.78 Resolvase, N terminal domain Resolvase PF00239.21 146 pGCA_001717605_00002 - 628 5.2e-21 75.3 0.1 3 3 1.2 3.6e+03 -2.1 1.6 123 142 579 598 549 602 0.65 Resolvase, N terminal domain Zn_ribbon_recom PF13408.6 58 pGCA_001717605_00002 - 628 1.4e-12 47.9 2.6 1 1 1.5e-15 4.3e-12 46.3 2.6 1 58 318 380 318 380 0.84 Recombinase zinc beta ribbon domain Xrn1_D3 PF18194.1 71 pGCA_001717605_00002 - 628 0.14 12.2 0.7 1 2 0.00013 0.38 10.9 0.1 2 28 376 402 375 412 0.91 Exoribonuclease 1 Domain-3 Xrn1_D3 PF18194.1 71 pGCA_001717605_00002 - 628 0.14 12.2 0.7 2 2 4 1.2e+04 -3.5 0.1 33 50 464 481 458 484 0.74 Exoribonuclease 1 Domain-3 Snapin_Pallidin PF14712.6 90 pGCA_001717605_00002 - 628 1.2 9.6 6.0 1 3 6 1.8e+04 -3.8 0.0 33 51 29 47 24 54 0.68 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 pGCA_001717605_00002 - 628 1.2 9.6 6.0 2 3 0.0043 13 6.3 0.2 46 78 397 429 383 435 0.78 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 pGCA_001717605_00002 - 628 1.2 9.6 6.0 3 3 0.0082 24 5.4 0.2 26 56 455 486 452 504 0.82 Snapin/Pallidin AAA_18 PF13238.6 130 pGCA_001717605_00003 - 181 1.4e-14 54.8 0.0 1 1 4.6e-17 1.8e-14 54.4 0.0 1 122 7 133 7 141 0.78 AAA domain AAA_33 PF13671.6 143 pGCA_001717605_00003 - 181 2.8e-11 43.8 0.0 1 1 8.7e-14 3.5e-11 43.5 0.0 2 136 7 144 6 147 0.80 AAA domain CPT PF07931.12 174 pGCA_001717605_00003 - 181 1.9e-10 40.9 0.0 1 1 9.1e-13 3.6e-10 39.9 0.0 1 172 4 172 4 174 0.80 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 199 pGCA_001717605_00003 - 181 1.5e-07 30.9 0.1 1 1 8e-10 3.2e-07 29.8 0.1 18 161 6 139 2 174 0.76 Zeta toxin AAA_28 PF13521.6 163 pGCA_001717605_00003 - 181 4e-06 27.2 0.2 1 2 2.8e-08 1.1e-05 25.7 0.0 2 65 7 74 6 86 0.72 AAA domain AAA_28 PF13521.6 163 pGCA_001717605_00003 - 181 4e-06 27.2 0.2 2 2 4.9 2e+03 -1.1 0.0 35 127 100 125 89 158 0.52 AAA domain AAA PF00004.29 132 pGCA_001717605_00003 - 181 7.9e-06 26.3 0.0 1 2 1.4e-07 5.6e-05 23.6 0.0 2 25 8 31 7 83 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_001717605_00003 - 181 7.9e-06 26.3 0.0 2 2 1.5 6.2e+02 0.8 0.0 113 131 117 135 96 176 0.64 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 136 pGCA_001717605_00003 - 181 9.5e-06 26.1 0.0 1 1 1e-07 4e-05 24.1 0.0 1 128 10 131 10 138 0.76 AAA domain AAA_22 PF13401.6 137 pGCA_001717605_00003 - 181 1.5e-05 25.3 0.0 1 2 1.5e-07 5.9e-05 23.4 0.0 4 43 3 42 1 88 0.83 AAA domain AAA_22 PF13401.6 137 pGCA_001717605_00003 - 181 1.5e-05 25.3 0.0 2 2 2.7 1.1e+03 -0.2 0.0 61 98 120 156 91 176 0.72 AAA domain AAA_14 PF13173.6 131 pGCA_001717605_00003 - 181 6.5e-05 23.0 0.0 1 1 2.4e-07 9.5e-05 22.4 0.0 2 123 4 137 3 145 0.74 AAA domain AAA_16 PF13191.6 170 pGCA_001717605_00003 - 181 0.00031 21.2 0.0 1 1 1e-06 0.00041 20.8 0.0 22 61 2 42 1 133 0.81 AAA ATPase domain DUF2075 PF09848.9 363 pGCA_001717605_00003 - 181 0.001 18.4 0.2 1 1 3e-06 0.0012 18.2 0.2 2 27 5 32 4 146 0.90 Uncharacterized conserved protein (DUF2075) KTI12 PF08433.10 272 pGCA_001717605_00003 - 181 0.0016 17.9 0.1 1 2 9.5e-06 0.0038 16.7 0.0 3 42 6 44 5 87 0.77 Chromatin associated protein KTI12 KTI12 PF08433.10 272 pGCA_001717605_00003 - 181 0.0016 17.9 0.1 2 2 3.4 1.4e+03 -1.5 0.1 128 128 135 135 100 175 0.55 Chromatin associated protein KTI12 AAA_19 PF13245.6 146 pGCA_001717605_00003 - 181 0.0017 18.7 0.2 1 1 8.9e-06 0.0035 17.7 0.0 9 39 3 33 1 49 0.84 AAA domain AAA_24 PF13479.6 197 pGCA_001717605_00003 - 181 0.0019 17.9 0.4 1 1 1e-05 0.004 16.9 0.4 3 33 5 40 3 173 0.73 AAA domain AAA_30 PF13604.6 192 pGCA_001717605_00003 - 181 0.0023 17.7 0.2 1 1 9.8e-06 0.0039 16.9 0.2 17 40 3 26 1 39 0.84 AAA domain ABC_tran PF00005.27 137 pGCA_001717605_00003 - 181 0.0025 18.3 0.1 1 1 7.6e-06 0.003 18.1 0.1 9 51 2 43 1 160 0.83 ABC transporter ATPase_2 PF01637.18 233 pGCA_001717605_00003 - 181 0.0033 17.4 0.4 1 2 0.0026 1 9.2 0.0 19 54 3 38 1 65 0.80 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pGCA_001717605_00003 - 181 0.0033 17.4 0.4 2 2 0.019 7.5 6.4 0.4 48 114 102 174 96 179 0.71 ATPase domain predominantly from Archaea APS_kinase PF01583.20 158 pGCA_001717605_00003 - 181 0.0047 16.8 0.0 1 2 0.00025 0.099 12.5 0.0 1 45 3 45 3 94 0.65 Adenylylsulphate kinase APS_kinase PF01583.20 158 pGCA_001717605_00003 - 181 0.0047 16.8 0.0 2 2 0.28 1.1e+02 2.6 0.0 45 77 119 151 98 174 0.83 Adenylylsulphate kinase TIP49 PF06068.13 351 pGCA_001717605_00003 - 181 0.0054 16.0 0.4 1 2 4.9e-05 0.019 14.2 0.0 50 75 4 29 1 46 0.81 TIP49 P-loop domain TIP49 PF06068.13 351 pGCA_001717605_00003 - 181 0.0054 16.0 0.4 2 2 1.3 5e+02 -0.4 0.3 142 182 120 160 99 172 0.70 TIP49 P-loop domain ATPase PF06745.13 231 pGCA_001717605_00003 - 181 0.0068 15.8 1.2 1 2 4e-05 0.016 14.6 0.1 18 38 3 23 1 39 0.87 KaiC ATPase PF06745.13 231 pGCA_001717605_00003 - 181 0.0068 15.8 1.2 2 2 1.4 5.7e+02 -0.3 0.2 99 130 128 160 100 178 0.50 KaiC DnaB_C PF03796.15 255 pGCA_001717605_00003 - 181 0.01 15.2 1.0 1 2 0.00021 0.084 12.2 0.0 17 47 2 32 1 41 0.84 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_001717605_00003 - 181 0.01 15.2 1.0 2 2 0.34 1.4e+02 1.7 0.3 47 116 102 172 96 180 0.50 DnaB-like helicase C terminal domain T2SSE PF00437.20 273 pGCA_001717605_00003 - 181 0.011 14.9 0.0 1 1 4.2e-05 0.017 14.2 0.0 130 154 5 29 1 71 0.87 Type II/IV secretion system protein SRP54 PF00448.22 196 pGCA_001717605_00003 - 181 0.016 14.9 0.1 1 2 9.1e-05 0.036 13.7 0.0 3 40 6 42 4 46 0.81 SRP54-type protein, GTPase domain SRP54 PF00448.22 196 pGCA_001717605_00003 - 181 0.016 14.9 0.1 2 2 6.3 2.5e+03 -2.1 0.0 76 80 123 127 97 171 0.55 SRP54-type protein, GTPase domain Viral_helicase1 PF01443.18 234 pGCA_001717605_00003 - 181 0.017 14.8 0.0 1 1 6.8e-05 0.027 14.2 0.0 1 60 7 75 7 89 0.66 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.15 168 pGCA_001717605_00003 - 181 0.018 15.0 0.6 1 2 9e-05 0.036 14.0 0.2 2 22 7 27 6 36 0.88 NTPase NTPase_1 PF03266.15 168 pGCA_001717605_00003 - 181 0.018 15.0 0.6 2 2 8.8 3.5e+03 -2.3 0.0 92 92 126 126 96 169 0.60 NTPase RuvB_N PF05496.12 159 pGCA_001717605_00003 - 181 0.018 14.8 0.1 1 2 0.0002 0.08 12.7 0.0 36 59 7 30 3 46 0.86 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 pGCA_001717605_00003 - 181 0.018 14.8 0.1 2 2 2.6 1e+03 -0.7 0.0 96 140 111 159 103 171 0.62 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 194 pGCA_001717605_00003 - 181 0.02 14.5 0.3 1 3 0.00018 0.071 12.7 0.1 32 54 3 25 1 28 0.88 AAA domain AAA_25 PF13481.6 194 pGCA_001717605_00003 - 181 0.02 14.5 0.3 2 3 8 3.2e+03 -2.5 0.0 119 174 57 74 31 85 0.49 AAA domain AAA_25 PF13481.6 194 pGCA_001717605_00003 - 181 0.02 14.5 0.3 3 3 4.2 1.7e+03 -1.6 0.0 69 89 101 121 92 169 0.51 AAA domain Cytidylate_kin2 PF13189.6 179 pGCA_001717605_00003 - 181 0.024 14.8 0.2 1 2 0.038 15 5.6 0.1 1 22 6 27 6 33 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 pGCA_001717605_00003 - 181 0.024 14.8 0.2 2 2 0.011 4.5 7.4 0.0 108 147 99 138 42 146 0.89 Cytidylate kinase-like family Rad17 PF03215.15 186 pGCA_001717605_00003 - 181 0.033 14.1 0.0 1 2 0.00041 0.16 11.9 0.0 45 69 4 28 1 41 0.87 Rad17 P-loop domain Rad17 PF03215.15 186 pGCA_001717605_00003 - 181 0.033 14.1 0.0 2 2 1.9 7.6e+02 -0.1 0.0 113 146 110 145 98 167 0.71 Rad17 P-loop domain NB-ARC PF00931.22 252 pGCA_001717605_00003 - 181 0.038 13.2 0.0 1 1 0.00018 0.072 12.3 0.0 21 47 5 30 1 48 0.84 NB-ARC domain ArsA_ATPase PF02374.15 305 pGCA_001717605_00003 - 181 0.04 13.1 0.1 1 2 0.00025 0.099 11.8 0.0 2 44 5 46 4 84 0.80 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 pGCA_001717605_00003 - 181 0.04 13.1 0.1 2 2 2.8 1.1e+03 -1.5 0.1 162 282 137 151 105 175 0.45 Anion-transporting ATPase MKT1_N PF12247.8 90 pGCA_001717605_00003 - 181 0.042 14.2 0.0 1 1 0.00024 0.097 13.0 0.0 14 52 39 75 35 154 0.89 Temperature dependent protein affecting M2 dsRNA replication Hydin_ADK PF17213.3 198 pGCA_001717605_00003 - 181 0.043 14.1 1.2 1 2 0.00014 0.054 13.8 0.2 2 22 7 27 6 31 0.92 Hydin Adenylate kinase-like domain Hydin_ADK PF17213.3 198 pGCA_001717605_00003 - 181 0.043 14.1 1.2 2 2 9.1 3.6e+03 -2.0 0.0 58 72 123 137 109 177 0.42 Hydin Adenylate kinase-like domain NACHT PF05729.12 166 pGCA_001717605_00003 - 181 0.048 13.6 0.0 1 1 0.00018 0.071 13.0 0.0 1 31 5 35 5 73 0.75 NACHT domain AAA_11 PF13086.6 261 pGCA_001717605_00003 - 181 0.051 13.4 1.5 1 1 0.00025 0.1 12.4 1.5 16 42 3 29 1 179 0.86 AAA domain RNA_helicase PF00910.22 107 pGCA_001717605_00003 - 181 0.051 14.0 0.0 1 1 0.00024 0.095 13.1 0.0 1 35 7 42 7 77 0.71 RNA helicase Sigma54_activat PF00158.26 168 pGCA_001717605_00003 - 181 0.055 13.2 0.0 1 1 0.00025 0.1 12.3 0.0 25 67 7 56 1 89 0.73 Sigma-54 interaction domain GvpD PF07088.11 484 pGCA_001717605_00003 - 181 0.057 12.0 0.4 1 2 0.001 0.41 9.2 0.1 9 26 3 20 1 38 0.87 GvpD gas vesicle protein GvpD PF07088.11 484 pGCA_001717605_00003 - 181 0.057 12.0 0.4 2 2 0.29 1.1e+02 1.1 0.0 31 375 97 132 79 174 0.65 GvpD gas vesicle protein AAA_7 PF12775.7 181 pGCA_001717605_00003 - 181 0.059 12.9 0.2 1 2 0.0003 0.12 11.9 0.0 31 64 2 35 1 47 0.83 P-loop containing dynein motor region AAA_7 PF12775.7 181 pGCA_001717605_00003 - 181 0.059 12.9 0.2 2 2 6 2.4e+03 -2.1 0.0 84 90 126 132 98 168 0.57 P-loop containing dynein motor region PhoH PF02562.16 205 pGCA_001717605_00003 - 181 0.079 12.4 0.1 1 1 0.00046 0.18 11.2 0.1 18 43 3 28 1 36 0.81 PhoH-like protein IstB_IS21 PF01695.17 178 pGCA_001717605_00003 - 181 0.08 12.7 0.1 1 1 0.00042 0.17 11.6 0.0 48 70 5 27 1 47 0.84 IstB-like ATP binding protein ATP-synt_ab PF00006.25 213 pGCA_001717605_00003 - 181 0.086 12.5 0.0 1 1 0.00027 0.11 12.2 0.0 12 70 2 120 1 140 0.67 ATP synthase alpha/beta family, nucleotide-binding domain Ploopntkinase1 PF18748.1 196 pGCA_001717605_00003 - 181 0.1 12.1 0.1 1 2 0.24 94 2.4 0.0 16 41 3 29 1 41 0.78 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 pGCA_001717605_00003 - 181 0.1 12.1 0.1 2 2 0.0052 2.1 7.8 0.0 93 164 72 143 56 158 0.76 P-loop Nucleotide Kinase1 IPT PF01745.16 233 pGCA_001717605_00003 - 181 0.11 11.9 0.2 1 2 0.00066 0.26 10.6 0.1 3 25 6 28 4 41 0.90 Isopentenyl transferase IPT PF01745.16 233 pGCA_001717605_00003 - 181 0.11 11.9 0.2 2 2 3.7 1.5e+03 -1.6 0.0 194 211 127 144 82 161 0.65 Isopentenyl transferase Ploopntkinase3 PF18751.1 185 pGCA_001717605_00003 - 181 0.12 12.2 0.4 1 2 0.001 0.4 10.6 0.0 3 33 4 34 1 49 0.80 P-loop Nucleotide Kinase3 Ploopntkinase3 PF18751.1 185 pGCA_001717605_00003 - 181 0.12 12.2 0.4 2 2 4.4 1.8e+03 -1.3 0.0 108 145 101 139 95 160 0.69 P-loop Nucleotide Kinase3 APH PF01636.23 240 pGCA_001717605_00004 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pGCA_001717605_00004 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pGCA_001717605_00004 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pGCA_001717605_00004 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pGCA_001717605_00004 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pGCA_001717605_00004 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 pGCA_001717605_00005 - 139 1.3e-51 175.6 0.1 1 1 8.3e-56 1.5e-51 175.5 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase APH PF01636.23 240 pGCA_001717605_00006 - 250 6.8e-11 42.6 0.0 1 1 9.1e-15 8.1e-11 42.3 0.0 34 218 45 220 16 242 0.81 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pGCA_001717605_00006 - 250 0.014 14.6 0.1 1 2 0.00011 1 8.5 0.0 52 94 44 84 11 91 0.72 Fructosamine kinase Fructosamin_kin PF03881.14 288 pGCA_001717605_00006 - 250 0.014 14.6 0.1 2 2 0.0019 17 4.5 0.1 184 251 168 237 107 246 0.75 Fructosamine kinase CPT PF07931.12 174 pGCA_001717605_00007 - 146 4e-06 26.8 0.0 1 1 1.4e-09 4.9e-06 26.5 0.0 59 172 20 137 11 139 0.78 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 130 pGCA_001717605_00007 - 146 9.4e-06 26.2 0.0 1 1 3.2e-09 1.2e-05 25.9 0.0 46 122 15 98 1 106 0.77 AAA domain AAA_33 PF13671.6 143 pGCA_001717605_00007 - 146 0.00063 19.9 0.0 1 1 2.2e-07 0.0008 19.6 0.0 55 136 30 109 9 112 0.82 AAA domain MKT1_N PF12247.8 90 pGCA_001717605_00007 - 146 0.027 14.8 0.0 1 1 1.7e-05 0.063 13.6 0.0 15 52 5 40 3 131 0.90 Temperature dependent protein affecting M2 dsRNA replication AAA_17 PF13207.6 136 pGCA_001717605_00007 - 146 0.14 12.6 0.0 1 1 5.4e-05 0.19 12.1 0.0 55 128 27 96 12 103 0.73 AAA domain DUF3847 PF12958.7 81 pGCA_001717605_00008 - 119 1.8e-31 108.1 8.2 1 1 5.7e-35 2.6e-31 107.6 8.2 1 81 6 89 6 89 0.98 Protein of unknown function (DUF3847) CENP-Q PF13094.6 168 pGCA_001717605_00008 - 119 0.034 14.3 11.9 1 1 9.8e-06 0.044 14.0 11.9 46 96 5 56 2 115 0.74 CENP-Q, a CENPA-CAD centromere complex subunit TPR_8 PF13181.6 34 pGCA_001717605_00008 - 119 0.078 13.2 0.1 1 1 4.4e-05 0.2 12.0 0.1 6 27 20 41 16 48 0.89 Tetratricopeptide repeat PHM7_cyt PF14703.6 176 pGCA_001717605_00008 - 119 4.2 7.6 7.2 1 1 0.0015 6.6 6.9 7.2 40 87 3 56 1 111 0.75 Cytosolic domain of 10TM putative phosphate transporter MobA_MobL PF03389.15 222 pGCA_001717605_00009 - 498 3.7e-79 265.5 0.0 1 2 7.3e-82 1.4e-78 263.6 0.0 1 222 17 246 17 246 0.99 MobA/MobL family MobA_MobL PF03389.15 222 pGCA_001717605_00009 - 498 3.7e-79 265.5 0.0 2 2 0.85 1.7e+03 -1.5 0.1 7 188 309 339 297 367 0.59 MobA/MobL family Spectrin PF00435.21 105 pGCA_001717605_00009 - 498 0.015 15.8 2.4 1 2 9e-05 0.18 12.3 0.2 6 102 269 365 264 368 0.75 Spectrin repeat Spectrin PF00435.21 105 pGCA_001717605_00009 - 498 0.015 15.8 2.4 2 2 0.14 2.7e+02 2.1 0.1 33 90 406 463 396 464 0.78 Spectrin repeat Prominin PF05478.11 800 pGCA_001717605_00009 - 498 0.02 12.9 1.9 1 1 1.4e-05 0.029 12.4 1.9 542 695 321 479 298 487 0.84 Prominin Snapin_Pallidin PF14712.6 90 pGCA_001717605_00009 - 498 0.021 15.2 2.0 1 2 3e-05 0.059 13.8 0.3 14 69 337 393 335 395 0.95 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 pGCA_001717605_00009 - 498 0.021 15.2 2.0 2 2 0.69 1.4e+03 -0.2 0.1 36 69 430 465 427 482 0.67 Snapin/Pallidin DUF2408 PF10303.9 135 pGCA_001717605_00009 - 498 0.032 14.8 2.4 1 2 3e-05 0.06 13.9 0.3 39 120 312 394 253 396 0.74 Protein of unknown function (DUF2408) DUF2408 PF10303.9 135 pGCA_001717605_00009 - 498 0.032 14.8 2.4 2 2 0.56 1.1e+03 0.1 0.1 43 67 429 454 398 489 0.61 Protein of unknown function (DUF2408) Tup_N PF08581.10 77 pGCA_001717605_00009 - 498 0.065 13.5 2.3 1 4 2.7 5.3e+03 -2.2 0.0 45 61 158 174 157 177 0.82 Tup N-terminal Tup_N PF08581.10 77 pGCA_001717605_00009 - 498 0.065 13.5 2.3 2 4 4.2 8.4e+03 -2.8 0.0 19 48 244 273 229 276 0.72 Tup N-terminal Tup_N PF08581.10 77 pGCA_001717605_00009 - 498 0.065 13.5 2.3 3 4 0.0033 6.6 7.1 0.3 28 64 339 375 318 383 0.90 Tup N-terminal Tup_N PF08581.10 77 pGCA_001717605_00009 - 498 0.065 13.5 2.3 4 4 0.034 67 3.9 0.0 12 51 422 461 417 467 0.74 Tup N-terminal Mod_r PF07200.13 146 pGCA_001717605_00009 - 498 0.65 10.1 8.1 1 3 0.00031 0.62 10.2 0.4 54 101 334 383 293 387 0.76 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 pGCA_001717605_00009 - 498 0.65 10.1 8.1 2 3 0.094 1.9e+02 2.1 0.2 69 91 429 451 398 465 0.69 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 pGCA_001717605_00009 - 498 0.65 10.1 8.1 3 3 0.14 2.8e+02 1.5 1.6 18 57 451 490 427 498 0.33 Modifier of rudimentary (Mod(r)) protein SOAR PF16533.5 101 pGCA_001717605_00009 - 498 1.2 9.1 5.4 1 2 0.00078 1.5 8.8 0.1 50 97 326 373 300 376 0.81 STIM1 Orai1-activating region SOAR PF16533.5 101 pGCA_001717605_00009 - 498 1.2 9.1 5.4 2 2 0.35 6.9e+02 0.3 2.1 19 58 398 455 388 490 0.72 STIM1 Orai1-activating region DUF4407 PF14362.6 298 pGCA_001717605_00009 - 498 5.1 6.4 8.4 1 1 0.027 53 3.0 8.4 130 235 333 446 233 498 0.58 Domain of unknown function (DUF4407) AAA_25 PF13481.6 194 pGCA_001717605_00010 - 623 4.9e-30 104.5 0.0 1 1 8.5e-33 8.9e-30 103.7 0.0 11 193 306 475 297 476 0.87 AAA domain Toprim_2 PF13155.6 90 pGCA_001717605_00010 - 623 6.6e-18 64.9 0.0 1 2 2.4e-20 2.5e-17 63.1 0.0 1 90 189 278 189 278 0.91 Toprim-like Toprim_2 PF13155.6 90 pGCA_001717605_00010 - 623 6.6e-18 64.9 0.0 2 2 4.5 4.7e+03 -1.9 0.1 44 77 393 427 381 441 0.75 Toprim-like DUF3991 PF13154.6 76 pGCA_001717605_00010 - 623 3.3e-14 53.0 0.0 1 2 1.6e-16 1.7e-13 50.7 0.0 1 74 112 183 112 185 0.93 Protein of unknown function (DUF3991) DUF3991 PF13154.6 76 pGCA_001717605_00010 - 623 3.3e-14 53.0 0.0 2 2 2.8 3e+03 -1.3 0.0 6 19 589 602 587 620 0.71 Protein of unknown function (DUF3991) DnaB_C PF03796.15 255 pGCA_001717605_00010 - 623 8.6e-09 35.1 0.0 1 2 0.00037 0.39 10.0 0.0 19 45 329 355 326 366 0.87 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_001717605_00010 - 623 8.6e-09 35.1 0.0 2 2 4.7e-08 4.9e-05 22.8 0.0 90 185 385 478 369 490 0.79 DnaB-like helicase C terminal domain Toprim_3 PF13362.6 95 pGCA_001717605_00010 - 623 1.8e-08 34.6 0.2 1 2 4.2e-10 4.4e-07 30.2 0.0 2 92 188 281 187 283 0.86 Toprim domain Toprim_3 PF13362.6 95 pGCA_001717605_00010 - 623 1.8e-08 34.6 0.2 2 2 0.46 4.8e+02 1.2 0.6 40 85 393 439 381 446 0.77 Toprim domain ATPase PF06745.13 231 pGCA_001717605_00010 - 623 7.2e-06 25.5 0.1 1 1 1.9e-07 0.0002 20.8 0.0 16 171 326 478 324 511 0.73 KaiC AAA_22 PF13401.6 137 pGCA_001717605_00010 - 623 0.0002 21.6 0.0 1 1 5.5e-07 0.00058 20.2 0.0 6 130 330 470 329 475 0.76 AAA domain NACHT PF05729.12 166 pGCA_001717605_00010 - 623 0.0033 17.4 0.0 1 2 1.1 1.1e+03 -0.7 0.0 43 71 6 33 3 43 0.76 NACHT domain NACHT PF05729.12 166 pGCA_001717605_00010 - 623 0.0033 17.4 0.0 2 2 2.5e-05 0.027 14.4 0.0 2 28 331 357 330 429 0.89 NACHT domain Toprim_4 PF13662.6 89 pGCA_001717605_00010 - 623 0.0078 16.7 0.0 1 1 2.5e-05 0.026 15.0 0.0 47 88 227 267 212 268 0.81 Toprim domain AAA_5 PF07728.14 138 pGCA_001717605_00010 - 623 0.018 15.0 0.0 1 1 6e-05 0.063 13.3 0.0 3 26 333 357 332 406 0.82 AAA domain (dynein-related subfamily) Rad51 PF08423.11 255 pGCA_001717605_00010 - 623 0.05 12.8 0.0 1 1 0.00051 0.54 9.5 0.0 34 190 326 475 324 494 0.69 Rad51 Toprim PF01751.22 103 pGCA_001717605_00010 - 623 0.051 13.8 0.0 1 1 0.00011 0.12 12.7 0.0 51 87 222 258 204 269 0.85 Toprim domain AAA_11 PF13086.6 261 pGCA_001717605_00010 - 623 0.065 13.0 0.0 1 2 0.24 2.6e+02 1.2 0.0 50 97 230 271 208 294 0.80 AAA domain AAA_11 PF13086.6 261 pGCA_001717605_00010 - 623 0.065 13.0 0.0 2 2 0.00095 1 9.1 0.0 18 43 330 355 320 400 0.76 AAA domain RNA_helicase PF00910.22 107 pGCA_001717605_00010 - 623 0.13 12.7 0.0 1 2 2.6 2.8e+03 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 pGCA_001717605_00010 - 623 0.13 12.7 0.0 2 2 0.00069 0.73 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase PhoH PF02562.16 205 pGCA_001717605_00010 - 623 0.17 11.3 0.0 1 1 0.00034 0.36 10.3 0.0 20 47 330 357 322 362 0.88 PhoH-like protein zf-CHC2 PF01807.20 98 pGCA_001717605_00010 - 623 0.18 11.7 0.0 1 1 0.00035 0.37 10.6 0.0 44 88 40 82 8 90 0.84 CHC2 zinc finger DUF2075 PF09848.9 363 pGCA_001717605_00010 - 623 0.2 10.8 0.0 1 1 0.00031 0.33 10.2 0.0 2 26 330 354 329 398 0.89 Uncharacterized conserved protein (DUF2075) IMS_C PF11799.8 118 pGCA_001717605_00011 - 236 1.1e-12 48.7 0.0 1 1 2.1e-16 1.9e-12 48.0 0.0 8 111 94 221 90 226 0.91 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 32 pGCA_001717605_00011 - 236 0.0002 21.5 0.0 1 2 7.5e-08 0.00067 19.8 0.1 6 32 19 46 16 46 0.92 IMS family HHH motif IMS_HHH PF11798.8 32 pGCA_001717605_00011 - 236 0.0002 21.5 0.0 2 2 1.6 1.4e+04 -3.2 0.0 17 28 79 90 79 92 0.79 IMS family HHH motif Cob_adeno_trans PF01923.18 164 pGCA_001717605_00014 - 130 0.014 15.6 0.1 1 1 9.4e-07 0.017 15.3 0.1 25 106 37 129 23 130 0.80 Cobalamin adenosyltransferase DUF3825 PF12873.7 239 pGCA_001717605_00015 - 335 4.2e-29 101.7 0.3 1 1 3.7e-33 6.7e-29 101.0 0.3 1 239 106 330 106 330 0.86 Domain of unknown function (DUF3825) DUF4795 PF16043.5 204 pGCA_001717605_00016 - 201 0.026 14.1 0.1 1 1 2.4e-06 0.043 13.4 0.1 60 124 45 109 31 174 0.86 Domain of unknown function (DUF4795) SGT1 PF07093.11 583 pGCA_001717605_00017 - 50 0.046 12.2 2.7 1 1 7.5e-06 0.045 12.2 2.7 511 553 7 49 1 50 0.79 SGT1 protein PG_binding_4 PF12229.8 114 pGCA_001717605_00017 - 50 0.057 13.7 1.0 1 1 1.1e-05 0.065 13.5 1.0 42 79 10 48 2 50 0.81 Putative peptidoglycan binding domain DUF2175 PF09943.9 98 pGCA_001717605_00017 - 50 0.077 13.3 1.2 1 1 1.4e-05 0.082 13.2 1.2 60 89 9 38 2 47 0.83 Uncharacterized protein conserved in archaea (DUF2175) DUF5309 PF17236.2 280 pGCA_001717605_00018 - 81 3e-05 23.5 0.5 1 1 1.8e-09 3.3e-05 23.4 0.5 4 53 24 74 21 81 0.82 Family of unknown function (DUF5309) HicA_toxin PF07927.12 58 pGCA_001717605_00019 - 75 1.7e-06 28.0 0.0 1 1 1.4e-10 2.5e-06 27.4 0.0 5 55 24 71 20 72 0.88 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pGCA_001717605_00020 - 119 8.3e-09 35.6 0.3 1 2 4.2e-06 0.038 14.1 0.0 1 60 12 74 12 79 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 pGCA_001717605_00020 - 119 8.3e-09 35.6 0.3 2 2 3.9e-08 0.00035 20.7 0.1 88 123 77 108 72 108 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 pGCA_001717605_00020 - 119 0.15 11.9 0.0 1 1 3.3e-05 0.29 11.0 0.0 3 35 80 112 79 115 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 ParE_toxin PF05016.15 90 pGCA_001717605_00022 - 93 1.1e-07 32.4 0.1 1 1 6.6e-12 1.2e-07 32.3 0.1 4 82 6 85 3 89 0.87 ParE toxin of type II toxin-antitoxin system, parDE YafQ_toxin PF15738.5 88 pGCA_001717605_00024 - 91 8.9e-29 99.7 1.1 1 1 5.4e-33 9.7e-29 99.5 1.1 2 88 3 89 2 89 0.98 Bacterial toxin of type II toxin-antitoxin system, YafQ DUF4131 PF13567.6 167 pGCA_001717605_00025 - 106 0.00082 19.1 0.1 1 1 2.8e-07 0.001 18.8 0.1 3 83 19 97 17 100 0.70 Domain of unknown function (DUF4131) DUF981 PF06168.11 187 pGCA_001717605_00025 - 106 0.014 15.3 3.1 1 1 4.9e-06 0.018 15.0 3.1 120 175 10 66 5 73 0.87 Protein of unknown function (DUF981) Wzy_C PF04932.15 155 pGCA_001717605_00025 - 106 0.055 13.1 1.3 1 1 1.8e-05 0.064 12.9 1.3 19 65 24 71 19 96 0.81 O-Antigen ligase DUF2721 PF11026.8 129 pGCA_001717605_00025 - 106 0.068 13.1 3.9 1 1 2.4e-05 0.085 12.8 3.9 53 118 6 66 2 69 0.85 Protein of unknown function (DUF2721) DUF2663 PF10864.8 127 pGCA_001717605_00025 - 106 0.13 12.7 1.9 1 1 4.5e-05 0.16 12.4 1.9 8 80 9 81 2 86 0.64 Protein of unknown function (DUF2663) TraG_N PF07916.11 467 pGCA_001717605_00026 - 900 3e-39 135.2 20.8 1 4 1.7e-43 3e-39 135.2 20.8 38 465 23 446 1 452 0.78 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pGCA_001717605_00026 - 900 3e-39 135.2 20.8 2 4 0.1 1.8e+03 -2.6 0.9 267 318 538 590 504 600 0.52 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pGCA_001717605_00026 - 900 3e-39 135.2 20.8 3 4 0.077 1.4e+03 -2.2 2.0 246 312 686 748 651 775 0.48 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pGCA_001717605_00026 - 900 3e-39 135.2 20.8 4 4 0.36 6.4e+03 -4.4 5.1 229 319 809 885 797 899 0.46 TraG-like protein, N-terminal region Glyco_tranf_2_5 PF13712.6 210 pGCA_001717605_00027 - 267 0.0018 18.0 4.5 1 1 1.9e-07 0.0035 17.1 4.5 4 77 114 190 111 198 0.85 Glycosyltransferase like family UvrA_DNA-bind PF17755.1 110 pGCA_001717605_00028 - 422 0.0008 19.7 0.3 1 2 1.9e-05 0.33 11.3 0.1 24 65 32 73 19 86 0.83 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pGCA_001717605_00028 - 422 0.0008 19.7 0.3 2 2 0.00081 14 6.0 0.0 15 33 92 109 88 135 0.79 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pGCA_001717605_00029 - 426 0.003 17.9 0.2 1 3 0.00012 2.1 8.7 0.1 24 65 36 77 30 90 0.84 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pGCA_001717605_00029 - 426 0.003 17.9 0.2 2 3 0.00082 15 6.0 0.0 15 33 96 113 92 139 0.79 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pGCA_001717605_00029 - 426 0.003 17.9 0.2 3 3 0.29 5.3e+03 -2.2 0.0 77 97 316 336 306 338 0.82 UvrA DNA-binding domain Ank_2 PF12796.7 83 pGCA_001717605_00032 - 313 1.4e-11 44.8 0.4 1 2 8e-08 0.00029 21.4 0.0 32 82 140 197 71 198 0.81 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pGCA_001717605_00032 - 313 1.4e-11 44.8 0.4 2 2 3e-10 1.1e-06 29.2 0.1 5 80 142 235 138 238 0.78 Ankyrin repeats (3 copies) Ank_3 PF13606.6 31 pGCA_001717605_00032 - 313 5.4e-10 38.6 0.4 1 4 0.015 55 4.8 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001717605_00032 - 313 5.4e-10 38.6 0.4 2 4 0.026 92 4.1 0.0 10 29 142 160 134 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001717605_00032 - 313 5.4e-10 38.6 0.4 3 4 2.6e-06 0.0094 16.4 0.0 2 30 168 195 167 196 0.94 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001717605_00032 - 313 5.4e-10 38.6 0.4 4 4 0.0018 6.5 7.7 0.0 1 30 206 235 206 236 0.92 Ankyrin repeat Ank_4 PF13637.6 55 pGCA_001717605_00032 - 313 0.0016 19.0 0.1 1 4 0.84 3e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001717605_00032 - 313 0.0016 19.0 0.1 2 4 0.00017 0.63 10.7 0.0 13 55 146 188 134 188 0.78 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001717605_00032 - 313 0.0016 19.0 0.1 3 4 9e-05 0.32 11.6 0.0 2 55 169 228 168 228 0.84 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001717605_00032 - 313 0.0016 19.0 0.1 4 4 0.02 70 4.2 0.0 3 28 209 235 206 244 0.89 Ankyrin repeats (many copies) Ank PF00023.30 32 pGCA_001717605_00032 - 313 0.0035 17.7 0.0 1 3 0.023 84 3.9 0.0 10 25 142 158 130 166 0.83 Ankyrin repeat Ank PF00023.30 32 pGCA_001717605_00032 - 313 0.0035 17.7 0.0 2 3 0.031 1.1e+02 3.5 0.0 3 31 169 198 167 199 0.82 Ankyrin repeat Ank PF00023.30 32 pGCA_001717605_00032 - 313 0.0035 17.7 0.0 3 3 0.0048 17 6.0 0.0 15 28 221 235 206 238 0.69 Ankyrin repeat Ank_5 PF13857.6 56 pGCA_001717605_00032 - 313 0.016 15.5 0.1 1 4 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001717605_00032 - 313 0.016 15.5 0.1 2 4 0.00045 1.6 9.1 0.0 23 54 141 173 139 175 0.92 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001717605_00032 - 313 0.016 15.5 0.1 3 4 0.00063 2.3 8.7 0.0 1 46 153 198 153 211 0.91 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001717605_00032 - 313 0.016 15.5 0.1 4 4 1.8 6.6e+03 -2.4 0.0 32 53 224 243 214 244 0.66 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 pGCA_001717605_00033 - 567 1.6e-07 31.5 0.0 1 2 1 1.8e+04 -5.2 5.9 25 58 343 376 306 392 0.55 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pGCA_001717605_00033 - 567 1.6e-07 31.5 0.0 2 2 9.1e-12 1.6e-07 31.5 0.0 13 84 416 489 397 491 0.81 Restriction endonuclease fold toxin 7 Ank_2 PF12796.7 83 pGCA_001717605_00034 - 317 1.6e-14 54.2 0.1 1 3 1 3.1e+03 -1.1 0.0 34 48 26 40 19 64 0.65 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pGCA_001717605_00034 - 317 1.6e-14 54.2 0.1 2 3 9.3e-09 2.8e-05 24.6 0.0 25 82 134 202 72 203 0.67 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pGCA_001717605_00034 - 317 1.6e-14 54.2 0.1 3 3 5.1e-12 1.5e-08 35.1 0.0 6 80 148 239 139 242 0.78 Ankyrin repeats (3 copies) Ank_3 PF13606.6 31 pGCA_001717605_00034 - 317 6.1e-10 38.5 0.0 1 4 0.033 98 4.0 0.0 8 26 77 97 72 101 0.82 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001717605_00034 - 317 6.1e-10 38.5 0.0 2 4 0.12 3.6e+02 2.3 0.0 12 29 149 165 137 167 0.81 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001717605_00034 - 317 6.1e-10 38.5 0.0 3 4 3.1e-07 0.00093 19.5 0.0 2 30 173 200 172 201 0.95 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001717605_00034 - 317 6.1e-10 38.5 0.0 4 4 0.0045 13 6.7 0.0 3 30 212 239 210 240 0.89 Ankyrin repeat Ank_4 PF13637.6 55 pGCA_001717605_00034 - 317 8.6e-06 26.2 0.0 1 3 1.3 3.8e+03 -1.4 0.0 8 21 78 93 71 104 0.57 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001717605_00034 - 317 8.6e-06 26.2 0.0 2 3 5.7e-07 0.0017 18.9 0.0 13 55 151 193 137 193 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001717605_00034 - 317 8.6e-06 26.2 0.0 3 3 0.043 1.3e+02 3.3 0.0 4 41 214 249 212 260 0.72 Ankyrin repeats (many copies) Ank PF00023.30 32 pGCA_001717605_00034 - 317 3.4e-05 24.1 0.0 1 3 0.036 1.1e+02 3.5 0.0 10 25 143 163 138 170 0.73 Ankyrin repeat Ank PF00023.30 32 pGCA_001717605_00034 - 317 3.4e-05 24.1 0.0 2 3 0.00084 2.5 8.7 0.0 2 31 173 203 172 204 0.87 Ankyrin repeat Ank PF00023.30 32 pGCA_001717605_00034 - 317 3.4e-05 24.1 0.0 3 3 0.0022 6.7 7.4 0.0 5 28 214 239 211 242 0.76 Ankyrin repeat Ank_5 PF13857.6 56 pGCA_001717605_00034 - 317 0.0018 18.6 0.3 1 5 0.31 9.3e+02 0.3 0.0 24 39 26 42 25 49 0.86 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001717605_00034 - 317 0.0018 18.6 0.3 2 5 0.69 2.1e+03 -0.8 0.0 26 42 83 100 77 102 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001717605_00034 - 317 0.0018 18.6 0.3 3 5 0.032 97 3.5 0.0 25 54 148 178 148 179 0.86 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001717605_00034 - 317 0.0018 18.6 0.3 4 5 4.3e-05 0.13 12.6 0.0 9 48 167 205 158 207 0.83 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001717605_00034 - 317 0.0018 18.6 0.3 5 5 2.9 8.6e+03 -2.7 0.0 37 54 233 248 228 250 0.47 Ankyrin repeats (many copies) APG17 PF04108.12 396 pGCA_001717605_00034 - 317 0.017 14.2 0.7 1 1 8e-06 0.024 13.8 0.7 91 160 1 77 1 101 0.71 Autophagy protein Apg17 DUF2345 PF10106.9 151 pGCA_001717605_00035 - 486 0.0046 16.8 2.2 1 1 2.7e-06 0.016 15.1 2.2 28 132 379 478 376 482 0.84 Uncharacterized protein conserved in bacteria (DUF2345) DUF3540 PF12059.8 199 pGCA_001717605_00035 - 486 0.029 14.2 0.9 1 2 0.079 4.7e+02 0.5 0.0 31 45 138 152 136 159 0.80 Protein of unknown function (DUF3540) DUF3540 PF12059.8 199 pGCA_001717605_00035 - 486 0.029 14.2 0.9 2 2 3.3e-05 0.2 11.5 0.2 60 128 387 454 381 467 0.85 Protein of unknown function (DUF3540) Gp5_C PF06715.12 24 pGCA_001717605_00035 - 486 0.094 12.9 0.1 1 5 3 1.8e+04 -4.0 0.7 11 17 227 233 225 235 0.43 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pGCA_001717605_00035 - 486 0.094 12.9 0.1 2 5 1.6e-05 0.094 12.9 0.1 3 24 261 282 259 290 0.67 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pGCA_001717605_00035 - 486 0.094 12.9 0.1 3 5 0.062 3.7e+02 1.6 0.0 13 24 335 346 334 346 0.89 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pGCA_001717605_00035 - 486 0.094 12.9 0.1 4 5 0.19 1.2e+03 0.1 0.1 1 18 346 364 346 364 0.83 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pGCA_001717605_00035 - 486 0.094 12.9 0.1 5 5 0.1 6.3e+02 0.9 0.1 8 17 370 379 363 381 0.68 Gp5 C-terminal repeat (3 copies) Bacteriocin_IIc PF10439.9 62 pGCA_001717605_00036 - 689 0.0019 18.2 10.8 1 2 4.5 1.4e+04 -3.7 0.3 27 36 34 43 28 45 0.52 Bacteriocin class II with double-glycine leader peptide Bacteriocin_IIc PF10439.9 62 pGCA_001717605_00036 - 689 0.0019 18.2 10.8 2 2 6.5e-07 0.0019 18.2 10.8 23 61 155 192 151 193 0.91 Bacteriocin class II with double-glycine leader peptide Gly-zipper_Omp PF13488.6 46 pGCA_001717605_00036 - 689 0.04 13.9 10.0 1 1 2.8e-05 0.084 12.9 10.0 8 36 161 191 161 199 0.66 Glycine zipper DUF3482 PF11981.8 294 pGCA_001717605_00036 - 689 0.1 12.0 1.3 1 1 6.9e-05 0.21 11.0 1.3 143 190 149 192 145 215 0.87 Domain of unknown function (DUF3482) Gly-zipper_YMGG PF13441.6 46 pGCA_001717605_00036 - 689 0.17 11.6 8.3 1 1 0.00012 0.36 10.6 8.3 12 40 161 190 152 195 0.82 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.15 42 pGCA_001717605_00036 - 689 1.4 8.9 12.1 1 1 0.00089 2.7 7.9 12.1 4 39 161 191 160 192 0.87 Glycine zipper 2TM domain DUF1269 PF06897.12 100 pGCA_001717605_00036 - 689 5.8 7.3 7.3 1 2 0.0045 13 6.1 5.6 3 35 162 192 160 210 0.81 Protein of unknown function (DUF1269) DUF1269 PF06897.12 100 pGCA_001717605_00036 - 689 5.8 7.3 7.3 2 2 1.2 3.7e+03 -1.7 0.0 40 93 307 357 299 362 0.61 Protein of unknown function (DUF1269) Phage_GPD PF05954.11 304 pGCA_001717605_00038 - 837 5.4e-18 65.3 0.0 1 1 9.6e-22 8.6e-18 64.7 0.0 21 281 72 360 45 376 0.76 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 pGCA_001717605_00038 - 837 0.11 12.1 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 pGCA_001717605_00038 - 837 0.11 12.1 0.0 2 2 0.00043 3.9 7.2 0.0 19 49 461 491 452 517 0.81 TCL1/MTCP1 family T6SS_TssG PF06996.11 299 pGCA_001717605_00039 - 302 1.9e-47 161.9 0.0 1 1 1.2e-51 2.2e-47 161.8 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG T6SS_TssF PF05947.12 603 pGCA_001717605_00040 - 573 2.3e-110 369.9 0.0 1 1 1.5e-114 2.6e-110 369.8 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF GPW_gp25 PF04965.14 95 pGCA_001717605_00041 - 130 1.2e-09 37.8 0.0 1 1 2.6e-13 1.5e-09 37.5 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 pGCA_001717605_00041 - 130 0.0076 16.1 0.3 1 1 1.6e-06 0.0097 15.8 0.3 93 159 20 87 6 92 0.89 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 pGCA_001717605_00041 - 130 0.051 13.0 0.1 1 2 2.1e-05 0.12 11.8 0.1 82 121 5 46 1 64 0.83 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 pGCA_001717605_00041 - 130 0.051 13.0 0.1 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 422 pGCA_001717605_00042 - 484 1e-169 564.9 0.0 1 1 1.3e-173 1.2e-169 564.6 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 pGCA_001717605_00042 - 484 0.096 12.7 0.8 1 3 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pGCA_001717605_00042 - 484 0.096 12.7 0.8 2 3 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pGCA_001717605_00042 - 484 0.096 12.7 0.8 3 3 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 155 pGCA_001717605_00043 - 161 1.2e-51 174.6 3.8 1 1 1.5e-55 1.3e-51 174.4 3.8 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 pGCA_001717605_00043 - 161 0.082 11.5 0.0 1 1 1.1e-05 0.099 11.2 0.0 171 227 55 111 40 127 0.90 Chitin synthase T6SS_VasJ PF16989.5 255 pGCA_001717605_00044 - 415 1.2e-12 47.9 0.0 1 1 3.9e-16 1.7e-12 47.3 0.0 3 153 176 323 174 408 0.84 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 pGCA_001717605_00044 - 415 0.00014 22.0 0.2 1 2 1.8e-07 0.0008 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 pGCA_001717605_00044 - 415 0.00014 22.0 0.2 2 2 0.31 1.4e+03 -0.6 0.0 47 71 185 209 162 212 0.83 ImpA, N-terminal, type VI secretion system PX PF00787.24 113 pGCA_001717605_00044 - 415 0.074 13.0 14.5 1 3 0.00025 1.1 9.2 2.4 31 111 33 130 20 131 0.67 PX domain PX PF00787.24 113 pGCA_001717605_00044 - 415 0.074 13.0 14.5 2 3 0.00084 3.8 7.5 0.2 16 112 155 275 132 276 0.68 PX domain PX PF00787.24 113 pGCA_001717605_00044 - 415 0.074 13.0 14.5 3 3 0.052 2.3e+02 1.8 0.7 22 97 316 396 296 404 0.70 PX domain TetR_C_24 PF17932.1 114 pGCA_001717605_00044 - 415 0.19 12.0 0.0 1 1 8.8e-05 0.4 11.0 0.0 20 68 71 119 62 132 0.87 Tetracyclin repressor-like, C-terminal domain T6SS-SciN PF12790.7 120 pGCA_001717605_00045 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 428 pGCA_001717605_00046 - 465 1.3e-112 376.6 0.0 1 1 8.6e-117 1.5e-112 376.4 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 205 pGCA_001717605_00047 - 257 1.1e-34 120.0 0.0 1 1 6.9e-39 1.2e-34 119.8 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_HCP PF05638.12 129 pGCA_001717605_00048 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 259 pGCA_001717605_00049 - 1175 6.2e-41 140.5 0.0 1 1 4.1e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 pGCA_001717605_00049 - 1175 5.9e-40 137.0 0.5 1 1 4.1e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 pGCA_001717605_00049 - 1175 8.2e-27 94.5 2.1 1 1 4.9e-30 1.3e-26 93.9 2.1 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 pGCA_001717605_00049 - 1175 0.0003 20.7 0.0 1 2 8.9e-06 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 pGCA_001717605_00049 - 1175 0.0003 20.7 0.0 2 2 0.047 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 pGCA_001717605_00049 - 1175 0.0011 19.0 0.1 1 2 1.7e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 pGCA_001717605_00049 - 1175 0.0011 19.0 0.1 2 2 4.1 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 pGCA_001717605_00049 - 1175 0.0033 17.1 5.0 1 3 1.4e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 pGCA_001717605_00049 - 1175 0.0033 17.1 5.0 2 3 0.078 2e+02 1.5 0.0 41 78 451 488 431 588 0.81 O-Antigen ligase Wzy_C PF04932.15 155 pGCA_001717605_00049 - 1175 0.0033 17.1 5.0 3 3 0.076 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 pGCA_001717605_00049 - 1175 0.055 13.2 0.1 1 2 0.00017 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pGCA_001717605_00049 - 1175 0.055 13.2 0.1 2 2 0.72 1.8e+03 -1.3 0.0 22 37 841 856 831 873 0.75 P-loop containing region of AAA domain FHA PF00498.26 69 pGCA_001717605_00050 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 pGCA_001717605_00050 - 299 0.0007 19.9 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 pGCA_001717605_00050 - 299 0.0007 19.9 0.0 2 2 0.23 1.4e+03 -0.3 0.0 31 57 199 225 198 231 0.89 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 pGCA_001717605_00050 - 299 0.05 14.0 3.1 1 2 0.044 2.6e+02 2.1 0.1 18 58 107 147 105 150 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 pGCA_001717605_00050 - 299 0.05 14.0 3.1 2 2 7.4e-05 0.44 11.0 0.9 21 82 151 212 146 218 0.92 Ferredoxin-fold anticodon binding domain Y1_Tnp PF01797.16 121 pGCA_001717605_00053 - 158 8.8e-37 125.9 2.5 1 1 6.8e-41 1.2e-36 125.4 2.5 2 121 13 133 12 133 0.95 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 69 pGCA_001717605_00054 - 415 2.2e-22 78.7 1.3 1 1 2.3e-25 4.6e-22 77.7 1.3 1 69 324 393 324 393 0.98 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 pGCA_001717605_00054 - 415 5.9e-13 49.1 2.4 1 1 7.1e-16 1.4e-12 47.9 2.4 10 118 187 302 172 304 0.76 Probable transposase HTH_OrfB_IS605 PF12323.8 47 pGCA_001717605_00054 - 415 3.8e-10 39.1 2.8 1 1 4.2e-13 8.4e-10 38.0 2.8 1 46 1 47 1 48 0.95 Helix-turn-helix domain HypA PF01155.19 112 pGCA_001717605_00054 - 415 0.022 14.8 0.4 1 1 2.7e-05 0.053 13.5 0.4 19 96 298 380 281 391 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 4_1_CTD PF05902.13 107 pGCA_001717605_00054 - 415 0.058 13.5 0.1 1 3 0.00018 0.35 11.0 0.0 35 96 47 108 16 115 0.83 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 pGCA_001717605_00054 - 415 0.058 13.5 0.1 2 3 2 4e+03 -2.1 0.0 25 37 178 190 158 231 0.62 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 pGCA_001717605_00054 - 415 0.058 13.5 0.1 3 3 2.8 5.5e+03 -2.5 0.0 51 66 333 348 331 355 0.83 4.1 protein C-terminal domain (CTD) Zn_ribbon_17 PF17120.5 58 pGCA_001717605_00054 - 415 0.071 12.7 0.5 1 1 6.8e-05 0.14 11.8 0.5 4 32 351 384 348 395 0.81 Zinc-ribbon, C4HC2 type DUF1161 PF06649.12 52 pGCA_001717605_00054 - 415 0.12 12.6 0.8 1 1 0.00016 0.32 11.2 0.8 3 32 270 299 269 311 0.89 Protein of unknown function (DUF1161) Prok-RING_1 PF14446.6 54 pGCA_001717605_00054 - 415 0.16 11.9 3.2 1 1 0.00018 0.36 10.8 3.2 2 33 349 383 348 388 0.83 Prokaryotic RING finger family 1 Spt4 PF06093.13 77 pGCA_001717605_00054 - 415 0.82 9.8 4.4 1 2 3.3 6.5e+03 -2.7 0.0 55 70 78 93 76 98 0.76 Spt4/RpoE2 zinc finger Spt4 PF06093.13 77 pGCA_001717605_00054 - 415 0.82 9.8 4.4 2 2 0.00041 0.81 9.8 2.2 2 30 352 382 351 393 0.79 Spt4/RpoE2 zinc finger Fic PF02661.18 97 pGCA_001717605_00055 - 264 8.4e-24 84.3 0.1 1 1 2.3e-27 2.1e-23 83.0 0.1 2 96 95 191 94 192 0.96 Fic/DOC family S_layer_C PF05124.12 220 pGCA_001717605_00055 - 264 6.6 6.6 8.7 1 2 6.2e-05 0.56 10.2 2.0 12 114 2 116 1 132 0.69 S-layer like family, C-terminal region S_layer_C PF05124.12 220 pGCA_001717605_00055 - 264 6.6 6.6 8.7 2 2 0.065 5.8e+02 0.3 0.6 158 182 230 253 229 260 0.77 S-layer like family, C-terminal region Y1_Tnp PF01797.16 121 pGCA_001717605_00056 - 158 8.8e-37 125.9 2.5 1 1 6.8e-41 1.2e-36 125.4 2.5 2 121 13 133 12 133 0.95 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 69 pGCA_001717605_00057 - 415 2.2e-22 78.7 1.3 1 1 2.3e-25 4.6e-22 77.7 1.3 1 69 324 393 324 393 0.98 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 pGCA_001717605_00057 - 415 5.9e-13 49.1 2.4 1 1 7.1e-16 1.4e-12 47.9 2.4 10 118 187 302 172 304 0.76 Probable transposase HTH_OrfB_IS605 PF12323.8 47 pGCA_001717605_00057 - 415 3.8e-10 39.1 2.8 1 1 4.2e-13 8.4e-10 38.0 2.8 1 46 1 47 1 48 0.95 Helix-turn-helix domain HypA PF01155.19 112 pGCA_001717605_00057 - 415 0.022 14.8 0.4 1 1 2.7e-05 0.053 13.5 0.4 19 96 298 380 281 391 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 4_1_CTD PF05902.13 107 pGCA_001717605_00057 - 415 0.058 13.5 0.1 1 3 0.00018 0.35 11.0 0.0 35 96 47 108 16 115 0.83 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 pGCA_001717605_00057 - 415 0.058 13.5 0.1 2 3 2 4e+03 -2.1 0.0 25 37 178 190 158 231 0.62 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 pGCA_001717605_00057 - 415 0.058 13.5 0.1 3 3 2.8 5.5e+03 -2.5 0.0 51 66 333 348 331 355 0.83 4.1 protein C-terminal domain (CTD) Zn_ribbon_17 PF17120.5 58 pGCA_001717605_00057 - 415 0.071 12.7 0.5 1 1 6.8e-05 0.14 11.8 0.5 4 32 351 384 348 395 0.81 Zinc-ribbon, C4HC2 type DUF1161 PF06649.12 52 pGCA_001717605_00057 - 415 0.12 12.6 0.8 1 1 0.00016 0.32 11.2 0.8 3 32 270 299 269 311 0.89 Protein of unknown function (DUF1161) Prok-RING_1 PF14446.6 54 pGCA_001717605_00057 - 415 0.16 11.9 3.2 1 1 0.00018 0.36 10.8 3.2 2 33 349 383 348 388 0.83 Prokaryotic RING finger family 1 Spt4 PF06093.13 77 pGCA_001717605_00057 - 415 0.82 9.8 4.4 1 2 3.3 6.5e+03 -2.7 0.0 55 70 78 93 76 98 0.76 Spt4/RpoE2 zinc finger Spt4 PF06093.13 77 pGCA_001717605_00057 - 415 0.82 9.8 4.4 2 2 0.00041 0.81 9.8 2.2 2 30 352 382 351 393 0.79 Spt4/RpoE2 zinc finger Fic PF02661.18 97 pGCA_001717605_00058 - 264 8.4e-24 84.3 0.1 1 1 2.3e-27 2.1e-23 83.0 0.1 2 96 95 191 94 192 0.96 Fic/DOC family S_layer_C PF05124.12 220 pGCA_001717605_00058 - 264 6.6 6.6 8.7 1 2 6.2e-05 0.56 10.2 2.0 12 114 2 116 1 132 0.69 S-layer like family, C-terminal region S_layer_C PF05124.12 220 pGCA_001717605_00058 - 264 6.6 6.6 8.7 2 2 0.065 5.8e+02 0.3 0.6 158 182 230 253 229 260 0.77 S-layer like family, C-terminal region Y1_Tnp PF01797.16 121 pGCA_001717605_00059 - 158 8.8e-37 125.9 2.5 1 1 6.8e-41 1.2e-36 125.4 2.5 2 121 13 133 12 133 0.95 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 69 pGCA_001717605_00060 - 415 2.2e-22 78.7 1.3 1 1 2.3e-25 4.6e-22 77.7 1.3 1 69 324 393 324 393 0.98 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 120 pGCA_001717605_00060 - 415 5.9e-13 49.1 2.4 1 1 7.1e-16 1.4e-12 47.9 2.4 10 118 187 302 172 304 0.76 Probable transposase HTH_OrfB_IS605 PF12323.8 47 pGCA_001717605_00060 - 415 3.8e-10 39.1 2.8 1 1 4.2e-13 8.4e-10 38.0 2.8 1 46 1 47 1 48 0.95 Helix-turn-helix domain HypA PF01155.19 112 pGCA_001717605_00060 - 415 0.022 14.8 0.4 1 1 2.7e-05 0.053 13.5 0.4 19 96 298 380 281 391 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 4_1_CTD PF05902.13 107 pGCA_001717605_00060 - 415 0.058 13.5 0.1 1 3 0.00018 0.35 11.0 0.0 35 96 47 108 16 115 0.83 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 pGCA_001717605_00060 - 415 0.058 13.5 0.1 2 3 2 4e+03 -2.1 0.0 25 37 178 190 158 231 0.62 4.1 protein C-terminal domain (CTD) 4_1_CTD PF05902.13 107 pGCA_001717605_00060 - 415 0.058 13.5 0.1 3 3 2.8 5.5e+03 -2.5 0.0 51 66 333 348 331 355 0.83 4.1 protein C-terminal domain (CTD) Zn_ribbon_17 PF17120.5 58 pGCA_001717605_00060 - 415 0.071 12.7 0.5 1 1 6.8e-05 0.14 11.8 0.5 4 32 351 384 348 395 0.81 Zinc-ribbon, C4HC2 type DUF1161 PF06649.12 52 pGCA_001717605_00060 - 415 0.12 12.6 0.8 1 1 0.00016 0.32 11.2 0.8 3 32 270 299 269 311 0.89 Protein of unknown function (DUF1161) Prok-RING_1 PF14446.6 54 pGCA_001717605_00060 - 415 0.16 11.9 3.2 1 1 0.00018 0.36 10.8 3.2 2 33 349 383 348 388 0.83 Prokaryotic RING finger family 1 Spt4 PF06093.13 77 pGCA_001717605_00060 - 415 0.82 9.8 4.4 1 2 3.3 6.5e+03 -2.7 0.0 55 70 78 93 76 98 0.76 Spt4/RpoE2 zinc finger Spt4 PF06093.13 77 pGCA_001717605_00060 - 415 0.82 9.8 4.4 2 2 0.00041 0.81 9.8 2.2 2 30 352 382 351 393 0.79 Spt4/RpoE2 zinc finger DUF3492 PF11997.8 268 pGCA_001717605_00061 - 671 0.19 11.4 2.9 1 1 5.5e-05 0.5 10.1 2.9 33 164 64 199 59 210 0.76 Domain of unknown function (DUF3492) CLZ PF16526.5 71 pGCA_001717605_00061 - 671 0.99 9.8 4.8 1 2 0.01 90 3.5 0.6 30 58 122 150 104 162 0.78 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CLZ PF16526.5 71 pGCA_001717605_00061 - 671 0.99 9.8 4.8 2 2 0.0012 11 6.5 0.2 22 56 530 564 522 570 0.86 C-terminal leucine zipper domain of cyclic nucleotide-gated channels MeMO_Hyd_G PF02964.16 161 pGCA_001717605_00062 - 476 0.078 13.0 0.7 1 2 1.9e-05 0.17 11.9 0.1 47 106 120 180 107 186 0.87 Methane monooxygenase, hydrolase gamma chain MeMO_Hyd_G PF02964.16 161 pGCA_001717605_00062 - 476 0.078 13.0 0.7 2 2 0.47 4.2e+03 -2.4 0.1 25 34 348 357 319 400 0.63 Methane monooxygenase, hydrolase gamma chain Vta1 PF04652.16 145 pGCA_001717605_00062 - 476 2.5 8.1 10.2 1 3 0.31 2.7e+03 -1.8 0.2 116 136 148 169 137 174 0.78 Vta1 like Vta1 PF04652.16 145 pGCA_001717605_00062 - 476 2.5 8.1 10.2 2 3 0.16 1.5e+03 -0.9 0.2 29 60 317 356 312 369 0.67 Vta1 like Vta1 PF04652.16 145 pGCA_001717605_00062 - 476 2.5 8.1 10.2 3 3 4.8e-06 0.043 13.8 1.0 8 79 392 467 384 470 0.79 Vta1 like DUF2974 PF11187.8 224 pGCA_001717605_00063 - 511 1.4e-06 28.0 0.0 1 1 1.5e-09 3.4e-06 26.8 0.0 6 109 79 192 75 260 0.72 Protein of unknown function (DUF2974) Lipase_3 PF01764.25 142 pGCA_001717605_00063 - 511 1e-05 25.4 0.0 1 1 2.1e-08 4.6e-05 23.3 0.0 45 107 148 218 108 243 0.78 Lipase (class 3) DUF676 PF05057.14 219 pGCA_001717605_00063 - 511 0.0019 17.7 0.0 1 1 2.1e-06 0.0046 16.5 0.0 70 116 158 205 129 247 0.73 Putative serine esterase (DUF676) PGAP1 PF07819.13 231 pGCA_001717605_00063 - 511 0.0036 17.0 0.1 1 2 5e-05 0.11 12.2 0.0 69 116 148 193 144 201 0.76 PGAP1-like protein PGAP1 PF07819.13 231 pGCA_001717605_00063 - 511 0.0036 17.0 0.1 2 2 0.06 1.4e+02 2.1 0.2 27 83 269 326 247 340 0.76 PGAP1-like protein DUF4450 PF14614.6 217 pGCA_001717605_00063 - 511 0.016 14.8 0.2 1 2 2.9 6.5e+03 -3.5 0.0 156 173 340 357 330 359 0.71 Domain of unknown function (DUF4450) DUF4450 PF14614.6 217 pGCA_001717605_00063 - 511 0.016 14.8 0.2 2 2 2.1e-05 0.047 13.3 0.1 6 48 446 488 443 495 0.94 Domain of unknown function (DUF4450) UPF0227 PF05728.12 187 pGCA_001717605_00063 - 511 0.028 14.4 0.1 1 2 9.1e-05 0.2 11.6 0.0 48 80 157 189 133 196 0.80 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pGCA_001717605_00063 - 511 0.028 14.4 0.1 2 2 0.39 8.7e+02 -0.3 0.0 115 145 391 422 368 439 0.73 Uncharacterised protein family (UPF0227) PAF-AH_p_II PF03403.13 379 pGCA_001717605_00063 - 511 0.028 13.0 0.0 1 1 2.2e-05 0.05 12.1 0.0 185 244 120 184 94 210 0.77 Platelet-activating factor acetylhydrolase, isoform II Abhydrolase_6 PF12697.7 220 pGCA_001717605_00063 - 511 0.049 14.2 0.0 1 1 3.1e-05 0.069 13.7 0.0 49 86 148 189 103 236 0.62 Alpha/beta hydrolase family DUF2974 PF11187.8 224 pGCA_001717605_00064 - 202 0.00072 19.2 0.1 1 1 1.9e-07 0.0011 18.5 0.1 7 94 100 196 95 198 0.73 Protein of unknown function (DUF2974) DUF676 PF05057.14 219 pGCA_001717605_00064 - 202 0.044 13.3 0.0 1 1 1.4e-05 0.086 12.3 0.0 63 91 170 198 130 200 0.73 Putative serine esterase (DUF676) Lipase_3 PF01764.25 142 pGCA_001717605_00064 - 202 0.1 12.4 0.2 1 1 4.6e-05 0.28 11.1 0.1 50 75 172 196 121 197 0.77 Lipase (class 3) Put_DNA-bind_N PF06971.13 49 pGCA_001717605_00068 - 141 0.034 14.2 0.0 1 1 3.2e-06 0.058 13.4 0.0 11 34 4 27 3 30 0.94 Putative DNA-binding protein N-terminus AAA_31 PF13614.6 177 pGCA_001717605_00070 - 186 0.00011 22.2 0.6 1 2 2.4e-07 0.0014 18.6 0.1 3 26 2 25 1 31 0.90 AAA domain AAA_31 PF13614.6 177 pGCA_001717605_00070 - 186 0.00011 22.2 0.6 2 2 0.03 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pGCA_001717605_00070 - 186 0.0021 18.1 0.9 1 1 2.9e-06 0.017 15.2 0.9 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_001717605_00070 - 186 0.014 14.8 0.0 1 1 3.2e-06 0.019 14.4 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase RHH_7 PF16777.5 74 pGCA_001717605_00071 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_25 PF13481.6 194 pGCA_001717605_00072 - 597 4.8e-15 55.7 0.0 1 1 5.6e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pGCA_001717605_00072 - 597 0.0003 20.2 0.0 1 2 9.8e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_001717605_00072 - 597 0.0003 20.2 0.0 2 2 0.013 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_001717605_00072 - 597 0.0023 17.7 0.0 1 2 7.2e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_001717605_00072 - 597 0.0023 17.7 0.0 2 2 0.7 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pGCA_001717605_00072 - 597 0.0091 15.4 0.4 1 3 3.7e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 pGCA_001717605_00072 - 597 0.0091 15.4 0.4 2 3 0.81 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC ATPase PF06745.13 231 pGCA_001717605_00072 - 597 0.0091 15.4 0.4 3 3 2.1 4.2e+03 -3.2 0.1 64 122 377 434 373 452 0.51 KaiC AAA PF00004.29 132 pGCA_001717605_00072 - 597 0.021 15.2 0.5 1 3 0.00017 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_001717605_00072 - 597 0.021 15.2 0.5 2 3 0.33 6.7e+02 0.7 0.0 47 74 411 434 377 455 0.71 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_001717605_00072 - 597 0.021 15.2 0.5 3 3 4.5 9e+03 -3.0 0.0 23 49 495 523 475 527 0.69 ATPase family associated with various cellular activities (AAA) ApoC-I PF04691.12 61 pGCA_001717605_00072 - 597 0.16 11.9 3.3 1 3 0.0026 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pGCA_001717605_00072 - 597 0.16 11.9 3.3 2 3 0.22 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pGCA_001717605_00072 - 597 0.16 11.9 3.3 3 3 0.2 4e+02 1.0 0.1 7 23 519 535 516 541 0.76 Apolipoprotein C-I (ApoC-1) CbiA PF01656.23 128 pGCA_001717605_00072 - 597 0.24 11.4 2.2 1 1 0.00053 1.1 9.4 2.2 1 29 35 63 35 548 0.91 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pGCA_001717605_00072 - 597 0.7 9.5 5.5 1 2 0.0067 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pGCA_001717605_00072 - 597 0.7 9.5 5.5 2 2 0.0087 17 5.1 1.5 16 28 517 529 511 531 0.91 VASP tetramerisation domain DUF1947 PF09183.10 66 pGCA_001717605_00072 - 597 0.73 10.2 6.3 1 2 0.15 3e+02 1.8 0.2 23 46 245 269 237 271 0.78 Domain of unknown function (DUF1947) DUF1947 PF09183.10 66 pGCA_001717605_00072 - 597 0.73 10.2 6.3 2 2 0.00085 1.7 9.0 1.7 7 42 517 550 515 567 0.87 Domain of unknown function (DUF1947) HicA_toxin PF07927.12 58 pGCA_001717605_00073 - 67 6.1e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pGCA_001717605_00074 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 pGCA_001717605_00076 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 pGCA_001717605_00076 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 pGCA_001717605_00076 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) nec1 PF10379.9 184 pGCA_001717605_00077 - 70 0.036 13.6 0.0 1 1 2.2e-06 0.039 13.5 0.0 65 105 29 67 8 69 0.74 Virulence protein nec1 Toprim_3 PF13362.6 95 pGCA_001717605_00079 - 406 3.2e-08 33.8 0.0 1 1 1.7e-11 6.2e-08 32.9 0.0 3 93 270 374 268 376 0.87 Toprim domain Toprim_4 PF13662.6 89 pGCA_001717605_00079 - 406 0.12 12.9 0.1 1 1 7.1e-05 0.25 11.8 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pGCA_001717605_00079 - 406 0.12 13.0 3.6 1 2 0.037 1.3e+02 3.2 0.4 52 85 140 172 121 201 0.70 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_001717605_00079 - 406 0.12 13.0 3.6 2 2 0.00034 1.2 9.8 0.2 15 80 321 382 319 402 0.70 5'-3' exonuclease, C-terminal SAM fold Paz_1 PF18349.1 93 pGCA_001717605_00079 - 406 0.12 12.3 0.9 1 2 9.2e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Paz_1 PF18349.1 93 pGCA_001717605_00079 - 406 0.12 12.3 0.9 2 2 2.7 9.6e+03 -3.4 0.0 36 42 237 243 223 260 0.57 PAZ domain TSC21 PF15217.6 180 pGCA_001717605_00079 - 406 0.17 11.8 0.2 1 1 8.2e-05 0.29 11.0 0.2 38 86 145 193 129 208 0.83 TSC21 family CdvA PF18822.1 123 pGCA_001717605_00081 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 pGCA_001717605_00081 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 pGCA_001717605_00081 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 pGCA_001717605_00081 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 pGCA_001717605_00081 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 pGCA_001717605_00082 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_001717605_00082 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_001717605_00082 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pGCA_001717605_00082 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pGCA_001717605_00082 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_001717605_00082 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_001717605_00082 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pGCA_001717605_00082 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pGCA_001717605_00082 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 pGCA_001717605_00082 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pGCA_001717605_00082 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain Relaxase PF03432.14 242 pGCA_001717605_00083 - 462 3.7e-10 39.8 7.6 1 2 2.1e-14 3.7e-10 39.8 7.6 47 229 118 297 70 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_001717605_00083 - 462 3.7e-10 39.8 7.6 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain Peptidase_C39 PF03412.15 133 pGCA_001717605_00085 - 197 5e-18 65.2 0.0 1 1 1.1e-21 6.6e-18 64.8 0.0 2 124 33 162 32 176 0.81 Peptidase C39 family Peptidase_C70 PF12385.8 145 pGCA_001717605_00085 - 197 0.00011 22.2 0.0 1 1 2.7e-08 0.00016 21.7 0.0 11 131 37 147 20 158 0.78 Papain-like cysteine protease AvrRpt2 Peptidase_C39_2 PF13529.6 144 pGCA_001717605_00085 - 197 0.053 14.1 0.0 1 1 1.9e-05 0.11 13.0 0.0 6 143 36 143 31 144 0.72 Peptidase_C39 like family GramPos_pilinBB PF16569.5 115 pGCA_001717605_00088 - 236 0.016 16.0 3.9 1 2 2.1e-05 0.19 12.6 1.9 56 113 16 74 2 75 0.79 Gram-positive pilin backbone subunit 2, Cna-B-like domain GramPos_pilinBB PF16569.5 115 pGCA_001717605_00088 - 236 0.016 16.0 3.9 2 2 0.016 1.4e+02 3.3 0.0 23 66 113 157 95 188 0.77 Gram-positive pilin backbone subunit 2, Cna-B-like domain DUF2768 PF10966.8 58 pGCA_001717605_00088 - 236 0.052 14.0 0.6 1 1 1.2e-05 0.11 13.0 0.6 23 52 205 234 203 235 0.91 Protein of unknown function (DUF2768) SNF2_N PF00176.23 350 pGCA_001717605_00089 - 1932 2.6e-16 59.3 1.7 1 3 1.2e-19 4.4e-16 58.5 0.1 57 245 1018 1273 935 1314 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_001717605_00089 - 1932 2.6e-16 59.3 1.7 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_001717605_00089 - 1932 2.6e-16 59.3 1.7 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 pGCA_001717605_00089 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.2e+03 -3.4 0.2 54 75 649 690 638 782 0.55 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_001717605_00089 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_001717605_00089 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pGCA_001717605_00089 - 1932 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pGCA_001717605_00089 - 1932 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pGCA_001717605_00089 - 1932 7.6e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pGCA_001717605_00089 - 1932 7.6e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 pGCA_001717605_00089 - 1932 2.2e-05 24.9 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 372 472 370 475 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pGCA_001717605_00089 - 1932 2.2e-05 24.9 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 pGCA_001717605_00090 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 pGCA_001717605_00091 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pGCA_001717605_00091 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pGCA_001717605_00091 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_001717605_00091 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pGCA_001717605_00091 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pGCA_001717605_00091 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pGCA_001717605_00092 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pGCA_001717605_00092 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 pGCA_001717605_00093 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pGCA_001717605_00093 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pGCA_001717605_00093 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pGCA_001717605_00093 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pGCA_001717605_00093 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pGCA_001717605_00093 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 pGCA_001717605_00094 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pGCA_001717605_00094 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pGCA_001717605_00094 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pGCA_001717605_00094 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pGCA_001717605_00094 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pGCA_001717605_00094 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pGCA_001717605_00094 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pGCA_001717605_00094 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pGCA_001717605_00094 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 pGCA_001717605_00095 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pGCA_001717605_00095 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain CtsR_C PF17727.1 72 pGCA_001717605_00096 - 120 0.047 13.8 0.3 1 2 0.00025 4.4 7.5 0.0 3 38 25 60 22 67 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pGCA_001717605_00096 - 120 0.047 13.8 0.3 2 2 0.0022 40 4.4 0.0 28 48 68 88 65 102 0.85 CtsR C-terminal dimerization domain W2 PF02020.18 79 pGCA_001717605_00097 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pGCA_001717605_00097 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pGCA_001717605_00097 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain GTP_EFTU PF00009.27 194 pGCA_001717605_00100 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pGCA_001717605_00100 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pGCA_001717605_00100 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pGCA_001717605_00100 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pGCA_001717605_00100 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pGCA_001717605_00100 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pGCA_001717605_00100 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pGCA_001717605_00100 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pGCA_001717605_00100 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pGCA_001717605_00100 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 pGCA_001717605_00102 - 351 1.2e-05 25.3 2.3 1 1 3.6e-09 3.2e-05 23.8 2.3 3 133 208 334 206 344 0.67 PcfJ-like protein Intein_splicing PF14890.6 134 pGCA_001717605_00102 - 351 0.03 14.3 4.7 1 2 0.1 9.3e+02 -0.3 0.1 11 60 95 149 88 152 0.72 Intein splicing domain Intein_splicing PF14890.6 134 pGCA_001717605_00102 - 351 0.03 14.3 4.7 2 2 3.3e-06 0.03 14.3 1.1 37 125 195 322 161 330 0.74 Intein splicing domain Topoisom_bac PF01131.20 413 pGCA_001717605_00104 - 730 9e-97 324.7 8.0 1 1 1.2e-99 1.3e-96 324.2 8.0 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pGCA_001717605_00104 - 730 9.7e-12 45.0 0.1 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pGCA_001717605_00104 - 730 9.7e-12 45.0 0.1 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pGCA_001717605_00104 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pGCA_001717605_00104 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pGCA_001717605_00104 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_001717605_00104 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_001717605_00104 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pGCA_001717605_00104 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pGCA_001717605_00104 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pGCA_001717605_00104 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pGCA_001717605_00104 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pGCA_001717605_00104 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pGCA_001717605_00104 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain EF-hand_8 PF13833.6 55 pGCA_001717605_00104 - 730 0.052 13.4 0.2 1 2 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair EF-hand_8 PF13833.6 55 pGCA_001717605_00104 - 730 0.052 13.4 0.2 2 2 1.7 1.8e+03 -1.2 0.0 24 36 342 354 332 355 0.83 EF-hand domain pair zf-C2H2_4 PF13894.6 24 pGCA_001717605_00104 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pGCA_001717605_00104 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pGCA_001717605_00104 - 730 0.086 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pGCA_001717605_00104 - 730 0.086 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 pGCA_001717605_00104 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pGCA_001717605_00104 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pGCA_001717605_00104 - 730 0.38 11.0 3.0 1 3 1.9 2e+03 -1.0 0.0 26 47 362 383 354 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_001717605_00104 - 730 0.38 11.0 3.0 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_001717605_00104 - 730 0.38 11.0 3.0 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pGCA_001717605_00104 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pGCA_001717605_00104 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pGCA_001717605_00104 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_001717605_00104 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pGCA_001717605_00104 - 730 0.76 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pGCA_001717605_00104 - 730 0.76 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pGCA_001717605_00104 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pGCA_001717605_00104 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pGCA_001717605_00104 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pGCA_001717605_00104 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type DUF1461 PF07314.11 189 pGCA_001717605_00105 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) CdhD PF03599.16 386 pGCA_001717605_00106 - 206 0.004 15.9 0.0 1 1 7.2e-07 0.0064 15.2 0.0 283 358 11 87 2 96 0.88 CO dehydrogenase/acetyl-CoA synthase delta subunit Redoxin PF08534.10 147 pGCA_001717605_00106 - 206 0.056 13.2 0.7 1 2 0.065 5.9e+02 0.1 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pGCA_001717605_00106 - 206 0.056 13.2 0.7 2 2 3.9e-05 0.35 10.6 0.1 49 76 144 173 138 191 0.79 Redoxin PRELI PF04707.14 157 pGCA_001717605_00107 - 265 0.044 13.6 0.3 1 2 0.33 2e+03 -1.5 0.1 94 133 10 45 4 72 0.50 PRELI-like family PRELI PF04707.14 157 pGCA_001717605_00107 - 265 0.044 13.6 0.3 2 2 7.4e-06 0.044 13.6 0.3 96 155 83 147 78 149 0.87 PRELI-like family TACC_C PF05010.14 201 pGCA_001717605_00107 - 265 1.3 8.8 9.6 1 2 0.00056 3.3 7.4 8.5 14 124 2 111 1 135 0.79 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 pGCA_001717605_00107 - 265 1.3 8.8 9.6 2 2 0.053 3.2e+02 1.0 1.1 8 45 100 139 94 148 0.70 Transforming acidic coiled-coil-containing protein (TACC), C-terminal IFT20 PF14931.6 119 pGCA_001717605_00107 - 265 4.9 7.3 10.2 1 3 0.081 4.9e+02 0.9 0.3 20 47 18 45 2 56 0.57 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 pGCA_001717605_00107 - 265 4.9 7.3 10.2 2 3 0.00026 1.5 9.0 0.5 25 53 89 117 81 120 0.91 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 pGCA_001717605_00107 - 265 4.9 7.3 10.2 3 3 0.027 1.6e+02 2.4 0.3 22 43 119 140 115 164 0.78 Intraflagellar transport complex B, subunit 20 TrbM PF07424.11 156 pGCA_001717605_00108 - 252 3.9e-38 130.8 2.1 1 1 5.6e-42 5e-38 130.5 2.1 1 154 25 190 25 192 0.88 TrbM HpaB PF03241.13 202 pGCA_001717605_00108 - 252 0.17 10.9 0.1 1 2 0.047 4.2e+02 -0.1 0.0 20 39 17 36 4 37 0.76 4-hydroxyphenylacetate 3-hydroxylase C terminal HpaB PF03241.13 202 pGCA_001717605_00108 - 252 0.17 10.9 0.1 2 2 0.00011 1 8.4 0.0 56 101 116 161 102 164 0.88 4-hydroxyphenylacetate 3-hydroxylase C terminal Cag12 PF13117.6 97 pGCA_001717605_00109 - 143 2.9e-16 59.8 0.3 1 1 4.1e-20 3.7e-16 59.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pGCA_001717605_00109 - 143 0.078 12.8 0.4 1 1 2.3e-05 0.2 11.4 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) T4SS-DNA_transf PF02534.14 469 pGCA_001717605_00110 - 567 6.8e-104 348.3 0.1 1 1 1.5e-107 9.2e-104 347.8 0.1 3 460 58 527 46 535 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_001717605_00110 - 567 3.1e-24 85.3 0.0 1 1 1e-27 6.1e-24 84.4 0.0 2 125 370 492 369 493 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pGCA_001717605_00110 - 567 2.6e-15 56.3 0.0 1 2 1.1e-06 0.0065 15.4 0.0 41 157 113 241 89 262 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_001717605_00110 - 567 2.6e-15 56.3 0.0 2 2 8.6e-14 5.1e-10 38.8 0.0 187 369 311 495 274 507 0.81 Type IV secretion-system coupling protein DNA-binding domain T2SSE PF00437.20 273 pGCA_001717605_00111 - 335 7.7e-55 185.9 0.0 1 1 1.5e-57 8.9e-55 185.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pGCA_001717605_00111 - 335 7.4e-05 23.3 0.0 1 1 2.6e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_001717605_00111 - 335 0.00012 21.6 0.0 1 1 3e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pGCA_001717605_00111 - 335 0.00028 20.5 0.0 1 1 8.8e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pGCA_001717605_00111 - 335 0.0014 18.9 0.0 1 1 4.5e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 pGCA_001717605_00111 - 335 0.0014 18.4 0.0 1 1 3.9e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pGCA_001717605_00111 - 335 0.0023 17.7 0.0 1 1 9.2e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pGCA_001717605_00111 - 335 0.0035 17.3 0.0 1 1 1.2e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pGCA_001717605_00111 - 335 0.0055 15.7 0.0 1 1 1.3e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pGCA_001717605_00111 - 335 0.0073 16.2 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pGCA_001717605_00111 - 335 0.0087 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pGCA_001717605_00111 - 335 0.0092 15.9 0.0 1 1 2.3e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pGCA_001717605_00111 - 335 0.019 15.1 0.0 1 1 6.1e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain AAA_14 PF13173.6 131 pGCA_001717605_00111 - 335 0.02 14.9 0.1 1 2 3 1.8e+03 -1.1 0.0 73 104 35 65 15 73 0.83 AAA domain AAA_14 PF13173.6 131 pGCA_001717605_00111 - 335 0.02 14.9 0.1 2 2 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain TrwB_AAD_bind PF10412.9 386 pGCA_001717605_00111 - 335 0.021 13.8 0.0 1 1 5.9e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.6 61 pGCA_001717605_00111 - 335 0.024 14.4 0.0 1 1 8.8e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain ResIII PF04851.15 171 pGCA_001717605_00111 - 335 0.026 14.5 0.0 1 1 9.1e-05 0.053 13.5 0.0 5 50 147 186 132 244 0.73 Type III restriction enzyme, res subunit Sigma54_activat PF00158.26 168 pGCA_001717605_00111 - 335 0.026 14.2 0.0 1 1 9.3e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pGCA_001717605_00111 - 335 0.031 13.7 0.0 1 1 0.0001 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein ATP_bind_1 PF03029.17 241 pGCA_001717605_00111 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 pGCA_001717605_00111 - 335 0.045 14.1 0.0 1 1 0.00018 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 pGCA_001717605_00111 - 335 0.045 13.0 0.0 1 1 0.00013 0.077 12.3 0.0 14 49 158 193 146 207 0.84 Zeta toxin PRK PF00485.18 197 pGCA_001717605_00111 - 335 0.057 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pGCA_001717605_00111 - 335 0.065 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pGCA_001717605_00111 - 335 0.074 13.4 0.0 1 1 0.00019 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pGCA_001717605_00111 - 335 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pGCA_001717605_00111 - 335 0.1 12.6 0.5 1 1 0.00042 0.25 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 pGCA_001717605_00111 - 335 0.11 12.4 0.1 1 1 0.0004 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pGCA_001717605_00111 - 335 0.15 11.7 0.0 1 1 0.00041 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pGCA_001717605_00111 - 335 0.15 11.8 0.0 1 1 0.00042 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pGCA_001717605_00111 - 335 0.44 11.0 4.2 1 2 2.5 1.5e+03 -0.5 0.1 68 130 84 150 40 162 0.62 AAA domain AAA_23 PF13476.6 200 pGCA_001717605_00111 - 335 0.44 11.0 4.2 2 2 0.00057 0.33 11.4 1.4 22 37 163 178 151 184 0.88 AAA domain TrbI PF03743.14 187 pGCA_001717605_00112 - 393 7.4e-48 162.9 0.1 1 2 0.6 5.4e+03 -3.0 0.4 123 155 136 168 119 173 0.53 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pGCA_001717605_00112 - 393 7.4e-48 162.9 0.1 2 2 8.2e-52 7.4e-48 162.9 0.1 1 187 196 377 196 377 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pGCA_001717605_00112 - 393 0.044 12.9 0.1 1 1 7.7e-06 0.069 12.2 0.1 29 81 322 374 303 379 0.85 HaeIII restriction endonuclease CagX PF03524.15 211 pGCA_001717605_00113 - 297 4.5e-56 189.9 2.1 1 1 7.9e-60 7.1e-56 189.3 2.1 2 211 32 272 31 272 0.92 Conjugal transfer protein TraE PF05309.11 182 pGCA_001717605_00113 - 297 0.021 14.2 0.1 1 1 4.4e-06 0.04 13.3 0.1 107 171 90 155 87 162 0.83 TraE protein VirB8 PF04335.13 214 pGCA_001717605_00114 - 219 1.6e-52 178.4 0.4 1 1 2e-56 1.8e-52 178.3 0.4 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pGCA_001717605_00114 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 pGCA_001717605_00115 - 54 0.034 13.1 1.0 1 1 5.2e-06 0.031 13.2 1.0 3 25 3 24 1 53 0.80 Treponema clustered lipoprotein (Trep_dent_lipo) La_HTH_kDCL PF18177.1 90 pGCA_001717605_00115 - 54 0.19 12.0 0.0 1 1 3.6e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain PsbT PF01405.17 29 pGCA_001717605_00115 - 54 1.1 9.1 5.2 1 1 0.00027 1.6 8.6 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 pGCA_001717605_00116 - 331 2.1e-30 106.1 33.3 1 2 3.5e-34 2.1e-30 106.1 33.3 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pGCA_001717605_00116 - 331 2.1e-30 106.1 33.3 2 2 0.75 4.5e+03 -2.8 0.1 84 84 289 289 259 327 0.50 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pGCA_001717605_00116 - 331 0.065 13.0 0.9 1 2 0.4 2.4e+03 -1.6 0.1 39 51 70 82 61 114 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pGCA_001717605_00116 - 331 0.065 13.0 0.9 2 2 3.6e-05 0.22 11.4 0.1 37 81 243 287 222 299 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 pGCA_001717605_00116 - 331 0.17 11.9 0.0 1 1 5.1e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) T4SS PF07996.11 197 pGCA_001717605_00117 - 329 1.8e-28 100.3 13.3 1 1 5.5e-32 2.5e-28 99.9 13.3 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pGCA_001717605_00117 - 329 0.0035 17.5 0.5 1 2 0.27 1.2e+03 -0.3 0.0 30 54 134 158 120 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pGCA_001717605_00117 - 329 0.0035 17.5 0.5 2 2 4.7e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 pGCA_001717605_00117 - 329 0.017 15.7 0.9 1 2 1.3 6e+03 -2.1 0.0 55 70 124 139 101 163 0.57 von Willebrand factor type A domain VWA_2 PF13519.6 107 pGCA_001717605_00117 - 329 0.017 15.7 0.9 2 2 8.1e-06 0.036 14.7 0.2 31 84 208 270 197 307 0.84 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 pGCA_001717605_00117 - 329 0.5 11.1 11.4 1 2 0.042 1.9e+02 2.7 0.8 49 135 108 145 95 182 0.47 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pGCA_001717605_00117 - 329 0.5 11.1 11.4 2 2 9.1e-05 0.41 11.3 4.5 49 116 225 306 205 328 0.68 Apoptosis antagonizing transcription factor IF2_N PF04760.15 54 pGCA_001717605_00118 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pGCA_001717605_00118 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pGCA_001717605_00118 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pGCA_001717605_00118 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pGCA_001717605_00118 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pGCA_001717605_00118 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pGCA_001717605_00118 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 pGCA_001717605_00119 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family PBECR2 PF18810.1 119 pGCA_001717605_00120 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 Phage_pRha PF09669.10 88 pGCA_001717605_00121 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 pGCA_001717605_00121 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 pGCA_001717605_00121 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) CagE_TrbE_VirB PF03135.14 206 pGCA_001717605_00122 - 922 6.9e-51 173.3 0.4 1 1 1.8e-54 1.6e-50 172.1 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pGCA_001717605_00122 - 922 3.6e-21 75.2 0.8 1 1 6.9e-25 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein TrbC PF04956.13 99 pGCA_001717605_00123 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pGCA_001717605_00123 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pGCA_001717605_00125 - 135 0.00056 20.0 0.0 1 1 8.6e-08 0.0015 18.6 0.0 5 53 8 71 5 106 0.81 CRISPR associated protein Cas2 Resolvase PF00239.21 146 pGCA_001717605_00126 - 204 1.4e-33 116.0 0.8 1 1 3.3e-37 2e-33 115.6 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_Mga PF08280.11 60 pGCA_001717605_00126 - 204 0.03 14.4 4.9 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_001717605_00126 - 204 0.03 14.4 4.9 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_001717605_00126 - 204 0.03 14.4 4.9 3 3 0.0097 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain HTH_38 PF13936.6 44 pGCA_001717605_00126 - 204 0.042 13.6 0.8 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_001717605_00126 - 204 0.042 13.6 0.8 2 3 0.00081 4.9 7.0 0.1 2 34 117 150 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_001717605_00126 - 204 0.042 13.6 0.8 3 3 0.0074 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain RepL PF05732.11 165 pGCA_001717605_00127 - 107 5.2e-17 61.8 0.0 1 1 3.7e-20 6e-17 61.6 0.0 40 135 2 100 1 105 0.89 Firmicute plasmid replication protein (RepL) HTH_5 PF01022.20 47 pGCA_001717605_00127 - 107 6.3e-05 22.8 0.0 1 1 6.3e-08 0.0001 22.1 0.0 17 47 42 72 41 72 0.94 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 68 pGCA_001717605_00127 - 107 0.00012 22.0 0.0 1 1 9.4e-08 0.00015 21.6 0.0 19 56 38 76 25 83 0.76 Crp-like helix-turn-helix domain DUF4423 PF14394.6 168 pGCA_001717605_00127 - 107 0.00096 18.9 0.0 1 1 7e-07 0.0011 18.7 0.0 37 84 41 86 32 104 0.85 Domain of unknown function (DUF4423) HTH_11 PF08279.12 55 pGCA_001717605_00127 - 107 0.0036 17.2 0.0 1 1 3.3e-06 0.0053 16.7 0.0 17 50 42 74 27 78 0.86 HTH domain MarR PF01047.22 59 pGCA_001717605_00127 - 107 0.0037 17.2 0.0 1 1 3.3e-06 0.0054 16.6 0.0 19 52 42 75 32 76 0.90 MarR family MarR_2 PF12802.7 62 pGCA_001717605_00127 - 107 0.0046 16.8 0.0 1 1 3.7e-06 0.0061 16.4 0.0 23 56 42 75 22 76 0.80 MarR family HTH_20 PF12840.7 61 pGCA_001717605_00127 - 107 0.0048 16.9 0.0 1 1 4.2e-06 0.0068 16.4 0.0 26 59 42 75 41 77 0.93 Helix-turn-helix domain Rrf2 PF02082.20 83 pGCA_001717605_00127 - 107 0.023 15.0 0.0 1 1 2.1e-05 0.035 14.5 0.0 8 59 22 74 17 83 0.80 Transcriptional regulator TrmB PF01978.19 68 pGCA_001717605_00127 - 107 0.028 14.3 0.0 1 1 2.5e-05 0.04 13.8 0.0 23 58 41 76 40 87 0.90 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.10 121 pGCA_001717605_00127 - 107 0.038 13.9 0.1 1 1 2.4e-05 0.038 13.9 0.1 52 108 39 95 2 106 0.83 N-terminal phage replisome organiser (Phage_rep_org_N) CRISPR_Cas2 PF09827.9 76 pGCA_001717605_00128 - 95 1.6e-11 44.2 0.1 1 1 2.3e-15 2e-11 43.9 0.1 2 73 1 86 1 88 0.80 CRISPR associated protein Cas2 Citrate_ly_lig PF08218.11 182 pGCA_001717605_00128 - 95 0.093 12.4 0.0 1 1 1.2e-05 0.11 12.2 0.0 83 153 15 88 10 94 0.82 Citrate lyase ligase C-terminal domain TIR_2 PF13676.6 118 pGCA_001717605_00129 - 408 2.1e-05 25.1 0.1 1 1 1.4e-08 8.4e-05 23.2 0.1 1 83 269 354 269 385 0.79 TIR domain DUF1863 PF08937.11 130 pGCA_001717605_00129 - 408 0.012 16.0 1.2 1 3 0.16 9.6e+02 0.1 3.0 16 71 90 143 62 146 0.73 MTH538 TIR-like domain (DUF1863) DUF1863 PF08937.11 130 pGCA_001717605_00129 - 408 0.012 16.0 1.2 2 3 0.74 4.4e+03 -2.1 0.1 6 38 209 232 207 265 0.49 MTH538 TIR-like domain (DUF1863) DUF1863 PF08937.11 130 pGCA_001717605_00129 - 408 0.012 16.0 1.2 3 3 2e-06 0.012 16.0 1.2 1 103 267 358 267 363 0.69 MTH538 TIR-like domain (DUF1863) T_Ag_DNA_bind PF02217.16 94 pGCA_001717605_00129 - 408 2.7 8.6 7.4 1 2 2.9 1.7e+04 -3.6 0.3 32 48 88 105 84 120 0.48 Origin of replication binding protein T_Ag_DNA_bind PF02217.16 94 pGCA_001717605_00129 - 408 2.7 8.6 7.4 2 2 3.2e-05 0.19 12.3 1.8 13 83 176 245 168 247 0.92 Origin of replication binding protein DUF1899 PF08953.11 66 pGCA_001717605_00130 - 138 0.095 12.6 0.1 1 2 0.43 3.8e+03 -2.2 0.0 38 47 46 55 39 56 0.77 Domain of unknown function (DUF1899) DUF1899 PF08953.11 66 pGCA_001717605_00130 - 138 0.095 12.6 0.1 2 2 3e-05 0.27 11.1 0.0 21 42 77 98 71 100 0.92 Domain of unknown function (DUF1899) XhlA PF10779.9 67 pGCA_001717605_00130 - 138 0.12 12.6 1.7 1 1 2.7e-05 0.25 11.6 1.7 22 61 2 45 1 47 0.87 Haemolysin XhlA AAA_25 PF13481.6 194 pGCA_001717605_00131 - 599 5.2e-16 58.8 0.0 1 1 4.4e-19 1.1e-15 57.7 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pGCA_001717605_00131 - 599 0.00056 19.3 0.0 1 1 1.7e-06 0.0044 16.4 0.0 16 111 30 130 25 180 0.85 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_001717605_00131 - 599 0.0015 18.3 0.0 1 2 9.4e-06 0.024 14.4 0.0 46 85 32 71 21 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_001717605_00131 - 599 0.0015 18.3 0.0 2 2 0.15 3.9e+02 0.7 0.0 96 118 108 130 98 168 0.75 IstB-like ATP binding protein AAA_24 PF13479.6 197 pGCA_001717605_00131 - 599 0.0044 16.8 0.0 1 1 3.7e-06 0.0095 15.7 0.0 5 91 36 144 32 206 0.72 AAA domain ATPase PF06745.13 231 pGCA_001717605_00131 - 599 0.0061 15.9 0.1 1 2 1.8e-05 0.046 13.1 0.0 16 71 30 84 23 214 0.76 KaiC ATPase PF06745.13 231 pGCA_001717605_00131 - 599 0.0061 15.9 0.1 2 2 0.65 1.7e+03 -1.9 0.0 137 160 329 352 322 358 0.84 KaiC AAA PF00004.29 132 pGCA_001717605_00131 - 599 0.092 13.2 0.2 1 2 0.00054 1.4 9.4 0.0 2 105 37 166 36 177 0.57 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_001717605_00131 - 599 0.092 13.2 0.2 2 2 0.35 9e+02 0.3 0.0 57 74 417 436 383 457 0.76 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pGCA_001717605_00131 - 599 0.2 11.7 1.5 1 1 0.00027 0.69 10.0 1.4 1 29 35 63 35 535 0.93 CobQ/CobB/MinD/ParA nucleotide binding domain HicA_toxin PF07927.12 58 pGCA_001717605_00132 - 67 6.1e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pGCA_001717605_00133 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system TRADD_N PF09034.10 112 pGCA_001717605_00134 - 217 0.033 14.2 0.0 1 1 6.1e-06 0.055 13.5 0.0 21 91 58 127 49 135 0.86 TRADD, N-terminal domain Peptidase_M4_C PF02868.15 168 pGCA_001717605_00134 - 217 0.18 11.7 1.3 1 3 4.2e-05 0.37 10.6 0.1 104 150 13 59 5 63 0.90 Thermolysin metallopeptidase, alpha-helical domain Peptidase_M4_C PF02868.15 168 pGCA_001717605_00134 - 217 0.18 11.7 1.3 2 3 0.6 5.3e+03 -2.9 0.0 123 137 88 102 80 114 0.76 Thermolysin metallopeptidase, alpha-helical domain Peptidase_M4_C PF02868.15 168 pGCA_001717605_00134 - 217 0.18 11.7 1.3 3 3 0.33 2.9e+03 -2.0 0.1 103 126 107 130 92 145 0.64 Thermolysin metallopeptidase, alpha-helical domain AAA_31 PF13614.6 177 pGCA_001717605_00135 - 186 6.3e-05 23.0 0.6 1 2 2.1e-07 0.0013 18.7 0.1 3 26 2 25 1 37 0.90 AAA domain AAA_31 PF13614.6 177 pGCA_001717605_00135 - 186 6.3e-05 23.0 0.6 2 2 0.015 90 2.9 0.0 116 157 52 93 23 106 0.69 AAA domain CbiA PF01656.23 128 pGCA_001717605_00135 - 186 0.0021 18.1 0.8 1 1 2.8e-06 0.017 15.2 0.8 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_001717605_00135 - 186 0.02 14.4 0.0 1 1 4.5e-06 0.027 13.9 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase RHH_7 PF16777.5 74 pGCA_001717605_00136 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG NYN PF01936.18 147 pGCA_001717605_00139 - 180 1.1e-09 39.0 0.0 1 1 2e-13 1.2e-09 38.8 0.0 60 123 74 146 15 161 0.80 NYN domain Peroxin-22 PF12827.7 113 pGCA_001717605_00139 - 180 0.004 17.0 0.6 1 1 1.3e-06 0.0079 16.1 0.6 25 105 81 162 46 169 0.76 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 pGCA_001717605_00139 - 180 0.029 15.0 0.0 1 1 8.3e-06 0.049 14.2 0.0 61 103 100 142 77 142 0.87 PIN domain DUF2400 PF09674.10 227 pGCA_001717605_00140 - 217 0.26 11.2 4.0 1 2 0.0095 1.7e+02 2.0 0.1 38 75 49 86 42 96 0.78 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pGCA_001717605_00140 - 217 0.26 11.2 4.0 2 2 3.1e-05 0.56 10.2 0.8 25 110 96 181 92 209 0.74 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pGCA_001717605_00141 - 406 3.2e-08 33.8 0.0 1 1 1.7e-11 6.2e-08 32.9 0.0 3 93 270 374 268 376 0.87 Toprim domain Toprim_4 PF13662.6 89 pGCA_001717605_00141 - 406 0.12 12.9 0.1 1 1 7.1e-05 0.25 11.8 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pGCA_001717605_00141 - 406 0.12 13.0 3.6 1 2 0.037 1.3e+02 3.2 0.4 52 85 140 172 121 201 0.70 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_001717605_00141 - 406 0.12 13.0 3.6 2 2 0.00034 1.2 9.8 0.2 15 80 321 382 319 402 0.70 5'-3' exonuclease, C-terminal SAM fold Paz_1 PF18349.1 93 pGCA_001717605_00141 - 406 0.12 12.3 0.9 1 2 9.2e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Paz_1 PF18349.1 93 pGCA_001717605_00141 - 406 0.12 12.3 0.9 2 2 2.7 9.6e+03 -3.4 0.0 36 42 237 243 223 260 0.57 PAZ domain TSC21 PF15217.6 180 pGCA_001717605_00141 - 406 0.17 11.8 0.2 1 1 8.2e-05 0.29 11.0 0.2 38 86 145 193 129 208 0.83 TSC21 family CitMHS PF03600.16 300 pGCA_001717605_00147 - 208 0.014 14.6 0.6 1 1 4.4e-06 0.016 14.4 0.6 147 214 4 101 1 114 0.80 Citrate transporter Yip1 PF04893.17 172 pGCA_001717605_00147 - 208 0.27 10.9 6.3 1 1 0.00011 0.4 10.4 6.3 65 120 7 68 2 75 0.84 Yip1 domain Spo7 PF03907.13 221 pGCA_001717605_00147 - 208 0.46 9.9 7.7 1 1 0.00021 0.75 9.2 7.7 33 93 16 71 12 178 0.72 Spo7-like protein DUF3810 PF12725.7 310 pGCA_001717605_00147 - 208 0.68 9.2 12.4 1 1 0.00023 0.82 8.9 12.4 19 86 8 75 1 177 0.60 Protein of unknown function (DUF3810) DHHC PF01529.20 134 pGCA_001717605_00147 - 208 8.2 6.5 12.2 1 1 0.0043 15 5.7 12.2 47 112 7 69 3 96 0.69 DHHC palmitoyltransferase CitMHS PF03600.16 300 pGCA_001717605_00149 - 208 0.014 14.6 0.6 1 1 4.4e-06 0.016 14.4 0.6 147 214 4 101 1 114 0.80 Citrate transporter Yip1 PF04893.17 172 pGCA_001717605_00149 - 208 0.27 10.9 6.3 1 1 0.00011 0.4 10.4 6.3 65 120 7 68 2 75 0.84 Yip1 domain Spo7 PF03907.13 221 pGCA_001717605_00149 - 208 0.46 9.9 7.7 1 1 0.00021 0.75 9.2 7.7 33 93 16 71 12 178 0.72 Spo7-like protein DUF3810 PF12725.7 310 pGCA_001717605_00149 - 208 0.68 9.2 12.4 1 1 0.00023 0.82 8.9 12.4 19 86 8 75 1 177 0.60 Protein of unknown function (DUF3810) DHHC PF01529.20 134 pGCA_001717605_00149 - 208 8.2 6.5 12.2 1 1 0.0043 15 5.7 12.2 47 112 7 69 3 96 0.69 DHHC palmitoyltransferase DUF3344 PF11824.8 279 pGCA_001717605_00151 - 227 0.087 12.4 0.5 1 1 7.3e-06 0.13 11.8 0.5 117 171 136 194 128 218 0.86 Protein of unknown function (DUF3344) DUF5013 PF16405.5 148 pGCA_001717605_00153 - 506 0.0095 16.2 0.0 1 2 8.9e-06 0.08 13.2 0.0 70 105 222 258 198 277 0.87 Domain of unknown function (DUF5013) DUF5013 PF16405.5 148 pGCA_001717605_00153 - 506 0.0095 16.2 0.0 2 2 0.18 1.6e+03 -0.7 0.0 18 42 408 435 395 473 0.74 Domain of unknown function (DUF5013) AMPK1_CBM PF16561.5 85 pGCA_001717605_00153 - 506 0.088 13.0 0.0 1 1 4.5e-05 0.41 10.9 0.0 21 56 201 237 199 248 0.81 Glycogen recognition site of AMP-activated protein kinase Ribophorin_II PF05817.14 631 pGCA_001717605_00154 - 165 1.4 7.4 7.7 1 1 0.00011 2 6.9 7.7 544 593 18 70 16 77 0.85 Oligosaccharyltransferase subunit Ribophorin II SseC PF04888.12 317 pGCA_001717605_00157 - 1311 0.004 16.8 0.2 1 1 3e-06 0.014 15.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family ThrE PF06738.12 241 pGCA_001717605_00157 - 1311 0.014 14.8 0.8 1 1 7.9e-06 0.036 13.4 0.8 90 179 209 300 201 311 0.78 Putative threonine/serine exporter Hormone_2 PF00123.20 28 pGCA_001717605_00157 - 1311 0.036 14.0 0.1 1 1 3.5e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone APOBEC_C PF05240.14 78 pGCA_001717605_00157 - 1311 0.062 13.3 0.4 1 1 6.9e-05 0.31 11.0 0.4 26 76 766 819 755 821 0.85 APOBEC-like C-terminal domain Ank_3 PF13606.6 31 pGCA_001717605_00159 - 312 3.6e-09 36.1 0.2 1 4 0.015 55 4.8 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001717605_00159 - 312 3.6e-09 36.1 0.2 2 4 0.026 92 4.1 0.0 10 29 142 160 134 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001717605_00159 - 312 3.6e-09 36.1 0.2 3 4 3.6e-06 0.013 16.0 0.0 2 30 168 195 167 196 0.94 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001717605_00159 - 312 3.6e-09 36.1 0.2 4 4 0.01 37 5.3 0.0 4 30 208 234 205 235 0.86 Ankyrin repeat Ank_2 PF12796.7 83 pGCA_001717605_00159 - 312 4.6e-08 33.5 0.0 1 2 0.54 1.9e+03 -0.5 0.0 4 18 74 92 70 122 0.55 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pGCA_001717605_00159 - 312 4.6e-08 33.5 0.0 2 2 8.4e-11 3e-07 30.9 0.0 5 80 142 234 138 237 0.78 Ankyrin repeats (3 copies) Ank PF00023.30 32 pGCA_001717605_00159 - 312 0.00033 21.0 0.0 1 3 0.016 57 4.4 0.0 10 26 142 159 130 165 0.79 Ankyrin repeat Ank PF00023.30 32 pGCA_001717605_00159 - 312 0.00033 21.0 0.0 2 3 0.0043 15 6.2 0.0 3 31 169 198 168 199 0.85 Ankyrin repeat Ank PF00023.30 32 pGCA_001717605_00159 - 312 0.00033 21.0 0.0 3 3 0.0054 19 5.9 0.0 15 28 220 234 206 237 0.70 Ankyrin repeat Ank_5 PF13857.6 56 pGCA_001717605_00159 - 312 0.0019 18.5 0.3 1 4 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001717605_00159 - 312 0.0019 18.5 0.3 2 4 0.00043 1.5 9.2 0.0 23 54 141 173 139 174 0.92 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001717605_00159 - 312 0.0019 18.5 0.3 3 4 8.5e-06 0.03 14.6 0.0 1 48 153 200 153 202 0.93 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001717605_00159 - 312 0.0019 18.5 0.3 4 4 2.5 9.1e+03 -2.8 0.0 34 53 225 242 221 243 0.56 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001717605_00159 - 312 0.0027 18.3 0.1 1 3 0.83 3e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001717605_00159 - 312 0.0027 18.3 0.1 2 3 4.6e-05 0.17 12.5 0.0 13 55 146 188 133 188 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001717605_00159 - 312 0.0027 18.3 0.1 3 3 0.11 3.9e+02 1.8 0.0 4 28 209 234 207 243 0.79 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 pGCA_001717605_00160 - 567 1.6e-07 31.5 0.0 1 2 3 1.8e+04 -5.2 5.9 25 58 343 376 306 392 0.55 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pGCA_001717605_00160 - 567 1.6e-07 31.5 0.0 2 2 2.7e-11 1.6e-07 31.5 0.0 13 84 416 489 397 491 0.81 Restriction endonuclease fold toxin 7 DUF2239 PF09998.9 184 pGCA_001717605_00160 - 567 8.1 6.2 10.9 1 2 0.00026 1.6 8.5 0.6 23 71 46 92 38 103 0.74 Uncharacterized protein conserved in bacteria (DUF2239) DUF2239 PF09998.9 184 pGCA_001717605_00160 - 567 8.1 6.2 10.9 2 2 0.066 3.9e+02 0.7 4.1 4 67 259 324 257 429 0.82 Uncharacterized protein conserved in bacteria (DUF2239) DUF4637 PF15470.6 166 pGCA_001717605_00160 - 567 9.9 5.9 8.5 1 2 0.35 2.1e+03 -1.7 1.7 34 49 78 93 49 130 0.55 Domain of unknown function (DUF4637) DUF4637 PF15470.6 166 pGCA_001717605_00160 - 567 9.9 5.9 8.5 2 2 8.1e-05 0.49 10.1 0.7 17 88 357 428 342 436 0.77 Domain of unknown function (DUF4637) Ank_3 PF13606.6 31 pGCA_001717605_00161 - 312 3.6e-09 36.1 0.2 1 4 0.015 55 4.8 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001717605_00161 - 312 3.6e-09 36.1 0.2 2 4 0.026 92 4.1 0.0 10 29 142 160 134 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001717605_00161 - 312 3.6e-09 36.1 0.2 3 4 3.6e-06 0.013 16.0 0.0 2 30 168 195 167 196 0.94 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001717605_00161 - 312 3.6e-09 36.1 0.2 4 4 0.01 37 5.3 0.0 4 30 208 234 205 235 0.86 Ankyrin repeat Ank_2 PF12796.7 83 pGCA_001717605_00161 - 312 4.6e-08 33.5 0.0 1 2 0.54 1.9e+03 -0.5 0.0 4 18 74 92 70 122 0.55 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pGCA_001717605_00161 - 312 4.6e-08 33.5 0.0 2 2 8.4e-11 3e-07 30.9 0.0 5 80 142 234 138 237 0.78 Ankyrin repeats (3 copies) Ank PF00023.30 32 pGCA_001717605_00161 - 312 0.00033 21.0 0.0 1 3 0.016 57 4.4 0.0 10 26 142 159 130 165 0.79 Ankyrin repeat Ank PF00023.30 32 pGCA_001717605_00161 - 312 0.00033 21.0 0.0 2 3 0.0043 15 6.2 0.0 3 31 169 198 168 199 0.85 Ankyrin repeat Ank PF00023.30 32 pGCA_001717605_00161 - 312 0.00033 21.0 0.0 3 3 0.0054 19 5.9 0.0 15 28 220 234 206 237 0.70 Ankyrin repeat Ank_5 PF13857.6 56 pGCA_001717605_00161 - 312 0.0019 18.5 0.3 1 4 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001717605_00161 - 312 0.0019 18.5 0.3 2 4 0.00043 1.5 9.2 0.0 23 54 141 173 139 174 0.92 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001717605_00161 - 312 0.0019 18.5 0.3 3 4 8.5e-06 0.03 14.6 0.0 1 48 153 200 153 202 0.93 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001717605_00161 - 312 0.0019 18.5 0.3 4 4 2.5 9.1e+03 -2.8 0.0 34 53 225 242 221 243 0.56 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001717605_00161 - 312 0.0027 18.3 0.1 1 3 0.83 3e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001717605_00161 - 312 0.0027 18.3 0.1 2 3 4.6e-05 0.17 12.5 0.0 13 55 146 188 133 188 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001717605_00161 - 312 0.0027 18.3 0.1 3 3 0.11 3.9e+02 1.8 0.0 4 28 209 234 207 243 0.79 Ankyrin repeats (many copies) Ntox24 PF15529.6 97 pGCA_001717605_00164 - 318 0.0021 18.3 0.8 1 2 0.39 7e+03 -2.6 0.0 26 45 180 201 159 205 0.54 Bacterial toxin 24 Ntox24 PF15529.6 97 pGCA_001717605_00164 - 318 0.0021 18.3 0.8 2 2 2.2e-07 0.0039 17.5 0.1 5 93 228 301 210 305 0.79 Bacterial toxin 24 CobN-Mg_chel PF02514.16 1089 pGCA_001717605_00165 - 128 0.16 9.7 0.0 1 1 1e-05 0.19 9.5 0.0 299 369 36 100 24 109 0.71 CobN/Magnesium Chelatase LPD7 PF18821.1 94 pGCA_001717605_00166 - 184 0.0092 16.1 0.4 1 2 0.0018 11 6.2 0.1 19 80 45 110 19 121 0.60 Large polyvalent protein-associated domain 7 LPD7 PF18821.1 94 pGCA_001717605_00166 - 184 0.0092 16.1 0.4 2 2 0.00051 3 8.0 0.1 35 65 124 157 114 161 0.78 Large polyvalent protein-associated domain 7 Imm59 PF15597.6 100 pGCA_001717605_00166 - 184 0.13 12.8 10.6 1 3 2.1e-05 0.13 12.8 3.6 28 74 25 73 20 95 0.85 Immunity protein 59 Imm59 PF15597.6 100 pGCA_001717605_00166 - 184 0.13 12.8 10.6 2 3 0.039 2.3e+02 2.3 2.1 10 47 68 108 63 142 0.61 Immunity protein 59 Imm59 PF15597.6 100 pGCA_001717605_00166 - 184 0.13 12.8 10.6 3 3 0.039 2.3e+02 2.3 1.0 39 62 124 149 88 183 0.63 Immunity protein 59 ABC2_membrane_3 PF12698.7 345 pGCA_001717605_00166 - 184 0.29 10.2 0.8 1 1 5.3e-05 0.32 10.1 0.8 47 122 43 118 23 175 0.68 ABC-2 family transporter protein AHH PF14412.6 114 pGCA_001717605_00167 - 258 6.2e-16 58.5 1.7 1 1 6.7e-20 1.2e-15 57.6 1.7 9 111 154 239 149 243 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH DUF4299 PF14132.6 301 pGCA_001717605_00169 - 116 3.2e-08 33.4 0.1 1 1 6.2e-12 3.7e-08 33.2 0.1 189 300 12 110 5 111 0.85 Domain of unknown function (DUF4299) A2M PF00207.22 92 pGCA_001717605_00169 - 116 0.11 12.3 0.0 1 1 2.6e-05 0.16 11.9 0.0 17 56 49 89 36 94 0.81 Alpha-2-macroglobulin family XPG_I PF00867.18 94 pGCA_001717605_00169 - 116 0.13 12.7 0.0 1 1 2.6e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region Phage_GPD PF05954.11 304 pGCA_001717605_00171 - 838 5.5e-18 65.3 0.0 1 1 9.6e-22 8.6e-18 64.6 0.0 21 281 72 360 45 376 0.76 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 pGCA_001717605_00171 - 838 0.11 12.1 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 pGCA_001717605_00171 - 838 0.11 12.1 0.0 2 2 0.00042 3.8 7.2 0.0 19 49 461 491 452 518 0.81 TCL1/MTCP1 family DivIC PF04977.15 80 pGCA_001717605_00173 - 635 0.0014 18.3 0.2 1 5 8e-08 0.0014 18.3 0.2 23 78 35 90 31 92 0.94 Septum formation initiator DivIC PF04977.15 80 pGCA_001717605_00173 - 635 0.0014 18.3 0.2 2 5 0.19 3.3e+03 -2.1 3.7 24 50 259 285 248 295 0.58 Septum formation initiator DivIC PF04977.15 80 pGCA_001717605_00173 - 635 0.0014 18.3 0.2 3 5 0.48 8.6e+03 -3.4 0.3 40 57 376 392 375 393 0.79 Septum formation initiator DivIC PF04977.15 80 pGCA_001717605_00173 - 635 0.0014 18.3 0.2 4 5 0.4 7.1e+03 -3.1 2.3 21 41 439 459 431 484 0.61 Septum formation initiator DivIC PF04977.15 80 pGCA_001717605_00173 - 635 0.0014 18.3 0.2 5 5 0.17 3.1e+03 -2.0 0.1 16 35 614 633 609 635 0.77 Septum formation initiator DZR PF12773.7 49 pGCA_001717605_00174 - 114 0.039 14.0 0.3 1 1 9.1e-06 0.054 13.5 0.3 13 37 5 38 2 43 0.91 Double zinc ribbon DiS_P_DiS PF06750.13 84 pGCA_001717605_00174 - 114 0.04 14.1 0.4 1 1 1.3e-05 0.077 13.1 0.4 29 72 6 49 2 59 0.83 Bacterial Peptidase A24 N-terminal domain zinc_ribbon_4 PF13717.6 36 pGCA_001717605_00174 - 114 0.6 10.1 4.6 1 2 0.054 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_001717605_00174 - 114 0.6 10.1 4.6 2 2 0.00011 0.64 10.0 0.4 3 14 30 41 29 45 0.88 zinc-ribbon domain Rapsyn_N PF10579.9 80 pGCA_001717605_00175 - 358 0.12 12.5 1.2 1 2 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 pGCA_001717605_00175 - 358 0.12 12.5 1.2 2 2 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region SprT-like PF10263.9 113 pGCA_001717605_00177 - 424 0.056 13.3 0.1 1 1 1.5e-05 0.13 12.1 0.1 58 93 316 353 294 360 0.81 SprT-like family Peptidase_M78 PF06114.13 123 pGCA_001717605_00177 - 424 0.077 12.9 0.1 1 1 2e-05 0.18 11.8 0.1 6 63 288 347 285 365 0.76 IrrE N-terminal-like domain Phage_integrase PF00589.22 172 pGCA_001717605_00180 - 312 5.1e-24 85.0 0.5 1 1 2.8e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 pGCA_001717605_00180 - 312 2.3e-05 24.6 3.9 1 3 1.4e-07 0.00043 20.5 1.9 1 79 16 99 16 99 0.88 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pGCA_001717605_00180 - 312 2.3e-05 24.6 3.9 2 3 0.0015 4.4 7.7 0.0 13 35 80 102 76 109 0.89 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pGCA_001717605_00180 - 312 2.3e-05 24.6 3.9 3 3 3.1 9.3e+03 -3.0 0.0 36 54 123 141 114 151 0.54 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 pGCA_001717605_00180 - 312 0.00011 22.4 4.6 1 3 3.8e-08 0.00011 22.4 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pGCA_001717605_00180 - 312 0.00011 22.4 4.6 2 3 0.91 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pGCA_001717605_00180 - 312 0.00011 22.4 4.6 3 3 1.8 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phyto-Amp PF15438.6 195 pGCA_001717605_00180 - 312 0.0094 15.8 0.3 1 1 5.8e-06 0.017 14.9 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma YbjN PF10722.9 127 pGCA_001717605_00180 - 312 0.011 15.8 0.3 1 2 0.00017 0.51 10.4 0.1 38 77 96 135 93 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 pGCA_001717605_00180 - 312 0.011 15.8 0.3 2 2 0.04 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator Phage_int_SAM_3 PF14659.6 58 pGCA_001717605_00180 - 312 0.028 14.7 3.2 1 1 3.6e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain FlaC_arch PF05377.11 55 pGCA_001717605_00181 - 76 0.0083 16.5 2.3 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pGCA_001717605_00181 - 76 0.0083 16.5 2.3 2 2 4.6e-07 0.0083 16.5 2.3 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) WGR PF05406.15 80 pGCA_001717605_00182 - 75 2.4e-07 30.7 0.6 1 1 3.1e-11 2.7e-07 30.5 0.6 3 73 4 74 2 75 0.87 WGR domain Cadherin_pro PF08758.11 90 pGCA_001717605_00182 - 75 0.017 15.3 0.0 1 1 2.3e-06 0.021 15.0 0.0 15 45 26 56 12 62 0.81 Cadherin prodomain like YafQ_toxin PF15738.5 88 pGCA_001717605_00186 - 106 1.6e-26 92.4 3.7 1 1 4.7e-30 2.1e-26 92.0 3.7 1 87 20 106 20 106 0.95 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 pGCA_001717605_00186 - 106 1.9e-06 28.4 0.6 1 1 4.9e-10 2.2e-06 28.2 0.6 6 89 23 105 18 106 0.80 ParE toxin of type II toxin-antitoxin system, parDE Ribosomal_S2 PF00318.20 215 pGCA_001717605_00186 - 106 0.0042 16.3 0.9 1 1 1.2e-06 0.0053 16.0 0.9 98 164 27 94 21 99 0.83 Ribosomal protein S2 ParE-like_toxin PF15781.5 87 pGCA_001717605_00186 - 106 0.017 15.1 1.6 1 1 7.8e-06 0.035 14.1 1.6 5 82 26 105 22 106 0.79 ParE-like toxin of type II bacterial toxin-antitoxin system CCDC-167 PF15188.6 84 pGCA_001717605_00191 - 137 0.002 18.4 0.4 1 1 1.1e-06 0.0033 17.7 0.4 37 79 77 119 21 121 0.77 Coiled-coil domain-containing protein 167 DUF3461 PF11944.8 125 pGCA_001717605_00191 - 137 0.015 15.4 3.5 1 1 1.3e-05 0.04 14.0 3.5 23 124 7 100 2 101 0.83 Protein of unknown function (DUF3461) HSBP1 PF06825.12 51 pGCA_001717605_00191 - 137 0.033 14.0 0.1 1 2 0.027 80 3.2 0.0 28 43 61 76 46 78 0.86 Heat shock factor binding protein 1 HSBP1 PF06825.12 51 pGCA_001717605_00191 - 137 0.033 14.0 0.1 2 2 0.00073 2.2 8.2 0.0 17 42 79 104 77 109 0.83 Heat shock factor binding protein 1 Streptin-Immun PF11083.8 93 pGCA_001717605_00191 - 137 0.052 14.0 0.6 1 2 0.35 1.1e+03 0.2 0.1 63 82 40 59 20 68 0.62 Lantibiotic streptin immunity protein Streptin-Immun PF11083.8 93 pGCA_001717605_00191 - 137 0.052 14.0 0.6 2 2 6.7e-05 0.2 12.1 0.1 42 81 68 107 63 115 0.87 Lantibiotic streptin immunity protein DUF4164 PF13747.6 89 pGCA_001717605_00191 - 137 0.1 12.9 0.4 1 1 0.00011 0.32 11.3 0.2 14 42 77 106 62 109 0.77 Domain of unknown function (DUF4164) Trimer_CC PF08954.11 52 pGCA_001717605_00191 - 137 0.14 11.7 0.1 1 2 0.0033 9.8 5.8 0.0 41 52 79 90 52 90 0.70 Trimerisation motif Trimer_CC PF08954.11 52 pGCA_001717605_00191 - 137 0.14 11.7 0.1 2 2 0.19 5.8e+02 0.2 0.0 41 49 90 98 89 100 0.83 Trimerisation motif Sigma_reg_N PF13800.6 90 pGCA_001717605_00192 - 37 0.13 12.6 0.3 1 1 7.1e-06 0.13 12.6 0.3 15 44 5 34 4 37 0.89 Sigma factor regulator N-terminal DUF5601 PF18151.1 65 pGCA_001717605_00193 - 118 0.038 14.3 0.2 1 1 7e-06 0.063 13.6 0.2 14 55 5 47 1 48 0.88 Domain of unknown function (DUF5601) DUF1640 PF07798.11 175 pGCA_001717605_00193 - 118 0.58 10.2 7.1 1 2 1.4e-05 0.12 12.4 2.4 52 100 26 77 9 86 0.83 Protein of unknown function (DUF1640) DUF1640 PF07798.11 175 pGCA_001717605_00193 - 118 0.58 10.2 7.1 2 2 0.068 6.1e+02 0.3 0.3 148 169 82 103 74 110 0.65 Protein of unknown function (DUF1640) HTH_3 PF01381.22 55 pGCA_001717605_00195 - 44 8.4e-07 29.0 0.0 1 1 1e-09 9.1e-07 28.9 0.0 1 33 9 41 9 44 0.95 Helix-turn-helix HTH_26 PF13443.6 63 pGCA_001717605_00195 - 44 0.00022 21.6 0.0 1 1 2.7e-07 0.00024 21.4 0.0 2 34 9 41 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 pGCA_001717605_00195 - 44 0.0007 19.1 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding HTH_19 PF12844.7 65 pGCA_001717605_00195 - 44 0.0012 18.8 0.0 1 1 1.4e-06 0.0013 18.8 0.0 4 37 9 42 7 44 0.91 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 pGCA_001717605_00195 - 44 0.002 18.0 0.1 1 1 2.6e-06 0.0023 17.7 0.1 1 32 9 41 9 43 0.84 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 pGCA_001717605_00195 - 44 0.002 17.9 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 pGCA_001717605_00195 - 44 0.0035 17.4 0.3 1 1 5.7e-06 0.0052 16.8 0.3 25 46 1 22 1 41 0.89 ENT domain HTH_31 PF13560.6 64 pGCA_001717605_00195 - 44 0.0089 16.4 0.0 1 1 1.2e-05 0.011 16.1 0.0 12 38 15 41 9 43 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 pGCA_001717605_00195 - 44 0.009 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 pGCA_001717605_00195 - 44 0.0098 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 pGCA_001717605_00195 - 44 0.013 14.9 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 pGCA_001717605_00195 - 44 0.019 14.9 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 pGCA_001717605_00195 - 44 0.02 14.7 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain HTH_AsnC-type PF13404.6 42 pGCA_001717605_00195 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain Phage_CI_repr PF07022.13 65 pGCA_001717605_00195 - 44 0.03 14.4 0.0 1 1 3.7e-05 0.033 14.3 0.0 3 33 9 38 7 41 0.84 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4 PF04545.16 50 pGCA_001717605_00195 - 44 0.034 13.7 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 HTH_17 PF12728.7 51 pGCA_001717605_00195 - 44 0.081 13.1 0.1 1 2 0.018 16 5.8 0.0 4 16 9 21 9 26 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 pGCA_001717605_00195 - 44 0.081 13.1 0.1 2 2 0.0085 7.6 6.8 0.0 6 26 22 42 19 44 0.78 Helix-turn-helix domain MerR PF00376.23 38 pGCA_001717605_00195 - 44 0.085 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 pGCA_001717605_00195 - 44 0.085 12.7 0.0 2 2 0.01 9.3 6.1 0.0 4 17 22 35 21 41 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 pGCA_001717605_00195 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 pGCA_001717605_00195 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain MobC PF05713.11 45 pGCA_001717605_00197 - 66 5.6e-09 36.3 0.3 1 1 1.4e-12 8.1e-09 35.8 0.3 1 44 19 63 19 64 0.91 Bacterial mobilisation protein (MobC) Vac_Fusion PF02346.16 56 pGCA_001717605_00197 - 66 0.00052 19.6 0.8 1 2 0.007 42 3.9 0.0 19 39 18 38 4 43 0.81 Chordopoxvirus multifunctional envelope protein A27 Vac_Fusion PF02346.16 56 pGCA_001717605_00197 - 66 0.00052 19.6 0.8 2 2 2.3e-06 0.014 15.0 0.5 28 43 49 64 16 65 0.85 Chordopoxvirus multifunctional envelope protein A27 YvrJ PF12841.7 36 pGCA_001717605_00197 - 66 0.18 11.4 0.9 1 2 0.53 3.2e+03 -2.2 0.0 26 28 22 24 19 37 0.54 YvrJ protein family YvrJ PF12841.7 36 pGCA_001717605_00197 - 66 0.18 11.4 0.9 2 2 5.3e-05 0.32 10.6 0.5 16 31 51 66 50 66 0.93 YvrJ protein family Relaxase PF03432.14 242 pGCA_001717605_00198 - 502 3.2e-15 56.4 0.9 1 2 5.3e-19 3.2e-15 56.4 0.9 52 230 48 233 34 244 0.84 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_001717605_00198 - 502 3.2e-15 56.4 0.9 2 2 3 1.8e+04 -11.7 13.5 225 225 321 321 228 496 0.62 Relaxase/Mobilisation nuclease domain EST1 PF10374.9 136 pGCA_001717605_00198 - 502 1.3 9.7 9.1 1 2 0.00019 1.1 9.8 6.6 11 122 229 345 227 427 0.68 Telomerase activating protein Est1 EST1 PF10374.9 136 pGCA_001717605_00198 - 502 1.3 9.7 9.1 2 2 0.64 3.8e+03 -1.6 0.1 56 68 433 445 384 494 0.52 Telomerase activating protein Est1 KxDL PF10241.9 86 pGCA_001717605_00198 - 502 5.4 7.4 10.9 1 4 1.9 1.1e+04 -3.3 0.0 8 18 170 180 167 188 0.82 Uncharacterized conserved protein KxDL PF10241.9 86 pGCA_001717605_00198 - 502 5.4 7.4 10.9 2 4 0.0016 9.4 6.6 2.0 17 54 254 291 248 318 0.89 Uncharacterized conserved protein KxDL PF10241.9 86 pGCA_001717605_00198 - 502 5.4 7.4 10.9 3 4 0.41 2.5e+03 -1.2 0.1 39 59 419 439 393 444 0.62 Uncharacterized conserved protein KxDL PF10241.9 86 pGCA_001717605_00198 - 502 5.4 7.4 10.9 4 4 0.0086 51 4.2 0.1 32 65 462 499 457 502 0.62 Uncharacterized conserved protein Rep_3 PF01051.21 222 pGCA_001717605_00199 - 358 3.7e-38 131.5 16.1 1 2 6.3e-42 3.7e-38 131.5 16.1 2 222 14 241 13 241 0.89 Initiator Replication protein Rep_3 PF01051.21 222 pGCA_001717605_00199 - 358 3.7e-38 131.5 16.1 2 2 0.23 1.4e+03 -1.1 0.4 51 56 306 314 254 355 0.45 Initiator Replication protein AAA_assoc_C PF09821.9 119 pGCA_001717605_00199 - 358 0.0035 17.9 0.6 1 2 1.5 8.7e+03 -2.8 0.0 18 32 108 122 95 140 0.67 C-terminal AAA-associated domain AAA_assoc_C PF09821.9 119 pGCA_001717605_00199 - 358 0.0035 17.9 0.6 2 2 2.1e-06 0.012 16.1 0.2 48 106 244 301 224 304 0.89 C-terminal AAA-associated domain CopG_antitoxin PF12441.8 79 pGCA_001717605_00199 - 358 0.018 15.5 1.2 1 3 0.0034 20 5.8 0.0 33 58 114 139 105 144 0.87 CopG antitoxin of type II toxin-antitoxin system CopG_antitoxin PF12441.8 79 pGCA_001717605_00199 - 358 0.018 15.5 1.2 2 3 0.001 6.1 7.5 0.4 29 69 144 184 139 192 0.88 CopG antitoxin of type II toxin-antitoxin system CopG_antitoxin PF12441.8 79 pGCA_001717605_00199 - 358 0.018 15.5 1.2 3 3 3 1.8e+04 -3.6 0.0 54 63 324 333 321 339 0.67 CopG antitoxin of type II toxin-antitoxin system Rep_3 PF01051.21 222 pGCA_001717605_00202 - 342 8.7e-42 143.4 10.2 1 1 1.7e-45 1.6e-41 142.6 10.2 2 222 2 244 1 244 0.88 Initiator Replication protein SRPRB PF09439.10 181 pGCA_001717605_00202 - 342 0.036 13.5 0.3 1 1 7.6e-06 0.068 12.6 0.3 124 177 241 294 239 301 0.84 Signal recognition particle receptor beta subunit DUF3791 PF12668.7 60 pGCA_001717605_00203 - 44 0.034 14.2 0.1 1 2 0.089 1.6e+03 -0.8 0.0 26 36 2 12 1 13 0.64 Protein of unknown function (DUF3791) DUF3791 PF12668.7 60 pGCA_001717605_00203 - 44 0.034 14.2 0.1 2 2 3.3e-06 0.06 13.4 0.1 13 41 14 42 6 44 0.88 Protein of unknown function (DUF3791) DASH_Spc34 PF08657.10 255 pGCA_001717605_00204 - 424 0.00061 19.7 13.7 1 3 0.3 5.3e+03 -3.1 0.1 107 135 18 46 8 62 0.56 DASH complex subunit Spc34 DASH_Spc34 PF08657.10 255 pGCA_001717605_00204 - 424 0.00061 19.7 13.7 2 3 3.4e-08 0.00061 19.7 13.7 168 249 189 272 129 278 0.88 DASH complex subunit Spc34 DASH_Spc34 PF08657.10 255 pGCA_001717605_00204 - 424 0.00061 19.7 13.7 3 3 0.2 3.5e+03 -2.5 0.4 189 189 358 358 324 414 0.58 DASH complex subunit Spc34 TrbC PF04956.13 99 pGCA_001865595_00002 - 87 1.4e-15 57.3 6.9 1 1 1.8e-19 1.6e-15 57.1 6.9 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pGCA_001865595_00002 - 87 0.041 13.8 3.5 1 1 5.4e-06 0.049 13.5 3.3 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pGCA_001865595_00004 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pGCA_001865595_00004 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pGCA_001865595_00004 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase Resolvase PF00239.21 146 pGCA_001865595_00005 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pGCA_001865595_00005 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_001865595_00005 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_001865595_00005 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pGCA_001865595_00005 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_001865595_00005 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_001865595_00005 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pGCA_001865595_00005 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_001865595_00005 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_001865595_00005 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat AAA_25 PF13481.6 194 pGCA_001865595_00006 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pGCA_001865595_00006 - 597 0.00073 19.0 0.0 1 2 1.6e-06 0.0042 16.5 0.0 16 117 30 136 23 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_001865595_00006 - 597 0.00073 19.0 0.0 2 2 0.014 37 3.5 0.0 123 183 114 176 98 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_001865595_00006 - 597 0.0032 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_001865595_00006 - 597 0.0032 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pGCA_001865595_00006 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_001865595_00006 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pGCA_001865595_00006 - 597 0.028 13.8 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pGCA_001865595_00006 - 597 0.028 13.8 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pGCA_001865595_00006 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pGCA_001865595_00006 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pGCA_001865595_00006 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain HicB_lk_antitox PF15919.5 123 pGCA_001865595_00007 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 pGCA_001865595_00008 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pGCA_001865595_00008 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 pGCA_001865595_00008 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) UBA_6 PF18039.1 42 pGCA_001865595_00009 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 pGCA_001865595_00009 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pGCA_001865595_00009 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 pGCA_001865595_00009 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region DUF4223 PF13978.6 54 pGCA_001865595_00010 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pGCA_001865595_00010 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pGCA_001865595_00010 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 pGCA_001865595_00011 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pGCA_001865595_00011 - 408 0.074 13.0 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pGCA_001865595_00011 - 408 0.13 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pGCA_001865595_00011 - 408 0.27 11.9 5.3 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_001865595_00011 - 408 0.27 11.9 5.3 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF2400 PF09674.10 227 pGCA_001865595_00012 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pGCA_001865595_00012 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) CdvA PF18822.1 123 pGCA_001865595_00014 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 pGCA_001865595_00014 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 pGCA_001865595_00014 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 pGCA_001865595_00014 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 pGCA_001865595_00014 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 pGCA_001865595_00015 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_001865595_00015 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_001865595_00015 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pGCA_001865595_00015 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pGCA_001865595_00015 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_001865595_00015 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_001865595_00015 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pGCA_001865595_00015 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pGCA_001865595_00015 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pGCA_001865595_00015 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pGCA_001865595_00015 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Relaxase PF03432.14 242 pGCA_001865595_00016 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_001865595_00016 - 462 1.9e-10 40.8 7.0 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_19 PF12844.7 65 pGCA_001865595_00017 - 314 9.3e-06 25.6 0.1 1 2 0.0025 4.5 7.4 0.0 11 31 9 29 1 41 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 pGCA_001865595_00017 - 314 9.3e-06 25.6 0.1 2 2 8.7e-06 0.016 15.3 0.0 28 64 117 152 98 153 0.91 Helix-turn-helix domain HTH_3 PF01381.22 55 pGCA_001865595_00017 - 314 9.6e-06 25.6 0.0 1 2 3.2e-07 0.00057 19.9 0.0 2 29 3 30 2 30 0.89 Helix-turn-helix HTH_3 PF01381.22 55 pGCA_001865595_00017 - 314 9.6e-06 25.6 0.0 2 2 0.051 91 3.2 0.0 26 55 118 147 110 147 0.89 Helix-turn-helix Phage_CI_repr PF07022.13 65 pGCA_001865595_00017 - 314 0.00071 19.6 0.0 1 2 2.5e-05 0.045 13.8 0.0 5 49 4 47 1 53 0.78 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 pGCA_001865595_00017 - 314 0.00071 19.6 0.0 2 2 0.051 91 3.3 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 pGCA_001865595_00017 - 314 0.0073 15.8 0.0 1 2 5.5e-05 0.099 12.2 0.0 17 34 10 27 10 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pGCA_001865595_00017 - 314 0.0073 15.8 0.0 2 2 0.21 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 pGCA_001865595_00017 - 314 0.0089 16.1 0.0 1 2 1.7e-05 0.03 14.5 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain HTH_28 PF13518.6 52 pGCA_001865595_00017 - 314 0.0089 16.1 0.0 2 2 3.4 6.2e+03 -2.6 0.0 6 21 44 59 42 67 0.63 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 pGCA_001865595_00017 - 314 0.011 15.6 0.2 1 2 1.6e-05 0.028 14.3 0.0 2 36 3 37 2 49 0.79 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 pGCA_001865595_00017 - 314 0.011 15.6 0.2 2 2 3.5 6.2e+03 -2.8 0.1 38 47 290 299 289 300 0.85 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 pGCA_001865595_00017 - 314 0.017 14.9 0.0 1 2 2.7e-05 0.049 13.4 0.0 16 37 7 30 1 36 0.87 Homeodomain-like domain HTH_23 PF13384.6 50 pGCA_001865595_00017 - 314 0.017 14.9 0.0 2 2 2.6 4.7e+03 -2.4 0.0 35 49 54 67 53 67 0.81 Homeodomain-like domain Sigma70_r4_2 PF08281.12 54 pGCA_001865595_00017 - 314 0.026 14.2 0.0 1 1 3.1e-05 0.055 13.1 0.0 25 46 9 30 6 30 0.93 Sigma-70, region 4 HTH_31 PF13560.6 64 pGCA_001865595_00017 - 314 0.065 13.6 0.0 1 1 6.8e-05 0.12 12.7 0.0 13 33 9 29 3 38 0.89 Helix-turn-helix domain CENP-B_N PF04218.13 53 pGCA_001865595_00017 - 314 0.073 12.7 0.0 1 2 0.00019 0.35 10.5 0.0 22 44 10 32 8 35 0.92 CENP-B N-terminal DNA-binding domain CENP-B_N PF04218.13 53 pGCA_001865595_00017 - 314 0.073 12.7 0.0 2 2 2 3.6e+03 -2.3 0.0 32 41 293 302 290 303 0.82 CENP-B N-terminal DNA-binding domain NYN PF01936.18 147 pGCA_001865595_00018 - 226 1.1e-09 38.9 1.0 1 1 2.6e-13 4.7e-09 36.9 1.0 49 120 123 195 4 216 0.83 NYN domain SNF2_N PF00176.23 350 pGCA_001865595_00019 - 1932 1.7e-16 59.9 1.1 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_001865595_00019 - 1932 1.7e-16 59.9 1.1 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_001865595_00019 - 1932 1.7e-16 59.9 1.1 3 3 1.2 4.4e+03 -3.9 0.0 173 197 1880 1905 1861 1922 0.71 SNF2 family N-terminal domain ResIII PF04851.15 171 pGCA_001865595_00019 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_001865595_00019 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_001865595_00019 - 1932 4.9e-08 33.2 8.3 3 3 0.41 1.5e+03 -0.9 5.7 35 121 1800 1904 1747 1931 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pGCA_001865595_00019 - 1932 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pGCA_001865595_00019 - 1932 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pGCA_001865595_00019 - 1932 6.2e-06 26.1 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pGCA_001865595_00019 - 1932 6.2e-06 26.1 1.6 2 2 0.086 3.1e+02 1.0 0.0 119 155 1883 1924 1827 1930 0.76 DEAD/DEAH box helicase Eco57I PF07669.11 106 pGCA_001865595_00019 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pGCA_001865595_00019 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 pGCA_001865595_00020 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 pGCA_001865595_00021 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pGCA_001865595_00021 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pGCA_001865595_00021 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_001865595_00021 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pGCA_001865595_00021 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pGCA_001865595_00021 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pGCA_001865595_00022 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pGCA_001865595_00022 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 pGCA_001865595_00023 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pGCA_001865595_00023 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pGCA_001865595_00023 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pGCA_001865595_00023 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pGCA_001865595_00023 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pGCA_001865595_00023 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 pGCA_001865595_00024 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pGCA_001865595_00024 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pGCA_001865595_00024 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pGCA_001865595_00024 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pGCA_001865595_00024 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pGCA_001865595_00024 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pGCA_001865595_00024 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pGCA_001865595_00024 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pGCA_001865595_00024 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 pGCA_001865595_00025 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pGCA_001865595_00025 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain Lip_prot_lig_C PF10437.9 85 pGCA_001865595_00026 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pGCA_001865595_00026 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pGCA_001865595_00026 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pGCA_001865595_00026 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain W2 PF02020.18 79 pGCA_001865595_00027 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pGCA_001865595_00027 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pGCA_001865595_00027 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain DUF5442 PF17514.2 107 pGCA_001865595_00029 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pGCA_001865595_00029 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) GTP_EFTU PF00009.27 194 pGCA_001865595_00030 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pGCA_001865595_00030 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pGCA_001865595_00030 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pGCA_001865595_00030 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pGCA_001865595_00030 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pGCA_001865595_00030 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pGCA_001865595_00030 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pGCA_001865595_00030 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pGCA_001865595_00030 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pGCA_001865595_00030 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 pGCA_001865595_00032 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pGCA_001865595_00032 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain Topoisom_bac PF01131.20 413 pGCA_001865595_00033 - 730 1.2e-96 324.2 8.2 1 1 1.6e-99 1.7e-96 323.8 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pGCA_001865595_00033 - 730 1.8e-12 47.4 0.4 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pGCA_001865595_00033 - 730 1.8e-12 47.4 0.4 2 2 4.1 4.3e+03 -2.0 0.1 38 56 537 556 489 568 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 pGCA_001865595_00033 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pGCA_001865595_00033 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pGCA_001865595_00033 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_001865595_00033 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_001865595_00033 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pGCA_001865595_00033 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pGCA_001865595_00033 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pGCA_001865595_00033 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pGCA_001865595_00033 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pGCA_001865595_00033 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pGCA_001865595_00033 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pGCA_001865595_00033 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pGCA_001865595_00033 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pGCA_001865595_00033 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pGCA_001865595_00033 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pGCA_001865595_00033 - 730 0.088 12.7 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pGCA_001865595_00033 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pGCA_001865595_00033 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pGCA_001865595_00033 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_001865595_00033 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_001865595_00033 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pGCA_001865595_00033 - 730 0.55 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pGCA_001865595_00033 - 730 0.55 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pGCA_001865595_00033 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_001865595_00033 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pGCA_001865595_00033 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pGCA_001865595_00033 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pGCA_001865595_00033 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pGCA_001865595_00033 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pGCA_001865595_00033 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pGCA_001865595_00033 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 pGCA_001865595_00034 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pGCA_001865595_00034 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 pGCA_001865595_00036 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pGCA_001865595_00036 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pGCA_001865595_00036 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pGCA_001865595_00036 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_001865595_00036 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_001865595_00036 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 pGCA_001865595_00037 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 pGCA_001865595_00038 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pGCA_001865595_00038 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pGCA_001865595_00038 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pGCA_001865595_00038 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pGCA_001865595_00038 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 pGCA_001865595_00039 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_001865595_00039 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pGCA_001865595_00039 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_001865595_00039 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pGCA_001865595_00039 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 pGCA_001865595_00040 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pGCA_001865595_00040 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_001865595_00040 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pGCA_001865595_00040 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pGCA_001865595_00040 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pGCA_001865595_00040 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pGCA_001865595_00040 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pGCA_001865595_00040 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pGCA_001865595_00040 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pGCA_001865595_00040 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pGCA_001865595_00040 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pGCA_001865595_00040 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pGCA_001865595_00040 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pGCA_001865595_00040 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pGCA_001865595_00040 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pGCA_001865595_00040 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pGCA_001865595_00040 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pGCA_001865595_00040 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pGCA_001865595_00040 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pGCA_001865595_00040 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pGCA_001865595_00040 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pGCA_001865595_00040 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pGCA_001865595_00040 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pGCA_001865595_00040 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pGCA_001865595_00040 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pGCA_001865595_00040 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pGCA_001865595_00040 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pGCA_001865595_00040 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pGCA_001865595_00040 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pGCA_001865595_00040 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pGCA_001865595_00040 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pGCA_001865595_00040 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 pGCA_001865595_00041 - 390 3.1e-48 164.1 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 193 374 193 374 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pGCA_001865595_00041 - 390 0.028 13.5 0.1 1 1 4.8e-06 0.043 12.9 0.1 31 81 321 371 304 376 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 pGCA_001865595_00042 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pGCA_001865595_00042 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pGCA_001865595_00042 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 pGCA_001865595_00043 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pGCA_001865595_00043 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 pGCA_001865595_00044 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pGCA_001865595_00044 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 pGCA_001865595_00045 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pGCA_001865595_00045 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pGCA_001865595_00045 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pGCA_001865595_00045 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pGCA_001865595_00045 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 pGCA_001865595_00046 - 323 1.6e-28 100.5 13.6 1 1 6.7e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pGCA_001865595_00046 - 323 0.0055 16.8 0.6 1 2 0.85 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pGCA_001865595_00046 - 323 0.0055 16.8 0.6 2 2 6.9e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pGCA_001865595_00046 - 323 0.015 16.0 5.3 1 2 0.04 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pGCA_001865595_00046 - 323 0.015 16.0 5.3 2 2 5e-06 0.015 16.0 5.3 49 128 225 318 205 322 0.76 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 pGCA_001865595_00046 - 323 0.018 15.7 1.0 1 2 1.9 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pGCA_001865595_00046 - 323 0.018 15.7 1.0 2 2 1.2e-05 0.036 14.7 0.2 31 84 208 270 197 310 0.85 von Willebrand factor type A domain THOC7 PF05615.13 132 pGCA_001865595_00046 - 323 2.9 8.2 11.5 1 2 0.00053 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pGCA_001865595_00046 - 323 2.9 8.2 11.5 2 2 0.16 4.9e+02 1.0 6.0 15 71 230 294 215 315 0.58 Tho complex subunit 7 DHR10 PF18595.1 117 pGCA_001865595_00046 - 323 5.1 7.2 14.8 1 2 0.087 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pGCA_001865595_00046 - 323 5.1 7.2 14.8 2 2 0.00018 0.55 10.3 6.5 37 105 233 300 223 313 0.82 Designed helical repeat protein 10 domain IF2_N PF04760.15 54 pGCA_001865595_00047 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pGCA_001865595_00047 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pGCA_001865595_00047 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pGCA_001865595_00047 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pGCA_001865595_00047 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pGCA_001865595_00047 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pGCA_001865595_00047 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 pGCA_001865595_00048 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3251 PF11622.8 165 pGCA_001865595_00049 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pGCA_001865595_00049 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pGCA_001865595_00049 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pGCA_001865595_00049 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_001865595_00049 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_001865595_00049 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pGCA_001865595_00049 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pGCA_001865595_00049 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pGCA_001865595_00049 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pGCA_001865595_00049 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pGCA_001865595_00049 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pGCA_001865595_00049 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pGCA_001865595_00049 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pGCA_001865595_00049 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) Phage_pRha PF09669.10 88 pGCA_001865595_00050 - 185 6.3e-29 100.4 0.0 1 1 2.7e-32 9.7e-29 99.8 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pGCA_001865595_00050 - 185 0.0015 18.6 0.0 1 1 9.1e-07 0.0033 17.5 0.0 23 90 27 94 23 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pGCA_001865595_00050 - 185 0.045 13.3 0.1 1 2 0.066 2.4e+02 1.3 0.0 80 118 33 71 5 80 0.79 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pGCA_001865595_00050 - 185 0.045 13.3 0.1 2 2 0.00012 0.42 10.2 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pGCA_001865595_00050 - 185 0.086 12.9 0.0 1 1 5.8e-05 0.21 11.6 0.0 77 131 80 130 63 134 0.84 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pGCA_001865595_00050 - 185 0.73 9.9 5.7 1 3 0.054 1.9e+02 2.1 0.0 43 53 15 25 4 29 0.81 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pGCA_001865595_00050 - 185 0.73 9.9 5.7 2 3 0.0022 7.9 6.6 0.8 5 26 30 50 26 61 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pGCA_001865595_00050 - 185 0.73 9.9 5.7 3 3 0.064 2.3e+02 1.9 0.0 10 42 116 154 108 160 0.67 Sporulation protein Cse60 CagE_TrbE_VirB PF03135.14 206 pGCA_001865595_00051 - 559 1.6e-28 100.2 0.0 1 1 7.6e-32 4.5e-28 98.8 0.0 88 206 1 119 1 119 0.99 CagE, TrbE, VirB family, component of type IV transporter system HNOBA PF07701.14 221 pGCA_001865595_00051 - 559 0.022 14.2 0.1 1 1 6.2e-06 0.037 13.5 0.1 53 153 261 481 259 489 0.85 Heme NO binding associated cEGF PF12662.7 24 pGCA_001865595_00051 - 559 0.2 11.6 0.0 1 1 9.1e-05 0.54 10.2 0.0 14 24 396 407 392 407 0.82 Complement Clr-like EGF-like TrbC PF04956.13 99 pGCA_001865615_00003 - 87 1.4e-15 57.3 6.9 1 1 1.8e-19 1.6e-15 57.1 6.9 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pGCA_001865615_00003 - 87 0.041 13.8 3.5 1 1 5.4e-06 0.049 13.5 3.3 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pGCA_001865615_00005 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pGCA_001865615_00005 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pGCA_001865615_00005 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase Resolvase PF00239.21 146 pGCA_001865615_00006 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pGCA_001865615_00006 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_001865615_00006 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_001865615_00006 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pGCA_001865615_00006 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_001865615_00006 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_001865615_00006 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pGCA_001865615_00006 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_001865615_00006 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_001865615_00006 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat AAA_25 PF13481.6 194 pGCA_001865615_00007 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pGCA_001865615_00007 - 597 0.00073 19.0 0.0 1 2 1.6e-06 0.0042 16.5 0.0 16 117 30 136 23 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_001865615_00007 - 597 0.00073 19.0 0.0 2 2 0.014 37 3.5 0.0 123 183 114 176 98 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_001865615_00007 - 597 0.0032 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_001865615_00007 - 597 0.0032 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pGCA_001865615_00007 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_001865615_00007 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pGCA_001865615_00007 - 597 0.028 13.8 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pGCA_001865615_00007 - 597 0.028 13.8 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pGCA_001865615_00007 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pGCA_001865615_00007 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pGCA_001865615_00007 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain HicB_lk_antitox PF15919.5 123 pGCA_001865615_00008 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system UBA_6 PF18039.1 42 pGCA_001865615_00011 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 pGCA_001865615_00011 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pGCA_001865615_00011 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 pGCA_001865615_00011 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region DUF4223 PF13978.6 54 pGCA_001865615_00012 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pGCA_001865615_00012 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pGCA_001865615_00012 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 pGCA_001865615_00013 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pGCA_001865615_00013 - 408 0.074 13.0 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pGCA_001865615_00013 - 408 0.13 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pGCA_001865615_00013 - 408 0.27 11.9 5.3 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_001865615_00013 - 408 0.27 11.9 5.3 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF2400 PF09674.10 227 pGCA_001865615_00014 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pGCA_001865615_00014 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) CdvA PF18822.1 123 pGCA_001865615_00016 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 pGCA_001865615_00016 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 pGCA_001865615_00016 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 pGCA_001865615_00016 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 pGCA_001865615_00016 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 pGCA_001865615_00017 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_001865615_00017 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_001865615_00017 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pGCA_001865615_00017 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pGCA_001865615_00017 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_001865615_00017 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_001865615_00017 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pGCA_001865615_00017 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pGCA_001865615_00017 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pGCA_001865615_00017 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pGCA_001865615_00017 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Relaxase PF03432.14 242 pGCA_001865615_00018 - 462 2.1e-10 40.6 7.3 1 2 1.2e-14 2.1e-10 40.6 7.3 41 229 102 297 70 316 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_001865615_00018 - 462 2.1e-10 40.6 7.3 2 2 0.042 7.6e+02 -0.5 6.9 137 183 348 394 314 427 0.71 Relaxase/Mobilisation nuclease domain Acetyltransf_7 PF13508.7 76 pGCA_001865615_00019 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pGCA_001865615_00019 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family SNF2_N PF00176.23 350 pGCA_001865615_00020 - 1212 2.3e-16 59.4 3.3 1 3 7.4e-20 2.7e-16 59.3 0.4 56 245 297 553 215 568 0.73 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_001865615_00020 - 1212 2.3e-16 59.4 3.3 2 3 0.4 1.4e+03 -2.3 0.0 245 283 749 792 742 811 0.70 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_001865615_00020 - 1212 2.3e-16 59.4 3.3 3 3 0.4 1.4e+03 -2.4 0.0 170 200 1157 1188 1127 1202 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pGCA_001865615_00020 - 1212 3.3e-08 33.7 8.7 1 2 9.3e-12 3.3e-08 33.7 8.7 2 148 280 492 279 523 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_001865615_00020 - 1212 3.3e-08 33.7 8.7 2 2 1.4 5.1e+03 -2.7 8.5 35 121 1080 1184 956 1209 0.71 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pGCA_001865615_00020 - 1212 9.9e-07 29.1 1.8 1 3 0.1 3.7e+02 1.5 0.0 45 73 357 385 307 389 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pGCA_001865615_00020 - 1212 9.9e-07 29.1 1.8 2 3 7.4e-09 2.7e-05 24.5 0.0 40 111 791 864 745 864 0.79 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pGCA_001865615_00020 - 1212 9.9e-07 29.1 1.8 3 3 3.8 1.4e+04 -3.5 0.1 33 66 1134 1167 1116 1171 0.56 Helicase conserved C-terminal domain DEAD PF00270.29 176 pGCA_001865615_00020 - 1212 1.4e-06 28.2 1.4 1 2 1.7e-07 0.00061 19.6 0.3 2 108 284 389 283 488 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pGCA_001865615_00020 - 1212 1.4e-06 28.2 1.4 2 2 0.065 2.3e+02 1.4 0.0 119 150 1163 1196 1103 1208 0.70 DEAD/DEAH box helicase BST2 PF16716.5 91 pGCA_001865615_00020 - 1212 2.6 8.7 5.8 1 2 0.003 11 6.7 2.0 48 87 408 447 397 451 0.89 Bone marrow stromal antigen 2 BST2 PF16716.5 91 pGCA_001865615_00020 - 1212 2.6 8.7 5.8 2 2 0.24 8.6e+02 0.6 0.1 59 80 1124 1145 1111 1155 0.75 Bone marrow stromal antigen 2 Eco57I PF07669.11 106 pGCA_001865615_00021 - 677 5.7e-06 26.8 0.9 1 2 8.9e-09 8e-05 23.1 0.2 3 103 310 410 308 413 0.78 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pGCA_001865615_00021 - 677 5.7e-06 26.8 0.9 2 2 0.07 6.3e+02 0.9 0.0 40 81 598 639 560 657 0.75 Eco57I restriction-modification methylase MTS PF05175.14 169 pGCA_001865615_00021 - 677 0.0039 16.8 0.0 1 1 1.1e-06 0.0095 15.5 0.0 31 144 247 365 237 380 0.72 Methyltransferase small domain RHH_7 PF16777.5 74 pGCA_001865615_00022 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 pGCA_001865615_00023 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pGCA_001865615_00023 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pGCA_001865615_00023 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_001865615_00023 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pGCA_001865615_00023 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pGCA_001865615_00023 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pGCA_001865615_00024 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pGCA_001865615_00024 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) NPA PF16469.5 123 pGCA_001865615_00025 - 113 0.02 15.5 5.1 1 1 1.4e-06 0.025 15.1 5.1 12 103 20 111 10 113 0.86 Nematode polyprotein allergen ABA-1 DUF4044 PF13253.6 33 pGCA_001865615_00026 - 83 0.012 15.1 1.1 1 1 4.1e-06 0.019 14.5 1.1 9 32 17 40 15 41 0.88 Protein of unknown function (DUF4044) DUF443 PF04276.12 203 pGCA_001865615_00026 - 83 0.013 15.3 6.9 1 1 3.1e-06 0.014 15.2 6.9 126 198 5 77 1 80 0.78 Protein of unknown function (DUF443) Claudin_2 PF13903.6 193 pGCA_001865615_00026 - 83 0.03 14.1 1.0 1 1 7.5e-06 0.034 13.9 1.0 80 147 11 78 6 82 0.87 PMP-22/EMP/MP20/Claudin tight junction Popeye PF04831.13 140 pGCA_001865615_00026 - 83 0.16 12.1 2.0 1 1 3.7e-05 0.16 12.1 1.2 8 49 36 78 28 81 0.72 Popeye protein conserved region LysE PF01810.18 193 pGCA_001865615_00027 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pGCA_001865615_00027 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pGCA_001865615_00027 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pGCA_001865615_00027 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pGCA_001865615_00027 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pGCA_001865615_00027 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pGCA_001865615_00027 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pGCA_001865615_00027 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pGCA_001865615_00027 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 pGCA_001865615_00028 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pGCA_001865615_00028 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain CtsR_C PF17727.1 72 pGCA_001865615_00029 - 107 0.036 14.2 0.3 1 2 0.00019 3.4 7.9 0.0 3 38 31 66 27 73 0.86 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pGCA_001865615_00029 - 107 0.036 14.2 0.3 2 2 0.0023 41 4.4 0.0 28 48 74 94 71 99 0.84 CtsR C-terminal dimerization domain W2 PF02020.18 79 pGCA_001865615_00030 - 266 0.02 15.0 0.1 1 2 0.23 4.1e+03 -2.0 0.0 43 65 155 177 150 179 0.61 eIF4-gamma/eIF5/eIF2-epsilon W2 PF02020.18 79 pGCA_001865615_00030 - 266 0.02 15.0 0.1 2 2 3.4e-06 0.061 13.5 0.0 38 77 180 240 176 242 0.86 eIF4-gamma/eIF5/eIF2-epsilon APH PF01636.23 240 pGCA_001865615_00031 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pGCA_001865615_00031 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pGCA_001865615_00031 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pGCA_001865615_00031 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family Peptidase_C15 PF01470.17 202 pGCA_001865615_00032 - 139 2.2e-51 174.9 0.1 1 1 1.4e-55 2.4e-51 174.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase APH PF01636.23 240 pGCA_001865615_00033 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pGCA_001865615_00033 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pGCA_001865615_00033 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pGCA_001865615_00033 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pGCA_001865615_00033 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pGCA_001865615_00033 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase AAA_18 PF13238.6 130 pGCA_001865615_00034 - 152 1.5e-06 28.8 0.0 1 1 4.5e-10 2e-06 28.4 0.0 44 122 15 104 2 112 0.79 AAA domain CPT PF07931.12 174 pGCA_001865615_00034 - 152 3.5e-06 27.0 0.0 1 1 9.4e-10 4.2e-06 26.7 0.0 59 172 26 143 5 145 0.80 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 pGCA_001865615_00034 - 152 0.0018 18.5 0.0 1 1 5.7e-07 0.0026 17.9 0.0 55 135 35 114 4 117 0.78 AAA domain MKT1_N PF12247.8 90 pGCA_001865615_00034 - 152 0.088 13.2 0.0 1 1 3.7e-05 0.17 12.3 0.0 14 51 10 45 7 135 0.89 Temperature dependent protein affecting M2 dsRNA replication GTP_EFTU PF00009.27 194 pGCA_001865615_00035 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pGCA_001865615_00035 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pGCA_001865615_00035 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pGCA_001865615_00035 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pGCA_001865615_00035 - 639 2.2e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pGCA_001865615_00035 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pGCA_001865615_00035 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pGCA_001865615_00035 - 639 0.0095 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pGCA_001865615_00035 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pGCA_001865615_00035 - 639 0.049 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family PcfJ PF14284.6 144 pGCA_001865615_00037 - 340 0.00071 19.5 1.8 1 1 2.3e-07 0.0021 18.0 1.8 4 125 209 324 206 339 0.65 PcfJ-like protein Intein_splicing PF14890.6 134 pGCA_001865615_00037 - 340 0.033 14.1 2.9 1 1 2.8e-05 0.25 11.3 2.9 37 119 189 316 88 322 0.75 Intein splicing domain Topoisom_bac PF01131.20 413 pGCA_001865615_00039 - 731 1.2e-96 324.2 8.2 1 1 1.5e-99 1.7e-96 323.8 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pGCA_001865615_00039 - 731 1.8e-12 47.4 0.4 1 2 9.2e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pGCA_001865615_00039 - 731 1.8e-12 47.4 0.4 2 2 3.9 4.4e+03 -2.0 0.0 38 56 537 556 489 567 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 pGCA_001865615_00039 - 731 1.4e-08 34.4 15.0 1 2 3.7e-09 4.1e-06 26.5 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pGCA_001865615_00039 - 731 1.4e-08 34.4 15.0 2 2 6.8e-05 0.076 12.8 2.3 3 27 683 710 681 723 0.86 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pGCA_001865615_00039 - 731 1e-05 25.7 2.3 1 3 8.3 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_001865615_00039 - 731 1e-05 25.7 2.3 2 3 0.00037 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_001865615_00039 - 731 1e-05 25.7 2.3 3 3 3.8e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pGCA_001865615_00039 - 731 0.012 15.7 1.3 1 2 0.0077 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pGCA_001865615_00039 - 731 0.012 15.7 1.3 2 2 0.0045 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pGCA_001865615_00039 - 731 0.028 14.8 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pGCA_001865615_00039 - 731 0.028 14.8 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 pGCA_001865615_00039 - 731 0.056 14.3 2.8 1 2 0.0071 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pGCA_001865615_00039 - 731 0.056 14.3 2.8 2 2 0.021 23 6.1 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pGCA_001865615_00039 - 731 0.087 12.3 2.7 1 2 0.003 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pGCA_001865615_00039 - 731 0.087 12.3 2.7 2 2 0.02 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pGCA_001865615_00039 - 731 0.088 12.7 0.0 1 1 0.00027 0.3 10.9 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pGCA_001865615_00039 - 731 0.089 13.1 4.5 1 2 0.00079 0.89 9.9 3.7 5 64 627 689 623 696 0.71 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pGCA_001865615_00039 - 731 0.089 13.1 4.5 2 2 0.0023 2.6 8.4 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pGCA_001865615_00039 - 731 0.46 10.7 3.3 1 3 1.7 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_001865615_00039 - 731 0.46 10.7 3.3 2 3 5 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_001865615_00039 - 731 0.46 10.7 3.3 3 3 0.00076 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pGCA_001865615_00039 - 731 0.55 9.9 3.0 1 2 0.03 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pGCA_001865615_00039 - 731 0.55 9.9 3.0 2 2 0.011 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pGCA_001865615_00039 - 731 0.64 10.0 3.8 1 2 0.0041 4.6 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_001865615_00039 - 731 0.64 10.0 3.8 2 2 0.13 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pGCA_001865615_00039 - 731 0.76 9.9 3.8 1 2 0.1 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pGCA_001865615_00039 - 731 0.76 9.9 3.8 2 2 0.0039 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pGCA_001865615_00039 - 731 7 6.5 8.0 1 2 0.046 52 3.7 2.5 15 31 629 645 627 660 0.79 PADR1 (NUC008) domain PADR1 PF08063.12 53 pGCA_001865615_00039 - 731 7 6.5 8.0 2 2 0.016 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pGCA_001865615_00039 - 731 8.4 6.4 6.5 1 2 0.01 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pGCA_001865615_00039 - 731 8.4 6.4 6.5 2 2 0.088 99 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 pGCA_001865615_00040 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pGCA_001865615_00040 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 pGCA_001865615_00042 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pGCA_001865615_00042 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pGCA_001865615_00042 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pGCA_001865615_00042 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_001865615_00042 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_001865615_00042 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 pGCA_001865615_00043 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 pGCA_001865615_00044 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pGCA_001865615_00044 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pGCA_001865615_00044 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pGCA_001865615_00044 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pGCA_001865615_00044 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 pGCA_001865615_00045 - 502 6.6e-104 348.3 0.0 1 1 2.3e-107 1e-103 347.7 0.0 32 461 13 464 4 470 0.86 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_001865615_00045 - 502 6.6e-25 87.5 0.0 1 1 3.4e-28 1.5e-24 86.4 0.0 2 125 305 427 304 428 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pGCA_001865615_00045 - 502 9.9e-15 54.3 0.0 1 2 3.1e-05 0.14 11.0 0.0 45 146 52 165 24 194 0.73 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_001865615_00045 - 502 9.9e-15 54.3 0.0 2 2 1.9e-14 8.6e-11 41.4 0.0 187 370 246 431 206 442 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pGCA_001865615_00045 - 502 0.037 14.2 0.1 1 1 1.9e-05 0.084 13.0 0.1 2 60 64 125 63 134 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 pGCA_001865615_00047 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pGCA_001865615_00047 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_001865615_00047 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pGCA_001865615_00047 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pGCA_001865615_00047 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pGCA_001865615_00047 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pGCA_001865615_00047 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pGCA_001865615_00047 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pGCA_001865615_00047 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pGCA_001865615_00047 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pGCA_001865615_00047 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pGCA_001865615_00047 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pGCA_001865615_00047 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pGCA_001865615_00047 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pGCA_001865615_00047 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pGCA_001865615_00047 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pGCA_001865615_00047 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pGCA_001865615_00047 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pGCA_001865615_00047 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pGCA_001865615_00047 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pGCA_001865615_00047 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pGCA_001865615_00047 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pGCA_001865615_00047 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pGCA_001865615_00047 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pGCA_001865615_00047 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pGCA_001865615_00047 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pGCA_001865615_00047 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pGCA_001865615_00047 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pGCA_001865615_00047 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pGCA_001865615_00047 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pGCA_001865615_00047 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pGCA_001865615_00047 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 pGCA_001865615_00048 - 390 3.1e-48 164.1 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 193 374 193 374 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pGCA_001865615_00048 - 390 0.028 13.5 0.1 1 1 4.8e-06 0.043 12.9 0.1 31 81 321 371 304 376 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 pGCA_001865615_00049 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pGCA_001865615_00049 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pGCA_001865615_00049 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 pGCA_001865615_00050 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pGCA_001865615_00050 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 pGCA_001865615_00051 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pGCA_001865615_00051 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 pGCA_001865615_00052 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pGCA_001865615_00052 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pGCA_001865615_00052 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pGCA_001865615_00052 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pGCA_001865615_00052 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 pGCA_001865615_00053 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pGCA_001865615_00053 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pGCA_001865615_00053 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pGCA_001865615_00053 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pGCA_001865615_00053 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pGCA_001865615_00053 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pGCA_001865615_00053 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pGCA_001865615_00053 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pGCA_001865615_00053 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 pGCA_001865615_00053 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pGCA_001865615_00053 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pGCA_001865615_00053 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pGCA_001865615_00053 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 pGCA_001865615_00053 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pGCA_001865615_00053 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain IF2_N PF04760.15 54 pGCA_001865615_00054 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pGCA_001865615_00054 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pGCA_001865615_00054 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pGCA_001865615_00054 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pGCA_001865615_00054 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pGCA_001865615_00054 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pGCA_001865615_00054 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 pGCA_001865615_00055 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3251 PF11622.8 165 pGCA_001865615_00056 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pGCA_001865615_00056 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pGCA_001865615_00056 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pGCA_001865615_00056 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_001865615_00056 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_001865615_00056 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pGCA_001865615_00056 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pGCA_001865615_00056 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pGCA_001865615_00056 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pGCA_001865615_00056 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pGCA_001865615_00056 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pGCA_001865615_00056 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pGCA_001865615_00056 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pGCA_001865615_00056 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) Phage_pRha PF09669.10 88 pGCA_001865615_00057 - 185 6.3e-29 100.4 0.0 1 1 2.7e-32 9.7e-29 99.8 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pGCA_001865615_00057 - 185 0.0015 18.6 0.0 1 1 9.1e-07 0.0033 17.5 0.0 23 90 27 94 23 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pGCA_001865615_00057 - 185 0.045 13.3 0.1 1 2 0.066 2.4e+02 1.3 0.0 80 118 33 71 5 80 0.79 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pGCA_001865615_00057 - 185 0.045 13.3 0.1 2 2 0.00012 0.42 10.2 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pGCA_001865615_00057 - 185 0.086 12.9 0.0 1 1 5.8e-05 0.21 11.6 0.0 77 131 80 130 63 134 0.84 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pGCA_001865615_00057 - 185 0.73 9.9 5.7 1 3 0.054 1.9e+02 2.1 0.0 43 53 15 25 4 29 0.81 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pGCA_001865615_00057 - 185 0.73 9.9 5.7 2 3 0.0022 7.9 6.6 0.8 5 26 30 50 26 61 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pGCA_001865615_00057 - 185 0.73 9.9 5.7 3 3 0.064 2.3e+02 1.9 0.0 10 42 116 154 108 160 0.67 Sporulation protein Cse60 bZIP_1 PF00170.21 64 pGCA_001865615_00058 - 143 0.68 10.1 5.2 1 2 0.0016 29 4.9 0.4 28 57 2 31 1 37 0.84 bZIP transcription factor bZIP_1 PF00170.21 64 pGCA_001865615_00058 - 143 0.68 10.1 5.2 2 2 0.00028 5 7.3 0.5 36 57 120 141 117 143 0.90 bZIP transcription factor IMS PF00817.20 150 pGCA_001936355_00001 - 126 1.1e-06 28.7 0.1 1 1 1.7e-10 3e-06 27.3 0.1 1 80 10 122 10 126 0.71 impB/mucB/samB family DUF4368 PF14287.6 67 pGCA_001936355_00002 - 628 3.6e-23 81.6 2.1 1 1 3.2e-26 1.2e-22 80.0 2.1 2 66 472 537 471 538 0.92 Domain of unknown function (DUF4368) Recombinase PF07508.13 104 pGCA_001936355_00002 - 628 3.6e-22 78.7 0.7 1 2 2.2 7.8e+03 -2.7 0.0 8 32 133 157 132 173 0.80 Recombinase Recombinase PF07508.13 104 pGCA_001936355_00002 - 628 3.6e-22 78.7 0.7 2 2 3.8e-25 1.4e-21 76.9 0.2 1 101 183 303 183 305 0.96 Recombinase Resolvase PF00239.21 146 pGCA_001936355_00002 - 628 5.2e-21 75.3 0.1 1 3 1.5e-24 5.2e-21 75.3 0.1 2 146 9 161 8 161 0.90 Resolvase, N terminal domain Resolvase PF00239.21 146 pGCA_001936355_00002 - 628 5.2e-21 75.3 0.1 2 3 0.11 4e+02 1.1 2.0 21 62 380 422 373 520 0.78 Resolvase, N terminal domain Resolvase PF00239.21 146 pGCA_001936355_00002 - 628 5.2e-21 75.3 0.1 3 3 1 3.6e+03 -2.1 1.6 123 142 579 598 549 602 0.65 Resolvase, N terminal domain Zn_ribbon_recom PF13408.6 58 pGCA_001936355_00002 - 628 1.4e-12 47.9 2.6 1 1 1.2e-15 4.3e-12 46.3 2.6 1 58 318 380 318 380 0.84 Recombinase zinc beta ribbon domain Xrn1_D3 PF18194.1 71 pGCA_001936355_00002 - 628 0.12 12.5 0.5 1 2 0.00011 0.38 10.9 0.1 2 28 376 402 375 412 0.91 Exoribonuclease 1 Domain-3 Xrn1_D3 PF18194.1 71 pGCA_001936355_00002 - 628 0.12 12.5 0.5 2 2 4.2 1.5e+04 -3.8 0.0 33 50 464 481 459 484 0.73 Exoribonuclease 1 Domain-3 TnpV PF14198.6 112 pGCA_001936355_00003 - 114 3.3e-41 139.8 0.5 1 1 2e-45 3.6e-41 139.6 0.5 1 112 4 112 4 112 0.99 Transposon-encoded protein TnpV AAA_18 PF13238.6 130 pGCA_001936355_00004 - 172 1.2e-14 55.0 0.0 1 1 4e-17 1.5e-14 54.6 0.0 1 122 7 133 7 141 0.78 AAA domain AAA_33 PF13671.6 143 pGCA_001936355_00004 - 172 2.4e-11 44.0 0.0 1 1 7.5e-14 2.9e-11 43.7 0.0 2 136 7 144 6 147 0.80 AAA domain CPT PF07931.12 174 pGCA_001936355_00004 - 172 2.8e-10 40.3 0.0 1 1 1.4e-12 5.4e-10 39.4 0.0 1 170 4 170 4 172 0.79 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 199 pGCA_001936355_00004 - 172 1.5e-07 30.9 0.0 1 1 7.8e-10 3.1e-07 29.9 0.0 18 160 6 138 2 169 0.77 Zeta toxin AAA_28 PF13521.6 163 pGCA_001936355_00004 - 172 3.6e-06 27.3 0.2 1 2 2.5e-08 9.9e-06 25.9 0.0 2 65 7 74 6 86 0.73 AAA domain AAA_28 PF13521.6 163 pGCA_001936355_00004 - 172 3.6e-06 27.3 0.2 2 2 4.3 1.7e+03 -0.9 0.0 34 127 99 125 88 159 0.52 AAA domain AAA PF00004.29 132 pGCA_001936355_00004 - 172 8.3e-06 26.3 0.0 1 2 1.3e-07 5.1e-05 23.7 0.0 2 25 8 31 7 83 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_001936355_00004 - 172 8.3e-06 26.3 0.0 2 2 1.8 6.9e+02 0.6 0.0 112 131 116 135 96 168 0.67 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 136 pGCA_001936355_00004 - 172 8.6e-06 26.2 0.0 1 1 8.7e-08 3.4e-05 24.3 0.0 1 128 10 131 10 138 0.76 AAA domain AAA_22 PF13401.6 137 pGCA_001936355_00004 - 172 1.5e-05 25.3 0.0 1 2 1.4e-07 5.4e-05 23.5 0.0 4 43 3 42 1 88 0.83 AAA domain AAA_22 PF13401.6 137 pGCA_001936355_00004 - 172 1.5e-05 25.3 0.0 2 2 3.3 1.3e+03 -0.4 0.0 61 97 120 155 91 162 0.70 AAA domain AAA_14 PF13173.6 131 pGCA_001936355_00004 - 172 5.9e-05 23.1 0.0 1 1 2.1e-07 8e-05 22.7 0.0 2 123 4 137 3 145 0.74 AAA domain AAA_16 PF13191.6 170 pGCA_001936355_00004 - 172 0.00029 21.2 0.0 1 1 9.3e-07 0.00036 21.0 0.0 22 61 2 42 1 134 0.81 AAA ATPase domain DUF2075 PF09848.9 363 pGCA_001936355_00004 - 172 0.00097 18.5 0.3 1 1 2.9e-06 0.0011 18.2 0.3 2 27 5 32 4 146 0.89 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 146 pGCA_001936355_00004 - 172 0.0016 18.8 0.0 1 1 8.4e-06 0.0033 17.8 0.0 9 39 3 33 1 49 0.84 AAA domain KTI12 PF08433.10 272 pGCA_001936355_00004 - 172 0.0016 18.0 0.1 1 2 8.8e-06 0.0034 16.9 0.0 3 42 6 44 5 87 0.76 Chromatin associated protein KTI12 KTI12 PF08433.10 272 pGCA_001936355_00004 - 172 0.0016 18.0 0.1 2 2 4.5 1.8e+03 -1.9 0.0 120 122 126 128 100 165 0.54 Chromatin associated protein KTI12 AAA_30 PF13604.6 192 pGCA_001936355_00004 - 172 0.0021 17.8 0.1 1 1 8.8e-06 0.0034 17.1 0.1 17 40 3 26 1 40 0.84 AAA domain AAA_24 PF13479.6 197 pGCA_001936355_00004 - 172 0.0022 17.8 0.3 1 1 9.1e-06 0.0036 17.1 0.3 3 33 5 40 3 172 0.76 AAA domain ABC_tran PF00005.27 137 pGCA_001936355_00004 - 172 0.0025 18.3 0.0 1 1 7.5e-06 0.0029 18.1 0.0 9 51 2 43 1 147 0.82 ABC transporter TIP49 PF06068.13 351 pGCA_001936355_00004 - 172 0.0047 16.2 0.3 1 2 4.6e-05 0.018 14.3 0.0 50 75 4 29 1 46 0.81 TIP49 P-loop domain TIP49 PF06068.13 351 pGCA_001936355_00004 - 172 0.0047 16.2 0.3 2 2 1.2 4.9e+02 -0.3 0.2 141 182 119 160 99 169 0.71 TIP49 P-loop domain APS_kinase PF01583.20 158 pGCA_001936355_00004 - 172 0.0047 16.8 0.0 1 2 0.00023 0.088 12.7 0.0 1 46 3 46 3 95 0.65 Adenylylsulphate kinase APS_kinase PF01583.20 158 pGCA_001936355_00004 - 172 0.0047 16.8 0.0 2 2 0.33 1.3e+02 2.4 0.0 45 76 119 150 98 167 0.86 Adenylylsulphate kinase ATPase PF06745.13 231 pGCA_001936355_00004 - 172 0.0061 15.9 0.7 1 2 3.8e-05 0.015 14.7 0.1 18 38 3 23 1 39 0.87 KaiC ATPase PF06745.13 231 pGCA_001936355_00004 - 172 0.0061 15.9 0.7 2 2 2.3 9e+02 -1.0 0.1 98 120 124 149 100 169 0.47 KaiC T2SSE PF00437.20 273 pGCA_001936355_00004 - 172 0.011 14.9 0.0 1 1 3.9e-05 0.015 14.3 0.0 130 154 5 29 1 71 0.87 Type II/IV secretion system protein DnaB_C PF03796.15 255 pGCA_001936355_00004 - 172 0.015 14.7 0.5 1 2 0.0002 0.077 12.3 0.0 17 47 2 32 1 41 0.84 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_001936355_00004 - 172 0.015 14.7 0.5 2 2 0.77 3e+02 0.5 0.1 49 92 104 144 96 171 0.45 DnaB-like helicase C terminal domain SRP54 PF00448.22 196 pGCA_001936355_00004 - 172 0.015 14.9 0.1 1 1 8.6e-05 0.033 13.8 0.0 3 40 6 42 4 46 0.81 SRP54-type protein, GTPase domain ATPase_2 PF01637.18 233 pGCA_001936355_00004 - 172 0.015 15.2 0.1 1 2 0.0024 0.93 9.4 0.0 19 54 3 38 1 67 0.80 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pGCA_001936355_00004 - 172 0.015 15.2 0.1 2 2 0.09 35 4.2 0.1 48 93 102 151 95 172 0.61 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 168 pGCA_001936355_00004 - 172 0.016 15.1 0.5 1 1 8.1e-05 0.031 14.2 0.2 2 22 7 27 6 37 0.88 NTPase Viral_helicase1 PF01443.18 234 pGCA_001936355_00004 - 172 0.016 14.9 0.0 1 1 6.2e-05 0.024 14.4 0.0 1 60 7 75 7 89 0.66 Viral (Superfamily 1) RNA helicase RuvB_N PF05496.12 159 pGCA_001936355_00004 - 172 0.018 14.8 0.1 1 2 0.00019 0.073 12.8 0.0 36 59 7 30 3 47 0.86 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 pGCA_001936355_00004 - 172 0.018 14.8 0.1 2 2 2.8 1.1e+03 -0.7 0.0 96 139 111 158 102 164 0.58 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 194 pGCA_001936355_00004 - 172 0.018 14.6 0.3 1 3 0.00017 0.066 12.8 0.1 32 54 3 25 1 28 0.88 AAA domain AAA_25 PF13481.6 194 pGCA_001936355_00004 - 172 0.018 14.6 0.3 2 3 7 2.7e+03 -2.3 0.0 118 174 56 74 30 85 0.48 AAA domain AAA_25 PF13481.6 194 pGCA_001936355_00004 - 172 0.018 14.6 0.3 3 3 4.7 1.8e+03 -1.7 0.0 63 89 96 121 92 162 0.53 AAA domain Cytidylate_kin2 PF13189.6 179 pGCA_001936355_00004 - 172 0.024 14.8 0.2 1 2 0.036 14 5.7 0.1 1 22 6 27 6 33 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 pGCA_001936355_00004 - 172 0.024 14.8 0.2 2 2 0.011 4.2 7.5 0.0 108 147 99 138 41 143 0.88 Cytidylate kinase-like family Rad17 PF03215.15 186 pGCA_001936355_00004 - 172 0.03 14.3 0.0 1 2 0.00038 0.15 12.0 0.0 45 69 4 28 1 41 0.87 Rad17 P-loop domain Rad17 PF03215.15 186 pGCA_001936355_00004 - 172 0.03 14.3 0.0 2 2 1.9 7.4e+02 -0.1 0.0 113 146 110 145 98 164 0.71 Rad17 P-loop domain Hydin_ADK PF17213.3 198 pGCA_001936355_00004 - 172 0.032 14.5 0.7 1 1 0.00013 0.05 13.9 0.2 2 22 7 27 6 31 0.92 Hydin Adenylate kinase-like domain NB-ARC PF00931.22 252 pGCA_001936355_00004 - 172 0.037 13.2 0.0 1 1 0.00017 0.065 12.4 0.0 21 47 5 30 1 49 0.84 NB-ARC domain MKT1_N PF12247.8 90 pGCA_001936355_00004 - 172 0.04 14.3 0.0 1 1 0.00022 0.084 13.2 0.0 14 52 39 75 35 160 0.90 Temperature dependent protein affecting M2 dsRNA replication ArsA_ATPase PF02374.15 305 pGCA_001936355_00004 - 172 0.042 13.0 0.1 1 2 0.00023 0.089 12.0 0.0 2 44 5 46 4 84 0.80 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 pGCA_001936355_00004 - 172 0.042 13.0 0.1 2 2 4.6 1.8e+03 -2.2 0.0 265 278 134 147 105 169 0.50 Anion-transporting ATPase NACHT PF05729.12 166 pGCA_001936355_00004 - 172 0.045 13.7 0.0 1 1 0.00016 0.064 13.2 0.0 1 31 5 35 5 74 0.75 NACHT domain AAA_11 PF13086.6 261 pGCA_001936355_00004 - 172 0.046 13.5 1.0 1 1 0.00017 0.067 13.0 0.9 16 41 3 28 1 164 0.90 AAA domain RNA_helicase PF00910.22 107 pGCA_001936355_00004 - 172 0.047 14.1 0.0 1 1 0.00022 0.086 13.2 0.0 1 35 7 42 7 77 0.71 RNA helicase Sigma54_activat PF00158.26 168 pGCA_001936355_00004 - 172 0.053 13.2 0.0 1 1 0.00023 0.091 12.5 0.0 25 67 7 56 1 89 0.73 Sigma-54 interaction domain GvpD PF07088.11 484 pGCA_001936355_00004 - 172 0.054 12.1 0.3 1 3 0.00096 0.38 9.3 0.0 9 26 3 20 1 39 0.87 GvpD gas vesicle protein GvpD PF07088.11 484 pGCA_001936355_00004 - 172 0.054 12.1 0.3 2 3 0.46 1.8e+02 0.5 0.0 31 64 97 129 79 146 0.67 GvpD gas vesicle protein GvpD PF07088.11 484 pGCA_001936355_00004 - 172 0.054 12.1 0.3 3 3 1.5 6e+02 -1.2 0.0 363 390 120 147 104 163 0.74 GvpD gas vesicle protein AAA_7 PF12775.7 181 pGCA_001936355_00004 - 172 0.056 13.0 0.2 1 2 0.00028 0.11 12.0 0.0 31 64 2 35 1 47 0.83 P-loop containing dynein motor region AAA_7 PF12775.7 181 pGCA_001936355_00004 - 172 0.056 13.0 0.2 2 2 5.8 2.2e+03 -2.0 0.0 74 90 116 132 97 166 0.59 P-loop containing dynein motor region IstB_IS21 PF01695.17 178 pGCA_001936355_00004 - 172 0.073 12.8 0.1 1 2 0.0004 0.16 11.7 0.0 48 70 5 27 1 47 0.84 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_001936355_00004 - 172 0.073 12.8 0.1 2 2 9.2 3.6e+03 -2.5 0.0 133 148 99 114 96 136 0.63 IstB-like ATP binding protein PhoH PF02562.16 205 pGCA_001936355_00004 - 172 0.076 12.5 0.1 1 1 0.00043 0.17 11.3 0.1 18 43 3 28 1 36 0.81 PhoH-like protein Ploopntkinase1 PF18748.1 196 pGCA_001936355_00004 - 172 0.086 12.4 0.0 1 2 0.22 86 2.6 0.0 16 41 3 29 1 41 0.78 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 pGCA_001936355_00004 - 172 0.086 12.4 0.0 2 2 0.005 2 7.9 0.0 93 164 72 143 56 152 0.75 P-loop Nucleotide Kinase1 ATP-synt_ab PF00006.25 213 pGCA_001936355_00004 - 172 0.086 12.5 0.0 1 1 0.00024 0.094 12.4 0.0 12 71 2 121 1 140 0.68 ATP synthase alpha/beta family, nucleotide-binding domain IPT PF01745.16 233 pGCA_001936355_00004 - 172 0.098 12.0 0.2 1 2 0.00062 0.24 10.7 0.1 3 25 6 28 4 42 0.91 Isopentenyl transferase IPT PF01745.16 233 pGCA_001936355_00004 - 172 0.098 12.0 0.2 2 2 3.8 1.5e+03 -1.6 0.0 193 211 126 144 81 156 0.63 Isopentenyl transferase Ploopntkinase3 PF18751.1 185 pGCA_001936355_00004 - 172 0.11 12.4 0.4 1 2 0.00095 0.37 10.7 0.0 3 33 4 34 1 49 0.80 P-loop Nucleotide Kinase3 Ploopntkinase3 PF18751.1 185 pGCA_001936355_00004 - 172 0.11 12.4 0.4 2 2 4.5 1.7e+03 -1.3 0.0 108 145 101 139 94 155 0.68 P-loop Nucleotide Kinase3 CoaE PF01121.20 179 pGCA_001936355_00004 - 172 0.18 11.5 0.7 1 2 0.026 10 5.7 0.1 2 21 6 25 5 31 0.87 Dephospho-CoA kinase CoaE PF01121.20 179 pGCA_001936355_00004 - 172 0.18 11.5 0.7 2 2 0.074 29 4.3 0.0 125 149 108 132 95 146 0.82 Dephospho-CoA kinase APH PF01636.23 240 pGCA_001936355_00005 - 305 8.6e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pGCA_001936355_00005 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pGCA_001936355_00005 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pGCA_001936355_00005 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pGCA_001936355_00005 - 305 0.09 12.4 0.4 1 1 5.2e-05 0.15 11.6 0.4 68 119 244 294 238 303 0.88 TMEM95 family EcKinase PF02958.20 294 pGCA_001936355_00005 - 305 0.098 12.0 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 pGCA_001936355_00006 - 139 1.3e-51 175.6 0.1 1 1 8.3e-56 1.5e-51 175.5 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase APH PF01636.23 240 pGCA_001936355_00007 - 250 6.8e-11 42.6 0.0 1 1 9.1e-15 8.1e-11 42.3 0.0 34 218 45 220 16 242 0.81 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pGCA_001936355_00007 - 250 0.014 14.6 0.1 1 2 0.00011 1 8.5 0.0 52 94 44 84 11 91 0.72 Fructosamine kinase Fructosamin_kin PF03881.14 288 pGCA_001936355_00007 - 250 0.014 14.6 0.1 2 2 0.0019 17 4.5 0.1 184 251 168 237 107 246 0.75 Fructosamine kinase CPT PF07931.12 174 pGCA_001936355_00008 - 146 4e-06 26.8 0.0 1 1 1.4e-09 4.9e-06 26.5 0.0 59 172 20 137 11 139 0.78 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 130 pGCA_001936355_00008 - 146 9.4e-06 26.2 0.0 1 1 3.2e-09 1.2e-05 25.9 0.0 46 122 15 98 1 106 0.77 AAA domain AAA_33 PF13671.6 143 pGCA_001936355_00008 - 146 0.00063 19.9 0.0 1 1 2.2e-07 0.0008 19.6 0.0 55 136 30 109 9 112 0.82 AAA domain MKT1_N PF12247.8 90 pGCA_001936355_00008 - 146 0.027 14.8 0.0 1 1 1.7e-05 0.063 13.6 0.0 15 52 5 40 3 131 0.90 Temperature dependent protein affecting M2 dsRNA replication AAA_17 PF13207.6 136 pGCA_001936355_00008 - 146 0.14 12.6 0.0 1 1 5.4e-05 0.19 12.1 0.0 55 128 27 96 12 103 0.73 AAA domain DUF3847 PF12958.7 81 pGCA_001936355_00009 - 119 1.8e-31 108.1 8.2 1 1 5.7e-35 2.6e-31 107.6 8.2 1 81 6 89 6 89 0.98 Protein of unknown function (DUF3847) CENP-Q PF13094.6 168 pGCA_001936355_00009 - 119 0.034 14.3 11.9 1 1 9.8e-06 0.044 14.0 11.9 46 96 5 56 2 115 0.74 CENP-Q, a CENPA-CAD centromere complex subunit TPR_8 PF13181.6 34 pGCA_001936355_00009 - 119 0.078 13.2 0.1 1 1 4.4e-05 0.2 12.0 0.1 6 27 20 41 16 48 0.89 Tetratricopeptide repeat PHM7_cyt PF14703.6 176 pGCA_001936355_00009 - 119 4.2 7.6 7.2 1 1 0.0015 6.6 6.9 7.2 40 87 3 56 1 111 0.75 Cytosolic domain of 10TM putative phosphate transporter MobA_MobL PF03389.15 222 pGCA_001936355_00010 - 183 3.5e-50 170.8 0.0 1 1 2.2e-54 3.9e-50 170.6 0.0 1 133 17 154 17 178 0.95 MobA/MobL family AAA_25 PF13481.6 194 pGCA_001936355_00011 - 623 4.9e-30 104.5 0.0 1 1 8.5e-33 8.9e-30 103.7 0.0 11 193 306 475 297 476 0.87 AAA domain Toprim_2 PF13155.6 90 pGCA_001936355_00011 - 623 6.6e-18 64.9 0.0 1 2 2.4e-20 2.5e-17 63.1 0.0 1 90 189 278 189 278 0.91 Toprim-like Toprim_2 PF13155.6 90 pGCA_001936355_00011 - 623 6.6e-18 64.9 0.0 2 2 4.5 4.7e+03 -1.9 0.1 44 77 393 427 381 441 0.75 Toprim-like DUF3991 PF13154.6 76 pGCA_001936355_00011 - 623 3.3e-14 53.0 0.0 1 2 1.6e-16 1.7e-13 50.7 0.0 1 74 112 183 112 185 0.93 Protein of unknown function (DUF3991) DUF3991 PF13154.6 76 pGCA_001936355_00011 - 623 3.3e-14 53.0 0.0 2 2 2.8 3e+03 -1.3 0.0 6 19 589 602 587 620 0.71 Protein of unknown function (DUF3991) DnaB_C PF03796.15 255 pGCA_001936355_00011 - 623 8.6e-09 35.1 0.0 1 2 0.00037 0.39 10.0 0.0 19 45 329 355 326 366 0.87 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_001936355_00011 - 623 8.6e-09 35.1 0.0 2 2 4.7e-08 4.9e-05 22.8 0.0 90 185 385 478 369 490 0.79 DnaB-like helicase C terminal domain Toprim_3 PF13362.6 95 pGCA_001936355_00011 - 623 1.8e-08 34.6 0.2 1 2 4.2e-10 4.4e-07 30.2 0.0 2 92 188 281 187 283 0.86 Toprim domain Toprim_3 PF13362.6 95 pGCA_001936355_00011 - 623 1.8e-08 34.6 0.2 2 2 0.46 4.8e+02 1.2 0.6 40 85 393 439 381 446 0.77 Toprim domain ATPase PF06745.13 231 pGCA_001936355_00011 - 623 7.2e-06 25.5 0.1 1 1 1.9e-07 0.0002 20.8 0.0 16 171 326 478 324 511 0.73 KaiC AAA_22 PF13401.6 137 pGCA_001936355_00011 - 623 0.0002 21.6 0.0 1 1 5.5e-07 0.00058 20.2 0.0 6 130 330 470 329 475 0.76 AAA domain NACHT PF05729.12 166 pGCA_001936355_00011 - 623 0.0033 17.4 0.0 1 2 1.1 1.1e+03 -0.7 0.0 43 71 6 33 3 43 0.76 NACHT domain NACHT PF05729.12 166 pGCA_001936355_00011 - 623 0.0033 17.4 0.0 2 2 2.5e-05 0.027 14.4 0.0 2 28 331 357 330 429 0.89 NACHT domain Toprim_4 PF13662.6 89 pGCA_001936355_00011 - 623 0.0078 16.7 0.0 1 1 2.5e-05 0.026 15.0 0.0 47 88 227 267 212 268 0.81 Toprim domain AAA_5 PF07728.14 138 pGCA_001936355_00011 - 623 0.018 15.0 0.0 1 1 6e-05 0.063 13.3 0.0 3 26 333 357 332 406 0.82 AAA domain (dynein-related subfamily) Rad51 PF08423.11 255 pGCA_001936355_00011 - 623 0.05 12.8 0.0 1 1 0.00051 0.54 9.5 0.0 34 190 326 475 324 494 0.69 Rad51 Toprim PF01751.22 103 pGCA_001936355_00011 - 623 0.051 13.8 0.0 1 1 0.00011 0.12 12.7 0.0 51 87 222 258 204 269 0.85 Toprim domain AAA_11 PF13086.6 261 pGCA_001936355_00011 - 623 0.065 13.0 0.0 1 2 0.24 2.6e+02 1.2 0.0 50 97 230 271 208 294 0.80 AAA domain AAA_11 PF13086.6 261 pGCA_001936355_00011 - 623 0.065 13.0 0.0 2 2 0.00095 1 9.1 0.0 18 43 330 355 320 400 0.76 AAA domain RNA_helicase PF00910.22 107 pGCA_001936355_00011 - 623 0.13 12.7 0.0 1 2 2.6 2.8e+03 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 pGCA_001936355_00011 - 623 0.13 12.7 0.0 2 2 0.00069 0.73 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase PhoH PF02562.16 205 pGCA_001936355_00011 - 623 0.17 11.3 0.0 1 1 0.00034 0.36 10.3 0.0 20 47 330 357 322 362 0.88 PhoH-like protein zf-CHC2 PF01807.20 98 pGCA_001936355_00011 - 623 0.18 11.7 0.0 1 1 0.00035 0.37 10.6 0.0 44 88 40 82 8 90 0.84 CHC2 zinc finger DUF2075 PF09848.9 363 pGCA_001936355_00011 - 623 0.2 10.8 0.0 1 1 0.00031 0.33 10.2 0.0 2 26 330 354 329 398 0.89 Uncharacterized conserved protein (DUF2075) IMS_C PF11799.8 118 pGCA_001936355_00012 - 236 1.1e-12 48.7 0.0 1 1 2.1e-16 1.9e-12 48.0 0.0 8 111 94 221 90 226 0.91 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 32 pGCA_001936355_00012 - 236 0.00028 21.0 0.1 1 1 7.5e-08 0.00067 19.8 0.1 6 32 19 46 16 46 0.92 IMS family HHH motif DUF447 PF04289.12 176 pGCA_001936355_00014 - 130 0.029 14.2 0.1 1 1 7.3e-06 0.044 13.6 0.1 42 111 21 87 19 97 0.84 Protein of unknown function (DUF447) WH1 PF00568.23 111 pGCA_001936355_00014 - 130 0.032 14.1 0.3 1 1 8.2e-06 0.049 13.6 0.2 10 80 29 98 20 108 0.85 WH1 domain Cob_adeno_trans PF01923.18 164 pGCA_001936355_00014 - 130 0.04 14.0 0.1 1 1 9.1e-06 0.054 13.6 0.1 26 104 38 127 34 130 0.78 Cobalamin adenosyltransferase DUF3825 PF12873.7 239 pGCA_001936355_00015 - 335 4.2e-29 101.7 0.3 1 1 3.7e-33 6.7e-29 101.0 0.3 1 239 106 330 106 330 0.86 Domain of unknown function (DUF3825) SGT1 PF07093.11 583 pGCA_001936355_00017 - 50 0.046 12.2 2.7 1 1 7.5e-06 0.045 12.2 2.7 511 553 7 49 1 50 0.79 SGT1 protein PG_binding_4 PF12229.8 114 pGCA_001936355_00017 - 50 0.057 13.7 1.0 1 1 1.1e-05 0.065 13.5 1.0 42 79 10 48 2 50 0.81 Putative peptidoglycan binding domain DUF2175 PF09943.9 98 pGCA_001936355_00017 - 50 0.077 13.3 1.2 1 1 1.4e-05 0.082 13.2 1.2 60 89 9 38 2 47 0.83 Uncharacterized protein conserved in archaea (DUF2175) DUF5309 PF17236.2 280 pGCA_001936355_00018 - 81 3.1e-05 23.5 0.5 1 1 1.8e-09 3.3e-05 23.4 0.5 4 53 24 74 21 81 0.82 Family of unknown function (DUF5309) HicA_toxin PF07927.12 58 pGCA_001936355_00019 - 75 1.7e-06 28.0 0.0 1 1 1.4e-10 2.5e-06 27.4 0.0 5 55 24 71 20 72 0.88 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pGCA_001936355_00020 - 119 8.3e-09 35.6 0.3 1 2 4.2e-06 0.038 14.1 0.0 1 60 12 74 12 79 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 pGCA_001936355_00020 - 119 8.3e-09 35.6 0.3 2 2 3.9e-08 0.00035 20.7 0.1 88 123 77 108 72 108 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 pGCA_001936355_00020 - 119 0.15 11.9 0.0 1 1 3.3e-05 0.29 11.0 0.0 3 35 80 112 79 115 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 ParE_toxin PF05016.15 90 pGCA_001936355_00022 - 93 1.1e-07 32.4 0.1 1 1 6.6e-12 1.2e-07 32.3 0.1 4 82 6 85 3 89 0.87 ParE toxin of type II toxin-antitoxin system, parDE YafQ_toxin PF15738.5 88 pGCA_001936355_00024 - 91 8.9e-29 99.7 1.1 1 1 5.4e-33 9.7e-29 99.5 1.1 2 88 3 89 2 89 0.98 Bacterial toxin of type II toxin-antitoxin system, YafQ DUF4131 PF13567.6 167 pGCA_001936355_00025 - 106 0.0008 19.1 0.1 1 1 2.8e-07 0.001 18.8 0.1 3 83 19 97 17 100 0.70 Domain of unknown function (DUF4131) DUF981 PF06168.11 187 pGCA_001936355_00025 - 106 0.015 15.2 3.3 1 1 5.2e-06 0.019 14.9 3.3 119 175 9 66 4 73 0.87 Protein of unknown function (DUF981) Wzy_C PF04932.15 155 pGCA_001936355_00025 - 106 0.056 13.1 1.3 1 1 1.8e-05 0.064 12.9 1.3 19 65 24 71 19 96 0.81 O-Antigen ligase DUF2663 PF10864.8 127 pGCA_001936355_00025 - 106 0.13 12.7 2.1 1 1 4.5e-05 0.16 12.4 2.1 8 80 9 81 2 86 0.58 Protein of unknown function (DUF2663) DUF2721 PF11026.8 129 pGCA_001936355_00025 - 106 0.27 11.1 5.3 1 1 9.5e-05 0.34 10.8 5.3 59 118 12 66 3 69 0.85 Protein of unknown function (DUF2721) TraG_N PF07916.11 467 pGCA_001936355_00026 - 900 8.5e-39 133.7 20.1 1 4 4.8e-43 8.5e-39 133.7 20.1 38 465 23 446 1 452 0.77 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pGCA_001936355_00026 - 900 8.5e-39 133.7 20.1 2 4 0.093 1.7e+03 -2.5 0.9 267 318 538 590 504 606 0.53 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pGCA_001936355_00026 - 900 8.5e-39 133.7 20.1 3 4 0.15 2.7e+03 -3.1 3.1 246 307 686 745 646 776 0.48 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pGCA_001936355_00026 - 900 8.5e-39 133.7 20.1 4 4 0.66 1.2e+04 -5.3 6.2 229 319 809 885 798 899 0.45 TraG-like protein, N-terminal region Glyco_tranf_2_5 PF13712.6 210 pGCA_001936355_00027 - 267 0.00068 19.4 3.8 1 1 7.1e-08 0.0013 18.5 3.8 4 77 114 190 111 198 0.85 Glycosyltransferase like family UvrA_DNA-bind PF17755.1 110 pGCA_001936355_00028 - 422 0.00087 19.6 0.5 1 2 1.8e-05 0.32 11.4 0.1 24 65 32 73 19 86 0.82 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pGCA_001936355_00028 - 422 0.00087 19.6 0.5 2 2 0.00078 14 6.1 0.0 15 33 92 109 88 127 0.77 UvrA DNA-binding domain SseC PF04888.12 317 pGCA_001936355_00030 - 1310 0.0051 16.5 0.2 1 1 3e-06 0.014 15.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family ThrE PF06738.12 241 pGCA_001936355_00030 - 1310 0.014 14.8 0.8 1 1 7.8e-06 0.035 13.5 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter APOBEC_C PF05240.14 78 pGCA_001936355_00030 - 1310 0.018 15.0 0.5 1 1 2e-05 0.091 12.7 0.5 26 76 766 819 755 821 0.86 APOBEC-like C-terminal domain Hormone_2 PF00123.20 28 pGCA_001936355_00030 - 1310 0.035 14.0 0.1 1 1 3.5e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone Phage_lysozyme PF00959.19 109 pGCA_001936355_00032 - 632 1.2e-10 41.8 1.2 1 2 0.95 8.5e+03 -2.8 0.1 17 37 323 343 306 360 0.73 Phage lysozyme Phage_lysozyme PF00959.19 109 pGCA_001936355_00032 - 632 1.2e-10 41.8 1.2 2 2 2.2e-14 1.9e-10 41.1 0.1 3 108 521 630 519 631 0.86 Phage lysozyme Vta1 PF04652.16 145 pGCA_001936355_00032 - 632 2.2 8.3 10.2 1 4 0.44 4e+03 -2.3 0.1 116 137 148 170 139 173 0.79 Vta1 like Vta1 PF04652.16 145 pGCA_001936355_00032 - 632 2.2 8.3 10.2 2 4 0.15 1.4e+03 -0.8 0.2 29 61 317 357 312 369 0.69 Vta1 like Vta1 PF04652.16 145 pGCA_001936355_00032 - 632 2.2 8.3 10.2 3 4 6e-06 0.054 13.5 1.0 8 80 392 468 384 481 0.81 Vta1 like Vta1 PF04652.16 145 pGCA_001936355_00032 - 632 2.2 8.3 10.2 4 4 0.19 1.7e+03 -1.1 0.0 21 58 464 501 463 516 0.80 Vta1 like DUF2974 PF11187.8 224 pGCA_001936355_00033 - 511 1.4e-06 28.0 0.0 1 1 1.5e-09 3.4e-06 26.8 0.0 6 109 79 192 75 260 0.72 Protein of unknown function (DUF2974) Lipase_3 PF01764.25 142 pGCA_001936355_00033 - 511 1e-05 25.4 0.0 1 1 2.1e-08 4.6e-05 23.3 0.0 45 107 148 218 108 243 0.78 Lipase (class 3) DUF676 PF05057.14 219 pGCA_001936355_00033 - 511 0.0019 17.7 0.0 1 1 2.1e-06 0.0046 16.5 0.0 70 116 158 205 129 247 0.73 Putative serine esterase (DUF676) PGAP1 PF07819.13 231 pGCA_001936355_00033 - 511 0.0036 17.0 0.1 1 2 5e-05 0.11 12.2 0.0 69 116 148 193 144 201 0.76 PGAP1-like protein PGAP1 PF07819.13 231 pGCA_001936355_00033 - 511 0.0036 17.0 0.1 2 2 0.06 1.4e+02 2.1 0.2 27 83 269 326 247 340 0.76 PGAP1-like protein DUF4450 PF14614.6 217 pGCA_001936355_00033 - 511 0.016 14.8 0.2 1 2 2.9 6.5e+03 -3.5 0.0 156 173 340 357 330 359 0.71 Domain of unknown function (DUF4450) DUF4450 PF14614.6 217 pGCA_001936355_00033 - 511 0.016 14.8 0.2 2 2 2.1e-05 0.047 13.3 0.1 6 48 446 488 443 495 0.94 Domain of unknown function (DUF4450) UPF0227 PF05728.12 187 pGCA_001936355_00033 - 511 0.028 14.4 0.1 1 2 9.1e-05 0.2 11.6 0.0 48 80 157 189 133 196 0.80 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pGCA_001936355_00033 - 511 0.028 14.4 0.1 2 2 0.39 8.7e+02 -0.3 0.0 115 145 391 422 368 439 0.73 Uncharacterised protein family (UPF0227) PAF-AH_p_II PF03403.13 379 pGCA_001936355_00033 - 511 0.028 13.0 0.0 1 1 2.2e-05 0.05 12.1 0.0 185 244 120 184 94 210 0.77 Platelet-activating factor acetylhydrolase, isoform II Abhydrolase_6 PF12697.7 220 pGCA_001936355_00033 - 511 0.049 14.2 0.0 1 1 3.1e-05 0.069 13.7 0.0 49 86 148 189 103 236 0.62 Alpha/beta hydrolase family DUF2974 PF11187.8 224 pGCA_001936355_00034 - 215 0.0024 17.4 0.1 1 2 0.39 2.3e+03 -2.1 0.0 137 159 74 98 58 101 0.68 Protein of unknown function (DUF2974) DUF2974 PF11187.8 224 pGCA_001936355_00034 - 215 0.0024 17.4 0.1 2 2 1.2e-06 0.007 16.0 0.0 20 94 131 209 117 211 0.77 Protein of unknown function (DUF2974) DUF676 PF05057.14 219 pGCA_001936355_00034 - 215 0.05 13.1 0.0 1 1 1.6e-05 0.096 12.2 0.0 63 91 183 211 143 213 0.73 Putative serine esterase (DUF676) Lipase_3 PF01764.25 142 pGCA_001936355_00034 - 215 0.11 12.3 0.1 1 1 7.3e-05 0.44 10.4 0.1 50 75 185 209 159 210 0.80 Lipase (class 3) DUF3810 PF12725.7 310 pGCA_001936355_00035 - 212 0.0026 17.2 5.2 1 1 6.4e-07 0.0029 17.0 5.2 20 117 9 106 1 185 0.59 Protein of unknown function (DUF3810) CitMHS PF03600.16 300 pGCA_001936355_00035 - 212 0.023 13.9 0.3 1 1 5.2e-06 0.023 13.9 0.3 147 221 4 67 1 158 0.80 Citrate transporter Yip1 PF04893.17 172 pGCA_001936355_00035 - 212 0.11 12.2 5.7 1 1 3.5e-05 0.16 11.7 5.7 64 120 6 68 2 76 0.85 Yip1 domain Spo7 PF03907.13 221 pGCA_001936355_00035 - 212 1.8 7.9 10.7 1 1 0.0009 4.1 6.8 10.3 33 92 16 70 12 176 0.75 Spo7-like protein Lipase_3 PF01764.25 142 pGCA_001936355_00038 - 245 1.5e-08 34.6 0.0 1 1 3.1e-11 5e-08 32.9 0.0 50 113 176 240 139 243 0.77 Lipase (class 3) DUF2974 PF11187.8 224 pGCA_001936355_00038 - 245 3.1e-08 33.4 0.0 1 1 3.1e-11 5e-08 32.8 0.0 7 123 100 233 95 236 0.71 Protein of unknown function (DUF2974) DUF676 PF05057.14 219 pGCA_001936355_00038 - 245 1.1e-05 25.0 0.1 1 1 1.4e-08 2.3e-05 24.0 0.1 63 117 174 227 168 235 0.71 Putative serine esterase (DUF676) PGAP1 PF07819.13 231 pGCA_001936355_00038 - 245 5.6e-05 23.0 0.1 1 1 5.9e-08 9.7e-05 22.2 0.1 46 114 128 213 98 235 0.75 PGAP1-like protein LIDHydrolase PF10230.9 266 pGCA_001936355_00038 - 245 0.00041 20.0 0.1 1 1 3.9e-07 0.00064 19.3 0.1 67 101 173 206 133 218 0.72 Lipid-droplet associated hydrolase Abhydrolase_6 PF12697.7 220 pGCA_001936355_00038 - 245 0.00064 20.4 0.0 1 1 5.3e-07 0.00086 20.0 0.0 51 86 175 211 138 241 0.75 Alpha/beta hydrolase family UPF0227 PF05728.12 187 pGCA_001936355_00038 - 245 0.0014 18.6 0.3 1 2 1.3 2.1e+03 -1.5 0.1 115 148 46 79 32 96 0.58 Uncharacterised protein family (UPF0227) UPF0227 PF05728.12 187 pGCA_001936355_00038 - 245 0.0014 18.6 0.3 2 2 2.2e-06 0.0036 17.3 0.0 24 80 154 211 143 227 0.68 Uncharacterised protein family (UPF0227) Palm_thioest PF02089.15 242 pGCA_001936355_00038 - 245 0.014 15.3 1.8 1 2 0.44 7.2e+02 -0.2 0.5 152 206 29 91 18 115 0.65 Palmitoyl protein thioesterase Palm_thioest PF02089.15 242 pGCA_001936355_00038 - 245 0.014 15.3 1.8 2 2 1.6e-05 0.027 14.3 0.0 30 88 158 212 137 231 0.74 Palmitoyl protein thioesterase NMT PF01233.19 160 pGCA_001936355_00038 - 245 0.079 12.8 0.2 1 1 7e-05 0.11 12.3 0.2 28 123 90 188 62 195 0.79 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain Hydrolase_4 PF12146.8 239 pGCA_001936355_00038 - 245 0.17 11.2 0.0 1 1 0.00017 0.28 10.4 0.0 65 94 181 208 169 224 0.67 Serine aminopeptidase, S33 Ser_hydrolase PF06821.13 171 pGCA_001936355_00038 - 245 0.17 11.7 0.0 1 1 0.00017 0.28 11.0 0.0 6 71 141 206 138 219 0.80 Serine hydrolase Put_DNA-bind_N PF06971.13 49 pGCA_001936355_00042 - 155 0.039 14.0 0.0 1 1 7.5e-06 0.067 13.2 0.0 11 34 4 27 3 30 0.94 Putative DNA-binding protein N-terminus ATG27 PF09451.10 264 pGCA_001936355_00042 - 155 0.071 13.0 0.6 1 1 1.4e-05 0.12 12.2 0.6 188 227 16 55 7 61 0.79 Autophagy-related protein 27 Toprim_3 PF13362.6 95 pGCA_001936355_00044 - 409 2.4e-08 34.2 0.1 1 2 1.4 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pGCA_001936355_00044 - 409 2.4e-08 34.2 0.1 2 2 1.4e-11 6.4e-08 32.9 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pGCA_001936355_00044 - 409 0.017 15.4 0.2 1 2 0.024 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pGCA_001936355_00044 - 409 0.017 15.4 0.2 2 2 0.00027 1.2 9.4 0.0 15 83 283 359 277 382 0.82 Retrotransposon gag protein DUF2315 PF10231.9 123 pGCA_001936355_00044 - 409 0.023 14.8 6.8 1 3 0.00028 1.3 9.2 0.0 37 116 39 135 26 143 0.82 Apoptogenic protein 1 DUF2315 PF10231.9 123 pGCA_001936355_00044 - 409 0.023 14.8 6.8 2 3 0.0016 7.4 6.7 2.6 23 58 158 193 137 215 0.77 Apoptogenic protein 1 DUF2315 PF10231.9 123 pGCA_001936355_00044 - 409 0.023 14.8 6.8 3 3 1.3 5.9e+03 -2.7 0.0 20 90 355 373 339 384 0.54 Apoptogenic protein 1 5_3_exonuc PF01367.20 97 pGCA_001936355_00044 - 409 0.25 12.0 1.7 1 2 0.62 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_001936355_00044 - 409 0.25 12.0 1.7 2 2 0.00012 0.53 10.9 0.2 15 81 322 384 321 401 0.72 5'-3' exonuclease, C-terminal SAM fold Abi_2 PF07751.11 179 pGCA_001936355_00045 - 225 0.0013 19.1 11.1 1 1 1.1e-07 0.002 18.4 11.1 41 177 29 176 3 178 0.66 Abi-like protein NYN PF01936.18 147 pGCA_001936355_00046 - 180 1.7e-10 41.6 0.0 1 1 3.1e-14 1.9e-10 41.4 0.0 60 123 74 146 15 161 0.80 NYN domain Peroxin-22 PF12827.7 113 pGCA_001936355_00046 - 180 0.0082 16.0 0.7 1 1 2.7e-06 0.016 15.1 0.7 25 105 81 162 46 169 0.76 Peroxisomal biogenesis protein family PIN7 PF18475.1 103 pGCA_001936355_00046 - 180 0.02 15.5 0.0 1 1 5.8e-06 0.035 14.8 0.0 57 103 99 142 77 142 0.88 PIN domain RHH_7 PF16777.5 74 pGCA_001936355_00047 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 pGCA_001936355_00047 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal AAA_31 PF13614.6 177 pGCA_001936355_00048 - 186 6.9e-05 22.8 0.5 1 2 2.1e-07 0.00093 19.2 0.1 3 26 2 25 1 31 0.91 AAA domain AAA_31 PF13614.6 177 pGCA_001936355_00048 - 186 6.9e-05 22.8 0.5 2 2 0.04 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pGCA_001936355_00048 - 186 0.001 19.1 0.5 1 1 1.9e-06 0.0086 16.1 0.5 1 55 3 89 3 167 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_001936355_00048 - 186 0.014 14.8 0.0 1 1 4.2e-06 0.019 14.4 0.0 17 109 69 171 61 180 0.77 short chain dehydrogenase ParA PF10609.9 246 pGCA_001936355_00048 - 186 0.17 11.3 0.0 1 1 5.9e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase DUF4223 PF13978.6 54 pGCA_001936355_00049 - 78 0.21 11.6 1.5 1 1 2e-05 0.36 10.8 1.5 1 26 1 27 1 41 0.79 Protein of unknown function (DUF4223) ZapB PF06005.12 71 pGCA_001936355_00050 - 32 0.094 13.2 0.1 1 1 5.3e-06 0.095 13.2 0.1 1 22 1 22 1 28 0.94 Cell division protein ZapB DUF1451 PF07295.11 147 pGCA_001936355_00051 - 67 0.00056 20.0 0.0 1 1 3.5e-08 0.00063 19.8 0.0 107 137 9 39 2 44 0.88 Zinc-ribbon containing domain DUF4145 PF13643.6 88 pGCA_001936355_00052 - 207 8.2e-17 61.1 3.4 1 2 8.1e-20 1.4e-15 57.1 0.1 1 76 87 161 87 172 0.91 Domain of unknown function (DUF4145) DUF4145 PF13643.6 88 pGCA_001936355_00052 - 207 8.2e-17 61.1 3.4 2 2 0.0019 34 4.7 0.6 21 52 177 203 161 207 0.77 Domain of unknown function (DUF4145) HicB_lk_antitox PF15919.5 123 pGCA_001936355_00054 - 72 1.8e-08 34.5 0.0 1 1 2.3e-12 2e-08 34.4 0.0 3 60 5 61 3 68 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 pGCA_001936355_00054 - 72 0.075 12.4 0.0 1 1 9.1e-06 0.082 12.3 0.0 12 61 21 70 15 72 0.94 IRSp53/MIM homology domain HicA_toxin PF07927.12 58 pGCA_001936355_00055 - 67 6.2e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pGCA_001936355_00056 - 599 1.7e-15 57.2 0.0 1 1 1.6e-18 3.5e-15 56.1 0.0 30 193 30 175 23 176 0.86 AAA domain DnaB_C PF03796.15 255 pGCA_001936355_00056 - 599 0.00066 19.1 0.0 1 2 3.2e-06 0.0072 15.7 0.0 16 109 30 128 25 134 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_001936355_00056 - 599 0.00066 19.1 0.0 2 2 0.016 36 3.6 0.0 121 183 112 176 96 180 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_001936355_00056 - 599 0.0016 18.2 0.0 1 2 1.1e-05 0.025 14.3 0.0 46 85 32 71 23 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_001936355_00056 - 599 0.0016 18.2 0.0 2 2 0.17 3.7e+02 0.7 0.0 96 118 108 130 98 169 0.74 IstB-like ATP binding protein AAA_24 PF13479.6 197 pGCA_001936355_00056 - 599 0.0031 17.3 0.0 1 1 2.9e-06 0.0066 16.2 0.0 5 122 36 172 32 206 0.73 AAA domain ATPase PF06745.13 231 pGCA_001936355_00056 - 599 0.0057 16.0 0.1 1 2 2e-05 0.044 13.1 0.0 16 71 30 84 25 214 0.73 KaiC ATPase PF06745.13 231 pGCA_001936355_00056 - 599 0.0057 16.0 0.1 2 2 0.74 1.7e+03 -1.9 0.0 137 160 329 352 322 358 0.84 KaiC AAA PF00004.29 132 pGCA_001936355_00056 - 599 0.07 13.6 0.7 1 3 0.0004 0.9 10.0 0.0 2 105 37 166 36 177 0.58 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_001936355_00056 - 599 0.07 13.6 0.7 2 3 0.41 9.1e+02 0.2 0.0 57 74 417 436 383 456 0.76 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_001936355_00056 - 599 0.07 13.6 0.7 3 3 4 9e+03 -3.0 0.0 23 49 497 525 477 529 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pGCA_001936355_00056 - 599 0.16 12.0 1.2 1 1 0.00026 0.59 10.2 1.2 1 29 35 63 35 550 0.93 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1947 PF09183.10 66 pGCA_001936355_00056 - 599 0.7 10.2 6.3 1 2 0.14 3e+02 1.8 0.2 23 46 245 269 237 271 0.78 Domain of unknown function (DUF1947) DUF1947 PF09183.10 66 pGCA_001936355_00056 - 599 0.7 10.2 6.3 2 2 0.00076 1.7 9.0 1.7 7 42 519 552 517 569 0.87 Domain of unknown function (DUF1947) RHH_7 PF16777.5 74 pGCA_001936355_00057 - 88 6.1e-06 26.5 1.0 1 1 7.7e-10 6.9e-06 26.4 1.0 4 69 15 81 1 85 0.83 Transcriptional regulator, RHH-like, CopG UXS1_N PF11803.8 75 pGCA_001936355_00057 - 88 0.03 14.7 0.0 1 1 4.2e-06 0.038 14.4 0.0 6 43 45 81 32 88 0.84 UDP-glucuronate decarboxylase N-terminal AAA_31 PF13614.6 177 pGCA_001936355_00058 - 186 6.9e-05 22.8 0.5 1 2 2.1e-07 0.00093 19.2 0.1 3 26 2 25 1 31 0.91 AAA domain AAA_31 PF13614.6 177 pGCA_001936355_00058 - 186 6.9e-05 22.8 0.5 2 2 0.04 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pGCA_001936355_00058 - 186 0.001 19.1 0.5 1 1 1.9e-06 0.0086 16.1 0.5 1 55 3 89 3 167 0.61 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_001936355_00058 - 186 0.014 14.8 0.0 1 1 4.2e-06 0.019 14.4 0.0 17 109 69 171 61 180 0.77 short chain dehydrogenase ParA PF10609.9 246 pGCA_001936355_00058 - 186 0.17 11.3 0.0 1 1 5.9e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase DUF4995 PF16386.5 73 pGCA_001936355_00059 - 66 0.14 12.2 0.7 1 1 1.7e-05 0.15 12.1 0.7 6 38 8 43 1 65 0.73 Domain of unknown function DUF4223 PF13978.6 54 pGCA_001936355_00059 - 66 0.2 11.6 1.9 1 1 3.1e-05 0.28 11.2 1.9 1 26 1 27 1 55 0.84 Protein of unknown function (DUF4223) CitMHS PF03600.16 300 pGCA_001936355_00064 - 200 0.0018 17.5 0.1 1 1 6e-07 0.0018 17.5 0.1 147 214 4 101 1 166 0.82 Citrate transporter DUF3810 PF12725.7 310 pGCA_001936355_00064 - 200 0.0049 16.3 5.3 1 1 1.9e-06 0.0058 16.0 5.3 19 89 8 80 1 164 0.59 Protein of unknown function (DUF3810) Yip1 PF04893.17 172 pGCA_001936355_00064 - 200 0.24 11.1 5.6 1 1 0.00012 0.37 10.5 5.6 66 120 8 68 2 76 0.77 Yip1 domain Ion_trans PF00520.31 245 pGCA_001936355_00064 - 200 1.4 8.1 14.4 1 1 0.00058 1.7 7.8 14.4 127 183 5 52 1 170 0.81 Ion transport protein DHHC PF01529.20 134 pGCA_001936355_00064 - 200 1.8 8.6 10.9 1 1 0.001 3.1 7.9 10.9 47 112 7 69 3 101 0.70 DHHC palmitoyltransferase Spo7 PF03907.13 221 pGCA_001936355_00064 - 200 2.8 7.4 6.8 1 1 0.0019 5.6 6.4 6.8 33 91 16 69 7 76 0.84 Spo7-like protein CitMHS PF03600.16 300 pGCA_001936355_00066 - 208 0.0033 16.7 0.5 1 1 1.3e-06 0.0039 16.4 0.5 147 214 4 101 1 114 0.81 Citrate transporter Yip1 PF04893.17 172 pGCA_001936355_00066 - 208 0.4 10.4 6.1 1 1 0.00019 0.57 9.9 6.1 66 120 8 68 2 75 0.77 Yip1 domain DUF3810 PF12725.7 310 pGCA_001936355_00066 - 208 0.43 9.9 11.7 1 1 0.00018 0.55 9.5 11.6 19 85 8 74 1 173 0.61 Protein of unknown function (DUF3810) Ion_trans PF00520.31 245 pGCA_001936355_00066 - 208 0.5 9.5 12.3 1 1 0.00026 0.78 8.9 12.2 127 183 5 52 1 85 0.78 Ion transport protein Spo7 PF03907.13 221 pGCA_001936355_00066 - 208 2.2 7.7 7.5 1 1 0.0012 3.7 7.0 7.5 33 93 16 71 12 178 0.72 Spo7-like protein DHHC PF01529.20 134 pGCA_001936355_00066 - 208 3.4 7.8 11.8 1 1 0.0021 6.4 6.9 11.8 47 112 7 69 3 96 0.68 DHHC palmitoyltransferase Phage_lysozyme PF00959.19 109 pGCA_001936355_00067 - 1405 2.1e-10 41.0 2.1 1 2 1.3 4.8e+03 -2.0 0.2 25 64 689 732 680 751 0.61 Phage lysozyme Phage_lysozyme PF00959.19 109 pGCA_001936355_00067 - 1405 2.1e-10 41.0 2.1 2 2 1.7e-13 6e-10 39.6 0.1 3 108 1294 1403 1292 1404 0.86 Phage lysozyme Lipase_3 PF01764.25 142 pGCA_001936355_00067 - 1405 2.8e-07 30.5 0.0 1 1 2.8e-10 1e-06 28.7 0.0 39 105 191 251 158 267 0.71 Lipase (class 3) PGAP1 PF07819.13 231 pGCA_001936355_00067 - 1405 0.00084 19.1 2.0 1 3 8.3e-07 0.003 17.3 0.0 64 133 190 256 145 317 0.76 PGAP1-like protein PGAP1 PF07819.13 231 pGCA_001936355_00067 - 1405 0.00084 19.1 2.0 2 3 1.1 3.8e+03 -2.7 0.7 50 95 541 581 508 582 0.68 PGAP1-like protein PGAP1 PF07819.13 231 pGCA_001936355_00067 - 1405 0.00084 19.1 2.0 3 3 0.31 1.1e+03 -0.9 0.0 164 192 1000 1028 989 1049 0.80 PGAP1-like protein Abhydrolase_6 PF12697.7 220 pGCA_001936355_00067 - 1405 0.096 13.3 0.0 1 1 4.2e-05 0.15 12.6 0.0 62 86 203 230 164 263 0.74 Alpha/beta hydrolase family Thioesterase PF00975.20 231 pGCA_001936355_00067 - 1405 0.2 11.8 0.0 1 1 0.00014 0.51 10.4 0.0 59 94 205 242 184 260 0.71 Thioesterase domain SseC PF04888.12 317 pGCA_001936355_00069 - 1312 0.014 15.1 0.2 1 2 3e-06 0.014 15.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family SseC PF04888.12 317 pGCA_001936355_00069 - 1312 0.014 15.1 0.2 2 2 1.7 7.7e+03 -3.8 3.6 23 55 1260 1290 1243 1291 0.72 Secretion system effector C (SseC) like family ThrE PF06738.12 241 pGCA_001936355_00069 - 1312 0.014 14.8 0.8 1 1 7.8e-06 0.035 13.5 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter APOBEC_C PF05240.14 78 pGCA_001936355_00069 - 1312 0.018 15.0 0.5 1 1 2e-05 0.091 12.7 0.5 26 76 766 819 755 821 0.86 APOBEC-like C-terminal domain Hormone_2 PF00123.20 28 pGCA_001936355_00069 - 1312 0.035 14.0 0.1 1 1 3.5e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone UvrA_DNA-bind PF17755.1 110 pGCA_001936355_00070 - 426 0.0051 17.1 0.3 1 3 0.00018 3.2 8.1 0.0 24 65 36 77 30 90 0.84 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pGCA_001936355_00070 - 426 0.0051 17.1 0.3 2 3 0.00088 16 5.9 0.0 15 33 96 113 92 129 0.75 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pGCA_001936355_00070 - 426 0.0051 17.1 0.3 3 3 0.29 5.3e+03 -2.2 0.0 77 97 316 336 306 338 0.82 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pGCA_001936355_00071 - 428 0.013 15.8 0.2 1 2 0.00038 6.8 7.1 0.1 24 57 32 65 19 83 0.84 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pGCA_001936355_00071 - 428 0.013 15.8 0.2 2 2 0.00081 14 6.0 0.0 15 33 92 109 88 133 0.78 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pGCA_001936355_00073 - 433 0.025 14.9 0.6 1 3 0.0012 11 6.4 0.1 25 57 38 70 31 88 0.85 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pGCA_001936355_00073 - 433 0.025 14.9 0.6 2 3 0.0016 15 6.0 0.0 15 33 97 114 93 138 0.78 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pGCA_001936355_00073 - 433 0.025 14.9 0.6 3 3 1.6 1.4e+04 -3.6 0.0 68 90 317 340 295 343 0.63 UvrA DNA-binding domain DUF3870 PF12986.7 94 pGCA_001936355_00073 - 433 0.11 12.8 0.0 1 1 2.7e-05 0.24 11.6 0.0 11 62 4 58 1 70 0.79 Domain of unknown function (DUF3870) FHA PF00498.26 69 pGCA_001936355_00074 - 299 4.2e-05 23.8 0.0 1 1 1.7e-08 0.0001 22.6 0.0 2 69 32 100 31 100 0.95 FHA domain Yop-YscD_cpl PF16697.5 92 pGCA_001936355_00074 - 299 0.0007 19.9 0.0 1 2 7.7e-07 0.0046 17.3 0.0 11 91 23 109 18 110 0.83 Inner membrane component of T3SS, cytoplasmic domain Yop-YscD_cpl PF16697.5 92 pGCA_001936355_00074 - 299 0.0007 19.9 0.0 2 2 0.23 1.4e+03 -0.3 0.0 31 57 199 225 198 231 0.89 Inner membrane component of T3SS, cytoplasmic domain FDX-ACB PF03147.14 94 pGCA_001936355_00074 - 299 0.05 14.0 3.1 1 2 0.044 2.6e+02 2.1 0.1 18 58 107 147 105 150 0.81 Ferredoxin-fold anticodon binding domain FDX-ACB PF03147.14 94 pGCA_001936355_00074 - 299 0.05 14.0 3.1 2 2 7.4e-05 0.44 11.0 0.9 21 82 151 212 146 218 0.92 Ferredoxin-fold anticodon binding domain ImcF-related_N PF14331.6 259 pGCA_001936355_00075 - 1175 6.2e-41 140.5 0.0 1 1 4.1e-44 1.1e-40 139.7 0.0 5 241 214 447 212 461 0.95 ImcF-related N-terminal domain IcmF_C PF06744.12 203 pGCA_001936355_00075 - 1175 5.9e-40 137.0 0.5 1 1 4.1e-43 1.1e-39 136.2 0.5 2 203 921 1121 920 1121 0.92 Type VI secretion protein IcmF C-terminal IcmF-related PF06761.12 309 pGCA_001936355_00075 - 1175 8.2e-27 94.5 2.1 1 1 4.9e-30 1.3e-26 93.9 2.1 37 309 544 801 512 801 0.87 Intracellular multiplication and human macrophage-killing RsgA_GTPase PF03193.16 167 pGCA_001936355_00075 - 1175 0.0003 20.7 0.0 1 2 8.9e-06 0.023 14.6 0.0 82 160 106 182 71 188 0.73 RsgA GTPase RsgA_GTPase PF03193.16 167 pGCA_001936355_00075 - 1175 0.0003 20.7 0.0 2 2 0.047 1.2e+02 2.5 0.1 44 65 272 293 231 330 0.69 RsgA GTPase MMR_HSR1 PF01926.23 114 pGCA_001936355_00075 - 1175 0.0011 19.0 0.1 1 2 1.7e-06 0.0043 17.1 0.0 2 113 127 282 126 283 0.60 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 pGCA_001936355_00075 - 1175 0.0011 19.0 0.1 2 2 4.1 1e+04 -3.5 0.0 51 79 719 745 693 776 0.63 50S ribosome-binding GTPase Wzy_C PF04932.15 155 pGCA_001936355_00075 - 1175 0.0033 17.1 5.0 1 3 1.4e-05 0.037 13.7 0.4 20 80 16 110 8 230 0.62 O-Antigen ligase Wzy_C PF04932.15 155 pGCA_001936355_00075 - 1175 0.0033 17.1 5.0 2 3 0.078 2e+02 1.5 0.0 41 78 451 488 431 588 0.81 O-Antigen ligase Wzy_C PF04932.15 155 pGCA_001936355_00075 - 1175 0.0033 17.1 5.0 3 3 0.076 2e+02 1.6 0.1 118 145 1058 1085 1053 1086 0.85 O-Antigen ligase AAA_29 PF13555.6 61 pGCA_001936355_00075 - 1175 0.055 13.2 0.1 1 2 0.00017 0.43 10.4 0.0 24 39 126 141 111 144 0.79 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pGCA_001936355_00075 - 1175 0.055 13.2 0.1 2 2 0.72 1.8e+03 -1.3 0.0 22 37 841 856 831 873 0.75 P-loop containing region of AAA domain T6SS_HCP PF05638.12 129 pGCA_001936355_00076 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp DotU PF09850.9 205 pGCA_001936355_00077 - 257 3.6e-35 121.5 0.0 1 1 2.3e-39 4.2e-35 121.4 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_VasE PF05936.12 428 pGCA_001936355_00078 - 465 1.3e-112 376.6 0.0 1 1 8.6e-117 1.5e-112 376.4 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE T6SS-SciN PF12790.7 120 pGCA_001936355_00079 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasJ PF16989.5 255 pGCA_001936355_00080 - 415 1.2e-12 47.9 0.0 1 1 3.9e-16 1.7e-12 47.3 0.0 3 153 176 323 174 408 0.84 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 pGCA_001936355_00080 - 415 0.00014 22.0 0.2 1 2 1.8e-07 0.0008 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 pGCA_001936355_00080 - 415 0.00014 22.0 0.2 2 2 0.31 1.4e+03 -0.6 0.0 47 71 185 209 162 212 0.83 ImpA, N-terminal, type VI secretion system PX PF00787.24 113 pGCA_001936355_00080 - 415 0.074 13.0 14.5 1 3 0.00025 1.1 9.2 2.4 31 111 33 130 20 131 0.67 PX domain PX PF00787.24 113 pGCA_001936355_00080 - 415 0.074 13.0 14.5 2 3 0.00084 3.8 7.5 0.2 16 112 155 275 132 276 0.68 PX domain PX PF00787.24 113 pGCA_001936355_00080 - 415 0.074 13.0 14.5 3 3 0.052 2.3e+02 1.8 0.7 22 97 316 396 296 404 0.70 PX domain TetR_C_24 PF17932.1 114 pGCA_001936355_00080 - 415 0.19 12.0 0.0 1 1 8.8e-05 0.4 11.0 0.0 20 68 71 119 62 132 0.87 Tetracyclin repressor-like, C-terminal domain T6SS_VipA PF05591.12 155 pGCA_001936355_00081 - 161 6.4e-52 175.5 3.9 1 1 8e-56 7.2e-52 175.3 3.9 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 pGCA_001936355_00081 - 161 0.14 10.8 0.0 1 1 1.8e-05 0.16 10.5 0.0 171 227 55 111 40 127 0.90 Chitin synthase VipB PF05943.12 422 pGCA_001936355_00082 - 484 7.4e-170 565.3 0.0 1 1 9.8e-174 8.7e-170 565.1 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 pGCA_001936355_00082 - 484 0.33 11.0 2.6 1 4 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pGCA_001936355_00082 - 484 0.33 11.0 2.6 2 4 1.5 1.4e+04 -3.9 0.0 103 117 130 143 127 147 0.66 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pGCA_001936355_00082 - 484 0.33 11.0 2.6 3 4 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pGCA_001936355_00082 - 484 0.33 11.0 2.6 4 4 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide GPW_gp25 PF04965.14 95 pGCA_001936355_00083 - 130 1.2e-09 37.8 0.0 1 1 2.6e-13 1.5e-09 37.5 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 pGCA_001936355_00083 - 130 0.0076 16.1 0.3 1 1 1.6e-06 0.0097 15.8 0.3 93 159 20 87 6 92 0.89 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 pGCA_001936355_00083 - 130 0.051 13.0 0.1 1 2 2.1e-05 0.12 11.8 0.1 82 121 5 46 1 64 0.83 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 pGCA_001936355_00083 - 130 0.051 13.0 0.1 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) T6SS_TssF PF05947.12 603 pGCA_001936355_00084 - 573 2.3e-110 369.9 0.0 1 1 1.5e-114 2.6e-110 369.8 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF T6SS_TssG PF06996.11 299 pGCA_001936355_00085 - 302 1.9e-47 161.9 0.0 1 1 1.2e-51 2.2e-47 161.8 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG Phage_GPD PF05954.11 304 pGCA_001936355_00086 - 882 1.2e-17 64.2 0.0 1 1 5.4e-21 1.9e-17 63.5 0.0 23 281 74 360 45 376 0.74 Phage late control gene D protein (GPD) DUF2345 PF10106.9 151 pGCA_001936355_00086 - 882 0.011 15.7 1.7 1 1 8.1e-06 0.029 14.2 1.7 28 132 775 874 772 878 0.84 Uncharacterized protein conserved in bacteria (DUF2345) Gp5_C PF06715.12 24 pGCA_001936355_00086 - 882 0.013 15.6 4.6 1 4 5.3e-05 0.19 11.9 0.1 3 24 657 678 655 686 0.67 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pGCA_001936355_00086 - 882 0.013 15.6 4.6 2 4 0.2 7.2e+02 0.7 0.0 13 24 731 742 730 742 0.89 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pGCA_001936355_00086 - 882 0.013 15.6 4.6 3 4 0.61 2.2e+03 -0.8 0.0 1 18 742 760 742 761 0.83 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pGCA_001936355_00086 - 882 0.013 15.6 4.6 4 4 0.22 7.8e+02 0.6 0.1 2 23 752 773 751 774 0.81 Gp5 C-terminal repeat (3 copies) DUF3540 PF12059.8 199 pGCA_001936355_00086 - 882 0.1 12.4 0.8 1 2 0.25 9.1e+02 -0.5 0.0 31 45 534 548 532 555 0.80 Protein of unknown function (DUF3540) DUF3540 PF12059.8 199 pGCA_001936355_00086 - 882 0.1 12.4 0.8 2 2 0.00012 0.45 10.3 0.2 60 128 783 850 777 861 0.85 Protein of unknown function (DUF3540) TCL1_MTCP1 PF01840.17 116 pGCA_001936355_00086 - 882 0.1 12.2 0.0 1 2 0.053 1.9e+02 1.7 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 pGCA_001936355_00086 - 882 0.1 12.2 0.0 2 2 0.00085 3 7.5 0.0 19 52 461 494 452 517 0.80 TCL1/MTCP1 family Ank_3 PF13606.6 31 pGCA_001936355_00087 - 312 2.8e-10 39.5 0.1 1 4 0.017 63 4.6 0.0 8 26 73 93 71 97 0.83 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001936355_00087 - 312 2.8e-10 39.5 0.1 2 4 0.025 88 4.2 0.0 10 29 142 160 132 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001936355_00087 - 312 2.8e-10 39.5 0.1 3 4 2.5e-07 0.00091 19.5 0.0 2 30 168 195 167 196 0.95 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001936355_00087 - 312 2.8e-10 39.5 0.1 4 4 0.01 37 5.3 0.0 4 30 208 234 205 235 0.86 Ankyrin repeat Ank_2 PF12796.7 83 pGCA_001936355_00087 - 312 3.8e-09 37.0 0.0 1 2 0.53 1.9e+03 -0.5 0.0 4 18 74 92 70 121 0.56 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pGCA_001936355_00087 - 312 3.8e-09 37.0 0.0 2 2 7.2e-12 2.6e-08 34.3 0.0 5 80 142 234 138 237 0.79 Ankyrin repeats (3 copies) Ank_4 PF13637.6 55 pGCA_001936355_00087 - 312 1.9e-05 25.1 0.0 1 3 1.3 4.7e+03 -1.6 0.0 10 21 76 89 67 99 0.55 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001936355_00087 - 312 1.9e-05 25.1 0.0 2 3 3e-07 0.0011 19.5 0.0 13 55 146 188 134 188 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001936355_00087 - 312 1.9e-05 25.1 0.0 3 3 0.11 3.9e+02 1.8 0.0 4 28 209 234 207 243 0.79 Ankyrin repeats (many copies) Ank PF00023.30 32 pGCA_001936355_00087 - 312 7.3e-05 23.0 0.0 1 3 0.023 82 3.9 0.0 10 25 142 158 132 165 0.82 Ankyrin repeat Ank PF00023.30 32 pGCA_001936355_00087 - 312 7.3e-05 23.0 0.0 2 3 0.00068 2.5 8.7 0.0 2 31 168 198 167 199 0.87 Ankyrin repeat Ank PF00023.30 32 pGCA_001936355_00087 - 312 7.3e-05 23.0 0.0 3 3 0.0054 19 5.9 0.0 15 28 220 234 206 237 0.70 Ankyrin repeat Ank_5 PF13857.6 56 pGCA_001936355_00087 - 312 0.0034 17.6 0.3 1 5 2.5 8.8e+03 -2.8 0.0 42 52 50 60 48 61 0.76 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001936355_00087 - 312 0.0034 17.6 0.3 2 5 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001936355_00087 - 312 0.0034 17.6 0.3 3 5 0.2 7.2e+02 0.7 0.0 23 41 141 159 139 166 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001936355_00087 - 312 0.0034 17.6 0.3 4 5 3.5e-05 0.13 12.7 0.0 9 48 162 200 153 202 0.83 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001936355_00087 - 312 0.0034 17.6 0.3 5 5 2.5 9.1e+03 -2.8 0.0 34 53 225 242 221 243 0.56 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 pGCA_001936355_00088 - 592 6.6e-08 32.8 0.0 1 3 0.38 6.9e+03 -2.6 0.1 20 27 371 378 352 399 0.59 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pGCA_001936355_00088 - 592 6.6e-08 32.8 0.0 2 3 3.7e-12 6.6e-08 32.8 0.0 13 84 410 483 391 485 0.81 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pGCA_001936355_00088 - 592 6.6e-08 32.8 0.0 3 3 1 1.8e+04 -4.0 0.7 46 58 492 505 490 517 0.52 Restriction endonuclease fold toxin 7 Ank_2 PF12796.7 83 pGCA_001936355_00089 - 304 1.3e-11 44.9 0.5 1 2 7e-08 0.00025 21.6 0.1 32 82 140 197 70 198 0.79 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pGCA_001936355_00089 - 304 1.3e-11 44.9 0.5 2 2 3e-10 1.1e-06 29.1 0.1 5 80 142 235 137 238 0.79 Ankyrin repeats (3 copies) Ank_3 PF13606.6 31 pGCA_001936355_00089 - 304 4.9e-10 38.8 0.4 1 4 0.015 53 4.9 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001936355_00089 - 304 4.9e-10 38.8 0.4 2 4 0.024 85 4.2 0.0 10 29 142 160 132 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001936355_00089 - 304 4.9e-10 38.8 0.4 3 4 2.5e-06 0.0091 16.4 0.0 2 30 168 195 167 196 0.94 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001936355_00089 - 304 4.9e-10 38.8 0.4 4 4 0.0018 6.3 7.7 0.0 1 30 206 235 206 236 0.92 Ankyrin repeat Ank_4 PF13637.6 55 pGCA_001936355_00089 - 304 0.0015 19.1 0.1 1 4 0.81 2.9e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001936355_00089 - 304 0.0015 19.1 0.1 2 4 0.00017 0.6 10.8 0.0 13 55 146 188 134 188 0.78 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001936355_00089 - 304 0.0015 19.1 0.1 3 4 8.5e-05 0.31 11.7 0.0 2 55 169 228 168 228 0.84 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001936355_00089 - 304 0.0015 19.1 0.1 4 4 0.024 84 3.9 0.0 3 28 209 235 207 239 0.90 Ankyrin repeats (many copies) Ank PF00023.30 32 pGCA_001936355_00089 - 304 0.0038 17.6 0.0 1 3 0.024 85 3.9 0.0 10 25 142 158 132 166 0.83 Ankyrin repeat Ank PF00023.30 32 pGCA_001936355_00089 - 304 0.0038 17.6 0.0 2 3 0.03 1.1e+02 3.5 0.0 3 31 169 198 167 199 0.82 Ankyrin repeat Ank PF00023.30 32 pGCA_001936355_00089 - 304 0.0038 17.6 0.0 3 3 0.0051 18 6.0 0.0 15 28 221 235 206 238 0.69 Ankyrin repeat Ank_5 PF13857.6 56 pGCA_001936355_00089 - 304 0.023 15.0 0.1 1 3 0.59 2.1e+03 -0.8 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001936355_00089 - 304 0.023 15.0 0.1 2 3 0.00043 1.5 9.2 0.0 23 54 141 173 139 175 0.92 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001936355_00089 - 304 0.023 15.0 0.1 3 3 0.13 4.6e+02 1.3 0.0 15 29 179 193 173 210 0.76 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 pGCA_001936355_00090 - 572 1.4e-07 31.7 4.9 1 3 0.36 3.2e+03 -1.5 1.2 37 64 337 365 334 372 0.73 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pGCA_001936355_00090 - 572 1.4e-07 31.7 4.9 2 3 0.51 4.6e+03 -2.0 0.1 13 29 378 394 366 399 0.52 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pGCA_001936355_00090 - 572 1.4e-07 31.7 4.9 3 3 1.8e-11 1.7e-07 31.5 0.0 13 84 421 494 402 496 0.81 Restriction endonuclease fold toxin 7 DUF2239 PF09998.9 184 pGCA_001936355_00090 - 572 0.57 9.9 6.5 1 2 0.00018 1.6 8.5 0.6 23 71 46 92 38 103 0.74 Uncharacterized protein conserved in bacteria (DUF2239) DUF2239 PF09998.9 184 pGCA_001936355_00090 - 572 0.57 9.9 6.5 2 2 0.0045 40 3.9 0.8 4 83 259 373 257 382 0.72 Uncharacterized protein conserved in bacteria (DUF2239) Ank_2 PF12796.7 83 pGCA_001936355_00091 - 315 5.5e-13 49.3 0.5 1 2 2.7e-08 8.2e-05 23.1 0.1 27 82 132 199 71 200 0.70 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pGCA_001936355_00091 - 315 5.5e-13 49.3 0.5 2 2 4.5e-11 1.3e-07 32.0 0.0 7 80 145 237 136 240 0.79 Ankyrin repeats (3 copies) Ank_3 PF13606.6 31 pGCA_001936355_00091 - 315 5.8e-11 41.6 0.3 1 4 0.021 63 4.6 0.0 8 26 73 93 71 97 0.83 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001936355_00091 - 315 5.8e-11 41.6 0.3 2 4 0.05 1.5e+02 3.5 0.0 12 29 145 161 135 163 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001936355_00091 - 315 5.8e-11 41.6 0.3 3 4 1.8e-07 0.00054 20.2 0.0 1 30 169 197 169 198 0.95 Ankyrin repeat Ank_3 PF13606.6 31 pGCA_001936355_00091 - 315 5.8e-11 41.6 0.3 4 4 0.0022 6.6 7.7 0.0 1 30 208 237 208 238 0.92 Ankyrin repeat Ank PF00023.30 32 pGCA_001936355_00091 - 315 1.9e-05 24.9 0.0 1 3 0.015 44 4.8 0.0 11 26 144 160 132 166 0.69 Ankyrin repeat Ank PF00023.30 32 pGCA_001936355_00091 - 315 1.9e-05 24.9 0.0 2 3 0.00038 1.1 9.8 0.0 1 31 169 200 169 201 0.87 Ankyrin repeat Ank PF00023.30 32 pGCA_001936355_00091 - 315 1.9e-05 24.9 0.0 3 3 0.0058 17 6.0 0.0 15 28 223 237 208 240 0.69 Ankyrin repeat Ank_4 PF13637.6 55 pGCA_001936355_00091 - 315 6.7e-05 23.4 0.2 1 3 1.4 4.3e+03 -1.5 0.0 10 21 76 89 67 102 0.57 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001936355_00091 - 315 6.7e-05 23.4 0.2 2 3 6e-06 0.018 15.6 0.1 14 55 148 190 132 190 0.79 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pGCA_001936355_00091 - 315 6.7e-05 23.4 0.2 3 3 0.027 80 4.0 0.0 3 28 211 237 193 239 0.86 Ankyrin repeats (many copies) FAM25 PF15825.5 65 pGCA_001936355_00091 - 315 0.0037 17.6 1.6 1 2 0.0008 2.4 8.6 0.2 13 35 108 128 104 130 0.91 FAM25 family FAM25 PF15825.5 65 pGCA_001936355_00091 - 315 0.0037 17.6 1.6 2 2 0.0022 6.4 7.2 0.1 19 35 299 315 291 315 0.82 FAM25 family Ank_5 PF13857.6 56 pGCA_001936355_00091 - 315 0.028 14.7 0.1 1 4 3 8.9e+03 -2.8 0.0 42 52 50 60 48 61 0.76 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001936355_00091 - 315 0.028 14.7 0.1 2 4 0.67 2e+03 -0.7 0.0 26 42 79 96 73 99 0.80 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001936355_00091 - 315 0.028 14.7 0.1 3 4 0.14 4.3e+02 1.4 0.0 26 53 145 174 143 176 0.70 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pGCA_001936355_00091 - 315 0.028 14.7 0.1 4 4 0.00028 0.82 10.1 0.0 2 46 155 200 154 211 0.77 Ankyrin repeats (many copies) TNT PF14021.6 88 pGCA_001936355_00094 - 364 1.5e-15 57.5 0.0 1 2 6.2e-13 1.1e-08 35.5 0.0 1 53 238 298 238 304 0.87 Tuberculosis necrotizing toxin TNT PF14021.6 88 pGCA_001936355_00094 - 364 1.5e-15 57.5 0.0 2 2 5.1e-08 0.00092 19.7 0.0 53 88 329 363 313 363 0.91 Tuberculosis necrotizing toxin LPD7 PF18821.1 94 pGCA_001936355_00095 - 184 0.032 14.3 0.5 1 2 0.0043 39 4.5 0.1 30 80 55 110 19 121 0.62 Large polyvalent protein-associated domain 7 LPD7 PF18821.1 94 pGCA_001936355_00095 - 184 0.032 14.3 0.5 2 2 0.00035 3.1 8.0 0.1 35 65 124 157 116 161 0.77 Large polyvalent protein-associated domain 7 Imm59 PF15597.6 100 pGCA_001936355_00095 - 184 1.1 9.8 8.9 1 3 0.00016 1.5 9.4 2.6 28 74 25 73 21 94 0.85 Immunity protein 59 Imm59 PF15597.6 100 pGCA_001936355_00095 - 184 1.1 9.8 8.9 2 3 0.033 3e+02 2.0 1.7 12 47 70 107 64 145 0.53 Immunity protein 59 Imm59 PF15597.6 100 pGCA_001936355_00095 - 184 1.1 9.8 8.9 3 3 0.023 2.1e+02 2.5 0.7 41 62 124 149 90 183 0.64 Immunity protein 59 AHH PF14412.6 114 pGCA_001936355_00096 - 258 1e-15 57.8 1.5 1 1 1.1e-19 2e-15 56.9 1.5 8 111 153 239 148 243 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH Ntox24 PF15529.6 97 pGCA_001936355_00099 - 318 0.003 17.8 1.3 1 2 0.41 7.4e+03 -2.7 0.0 26 45 180 201 159 204 0.52 Bacterial toxin 24 Ntox24 PF15529.6 97 pGCA_001936355_00099 - 318 0.003 17.8 1.3 2 2 2.7e-07 0.0048 17.2 0.3 5 93 228 301 223 305 0.76 Bacterial toxin 24 CobN-Mg_chel PF02514.16 1089 pGCA_001936355_00100 - 128 0.16 9.7 0.0 1 1 1e-05 0.19 9.5 0.0 299 369 36 100 24 109 0.71 CobN/Magnesium Chelatase Imm59 PF15597.6 100 pGCA_001936355_00101 - 185 0.054 14.0 8.6 1 2 6.5e-06 0.12 12.9 1.7 28 85 25 84 18 93 0.83 Immunity protein 59 Imm59 PF15597.6 100 pGCA_001936355_00101 - 185 0.054 14.0 8.6 2 2 0.0019 34 5.0 1.5 6 86 87 176 83 184 0.65 Immunity protein 59 AHH PF14412.6 114 pGCA_001936355_00102 - 258 5.7e-17 61.8 2.0 1 1 1.3e-20 1.1e-16 60.9 2.0 8 111 153 239 148 243 0.88 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH RRF PF01765.19 162 pGCA_001936355_00102 - 258 0.25 11.3 7.2 1 2 1.5e-05 0.13 12.2 1.5 122 156 161 196 125 199 0.78 Ribosome recycling factor RRF PF01765.19 162 pGCA_001936355_00102 - 258 0.25 11.3 7.2 2 2 0.018 1.6e+02 2.2 0.4 83 106 220 243 207 256 0.59 Ribosome recycling factor DUF4299 PF14132.6 301 pGCA_001936355_00104 - 116 1.4e-08 34.5 0.1 1 1 1.8e-12 1.6e-08 34.3 0.1 189 300 12 110 5 111 0.87 Domain of unknown function (DUF4299) XPG_I PF00867.18 94 pGCA_001936355_00104 - 116 0.12 12.7 0.0 1 1 1.7e-05 0.15 12.4 0.0 27 78 30 87 16 106 0.73 XPG I-region Phage_GPD PF05954.11 304 pGCA_001936355_00106 - 838 1.1e-17 64.3 0.0 1 1 1.9e-21 1.7e-17 63.7 0.0 23 281 74 360 45 376 0.74 Phage late control gene D protein (GPD) TCL1_MTCP1 PF01840.17 116 pGCA_001936355_00106 - 838 0.081 12.6 0.0 1 2 0.02 1.8e+02 1.8 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 pGCA_001936355_00106 - 838 0.081 12.6 0.0 2 2 0.00032 2.9 7.6 0.0 19 52 461 494 452 517 0.80 TCL1/MTCP1 family BaxI_1 PF12811.7 232 pGCA_001936355_00108 - 203 0.28 10.7 13.0 1 1 4.8e-05 0.43 10.1 12.5 98 179 71 166 47 180 0.71 Bax inhibitor 1 like CrgA PF06781.12 88 pGCA_001936355_00108 - 203 0.43 10.7 6.3 1 2 5.6e-05 0.5 10.5 4.6 35 84 77 130 70 132 0.74 Cell division protein CrgA CrgA PF06781.12 88 pGCA_001936355_00108 - 203 0.43 10.7 6.3 2 2 0.52 4.6e+03 -2.3 0.0 31 45 158 172 143 184 0.54 Cell division protein CrgA Peripla_BP_2 PF01497.18 238 pGCA_001936355_00109 - 118 0.017 14.7 0.0 1 1 2.4e-06 0.021 14.4 0.0 39 69 64 98 38 108 0.76 Periplasmic binding protein DUF2345 PF10106.9 151 pGCA_001936355_00109 - 118 0.029 14.3 0.4 1 2 3e-05 0.27 11.1 0.1 86 144 18 74 15 81 0.81 Uncharacterized protein conserved in bacteria (DUF2345) DUF2345 PF10106.9 151 pGCA_001936355_00109 - 118 0.029 14.3 0.4 2 2 0.012 1e+02 2.7 0.1 91 132 70 110 67 114 0.63 Uncharacterized protein conserved in bacteria (DUF2345) DZR PF12773.7 49 pGCA_001936355_00113 - 114 0.039 14.0 0.3 1 1 9.1e-06 0.054 13.5 0.3 13 37 5 38 2 43 0.91 Double zinc ribbon DiS_P_DiS PF06750.13 84 pGCA_001936355_00113 - 114 0.04 14.1 0.4 1 1 1.3e-05 0.077 13.1 0.4 29 72 6 49 2 59 0.83 Bacterial Peptidase A24 N-terminal domain zinc_ribbon_4 PF13717.6 36 pGCA_001936355_00113 - 114 0.6 10.1 4.6 1 2 0.054 3.2e+02 1.3 0.4 4 11 6 13 6 15 0.71 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_001936355_00113 - 114 0.6 10.1 4.6 2 2 0.00011 0.64 10.0 0.4 3 14 30 41 29 45 0.88 zinc-ribbon domain Rapsyn_N PF10579.9 80 pGCA_001936355_00114 - 358 0.12 12.5 1.2 1 2 0.035 6.2e+02 0.6 0.2 8 50 133 175 128 195 0.79 Rapsyn N-terminal myristoylation and linker region Rapsyn_N PF10579.9 80 pGCA_001936355_00114 - 358 0.12 12.5 1.2 2 2 6.6e-05 1.2 9.3 0.0 7 51 219 264 215 271 0.85 Rapsyn N-terminal myristoylation and linker region SprT-like PF10263.9 113 pGCA_001936355_00116 - 424 0.056 13.3 0.1 1 1 1.5e-05 0.13 12.1 0.1 58 93 316 353 294 360 0.81 SprT-like family Peptidase_M78 PF06114.13 123 pGCA_001936355_00116 - 424 0.077 12.9 0.1 1 1 2e-05 0.18 11.8 0.1 6 63 288 347 285 365 0.76 IrrE N-terminal-like domain Phage_integrase PF00589.22 172 pGCA_001936355_00119 - 312 5.1e-24 85.0 0.5 1 1 2.8e-27 8.3e-24 84.3 0.5 2 170 130 301 129 303 0.91 Phage integrase family Phage_int_SAM_1 PF02899.17 84 pGCA_001936355_00119 - 312 2.3e-05 24.6 3.9 1 3 1.4e-07 0.00043 20.5 1.9 1 79 16 99 16 99 0.88 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pGCA_001936355_00119 - 312 2.3e-05 24.6 3.9 2 3 0.0015 4.4 7.7 0.0 13 35 80 102 76 109 0.89 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pGCA_001936355_00119 - 312 2.3e-05 24.6 3.9 3 3 3.1 9.3e+03 -3.0 0.0 36 54 123 141 114 151 0.54 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 pGCA_001936355_00119 - 312 0.00011 22.4 4.6 1 3 3.8e-08 0.00011 22.4 4.6 4 80 14 97 11 100 0.86 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pGCA_001936355_00119 - 312 0.00011 22.4 4.6 2 3 0.91 2.7e+03 -1.3 0.0 19 49 151 189 136 192 0.44 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pGCA_001936355_00119 - 312 0.00011 22.4 4.6 3 3 1.8 5.4e+03 -2.2 0.0 5 32 218 238 212 255 0.55 Phage integrase SAM-like domain Phyto-Amp PF15438.6 195 pGCA_001936355_00119 - 312 0.0094 15.8 0.3 1 1 5.8e-06 0.017 14.9 0.3 23 87 244 312 237 312 0.80 Antigenic membrane protein of phytoplasma YbjN PF10722.9 127 pGCA_001936355_00119 - 312 0.011 15.8 0.3 1 2 0.00017 0.51 10.4 0.1 38 77 96 135 93 137 0.92 Putative bacterial sensory transduction regulator YbjN PF10722.9 127 pGCA_001936355_00119 - 312 0.011 15.8 0.3 2 2 0.04 1.2e+02 2.7 0.0 6 48 173 215 171 228 0.84 Putative bacterial sensory transduction regulator Phage_int_SAM_3 PF14659.6 58 pGCA_001936355_00119 - 312 0.028 14.7 3.2 1 1 3.6e-05 0.11 12.8 3.2 1 57 7 71 7 72 0.95 Phage integrase, N-terminal SAM-like domain FlaC_arch PF05377.11 55 pGCA_001936355_00120 - 76 0.0083 16.5 2.3 1 2 0.52 9.3e+03 -2.9 0.1 24 25 9 10 3 16 0.53 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pGCA_001936355_00120 - 76 0.0083 16.5 2.3 2 2 4.6e-07 0.0083 16.5 2.3 6 38 26 58 25 66 0.93 Flagella accessory protein C (FlaC) WGR PF05406.15 80 pGCA_001936355_00121 - 75 2.4e-07 30.7 0.6 1 1 3.1e-11 2.7e-07 30.5 0.6 3 73 4 74 2 75 0.87 WGR domain Cadherin_pro PF08758.11 90 pGCA_001936355_00121 - 75 0.017 15.3 0.0 1 1 2.3e-06 0.021 15.0 0.0 15 45 26 56 12 62 0.81 Cadherin prodomain like YafQ_toxin PF15738.5 88 pGCA_001936355_00125 - 106 1.6e-26 92.4 3.7 1 1 4.7e-30 2.1e-26 92.0 3.7 1 87 20 106 20 106 0.95 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 pGCA_001936355_00125 - 106 1.9e-06 28.4 0.6 1 1 4.9e-10 2.2e-06 28.2 0.6 6 89 23 105 18 106 0.80 ParE toxin of type II toxin-antitoxin system, parDE Ribosomal_S2 PF00318.20 215 pGCA_001936355_00125 - 106 0.0042 16.3 0.9 1 1 1.2e-06 0.0053 16.0 0.9 98 164 27 94 21 99 0.83 Ribosomal protein S2 ParE-like_toxin PF15781.5 87 pGCA_001936355_00125 - 106 0.017 15.1 1.6 1 1 7.8e-06 0.035 14.1 1.6 5 82 26 105 22 106 0.79 ParE-like toxin of type II bacterial toxin-antitoxin system CCDC-167 PF15188.6 84 pGCA_001936355_00130 - 137 0.0044 17.3 0.4 1 1 8.6e-07 0.0077 16.6 0.4 37 79 77 119 21 120 0.77 Coiled-coil domain-containing protein 167 DUF3461 PF11944.8 125 pGCA_001936355_00130 - 137 0.018 15.1 3.2 1 1 5.4e-06 0.049 13.8 3.2 23 124 7 100 2 101 0.82 Protein of unknown function (DUF3461) Sigma_reg_N PF13800.6 90 pGCA_001936355_00131 - 37 0.13 12.6 0.3 1 1 7.1e-06 0.13 12.6 0.3 15 44 5 34 4 37 0.89 Sigma factor regulator N-terminal DUF5601 PF18151.1 65 pGCA_001936355_00132 - 118 0.038 14.3 0.2 1 1 7e-06 0.063 13.6 0.2 14 55 5 47 1 48 0.88 Domain of unknown function (DUF5601) DUF1640 PF07798.11 175 pGCA_001936355_00132 - 118 0.58 10.2 7.1 1 2 1.4e-05 0.12 12.4 2.4 52 100 26 77 9 86 0.83 Protein of unknown function (DUF1640) DUF1640 PF07798.11 175 pGCA_001936355_00132 - 118 0.58 10.2 7.1 2 2 0.068 6.1e+02 0.3 0.3 148 169 82 103 74 110 0.65 Protein of unknown function (DUF1640) HTH_3 PF01381.22 55 pGCA_001936355_00134 - 44 8.4e-07 29.0 0.0 1 1 1e-09 9.1e-07 28.9 0.0 1 33 9 41 9 44 0.95 Helix-turn-helix HTH_26 PF13443.6 63 pGCA_001936355_00134 - 44 0.00022 21.6 0.0 1 1 2.7e-07 0.00024 21.4 0.0 2 34 9 41 8 44 0.94 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 48 pGCA_001936355_00134 - 44 0.0007 19.1 0.2 1 1 1e-06 0.00093 18.7 0.2 7 35 7 35 4 36 0.93 Winged helix-turn-helix DNA-binding HTH_19 PF12844.7 65 pGCA_001936355_00134 - 44 0.0012 18.8 0.0 1 1 1.4e-06 0.0013 18.8 0.0 4 37 9 42 7 44 0.91 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 pGCA_001936355_00134 - 44 0.002 18.0 0.1 1 1 2.6e-06 0.0023 17.7 0.1 1 32 9 41 9 43 0.84 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 pGCA_001936355_00134 - 44 0.002 17.9 0.0 1 1 3.8e-06 0.0034 17.1 0.0 6 37 4 37 2 40 0.89 Homeodomain-like domain ENT PF03735.14 70 pGCA_001936355_00134 - 44 0.0035 17.4 0.3 1 1 5.7e-06 0.0052 16.8 0.3 25 46 1 22 1 41 0.89 ENT domain HTH_31 PF13560.6 64 pGCA_001936355_00134 - 44 0.0089 16.4 0.0 1 1 1.2e-05 0.011 16.1 0.0 12 38 15 41 9 43 0.88 Helix-turn-helix domain CENP-B_N PF04218.13 53 pGCA_001936355_00134 - 44 0.009 15.6 0.2 1 1 1.4e-05 0.013 15.1 0.2 10 44 3 39 2 42 0.83 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 75 pGCA_001936355_00134 - 44 0.0098 16.2 0.0 1 1 1.3e-05 0.012 15.9 0.0 9 43 2 37 1 40 0.92 Transposase HTH_Tnp_ISL3 PF13542.6 52 pGCA_001936355_00134 - 44 0.013 14.9 0.0 1 1 1.9e-05 0.017 14.5 0.0 24 48 13 38 5 39 0.82 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 55 pGCA_001936355_00134 - 44 0.019 14.9 0.1 1 1 2.5e-05 0.022 14.7 0.1 4 33 7 35 4 36 0.80 HTH domain HTH_38 PF13936.6 44 pGCA_001936355_00134 - 44 0.02 14.7 0.0 1 1 2.7e-05 0.024 14.4 0.0 20 38 17 35 1 36 0.74 Helix-turn-helix domain HTH_AsnC-type PF13404.6 42 pGCA_001936355_00134 - 44 0.029 14.2 0.0 1 1 3.5e-05 0.031 14.1 0.0 8 34 8 34 6 36 0.81 AsnC-type helix-turn-helix domain Phage_CI_repr PF07022.13 65 pGCA_001936355_00134 - 44 0.03 14.4 0.0 1 1 3.7e-05 0.033 14.3 0.0 3 33 9 38 7 41 0.84 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4 PF04545.16 50 pGCA_001936355_00134 - 44 0.034 13.7 0.0 1 1 4.5e-05 0.041 13.4 0.0 13 37 9 34 1 37 0.76 Sigma-70, region 4 HTH_17 PF12728.7 51 pGCA_001936355_00134 - 44 0.081 13.1 0.1 1 2 0.018 16 5.8 0.0 4 16 9 21 9 26 0.87 Helix-turn-helix domain HTH_17 PF12728.7 51 pGCA_001936355_00134 - 44 0.081 13.1 0.1 2 2 0.0085 7.6 6.8 0.0 6 26 22 42 19 44 0.78 Helix-turn-helix domain MerR PF00376.23 38 pGCA_001936355_00134 - 44 0.085 12.7 0.0 1 2 0.025 22 4.9 0.0 2 12 9 19 9 21 0.92 MerR family regulatory protein MerR PF00376.23 38 pGCA_001936355_00134 - 44 0.085 12.7 0.0 2 2 0.01 9.3 6.1 0.0 4 17 22 35 21 41 0.84 MerR family regulatory protein Phage_terminase PF10668.9 60 pGCA_001936355_00134 - 44 0.15 12.1 0.2 1 1 0.00036 0.33 11.0 0.2 16 42 9 37 2 41 0.76 Phage terminase small subunit HTH_28 PF13518.6 52 pGCA_001936355_00134 - 44 0.2 11.8 0.0 1 1 0.0003 0.27 11.4 0.0 2 32 5 37 4 39 0.83 Helix-turn-helix domain GTP_EFTU PF00009.27 194 pGCA_002101355_00001 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pGCA_002101355_00001 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pGCA_002101355_00001 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pGCA_002101355_00001 - 639 1.2e-16 60.5 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pGCA_002101355_00001 - 639 3e-12 46.4 0.1 1 1 3.5e-15 6.9e-12 45.3 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pGCA_002101355_00001 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pGCA_002101355_00001 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pGCA_002101355_00001 - 639 0.019 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pGCA_002101355_00001 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pGCA_002101355_00001 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family APH PF01636.23 240 pGCA_002101355_00002 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pGCA_002101355_00002 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pGCA_002101355_00002 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pGCA_002101355_00002 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family W2 PF02020.18 79 pGCA_002101355_00003 - 266 0.02 15.0 0.1 1 2 0.23 4.1e+03 -2.0 0.0 43 65 155 177 150 179 0.61 eIF4-gamma/eIF5/eIF2-epsilon W2 PF02020.18 79 pGCA_002101355_00003 - 266 0.02 15.0 0.1 2 2 3.4e-06 0.061 13.5 0.0 38 77 180 240 176 242 0.86 eIF4-gamma/eIF5/eIF2-epsilon Lip_prot_lig_C PF10437.9 85 pGCA_002101355_00004 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pGCA_002101355_00004 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pGCA_002101355_00004 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pGCA_002101355_00004 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain LysE PF01810.18 193 pGCA_002101355_00005 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 pGCA_002101355_00005 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pGCA_002101355_00005 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 pGCA_002101355_00005 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 pGCA_002101355_00005 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 pGCA_002101355_00005 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 pGCA_002101355_00005 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 pGCA_002101355_00005 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 pGCA_002101355_00005 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pGCA_002101355_00005 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pGCA_002101355_00005 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 pGCA_002101355_00005 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 pGCA_002101355_00006 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pGCA_002101355_00006 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pGCA_002101355_00006 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pGCA_002101355_00006 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pGCA_002101355_00006 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pGCA_002101355_00006 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pGCA_002101355_00007 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pGCA_002101355_00007 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pGCA_002101355_00008 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pGCA_002101355_00008 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pGCA_002101355_00008 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_002101355_00008 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pGCA_002101355_00008 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pGCA_002101355_00008 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pGCA_002101355_00009 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pGCA_002101355_00010 - 1931 3e-16 59.1 2.6 1 3 1.1e-19 4.1e-16 58.6 0.1 56 245 1016 1272 934 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_002101355_00010 - 1931 3e-16 59.1 2.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_002101355_00010 - 1931 3e-16 59.1 2.6 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1875 1923 1845 1924 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pGCA_002101355_00010 - 1931 4.9e-08 33.2 8.3 1 2 1.4e-11 4.9e-08 33.2 8.3 2 148 999 1211 998 1242 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_002101355_00010 - 1931 4.9e-08 33.2 8.3 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1798 1909 1724 1931 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pGCA_002101355_00010 - 1931 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1076 1104 1028 1108 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pGCA_002101355_00010 - 1931 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pGCA_002101355_00010 - 1931 8.9e-06 25.6 1.8 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1003 1108 1002 1204 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pGCA_002101355_00010 - 1931 8.9e-06 25.6 1.8 2 2 0.12 4.2e+02 0.6 0.0 119 150 1882 1915 1827 1930 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 pGCA_002101355_00010 - 1931 3.7e-05 24.2 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 371 471 369 474 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pGCA_002101355_00010 - 1931 3.7e-05 24.2 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 pGCA_002101355_00011 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 pGCA_002101355_00011 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 pGCA_002101355_00011 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 pGCA_002101355_00011 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) Acetyltransf_7 PF13508.7 76 pGCA_002101355_00012 - 234 0.0002 21.7 0.0 1 1 6.3e-08 0.00038 20.8 0.0 29 75 79 143 36 144 0.68 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pGCA_002101355_00012 - 234 0.0029 17.8 0.0 1 1 1.2e-06 0.0072 16.5 0.0 64 92 81 109 56 142 0.78 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 pGCA_002101355_00012 - 234 0.0083 16.2 0.3 1 1 2.6e-06 0.015 15.3 0.3 24 67 171 214 154 218 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Relaxase PF03432.14 242 pGCA_002101355_00013 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_002101355_00013 - 462 4.7e-10 39.5 7.4 2 2 0.0071 1.3e+02 2.0 5.4 119 183 326 395 318 430 0.69 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pGCA_002101355_00014 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_002101355_00014 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_002101355_00014 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pGCA_002101355_00014 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pGCA_002101355_00014 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_002101355_00014 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_002101355_00014 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pGCA_002101355_00014 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pGCA_002101355_00014 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pGCA_002101355_00014 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pGCA_002101355_00014 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 pGCA_002101355_00015 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 pGCA_002101355_00015 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 pGCA_002101355_00015 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 pGCA_002101355_00015 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 pGCA_002101355_00015 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 pGCA_002101355_00017 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pGCA_002101355_00017 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pGCA_002101355_00018 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pGCA_002101355_00018 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 pGCA_002101355_00018 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pGCA_002101355_00018 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_002101355_00018 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pGCA_002101355_00019 - 92 0.0072 16.3 0.0 1 1 7.4e-07 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) Sdh_cyt PF01127.22 121 pGCA_002101355_00020 - 91 0.0019 18.2 0.5 1 1 3.8e-07 0.0023 18.0 0.5 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pGCA_002101355_00020 - 91 0.14 12.5 3.0 1 1 3.1e-05 0.19 12.1 3.0 6 55 12 74 10 90 0.67 2TM domain DUF2633 PF11119.8 57 pGCA_002101355_00020 - 91 1.1 9.2 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pGCA_002101355_00022 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system AAA_25 PF13481.6 194 pGCA_002101355_00023 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pGCA_002101355_00023 - 597 0.00073 19.0 0.0 1 2 1.6e-06 0.0042 16.5 0.0 16 117 30 136 23 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_002101355_00023 - 597 0.00073 19.0 0.0 2 2 0.014 37 3.5 0.0 123 183 114 176 98 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_002101355_00023 - 597 0.0032 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_002101355_00023 - 597 0.0032 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pGCA_002101355_00023 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_002101355_00023 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pGCA_002101355_00023 - 597 0.028 13.8 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pGCA_002101355_00023 - 597 0.028 13.8 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pGCA_002101355_00023 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pGCA_002101355_00023 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pGCA_002101355_00023 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 pGCA_002101355_00024 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pGCA_002101355_00024 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_002101355_00024 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_002101355_00024 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pGCA_002101355_00024 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_002101355_00024 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_002101355_00024 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pGCA_002101355_00024 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_002101355_00024 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_002101355_00024 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pGCA_002101355_00025 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pGCA_002101355_00025 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pGCA_002101355_00025 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pGCA_002101355_00027 - 73 3.4e-11 43.2 3.7 1 1 4.5e-15 4e-11 43.0 3.7 33 99 5 71 2 71 0.95 TrbC/VIRB2 family DUF2062 PF09835.9 148 pGCA_002101355_00027 - 73 0.12 12.2 4.4 1 1 2e-05 0.18 11.6 4.4 78 135 23 73 11 73 0.64 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pGCA_002101355_00028 - 922 1.7e-50 172.0 0.4 1 1 6.5e-54 3.9e-50 170.8 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pGCA_002101355_00028 - 922 7.2e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pGCA_002101355_00028 - 922 0.048 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pGCA_002101355_00029 - 185 6.6e-30 103.5 0.0 1 1 1.7e-33 1e-29 102.9 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pGCA_002101355_00029 - 185 0.0051 16.9 0.0 1 1 1.8e-06 0.011 15.9 0.0 23 90 27 94 23 96 0.94 Uncharacterized protein conserved in archaea (DUF2250) DUF5512 PF17631.2 139 pGCA_002101355_00029 - 185 0.094 12.7 0.0 1 1 3.5e-05 0.21 11.6 0.0 77 131 80 130 61 134 0.85 Family of unknown function (DUF5512) FapA PF03961.13 454 pGCA_002101355_00030 - 226 0.0039 15.9 6.9 1 1 1.3e-06 0.0039 15.9 6.9 332 412 3 89 1 140 0.82 Flagellar Assembly Protein A Ax_dynein_light PF10211.9 187 pGCA_002101355_00030 - 226 0.028 14.3 4.0 1 2 9.5e-06 0.028 14.3 4.0 121 182 3 64 1 69 0.87 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pGCA_002101355_00030 - 226 0.028 14.3 4.0 2 2 0.26 7.8e+02 -0.1 1.0 116 116 194 194 128 226 0.55 Axonemal dynein light chain Fib_alpha PF08702.10 143 pGCA_002101355_00030 - 226 0.6 10.3 12.2 1 3 2e-05 0.061 13.5 4.9 30 97 3 67 1 87 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_002101355_00030 - 226 0.6 10.3 12.2 2 3 0.84 2.5e+03 -1.4 0.0 82 121 109 149 79 160 0.62 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_002101355_00030 - 226 0.6 10.3 12.2 3 3 0.2 6.1e+02 0.5 0.2 34 56 196 218 178 225 0.65 Fibrinogen alpha/beta chain family DivIC PF04977.15 80 pGCA_002101355_00030 - 226 1.7 8.4 11.6 1 3 0.00031 0.92 9.3 2.0 21 52 5 36 2 48 0.84 Septum formation initiator DivIC PF04977.15 80 pGCA_002101355_00030 - 226 1.7 8.4 11.6 2 3 0.011 32 4.4 0.1 35 65 55 85 40 86 0.82 Septum formation initiator DivIC PF04977.15 80 pGCA_002101355_00030 - 226 1.7 8.4 11.6 3 3 0.47 1.4e+03 -0.9 0.5 21 41 194 214 188 223 0.73 Septum formation initiator Striatin PF08232.12 155 pGCA_002101355_00030 - 226 4.6 7.8 9.6 1 1 0.0047 14 6.2 9.6 29 88 5 69 3 225 0.72 Striatin family Syntaxin-6_N PF09177.11 99 pGCA_002101355_00030 - 226 9.3 6.9 10.2 1 2 0.00059 1.8 9.2 4.5 44 70 4 46 2 87 0.71 Syntaxin 6, N-terminal Syntaxin-6_N PF09177.11 99 pGCA_002101355_00030 - 226 9.3 6.9 10.2 2 2 0.58 1.7e+03 -0.4 0.3 47 47 196 196 140 225 0.54 Syntaxin 6, N-terminal SSB PF00436.25 104 pGCA_002101355_00032 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pGCA_002101355_00033 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pGCA_002101355_00033 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pGCA_002101355_00033 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pGCA_002101355_00033 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pGCA_002101355_00033 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pGCA_002101355_00033 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pGCA_002101355_00033 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pGCA_002101355_00034 - 328 8.6e-29 101.4 13.7 1 1 4.7e-32 1.2e-28 100.9 13.7 1 194 94 298 94 300 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pGCA_002101355_00034 - 328 0.006 16.7 1.1 1 3 1 2.6e+03 -1.4 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pGCA_002101355_00034 - 328 0.006 16.7 1.1 2 3 8.3e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pGCA_002101355_00034 - 328 0.006 16.7 1.1 3 3 4.5 1.1e+04 -3.4 0.0 61 77 301 317 292 325 0.69 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 pGCA_002101355_00034 - 328 0.018 15.7 0.9 1 2 2.3 5.9e+03 -2.1 0.0 54 72 123 141 102 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pGCA_002101355_00034 - 328 0.018 15.7 0.9 2 2 1.4e-05 0.036 14.7 0.2 31 84 208 270 197 308 0.84 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 pGCA_002101355_00034 - 328 0.041 14.6 11.0 1 2 0.061 1.6e+02 3.0 0.3 51 135 110 145 38 182 0.68 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pGCA_002101355_00034 - 328 0.041 14.6 11.0 2 2 1.2e-05 0.031 15.0 4.9 49 124 225 314 205 320 0.70 Apoptosis antagonizing transcription factor DUF3752 PF12572.8 152 pGCA_002101355_00034 - 328 1.4 9.5 6.4 1 2 0.0038 9.6 6.7 0.3 21 49 106 136 98 152 0.70 Protein of unknown function (DUF3752) DUF3752 PF12572.8 152 pGCA_002101355_00034 - 328 1.4 9.5 6.4 2 2 0.011 29 5.2 1.2 33 104 233 318 218 327 0.70 Protein of unknown function (DUF3752) THOC7 PF05615.13 132 pGCA_002101355_00034 - 328 2.8 8.2 12.1 1 2 0.00065 1.7 9.0 0.2 57 107 101 151 98 180 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pGCA_002101355_00034 - 328 2.8 8.2 12.1 2 2 0.13 3.4e+02 1.5 6.8 15 91 230 312 215 327 0.70 Tho complex subunit 7 Snapin_Pallidin PF14712.6 90 pGCA_002101355_00034 - 328 4.8 7.7 10.3 1 2 0.62 1.6e+03 -0.4 0.1 40 72 111 142 99 147 0.63 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 pGCA_002101355_00034 - 328 4.8 7.7 10.3 2 2 0.00076 1.9 8.9 5.5 30 82 239 292 209 299 0.84 Snapin/Pallidin TrbL PF04610.14 215 pGCA_002101355_00035 - 330 3.3e-29 102.2 32.7 1 2 5.5e-33 3.3e-29 102.2 32.7 1 214 38 250 38 251 0.92 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pGCA_002101355_00035 - 330 3.3e-29 102.2 32.7 2 2 0.16 9.4e+02 -0.6 0.1 55 91 281 327 256 330 0.61 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pGCA_002101355_00035 - 330 0.087 12.6 1.7 1 2 0.078 4.6e+02 0.7 0.2 33 66 62 102 58 116 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pGCA_002101355_00035 - 330 0.087 12.6 1.7 2 2 8.3e-05 0.49 10.2 0.1 27 81 230 286 198 298 0.73 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pGCA_002101355_00035 - 330 1.7 9.6 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 297 327 290 329 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pGCA_002101355_00036 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pGCA_002101355_00036 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pGCA_002101355_00037 - 219 1.6e-52 178.5 0.5 1 1 1.9e-56 1.7e-52 178.4 0.5 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pGCA_002101355_00037 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pGCA_002101355_00038 - 297 9.4e-56 188.9 1.6 1 1 1.7e-59 1.6e-55 188.2 1.6 2 211 31 272 30 272 0.92 Conjugal transfer protein Rho_RNA_bind PF07497.12 73 pGCA_002101355_00038 - 297 0.074 12.9 0.0 1 2 1.4 1.3e+04 -3.8 0.0 9 22 79 92 77 93 0.77 Rho termination factor, RNA-binding domain Rho_RNA_bind PF07497.12 73 pGCA_002101355_00038 - 297 0.074 12.9 0.0 2 2 2.2e-05 0.2 11.5 0.0 21 49 242 270 233 289 0.84 Rho termination factor, RNA-binding domain TrbI PF03743.14 187 pGCA_002101355_00039 - 393 7.4e-48 162.9 0.1 1 2 0.76 6.9e+03 -3.3 0.3 136 154 141 167 120 173 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pGCA_002101355_00039 - 393 7.4e-48 162.9 0.1 2 2 8.2e-52 7.4e-48 162.9 0.1 1 187 196 377 196 377 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pGCA_002101355_00039 - 393 0.044 12.9 0.1 1 1 7.7e-06 0.069 12.2 0.1 29 81 322 374 303 379 0.85 HaeIII restriction endonuclease T2SSE PF00437.20 273 pGCA_002101355_00040 - 335 7.7e-55 185.9 0.0 1 1 1.5e-57 8.9e-55 185.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pGCA_002101355_00040 - 335 7.4e-05 23.3 0.0 1 1 2.6e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_002101355_00040 - 335 0.00012 21.6 0.0 1 1 3e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pGCA_002101355_00040 - 335 0.00028 20.5 0.0 1 1 8.8e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pGCA_002101355_00040 - 335 0.0014 18.9 0.0 1 1 4.5e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 pGCA_002101355_00040 - 335 0.0014 18.4 0.0 1 1 3.9e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pGCA_002101355_00040 - 335 0.0023 17.7 0.0 1 1 9.2e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pGCA_002101355_00040 - 335 0.0035 17.3 0.0 1 1 1.2e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pGCA_002101355_00040 - 335 0.0055 15.7 0.0 1 1 1.3e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pGCA_002101355_00040 - 335 0.0073 16.2 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pGCA_002101355_00040 - 335 0.0087 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pGCA_002101355_00040 - 335 0.0092 15.9 0.0 1 1 2.3e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pGCA_002101355_00040 - 335 0.019 15.1 0.0 1 1 6.1e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain AAA_14 PF13173.6 131 pGCA_002101355_00040 - 335 0.02 14.9 0.1 1 2 3 1.8e+03 -1.1 0.0 73 104 35 65 15 73 0.83 AAA domain AAA_14 PF13173.6 131 pGCA_002101355_00040 - 335 0.02 14.9 0.1 2 2 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain TrwB_AAD_bind PF10412.9 386 pGCA_002101355_00040 - 335 0.021 13.8 0.0 1 1 5.9e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.6 61 pGCA_002101355_00040 - 335 0.024 14.4 0.0 1 1 8.8e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain ResIII PF04851.15 171 pGCA_002101355_00040 - 335 0.026 14.5 0.0 1 1 9.1e-05 0.053 13.5 0.0 5 50 147 186 132 244 0.73 Type III restriction enzyme, res subunit Sigma54_activat PF00158.26 168 pGCA_002101355_00040 - 335 0.026 14.2 0.0 1 1 9.3e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pGCA_002101355_00040 - 335 0.031 13.7 0.0 1 1 0.0001 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein ATP_bind_1 PF03029.17 241 pGCA_002101355_00040 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 pGCA_002101355_00040 - 335 0.045 14.1 0.0 1 1 0.00018 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 pGCA_002101355_00040 - 335 0.045 13.0 0.0 1 1 0.00013 0.077 12.3 0.0 14 49 158 193 146 207 0.84 Zeta toxin PRK PF00485.18 197 pGCA_002101355_00040 - 335 0.057 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pGCA_002101355_00040 - 335 0.065 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pGCA_002101355_00040 - 335 0.074 13.4 0.0 1 1 0.00019 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pGCA_002101355_00040 - 335 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pGCA_002101355_00040 - 335 0.1 12.6 0.5 1 1 0.00042 0.25 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 pGCA_002101355_00040 - 335 0.11 12.4 0.1 1 1 0.0004 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pGCA_002101355_00040 - 335 0.15 11.7 0.0 1 1 0.00041 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pGCA_002101355_00040 - 335 0.15 11.8 0.0 1 1 0.00042 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pGCA_002101355_00040 - 335 0.44 11.0 4.2 1 2 2.5 1.5e+03 -0.5 0.1 68 130 84 150 40 162 0.62 AAA domain AAA_23 PF13476.6 200 pGCA_002101355_00040 - 335 0.44 11.0 4.2 2 2 0.00057 0.33 11.4 1.4 22 37 163 178 151 184 0.88 AAA domain T4SS-DNA_transf PF02534.14 469 pGCA_002101355_00041 - 603 8.4e-104 348.0 0.1 1 1 2.6e-107 1.1e-103 347.5 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_002101355_00041 - 603 3.5e-24 85.2 0.0 1 1 1.5e-27 6.8e-24 84.3 0.0 2 125 406 528 405 529 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pGCA_002101355_00041 - 603 3.2e-15 55.9 0.0 1 2 1.6e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_002101355_00041 - 603 3.2e-15 55.9 0.0 2 2 1.3e-13 5.8e-10 38.6 0.0 187 369 347 531 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 pGCA_002101355_00041 - 603 0.19 11.8 0.2 1 1 7.4e-05 0.33 11.0 0.2 34 93 7 87 3 100 0.73 Putative Actinobacterial Holin-X, holin superfamily III Cag12 PF13117.6 97 pGCA_002101355_00042 - 143 2.9e-16 59.8 0.3 1 1 4.1e-20 3.7e-16 59.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pGCA_002101355_00042 - 143 0.078 12.8 0.4 1 1 2.3e-05 0.2 11.4 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 pGCA_002101355_00043 - 252 2.4e-38 131.5 1.9 1 1 3.5e-42 3.1e-38 131.2 1.9 1 154 25 190 25 192 0.88 TrbM HpaB PF03241.13 202 pGCA_002101355_00043 - 252 0.21 10.6 0.1 1 2 0.047 4.2e+02 -0.1 0.0 20 39 17 36 4 37 0.76 4-hydroxyphenylacetate 3-hydroxylase C terminal HpaB PF03241.13 202 pGCA_002101355_00043 - 252 0.21 10.6 0.1 2 2 0.00014 1.3 8.1 0.0 57 101 117 161 105 164 0.90 4-hydroxyphenylacetate 3-hydroxylase C terminal PRELI PF04707.14 157 pGCA_002101355_00044 - 265 0.041 13.7 0.4 1 2 0.62 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pGCA_002101355_00044 - 265 0.041 13.7 0.4 2 2 4.6e-06 0.041 13.7 0.4 96 155 83 147 69 149 0.85 PRELI-like family Rsd_AlgQ PF04353.13 150 pGCA_002101355_00044 - 265 0.82 9.6 6.3 1 3 0.22 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_002101355_00044 - 265 0.82 9.6 6.3 2 3 2.6e-05 0.24 11.4 1.9 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_002101355_00044 - 265 0.82 9.6 6.3 3 3 0.9 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ KH_5 PF13184.6 69 pGCA_002101355_00045 - 45 0.00035 20.6 0.5 1 1 2.2e-08 0.00039 20.5 0.5 4 41 2 39 1 40 0.97 NusA-like KH domain CdhD PF03599.16 386 pGCA_002101355_00046 - 206 0.0071 15.1 0.0 1 1 1.9e-06 0.012 14.4 0.0 283 358 11 87 2 96 0.87 CO dehydrogenase/acetyl-CoA synthase delta subunit Redoxin PF08534.10 147 pGCA_002101355_00046 - 206 0.028 14.1 0.9 1 2 0.082 4.9e+02 0.4 0.1 119 146 11 36 4 37 0.82 Redoxin Redoxin PF08534.10 147 pGCA_002101355_00046 - 206 0.028 14.1 0.9 2 2 3e-05 0.18 11.5 0.1 49 76 144 173 138 191 0.79 Redoxin YnfE PF17452.2 78 pGCA_002101355_00046 - 206 0.12 12.6 0.1 1 3 2.1e-05 0.12 12.6 0.1 11 33 10 32 5 47 0.88 Uncharacterized YnfE-like YnfE PF17452.2 78 pGCA_002101355_00046 - 206 0.12 12.6 0.1 2 3 0.31 1.8e+03 -0.7 0.3 36 50 143 157 136 185 0.64 Uncharacterized YnfE-like YnfE PF17452.2 78 pGCA_002101355_00046 - 206 0.12 12.6 0.1 3 3 0.84 5e+03 -2.1 1.5 26 38 184 195 170 205 0.48 Uncharacterized YnfE-like DUF1461 PF07314.11 189 pGCA_002101355_00047 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) Topoisom_bac PF01131.20 413 pGCA_002101355_00048 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pGCA_002101355_00048 - 730 6.3e-12 45.6 2.6 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pGCA_002101355_00048 - 730 6.3e-12 45.6 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pGCA_002101355_00048 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pGCA_002101355_00048 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pGCA_002101355_00048 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_002101355_00048 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_002101355_00048 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pGCA_002101355_00048 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pGCA_002101355_00048 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pGCA_002101355_00048 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pGCA_002101355_00048 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pGCA_002101355_00048 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pGCA_002101355_00048 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pGCA_002101355_00048 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pGCA_002101355_00048 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pGCA_002101355_00048 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pGCA_002101355_00048 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pGCA_002101355_00048 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pGCA_002101355_00048 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pGCA_002101355_00048 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pGCA_002101355_00048 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_002101355_00048 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_002101355_00048 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pGCA_002101355_00048 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pGCA_002101355_00048 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pGCA_002101355_00048 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_002101355_00048 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pGCA_002101355_00048 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pGCA_002101355_00048 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pGCA_002101355_00048 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pGCA_002101355_00048 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pGCA_002101355_00048 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pGCA_002101355_00048 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pGCA_002101355_00049 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pGCA_002101355_00049 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain HicB_lk_antitox PF15919.5 123 pGCA_002209045_00002 - 72 3.6e-09 36.8 0.0 1 1 4.2e-13 3.8e-09 36.7 0.0 3 60 5 61 3 71 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system IMD PF08397.11 219 pGCA_002209045_00002 - 72 0.065 12.6 0.0 1 1 7.9e-06 0.071 12.5 0.0 12 60 21 69 15 72 0.92 IRSp53/MIM homology domain AAA_25 PF13481.6 194 pGCA_002209045_00003 - 597 1.7e-15 57.1 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 pGCA_002209045_00003 - 597 0.00083 18.8 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_002209045_00003 - 597 0.00083 18.8 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_002209045_00003 - 597 0.0013 18.5 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_002209045_00003 - 597 0.0013 18.5 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 pGCA_002209045_00003 - 597 0.003 17.3 1.1 1 2 3e-06 0.009 15.7 0.2 5 121 36 171 32 187 0.69 AAA domain AAA_24 PF13479.6 197 pGCA_002209045_00003 - 597 0.003 17.3 1.1 2 2 0.38 1.1e+03 -0.9 0.0 98 150 268 321 210 358 0.78 AAA domain ATPase PF06745.13 231 pGCA_002209045_00003 - 597 0.009 15.4 0.0 1 2 2.1e-05 0.062 12.6 0.0 16 70 30 83 25 214 0.86 KaiC ATPase PF06745.13 231 pGCA_002209045_00003 - 597 0.009 15.4 0.0 2 2 0.4 1.2e+03 -1.4 0.0 135 160 327 352 318 358 0.83 KaiC CbiA PF01656.23 128 pGCA_002209045_00003 - 597 0.19 11.8 1.3 1 1 0.00021 0.63 10.1 1.3 1 29 35 63 35 543 0.94 CobQ/CobB/MinD/ParA nucleotide binding domain GBR_NSP5 PF17580.2 176 pGCA_002209045_00004 - 141 0.012 15.5 0.4 1 1 1.1e-06 0.02 14.7 0.4 17 64 34 81 17 89 0.78 Group B Rotavirus Non-structural protein 5 Resolvase PF00239.21 146 pGCA_002209045_00006 - 204 2.4e-34 118.5 0.6 1 1 7.4e-38 3.3e-34 118.1 0.6 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pGCA_002209045_00006 - 204 0.025 14.3 0.6 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_002209045_00006 - 204 0.025 14.3 0.6 2 3 0.0021 9.6 6.1 0.0 2 36 117 152 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_002209045_00006 - 204 0.025 14.3 0.6 3 3 0.0036 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pGCA_002209045_00006 - 204 0.051 13.6 4.8 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_002209045_00006 - 204 0.051 13.6 4.8 2 3 1.5 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_002209045_00006 - 204 0.051 13.6 4.8 3 3 0.024 1.1e+02 3.0 0.1 39 55 159 175 153 177 0.91 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pGCA_002209045_00006 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_002209045_00006 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_002209045_00006 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pGCA_002209045_00007 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pGCA_002209045_00007 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pGCA_002209045_00007 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pGCA_002209045_00009 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pGCA_002209045_00009 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pGCA_002209045_00010 - 922 7.6e-52 176.4 0.8 1 1 4.1e-55 1.9e-51 175.1 0.8 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pGCA_002209045_00010 - 922 1.5e-20 73.2 1.0 1 1 5.8e-24 2.6e-20 72.4 1.0 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 pGCA_002209045_00010 - 922 3.8e-07 29.3 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 pGCA_002209045_00010 - 922 0.038 14.1 5.5 1 5 0.46 2.1e+03 -1.4 0.1 96 202 139 253 124 278 0.55 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_002209045_00010 - 922 0.038 14.1 5.5 2 5 0.36 1.6e+03 -1.0 0.1 88 126 264 300 242 418 0.70 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_002209045_00010 - 922 0.038 14.1 5.5 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_002209045_00010 - 922 0.038 14.1 5.5 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_002209045_00010 - 922 0.038 14.1 5.5 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain Phage_pRha PF09669.10 88 pGCA_002209045_00011 - 185 6.7e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pGCA_002209045_00011 - 185 0.0015 18.6 0.0 1 1 8.6e-07 0.0031 17.6 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pGCA_002209045_00011 - 185 0.026 14.1 0.3 1 2 0.05 1.8e+02 1.6 0.1 80 118 33 71 5 80 0.74 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pGCA_002209045_00011 - 185 0.026 14.1 0.3 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pGCA_002209045_00011 - 185 0.081 12.9 0.1 1 1 6.1e-05 0.22 11.5 0.0 77 131 80 130 69 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pGCA_002209045_00011 - 185 0.83 9.7 7.1 1 3 0.019 69 3.6 0.1 40 53 12 25 3 29 0.83 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pGCA_002209045_00011 - 185 0.83 9.7 7.1 2 3 0.0022 7.9 6.6 0.9 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pGCA_002209045_00011 - 185 0.83 9.7 7.1 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 DUF3895 PF13034.6 76 pGCA_002209045_00012 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 pGCA_002209045_00012 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) SSB PF00436.25 104 pGCA_002209045_00013 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pGCA_002209045_00014 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pGCA_002209045_00014 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pGCA_002209045_00014 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pGCA_002209045_00014 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pGCA_002209045_00014 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pGCA_002209045_00014 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pGCA_002209045_00014 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pGCA_002209045_00015 - 323 4.7e-28 98.9 14.1 1 1 2.7e-31 6.1e-28 98.6 14.1 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pGCA_002209045_00015 - 323 0.0059 16.7 0.7 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pGCA_002209045_00015 - 323 0.0059 16.7 0.7 2 2 9.1e-06 0.02 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pGCA_002209045_00015 - 323 0.011 16.4 5.4 1 3 0.067 1.5e+02 3.0 0.3 92 135 104 145 41 149 0.59 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pGCA_002209045_00015 - 323 0.011 16.4 5.4 2 3 0.12 2.6e+02 2.2 0.5 52 135 111 145 93 185 0.58 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pGCA_002209045_00015 - 323 0.011 16.4 5.4 3 3 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pGCA_002209045_00015 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pGCA_002209045_00015 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pGCA_002209045_00015 - 323 0.069 13.8 0.9 1 2 2.2 4.9e+03 -1.8 0.0 55 72 124 141 101 172 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 pGCA_002209045_00015 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain Allexi_40kDa PF05549.11 271 pGCA_002209045_00015 - 323 0.81 9.1 5.0 1 2 0.21 4.8e+02 0.1 0.1 37 123 47 138 33 177 0.61 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pGCA_002209045_00015 - 323 0.81 9.1 5.0 2 2 0.0002 0.46 10.0 1.6 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein THOC7 PF05615.13 132 pGCA_002209045_00015 - 323 3 8.1 11.6 1 2 0.00072 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pGCA_002209045_00015 - 323 3 8.1 11.6 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 DHR10 PF18595.1 117 pGCA_002209045_00015 - 323 5.7 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pGCA_002209045_00015 - 323 5.7 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain TrbL PF04610.14 215 pGCA_002209045_00016 - 332 2.8e-30 105.7 31.4 1 2 4.7e-34 2.8e-30 105.7 31.4 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pGCA_002209045_00016 - 332 2.8e-30 105.7 31.4 2 2 0.24 1.4e+03 -1.2 0.1 61 91 293 329 260 332 0.58 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pGCA_002209045_00016 - 332 0.16 11.8 1.2 1 2 0.16 9.4e+02 -0.3 0.1 35 67 67 105 60 118 0.65 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pGCA_002209045_00016 - 332 0.16 11.8 1.2 2 2 0.00011 0.68 9.8 0.1 28 81 238 288 209 301 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pGCA_002209045_00016 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pGCA_002209045_00017 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pGCA_002209045_00017 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pGCA_002209045_00018 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pGCA_002209045_00018 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pGCA_002209045_00019 - 295 2e-54 184.5 1.5 1 1 3.7e-58 3.3e-54 183.8 1.5 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pGCA_002209045_00019 - 295 0.072 12.9 0.5 1 2 1.8e-05 0.16 11.8 0.0 1 51 1 51 1 66 0.92 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pGCA_002209045_00019 - 295 0.072 12.9 0.5 2 2 1.1 9.7e+03 -3.7 0.1 50 62 130 142 124 149 0.68 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pGCA_002209045_00020 - 391 3.3e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pGCA_002209045_00020 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pGCA_002209045_00021 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pGCA_002209045_00021 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_002209045_00021 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pGCA_002209045_00021 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pGCA_002209045_00021 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pGCA_002209045_00021 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pGCA_002209045_00021 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pGCA_002209045_00021 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pGCA_002209045_00021 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pGCA_002209045_00021 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pGCA_002209045_00021 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pGCA_002209045_00021 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pGCA_002209045_00021 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pGCA_002209045_00021 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pGCA_002209045_00021 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pGCA_002209045_00021 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pGCA_002209045_00021 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pGCA_002209045_00021 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pGCA_002209045_00021 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pGCA_002209045_00021 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pGCA_002209045_00021 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pGCA_002209045_00021 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pGCA_002209045_00021 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pGCA_002209045_00021 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pGCA_002209045_00021 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pGCA_002209045_00021 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pGCA_002209045_00021 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pGCA_002209045_00021 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pGCA_002209045_00021 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pGCA_002209045_00021 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pGCA_002209045_00021 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pGCA_002209045_00021 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pGCA_002209045_00022 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_002209045_00022 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pGCA_002209045_00022 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_002209045_00022 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pGCA_002209045_00022 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pGCA_002209045_00023 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pGCA_002209045_00023 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pGCA_002209045_00023 - 145 0.08 12.7 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pGCA_002209045_00023 - 145 3.9 7.4 5.6 1 2 0.00081 3.6 7.5 2.3 36 49 29 42 2 47 0.91 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pGCA_002209045_00023 - 145 3.9 7.4 5.6 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pGCA_002209045_00024 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pGCA_002209045_00025 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pGCA_002209045_00025 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pGCA_002209045_00025 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pGCA_002209045_00025 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_002209045_00025 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_002209045_00025 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pGCA_002209045_00027 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pGCA_002209045_00027 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pGCA_002209045_00028 - 676 1.4e-97 327.4 8.2 1 1 6.3e-101 1.9e-97 326.9 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pGCA_002209045_00028 - 676 3.7e-12 46.4 2.7 1 2 1.9e-15 5.7e-12 45.8 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pGCA_002209045_00028 - 676 3.7e-12 46.4 2.7 2 2 1.3 3.8e+03 -1.8 0.6 77 77 520 520 476 566 0.60 Toprim domain zf-C4_Topoisom PF01396.19 39 pGCA_002209045_00028 - 676 0.05 13.4 2.1 1 1 4.7e-05 0.14 12.0 2.1 2 27 628 656 627 664 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pGCA_002209045_00028 - 676 0.05 13.9 0.7 1 2 2.9 8.5e+03 -2.9 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_002209045_00028 - 676 0.05 13.9 0.7 2 2 2.7e-05 0.079 13.2 0.0 18 35 624 641 614 641 0.76 zinc-ribbon EF-hand_8 PF13833.6 55 pGCA_002209045_00028 - 676 0.083 12.8 0.0 1 1 9.3e-05 0.28 11.1 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 pGCA_002209045_00028 - 676 0.34 11.1 3.3 1 3 0.59 1.8e+03 -0.8 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_002209045_00028 - 676 0.34 11.1 3.3 2 3 1.7 5.2e+03 -2.3 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_002209045_00028 - 676 0.34 11.1 3.3 3 3 0.00026 0.78 10.0 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain PcfJ PF14284.6 144 pGCA_002209045_00029 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pGCA_002209045_00029 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pGCA_002209045_00031 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pGCA_002209045_00031 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pGCA_002209045_00031 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pGCA_002209045_00031 - 639 9.3e-17 60.9 0.0 1 1 1.2e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pGCA_002209045_00031 - 639 1.3e-12 47.6 0.1 1 1 1.5e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pGCA_002209045_00031 - 639 1.9e-06 28.0 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pGCA_002209045_00031 - 639 0.0003 21.1 0.0 1 1 3.6e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pGCA_002209045_00031 - 639 0.018 14.8 0.0 1 1 1.9e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pGCA_002209045_00031 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pGCA_002209045_00031 - 639 0.046 13.0 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family DUF5442 PF17514.2 107 pGCA_002209045_00032 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pGCA_002209045_00032 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 pGCA_002209045_00034 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pGCA_002209045_00034 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pGCA_002209045_00034 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 pGCA_002209045_00035 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pGCA_002209045_00035 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pGCA_002209045_00035 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pGCA_002209045_00035 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pGCA_002209045_00036 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pGCA_002209045_00036 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 pGCA_002209045_00037 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pGCA_002209045_00037 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pGCA_002209045_00037 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pGCA_002209045_00037 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pGCA_002209045_00037 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pGCA_002209045_00037 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pGCA_002209045_00037 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pGCA_002209045_00037 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pGCA_002209045_00037 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 pGCA_002209045_00038 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pGCA_002209045_00038 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pGCA_002209045_00038 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pGCA_002209045_00038 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pGCA_002209045_00038 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pGCA_002209045_00038 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pGCA_002209045_00039 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pGCA_002209045_00039 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pGCA_002209045_00040 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pGCA_002209045_00040 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pGCA_002209045_00040 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_002209045_00040 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pGCA_002209045_00040 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pGCA_002209045_00040 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pGCA_002209045_00041 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pGCA_002209045_00042 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_002209045_00042 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_002209045_00042 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 pGCA_002209045_00042 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_002209045_00042 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_002209045_00042 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pGCA_002209045_00042 - 1932 9.9e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pGCA_002209045_00042 - 1932 9.9e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pGCA_002209045_00042 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pGCA_002209045_00042 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 pGCA_002209045_00042 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pGCA_002209045_00042 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 pGCA_002209045_00043 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pGCA_002209045_00043 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 pGCA_002209045_00044 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_002209045_00044 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pGCA_002209045_00045 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_002209045_00045 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_002209045_00045 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pGCA_002209045_00045 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pGCA_002209045_00045 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_002209045_00045 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_002209045_00045 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pGCA_002209045_00045 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pGCA_002209045_00045 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pGCA_002209045_00045 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pGCA_002209045_00045 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 pGCA_002209045_00046 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pGCA_002209045_00046 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pGCA_002209045_00046 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pGCA_002209045_00046 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pGCA_002209045_00046 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 pGCA_002209045_00049 - 410 2.4e-08 34.2 0.1 1 2 1.1 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pGCA_002209045_00049 - 410 2.4e-08 34.2 0.1 2 2 1.1e-11 6.4e-08 32.8 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pGCA_002209045_00049 - 410 0.016 15.4 0.1 1 2 0.018 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pGCA_002209045_00049 - 410 0.016 15.4 0.1 2 2 0.00021 1.2 9.4 0.0 15 83 283 359 277 378 0.81 Retrotransposon gag protein 5_3_exonuc PF01367.20 97 pGCA_002209045_00049 - 410 0.33 11.6 2.5 1 2 0.47 2.8e+03 -1.0 0.1 28 43 166 181 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_002209045_00049 - 410 0.33 11.6 2.5 2 2 7.8e-05 0.47 11.1 0.4 15 81 322 384 321 405 0.71 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pGCA_002209045_00050 - 87 0.0072 16.3 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pGCA_002209045_00050 - 87 0.0072 16.3 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pGCA_002209045_00050 - 87 0.12 12.4 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain TOPRIM_C PF16898.5 128 pGCA_002209045_00051 - 69 0.029 14.7 1.5 1 1 1.7e-06 0.031 14.6 1.5 63 124 8 68 2 69 0.88 C-terminal associated domain of TOPRIM Pkinase PF00069.25 264 pGCA_002209045_00052 - 189 4.3e-19 68.9 4.7 1 1 1.1e-22 4.9e-19 68.7 4.7 52 237 1 180 1 189 0.77 Protein kinase domain Pkinase_Tyr PF07714.17 259 pGCA_002209045_00052 - 189 3.7e-18 65.8 0.5 1 1 8.2e-22 3.7e-18 65.8 0.5 55 164 1 108 1 185 0.81 Protein tyrosine kinase Pkinase_fungal PF17667.1 408 pGCA_002209045_00052 - 189 1.3e-06 27.4 0.6 1 1 3.8e-10 1.7e-06 27.1 0.6 314 364 53 100 37 123 0.79 Fungal protein kinase Kinase-like PF14531.6 288 pGCA_002209045_00052 - 189 0.072 12.4 0.0 1 2 4.7e-05 0.21 10.9 0.0 136 186 36 87 18 112 0.78 Kinase-like Kinase-like PF14531.6 288 pGCA_002209045_00052 - 189 0.072 12.4 0.0 2 2 0.2 9.2e+02 -1.1 0.0 94 124 120 150 94 179 0.58 Kinase-like LysE PF01810.18 193 pGCA_002214785_00001 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 pGCA_002214785_00001 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pGCA_002214785_00001 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 pGCA_002214785_00001 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 pGCA_002214785_00001 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 pGCA_002214785_00001 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 pGCA_002214785_00001 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 pGCA_002214785_00001 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 pGCA_002214785_00001 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pGCA_002214785_00001 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pGCA_002214785_00001 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 pGCA_002214785_00001 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 pGCA_002214785_00002 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pGCA_002214785_00002 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pGCA_002214785_00002 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pGCA_002214785_00002 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pGCA_002214785_00002 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pGCA_002214785_00002 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pGCA_002214785_00003 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pGCA_002214785_00003 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pGCA_002214785_00004 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pGCA_002214785_00004 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pGCA_002214785_00004 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_002214785_00004 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pGCA_002214785_00004 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pGCA_002214785_00004 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pGCA_002214785_00005 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pGCA_002214785_00006 - 1932 3.5e-16 58.9 1.1 1 3 2.1e-19 7.4e-16 57.8 0.1 57 245 1018 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_002214785_00006 - 1932 3.5e-16 58.9 1.1 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_002214785_00006 - 1932 3.5e-16 58.9 1.1 3 3 1.1 3.9e+03 -3.8 0.0 172 198 1879 1906 1860 1920 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pGCA_002214785_00006 - 1932 4e-08 33.4 8.0 1 2 1.1e-11 4e-08 33.4 8.0 2 148 1000 1212 999 1243 0.71 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_002214785_00006 - 1932 4e-08 33.4 8.0 2 2 0.31 1.1e+03 -0.5 5.3 36 121 1801 1904 1750 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pGCA_002214785_00006 - 1932 1.2e-06 28.8 0.2 1 2 0.24 8.7e+02 0.3 0.0 45 73 1077 1105 1030 1108 0.80 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pGCA_002214785_00006 - 1932 1.2e-06 28.8 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pGCA_002214785_00006 - 1932 5.8e-06 26.2 1.2 1 2 3.6e-07 0.0013 18.5 0.2 2 108 1004 1109 1003 1205 0.58 DEAD/DEAH box helicase DEAD PF00270.29 176 pGCA_002214785_00006 - 1932 5.8e-06 26.2 1.2 2 2 0.11 3.9e+02 0.7 0.0 119 150 1883 1916 1827 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 pGCA_002214785_00006 - 1932 3.7e-05 24.2 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pGCA_002214785_00006 - 1932 3.7e-05 24.2 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 664 701 655 716 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 pGCA_002214785_00007 - 234 0.0008 19.8 0.1 1 1 4.4e-07 0.002 18.5 0.1 29 75 79 143 7 144 0.70 Acetyltransferase (GNAT) domain DUF2768 PF10966.8 58 pGCA_002214785_00007 - 234 0.011 16.1 0.9 1 1 5.7e-06 0.026 15.0 0.9 23 52 203 232 201 233 0.94 Protein of unknown function (DUF2768) Acetyltransf_1 PF00583.25 117 pGCA_002214785_00007 - 234 0.021 15.1 0.1 1 1 1.1e-05 0.051 13.8 0.1 59 92 66 109 30 142 0.69 Acetyltransferase (GNAT) family GramPos_pilinBB PF16569.5 115 pGCA_002214785_00007 - 234 0.22 12.3 4.3 1 2 3.8e-05 0.17 12.7 1.7 56 111 16 72 2 76 0.74 Gram-positive pilin backbone subunit 2, Cna-B-like domain GramPos_pilinBB PF16569.5 115 pGCA_002214785_00007 - 234 0.22 12.3 4.3 2 2 0.4 1.8e+03 -0.3 0.0 20 62 128 174 112 198 0.60 Gram-positive pilin backbone subunit 2, Cna-B-like domain CooC_C PF15976.5 93 pGCA_002214785_00009 - 444 0.12 12.4 0.4 1 2 6.9e-05 0.62 10.2 0.2 22 76 47 101 38 112 0.84 CS1-pili formation C-terminal CooC_C PF15976.5 93 pGCA_002214785_00009 - 444 0.12 12.4 0.4 2 2 0.22 2e+03 -1.1 0.0 11 34 419 442 416 444 0.81 CS1-pili formation C-terminal EVI2A PF05399.11 232 pGCA_002214785_00009 - 444 2.8 7.5 10.5 1 1 0.00068 6.1 6.4 10.5 19 108 14 101 10 112 0.83 Ectropic viral integration site 2A protein (EVI2A) Peptidase_C39 PF03412.15 133 pGCA_002214785_00011 - 197 9e-18 64.4 0.0 1 1 1.9e-21 1.2e-17 64.0 0.0 2 124 33 162 32 176 0.81 Peptidase C39 family Peptidase_C70 PF12385.8 145 pGCA_002214785_00011 - 197 0.00011 22.2 0.0 1 1 2.6e-08 0.00016 21.7 0.0 11 131 37 147 20 158 0.78 Papain-like cysteine protease AvrRpt2 Peptidase_C39_2 PF13529.6 144 pGCA_002214785_00011 - 197 0.086 13.4 0.0 1 1 2.9e-05 0.18 12.4 0.0 6 143 36 143 31 144 0.67 Peptidase_C39 like family Relaxase PF03432.14 242 pGCA_002214785_00013 - 462 1.6e-10 41.1 7.7 1 2 8.7e-15 1.6e-10 41.1 7.7 48 229 119 297 70 310 0.74 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_002214785_00013 - 462 1.6e-10 41.1 7.7 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pGCA_002214785_00014 - 183 4.6e-05 23.3 7.5 1 3 3.3e-05 0.15 12.1 0.3 24 45 17 38 10 44 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_002214785_00014 - 183 4.6e-05 23.3 7.5 2 3 0.38 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_002214785_00014 - 183 4.6e-05 23.3 7.5 3 3 1e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pGCA_002214785_00014 - 183 0.032 14.4 2.3 1 1 9.1e-06 0.041 14.0 1.6 54 131 18 103 9 124 0.73 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pGCA_002214785_00014 - 183 0.1 12.7 5.3 1 2 0.0054 24 5.1 0.7 10 46 55 91 53 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_002214785_00014 - 183 0.1 12.7 5.3 2 2 0.00034 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pGCA_002214785_00014 - 183 0.48 10.7 7.2 1 2 0.022 1e+02 3.2 0.6 2 23 9 30 8 69 0.71 DNA sulphur modification protein DndE DndE PF08870.11 112 pGCA_002214785_00014 - 183 0.48 10.7 7.2 2 2 0.00012 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 pGCA_002214785_00015 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pGCA_002214785_00015 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pGCA_002214785_00015 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pGCA_002214785_00015 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pGCA_002214785_00015 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 pGCA_002214785_00018 - 409 2.3e-08 34.3 0.2 1 2 1 6.1e+03 -2.3 0.0 55 74 161 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pGCA_002214785_00018 - 409 2.3e-08 34.3 0.2 2 2 1.1e-11 6.4e-08 32.9 0.0 3 93 271 375 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pGCA_002214785_00018 - 409 0.024 14.9 0.1 1 2 0.028 1.6e+02 2.6 0.3 41 60 149 169 121 180 0.81 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pGCA_002214785_00018 - 409 0.024 14.9 0.1 2 2 0.00021 1.2 9.4 0.0 15 83 283 359 277 378 0.81 Retrotransposon gag protein 5_3_exonuc PF01367.20 97 pGCA_002214785_00018 - 409 0.36 11.5 2.6 1 2 0.48 2.9e+03 -1.1 0.1 28 42 166 180 130 205 0.64 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_002214785_00018 - 409 0.36 11.5 2.6 2 2 7.8e-05 0.47 11.1 0.4 15 81 322 384 321 405 0.71 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pGCA_002214785_00019 - 92 0.0072 16.3 0.0 1 1 1.5e-06 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pGCA_002214785_00019 - 92 0.15 12.0 0.0 1 1 4e-05 0.36 10.8 0.0 9 39 22 56 16 59 0.84 STI1 domain DUF1451 PF07295.11 147 pGCA_002214785_00020 - 67 0.00056 20.0 0.0 1 1 3.5e-08 0.00063 19.8 0.0 107 137 9 39 2 44 0.88 Zinc-ribbon containing domain DUF4145 PF13643.6 88 pGCA_002214785_00021 - 207 2.5e-16 59.6 5.0 1 3 0.88 1.6e+04 -3.9 0.0 35 43 76 84 67 86 0.66 Domain of unknown function (DUF4145) DUF4145 PF13643.6 88 pGCA_002214785_00021 - 207 2.5e-16 59.6 5.0 2 3 8.1e-20 1.4e-15 57.1 0.1 1 76 87 161 87 172 0.91 Domain of unknown function (DUF4145) DUF4145 PF13643.6 88 pGCA_002214785_00021 - 207 2.5e-16 59.6 5.0 3 3 0.0019 34 4.7 0.6 21 52 177 203 161 207 0.77 Domain of unknown function (DUF4145) Glyco_hydro_16 PF00722.21 177 pGCA_002214785_00024 - 46 0.081 12.4 0.4 1 1 4.5e-06 0.081 12.4 0.4 108 130 11 33 2 41 0.83 Glycosyl hydrolases family 16 HicB_lk_antitox PF15919.5 123 pGCA_002214785_00025 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pGCA_002214785_00026 - 67 6.2e-11 42.2 0.3 1 1 4.1e-15 7.4e-11 41.9 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pGCA_002214785_00027 - 597 1.8e-15 57.0 0.0 1 1 1.1e-18 3.3e-15 56.2 0.0 30 193 30 175 17 176 0.86 AAA domain DnaB_C PF03796.15 255 pGCA_002214785_00027 - 597 0.00087 18.7 0.0 1 2 1.4e-06 0.0041 16.5 0.0 16 111 30 130 23 156 0.82 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_002214785_00027 - 597 0.00087 18.7 0.0 2 2 0.021 63 2.8 0.0 121 183 112 176 95 179 0.78 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_002214785_00027 - 597 0.0012 18.6 0.0 1 2 8e-06 0.024 14.4 0.0 46 85 32 71 20 85 0.88 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_002214785_00027 - 597 0.0012 18.6 0.0 2 2 0.11 3.4e+02 0.8 0.0 96 118 108 130 98 170 0.72 IstB-like ATP binding protein AAA_24 PF13479.6 197 pGCA_002214785_00027 - 597 0.0035 17.1 0.0 1 1 2.5e-06 0.0073 16.0 0.0 5 122 36 172 32 207 0.72 AAA domain ATPase PF06745.13 231 pGCA_002214785_00027 - 597 0.011 15.1 0.1 1 2 2.1e-05 0.064 12.6 0.0 16 70 30 83 26 214 0.87 KaiC ATPase PF06745.13 231 pGCA_002214785_00027 - 597 0.011 15.1 0.1 2 2 0.51 1.5e+03 -1.7 0.0 137 160 329 352 321 358 0.83 KaiC CbiA PF01656.23 128 pGCA_002214785_00027 - 597 0.18 11.9 0.9 1 1 0.00018 0.53 10.4 1.0 1 29 35 63 35 537 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain GBR_NSP5 PF17580.2 176 pGCA_002214785_00028 - 141 0.012 15.5 0.4 1 1 1.1e-06 0.02 14.7 0.4 17 64 34 81 17 89 0.78 Group B Rotavirus Non-structural protein 5 Resolvase PF00239.21 146 pGCA_002214785_00030 - 204 1.6e-33 115.9 0.7 1 1 4.7e-37 2.1e-33 115.5 0.7 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pGCA_002214785_00030 - 204 0.024 14.4 0.8 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_002214785_00030 - 204 0.024 14.4 0.8 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_002214785_00030 - 204 0.024 14.4 0.8 3 3 0.01 46 3.9 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pGCA_002214785_00030 - 204 0.028 14.5 4.9 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_002214785_00030 - 204 0.028 14.5 4.9 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_002214785_00030 - 204 0.028 14.5 4.9 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pGCA_002214785_00030 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_002214785_00030 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_002214785_00030 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pGCA_002214785_00031 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pGCA_002214785_00031 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pGCA_002214785_00031 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pGCA_002214785_00033 - 87 4.9e-14 52.3 5.8 1 1 6.2e-18 5.6e-14 52.2 5.8 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pGCA_002214785_00033 - 87 0.59 10.0 6.1 1 1 0.00014 1.3 8.9 6.0 108 135 60 87 15 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pGCA_002214785_00034 - 922 7.4e-52 176.4 0.8 1 1 4.1e-55 1.9e-51 175.1 0.8 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pGCA_002214785_00034 - 922 3.6e-21 75.2 0.8 1 1 1.4e-24 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 pGCA_002214785_00034 - 922 3.9e-07 29.3 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 pGCA_002214785_00034 - 922 0.033 14.3 5.2 1 5 0.52 2.3e+03 -1.6 0.1 96 202 139 253 129 274 0.53 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_002214785_00034 - 922 0.033 14.3 5.2 2 5 0.35 1.6e+03 -1.0 0.1 88 126 264 300 242 418 0.70 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_002214785_00034 - 922 0.033 14.3 5.2 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_002214785_00034 - 922 0.033 14.3 5.2 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_002214785_00034 - 922 0.033 14.3 5.2 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain Phage_pRha PF09669.10 88 pGCA_002214785_00035 - 185 6.7e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pGCA_002214785_00035 - 185 0.0015 18.6 0.0 1 1 8.6e-07 0.0031 17.6 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pGCA_002214785_00035 - 185 0.026 14.1 0.3 1 2 0.05 1.8e+02 1.6 0.1 80 118 33 71 5 80 0.74 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pGCA_002214785_00035 - 185 0.026 14.1 0.3 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pGCA_002214785_00035 - 185 0.081 12.9 0.1 1 1 6.1e-05 0.22 11.5 0.0 77 131 80 130 69 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pGCA_002214785_00035 - 185 0.83 9.7 7.1 1 3 0.019 69 3.6 0.1 40 53 12 25 3 29 0.83 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pGCA_002214785_00035 - 185 0.83 9.7 7.1 2 3 0.0022 7.9 6.6 0.9 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pGCA_002214785_00035 - 185 0.83 9.7 7.1 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 DUF3895 PF13034.6 76 pGCA_002214785_00036 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 pGCA_002214785_00036 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) SSB PF00436.25 104 pGCA_002214785_00037 - 141 7e-25 87.1 0.1 1 1 4.9e-29 8.8e-25 86.8 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pGCA_002214785_00038 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pGCA_002214785_00038 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pGCA_002214785_00038 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pGCA_002214785_00038 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pGCA_002214785_00038 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pGCA_002214785_00038 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pGCA_002214785_00038 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pGCA_002214785_00039 - 323 4.7e-28 98.9 14.1 1 1 2.7e-31 6.1e-28 98.6 14.1 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pGCA_002214785_00039 - 323 0.0059 16.7 0.7 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pGCA_002214785_00039 - 323 0.0059 16.7 0.7 2 2 9.1e-06 0.02 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pGCA_002214785_00039 - 323 0.011 16.4 5.4 1 3 0.067 1.5e+02 3.0 0.3 92 135 104 145 41 149 0.59 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pGCA_002214785_00039 - 323 0.011 16.4 5.4 2 3 0.12 2.6e+02 2.2 0.5 52 135 111 145 93 185 0.58 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pGCA_002214785_00039 - 323 0.011 16.4 5.4 3 3 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pGCA_002214785_00039 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pGCA_002214785_00039 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pGCA_002214785_00039 - 323 0.069 13.8 0.9 1 2 2.2 4.9e+03 -1.8 0.0 55 72 124 141 101 172 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 pGCA_002214785_00039 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain Allexi_40kDa PF05549.11 271 pGCA_002214785_00039 - 323 0.81 9.1 5.0 1 2 0.21 4.8e+02 0.1 0.1 37 123 47 138 33 177 0.61 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pGCA_002214785_00039 - 323 0.81 9.1 5.0 2 2 0.0002 0.46 10.0 1.6 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein THOC7 PF05615.13 132 pGCA_002214785_00039 - 323 3 8.1 11.6 1 2 0.00072 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pGCA_002214785_00039 - 323 3 8.1 11.6 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 DHR10 PF18595.1 117 pGCA_002214785_00039 - 323 5.7 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pGCA_002214785_00039 - 323 5.7 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain TrbL PF04610.14 215 pGCA_002214785_00040 - 332 2.8e-30 105.7 31.4 1 2 4.7e-34 2.8e-30 105.7 31.4 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pGCA_002214785_00040 - 332 2.8e-30 105.7 31.4 2 2 0.24 1.4e+03 -1.2 0.1 61 91 293 329 260 332 0.58 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pGCA_002214785_00040 - 332 0.16 11.8 1.2 1 2 0.16 9.4e+02 -0.3 0.1 35 67 67 105 60 118 0.65 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pGCA_002214785_00040 - 332 0.16 11.8 1.2 2 2 0.00011 0.68 9.8 0.1 28 81 238 288 209 301 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pGCA_002214785_00040 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pGCA_002214785_00041 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pGCA_002214785_00041 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pGCA_002214785_00042 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pGCA_002214785_00042 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pGCA_002214785_00043 - 295 2e-54 184.5 1.5 1 1 3.7e-58 3.3e-54 183.8 1.5 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pGCA_002214785_00043 - 295 0.072 12.9 0.5 1 2 1.8e-05 0.16 11.8 0.0 1 51 1 51 1 66 0.92 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pGCA_002214785_00043 - 295 0.072 12.9 0.5 2 2 1.1 9.7e+03 -3.7 0.1 50 62 130 142 124 149 0.68 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pGCA_002214785_00044 - 391 3.3e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pGCA_002214785_00044 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pGCA_002214785_00045 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pGCA_002214785_00045 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_002214785_00045 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pGCA_002214785_00045 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pGCA_002214785_00045 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pGCA_002214785_00045 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pGCA_002214785_00045 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pGCA_002214785_00045 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pGCA_002214785_00045 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pGCA_002214785_00045 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pGCA_002214785_00045 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pGCA_002214785_00045 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pGCA_002214785_00045 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pGCA_002214785_00045 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pGCA_002214785_00045 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pGCA_002214785_00045 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pGCA_002214785_00045 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pGCA_002214785_00045 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pGCA_002214785_00045 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pGCA_002214785_00045 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pGCA_002214785_00045 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pGCA_002214785_00045 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pGCA_002214785_00045 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pGCA_002214785_00045 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pGCA_002214785_00045 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pGCA_002214785_00045 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pGCA_002214785_00045 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pGCA_002214785_00045 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pGCA_002214785_00045 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pGCA_002214785_00045 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pGCA_002214785_00045 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pGCA_002214785_00045 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pGCA_002214785_00046 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_002214785_00046 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pGCA_002214785_00046 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_002214785_00046 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pGCA_002214785_00046 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pGCA_002214785_00047 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pGCA_002214785_00047 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pGCA_002214785_00047 - 145 0.08 12.7 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pGCA_002214785_00047 - 145 3.9 7.4 5.6 1 2 0.00081 3.6 7.5 2.3 36 49 29 42 2 47 0.91 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pGCA_002214785_00047 - 145 3.9 7.4 5.6 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pGCA_002214785_00048 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pGCA_002214785_00049 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pGCA_002214785_00049 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pGCA_002214785_00049 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pGCA_002214785_00049 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_002214785_00049 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_002214785_00049 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pGCA_002214785_00051 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pGCA_002214785_00051 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pGCA_002214785_00052 - 676 1.4e-97 327.4 8.2 1 1 6.3e-101 1.9e-97 326.9 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pGCA_002214785_00052 - 676 4.7e-12 46.0 3.1 1 2 1.8e-15 5.4e-12 45.8 0.1 2 101 3 132 2 134 0.90 Toprim domain Toprim PF01751.22 103 pGCA_002214785_00052 - 676 4.7e-12 46.0 3.1 2 2 1.3 3.8e+03 -1.8 0.6 77 77 520 520 476 566 0.60 Toprim domain zf-C4_Topoisom PF01396.19 39 pGCA_002214785_00052 - 676 0.05 13.4 2.1 1 1 4.7e-05 0.14 12.0 2.1 2 27 628 656 627 664 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pGCA_002214785_00052 - 676 0.05 13.9 0.7 1 2 2.9 8.5e+03 -2.9 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_002214785_00052 - 676 0.05 13.9 0.7 2 2 2.7e-05 0.079 13.2 0.0 18 35 624 641 614 641 0.76 zinc-ribbon EF-hand_8 PF13833.6 55 pGCA_002214785_00052 - 676 0.083 12.8 0.0 1 1 9.3e-05 0.28 11.1 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 pGCA_002214785_00052 - 676 0.34 11.1 3.3 1 3 0.59 1.8e+03 -0.8 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_002214785_00052 - 676 0.34 11.1 3.3 2 3 1.7 5.2e+03 -2.3 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_002214785_00052 - 676 0.34 11.1 3.3 3 3 0.00026 0.78 10.0 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain PcfJ PF14284.6 144 pGCA_002214785_00053 - 473 4.7e-05 23.3 2.2 1 1 1.3e-08 0.00012 22.0 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pGCA_002214785_00053 - 473 0.025 14.5 4.1 1 1 2e-05 0.18 11.7 4.1 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pGCA_002214785_00055 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pGCA_002214785_00055 - 639 3.4e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pGCA_002214785_00055 - 639 3.4e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pGCA_002214785_00055 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pGCA_002214785_00055 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pGCA_002214785_00055 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pGCA_002214785_00055 - 639 0.0015 18.9 0.0 1 1 2e-06 0.0036 17.6 0.0 4 58 266 314 264 318 0.81 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pGCA_002214785_00055 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pGCA_002214785_00055 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pGCA_002214785_00055 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 pGCA_002214785_00055 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B Rrp15p PF07890.12 134 pGCA_002214785_00057 - 65 0.41 11.0 7.3 1 1 0.00014 0.42 10.9 7.3 25 74 14 64 3 65 0.80 Rrp15p Oxysterol_BP PF01237.18 373 pGCA_002214785_00057 - 65 0.82 8.4 6.8 1 1 0.00028 0.84 8.4 6.8 311 349 26 63 5 64 0.82 Oxysterol-binding protein Asp4 PF16996.5 55 pGCA_002214785_00057 - 65 1.1 9.1 4.3 1 2 0.0003 0.9 9.4 2.6 9 30 18 39 13 44 0.91 Accessory secretory protein Sec Asp4 Asp4 PF16996.5 55 pGCA_002214785_00057 - 65 1.1 9.1 4.3 2 2 0.52 1.5e+03 -1.0 0.1 17 25 41 49 37 55 0.66 Accessory secretory protein Sec Asp4 Casc1_N PF15927.5 201 pGCA_002214785_00057 - 65 1.8 8.2 14.1 1 1 0.00072 2.1 8.0 14.1 3 35 20 52 18 62 0.83 Cancer susceptibility candidate 1 N-terminus Herpes_UL56 PF04534.12 197 pGCA_002214785_00057 - 65 2.6 7.5 9.7 1 1 0.0011 3.2 7.2 9.7 63 103 15 58 8 61 0.72 Herpesvirus UL56 protein Radial_spoke_3 PF06098.11 286 pGCA_002214785_00057 - 65 5.5 6.2 13.0 1 1 0.002 6 6.1 13.0 150 204 1 54 1 60 0.81 Radial spoke protein 3 CtsR_C PF17727.1 72 pGCA_002214785_00060 - 102 0.019 15.1 0.2 1 2 0.00017 3 8.0 0.0 3 38 31 66 27 73 0.86 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pGCA_002214785_00060 - 102 0.019 15.1 0.2 2 2 0.0014 24 5.1 0.0 28 49 74 95 71 101 0.84 CtsR C-terminal dimerization domain CagX PF03524.15 211 pGCA_002214785_00061 - 88 3.9e-08 33.3 0.0 1 1 5.9e-12 5.3e-08 32.8 0.0 162 210 8 60 2 61 0.90 Conjugal transfer protein RSV_NS2 PF03113.14 124 pGCA_002214785_00061 - 88 0.047 13.7 0.0 1 1 6.5e-06 0.058 13.4 0.0 64 114 7 57 3 67 0.88 Respiratory synctial virus non-structural protein NS2 TrbH PF07283.11 119 pGCA_002214785_00062 - 145 7.2e-05 23.0 0.0 1 1 1.1e-08 0.0001 22.5 0.0 2 52 36 87 35 127 0.84 Conjugal transfer protein TrbH PDZ_3 PF17815.1 145 pGCA_002214785_00062 - 145 0.043 13.7 0.1 1 1 8e-06 0.071 13.0 0.1 26 89 76 138 69 141 0.88 PDZ domain TrbI PF03743.14 187 pGCA_002214785_00063 - 409 3.7e-59 199.7 1.0 1 2 0.57 1.1e+03 -0.8 1.4 121 168 52 94 29 108 0.65 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pGCA_002214785_00063 - 409 3.7e-59 199.7 1.0 2 2 1.9e-62 3.7e-59 199.7 1.0 2 186 222 402 221 403 0.95 Bacterial conjugation TrbI-like protein Chordopox_A13L PF05961.11 69 pGCA_002214785_00063 - 409 0.0031 17.7 0.2 1 1 4.7e-06 0.0094 16.2 0.2 4 57 24 81 22 86 0.72 Chordopoxvirus A13L protein Shisa PF13908.6 190 pGCA_002214785_00063 - 409 0.019 15.2 2.7 1 1 2.1e-05 0.041 14.1 2.7 83 181 21 119 3 126 0.71 Wnt and FGF inhibitory regulator EphA2_TM PF14575.6 78 pGCA_002214785_00063 - 409 0.085 13.7 0.1 1 2 0.00018 0.36 11.7 0.1 5 58 26 76 22 81 0.44 Ephrin type-A receptor 2 transmembrane domain EphA2_TM PF14575.6 78 pGCA_002214785_00063 - 409 0.085 13.7 0.1 2 2 3.1 6.3e+03 -1.9 0.0 6 36 326 356 325 386 0.66 Ephrin type-A receptor 2 transmembrane domain O-antigen_lig PF13425.6 468 pGCA_002214785_00063 - 409 0.13 11.0 4.9 1 1 0.0001 0.2 10.4 4.9 238 348 15 137 10 153 0.54 O-antigen ligase like membrane protein Fic_N PF13784.6 82 pGCA_002214785_00063 - 409 0.16 12.1 0.9 1 1 0.00016 0.31 11.1 0.9 29 71 55 95 42 105 0.82 Fic/DOC family N-terminal DUF4446 PF14584.6 150 pGCA_002214785_00063 - 409 0.38 10.7 4.1 1 2 4.3e-05 0.086 12.8 0.8 2 67 24 90 23 109 0.68 Protein of unknown function (DUF4446) DUF4446 PF14584.6 150 pGCA_002214785_00063 - 409 0.38 10.7 4.1 2 2 5.4 1.1e+04 -3.7 0.1 41 57 354 370 343 379 0.48 Protein of unknown function (DUF4446) TssO PF17561.2 148 pGCA_002214785_00063 - 409 0.43 10.7 6.0 1 2 0.00016 0.31 11.1 4.1 3 92 14 109 12 142 0.69 Type VI secretion system, TssO TssO PF17561.2 148 pGCA_002214785_00063 - 409 0.43 10.7 6.0 2 2 3.4 6.9e+03 -3.0 0.0 17 43 331 355 323 379 0.46 Type VI secretion system, TssO FlgT_N PF16548.5 87 pGCA_002214785_00063 - 409 2.3 8.8 7.7 1 2 0.12 2.3e+02 2.4 2.3 24 62 51 88 42 108 0.70 Flagellar assembly protein T, N-terminal domain FlgT_N PF16548.5 87 pGCA_002214785_00063 - 409 2.3 8.8 7.7 2 2 0.0012 2.3 8.8 0.3 16 44 349 378 337 386 0.72 Flagellar assembly protein T, N-terminal domain SLT PF01464.20 117 pGCA_002214785_00064 - 181 2.9e-19 68.8 1.5 1 2 5e-23 4.5e-19 68.2 0.9 5 113 8 147 5 151 0.90 Transglycosylase SLT domain SLT PF01464.20 117 pGCA_002214785_00064 - 181 2.9e-19 68.8 1.5 2 2 0.19 1.7e+03 -1.4 0.0 73 96 149 172 146 180 0.69 Transglycosylase SLT domain TraH_2 PF06871.11 207 pGCA_002214785_00064 - 181 7.2e-10 38.9 0.0 1 1 8.8e-14 7.9e-10 38.7 0.0 1 112 1 111 1 167 0.85 TraH_2 SSB PF00436.25 104 pGCA_002214785_00066 - 120 1.4e-18 66.8 0.0 1 1 9.6e-23 1.7e-18 66.5 0.0 1 103 2 98 2 99 0.96 Single-strand binding protein family MPTase-PolyVal PF18818.1 126 pGCA_002214785_00068 - 737 3.5e-43 146.7 0.7 1 2 1.5e-46 5.5e-43 146.0 0.0 2 125 157 280 156 281 0.98 Metallopeptidase superfamily domain MPTase-PolyVal PF18818.1 126 pGCA_002214785_00068 - 737 3.5e-43 146.7 0.7 2 2 2.7 9.6e+03 -3.4 0.2 72 100 465 493 450 503 0.60 Metallopeptidase superfamily domain DUF1738 PF08401.11 128 pGCA_002214785_00068 - 737 4.5e-31 107.6 1.4 1 3 1.2e-34 4.5e-31 107.6 1.4 2 118 6 118 5 131 0.87 Domain of unknown function (DUF1738) DUF1738 PF08401.11 128 pGCA_002214785_00068 - 737 4.5e-31 107.6 1.4 2 3 2.2 8e+03 -3.1 0.2 101 117 297 313 280 327 0.46 Domain of unknown function (DUF1738) DUF1738 PF08401.11 128 pGCA_002214785_00068 - 737 4.5e-31 107.6 1.4 3 3 2.7 9.5e+03 -3.4 0.5 106 117 463 474 443 498 0.50 Domain of unknown function (DUF1738) Toprim_3 PF13362.6 95 pGCA_002214785_00068 - 737 2.3e-08 34.3 0.0 1 2 3.3 1.2e+04 -3.3 0.0 57 76 482 501 472 518 0.62 Toprim domain Toprim_3 PF13362.6 95 pGCA_002214785_00068 - 737 2.3e-08 34.3 0.0 2 2 2.3e-11 8.3e-08 32.5 0.0 2 93 586 691 585 693 0.82 Toprim domain DUF1816 PF08846.10 65 pGCA_002214785_00068 - 737 0.052 13.6 1.5 1 3 0.19 6.9e+02 0.4 0.0 43 63 67 87 47 88 0.74 Domain of unknown function (DUF1816) DUF1816 PF08846.10 65 pGCA_002214785_00068 - 737 0.052 13.6 1.5 2 3 0.0032 11 6.1 0.5 9 64 264 313 257 313 0.78 Domain of unknown function (DUF1816) DUF1816 PF08846.10 65 pGCA_002214785_00068 - 737 0.052 13.6 1.5 3 3 0.048 1.7e+02 2.3 0.0 19 37 324 342 320 347 0.86 Domain of unknown function (DUF1816) EpmC PF04315.12 163 pGCA_002214785_00068 - 737 0.31 10.7 0.0 1 3 8.5e-05 0.31 10.7 0.0 35 57 193 213 159 226 0.72 Elongation factor P hydroxylase EpmC PF04315.12 163 pGCA_002214785_00068 - 737 0.31 10.7 0.0 2 3 1.4 4.9e+03 -2.9 0.1 67 78 350 361 345 368 0.79 Elongation factor P hydroxylase EpmC PF04315.12 163 pGCA_002214785_00068 - 737 0.31 10.7 0.0 3 3 0.34 1.2e+03 -0.9 0.4 107 157 445 497 438 502 0.71 Elongation factor P hydroxylase T4SS-DNA_transf PF02534.14 469 pGCA_002214785_00069 - 607 5.2e-98 328.9 0.1 1 1 1.3e-101 7.8e-98 328.3 0.1 10 459 110 598 101 605 0.85 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_002214785_00069 - 607 1.1e-25 90.0 0.3 1 2 1.1 6.4e+03 -2.9 0.1 64 83 331 351 303 355 0.60 TraM recognition site of TraD and TraG TraG-D_C PF12696.7 126 pGCA_002214785_00069 - 607 1.1e-25 90.0 0.3 2 2 3.4e-29 2e-25 89.2 0.0 2 125 432 552 431 553 0.93 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pGCA_002214785_00069 - 607 5.6e-20 71.6 0.0 1 2 0.012 73 2.1 0.0 16 85 151 226 140 280 0.69 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_002214785_00069 - 607 5.6e-20 71.6 0.0 2 2 1.9e-22 1.1e-18 67.3 0.0 122 368 295 554 291 556 0.84 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.23 128 pGCA_002214785_00070 - 239 1.8e-08 34.5 0.1 1 1 1.8e-11 2.3e-08 34.1 0.1 3 100 7 178 5 206 0.71 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 177 pGCA_002214785_00070 - 239 9.7e-05 22.3 0.1 1 1 1.5e-07 0.00019 21.4 0.1 3 62 4 59 2 118 0.67 AAA domain ParA PF10609.9 246 pGCA_002214785_00070 - 239 0.00041 19.9 0.0 1 1 4.8e-07 0.00062 19.3 0.0 4 45 3 41 1 63 0.85 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 305 pGCA_002214785_00070 - 239 0.00077 18.7 0.0 1 1 1.2e-06 0.0016 17.7 0.0 4 40 6 42 3 74 0.93 Anion-transporting ATPase Fer4_NifH PF00142.18 271 pGCA_002214785_00070 - 239 0.00082 18.9 0.0 1 1 1.1e-06 0.0015 18.1 0.0 4 67 7 68 4 89 0.76 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLP1_P PF16575.5 188 pGCA_002214785_00070 - 239 0.006 16.4 0.1 1 2 2.1e-05 0.026 14.3 0.1 1 35 10 44 10 52 0.91 mRNA cleavage and polyadenylation factor CLP1 P-loop CLP1_P PF16575.5 188 pGCA_002214785_00070 - 239 0.006 16.4 0.1 2 2 0.84 1.1e+03 -0.7 0.0 122 151 137 165 131 180 0.74 mRNA cleavage and polyadenylation factor CLP1 P-loop CBP_BcsQ PF06564.12 234 pGCA_002214785_00070 - 239 0.045 13.2 0.0 1 1 6.8e-05 0.087 12.3 0.0 7 46 9 47 4 58 0.88 Cellulose biosynthesis protein BcsQ DUF1647 PF07801.11 141 pGCA_002214785_00070 - 239 0.046 13.5 0.5 1 2 0.0046 5.9 6.6 0.0 64 133 18 86 15 90 0.85 Protein of unknown function (DUF1647) DUF1647 PF07801.11 141 pGCA_002214785_00070 - 239 0.046 13.5 0.5 2 2 0.015 19 5.0 0.1 25 76 140 196 135 230 0.77 Protein of unknown function (DUF1647) MipZ PF09140.11 262 pGCA_002214785_00070 - 239 0.063 12.6 0.0 1 1 7.5e-05 0.096 12.0 0.0 5 44 7 46 3 58 0.90 ATPase MipZ NYN PF01936.18 147 pGCA_002214785_00070 - 239 0.088 13.3 0.1 1 1 0.00013 0.16 12.4 0.1 74 119 61 106 32 117 0.84 NYN domain Epimerase PF01370.21 241 pGCA_002214785_00070 - 239 0.11 11.9 0.0 1 1 0.00014 0.18 11.2 0.0 8 119 17 119 14 147 0.76 NAD dependent epimerase/dehydratase family FIST PF08495.10 172 pGCA_002214785_00070 - 239 0.14 12.2 0.0 1 1 0.00014 0.18 11.8 0.0 69 115 71 139 10 167 0.57 FIST N domain DUF87 PF01935.17 227 pGCA_002214785_00070 - 239 0.18 11.9 2.7 1 1 0.00068 0.87 9.6 2.7 25 61 5 40 1 231 0.83 Helicase HerA, central domain AAA_14 PF13173.6 131 pGCA_002214785_00070 - 239 0.2 11.7 1.7 1 2 0.0003 0.39 10.8 0.1 6 90 7 91 3 122 0.71 AAA domain AAA_14 PF13173.6 131 pGCA_002214785_00070 - 239 0.2 11.7 1.7 2 2 0.71 9.1e+02 -0.1 0.2 21 47 173 196 161 229 0.69 AAA domain Fic PF02661.18 97 pGCA_002214785_00072 - 227 1.1e-15 58.2 0.2 1 1 1.2e-19 2.2e-15 57.3 0.2 2 96 60 169 59 170 0.88 Fic/DOC family Peptidase_S26 PF10502.9 138 pGCA_002214785_00073 - 155 1.4e-20 73.5 0.0 1 1 1.5e-23 1.3e-19 70.3 0.0 2 125 29 140 28 153 0.93 Signal peptidase, peptidase S26 Peptidase_S24 PF00717.23 70 pGCA_002214785_00073 - 155 0.032 14.2 0.1 1 1 6.9e-06 0.062 13.3 0.1 26 58 50 82 43 95 0.85 Peptidase S24-like Endonuclease_NS PF01223.23 226 pGCA_002214785_00074 - 213 1.2e-29 103.7 2.6 1 1 7.5e-34 1.3e-29 103.6 2.6 6 206 27 210 22 213 0.89 DNA/RNA non-specific endonuclease Activator-TraM PF11657.8 142 pGCA_002214785_00075 - 131 4.8e-05 23.2 4.1 1 1 3.3e-08 0.00012 22.0 4.2 6 104 5 108 2 119 0.70 Transcriptional activator TraM EssA PF10661.9 148 pGCA_002214785_00075 - 131 0.0043 16.9 3.6 1 2 2.5 9e+03 -3.6 0.2 49 60 4 15 3 24 0.67 WXG100 protein secretion system (Wss), protein EssA EssA PF10661.9 148 pGCA_002214785_00075 - 131 0.0043 16.9 3.6 2 2 1.2e-06 0.0043 16.9 3.6 49 141 36 127 28 130 0.73 WXG100 protein secretion system (Wss), protein EssA DUF2951 PF11166.8 98 pGCA_002214785_00075 - 131 0.0078 16.4 3.7 1 1 2.4e-06 0.0085 16.3 2.7 23 88 57 123 38 130 0.64 Protein of unknown function (DUF2951) DUF2207 PF09972.9 492 pGCA_002214785_00075 - 131 0.015 14.1 2.1 1 1 5e-06 0.018 13.8 2.1 322 400 35 128 3 131 0.60 Predicted membrane protein (DUF2207) ETRAMP PF09716.10 83 pGCA_002214785_00075 - 131 0.29 11.2 3.5 1 1 0.00012 0.43 10.7 3.5 36 77 90 131 2 131 0.82 Malarial early transcribed membrane protein (ETRAMP) AAA_31 PF13614.6 177 pGCA_002214785_00076 - 228 4e-23 82.2 2.7 1 3 3.9e-18 3.3e-15 56.4 0.1 3 51 2 50 1 61 0.88 AAA domain AAA_31 PF13614.6 177 pGCA_002214785_00076 - 228 4e-23 82.2 2.7 2 3 7.8e-09 6.6e-06 26.1 0.2 93 175 55 136 45 138 0.90 AAA domain AAA_31 PF13614.6 177 pGCA_002214785_00076 - 228 4e-23 82.2 2.7 3 3 2.8 2.4e+03 -1.7 0.0 155 170 153 168 140 200 0.66 AAA domain CbiA PF01656.23 128 pGCA_002214785_00076 - 228 9e-17 61.3 0.2 1 1 1.5e-19 1.3e-16 60.8 0.2 1 126 3 195 3 197 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 262 pGCA_002214785_00076 - 228 5.4e-13 48.8 0.5 1 3 2.2e-09 1.9e-06 27.4 0.0 2 51 2 50 1 56 0.86 ATPase MipZ MipZ PF09140.11 262 pGCA_002214785_00076 - 228 5.4e-13 48.8 0.5 2 3 1.3e-06 0.0011 18.3 0.1 80 141 60 121 48 133 0.87 ATPase MipZ MipZ PF09140.11 262 pGCA_002214785_00076 - 228 5.4e-13 48.8 0.5 3 3 0.39 3.3e+02 0.3 0.0 127 175 130 178 122 205 0.77 ATPase MipZ VirC1 PF07015.11 231 pGCA_002214785_00076 - 228 4.2e-10 39.3 0.1 1 1 9.1e-13 7.8e-10 38.4 0.1 4 150 3 145 1 204 0.74 VirC1 protein ArsA_ATPase PF02374.15 305 pGCA_002214785_00076 - 228 8.7e-08 31.7 0.7 1 1 1.5e-10 1.3e-07 31.1 0.7 5 113 5 116 1 222 0.79 Anion-transporting ATPase ParA PF10609.9 246 pGCA_002214785_00076 - 228 2.7e-06 27.0 0.0 1 1 5.5e-09 4.7e-06 26.2 0.0 5 41 2 38 1 56 0.96 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 271 pGCA_002214785_00076 - 228 7.3e-06 25.6 0.2 1 2 3.2e-08 2.7e-05 23.8 0.0 6 48 7 47 2 92 0.74 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_NifH PF00142.18 271 pGCA_002214785_00076 - 228 7.3e-06 25.6 0.2 2 2 1.1 9.2e+02 -0.9 0.0 69 215 176 182 136 224 0.53 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 196 pGCA_002214785_00076 - 228 1.3e-05 24.9 0.1 1 2 4.3e-08 3.7e-05 23.5 0.0 11 99 11 95 2 124 0.82 SRP54-type protein, GTPase domain SRP54 PF00448.22 196 pGCA_002214785_00076 - 228 1.3e-05 24.9 0.1 2 2 4.2 3.6e+03 -2.6 0.0 101 116 151 166 144 191 0.62 SRP54-type protein, GTPase domain CBP_BcsQ PF06564.12 234 pGCA_002214785_00076 - 228 6.3e-05 22.6 0.0 1 2 7.2e-07 0.00061 19.3 0.0 10 42 9 41 1 54 0.86 Cellulose biosynthesis protein BcsQ CBP_BcsQ PF06564.12 234 pGCA_002214785_00076 - 228 6.3e-05 22.6 0.0 2 2 0.27 2.3e+02 1.1 0.0 103 142 67 106 46 133 0.79 Cellulose biosynthesis protein BcsQ CLP1_P PF16575.5 188 pGCA_002214785_00076 - 228 0.0012 18.7 0.1 1 1 3.6e-06 0.003 17.4 0.1 4 35 11 42 8 67 0.91 mRNA cleavage and polyadenylation factor CLP1 P-loop MobB PF03205.14 133 pGCA_002214785_00076 - 228 0.0018 18.2 0.0 1 2 0.0019 1.6 8.6 0.0 3 34 4 36 2 45 0.79 Molybdopterin guanine dinucleotide synthesis protein B MobB PF03205.14 133 pGCA_002214785_00076 - 228 0.0018 18.2 0.0 2 2 0.0044 3.8 7.4 0.0 27 59 70 102 53 141 0.74 Molybdopterin guanine dinucleotide synthesis protein B Thymidylate_kin PF02223.17 185 pGCA_002214785_00076 - 228 0.008 15.9 0.2 1 2 0.00029 0.25 11.0 0.0 6 45 11 52 10 62 0.78 Thymidylate kinase Thymidylate_kin PF02223.17 185 pGCA_002214785_00076 - 228 0.008 15.9 0.2 2 2 0.11 94 2.6 0.3 131 168 186 225 155 228 0.74 Thymidylate kinase AAA_24 PF13479.6 197 pGCA_002214785_00076 - 228 0.013 15.2 0.2 1 2 3.3e-05 0.028 14.2 0.0 11 74 10 88 6 131 0.72 AAA domain AAA_24 PF13479.6 197 pGCA_002214785_00076 - 228 0.013 15.2 0.2 2 2 4.5 3.8e+03 -2.6 0.0 48 48 193 193 151 216 0.53 AAA domain AAA_14 PF13173.6 131 pGCA_002214785_00076 - 228 0.015 15.4 0.4 1 2 6.7e-05 0.057 13.5 0.0 13 83 12 83 10 110 0.73 AAA domain AAA_14 PF13173.6 131 pGCA_002214785_00076 - 228 0.015 15.4 0.4 2 2 2.2 1.9e+03 -1.1 0.2 38 59 200 221 176 226 0.66 AAA domain AAA_18 PF13238.6 130 pGCA_002214785_00076 - 228 0.02 15.4 1.0 1 2 0.00013 0.11 13.0 0.0 8 28 11 32 9 129 0.64 AAA domain AAA_18 PF13238.6 130 pGCA_002214785_00076 - 228 0.02 15.4 1.0 2 2 1.1 9.1e+02 0.4 0.2 15 67 152 214 149 225 0.66 AAA domain Zeta_toxin PF06414.12 199 pGCA_002214785_00076 - 228 0.026 13.8 0.1 1 2 0.00026 0.22 10.8 0.0 25 55 10 41 3 98 0.89 Zeta toxin Zeta_toxin PF06414.12 199 pGCA_002214785_00076 - 228 0.026 13.8 0.1 2 2 0.26 2.3e+02 0.9 0.0 151 184 143 176 131 200 0.83 Zeta toxin AAA_25 PF13481.6 194 pGCA_002214785_00076 - 228 0.059 12.9 0.0 1 1 0.00013 0.11 12.0 0.0 42 64 10 33 4 56 0.84 AAA domain APS_kinase PF01583.20 158 pGCA_002214785_00076 - 228 0.066 13.1 0.0 1 1 0.0002 0.17 11.7 0.0 11 39 10 38 4 50 0.92 Adenylylsulphate kinase DUF87 PF01935.17 227 pGCA_002214785_00076 - 228 0.082 13.0 1.4 1 2 0.0012 1.1 9.4 0.0 33 60 11 37 9 39 0.94 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_002214785_00076 - 228 0.082 13.0 1.4 2 2 0.14 1.2e+02 2.6 0.4 46 145 72 183 63 225 0.59 Helicase HerA, central domain AAA_33 PF13671.6 143 pGCA_002214785_00076 - 228 0.083 13.1 0.0 1 1 0.00018 0.16 12.2 0.0 9 87 11 97 9 103 0.69 AAA domain MeaB PF03308.16 267 pGCA_002214785_00076 - 228 0.16 10.9 0.1 1 1 0.00078 0.66 8.9 0.1 39 70 11 42 5 133 0.93 Methylmalonyl Co-A mutase-associated GTPase MeaB RHH_7 PF16777.5 74 pGCA_002214785_00077 - 74 0.0056 17.0 0.8 1 1 3.7e-07 0.0066 16.8 0.8 21 65 29 70 5 73 0.65 Transcriptional regulator, RHH-like, CopG Acetyltransf_7 PF13508.7 76 pGCA_002214785_00079 - 184 6.9e-10 39.2 0.2 1 1 4.7e-13 1.2e-09 38.4 0.2 24 76 96 161 63 161 0.63 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 pGCA_002214785_00079 - 184 7.7e-10 38.8 0.5 1 1 4.9e-13 1.3e-09 38.1 0.5 52 126 101 180 46 181 0.90 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pGCA_002214785_00079 - 184 1e-09 38.7 0.1 1 1 5.1e-13 1.3e-09 38.3 0.1 34 117 66 159 26 159 0.78 Acetyltransferase (GNAT) family FR47 PF08445.10 86 pGCA_002214785_00079 - 184 2.5e-05 24.1 0.0 1 1 2.7e-08 6.8e-05 22.8 0.0 20 80 103 162 99 169 0.77 FR47-like protein Acetyltransf_4 PF13420.7 155 pGCA_002214785_00079 - 184 0.0026 17.9 2.0 1 1 2.1e-06 0.0054 16.9 2.0 82 142 110 167 88 176 0.82 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 pGCA_002214785_00079 - 184 0.0068 17.1 0.0 1 1 3.3e-06 0.0085 16.8 0.0 80 138 101 160 27 160 0.82 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 210 pGCA_002214785_00079 - 184 0.99 8.8 15.5 1 1 0.0027 6.9 6.1 15.5 44 151 74 174 1 184 0.72 Putative acetyl-transferase Relaxase PF03432.14 242 pGCA_002214785_00081 - 719 7.4e-37 127.3 19.2 1 4 8.2e-41 7.4e-37 127.3 19.2 1 241 12 269 12 270 0.88 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_002214785_00081 - 719 7.4e-37 127.3 19.2 2 4 2 1.8e+04 -9.5 13.0 144 217 277 354 268 405 0.50 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_002214785_00081 - 719 7.4e-37 127.3 19.2 3 4 0.032 2.9e+02 0.9 1.7 128 172 480 548 471 587 0.50 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_002214785_00081 - 719 7.4e-37 127.3 19.2 4 4 0.42 3.8e+03 -2.8 3.8 108 213 598 698 596 714 0.53 Relaxase/Mobilisation nuclease domain LPD7 PF18821.1 94 pGCA_002214785_00081 - 719 6.3e-12 45.5 0.0 1 1 3.1e-15 2.8e-11 43.4 0.0 7 91 422 509 415 512 0.89 Large polyvalent protein-associated domain 7 DUF3452 PF11934.8 137 pGCA_002214785_00083 - 107 0.013 15.0 3.8 1 1 9e-07 0.016 14.8 3.8 23 89 8 77 4 95 0.77 Domain of unknown function (DUF3452) PIN PF01850.21 122 pGCA_002214785_00087 - 137 8.4e-16 58.6 0.1 1 1 2.3e-19 1e-15 58.3 0.1 1 119 4 125 4 127 0.94 PIN domain PIN_3 PF13470.6 116 pGCA_002214785_00087 - 137 0.00016 22.4 0.0 1 1 4.2e-08 0.00019 22.2 0.0 1 53 3 58 3 121 0.70 PIN domain PIN_12 PF16289.5 171 pGCA_002214785_00087 - 137 0.00093 19.7 4.4 1 1 2.1e-07 0.00093 19.7 4.4 1 39 4 43 4 115 0.82 PIN domain DHHA2 PF02833.14 143 pGCA_002214785_00087 - 137 0.17 12.0 0.0 1 2 0.36 1.6e+03 -0.8 0.0 29 51 34 56 22 73 0.68 DHHA2 domain DHHA2 PF02833.14 143 pGCA_002214785_00087 - 137 0.17 12.0 0.0 2 2 0.00013 0.57 10.4 0.0 24 67 72 110 65 124 0.83 DHHA2 domain T2SSE PF00437.20 273 pGCA_002214785_00088 - 312 4.3e-76 255.6 0.2 1 1 9.3e-79 5.4e-76 255.2 0.2 8 270 24 285 21 288 0.98 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.18 243 pGCA_002214785_00088 - 312 2.2e-05 23.9 0.0 1 2 2.2 1.3e+03 -1.5 0.0 134 159 6 31 2 40 0.81 FtsK/SpoIIIE family FtsK_SpoIIIE PF01580.18 243 pGCA_002214785_00088 - 312 2.2e-05 23.9 0.0 2 2 1.7e-07 9.9e-05 21.8 0.0 30 63 134 167 118 202 0.79 FtsK/SpoIIIE family DEAD PF00270.29 176 pGCA_002214785_00088 - 312 4.3e-05 23.4 0.0 1 1 1.2e-07 7.1e-05 22.6 0.0 1 70 129 196 129 241 0.78 DEAD/DEAH box helicase TrwB_AAD_bind PF10412.9 386 pGCA_002214785_00088 - 312 0.00015 20.8 0.3 1 2 6.9e-07 0.0004 19.4 0.1 10 53 138 183 132 200 0.84 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_002214785_00088 - 312 0.00015 20.8 0.3 2 2 2 1.2e+03 -1.9 0.0 28 54 200 226 195 230 0.84 Type IV secretion-system coupling protein DNA-binding domain ABC_ATPase PF09818.9 448 pGCA_002214785_00088 - 312 0.00025 20.0 0.1 1 1 6.6e-07 0.00038 19.4 0.1 218 301 116 199 105 208 0.88 Predicted ATPase of the ABC class ResIII PF04851.15 171 pGCA_002214785_00088 - 312 0.00042 20.4 0.0 1 1 1.1e-06 0.00062 19.8 0.0 4 67 128 186 125 295 0.88 Type III restriction enzyme, res subunit DUF87 PF01935.17 227 pGCA_002214785_00088 - 312 0.00069 19.8 0.0 1 1 2.3e-06 0.0013 18.8 0.0 24 58 144 179 121 216 0.89 Helicase HerA, central domain IstB_IS21 PF01695.17 178 pGCA_002214785_00088 - 312 0.00078 19.2 0.0 1 1 2.5e-06 0.0015 18.3 0.0 23 111 121 206 110 209 0.73 IstB-like ATP binding protein AAA_19 PF13245.6 146 pGCA_002214785_00088 - 312 0.00091 19.6 0.3 1 1 4e-06 0.0023 18.3 0.3 7 77 140 251 132 305 0.61 AAA domain AAA_7 PF12775.7 181 pGCA_002214785_00088 - 312 0.0034 16.9 0.1 1 1 1.5e-05 0.0087 15.6 0.1 25 58 135 168 125 202 0.79 P-loop containing dynein motor region ATPase PF06745.13 231 pGCA_002214785_00088 - 312 0.0041 16.5 0.0 1 1 1.5e-05 0.0086 15.5 0.0 12 45 136 168 114 193 0.78 KaiC AAA_30 PF13604.6 192 pGCA_002214785_00088 - 312 0.0081 15.9 0.0 1 1 2.4e-05 0.014 15.1 0.0 2 45 128 170 127 229 0.78 AAA domain NACHT PF05729.12 166 pGCA_002214785_00088 - 312 0.016 15.1 0.0 1 1 6.7e-05 0.039 13.9 0.0 3 48 146 188 144 201 0.83 NACHT domain ABC_tran PF00005.27 137 pGCA_002214785_00088 - 312 0.021 15.4 0.4 1 1 0.00013 0.073 13.6 0.3 8 34 140 166 136 182 0.87 ABC transporter Sigma54_activat PF00158.26 168 pGCA_002214785_00088 - 312 0.029 14.1 0.0 1 1 9.7e-05 0.056 13.1 0.0 13 45 134 166 124 198 0.75 Sigma-54 interaction domain AAA_29 PF13555.6 61 pGCA_002214785_00088 - 312 0.029 14.1 1.6 1 2 8.7 5e+03 -2.7 0.2 36 42 69 75 63 78 0.71 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pGCA_002214785_00088 - 312 0.029 14.1 1.6 2 2 5.6e-05 0.032 14.0 0.1 19 42 140 163 132 174 0.83 P-loop containing region of AAA domain Zeta_toxin PF06414.12 199 pGCA_002214785_00088 - 312 0.03 13.6 0.0 1 1 0.0001 0.058 12.7 0.0 17 51 144 180 130 211 0.80 Zeta toxin PhoH PF02562.16 205 pGCA_002214785_00088 - 312 0.03 13.8 0.0 1 1 0.00012 0.072 12.5 0.0 5 39 128 163 125 203 0.75 PhoH-like protein MMR_HSR1 PF01926.23 114 pGCA_002214785_00088 - 312 0.033 14.3 0.3 1 2 0.00023 0.13 12.3 0.1 2 27 146 171 145 196 0.86 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 pGCA_002214785_00088 - 312 0.033 14.3 0.3 2 2 3.1 1.8e+03 -1.0 0.0 76 100 278 299 243 310 0.52 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 167 pGCA_002214785_00088 - 312 0.033 14.1 0.5 1 2 0.00023 0.13 12.1 0.0 84 122 127 166 108 182 0.83 RsgA GTPase RsgA_GTPase PF03193.16 167 pGCA_002214785_00088 - 312 0.033 14.1 0.5 2 2 1.9 1.1e+03 -0.6 0.1 58 97 261 300 255 306 0.73 RsgA GTPase AAA_24 PF13479.6 197 pGCA_002214785_00088 - 312 0.034 13.9 0.1 1 2 0.001 0.6 9.8 0.0 3 22 144 163 142 192 0.83 AAA domain AAA_24 PF13479.6 197 pGCA_002214785_00088 - 312 0.034 13.9 0.1 2 2 0.29 1.7e+02 1.8 0.0 145 180 255 291 233 309 0.72 AAA domain TsaE PF02367.17 125 pGCA_002214785_00088 - 312 0.035 14.1 0.1 1 1 0.00017 0.097 12.7 0.0 13 43 139 167 124 177 0.77 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 170 pGCA_002214785_00088 - 312 0.04 14.3 0.0 1 2 4.2 2.4e+03 -1.3 0.0 93 137 38 82 6 86 0.70 AAA ATPase domain AAA_16 PF13191.6 170 pGCA_002214785_00088 - 312 0.04 14.3 0.0 2 2 0.00025 0.14 12.5 0.0 25 89 144 227 133 285 0.56 AAA ATPase domain RNA_helicase PF00910.22 107 pGCA_002214785_00088 - 312 0.044 14.2 0.0 1 2 1.6 9.1e+02 0.3 0.0 36 73 33 68 8 82 0.73 RNA helicase RNA_helicase PF00910.22 107 pGCA_002214785_00088 - 312 0.044 14.2 0.0 2 2 0.00084 0.49 10.8 0.0 1 24 146 169 146 198 0.82 RNA helicase G-alpha PF00503.20 354 pGCA_002214785_00088 - 312 0.047 12.9 0.1 1 1 0.00011 0.062 12.5 0.1 21 80 141 200 120 307 0.69 G-protein alpha subunit ATP_bind_1 PF03029.17 241 pGCA_002214785_00088 - 312 0.056 13.2 0.3 1 2 0.00036 0.21 11.4 0.0 1 23 148 170 148 188 0.82 Conserved hypothetical ATP binding protein ATP_bind_1 PF03029.17 241 pGCA_002214785_00088 - 312 0.056 13.2 0.3 2 2 2 1.2e+03 -0.9 0.1 198 238 264 303 249 306 0.70 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.27 194 pGCA_002214785_00088 - 312 0.1 12.1 0.8 1 2 0.001 0.59 9.6 0.1 3 34 143 174 141 210 0.86 Elongation factor Tu GTP binding domain GTP_EFTU PF00009.27 194 pGCA_002214785_00088 - 312 0.1 12.1 0.8 2 2 0.66 3.8e+02 0.5 0.1 108 132 263 287 243 306 0.80 Elongation factor Tu GTP binding domain Pox_A32 PF04665.12 242 pGCA_002214785_00088 - 312 0.13 11.7 0.2 1 3 0.00022 0.13 11.7 0.2 11 37 141 167 133 179 0.83 Poxvirus A32 protein Pox_A32 PF04665.12 242 pGCA_002214785_00088 - 312 0.13 11.7 0.2 2 3 2.2 1.3e+03 -1.4 0.0 192 218 173 201 163 210 0.72 Poxvirus A32 protein Pox_A32 PF04665.12 242 pGCA_002214785_00088 - 312 0.13 11.7 0.2 3 3 3.4 2e+03 -2.0 0.2 163 198 259 297 246 309 0.56 Poxvirus A32 protein AAA_22 PF13401.6 137 pGCA_002214785_00088 - 312 0.13 12.5 0.0 1 1 0.00049 0.28 11.4 0.0 4 29 142 167 138 220 0.79 AAA domain UvrD-helicase PF00580.21 315 pGCA_002214785_00088 - 312 0.13 11.7 0.5 1 1 0.00034 0.19 11.2 0.4 8 28 139 158 128 248 0.84 UvrD/REP helicase N-terminal domain AAA_23 PF13476.6 200 pGCA_002214785_00088 - 312 0.56 10.7 5.0 1 2 2.3 1.3e+03 -0.3 0.1 149 162 59 72 4 147 0.45 AAA domain AAA_23 PF13476.6 200 pGCA_002214785_00088 - 312 0.56 10.7 5.0 2 2 0.00066 0.38 11.2 2.6 22 41 146 165 132 307 0.91 AAA domain TrbC PF04956.13 99 pGCA_002214785_00089 - 98 3.5e-18 65.6 9.3 1 1 6.5e-22 3.9e-18 65.5 9.3 16 99 4 91 1 91 0.94 TrbC/VIRB2 family E1-E2_ATPase PF00122.20 181 pGCA_002214785_00089 - 98 0.046 13.3 1.0 1 1 8.7e-06 0.052 13.1 1.0 107 156 27 82 13 97 0.75 E1-E2 ATPase Clavanin PF05452.11 80 pGCA_002214785_00089 - 98 0.3 11.3 2.5 1 2 0.00086 5.1 7.4 0.1 1 19 1 19 1 54 0.83 Clavanin Clavanin PF05452.11 80 pGCA_002214785_00089 - 98 0.3 11.3 2.5 2 2 0.0073 44 4.4 0.4 1 20 68 87 68 92 0.90 Clavanin VirB3 PF05101.13 84 pGCA_002214785_00090 - 95 3.4e-16 59.2 0.5 1 1 4.3e-20 3.8e-16 59.1 0.5 2 83 6 85 5 87 0.88 Type IV secretory pathway, VirB3-like protein CytB6-F_Fe-S PF08802.10 39 pGCA_002214785_00090 - 95 0.13 12.3 0.7 1 1 2.7e-05 0.24 11.5 0.7 21 36 41 56 35 58 0.91 Cytochrome B6-F complex Fe-S subunit CagE_TrbE_VirB PF03135.14 206 pGCA_002214785_00091 - 765 3.4e-35 122.0 0.0 1 1 1.1e-37 8e-35 120.8 0.0 6 206 187 397 182 397 0.95 CagE, TrbE, VirB family, component of type IV transporter system AAA_22 PF13401.6 137 pGCA_002214785_00091 - 765 2.5e-06 27.8 0.1 1 3 4 2.9e+03 -1.5 0.0 92 115 137 161 95 188 0.69 AAA domain AAA_22 PF13401.6 137 pGCA_002214785_00091 - 765 2.5e-06 27.8 0.1 2 3 3.5 2.5e+03 -1.4 0.0 71 103 293 328 252 339 0.64 AAA domain AAA_22 PF13401.6 137 pGCA_002214785_00091 - 765 2.5e-06 27.8 0.1 3 3 7e-07 0.0005 20.3 0.0 6 70 455 549 451 690 0.74 AAA domain AAA_29 PF13555.6 61 pGCA_002214785_00091 - 765 0.00044 19.9 0.0 1 1 2e-06 0.0014 18.3 0.0 19 39 451 471 441 484 0.80 P-loop containing region of AAA domain AAA_23 PF13476.6 200 pGCA_002214785_00091 - 765 0.00067 20.2 3.1 1 3 0.26 1.9e+02 2.4 0.2 131 200 95 166 31 199 0.52 AAA domain AAA_23 PF13476.6 200 pGCA_002214785_00091 - 765 0.00067 20.2 3.1 2 3 7.9 5.7e+03 -2.4 0.0 180 194 282 296 252 362 0.68 AAA domain AAA_23 PF13476.6 200 pGCA_002214785_00091 - 765 0.00067 20.2 3.1 3 3 7.3e-06 0.0053 17.3 0.0 18 42 453 477 441 501 0.85 AAA domain AAA PF00004.29 132 pGCA_002214785_00091 - 765 0.00087 19.7 0.1 1 3 0.019 14 6.2 0.0 29 74 285 331 270 345 0.82 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_002214785_00091 - 765 0.00087 19.7 0.1 2 3 0.0033 2.3 8.6 0.0 2 19 458 475 457 500 0.83 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_002214785_00091 - 765 0.00087 19.7 0.1 3 3 2 1.4e+03 -0.4 0.0 49 111 635 688 629 703 0.66 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.7 362 pGCA_002214785_00091 - 765 0.0014 17.7 0.1 1 3 3 2.1e+03 -2.7 0.0 265 297 306 338 301 358 0.82 AAA-like domain AAA_10 PF12846.7 362 pGCA_002214785_00091 - 765 0.0014 17.7 0.1 2 3 0.0087 6.3 5.6 0.0 22 52 455 486 447 626 0.74 AAA-like domain AAA_10 PF12846.7 362 pGCA_002214785_00091 - 765 0.0014 17.7 0.1 3 3 0.0011 0.79 8.6 0.0 243 290 649 696 615 711 0.89 AAA-like domain NACHT PF05729.12 166 pGCA_002214785_00091 - 765 0.0042 17.0 0.0 1 1 1.6e-05 0.012 15.6 0.0 4 26 458 480 456 489 0.88 NACHT domain ABC_tran PF00005.27 137 pGCA_002214785_00091 - 765 0.0056 17.2 0.6 1 2 5.2 3.8e+03 -1.7 0.0 58 80 95 146 73 190 0.55 ABC transporter ABC_tran PF00005.27 137 pGCA_002214785_00091 - 765 0.0056 17.2 0.6 2 2 4e-05 0.029 14.9 0.0 4 32 447 475 445 608 0.85 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_002214785_00091 - 765 0.006 16.0 0.0 1 1 1.5e-05 0.011 15.1 0.0 23 61 436 476 420 482 0.80 FtsK/SpoIIIE family AAA_30 PF13604.6 192 pGCA_002214785_00091 - 765 0.0087 15.8 0.0 1 2 9.2e-05 0.066 12.9 0.0 20 47 456 484 448 503 0.79 AAA domain AAA_30 PF13604.6 192 pGCA_002214785_00091 - 765 0.0087 15.8 0.0 2 2 1.5 1.1e+03 -0.9 0.0 85 97 642 655 611 683 0.82 AAA domain AAA_16 PF13191.6 170 pGCA_002214785_00091 - 765 0.011 16.1 0.0 1 1 3.9e-05 0.028 14.8 0.0 25 51 455 481 446 589 0.69 AAA ATPase domain AAA_21 PF13304.6 303 pGCA_002214785_00091 - 765 0.02 14.7 4.5 1 2 5.4 3.9e+03 -2.6 0.1 71 129 268 326 254 335 0.69 AAA domain, putative AbiEii toxin, Type IV TA system AAA_21 PF13304.6 303 pGCA_002214785_00091 - 765 0.02 14.7 4.5 2 2 0.00018 0.13 12.1 1.3 2 299 457 689 457 691 0.69 AAA domain, putative AbiEii toxin, Type IV TA system ATP_bind_1 PF03029.17 241 pGCA_002214785_00091 - 765 0.037 13.8 0.0 1 2 0.016 11 5.7 0.1 185 240 150 205 109 206 0.78 Conserved hypothetical ATP binding protein ATP_bind_1 PF03029.17 241 pGCA_002214785_00091 - 765 0.037 13.8 0.0 2 2 0.016 12 5.6 0.0 1 15 459 473 459 483 0.86 Conserved hypothetical ATP binding protein ATPase_2 PF01637.18 233 pGCA_002214785_00091 - 765 0.053 13.4 1.1 1 3 1.7 1.3e+03 -0.9 1.5 52 126 93 186 80 201 0.58 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pGCA_002214785_00091 - 765 0.053 13.4 1.1 2 3 0.00064 0.46 10.4 0.0 24 56 458 490 455 502 0.86 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pGCA_002214785_00091 - 765 0.053 13.4 1.1 3 3 7.2 5.1e+03 -2.9 0.0 81 127 607 655 555 661 0.64 ATPase domain predominantly from Archaea DUF2075 PF09848.9 363 pGCA_002214785_00091 - 765 0.057 12.6 0.0 1 3 0.72 5.2e+02 -0.4 0.1 166 195 288 317 270 337 0.76 Uncharacterized conserved protein (DUF2075) DUF2075 PF09848.9 363 pGCA_002214785_00091 - 765 0.057 12.6 0.0 2 3 0.0017 1.3 8.2 0.0 5 28 458 481 456 496 0.80 Uncharacterized conserved protein (DUF2075) DUF2075 PF09848.9 363 pGCA_002214785_00091 - 765 0.057 12.6 0.0 3 3 0.84 6e+02 -0.6 0.0 86 140 644 693 609 707 0.76 Uncharacterized conserved protein (DUF2075) FliG_N PF14842.6 104 pGCA_002214785_00091 - 765 0.061 13.9 0.0 1 1 0.00019 0.14 12.7 0.0 23 86 123 186 117 199 0.83 FliG N-terminal domain AAA_24 PF13479.6 197 pGCA_002214785_00091 - 765 0.11 12.2 0.0 1 1 0.00046 0.33 10.7 0.0 6 34 458 492 456 500 0.81 AAA domain AAA_11 PF13086.6 261 pGCA_002214785_00091 - 765 0.12 12.2 0.1 1 3 9.1 6.5e+03 -3.4 0.0 111 121 140 150 77 185 0.54 AAA domain AAA_11 PF13086.6 261 pGCA_002214785_00091 - 765 0.12 12.2 0.1 2 3 0.00091 0.65 9.7 0.0 19 42 456 479 443 514 0.81 AAA domain AAA_11 PF13086.6 261 pGCA_002214785_00091 - 765 0.12 12.2 0.1 3 3 4.4 3.2e+03 -2.4 0.0 208 227 637 656 613 660 0.71 AAA domain SMC_N PF02463.19 220 pGCA_002214785_00091 - 765 0.13 11.7 0.1 1 2 0.59 4.2e+02 0.2 0.1 71 124 54 107 43 196 0.78 RecF/RecN/SMC N terminal domain SMC_N PF02463.19 220 pGCA_002214785_00091 - 765 0.13 11.7 0.1 2 2 0.0019 1.3 8.4 0.0 25 46 455 475 446 485 0.87 RecF/RecN/SMC N terminal domain cobW PF02492.19 177 pGCA_002214785_00091 - 765 0.15 11.6 0.0 1 1 0.00044 0.32 10.6 0.0 3 21 457 475 456 488 0.79 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 143 pGCA_002214785_00091 - 765 0.16 12.2 0.1 1 1 0.00067 0.48 10.6 0.1 3 19 458 474 457 593 0.87 AAA domain NB-ARC PF00931.22 252 pGCA_002214785_00091 - 765 0.16 11.1 0.1 1 2 0.81 5.8e+02 -0.5 0.1 66 117 152 201 95 213 0.60 NB-ARC domain NB-ARC PF00931.22 252 pGCA_002214785_00091 - 765 0.16 11.1 0.1 2 2 0.0017 1.2 8.3 0.0 24 43 458 477 448 486 0.84 NB-ARC domain AAA_25 PF13481.6 194 pGCA_002214785_00091 - 765 0.16 11.5 0.0 1 1 0.00048 0.34 10.4 0.0 35 57 456 478 445 487 0.89 AAA domain AAA_18 PF13238.6 130 pGCA_002214785_00091 - 765 0.17 12.5 0.3 1 2 2.5 1.8e+03 -0.6 0.2 11 68 95 150 95 199 0.52 AAA domain AAA_18 PF13238.6 130 pGCA_002214785_00091 - 765 0.17 12.5 0.3 2 2 0.0023 1.7 9.2 0.0 2 16 458 472 458 507 0.91 AAA domain DUF87 PF01935.17 227 pGCA_002214785_00091 - 765 0.32 11.1 3.5 1 4 2.9 2e+03 -1.4 0.1 103 140 137 172 92 200 0.57 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_002214785_00091 - 765 0.32 11.1 3.5 2 4 7.9 5.6e+03 -2.8 0.0 53 63 343 353 341 362 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_002214785_00091 - 765 0.32 11.1 3.5 3 4 0.00069 0.49 10.4 0.0 10 45 441 476 436 586 0.85 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_002214785_00091 - 765 0.32 11.1 3.5 4 4 3.3 2.3e+03 -1.6 0.0 39 106 680 757 677 761 0.60 Helicase HerA, central domain Phage_pRha PF09669.10 88 pGCA_002214785_00093 - 94 1.2e-15 57.8 0.2 1 1 2.6e-19 1.6e-15 57.4 0.2 39 88 21 67 1 67 0.76 Phage regulatory protein Rha (Phage_pRha) Neprosin PF03080.15 222 pGCA_002214785_00093 - 94 0.06 12.7 0.2 1 2 2.1e-05 0.13 11.6 0.0 39 73 8 41 3 53 0.86 Neprosin Neprosin PF03080.15 222 pGCA_002214785_00093 - 94 0.06 12.7 0.2 2 2 0.19 1.2e+03 -1.3 0.0 175 203 56 84 42 92 0.47 Neprosin MelC1 PF06236.11 117 pGCA_002214785_00093 - 94 0.22 11.6 0.0 1 1 5.1e-05 0.3 11.2 0.0 36 94 5 67 3 89 0.80 Tyrosinase co-factor MelC1 Bro-N PF02498.17 95 pGCA_002214785_00094 - 184 8.1e-25 87.3 0.4 1 2 9.4e-29 1.7e-24 86.3 0.1 1 95 14 105 14 105 0.88 BRO family, N-terminal domain Bro-N PF02498.17 95 pGCA_002214785_00094 - 184 8.1e-25 87.3 0.4 2 2 0.33 5.9e+03 -2.0 0.0 36 41 164 169 134 180 0.56 BRO family, N-terminal domain TrbM PF07424.11 156 pGCA_002214785_00095 - 288 4.9e-43 146.8 0.4 1 2 0.14 2.5e+03 -1.7 0.1 95 130 19 55 9 74 0.70 TrbM TrbM PF07424.11 156 pGCA_002214785_00095 - 288 4.9e-43 146.8 0.4 2 2 2.8e-47 4.9e-43 146.8 0.4 1 152 95 248 95 252 0.88 TrbM Phage_pRha PF09669.10 88 pGCA_002214785_00096 - 206 5.1e-29 100.7 0.7 1 2 1.5e-32 1.4e-28 99.3 0.0 2 88 35 133 34 133 0.89 Phage regulatory protein Rha (Phage_pRha) Phage_pRha PF09669.10 88 pGCA_002214785_00096 - 206 5.1e-29 100.7 0.7 2 2 0.32 2.8e+03 -1.1 0.1 18 47 161 192 155 203 0.46 Phage regulatory protein Rha (Phage_pRha) GN3L_Grn1 PF08701.11 76 pGCA_002214785_00096 - 206 0.078 13.1 3.3 1 1 1.5e-05 0.14 12.3 3.3 26 61 140 174 130 197 0.80 GNL3L/Grn1 putative GTPase T4SS PF07996.11 197 pGCA_002214785_00097 - 117 0.00012 22.6 10.7 1 1 1.3e-07 0.0003 21.3 10.7 1 45 30 72 30 113 0.72 Type IV secretion system proteins Snf7 PF03357.21 173 pGCA_002214785_00097 - 117 0.006 16.2 1.9 1 1 3e-06 0.0068 16.0 1.9 42 98 42 100 17 112 0.81 Snf7 Pepsin-I3 PF06394.13 74 pGCA_002214785_00097 - 117 0.008 16.3 0.1 1 1 6.3e-06 0.014 15.6 0.1 5 68 2 63 1 77 0.85 Pepsin inhibitor-3-like repeated domain YppG PF14179.6 105 pGCA_002214785_00097 - 117 0.011 16.5 2.6 1 1 6.8e-06 0.015 16.0 2.6 38 98 46 103 28 109 0.76 YppG-like protein Laminin_II PF06009.12 138 pGCA_002214785_00097 - 117 0.041 13.9 0.8 1 2 0.0029 6.5 6.8 0.6 48 89 37 78 33 80 0.81 Laminin Domain II Laminin_II PF06009.12 138 pGCA_002214785_00097 - 117 0.041 13.9 0.8 2 2 0.008 18 5.3 0.0 7 34 87 114 82 116 0.83 Laminin Domain II PhoU_div PF01865.16 214 pGCA_002214785_00097 - 117 0.072 12.4 0.1 1 1 3.5e-05 0.079 12.3 0.1 136 208 33 106 16 112 0.79 Protein of unknown function DUF47 DUF948 PF06103.11 89 pGCA_002214785_00097 - 117 0.16 12.3 1.5 1 1 0.00045 1 9.7 1.4 29 70 58 113 16 116 0.66 Bacterial protein of unknown function (DUF948) HU-CCDC81_bac_2 PF18175.1 70 pGCA_002214785_00097 - 117 0.17 11.8 2.9 1 2 0.17 3.8e+02 1.1 0.1 20 39 37 56 36 59 0.86 CCDC81-like prokaryotic HU domain 2 HU-CCDC81_bac_2 PF18175.1 70 pGCA_002214785_00097 - 117 0.17 11.8 2.9 2 2 0.0003 0.66 9.9 2.1 16 53 54 94 46 98 0.75 CCDC81-like prokaryotic HU domain 2 CENP-X PF09415.10 75 pGCA_002214785_00099 - 70 0.13 12.6 0.6 1 1 9.4e-06 0.17 12.2 0.6 26 59 4 44 2 52 0.81 CENP-S associating Centromere protein X TrbL PF04610.14 215 pGCA_002214785_00100 - 407 5.4e-12 45.9 27.2 1 1 6e-16 5.4e-12 45.9 27.2 1 213 69 272 69 274 0.92 TrbL/VirB6 plasmid conjugal transfer protein Antimicrobial_2 PF08023.12 33 pGCA_002214785_00100 - 407 1.1 9.8 0.0 1 3 1.3 1.2e+04 -3.1 0.1 17 31 258 272 257 272 0.84 Frog antimicrobial peptide Antimicrobial_2 PF08023.12 33 pGCA_002214785_00100 - 407 1.1 9.8 0.0 2 3 0.24 2.2e+03 -0.7 1.8 9 22 302 315 295 318 0.74 Frog antimicrobial peptide Antimicrobial_2 PF08023.12 33 pGCA_002214785_00100 - 407 1.1 9.8 0.0 3 3 0.00013 1.1 9.8 0.0 3 20 337 354 335 359 0.85 Frog antimicrobial peptide CLLAC PF15675.5 30 pGCA_002214785_00101 - 101 0.046 13.3 0.1 1 1 4.7e-06 0.084 12.4 0.1 4 23 29 48 28 49 0.90 CLLAC-motif containing domain W2 PF02020.18 79 pGCA_002234455_00001 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pGCA_002234455_00001 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pGCA_002234455_00001 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 pGCA_002234455_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pGCA_002234455_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pGCA_002234455_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pGCA_002234455_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pGCA_002234455_00003 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pGCA_002234455_00003 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 pGCA_002234455_00004 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pGCA_002234455_00004 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pGCA_002234455_00004 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pGCA_002234455_00004 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pGCA_002234455_00004 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pGCA_002234455_00004 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pGCA_002234455_00004 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pGCA_002234455_00004 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pGCA_002234455_00004 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 pGCA_002234455_00005 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pGCA_002234455_00005 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pGCA_002234455_00005 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pGCA_002234455_00005 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pGCA_002234455_00005 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pGCA_002234455_00005 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pGCA_002234455_00006 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pGCA_002234455_00006 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pGCA_002234455_00007 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pGCA_002234455_00007 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pGCA_002234455_00007 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_002234455_00007 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pGCA_002234455_00007 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pGCA_002234455_00007 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pGCA_002234455_00008 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pGCA_002234455_00009 - 1932 1.6e-16 60.0 0.9 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_002234455_00009 - 1932 1.6e-16 60.0 0.9 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_002234455_00009 - 1932 1.6e-16 60.0 0.9 3 3 1.4 4.8e+03 -4.1 0.0 173 197 1880 1905 1862 1920 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pGCA_002234455_00009 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_002234455_00009 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_002234455_00009 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.5 36 121 1801 1904 1748 1930 0.60 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pGCA_002234455_00009 - 1932 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pGCA_002234455_00009 - 1932 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pGCA_002234455_00009 - 1932 7.8e-06 25.8 1.5 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pGCA_002234455_00009 - 1932 7.8e-06 25.8 1.5 2 2 0.13 4.8e+02 0.4 0.0 119 152 1883 1921 1829 1929 0.75 DEAD/DEAH box helicase Eco57I PF07669.11 106 pGCA_002234455_00009 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pGCA_002234455_00009 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 pGCA_002234455_00010 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pGCA_002234455_00010 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 pGCA_002234455_00011 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_002234455_00011 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pGCA_002234455_00012 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_002234455_00012 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_002234455_00012 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pGCA_002234455_00012 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pGCA_002234455_00012 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_002234455_00012 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_002234455_00012 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pGCA_002234455_00012 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pGCA_002234455_00012 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pGCA_002234455_00012 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pGCA_002234455_00012 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE ESP PF16590.5 91 pGCA_002234455_00013 - 93 0.55 10.5 4.6 1 2 0.015 2.7e+02 1.9 0.6 26 71 3 45 2 50 0.63 Exocrine gland-secreting peptide ESP PF16590.5 91 pGCA_002234455_00013 - 93 0.55 10.5 4.6 2 2 1.5e-05 0.27 11.5 0.6 26 58 43 78 41 91 0.79 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 pGCA_002234455_00015 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pGCA_002234455_00015 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pGCA_002234455_00016 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pGCA_002234455_00016 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 pGCA_002234455_00016 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pGCA_002234455_00016 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_002234455_00016 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pGCA_002234455_00017 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pGCA_002234455_00017 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) UBA_6 PF18039.1 42 pGCA_002234455_00018 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 pGCA_002234455_00018 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pGCA_002234455_00018 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 pGCA_002234455_00018 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 pGCA_002234455_00019 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pGCA_002234455_00019 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 pGCA_002234455_00019 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pGCA_002234455_00021 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pGCA_002234455_00022 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pGCA_002234455_00023 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pGCA_002234455_00023 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_002234455_00023 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_002234455_00023 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_002234455_00023 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pGCA_002234455_00023 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_002234455_00023 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pGCA_002234455_00023 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pGCA_002234455_00023 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pGCA_002234455_00023 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pGCA_002234455_00023 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pGCA_002234455_00023 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 pGCA_002234455_00024 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pGCA_002234455_00024 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_002234455_00024 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_002234455_00024 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pGCA_002234455_00024 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_002234455_00024 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_002234455_00024 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pGCA_002234455_00024 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_002234455_00024 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pGCA_002234455_00024 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pGCA_002234455_00025 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pGCA_002234455_00025 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pGCA_002234455_00025 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pGCA_002234455_00027 - 87 3.5e-13 49.6 6.7 1 1 4.5e-17 4e-13 49.4 6.7 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pGCA_002234455_00027 - 87 0.17 11.8 4.4 1 1 2.6e-05 0.23 11.3 4.4 78 135 37 87 9 87 0.70 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pGCA_002234455_00028 - 922 4.9e-50 170.5 0.5 1 1 1.9e-53 1.2e-49 169.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pGCA_002234455_00028 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pGCA_002234455_00028 - 922 0.048 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pGCA_002234455_00029 - 188 2e-29 102.0 0.1 1 1 1.9e-33 3.3e-29 101.3 0.1 2 88 24 122 23 122 0.83 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 pGCA_002234455_00030 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pGCA_002234455_00030 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pGCA_002234455_00030 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pGCA_002234455_00030 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_002234455_00030 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_002234455_00030 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pGCA_002234455_00030 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pGCA_002234455_00030 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pGCA_002234455_00030 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pGCA_002234455_00030 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pGCA_002234455_00030 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pGCA_002234455_00030 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pGCA_002234455_00030 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pGCA_002234455_00030 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pGCA_002234455_00031 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pGCA_002234455_00032 - 91 0.00046 19.9 6.9 1 2 5.3e-08 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pGCA_002234455_00032 - 91 0.00046 19.9 6.9 2 2 0.014 1.3e+02 2.5 0.2 31 52 57 78 56 80 0.82 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pGCA_002234455_00032 - 91 0.0053 17.3 1.0 1 1 6.9e-07 0.0062 17.1 1.0 21 87 9 81 1 85 0.90 FliG N-terminal domain T4SS PF07996.11 197 pGCA_002234455_00033 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pGCA_002234455_00033 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pGCA_002234455_00033 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pGCA_002234455_00033 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pGCA_002234455_00033 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pGCA_002234455_00033 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pGCA_002234455_00033 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pGCA_002234455_00033 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pGCA_002234455_00033 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 pGCA_002234455_00033 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pGCA_002234455_00033 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pGCA_002234455_00033 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pGCA_002234455_00033 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 pGCA_002234455_00033 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pGCA_002234455_00033 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain TrbL PF04610.14 215 pGCA_002234455_00034 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pGCA_002234455_00034 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pGCA_002234455_00034 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pGCA_002234455_00034 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pGCA_002234455_00034 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pGCA_002234455_00035 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pGCA_002234455_00035 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pGCA_002234455_00036 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pGCA_002234455_00036 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pGCA_002234455_00037 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pGCA_002234455_00037 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pGCA_002234455_00037 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pGCA_002234455_00038 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pGCA_002234455_00038 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pGCA_002234455_00039 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pGCA_002234455_00039 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_002234455_00039 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pGCA_002234455_00039 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pGCA_002234455_00039 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pGCA_002234455_00039 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pGCA_002234455_00039 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pGCA_002234455_00039 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pGCA_002234455_00039 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pGCA_002234455_00039 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pGCA_002234455_00039 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pGCA_002234455_00039 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pGCA_002234455_00039 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pGCA_002234455_00039 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pGCA_002234455_00039 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pGCA_002234455_00039 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pGCA_002234455_00039 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pGCA_002234455_00039 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pGCA_002234455_00039 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pGCA_002234455_00039 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pGCA_002234455_00039 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pGCA_002234455_00039 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pGCA_002234455_00039 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pGCA_002234455_00039 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pGCA_002234455_00039 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pGCA_002234455_00039 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pGCA_002234455_00039 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pGCA_002234455_00039 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pGCA_002234455_00039 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pGCA_002234455_00039 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pGCA_002234455_00039 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pGCA_002234455_00039 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pGCA_002234455_00040 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_002234455_00040 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pGCA_002234455_00040 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_002234455_00040 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pGCA_002234455_00040 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pGCA_002234455_00041 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pGCA_002234455_00041 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pGCA_002234455_00041 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pGCA_002234455_00041 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pGCA_002234455_00041 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pGCA_002234455_00042 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pGCA_002234455_00043 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pGCA_002234455_00043 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pGCA_002234455_00043 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pGCA_002234455_00043 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_002234455_00043 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pGCA_002234455_00043 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pGCA_002234455_00045 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pGCA_002234455_00045 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pGCA_002234455_00046 - 730 5.7e-97 325.3 8.0 1 1 7.6e-100 8e-97 324.8 8.0 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pGCA_002234455_00046 - 730 5.5e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pGCA_002234455_00046 - 730 5.5e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pGCA_002234455_00046 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pGCA_002234455_00046 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pGCA_002234455_00046 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_002234455_00046 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_002234455_00046 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pGCA_002234455_00046 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pGCA_002234455_00046 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pGCA_002234455_00046 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pGCA_002234455_00046 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pGCA_002234455_00046 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pGCA_002234455_00046 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pGCA_002234455_00046 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pGCA_002234455_00046 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pGCA_002234455_00046 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pGCA_002234455_00046 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pGCA_002234455_00046 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pGCA_002234455_00046 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pGCA_002234455_00046 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pGCA_002234455_00046 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_002234455_00046 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_002234455_00046 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pGCA_002234455_00046 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pGCA_002234455_00046 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pGCA_002234455_00046 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_002234455_00046 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pGCA_002234455_00046 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pGCA_002234455_00046 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pGCA_002234455_00046 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pGCA_002234455_00046 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pGCA_002234455_00046 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pGCA_002234455_00046 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pGCA_002234455_00047 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pGCA_002234455_00047 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pGCA_002234455_00049 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pGCA_002234455_00049 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pGCA_002234455_00049 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pGCA_002234455_00049 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pGCA_002234455_00049 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pGCA_002234455_00049 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pGCA_002234455_00049 - 639 0.00029 21.1 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pGCA_002234455_00049 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pGCA_002234455_00049 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pGCA_002234455_00049 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 pGCA_002234455_00049 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 pGCA_002234455_00050 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pGCA_002234455_00050 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 pGCA_002407125_00001 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pGCA_002407125_00001 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pGCA_002407125_00001 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 pGCA_002407125_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pGCA_002407125_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pGCA_002407125_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pGCA_002407125_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pGCA_002407125_00003 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pGCA_002407125_00003 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 pGCA_002407125_00004 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pGCA_002407125_00004 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pGCA_002407125_00004 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pGCA_002407125_00004 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pGCA_002407125_00004 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pGCA_002407125_00004 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pGCA_002407125_00004 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pGCA_002407125_00004 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pGCA_002407125_00004 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 pGCA_002407125_00005 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pGCA_002407125_00005 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pGCA_002407125_00005 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pGCA_002407125_00005 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pGCA_002407125_00005 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pGCA_002407125_00005 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pGCA_002407125_00006 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pGCA_002407125_00006 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pGCA_002407125_00007 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pGCA_002407125_00007 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pGCA_002407125_00007 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_002407125_00007 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pGCA_002407125_00007 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pGCA_002407125_00007 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pGCA_002407125_00008 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 pGCA_002407125_00008 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal SNF2_N PF00176.23 350 pGCA_002407125_00009 - 1931 3.7e-16 58.8 2.9 1 3 1.3e-19 4.5e-16 58.5 0.1 57 245 1017 1272 935 1313 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_002407125_00009 - 1931 3.7e-16 58.8 2.9 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_002407125_00009 - 1931 3.7e-16 58.8 2.9 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1875 1923 1845 1924 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pGCA_002407125_00009 - 1931 7.5e-08 32.6 8.9 1 2 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_002407125_00009 - 1931 7.5e-08 32.6 8.9 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1798 1909 1724 1931 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pGCA_002407125_00009 - 1931 9.7e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pGCA_002407125_00009 - 1931 9.7e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pGCA_002407125_00009 - 1931 9.5e-06 25.5 2.0 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 pGCA_002407125_00009 - 1931 9.5e-06 25.5 2.0 2 2 0.12 4.2e+02 0.6 0.0 119 150 1882 1915 1827 1930 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 pGCA_002407125_00009 - 1931 2.5e-05 24.7 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pGCA_002407125_00009 - 1931 2.5e-05 24.7 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 pGCA_002407125_00010 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 pGCA_002407125_00010 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 pGCA_002407125_00010 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 pGCA_002407125_00010 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) Acetyltransf_7 PF13508.7 76 pGCA_002407125_00011 - 166 0.00015 22.1 0.0 1 1 1e-07 0.00031 21.1 0.0 29 75 12 75 2 76 0.60 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pGCA_002407125_00011 - 166 0.003 17.8 0.0 1 1 2.5e-06 0.0073 16.5 0.0 65 92 14 41 6 74 0.80 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 pGCA_002407125_00011 - 166 0.0052 16.8 0.3 1 1 2.7e-06 0.0082 16.2 0.3 24 67 103 146 86 150 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PHM7_cyt PF14703.6 176 pGCA_002407125_00011 - 166 0.095 12.9 0.2 1 1 5.2e-05 0.15 12.2 0.2 30 85 98 153 86 159 0.81 Cytosolic domain of 10TM putative phosphate transporter Acetyltransf_10 PF13673.7 127 pGCA_002407125_00011 - 166 0.12 12.4 0.0 1 1 0.00011 0.33 10.9 0.0 55 84 13 42 4 84 0.79 Acetyltransferase (GNAT) domain Spc24 PF08286.11 105 pGCA_002407125_00011 - 166 0.39 11.0 3.2 1 2 0.00045 1.3 9.3 0.2 54 89 63 108 31 115 0.67 Spc24 subunit of Ndc80 Spc24 PF08286.11 105 pGCA_002407125_00011 - 166 0.39 11.0 3.2 2 2 0.04 1.2e+02 3.0 0.7 12 43 111 142 101 152 0.69 Spc24 subunit of Ndc80 DUF3913 PF13052.6 57 pGCA_002407125_00012 - 82 0.046 14.0 0.3 1 1 4.2e-06 0.076 13.3 0.2 29 53 35 58 28 62 0.76 Protein of unknown function (DUF3913) Relaxase PF03432.14 242 pGCA_002407125_00013 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_002407125_00013 - 462 4.7e-10 39.5 7.4 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pGCA_002407125_00014 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_002407125_00014 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_002407125_00014 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pGCA_002407125_00014 - 183 0.046 13.8 2.1 1 1 1.7e-05 0.063 13.4 1.5 55 131 19 103 9 124 0.70 Stage III sporulation protein AB (spore_III_AB) NLRC4_HD PF17889.1 107 pGCA_002407125_00014 - 183 0.18 12.1 5.5 1 2 0.00027 0.98 9.8 1.8 14 92 6 84 3 98 0.81 NLRC4 helical domain NLRC4_HD PF17889.1 107 pGCA_002407125_00014 - 183 0.18 12.1 5.5 2 2 0.016 56 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 pGCA_002407125_00014 - 183 0.41 10.7 8.1 1 3 0.32 1.1e+03 -0.3 0.1 40 55 12 27 4 54 0.75 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_002407125_00014 - 183 0.41 10.7 8.1 2 3 0.011 39 4.4 0.6 11 46 56 91 51 97 0.87 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_002407125_00014 - 183 0.41 10.7 8.1 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pGCA_002407125_00014 - 183 0.42 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pGCA_002407125_00014 - 183 0.42 10.9 6.2 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE TcdA_TcdB PF12919.7 407 pGCA_002407125_00015 - 93 0.00084 18.7 3.1 1 1 2.1e-07 0.00093 18.6 3.1 272 348 8 80 2 92 0.84 TcdA/TcdB catalytic glycosyltransferase domain Bcl-2 PF00452.19 99 pGCA_002407125_00015 - 93 0.16 12.6 0.3 1 2 0.00017 0.77 10.5 0.1 3 47 6 48 5 49 0.87 Apoptosis regulator proteins, Bcl-2 family Bcl-2 PF00452.19 99 pGCA_002407125_00015 - 93 0.16 12.6 0.3 2 2 0.1 4.6e+02 1.6 0.0 7 31 46 69 45 81 0.73 Apoptosis regulator proteins, Bcl-2 family ESP PF16590.5 91 pGCA_002407125_00015 - 93 0.55 10.5 4.8 1 2 0.017 75 3.7 1.1 26 72 3 52 2 57 0.60 Exocrine gland-secreting peptide ESP PF16590.5 91 pGCA_002407125_00015 - 93 0.55 10.5 4.8 2 2 6e-05 0.27 11.5 0.5 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF3671 PF12420.8 115 pGCA_002407125_00015 - 93 6.5 6.9 13.7 1 2 0.042 1.9e+02 2.2 3.5 25 49 18 42 3 47 0.70 Protein of unknown function DUF3671 PF12420.8 115 pGCA_002407125_00015 - 93 6.5 6.9 13.7 2 2 9.4e-05 0.42 10.7 2.6 4 32 59 85 56 93 0.81 Protein of unknown function Toprim_3 PF13362.6 95 pGCA_002407125_00018 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pGCA_002407125_00018 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pGCA_002407125_00018 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pGCA_002407125_00018 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_002407125_00018 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pGCA_002407125_00019 - 97 0.007 16.3 0.0 1 1 1.7e-06 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) nec1 PF10379.9 184 pGCA_002407125_00019 - 97 0.067 12.7 0.0 1 1 1.1e-05 0.099 12.1 0.0 65 105 56 94 35 96 0.75 Virulence protein nec1 Sdh_cyt PF01127.22 121 pGCA_002407125_00020 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 pGCA_002407125_00020 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 pGCA_002407125_00020 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pGCA_002407125_00022 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pGCA_002407125_00023 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pGCA_002407125_00024 - 597 1.1e-14 54.5 0.0 1 1 1e-17 2.3e-14 53.4 0.0 30 193 30 175 19 176 0.85 AAA domain DnaB_C PF03796.15 255 pGCA_002407125_00024 - 597 0.00029 20.3 0.0 1 2 8.3e-07 0.0019 17.6 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_002407125_00024 - 597 0.00029 20.3 0.0 2 2 0.012 27 4.0 0.0 121 183 112 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_002407125_00024 - 597 0.0018 18.0 0.0 1 2 6.3e-06 0.014 15.1 0.0 46 87 32 73 21 96 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_002407125_00024 - 597 0.0018 18.0 0.0 2 2 0.42 9.3e+02 -0.6 0.0 99 118 111 130 102 168 0.69 IstB-like ATP binding protein ATPase PF06745.13 231 pGCA_002407125_00024 - 597 0.0084 15.5 0.0 1 2 2.4e-05 0.053 12.9 0.0 16 70 30 83 24 167 0.92 KaiC ATPase PF06745.13 231 pGCA_002407125_00024 - 597 0.0084 15.5 0.0 2 2 0.72 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pGCA_002407125_00024 - 597 0.014 15.8 0.2 1 2 0.00015 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_002407125_00024 - 597 0.014 15.8 0.2 2 2 0.2 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pGCA_002407125_00024 - 597 0.15 12.1 1.7 1 1 0.00034 0.77 9.8 1.7 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pGCA_002407125_00024 - 597 0.38 10.7 3.0 1 3 0.0021 4.7 7.2 0.0 10 35 57 82 53 103 0.92 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pGCA_002407125_00024 - 597 0.38 10.7 3.0 2 3 0.2 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pGCA_002407125_00024 - 597 0.38 10.7 3.0 3 3 0.72 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) VASP_tetra PF08776.11 37 pGCA_002407125_00024 - 597 2.7 7.6 6.7 1 2 0.0021 4.7 6.9 0.1 16 36 97 117 94 118 0.91 VASP tetramerisation domain VASP_tetra PF08776.11 37 pGCA_002407125_00024 - 597 2.7 7.6 6.7 2 2 0.087 2e+02 1.7 2.6 16 28 517 529 511 530 0.91 VASP tetramerisation domain Resolvase PF00239.21 146 pGCA_002407125_00025 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pGCA_002407125_00025 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_002407125_00025 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_002407125_00025 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pGCA_002407125_00025 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_002407125_00025 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pGCA_002407125_00025 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain CRISPR_Cas2 PF09827.9 76 pGCA_002407125_00026 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pGCA_002407125_00026 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 TrbC PF04956.13 99 pGCA_002407125_00028 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pGCA_002407125_00028 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pGCA_002407125_00029 - 922 3.1e-51 174.4 0.4 1 1 7.9e-55 7.1e-51 173.2 0.4 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pGCA_002407125_00029 - 922 3.6e-21 75.2 0.8 1 1 6.9e-25 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein Phage_pRha PF09669.10 88 pGCA_002407125_00030 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 pGCA_002407125_00030 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 pGCA_002407125_00030 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) PBECR2 PF18810.1 119 pGCA_002407125_00031 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 SSB PF00436.25 104 pGCA_002407125_00032 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pGCA_002407125_00033 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pGCA_002407125_00033 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pGCA_002407125_00033 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pGCA_002407125_00033 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pGCA_002407125_00033 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pGCA_002407125_00033 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pGCA_002407125_00033 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pGCA_002407125_00034 - 329 1.7e-28 100.4 13.1 1 1 5.2e-32 2.3e-28 99.9 13.1 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pGCA_002407125_00034 - 329 0.0035 17.5 0.5 1 2 0.27 1.2e+03 -0.3 0.0 30 54 134 158 120 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pGCA_002407125_00034 - 329 0.0035 17.5 0.5 2 2 4.7e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 pGCA_002407125_00034 - 329 0.018 15.7 0.8 1 2 1.3 6e+03 -2.1 0.0 55 70 124 139 101 163 0.57 von Willebrand factor type A domain VWA_2 PF13519.6 107 pGCA_002407125_00034 - 329 0.018 15.7 0.8 2 2 8.6e-06 0.039 14.6 0.2 31 84 208 270 197 295 0.83 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 pGCA_002407125_00034 - 329 0.48 11.1 11.5 1 2 0.042 1.9e+02 2.7 0.8 49 135 108 145 95 182 0.47 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pGCA_002407125_00034 - 329 0.48 11.1 11.5 2 2 8.9e-05 0.4 11.4 4.6 49 117 225 307 205 328 0.69 Apoptosis antagonizing transcription factor TrbL PF04610.14 215 pGCA_002407125_00035 - 331 2.1e-30 106.1 33.3 1 2 4.7e-34 2.1e-30 106.1 33.3 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pGCA_002407125_00035 - 331 2.1e-30 106.1 33.3 2 2 0.59 2.6e+03 -2.1 0.1 58 88 289 325 260 330 0.47 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pGCA_002407125_00035 - 331 0.069 13.0 1.0 1 2 0.54 2.4e+03 -1.6 0.1 39 51 70 82 61 114 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pGCA_002407125_00035 - 331 0.069 13.0 1.0 2 2 5e-05 0.23 11.3 0.1 37 81 243 287 222 298 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 pGCA_002407125_00035 - 331 0.17 11.9 0.0 1 1 6.8e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) AIM3 PF17096.5 88 pGCA_002407125_00035 - 331 0.3 12.1 6.0 1 1 0.00013 0.57 11.1 6.0 9 38 299 328 284 330 0.89 Altered inheritance of mitochondria protein 3 La_HTH_kDCL PF18177.1 90 pGCA_002407125_00036 - 54 0.2 12.0 0.0 1 1 1.2e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain VirB8 PF04335.13 214 pGCA_002407125_00037 - 219 1.6e-52 178.5 0.5 1 1 2e-56 1.8e-52 178.3 0.5 4 214 10 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pGCA_002407125_00037 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pGCA_002407125_00038 - 298 9.6e-56 188.8 1.9 1 1 8.4e-60 1.5e-55 188.2 1.9 2 211 32 273 31 273 0.92 Conjugal transfer protein TrbI PF03743.14 187 pGCA_002407125_00039 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.5e+03 -3.4 0.3 136 154 141 166 120 174 0.53 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pGCA_002407125_00039 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pGCA_002407125_00039 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease T2SSE PF00437.20 273 pGCA_002407125_00040 - 339 6.9e-55 186.0 0.0 1 1 1.4e-57 8.1e-55 185.8 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pGCA_002407125_00040 - 339 7.2e-05 23.3 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_002407125_00040 - 339 0.00012 21.6 0.0 1 1 3.2e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pGCA_002407125_00040 - 339 0.00028 20.4 0.0 1 1 9.2e-07 0.00052 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pGCA_002407125_00040 - 339 0.0014 18.9 0.0 1 1 4.7e-06 0.0026 18.0 0.0 5 56 160 221 155 244 0.72 AAA domain DEAD PF00270.29 176 pGCA_002407125_00040 - 339 0.0014 18.4 0.0 1 1 4.1e-06 0.0023 17.7 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pGCA_002407125_00040 - 339 0.0026 17.5 0.2 1 1 9.7e-06 0.0054 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pGCA_002407125_00040 - 339 0.0035 17.3 0.0 1 1 1.3e-05 0.0073 16.3 0.0 10 45 152 186 141 194 0.74 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pGCA_002407125_00040 - 339 0.0055 15.7 0.0 1 1 1.4e-05 0.0079 15.1 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pGCA_002407125_00040 - 339 0.0073 16.2 0.0 1 1 2.3e-05 0.013 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pGCA_002407125_00040 - 339 0.0088 15.4 0.0 1 1 2.6e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pGCA_002407125_00040 - 339 0.0091 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 305 0.85 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pGCA_002407125_00040 - 339 0.018 15.1 0.0 1 1 6.4e-05 0.036 14.2 0.0 27 48 164 185 142 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 pGCA_002407125_00040 - 339 0.021 13.8 0.0 1 1 6.2e-05 0.035 13.0 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 pGCA_002407125_00040 - 339 0.023 14.7 0.0 1 1 9.6e-05 0.054 13.5 0.0 5 50 147 186 135 248 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 pGCA_002407125_00040 - 339 0.024 14.4 0.0 1 1 9.2e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 pGCA_002407125_00040 - 339 0.026 14.2 0.0 1 1 9.8e-05 0.055 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pGCA_002407125_00040 - 339 0.031 13.8 0.0 1 1 0.00011 0.061 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 pGCA_002407125_00040 - 339 0.035 14.2 0.1 1 1 0.00019 0.11 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 pGCA_002407125_00040 - 339 0.04 13.7 0.0 1 1 0.00011 0.064 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 pGCA_002407125_00040 - 339 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 pGCA_002407125_00040 - 339 0.046 13.0 0.0 1 1 0.00015 0.082 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin PRK PF00485.18 197 pGCA_002407125_00040 - 339 0.058 13.1 0.0 1 1 0.0002 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pGCA_002407125_00040 - 339 0.065 11.9 0.0 1 1 0.00016 0.092 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pGCA_002407125_00040 - 339 0.075 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pGCA_002407125_00040 - 339 0.089 12.7 0.0 1 1 0.00036 0.2 11.5 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pGCA_002407125_00040 - 339 0.089 12.7 0.4 1 1 0.00039 0.22 11.5 0.3 71 102 149 179 129 220 0.81 Microtubule binding NTPase_1 PF03266.15 168 pGCA_002407125_00040 - 339 0.11 12.4 0.1 1 1 0.00042 0.23 11.3 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 pGCA_002407125_00040 - 339 0.12 13.0 0.0 1 2 8.1 4.6e+03 -1.9 0.0 25 60 14 49 4 61 0.76 AAA domain AAA_18 PF13238.6 130 pGCA_002407125_00040 - 339 0.12 13.0 0.0 2 2 0.0007 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 pGCA_002407125_00040 - 339 0.15 11.7 0.0 1 1 0.00043 0.24 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pGCA_002407125_00040 - 339 0.15 11.7 0.0 1 1 0.00044 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pGCA_002407125_00040 - 339 0.38 11.2 4.1 1 2 2.7 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 pGCA_002407125_00040 - 339 0.38 11.2 4.1 2 2 0.00068 0.38 11.2 1.3 22 37 163 178 160 184 0.87 AAA domain Carbam_trans_N PF02543.15 338 pGCA_002407125_00041 - 267 0.053 13.2 0.0 1 1 4.1e-06 0.073 12.7 0.0 195 313 117 236 74 243 0.86 Carbamoyltransferase N-terminus T4SS-DNA_transf PF02534.14 469 pGCA_002407125_00042 - 603 8.3e-104 348.0 0.1 1 1 3.2e-107 1.1e-103 347.5 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_002407125_00042 - 603 3.5e-24 85.2 0.0 1 1 1.9e-27 6.8e-24 84.3 0.0 2 125 406 528 405 529 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pGCA_002407125_00042 - 603 3.2e-15 55.9 0.0 1 2 2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_002407125_00042 - 603 3.2e-15 55.9 0.0 2 2 1.6e-13 5.8e-10 38.6 0.0 187 369 347 531 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 pGCA_002407125_00042 - 603 0.17 11.9 0.1 1 1 8.3e-05 0.3 11.2 0.1 37 93 9 87 3 100 0.78 Putative Actinobacterial Holin-X, holin superfamily III ECF_trnsprt PF12822.7 172 pGCA_002407125_00042 - 603 1.2 9.2 8.3 1 1 0.00056 2 8.5 8.3 101 168 4 79 1 81 0.85 ECF transporter, substrate-specific component Cag12 PF13117.6 97 pGCA_002407125_00043 - 143 1.4e-16 60.7 0.3 1 1 2.1e-20 1.9e-16 60.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pGCA_002407125_00043 - 143 0.06 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 pGCA_002407125_00044 - 252 4.1e-38 130.8 2.0 1 1 2.9e-42 5.3e-38 130.4 2.0 1 154 25 190 25 192 0.88 TrbM PRELI PF04707.14 157 pGCA_002407125_00045 - 265 0.044 13.6 0.3 1 2 0.26 2.4e+03 -1.8 0.1 107 133 23 45 5 72 0.49 PRELI-like family PRELI PF04707.14 157 pGCA_002407125_00045 - 265 0.044 13.6 0.3 2 2 4.9e-06 0.044 13.6 0.3 96 155 83 147 78 149 0.87 PRELI-like family TACC_C PF05010.14 201 pGCA_002407125_00045 - 265 0.92 9.3 9.3 1 2 0.00027 2.4 7.9 8.2 14 124 2 111 1 135 0.79 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 pGCA_002407125_00045 - 265 0.92 9.3 9.3 2 2 0.035 3.2e+02 1.0 1.1 8 45 100 139 94 148 0.70 Transforming acidic coiled-coil-containing protein (TACC), C-terminal CdhD PF03599.16 386 pGCA_002407125_00046 - 246 0.002 16.9 0.0 1 1 5.3e-07 0.0031 16.3 0.0 269 358 39 127 30 136 0.86 CO dehydrogenase/acetyl-CoA synthase delta subunit Pox_RNA_pol PF03293.14 160 pGCA_002407125_00046 - 246 0.012 15.3 0.9 1 1 4.5e-06 0.027 14.2 0.9 35 158 20 138 7 140 0.83 Poxvirus DNA-directed RNA polymerase, 18 kD subunit Redoxin PF08534.10 147 pGCA_002407125_00046 - 246 0.059 13.1 0.5 1 2 0.079 4.7e+02 0.4 0.0 117 146 49 76 31 77 0.79 Redoxin Redoxin PF08534.10 147 pGCA_002407125_00046 - 246 0.059 13.1 0.5 2 2 7.9e-05 0.47 10.2 0.1 49 76 184 213 178 230 0.79 Redoxin DUF1461 PF07314.11 189 pGCA_002407125_00047 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) Topoisom_bac PF01131.20 413 pGCA_002407125_00048 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pGCA_002407125_00048 - 730 6.3e-12 45.6 2.6 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pGCA_002407125_00048 - 730 6.3e-12 45.6 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pGCA_002407125_00048 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pGCA_002407125_00048 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pGCA_002407125_00048 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_002407125_00048 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_002407125_00048 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pGCA_002407125_00048 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pGCA_002407125_00048 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pGCA_002407125_00048 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pGCA_002407125_00048 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pGCA_002407125_00048 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pGCA_002407125_00048 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pGCA_002407125_00048 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pGCA_002407125_00048 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pGCA_002407125_00048 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pGCA_002407125_00048 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pGCA_002407125_00048 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pGCA_002407125_00048 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pGCA_002407125_00048 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pGCA_002407125_00048 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_002407125_00048 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_002407125_00048 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pGCA_002407125_00048 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pGCA_002407125_00048 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pGCA_002407125_00048 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_002407125_00048 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pGCA_002407125_00048 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pGCA_002407125_00048 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pGCA_002407125_00048 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pGCA_002407125_00048 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pGCA_002407125_00048 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pGCA_002407125_00048 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pGCA_002407125_00050 - 233 2.9e-05 24.0 2.2 1 2 0.42 3.8e+03 -2.3 0.0 56 65 49 58 14 83 0.63 PcfJ-like protein PcfJ PF14284.6 144 pGCA_002407125_00050 - 233 2.9e-05 24.0 2.2 2 2 3.2e-09 2.9e-05 24.0 2.2 3 133 90 216 88 226 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pGCA_002407125_00050 - 233 0.0053 16.7 3.0 1 1 1.6e-06 0.015 15.3 3.0 37 126 71 205 10 215 0.75 Intein splicing domain APH PF01636.23 240 pGCA_002407125_00052 - 306 5.8e-22 78.8 0.0 1 1 2.1e-25 7.5e-22 78.4 0.0 13 230 39 256 27 265 0.75 Phosphotransferase enzyme family RIO1 PF01163.22 188 pGCA_002407125_00052 - 306 2.1e-06 27.5 0.1 1 2 0.00064 2.3 7.8 0.0 47 111 52 117 46 131 0.76 RIO1 family RIO1 PF01163.22 188 pGCA_002407125_00052 - 306 2.1e-06 27.5 0.1 2 2 5.8e-07 0.0021 17.7 0.1 97 154 165 223 149 253 0.81 RIO1 family DUF1679 PF07914.11 414 pGCA_002407125_00052 - 306 0.00034 19.6 0.1 1 2 1 3.7e+03 -3.6 0.0 113 142 60 89 55 92 0.78 Protein of unknown function (DUF1679) DUF1679 PF07914.11 414 pGCA_002407125_00052 - 306 0.00034 19.6 0.1 2 2 1.6e-07 0.00056 18.9 0.0 213 318 134 238 102 253 0.70 Protein of unknown function (DUF1679) Choline_kinase PF01633.20 213 pGCA_002407125_00052 - 306 0.00076 19.1 0.2 1 2 5.9e-07 0.0021 17.7 0.1 21 171 61 218 46 219 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 pGCA_002407125_00052 - 306 0.00076 19.1 0.2 2 2 0.51 1.8e+03 -1.7 0.0 6 25 249 268 247 271 0.89 Choline/ethanolamine kinase EcKinase PF02958.20 294 pGCA_002407125_00052 - 306 0.0095 15.3 0.1 1 1 3.7e-06 0.013 14.8 0.1 189 270 162 243 121 262 0.65 Ecdysteroid kinase GTP_EFTU PF00009.27 194 pGCA_002407125_00053 - 639 5.6e-59 198.9 0.3 1 1 3.9e-62 7.8e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pGCA_002407125_00053 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pGCA_002407125_00053 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pGCA_002407125_00053 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pGCA_002407125_00053 - 639 2.1e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pGCA_002407125_00053 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pGCA_002407125_00053 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pGCA_002407125_00053 - 639 0.0091 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pGCA_002407125_00053 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pGCA_002407125_00053 - 639 0.05 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family CPSF_A PF03178.15 322 pGCA_002407125_00055 - 95 0.034 13.4 0.0 1 1 9.6e-06 0.034 13.4 0.0 248 286 57 94 23 95 0.80 CPSF A subunit region ATPase PF06745.13 231 pGCA_002407125_00055 - 95 0.048 13.0 0.2 1 1 1.4e-05 0.049 13.0 0.2 73 152 7 87 1 94 0.74 KaiC TipAS PF07739.13 117 pGCA_002407125_00055 - 95 0.061 13.9 1.5 1 1 0.00033 1.2 9.7 1.9 27 96 5 80 1 92 0.80 TipAS antibiotic-recognition domain 3HCDH PF00725.22 97 pGCA_002407125_00055 - 95 0.091 13.4 0.2 1 1 3.8e-05 0.14 12.8 0.2 7 65 36 93 33 95 0.91 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DUF4942 PF13708.6 199 pGCA_002407125_00055 - 95 0.15 12.0 0.0 1 1 7.1e-05 0.26 11.3 0.0 22 74 36 87 33 93 0.88 Domain of unknown function (DUF4942) PNP_UDP_1 PF01048.20 234 pGCA_002407125_00056 - 256 7.6e-29 100.6 0.0 1 1 4.8e-33 8.7e-29 100.4 0.0 3 219 34 237 32 255 0.86 Phosphorylase superfamily DUF4111 PF13427.6 103 pGCA_002407125_00057 - 218 3.1e-17 62.6 0.0 1 3 0.56 2.5e+03 -1.3 0.0 60 80 3 23 2 25 0.81 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pGCA_002407125_00057 - 218 3.1e-17 62.6 0.0 2 3 1.5 6.8e+03 -2.7 0.0 8 22 52 66 50 72 0.73 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pGCA_002407125_00057 - 218 3.1e-17 62.6 0.0 3 3 3.9e-20 1.8e-16 60.2 0.0 1 67 148 214 148 217 0.97 Domain of unknown function (DUF4111) Polbeta PF18765.1 93 pGCA_002407125_00057 - 218 8.7e-10 38.6 0.0 1 2 8.5e-13 3.8e-09 36.5 0.0 8 74 22 92 11 97 0.77 Polymerase beta, Nucleotidyltransferase Polbeta PF18765.1 93 pGCA_002407125_00057 - 218 8.7e-10 38.6 0.0 2 2 0.33 1.5e+03 -0.6 0.0 17 42 103 134 98 153 0.72 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 95 pGCA_002407125_00057 - 218 2.4e-06 27.8 0.0 1 1 1e-09 4.5e-06 26.9 0.0 14 76 25 89 11 107 0.76 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 199 pGCA_002407125_00057 - 218 0.00015 21.7 0.0 1 1 4.6e-08 0.00021 21.3 0.0 88 138 21 71 2 84 0.86 Adenylate cyclase NT domain DUF4111 PF13427.6 103 pGCA_002407125_00058 - 55 0.0023 18.0 0.0 1 1 1.5e-07 0.0027 17.9 0.0 69 103 13 47 7 47 0.95 Domain of unknown function (DUF4111) AAA_18 PF13238.6 130 pGCA_002407125_00059 - 181 5.7e-14 52.8 0.0 1 1 1.6e-16 7.6e-14 52.4 0.0 1 124 7 135 7 141 0.86 AAA domain CPT PF07931.12 174 pGCA_002407125_00059 - 181 3e-09 37.0 0.0 1 1 1.2e-11 5.8e-09 36.0 0.0 1 172 4 172 4 174 0.81 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 pGCA_002407125_00059 - 181 6.4e-09 36.1 0.0 1 1 1.9e-11 9.4e-09 35.6 0.0 2 136 7 144 6 146 0.81 AAA domain Zeta_toxin PF06414.12 199 pGCA_002407125_00059 - 181 1.5e-08 34.2 0.0 1 1 7.5e-11 3.6e-08 32.9 0.0 18 162 6 140 2 174 0.78 Zeta toxin AAA PF00004.29 132 pGCA_002407125_00059 - 181 8.7e-06 26.2 0.2 1 2 1.7e-07 8.1e-05 23.1 0.0 2 34 8 41 7 83 0.78 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_002407125_00059 - 181 8.7e-06 26.2 0.2 2 2 0.71 3.5e+02 1.6 0.0 104 131 108 135 56 136 0.84 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 163 pGCA_002407125_00059 - 181 0.0001 22.6 0.1 1 2 8.3e-07 0.0004 20.7 0.0 2 62 7 71 6 85 0.62 AAA domain AAA_28 PF13521.6 163 pGCA_002407125_00059 - 181 0.0001 22.6 0.1 2 2 2.6 1.2e+03 -0.4 0.1 137 137 133 133 91 177 0.52 AAA domain AAA_17 PF13207.6 136 pGCA_002407125_00059 - 181 0.0002 21.8 0.0 1 1 7.1e-07 0.00035 21.0 0.0 1 128 10 131 10 139 0.78 AAA domain AAA_22 PF13401.6 137 pGCA_002407125_00059 - 181 0.00034 20.9 0.0 1 2 2e-06 0.00099 19.4 0.0 4 33 3 32 1 84 0.83 AAA domain AAA_22 PF13401.6 137 pGCA_002407125_00059 - 181 0.00034 20.9 0.0 2 2 3.7 1.8e+03 -0.9 0.0 62 83 121 141 96 178 0.64 AAA domain AAA_14 PF13173.6 131 pGCA_002407125_00059 - 181 0.00043 20.3 0.0 1 1 1.4e-06 0.00066 19.7 0.0 2 127 4 141 3 145 0.72 AAA domain RuvB_N PF05496.12 159 pGCA_002407125_00059 - 181 0.0016 18.2 0.1 1 2 1.2e-05 0.0057 16.4 0.0 36 60 7 31 3 49 0.85 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 pGCA_002407125_00059 - 181 0.0016 18.2 0.1 2 2 3.1 1.5e+03 -1.2 0.0 96 114 111 129 104 167 0.72 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 146 pGCA_002407125_00059 - 181 0.0024 18.2 0.0 1 1 8.6e-06 0.0042 17.4 0.0 9 35 3 29 1 77 0.87 AAA domain ABC_tran PF00005.27 137 pGCA_002407125_00059 - 181 0.0031 18.0 0.1 1 1 8.5e-06 0.0041 17.6 0.1 9 43 2 35 1 133 0.85 ABC transporter AAA_16 PF13191.6 170 pGCA_002407125_00059 - 181 0.0045 17.4 0.0 1 1 1.9e-05 0.0092 16.4 0.0 22 62 2 43 1 76 0.75 AAA ATPase domain KTI12 PF08433.10 272 pGCA_002407125_00059 - 181 0.0048 16.4 0.0 1 2 2e-05 0.0095 15.4 0.0 3 42 6 44 5 87 0.74 Chromatin associated protein KTI12 KTI12 PF08433.10 272 pGCA_002407125_00059 - 181 0.0048 16.4 0.0 2 2 4.5 2.2e+03 -2.2 0.0 263 263 137 137 104 174 0.57 Chromatin associated protein KTI12 DUF2075 PF09848.9 363 pGCA_002407125_00059 - 181 0.005 16.1 0.2 1 1 1.6e-05 0.0077 15.5 0.1 2 29 5 32 4 68 0.84 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.20 158 pGCA_002407125_00059 - 181 0.0076 16.2 0.0 1 2 0.00023 0.11 12.3 0.0 1 79 3 84 3 111 0.64 Adenylylsulphate kinase APS_kinase PF01583.20 158 pGCA_002407125_00059 - 181 0.0076 16.2 0.0 2 2 0.37 1.8e+02 1.9 0.0 44 74 118 148 98 155 0.85 Adenylylsulphate kinase AAA_30 PF13604.6 192 pGCA_002407125_00059 - 181 0.0092 15.7 0.1 1 1 3.2e-05 0.016 15.0 0.1 17 40 3 26 1 39 0.82 AAA domain AAA_24 PF13479.6 197 pGCA_002407125_00059 - 181 0.0096 15.7 0.3 1 1 2e-05 0.0097 15.6 0.3 3 23 5 30 3 171 0.85 AAA domain Ploopntkinase1 PF18748.1 196 pGCA_002407125_00059 - 181 0.0099 15.4 0.0 1 2 0.087 42 3.6 0.0 16 41 3 28 1 41 0.82 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 pGCA_002407125_00059 - 181 0.0099 15.4 0.0 2 2 0.00091 0.44 10.0 0.0 93 164 72 143 54 154 0.81 P-loop Nucleotide Kinase1 T2SSE PF00437.20 273 pGCA_002407125_00059 - 181 0.011 14.8 0.0 1 1 3.4e-05 0.016 14.3 0.0 130 158 5 33 1 75 0.82 Type II/IV secretion system protein ATPase PF06745.13 231 pGCA_002407125_00059 - 181 0.011 15.1 1.2 1 2 3.6e-05 0.017 14.5 0.1 18 37 3 22 1 35 0.87 KaiC ATPase PF06745.13 231 pGCA_002407125_00059 - 181 0.011 15.1 1.2 2 2 2.3 1.1e+03 -1.3 0.1 98 129 123 159 100 175 0.49 KaiC Rad17 PF03215.15 186 pGCA_002407125_00059 - 181 0.012 15.5 0.0 1 2 8.1e-05 0.039 13.9 0.0 45 71 4 30 1 40 0.88 Rad17 P-loop domain Rad17 PF03215.15 186 pGCA_002407125_00059 - 181 0.012 15.5 0.0 2 2 3.2 1.5e+03 -1.1 0.0 113 146 110 145 96 169 0.62 Rad17 P-loop domain SRP54 PF00448.22 196 pGCA_002407125_00059 - 181 0.016 14.8 0.1 1 1 6.3e-05 0.031 13.9 0.1 3 40 6 42 4 49 0.84 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 168 pGCA_002407125_00059 - 181 0.021 14.7 1.0 1 2 0.0001 0.049 13.5 0.3 2 22 7 27 6 35 0.85 NTPase NTPase_1 PF03266.15 168 pGCA_002407125_00059 - 181 0.021 14.7 1.0 2 2 2.1 1e+03 -0.5 0.0 115 136 97 118 58 172 0.59 NTPase dNK PF01712.19 204 pGCA_002407125_00059 - 181 0.034 14.0 0.2 1 2 0.0019 0.94 9.3 0.0 1 52 7 75 7 77 0.66 Deoxynucleoside kinase dNK PF01712.19 204 pGCA_002407125_00059 - 181 0.034 14.0 0.2 2 2 0.19 94 2.8 0.2 118 162 102 143 92 175 0.70 Deoxynucleoside kinase Sigma54_activat PF00158.26 168 pGCA_002407125_00059 - 181 0.035 13.8 0.0 1 1 0.00014 0.066 12.9 0.0 25 68 7 57 1 89 0.76 Sigma-54 interaction domain TIP49 PF06068.13 351 pGCA_002407125_00059 - 181 0.035 13.3 0.2 1 2 0.00023 0.11 11.6 0.0 50 77 4 31 1 46 0.84 TIP49 P-loop domain TIP49 PF06068.13 351 pGCA_002407125_00059 - 181 0.035 13.3 0.2 2 2 1.4 7e+02 -0.8 0.1 148 178 126 156 105 172 0.75 TIP49 P-loop domain ATPase_2 PF01637.18 233 pGCA_002407125_00059 - 181 0.039 13.8 0.3 1 2 0.0045 2.2 8.2 0.0 19 49 3 32 1 50 0.75 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pGCA_002407125_00059 - 181 0.039 13.8 0.3 2 2 0.085 41 4.0 0.1 48 97 102 150 92 179 0.53 ATPase domain predominantly from Archaea DnaB_C PF03796.15 255 pGCA_002407125_00059 - 181 0.06 12.7 0.4 1 2 0.00026 0.13 11.6 0.0 17 47 2 32 1 42 0.83 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_002407125_00059 - 181 0.06 12.7 0.4 2 2 2.6 1.3e+03 -1.5 0.1 84 91 136 143 98 179 0.39 DnaB-like helicase C terminal domain MKT1_N PF12247.8 90 pGCA_002407125_00059 - 181 0.069 13.5 0.0 1 1 0.00057 0.28 11.6 0.0 14 51 39 74 36 147 0.88 Temperature dependent protein affecting M2 dsRNA replication AAA_11 PF13086.6 261 pGCA_002407125_00059 - 181 0.073 12.8 1.5 1 1 0.00025 0.12 12.1 1.5 16 42 3 29 1 179 0.85 AAA domain PhoH PF02562.16 205 pGCA_002407125_00059 - 181 0.076 12.5 0.1 1 1 0.0003 0.14 11.5 0.1 18 49 3 34 1 36 0.84 PhoH-like protein RNA_helicase PF00910.22 107 pGCA_002407125_00059 - 181 0.089 13.2 0.0 1 1 0.00032 0.16 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase NACHT PF05729.12 166 pGCA_002407125_00059 - 181 0.1 12.5 0.0 1 1 0.00036 0.17 11.8 0.0 1 40 5 45 5 73 0.78 NACHT domain ATP-synt_ab PF00006.25 213 pGCA_002407125_00059 - 181 0.14 11.8 0.0 1 1 0.00028 0.14 11.8 0.0 13 45 3 34 1 178 0.82 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 181 pGCA_002407125_00059 - 181 0.18 11.3 0.7 1 2 0.00058 0.28 10.7 0.1 31 63 2 34 1 46 0.80 P-loop containing dynein motor region AAA_7 PF12775.7 181 pGCA_002407125_00059 - 181 0.18 11.3 0.7 2 2 8.9 4.3e+03 -3.0 0.0 65 82 156 173 132 176 0.64 P-loop containing dynein motor region Cytidylate_kin2 PF13189.6 179 pGCA_002407125_00059 - 181 0.2 11.8 1.5 1 2 0.038 19 5.4 0.1 1 23 6 28 6 36 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 pGCA_002407125_00059 - 181 0.2 11.8 1.5 2 2 0.026 12 5.9 0.1 108 147 99 138 28 143 0.73 Cytidylate kinase-like family APH PF01636.23 240 pGCA_002407125_00060 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pGCA_002407125_00060 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pGCA_002407125_00060 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pGCA_002407125_00060 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pGCA_002407125_00060 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pGCA_002407125_00060 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 pGCA_002407125_00061 - 139 2.2e-51 174.9 0.1 1 1 1.4e-55 2.4e-51 174.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase Adenyl_transf PF04439.12 279 pGCA_002407125_00062 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 pGCA_002407125_00063 - 180 3.8e-20 72.3 0.1 1 1 2.3e-23 5.3e-20 71.8 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 pGCA_002407125_00063 - 180 1.2e-13 51.2 0.1 1 1 9.1e-17 2e-13 50.5 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 pGCA_002407125_00063 - 180 2.7e-12 46.7 0.0 1 1 1.6e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 pGCA_002407125_00063 - 180 1.1e-09 38.6 1.1 1 1 6e-13 1.3e-09 38.3 1.1 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 pGCA_002407125_00063 - 180 0.0011 19.7 0.0 1 1 6.1e-07 0.0014 19.4 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 pGCA_002407125_00063 - 180 0.0011 19.0 0.0 1 1 1.2e-06 0.0027 17.8 0.0 6 58 79 130 73 132 0.85 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 pGCA_002407125_00063 - 180 0.015 15.4 0.0 1 1 2.6e-05 0.059 13.5 0.0 21 126 50 154 43 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 pGCA_002407125_00063 - 180 0.038 14.0 0.0 1 1 2.9e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein APH PF01636.23 240 pGCA_002407125_00064 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pGCA_002407125_00064 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pGCA_002407125_00064 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pGCA_002407125_00064 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family zf-HC2 PF13490.6 35 pGCA_002407125_00065 - 221 3.2e-06 27.3 2.7 1 1 1.2e-09 6.9e-06 26.2 2.7 4 35 11 42 9 42 0.97 Putative zinc-finger Glyco_hydro_100 PF12899.7 435 pGCA_002407125_00065 - 221 0.11 11.1 0.0 1 2 5.6e-05 0.34 9.5 0.0 29 75 3 50 1 72 0.86 Alkaline and neutral invertase Glyco_hydro_100 PF12899.7 435 pGCA_002407125_00065 - 221 0.11 11.1 0.0 2 2 0.094 5.6e+02 -1.1 0.0 265 319 107 163 99 169 0.82 Alkaline and neutral invertase TetR_C_11 PF16859.5 113 pGCA_002407125_00065 - 221 0.15 12.4 0.7 1 1 3.5e-05 0.21 11.9 0.7 12 111 12 110 11 112 0.88 Tetracyclin repressor-like, C-terminal domain Sigma70_r4_2 PF08281.12 54 pGCA_002407125_00066 - 150 2.5e-07 30.3 0.0 1 1 6.3e-11 3.8e-07 29.7 0.0 1 54 87 140 87 140 0.97 Sigma-70, region 4 Sigma70_r4 PF04545.16 50 pGCA_002407125_00066 - 150 3.8e-06 26.3 0.0 1 1 1.1e-09 6.3e-06 25.6 0.0 1 48 93 140 93 142 0.93 Sigma-70, region 4 HTH_38 PF13936.6 44 pGCA_002407125_00066 - 150 0.021 14.6 0.0 1 1 6.9e-06 0.041 13.6 0.0 3 33 95 125 93 126 0.92 Helix-turn-helix domain Resolvase PF00239.21 146 pGCA_002407145_00001 - 128 3e-12 46.9 0.0 1 1 5e-16 4.5e-12 46.3 0.0 82 146 3 69 1 69 0.94 Resolvase, N terminal domain HTH_38 PF13936.6 44 pGCA_002407145_00001 - 128 0.011 15.5 0.1 1 2 0.00053 4.7 7.0 0.0 2 35 41 75 41 78 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pGCA_002407145_00001 - 128 0.011 15.5 0.1 2 2 0.0009 8.1 6.3 0.0 11 26 86 101 82 105 0.88 Helix-turn-helix domain AAA_25 PF13481.6 194 pGCA_002407145_00002 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pGCA_002407145_00002 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_002407145_00002 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pGCA_002407145_00002 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pGCA_002407145_00002 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pGCA_002407145_00002 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 pGCA_002407145_00002 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pGCA_002407145_00002 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_002407145_00002 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pGCA_002407145_00002 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pGCA_002407145_00002 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pGCA_002407145_00002 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pGCA_002407145_00002 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) HicA_toxin PF07927.12 58 pGCA_002407145_00003 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pGCA_002407145_00004 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 pGCA_002407145_00006 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 pGCA_002407145_00006 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 pGCA_002407145_00006 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) DUF4223 PF13978.6 54 pGCA_002407145_00007 - 97 0.007 16.3 0.0 1 1 1.7e-06 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) nec1 PF10379.9 184 pGCA_002407145_00007 - 97 0.067 12.7 0.0 1 1 1.1e-05 0.099 12.1 0.0 65 105 56 94 35 96 0.75 Virulence protein nec1 Toprim_3 PF13362.6 95 pGCA_002407145_00008 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pGCA_002407145_00008 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pGCA_002407145_00008 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pGCA_002407145_00008 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pGCA_002407145_00008 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold Sds3 PF08598.11 218 pGCA_002407145_00011 - 93 0.041 13.9 5.7 1 1 8e-06 0.048 13.7 5.7 45 97 7 62 5 87 0.82 Sds3-like ESP PF16590.5 91 pGCA_002407145_00011 - 93 0.48 10.7 5.3 1 2 0.036 2.2e+02 2.2 0.8 26 70 3 44 2 49 0.66 Exocrine gland-secreting peptide ESP PF16590.5 91 pGCA_002407145_00011 - 93 0.48 10.7 5.3 2 2 4.4e-05 0.26 11.6 0.5 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF3671 PF12420.8 115 pGCA_002407145_00011 - 93 4.2 7.5 13.8 1 2 0.021 1.3e+02 2.7 3.6 24 49 17 42 3 46 0.72 Protein of unknown function DUF3671 PF12420.8 115 pGCA_002407145_00011 - 93 4.2 7.5 13.8 2 2 7e-05 0.42 10.7 2.6 4 32 59 85 56 93 0.81 Protein of unknown function HTH_46 PF15977.5 68 pGCA_002407145_00012 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_002407145_00012 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pGCA_002407145_00012 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pGCA_002407145_00012 - 183 0.046 13.8 2.1 1 1 1.7e-05 0.063 13.4 1.5 55 131 19 103 9 124 0.70 Stage III sporulation protein AB (spore_III_AB) NLRC4_HD PF17889.1 107 pGCA_002407145_00012 - 183 0.18 12.1 5.5 1 2 0.00027 0.98 9.8 1.8 14 92 6 84 3 98 0.81 NLRC4 helical domain NLRC4_HD PF17889.1 107 pGCA_002407145_00012 - 183 0.18 12.1 5.5 2 2 0.016 56 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 pGCA_002407145_00012 - 183 0.41 10.7 8.1 1 3 0.32 1.1e+03 -0.3 0.1 40 55 12 27 4 54 0.75 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_002407145_00012 - 183 0.41 10.7 8.1 2 3 0.011 39 4.4 0.6 11 46 56 91 51 97 0.87 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pGCA_002407145_00012 - 183 0.41 10.7 8.1 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pGCA_002407145_00012 - 183 0.42 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pGCA_002407145_00012 - 183 0.42 10.9 6.2 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Relaxase PF03432.14 242 pGCA_002407145_00013 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_002407145_00013 - 462 4.7e-10 39.5 7.4 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain DUF3913 PF13052.6 57 pGCA_002407145_00014 - 82 0.046 14.0 0.3 1 1 4.2e-06 0.076 13.3 0.2 29 53 35 58 28 62 0.76 Protein of unknown function (DUF3913) Acetyltransf_7 PF13508.7 76 pGCA_002407145_00015 - 166 0.00015 22.1 0.0 1 1 1e-07 0.00031 21.1 0.0 29 75 12 75 2 76 0.60 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pGCA_002407145_00015 - 166 0.003 17.8 0.0 1 1 2.5e-06 0.0073 16.5 0.0 65 92 14 41 6 74 0.80 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 pGCA_002407145_00015 - 166 0.0052 16.8 0.3 1 1 2.7e-06 0.0082 16.2 0.3 24 67 103 146 86 150 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PHM7_cyt PF14703.6 176 pGCA_002407145_00015 - 166 0.095 12.9 0.2 1 1 5.2e-05 0.15 12.2 0.2 30 85 98 153 86 159 0.81 Cytosolic domain of 10TM putative phosphate transporter Acetyltransf_10 PF13673.7 127 pGCA_002407145_00015 - 166 0.12 12.4 0.0 1 1 0.00011 0.33 10.9 0.0 55 84 13 42 4 84 0.79 Acetyltransferase (GNAT) domain Spc24 PF08286.11 105 pGCA_002407145_00015 - 166 0.39 11.0 3.2 1 2 0.00045 1.3 9.3 0.2 54 89 63 108 31 115 0.67 Spc24 subunit of Ndc80 Spc24 PF08286.11 105 pGCA_002407145_00015 - 166 0.39 11.0 3.2 2 2 0.04 1.2e+02 3.0 0.7 12 43 111 142 101 152 0.69 Spc24 subunit of Ndc80 NYN PF01936.18 147 pGCA_002407145_00016 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 pGCA_002407145_00016 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 pGCA_002407145_00016 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 pGCA_002407145_00016 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) SNF2_N PF00176.23 350 pGCA_002407145_00017 - 1931 3.7e-16 58.8 2.9 1 3 1.3e-19 4.5e-16 58.5 0.1 57 245 1017 1272 935 1313 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_002407145_00017 - 1931 3.7e-16 58.8 2.9 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pGCA_002407145_00017 - 1931 3.7e-16 58.8 2.9 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1875 1923 1845 1924 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pGCA_002407145_00017 - 1931 7.5e-08 32.6 8.9 1 2 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_002407145_00017 - 1931 7.5e-08 32.6 8.9 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1798 1909 1724 1931 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pGCA_002407145_00017 - 1931 9.7e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pGCA_002407145_00017 - 1931 9.7e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pGCA_002407145_00017 - 1931 9.5e-06 25.5 2.0 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 pGCA_002407145_00017 - 1931 9.5e-06 25.5 2.0 2 2 0.12 4.2e+02 0.6 0.0 119 150 1882 1915 1827 1930 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 pGCA_002407145_00017 - 1931 2.5e-05 24.7 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pGCA_002407145_00017 - 1931 2.5e-05 24.7 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 pGCA_002407145_00018 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 pGCA_002407145_00018 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal AAA_31 PF13614.6 177 pGCA_002407145_00019 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pGCA_002407145_00019 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pGCA_002407145_00019 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pGCA_002407145_00019 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pGCA_002407145_00019 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pGCA_002407145_00019 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pGCA_002407145_00020 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pGCA_002407145_00020 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) DUF4044 PF13253.6 33 pGCA_002407145_00021 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pGCA_002407145_00021 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pGCA_002407145_00021 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pGCA_002407145_00021 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pGCA_002407145_00021 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pGCA_002407145_00021 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) LysE PF01810.18 193 pGCA_002407145_00022 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pGCA_002407145_00022 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pGCA_002407145_00022 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pGCA_002407145_00022 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pGCA_002407145_00022 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pGCA_002407145_00022 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pGCA_002407145_00022 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pGCA_002407145_00022 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pGCA_002407145_00022 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain Flp1_like PF16982.5 49 pGCA_002407145_00023 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pGCA_002407145_00023 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain Lip_prot_lig_C PF10437.9 85 pGCA_002407145_00024 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pGCA_002407145_00024 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pGCA_002407145_00024 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pGCA_002407145_00024 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain W2 PF02020.18 79 pGCA_002407145_00025 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pGCA_002407145_00025 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pGCA_002407145_00025 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Sigma70_r4_2 PF08281.12 54 pGCA_002407145_00026 - 150 2.5e-07 30.3 0.0 1 1 6.3e-11 3.8e-07 29.7 0.0 1 54 87 140 87 140 0.97 Sigma-70, region 4 Sigma70_r4 PF04545.16 50 pGCA_002407145_00026 - 150 3.8e-06 26.3 0.0 1 1 1.1e-09 6.3e-06 25.6 0.0 1 48 93 140 93 142 0.93 Sigma-70, region 4 HTH_38 PF13936.6 44 pGCA_002407145_00026 - 150 0.021 14.6 0.0 1 1 6.9e-06 0.041 13.6 0.0 3 33 95 125 93 126 0.92 Helix-turn-helix domain zf-HC2 PF13490.6 35 pGCA_002407145_00027 - 221 3.2e-06 27.3 2.7 1 1 1.2e-09 6.9e-06 26.2 2.7 4 35 11 42 9 42 0.97 Putative zinc-finger Glyco_hydro_100 PF12899.7 435 pGCA_002407145_00027 - 221 0.11 11.1 0.0 1 2 5.6e-05 0.34 9.5 0.0 29 75 3 50 1 72 0.86 Alkaline and neutral invertase Glyco_hydro_100 PF12899.7 435 pGCA_002407145_00027 - 221 0.11 11.1 0.0 2 2 0.094 5.6e+02 -1.1 0.0 265 319 107 163 99 169 0.82 Alkaline and neutral invertase TetR_C_11 PF16859.5 113 pGCA_002407145_00027 - 221 0.15 12.4 0.7 1 1 3.5e-05 0.21 11.9 0.7 12 111 12 110 11 112 0.88 Tetracyclin repressor-like, C-terminal domain APH PF01636.23 240 pGCA_002407145_00028 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pGCA_002407145_00028 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pGCA_002407145_00028 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pGCA_002407145_00028 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family Acetyltransf_1 PF00583.25 117 pGCA_002407145_00029 - 180 3.8e-20 72.3 0.1 1 1 2.3e-23 5.3e-20 71.8 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 pGCA_002407145_00029 - 180 1.2e-13 51.2 0.1 1 1 9.1e-17 2e-13 50.5 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 pGCA_002407145_00029 - 180 2.7e-12 46.7 0.0 1 1 1.6e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 pGCA_002407145_00029 - 180 1.1e-09 38.6 1.1 1 1 6e-13 1.3e-09 38.3 1.1 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 pGCA_002407145_00029 - 180 0.0011 19.7 0.0 1 1 6.1e-07 0.0014 19.4 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 pGCA_002407145_00029 - 180 0.0011 19.0 0.0 1 1 1.2e-06 0.0027 17.8 0.0 6 58 79 130 73 132 0.85 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 pGCA_002407145_00029 - 180 0.015 15.4 0.0 1 1 2.6e-05 0.059 13.5 0.0 21 126 50 154 43 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 pGCA_002407145_00029 - 180 0.038 14.0 0.0 1 1 2.9e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein Adenyl_transf PF04439.12 279 pGCA_002407145_00030 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Peptidase_C15 PF01470.17 202 pGCA_002407145_00031 - 139 2.2e-51 174.9 0.1 1 1 1.4e-55 2.4e-51 174.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase APH PF01636.23 240 pGCA_002407145_00032 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pGCA_002407145_00032 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pGCA_002407145_00032 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pGCA_002407145_00032 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pGCA_002407145_00032 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pGCA_002407145_00032 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase AAA_18 PF13238.6 130 pGCA_002407145_00033 - 181 5.7e-14 52.8 0.0 1 1 1.6e-16 7.6e-14 52.4 0.0 1 124 7 135 7 141 0.86 AAA domain CPT PF07931.12 174 pGCA_002407145_00033 - 181 3e-09 37.0 0.0 1 1 1.2e-11 5.8e-09 36.0 0.0 1 172 4 172 4 174 0.81 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 pGCA_002407145_00033 - 181 6.4e-09 36.1 0.0 1 1 1.9e-11 9.4e-09 35.6 0.0 2 136 7 144 6 146 0.81 AAA domain Zeta_toxin PF06414.12 199 pGCA_002407145_00033 - 181 1.5e-08 34.2 0.0 1 1 7.5e-11 3.6e-08 32.9 0.0 18 162 6 140 2 174 0.78 Zeta toxin AAA PF00004.29 132 pGCA_002407145_00033 - 181 8.7e-06 26.2 0.2 1 2 1.7e-07 8.1e-05 23.1 0.0 2 34 8 41 7 83 0.78 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_002407145_00033 - 181 8.7e-06 26.2 0.2 2 2 0.71 3.5e+02 1.6 0.0 104 131 108 135 56 136 0.84 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 163 pGCA_002407145_00033 - 181 0.0001 22.6 0.1 1 2 8.3e-07 0.0004 20.7 0.0 2 62 7 71 6 85 0.62 AAA domain AAA_28 PF13521.6 163 pGCA_002407145_00033 - 181 0.0001 22.6 0.1 2 2 2.6 1.2e+03 -0.4 0.1 137 137 133 133 91 177 0.52 AAA domain AAA_17 PF13207.6 136 pGCA_002407145_00033 - 181 0.0002 21.8 0.0 1 1 7.1e-07 0.00035 21.0 0.0 1 128 10 131 10 139 0.78 AAA domain AAA_22 PF13401.6 137 pGCA_002407145_00033 - 181 0.00034 20.9 0.0 1 2 2e-06 0.00099 19.4 0.0 4 33 3 32 1 84 0.83 AAA domain AAA_22 PF13401.6 137 pGCA_002407145_00033 - 181 0.00034 20.9 0.0 2 2 3.7 1.8e+03 -0.9 0.0 62 83 121 141 96 178 0.64 AAA domain AAA_14 PF13173.6 131 pGCA_002407145_00033 - 181 0.00043 20.3 0.0 1 1 1.4e-06 0.00066 19.7 0.0 2 127 4 141 3 145 0.72 AAA domain RuvB_N PF05496.12 159 pGCA_002407145_00033 - 181 0.0016 18.2 0.1 1 2 1.2e-05 0.0057 16.4 0.0 36 60 7 31 3 49 0.85 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 pGCA_002407145_00033 - 181 0.0016 18.2 0.1 2 2 3.1 1.5e+03 -1.2 0.0 96 114 111 129 104 167 0.72 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 146 pGCA_002407145_00033 - 181 0.0024 18.2 0.0 1 1 8.6e-06 0.0042 17.4 0.0 9 35 3 29 1 77 0.87 AAA domain ABC_tran PF00005.27 137 pGCA_002407145_00033 - 181 0.0031 18.0 0.1 1 1 8.5e-06 0.0041 17.6 0.1 9 43 2 35 1 133 0.85 ABC transporter AAA_16 PF13191.6 170 pGCA_002407145_00033 - 181 0.0045 17.4 0.0 1 1 1.9e-05 0.0092 16.4 0.0 22 62 2 43 1 76 0.75 AAA ATPase domain KTI12 PF08433.10 272 pGCA_002407145_00033 - 181 0.0048 16.4 0.0 1 2 2e-05 0.0095 15.4 0.0 3 42 6 44 5 87 0.74 Chromatin associated protein KTI12 KTI12 PF08433.10 272 pGCA_002407145_00033 - 181 0.0048 16.4 0.0 2 2 4.5 2.2e+03 -2.2 0.0 263 263 137 137 104 174 0.57 Chromatin associated protein KTI12 DUF2075 PF09848.9 363 pGCA_002407145_00033 - 181 0.005 16.1 0.2 1 1 1.6e-05 0.0077 15.5 0.1 2 29 5 32 4 68 0.84 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.20 158 pGCA_002407145_00033 - 181 0.0076 16.2 0.0 1 2 0.00023 0.11 12.3 0.0 1 79 3 84 3 111 0.64 Adenylylsulphate kinase APS_kinase PF01583.20 158 pGCA_002407145_00033 - 181 0.0076 16.2 0.0 2 2 0.37 1.8e+02 1.9 0.0 44 74 118 148 98 155 0.85 Adenylylsulphate kinase AAA_30 PF13604.6 192 pGCA_002407145_00033 - 181 0.0092 15.7 0.1 1 1 3.2e-05 0.016 15.0 0.1 17 40 3 26 1 39 0.82 AAA domain AAA_24 PF13479.6 197 pGCA_002407145_00033 - 181 0.0096 15.7 0.3 1 1 2e-05 0.0097 15.6 0.3 3 23 5 30 3 171 0.85 AAA domain Ploopntkinase1 PF18748.1 196 pGCA_002407145_00033 - 181 0.0099 15.4 0.0 1 2 0.087 42 3.6 0.0 16 41 3 28 1 41 0.82 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 pGCA_002407145_00033 - 181 0.0099 15.4 0.0 2 2 0.00091 0.44 10.0 0.0 93 164 72 143 54 154 0.81 P-loop Nucleotide Kinase1 T2SSE PF00437.20 273 pGCA_002407145_00033 - 181 0.011 14.8 0.0 1 1 3.4e-05 0.016 14.3 0.0 130 158 5 33 1 75 0.82 Type II/IV secretion system protein ATPase PF06745.13 231 pGCA_002407145_00033 - 181 0.011 15.1 1.2 1 2 3.6e-05 0.017 14.5 0.1 18 37 3 22 1 35 0.87 KaiC ATPase PF06745.13 231 pGCA_002407145_00033 - 181 0.011 15.1 1.2 2 2 2.3 1.1e+03 -1.3 0.1 98 129 123 159 100 175 0.49 KaiC Rad17 PF03215.15 186 pGCA_002407145_00033 - 181 0.012 15.5 0.0 1 2 8.1e-05 0.039 13.9 0.0 45 71 4 30 1 40 0.88 Rad17 P-loop domain Rad17 PF03215.15 186 pGCA_002407145_00033 - 181 0.012 15.5 0.0 2 2 3.2 1.5e+03 -1.1 0.0 113 146 110 145 96 169 0.62 Rad17 P-loop domain SRP54 PF00448.22 196 pGCA_002407145_00033 - 181 0.016 14.8 0.1 1 1 6.3e-05 0.031 13.9 0.1 3 40 6 42 4 49 0.84 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 168 pGCA_002407145_00033 - 181 0.021 14.7 1.0 1 2 0.0001 0.049 13.5 0.3 2 22 7 27 6 35 0.85 NTPase NTPase_1 PF03266.15 168 pGCA_002407145_00033 - 181 0.021 14.7 1.0 2 2 2.1 1e+03 -0.5 0.0 115 136 97 118 58 172 0.59 NTPase dNK PF01712.19 204 pGCA_002407145_00033 - 181 0.034 14.0 0.2 1 2 0.0019 0.94 9.3 0.0 1 52 7 75 7 77 0.66 Deoxynucleoside kinase dNK PF01712.19 204 pGCA_002407145_00033 - 181 0.034 14.0 0.2 2 2 0.19 94 2.8 0.2 118 162 102 143 92 175 0.70 Deoxynucleoside kinase Sigma54_activat PF00158.26 168 pGCA_002407145_00033 - 181 0.035 13.8 0.0 1 1 0.00014 0.066 12.9 0.0 25 68 7 57 1 89 0.76 Sigma-54 interaction domain TIP49 PF06068.13 351 pGCA_002407145_00033 - 181 0.035 13.3 0.2 1 2 0.00023 0.11 11.6 0.0 50 77 4 31 1 46 0.84 TIP49 P-loop domain TIP49 PF06068.13 351 pGCA_002407145_00033 - 181 0.035 13.3 0.2 2 2 1.4 7e+02 -0.8 0.1 148 178 126 156 105 172 0.75 TIP49 P-loop domain ATPase_2 PF01637.18 233 pGCA_002407145_00033 - 181 0.039 13.8 0.3 1 2 0.0045 2.2 8.2 0.0 19 49 3 32 1 50 0.75 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pGCA_002407145_00033 - 181 0.039 13.8 0.3 2 2 0.085 41 4.0 0.1 48 97 102 150 92 179 0.53 ATPase domain predominantly from Archaea DnaB_C PF03796.15 255 pGCA_002407145_00033 - 181 0.06 12.7 0.4 1 2 0.00026 0.13 11.6 0.0 17 47 2 32 1 42 0.83 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pGCA_002407145_00033 - 181 0.06 12.7 0.4 2 2 2.6 1.3e+03 -1.5 0.1 84 91 136 143 98 179 0.39 DnaB-like helicase C terminal domain MKT1_N PF12247.8 90 pGCA_002407145_00033 - 181 0.069 13.5 0.0 1 1 0.00057 0.28 11.6 0.0 14 51 39 74 36 147 0.88 Temperature dependent protein affecting M2 dsRNA replication AAA_11 PF13086.6 261 pGCA_002407145_00033 - 181 0.073 12.8 1.5 1 1 0.00025 0.12 12.1 1.5 16 42 3 29 1 179 0.85 AAA domain PhoH PF02562.16 205 pGCA_002407145_00033 - 181 0.076 12.5 0.1 1 1 0.0003 0.14 11.5 0.1 18 49 3 34 1 36 0.84 PhoH-like protein RNA_helicase PF00910.22 107 pGCA_002407145_00033 - 181 0.089 13.2 0.0 1 1 0.00032 0.16 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase NACHT PF05729.12 166 pGCA_002407145_00033 - 181 0.1 12.5 0.0 1 1 0.00036 0.17 11.8 0.0 1 40 5 45 5 73 0.78 NACHT domain ATP-synt_ab PF00006.25 213 pGCA_002407145_00033 - 181 0.14 11.8 0.0 1 1 0.00028 0.14 11.8 0.0 13 45 3 34 1 178 0.82 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 181 pGCA_002407145_00033 - 181 0.18 11.3 0.7 1 2 0.00058 0.28 10.7 0.1 31 63 2 34 1 46 0.80 P-loop containing dynein motor region AAA_7 PF12775.7 181 pGCA_002407145_00033 - 181 0.18 11.3 0.7 2 2 8.9 4.3e+03 -3.0 0.0 65 82 156 173 132 176 0.64 P-loop containing dynein motor region Cytidylate_kin2 PF13189.6 179 pGCA_002407145_00033 - 181 0.2 11.8 1.5 1 2 0.038 19 5.4 0.1 1 23 6 28 6 36 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 pGCA_002407145_00033 - 181 0.2 11.8 1.5 2 2 0.026 12 5.9 0.1 108 147 99 138 28 143 0.73 Cytidylate kinase-like family DUF4111 PF13427.6 103 pGCA_002407145_00034 - 55 0.0023 18.0 0.0 1 1 1.5e-07 0.0027 17.9 0.0 69 103 13 47 7 47 0.95 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pGCA_002407145_00035 - 218 3.1e-17 62.6 0.0 1 3 0.56 2.5e+03 -1.3 0.0 60 80 3 23 2 25 0.81 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pGCA_002407145_00035 - 218 3.1e-17 62.6 0.0 2 3 1.5 6.8e+03 -2.7 0.0 8 22 52 66 50 72 0.73 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pGCA_002407145_00035 - 218 3.1e-17 62.6 0.0 3 3 3.9e-20 1.8e-16 60.2 0.0 1 67 148 214 148 217 0.97 Domain of unknown function (DUF4111) Polbeta PF18765.1 93 pGCA_002407145_00035 - 218 8.7e-10 38.6 0.0 1 2 8.5e-13 3.8e-09 36.5 0.0 8 74 22 92 11 97 0.77 Polymerase beta, Nucleotidyltransferase Polbeta PF18765.1 93 pGCA_002407145_00035 - 218 8.7e-10 38.6 0.0 2 2 0.33 1.5e+03 -0.6 0.0 17 42 103 134 98 153 0.72 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 95 pGCA_002407145_00035 - 218 2.4e-06 27.8 0.0 1 1 1e-09 4.5e-06 26.9 0.0 14 76 25 89 11 107 0.76 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 199 pGCA_002407145_00035 - 218 0.00015 21.7 0.0 1 1 4.6e-08 0.00021 21.3 0.0 88 138 21 71 2 84 0.86 Adenylate cyclase NT domain PNP_UDP_1 PF01048.20 234 pGCA_002407145_00036 - 256 7.6e-29 100.6 0.0 1 1 4.8e-33 8.7e-29 100.4 0.0 3 219 34 237 32 255 0.86 Phosphorylase superfamily CPSF_A PF03178.15 322 pGCA_002407145_00037 - 95 0.034 13.4 0.0 1 1 9.6e-06 0.034 13.4 0.0 248 286 57 94 23 95 0.80 CPSF A subunit region ATPase PF06745.13 231 pGCA_002407145_00037 - 95 0.048 13.0 0.2 1 1 1.4e-05 0.049 13.0 0.2 73 152 7 87 1 94 0.74 KaiC TipAS PF07739.13 117 pGCA_002407145_00037 - 95 0.061 13.9 1.5 1 1 0.00033 1.2 9.7 1.9 27 96 5 80 1 92 0.80 TipAS antibiotic-recognition domain 3HCDH PF00725.22 97 pGCA_002407145_00037 - 95 0.091 13.4 0.2 1 1 3.8e-05 0.14 12.8 0.2 7 65 36 93 33 95 0.91 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DUF4942 PF13708.6 199 pGCA_002407145_00037 - 95 0.15 12.0 0.0 1 1 7.1e-05 0.26 11.3 0.0 22 74 36 87 33 93 0.88 Domain of unknown function (DUF4942) GTP_EFTU PF00009.27 194 pGCA_002407145_00039 - 639 5.6e-59 198.9 0.3 1 1 3.9e-62 7.8e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pGCA_002407145_00039 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pGCA_002407145_00039 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pGCA_002407145_00039 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pGCA_002407145_00039 - 639 2.1e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pGCA_002407145_00039 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pGCA_002407145_00039 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pGCA_002407145_00039 - 639 0.0091 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pGCA_002407145_00039 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pGCA_002407145_00039 - 639 0.05 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family APH PF01636.23 240 pGCA_002407145_00040 - 306 5.8e-22 78.8 0.0 1 1 2.1e-25 7.5e-22 78.4 0.0 13 230 39 256 27 265 0.75 Phosphotransferase enzyme family RIO1 PF01163.22 188 pGCA_002407145_00040 - 306 2.1e-06 27.5 0.1 1 2 0.00064 2.3 7.8 0.0 47 111 52 117 46 131 0.76 RIO1 family RIO1 PF01163.22 188 pGCA_002407145_00040 - 306 2.1e-06 27.5 0.1 2 2 5.8e-07 0.0021 17.7 0.1 97 154 165 223 149 253 0.81 RIO1 family DUF1679 PF07914.11 414 pGCA_002407145_00040 - 306 0.00034 19.6 0.1 1 2 1 3.7e+03 -3.6 0.0 113 142 60 89 55 92 0.78 Protein of unknown function (DUF1679) DUF1679 PF07914.11 414 pGCA_002407145_00040 - 306 0.00034 19.6 0.1 2 2 1.6e-07 0.00056 18.9 0.0 213 318 134 238 102 253 0.70 Protein of unknown function (DUF1679) Choline_kinase PF01633.20 213 pGCA_002407145_00040 - 306 0.00076 19.1 0.2 1 2 5.9e-07 0.0021 17.7 0.1 21 171 61 218 46 219 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 pGCA_002407145_00040 - 306 0.00076 19.1 0.2 2 2 0.51 1.8e+03 -1.7 0.0 6 25 249 268 247 271 0.89 Choline/ethanolamine kinase EcKinase PF02958.20 294 pGCA_002407145_00040 - 306 0.0095 15.3 0.1 1 1 3.7e-06 0.013 14.8 0.1 189 270 162 243 121 262 0.65 Ecdysteroid kinase PcfJ PF14284.6 144 pGCA_002407145_00042 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pGCA_002407145_00042 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain Topoisom_bac PF01131.20 413 pGCA_002407145_00043 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pGCA_002407145_00043 - 730 6.3e-12 45.6 2.6 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pGCA_002407145_00043 - 730 6.3e-12 45.6 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pGCA_002407145_00043 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pGCA_002407145_00043 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pGCA_002407145_00043 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_002407145_00043 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pGCA_002407145_00043 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pGCA_002407145_00043 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pGCA_002407145_00043 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pGCA_002407145_00043 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pGCA_002407145_00043 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pGCA_002407145_00043 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pGCA_002407145_00043 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pGCA_002407145_00043 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pGCA_002407145_00043 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pGCA_002407145_00043 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pGCA_002407145_00043 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pGCA_002407145_00043 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pGCA_002407145_00043 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pGCA_002407145_00043 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pGCA_002407145_00043 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_002407145_00043 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pGCA_002407145_00043 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pGCA_002407145_00043 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pGCA_002407145_00043 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pGCA_002407145_00043 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pGCA_002407145_00043 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pGCA_002407145_00043 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pGCA_002407145_00043 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pGCA_002407145_00043 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pGCA_002407145_00043 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pGCA_002407145_00043 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pGCA_002407145_00043 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type DUF1461 PF07314.11 189 pGCA_002407145_00044 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) CdhD PF03599.16 386 pGCA_002407145_00045 - 246 0.002 16.9 0.0 1 1 5.3e-07 0.0031 16.3 0.0 269 358 39 127 30 136 0.86 CO dehydrogenase/acetyl-CoA synthase delta subunit Pox_RNA_pol PF03293.14 160 pGCA_002407145_00045 - 246 0.012 15.3 0.9 1 1 4.5e-06 0.027 14.2 0.9 35 158 20 138 7 140 0.83 Poxvirus DNA-directed RNA polymerase, 18 kD subunit Redoxin PF08534.10 147 pGCA_002407145_00045 - 246 0.059 13.1 0.5 1 2 0.079 4.7e+02 0.4 0.0 117 146 49 76 31 77 0.79 Redoxin Redoxin PF08534.10 147 pGCA_002407145_00045 - 246 0.059 13.1 0.5 2 2 7.9e-05 0.47 10.2 0.1 49 76 184 213 178 230 0.79 Redoxin PRELI PF04707.14 157 pGCA_002407145_00046 - 265 0.044 13.6 0.3 1 2 0.26 2.4e+03 -1.8 0.1 107 133 23 45 5 72 0.49 PRELI-like family PRELI PF04707.14 157 pGCA_002407145_00046 - 265 0.044 13.6 0.3 2 2 4.9e-06 0.044 13.6 0.3 96 155 83 147 78 149 0.87 PRELI-like family TACC_C PF05010.14 201 pGCA_002407145_00046 - 265 0.92 9.3 9.3 1 2 0.00027 2.4 7.9 8.2 14 124 2 111 1 135 0.79 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 pGCA_002407145_00046 - 265 0.92 9.3 9.3 2 2 0.035 3.2e+02 1.0 1.1 8 45 100 139 94 148 0.70 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TrbM PF07424.11 156 pGCA_002407145_00047 - 252 4.1e-38 130.8 2.0 1 1 2.9e-42 5.3e-38 130.4 2.0 1 154 25 190 25 192 0.88 TrbM Cag12 PF13117.6 97 pGCA_002407145_00048 - 143 1.4e-16 60.7 0.3 1 1 2.1e-20 1.9e-16 60.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pGCA_002407145_00048 - 143 0.06 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) T4SS-DNA_transf PF02534.14 469 pGCA_002407145_00049 - 603 8.3e-104 348.0 0.1 1 1 3.2e-107 1.1e-103 347.5 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_002407145_00049 - 603 3.5e-24 85.2 0.0 1 1 1.9e-27 6.8e-24 84.3 0.0 2 125 406 528 405 529 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pGCA_002407145_00049 - 603 3.2e-15 55.9 0.0 1 2 2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_002407145_00049 - 603 3.2e-15 55.9 0.0 2 2 1.6e-13 5.8e-10 38.6 0.0 187 369 347 531 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 pGCA_002407145_00049 - 603 0.17 11.9 0.1 1 1 8.3e-05 0.3 11.2 0.1 37 93 9 87 3 100 0.78 Putative Actinobacterial Holin-X, holin superfamily III ECF_trnsprt PF12822.7 172 pGCA_002407145_00049 - 603 1.2 9.2 8.3 1 1 0.00056 2 8.5 8.3 101 168 4 79 1 81 0.85 ECF transporter, substrate-specific component Carbam_trans_N PF02543.15 338 pGCA_002407145_00050 - 267 0.053 13.2 0.0 1 1 4.1e-06 0.073 12.7 0.0 195 313 117 236 74 243 0.86 Carbamoyltransferase N-terminus T2SSE PF00437.20 273 pGCA_002407145_00051 - 339 6.9e-55 186.0 0.0 1 1 1.4e-57 8.1e-55 185.8 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pGCA_002407145_00051 - 339 7.2e-05 23.3 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_002407145_00051 - 339 0.00012 21.6 0.0 1 1 3.2e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pGCA_002407145_00051 - 339 0.00028 20.4 0.0 1 1 9.2e-07 0.00052 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pGCA_002407145_00051 - 339 0.0014 18.9 0.0 1 1 4.7e-06 0.0026 18.0 0.0 5 56 160 221 155 244 0.72 AAA domain DEAD PF00270.29 176 pGCA_002407145_00051 - 339 0.0014 18.4 0.0 1 1 4.1e-06 0.0023 17.7 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pGCA_002407145_00051 - 339 0.0026 17.5 0.2 1 1 9.7e-06 0.0054 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pGCA_002407145_00051 - 339 0.0035 17.3 0.0 1 1 1.3e-05 0.0073 16.3 0.0 10 45 152 186 141 194 0.74 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pGCA_002407145_00051 - 339 0.0055 15.7 0.0 1 1 1.4e-05 0.0079 15.1 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pGCA_002407145_00051 - 339 0.0073 16.2 0.0 1 1 2.3e-05 0.013 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pGCA_002407145_00051 - 339 0.0088 15.4 0.0 1 1 2.6e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pGCA_002407145_00051 - 339 0.0091 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 305 0.85 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pGCA_002407145_00051 - 339 0.018 15.1 0.0 1 1 6.4e-05 0.036 14.2 0.0 27 48 164 185 142 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 pGCA_002407145_00051 - 339 0.021 13.8 0.0 1 1 6.2e-05 0.035 13.0 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 pGCA_002407145_00051 - 339 0.023 14.7 0.0 1 1 9.6e-05 0.054 13.5 0.0 5 50 147 186 135 248 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 pGCA_002407145_00051 - 339 0.024 14.4 0.0 1 1 9.2e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 pGCA_002407145_00051 - 339 0.026 14.2 0.0 1 1 9.8e-05 0.055 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pGCA_002407145_00051 - 339 0.031 13.8 0.0 1 1 0.00011 0.061 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 pGCA_002407145_00051 - 339 0.035 14.2 0.1 1 1 0.00019 0.11 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 pGCA_002407145_00051 - 339 0.04 13.7 0.0 1 1 0.00011 0.064 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 pGCA_002407145_00051 - 339 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 pGCA_002407145_00051 - 339 0.046 13.0 0.0 1 1 0.00015 0.082 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin PRK PF00485.18 197 pGCA_002407145_00051 - 339 0.058 13.1 0.0 1 1 0.0002 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pGCA_002407145_00051 - 339 0.065 11.9 0.0 1 1 0.00016 0.092 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pGCA_002407145_00051 - 339 0.075 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pGCA_002407145_00051 - 339 0.089 12.7 0.0 1 1 0.00036 0.2 11.5 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pGCA_002407145_00051 - 339 0.089 12.7 0.4 1 1 0.00039 0.22 11.5 0.3 71 102 149 179 129 220 0.81 Microtubule binding NTPase_1 PF03266.15 168 pGCA_002407145_00051 - 339 0.11 12.4 0.1 1 1 0.00042 0.23 11.3 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 pGCA_002407145_00051 - 339 0.12 13.0 0.0 1 2 8.1 4.6e+03 -1.9 0.0 25 60 14 49 4 61 0.76 AAA domain AAA_18 PF13238.6 130 pGCA_002407145_00051 - 339 0.12 13.0 0.0 2 2 0.0007 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 pGCA_002407145_00051 - 339 0.15 11.7 0.0 1 1 0.00043 0.24 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pGCA_002407145_00051 - 339 0.15 11.7 0.0 1 1 0.00044 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pGCA_002407145_00051 - 339 0.38 11.2 4.1 1 2 2.7 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 pGCA_002407145_00051 - 339 0.38 11.2 4.1 2 2 0.00068 0.38 11.2 1.3 22 37 163 178 160 184 0.87 AAA domain TrbI PF03743.14 187 pGCA_002407145_00052 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.5e+03 -3.4 0.3 136 154 141 166 120 174 0.53 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pGCA_002407145_00052 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pGCA_002407145_00052 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease CagX PF03524.15 211 pGCA_002407145_00053 - 298 9.6e-56 188.8 1.9 1 1 8.4e-60 1.5e-55 188.2 1.9 2 211 32 273 31 273 0.92 Conjugal transfer protein VirB8 PF04335.13 214 pGCA_002407145_00054 - 219 1.6e-52 178.5 0.5 1 1 2e-56 1.8e-52 178.3 0.5 4 214 10 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pGCA_002407145_00054 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C La_HTH_kDCL PF18177.1 90 pGCA_002407145_00055 - 54 0.2 12.0 0.0 1 1 1.2e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain TrbL PF04610.14 215 pGCA_002407145_00056 - 331 2.8e-30 105.7 32.6 1 2 6.2e-34 2.8e-30 105.7 32.6 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pGCA_002407145_00056 - 331 2.8e-30 105.7 32.6 2 2 0.59 2.6e+03 -2.1 0.1 58 88 289 325 260 330 0.47 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pGCA_002407145_00056 - 331 0.072 12.9 0.7 1 2 0.95 4.2e+03 -2.4 0.1 39 50 70 81 61 108 0.63 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pGCA_002407145_00056 - 331 0.072 12.9 0.7 2 2 5e-05 0.23 11.3 0.1 37 81 243 287 222 298 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 pGCA_002407145_00056 - 331 0.17 11.9 0.0 1 1 6.8e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) AIM3 PF17096.5 88 pGCA_002407145_00056 - 331 0.3 12.1 6.0 1 1 0.00013 0.57 11.1 6.0 9 38 299 328 284 330 0.89 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 pGCA_002407145_00057 - 329 1.7e-28 100.4 13.1 1 1 5.2e-32 2.3e-28 99.9 13.1 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pGCA_002407145_00057 - 329 0.0035 17.5 0.5 1 2 0.27 1.2e+03 -0.3 0.0 30 54 134 158 120 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pGCA_002407145_00057 - 329 0.0035 17.5 0.5 2 2 4.7e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 pGCA_002407145_00057 - 329 0.018 15.7 0.8 1 2 1.3 6e+03 -2.1 0.0 55 70 124 139 101 163 0.57 von Willebrand factor type A domain VWA_2 PF13519.6 107 pGCA_002407145_00057 - 329 0.018 15.7 0.8 2 2 8.6e-06 0.039 14.6 0.2 31 84 208 270 197 295 0.83 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 pGCA_002407145_00057 - 329 0.48 11.1 11.5 1 2 0.042 1.9e+02 2.7 0.8 49 135 108 145 95 182 0.47 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pGCA_002407145_00057 - 329 0.48 11.1 11.5 2 2 8.9e-05 0.4 11.4 4.6 49 117 225 307 205 328 0.69 Apoptosis antagonizing transcription factor IF2_N PF04760.15 54 pGCA_002407145_00058 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pGCA_002407145_00058 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pGCA_002407145_00058 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pGCA_002407145_00058 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pGCA_002407145_00058 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pGCA_002407145_00058 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pGCA_002407145_00058 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 pGCA_002407145_00059 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family PBECR2 PF18810.1 119 pGCA_002407145_00060 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 Phage_pRha PF09669.10 88 pGCA_002407145_00061 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 pGCA_002407145_00061 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 pGCA_002407145_00061 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) CagE_TrbE_VirB PF03135.14 206 pGCA_002407145_00062 - 922 3.1e-51 174.4 0.4 1 1 7.9e-55 7.1e-51 173.2 0.4 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pGCA_002407145_00062 - 922 3.6e-21 75.2 0.8 1 1 6.9e-25 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein TrbC PF04956.13 99 pGCA_002407145_00063 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pGCA_002407145_00063 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pGCA_002407145_00065 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pGCA_002407145_00065 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 Activator-TraM PF11657.8 142 pGCA_002407145_00066 - 131 1.8e-05 24.6 4.4 1 1 1.2e-08 2.6e-05 24.1 4.4 6 112 5 116 2 120 0.77 Transcriptional activator TraM Use1 PF09753.9 247 pGCA_002407145_00066 - 131 0.0028 17.4 0.6 1 1 1.7e-06 0.0038 17.0 0.6 187 244 69 127 63 130 0.92 Membrane fusion protein Use1 DUF4199 PF13858.6 168 pGCA_002407145_00066 - 131 0.0044 17.5 1.3 1 1 2.5e-06 0.0057 17.1 1.3 99 165 56 130 42 131 0.72 Protein of unknown function (DUF4199) EMP24_GP25L PF01105.24 182 pGCA_002407145_00066 - 131 0.011 15.7 0.6 1 1 5.3e-06 0.012 15.6 0.6 119 169 71 121 11 128 0.76 emp24/gp25L/p24 family/GOLD ETRAMP PF09716.10 83 pGCA_002407145_00066 - 131 0.017 15.2 5.0 1 1 7.7e-06 0.017 15.1 4.2 33 77 87 131 27 131 0.84 Malarial early transcribed membrane protein (ETRAMP) Arc_PepC_II PF06847.11 92 pGCA_002407145_00066 - 131 0.025 15.1 2.2 1 2 0.83 1.9e+03 -0.5 0.0 14 27 7 20 2 24 0.78 Archaeal Peptidase A24 C-terminus Type II Arc_PepC_II PF06847.11 92 pGCA_002407145_00066 - 131 0.025 15.1 2.2 2 2 1.8e-05 0.039 14.5 0.9 2 89 41 131 40 131 0.80 Archaeal Peptidase A24 C-terminus Type II DUF2207 PF09972.9 492 pGCA_002407145_00066 - 131 0.027 13.3 3.2 1 1 1.3e-05 0.029 13.1 3.2 323 401 42 129 3 131 0.63 Predicted membrane protein (DUF2207) DUF2951 PF11166.8 98 pGCA_002407145_00066 - 131 0.078 13.2 6.3 1 1 3.3e-05 0.074 13.3 5.3 23 88 57 123 38 131 0.61 Protein of unknown function (DUF2951) AAA_31 PF13614.6 177 pGCA_002407145_00067 - 228 2.4e-23 83.0 2.4 1 3 2.7e-18 2.2e-15 57.0 0.1 3 53 2 52 1 64 0.87 AAA domain AAA_31 PF13614.6 177 pGCA_002407145_00067 - 228 2.4e-23 83.0 2.4 2 3 6.6e-09 5.4e-06 26.4 0.2 93 175 55 136 47 138 0.90 AAA domain AAA_31 PF13614.6 177 pGCA_002407145_00067 - 228 2.4e-23 83.0 2.4 3 3 3.7 3.1e+03 -2.1 0.0 156 170 154 168 141 199 0.65 AAA domain CbiA PF01656.23 128 pGCA_002407145_00067 - 228 6.5e-17 61.8 0.2 1 1 1.1e-19 9.2e-17 61.3 0.2 1 126 3 195 3 197 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 262 pGCA_002407145_00067 - 228 7e-13 48.5 0.3 1 2 1.8e-12 1.4e-09 37.6 0.2 2 140 2 120 1 125 0.82 ATPase MipZ MipZ PF09140.11 262 pGCA_002407145_00067 - 228 7e-13 48.5 0.3 2 2 0.35 2.8e+02 0.6 0.0 128 174 131 177 125 202 0.78 ATPase MipZ VirC1 PF07015.11 231 pGCA_002407145_00067 - 228 1.2e-10 41.1 0.1 1 1 2.7e-13 2.2e-10 40.2 0.1 4 150 3 145 1 204 0.76 VirC1 protein ArsA_ATPase PF02374.15 305 pGCA_002407145_00067 - 228 5e-08 32.5 0.7 1 1 1.1e-10 8.9e-08 31.7 0.2 5 109 5 112 1 141 0.81 Anion-transporting ATPase ParA PF10609.9 246 pGCA_002407145_00067 - 228 4.6e-06 26.3 0.0 1 1 9.8e-09 8e-06 25.5 0.0 5 41 2 38 1 57 0.95 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 271 pGCA_002407145_00067 - 228 8.5e-06 25.4 0.2 1 2 3.4e-08 2.8e-05 23.7 0.0 6 47 7 46 1 92 0.76 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_NifH PF00142.18 271 pGCA_002407145_00067 - 228 8.5e-06 25.4 0.2 2 2 1.3 1.1e+03 -1.1 0.0 209 209 176 176 136 224 0.52 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 196 pGCA_002407145_00067 - 228 1.5e-05 24.7 0.1 1 2 4.9e-08 4e-05 23.3 0.0 11 99 11 95 2 141 0.83 SRP54-type protein, GTPase domain SRP54 PF00448.22 196 pGCA_002407145_00067 - 228 1.5e-05 24.7 0.1 2 2 4.4 3.6e+03 -2.6 0.0 102 116 152 166 144 191 0.61 SRP54-type protein, GTPase domain CBP_BcsQ PF06564.12 234 pGCA_002407145_00067 - 228 7.1e-05 22.4 0.0 1 2 7.3e-07 0.00059 19.4 0.0 10 42 9 41 1 56 0.86 Cellulose biosynthesis protein BcsQ CBP_BcsQ PF06564.12 234 pGCA_002407145_00067 - 228 7.1e-05 22.4 0.0 2 2 0.37 3e+02 0.7 0.0 104 142 68 106 51 134 0.80 Cellulose biosynthesis protein BcsQ MobB PF03205.14 133 pGCA_002407145_00067 - 228 0.0012 18.7 0.0 1 2 0.0013 1.1 9.2 0.0 2 34 3 36 2 45 0.80 Molybdopterin guanine dinucleotide synthesis protein B MobB PF03205.14 133 pGCA_002407145_00067 - 228 0.0012 18.7 0.0 2 2 0.0045 3.7 7.5 0.0 25 60 64 103 53 142 0.73 Molybdopterin guanine dinucleotide synthesis protein B CLP1_P PF16575.5 188 pGCA_002407145_00067 - 228 0.0013 18.6 0.1 1 1 4.5e-06 0.0036 17.1 0.0 4 35 11 42 8 55 0.93 mRNA cleavage and polyadenylation factor CLP1 P-loop Thymidylate_kin PF02223.17 185 pGCA_002407145_00067 - 228 0.0086 15.8 0.2 1 2 0.0003 0.25 11.0 0.0 6 45 11 52 10 62 0.78 Thymidylate kinase Thymidylate_kin PF02223.17 185 pGCA_002407145_00067 - 228 0.0086 15.8 0.2 2 2 0.13 1.1e+02 2.4 0.4 131 168 186 225 152 228 0.73 Thymidylate kinase AAA_24 PF13479.6 197 pGCA_002407145_00067 - 228 0.014 15.1 0.2 1 2 3.8e-05 0.031 14.0 0.1 11 74 10 88 9 131 0.71 AAA domain AAA_24 PF13479.6 197 pGCA_002407145_00067 - 228 0.014 15.1 0.2 2 2 4.5 3.7e+03 -2.6 0.0 48 48 193 193 151 217 0.54 AAA domain AAA_14 PF13173.6 131 pGCA_002407145_00067 - 228 0.016 15.2 0.4 1 2 7.8e-05 0.064 13.3 0.0 13 83 12 83 10 110 0.72 AAA domain AAA_14 PF13173.6 131 pGCA_002407145_00067 - 228 0.016 15.2 0.4 2 2 2.3 1.8e+03 -1.1 0.1 38 59 200 221 175 226 0.65 AAA domain AAA_18 PF13238.6 130 pGCA_002407145_00067 - 228 0.029 14.9 1.7 1 2 0.00011 0.092 13.3 0.1 8 29 11 33 5 129 0.64 AAA domain AAA_18 PF13238.6 130 pGCA_002407145_00067 - 228 0.029 14.9 1.7 2 2 1.1 8.9e+02 0.4 0.3 15 67 152 214 150 225 0.66 AAA domain Zeta_toxin PF06414.12 199 pGCA_002407145_00067 - 228 0.042 13.1 0.1 1 2 0.00024 0.19 10.9 0.0 25 55 10 41 2 97 0.89 Zeta toxin Zeta_toxin PF06414.12 199 pGCA_002407145_00067 - 228 0.042 13.1 0.1 2 2 0.59 4.8e+02 -0.1 0.0 151 184 143 176 129 196 0.81 Zeta toxin DUF87 PF01935.17 227 pGCA_002407145_00067 - 228 0.047 13.8 1.5 1 2 0.0013 1.1 9.4 0.0 33 60 11 37 9 39 0.94 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_002407145_00067 - 228 0.047 13.8 1.5 2 2 0.081 66 3.5 0.4 46 145 72 183 63 225 0.62 Helicase HerA, central domain AAA_25 PF13481.6 194 pGCA_002407145_00067 - 228 0.05 13.2 0.0 1 1 0.00012 0.095 12.3 0.0 41 64 9 33 3 52 0.82 AAA domain APS_kinase PF01583.20 158 pGCA_002407145_00067 - 228 0.063 13.2 0.0 1 1 0.0002 0.17 11.8 0.0 11 39 10 38 3 50 0.92 Adenylylsulphate kinase AAA_33 PF13671.6 143 pGCA_002407145_00067 - 228 0.076 13.2 0.0 1 1 0.0002 0.16 12.1 0.0 9 87 11 97 9 104 0.69 AAA domain MeaB PF03308.16 267 pGCA_002407145_00067 - 228 0.15 11.0 0.1 1 2 0.0012 1 8.3 0.0 39 69 11 41 5 55 0.91 Methylmalonyl Co-A mutase-associated GTPase MeaB MeaB PF03308.16 267 pGCA_002407145_00067 - 228 0.15 11.0 0.1 2 2 0.33 2.7e+02 0.3 0.0 121 149 79 107 60 148 0.76 Methylmalonyl Co-A mutase-associated GTPase MeaB ResIII PF04851.15 171 pGCA_002407145_00067 - 228 0.19 11.7 0.5 1 3 0.0029 2.4 8.1 0.0 33 60 10 35 4 39 0.86 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_002407145_00067 - 228 0.19 11.7 0.5 2 3 0.75 6.1e+02 0.3 0.0 98 139 49 86 35 107 0.77 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pGCA_002407145_00067 - 228 0.19 11.7 0.5 3 3 1.9 1.6e+03 -1.0 0.1 85 85 178 178 122 225 0.57 Type III restriction enzyme, res subunit RHH_7 PF16777.5 74 pGCA_002407145_00068 - 74 0.0075 16.6 0.3 1 1 1.5e-06 0.009 16.4 0.3 7 65 13 70 5 73 0.77 Transcriptional regulator, RHH-like, CopG CheX PF13690.6 94 pGCA_002407145_00068 - 74 0.023 14.9 0.1 1 1 4.2e-06 0.025 14.7 0.1 32 61 8 39 3 67 0.75 Chemotaxis phosphatase CheX ParD PF09386.10 80 pGCA_002407145_00068 - 74 0.11 12.9 0.0 1 1 2.4e-05 0.15 12.5 0.0 3 37 38 72 36 74 0.92 Antitoxin ParD Relaxase PF03432.14 242 pGCA_002407145_00070 - 718 2.6e-38 132.0 18.8 1 4 4.3e-42 2.6e-38 132.0 18.8 1 241 12 269 12 270 0.89 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_002407145_00070 - 718 2.6e-38 132.0 18.8 2 4 1.4 8.5e+03 -3.9 11.8 127 230 260 368 258 373 0.69 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_002407145_00070 - 718 2.6e-38 132.0 18.8 3 4 0.048 2.9e+02 0.9 4.4 127 205 478 555 467 585 0.51 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pGCA_002407145_00070 - 718 2.6e-38 132.0 18.8 4 4 0.85 5.1e+03 -3.2 0.9 183 207 667 691 607 706 0.49 Relaxase/Mobilisation nuclease domain LPD7 PF18821.1 94 pGCA_002407145_00070 - 718 8.5e-12 45.0 0.0 1 1 6.9e-15 4.1e-11 42.9 0.0 7 92 422 509 415 511 0.89 Large polyvalent protein-associated domain 7 Fucose_iso_N1 PF07881.12 169 pGCA_002407145_00070 - 718 9.9 6.0 6.5 1 3 0.58 3.4e+03 -2.3 0.1 22 54 94 126 59 128 0.74 L-fucose isomerase, first N-terminal domain Fucose_iso_N1 PF07881.12 169 pGCA_002407145_00070 - 718 9.9 6.0 6.5 2 3 0.016 96 2.8 0.4 8 43 497 534 496 546 0.75 L-fucose isomerase, first N-terminal domain Fucose_iso_N1 PF07881.12 169 pGCA_002407145_00070 - 718 9.9 6.0 6.5 3 3 0.0023 14 5.5 0.1 20 55 677 712 669 715 0.90 L-fucose isomerase, first N-terminal domain DUF3452 PF11934.8 137 pGCA_002407145_00072 - 107 0.014 14.9 4.4 1 1 9.5e-07 0.017 14.7 4.4 23 88 8 73 4 95 0.78 Domain of unknown function (DUF3452) PIN PF01850.21 122 pGCA_002407145_00075 - 137 1.6e-15 57.7 0.1 1 1 4.4e-19 2e-15 57.4 0.1 1 119 4 125 4 127 0.94 PIN domain PIN_3 PF13470.6 116 pGCA_002407145_00075 - 137 0.00017 22.3 0.0 1 1 4.6e-08 0.00021 22.0 0.0 1 52 3 57 3 121 0.73 PIN domain PIN_12 PF16289.5 171 pGCA_002407145_00075 - 137 0.0012 19.4 4.5 1 1 2.6e-07 0.0012 19.4 4.5 1 39 4 43 4 105 0.83 PIN domain DHHA2 PF02833.14 143 pGCA_002407145_00075 - 137 0.03 14.5 0.0 1 1 1.6e-05 0.073 13.3 0.0 24 67 72 110 22 122 0.89 DHHA2 domain T2SSE PF00437.20 273 pGCA_002407145_00076 - 312 1.6e-75 253.7 0.3 1 1 3.3e-78 2e-75 253.3 0.3 8 270 24 285 21 288 0.98 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.18 243 pGCA_002407145_00076 - 312 2.8e-05 23.6 0.1 1 2 1.5 9.1e+02 -1.0 0.0 134 159 6 31 1 40 0.80 FtsK/SpoIIIE family FtsK_SpoIIIE PF01580.18 243 pGCA_002407145_00076 - 312 2.8e-05 23.6 0.1 2 2 2.2e-07 0.00014 21.3 0.0 32 63 136 167 117 208 0.77 FtsK/SpoIIIE family DEAD PF00270.29 176 pGCA_002407145_00076 - 312 3e-05 23.8 0.1 1 1 8.5e-08 5.2e-05 23.1 0.1 2 70 130 196 129 240 0.78 DEAD/DEAH box helicase TrwB_AAD_bind PF10412.9 386 pGCA_002407145_00076 - 312 0.00014 20.9 0.4 1 2 5.8e-07 0.00036 19.6 0.1 10 53 138 183 132 196 0.84 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pGCA_002407145_00076 - 312 0.00014 20.9 0.4 2 2 1.9 1.2e+03 -1.9 0.0 28 54 200 226 196 230 0.83 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 pGCA_002407145_00076 - 312 0.0004 20.4 0.0 1 1 1.2e-06 0.00074 19.6 0.0 4 67 128 186 125 240 0.87 Type III restriction enzyme, res subunit AAA_19 PF13245.6 146 pGCA_002407145_00076 - 312 0.00053 20.3 0.3 1 1 2.2e-06 0.0014 19.0 0.3 6 78 138 268 132 306 0.61 AAA domain DUF87 PF01935.17 227 pGCA_002407145_00076 - 312 0.001 19.2 0.0 1 1 3.3e-06 0.002 18.2 0.0 25 58 145 179 119 216 0.90 Helicase HerA, central domain IstB_IS21 PF01695.17 178 pGCA_002407145_00076 - 312 0.0013 18.5 0.0 1 1 3.9e-06 0.0024 17.6 0.0 23 111 121 206 110 209 0.72 IstB-like ATP binding protein AAA_30 PF13604.6 192 pGCA_002407145_00076 - 312 0.0033 17.2 0.0 1 1 9.6e-06 0.006 16.3 0.0 2 45 128 170 127 229 0.78 AAA domain ATPase PF06745.13 231 pGCA_002407145_00076 - 312 0.0039 16.6 0.0 1 1 1.3e-05 0.0081 15.5 0.0 12 46 136 169 114 197 0.78 KaiC AAA_7 PF12775.7 181 pGCA_002407145_00076 - 312 0.0047 16.5 0.1 1 1 1.9e-05 0.012 15.2 0.1 25 59 135 169 125 203 0.77 P-loop containing dynein motor region ABC_ATPase PF09818.9 448 pGCA_002407145_00076 - 312 0.011 14.6 0.1 1 1 2.7e-05 0.016 14.0 0.1 218 301 116 199 105 208 0.84 Predicted ATPase of the ABC class NACHT PF05729.12 166 pGCA_002407145_00076 - 312 0.013 15.4 0.0 1 2 5.8e-05 0.036 14.0 0.0 3 48 146 188 144 202 0.83 NACHT domain NACHT PF05729.12 166 pGCA_002407145_00076 - 312 0.013 15.4 0.0 2 2 8.5 5.3e+03 -2.8 0.0 130 154 253 277 226 288 0.60 NACHT domain AAA_29 PF13555.6 61 pGCA_002407145_00076 - 312 0.027 14.2 1.2 1 2 8.1 5e+03 -2.7 0.2 36 42 69 75 63 78 0.71 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pGCA_002407145_00076 - 312 0.027 14.2 1.2 2 2 5.9e-05 0.036 13.8 0.0 20 42 141 163 131 175 0.82 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 114 pGCA_002407145_00076 - 312 0.029 14.5 0.4 1 2 0.00019 0.12 12.5 0.1 2 28 146 172 145 198 0.87 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 pGCA_002407145_00076 - 312 0.029 14.5 0.4 2 2 3.2 2e+03 -1.1 0.0 77 100 279 299 244 311 0.52 50S ribosome-binding GTPase AAA_24 PF13479.6 197 pGCA_002407145_00076 - 312 0.033 13.9 0.0 1 2 0.00093 0.57 9.9 0.0 3 22 144 163 142 191 0.82 AAA domain AAA_24 PF13479.6 197 pGCA_002407145_00076 - 312 0.033 13.9 0.0 2 2 0.28 1.7e+02 1.8 0.0 145 175 255 289 233 309 0.71 AAA domain TsaE PF02367.17 125 pGCA_002407145_00076 - 312 0.033 14.2 0.1 1 1 0.00016 0.096 12.7 0.0 13 43 139 167 124 177 0.77 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 199 pGCA_002407145_00076 - 312 0.038 13.3 0.0 1 1 0.00012 0.075 12.3 0.0 18 51 145 180 131 212 0.81 Zeta toxin RNA_helicase PF00910.22 107 pGCA_002407145_00076 - 312 0.041 14.3 0.0 1 2 1.5 9.5e+02 0.2 0.0 36 72 33 67 8 81 0.73 RNA helicase RNA_helicase PF00910.22 107 pGCA_002407145_00076 - 312 0.041 14.3 0.0 2 2 0.00071 0.44 11.0 0.0 1 24 146 169 146 197 0.82 RNA helicase Sigma54_activat PF00158.26 168 pGCA_002407145_00076 - 312 0.041 13.6 0.0 1 1 0.00012 0.077 12.7 0.0 14 45 135 166 124 198 0.73 Sigma-54 interaction domain RsgA_GTPase PF03193.16 167 pGCA_002407145_00076 - 312 0.042 13.8 0.5 1 2 0.00028 0.17 11.7 0.0 85 123 128 167 108 180 0.81 RsgA GTPase RsgA_GTPase PF03193.16 167 pGCA_002407145_00076 - 312 0.042 13.8 0.5 2 2 1.7 1e+03 -0.5 0.1 58 97 261 300 255 305 0.71 RsgA GTPase ABC_tran PF00005.27 137 pGCA_002407145_00076 - 312 0.046 14.2 0.5 1 1 0.0002 0.13 12.8 0.4 8 35 140 167 136 194 0.82 ABC transporter G-alpha PF00503.20 354 pGCA_002407145_00076 - 312 0.055 12.6 0.1 1 1 0.00012 0.074 12.2 0.1 17 80 141 200 119 308 0.68 G-protein alpha subunit AAA_16 PF13191.6 170 pGCA_002407145_00076 - 312 0.073 13.5 0.0 1 2 5.1 3.2e+03 -1.6 0.0 93 136 38 81 7 86 0.69 AAA ATPase domain AAA_16 PF13191.6 170 pGCA_002407145_00076 - 312 0.073 13.5 0.0 2 2 0.00037 0.23 11.8 0.0 25 88 144 210 133 288 0.60 AAA ATPase domain GTP_EFTU PF00009.27 194 pGCA_002407145_00076 - 312 0.085 12.4 0.7 1 2 0.0011 0.67 9.5 0.1 4 34 144 174 141 209 0.86 Elongation factor Tu GTP binding domain GTP_EFTU PF00009.27 194 pGCA_002407145_00076 - 312 0.085 12.4 0.7 2 2 0.45 2.8e+02 0.9 0.1 108 132 263 287 243 309 0.77 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.17 241 pGCA_002407145_00076 - 312 0.095 12.5 0.5 1 2 0.00031 0.19 11.5 0.0 1 23 148 170 148 188 0.82 Conserved hypothetical ATP binding protein ATP_bind_1 PF03029.17 241 pGCA_002407145_00076 - 312 0.095 12.5 0.5 2 2 6.9 4.2e+03 -2.8 0.1 201 237 267 302 255 305 0.60 Conserved hypothetical ATP binding protein Mg_chelatase PF01078.21 207 pGCA_002407145_00076 - 312 0.12 11.7 0.0 1 1 0.00039 0.24 10.8 0.0 11 54 132 175 126 198 0.79 Magnesium chelatase, subunit ChlI Pox_A32 PF04665.12 242 pGCA_002407145_00076 - 312 0.19 11.2 0.2 1 3 0.00031 0.19 11.2 0.2 14 37 144 167 134 179 0.82 Poxvirus A32 protein Pox_A32 PF04665.12 242 pGCA_002407145_00076 - 312 0.19 11.2 0.2 2 3 1.9 1.2e+03 -1.3 0.0 192 218 173 201 167 210 0.72 Poxvirus A32 protein Pox_A32 PF04665.12 242 pGCA_002407145_00076 - 312 0.19 11.2 0.2 3 3 4.9 3e+03 -2.6 0.1 164 196 260 294 247 308 0.54 Poxvirus A32 protein AAA_23 PF13476.6 200 pGCA_002407145_00076 - 312 0.54 10.7 4.8 1 2 5.1 3.2e+03 -1.6 0.0 70 84 26 40 5 97 0.48 AAA domain AAA_23 PF13476.6 200 pGCA_002407145_00076 - 312 0.54 10.7 4.8 2 2 0.00039 0.24 11.9 1.1 22 40 146 164 132 175 0.86 AAA domain TrbC PF04956.13 99 pGCA_002407145_00077 - 98 1.1e-17 64.0 9.2 1 1 1.4e-21 1.2e-17 63.9 9.2 15 99 3 91 1 91 0.95 TrbC/VIRB2 family DUF3687 PF12459.8 43 pGCA_002407145_00077 - 98 0.1 12.1 0.5 1 2 0.97 8.7e+03 -3.6 0.7 18 22 4 8 4 13 0.51 D-Ala-teichoic acid biosynthesis protein DUF3687 PF12459.8 43 pGCA_002407145_00077 - 98 0.1 12.1 0.5 2 2 1.1e-05 0.1 12.1 0.5 11 25 67 81 59 82 0.87 D-Ala-teichoic acid biosynthesis protein VirB3 PF05101.13 84 pGCA_002407145_00078 - 95 1.5e-14 54.0 0.9 1 1 2e-18 1.8e-14 53.7 0.9 3 83 7 85 5 86 0.90 Type IV secretory pathway, VirB3-like protein TraL PF07178.11 90 pGCA_002407145_00078 - 95 0.15 12.5 1.6 1 1 1.7e-05 0.16 12.5 1.6 3 52 9 58 7 91 0.91 TraL protein CagE_TrbE_VirB PF03135.14 206 pGCA_002407145_00079 - 821 9.5e-34 117.3 0.0 1 1 2.7e-36 2.1e-33 116.1 0.0 6 206 187 397 182 397 0.91 CagE, TrbE, VirB family, component of type IV transporter system AAA_22 PF13401.6 137 pGCA_002407145_00079 - 821 1e-06 29.1 0.4 1 4 1.3 1e+03 -0.0 0.0 91 115 132 161 91 200 0.71 AAA domain AAA_22 PF13401.6 137 pGCA_002407145_00079 - 821 1e-06 29.1 0.4 2 4 3.4 2.7e+03 -1.4 0.0 75 103 297 328 253 336 0.62 AAA domain AAA_22 PF13401.6 137 pGCA_002407145_00079 - 821 1e-06 29.1 0.4 3 4 9e-07 0.0007 19.9 0.0 6 88 455 566 451 578 0.68 AAA domain AAA_22 PF13401.6 137 pGCA_002407145_00079 - 821 1e-06 29.1 0.4 4 4 0.096 75 3.6 0.0 79 126 636 683 619 690 0.75 AAA domain AAA PF00004.29 132 pGCA_002407145_00079 - 821 0.00014 22.3 0.1 1 3 0.014 11 6.4 0.0 31 74 287 331 261 344 0.85 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_002407145_00079 - 821 0.00014 22.3 0.1 2 3 0.0034 2.6 8.5 0.0 2 19 458 475 457 495 0.82 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pGCA_002407145_00079 - 821 0.00014 22.3 0.1 3 3 0.25 1.9e+02 2.4 0.0 49 113 635 691 630 707 0.77 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 61 pGCA_002407145_00079 - 821 0.00049 19.8 0.0 1 1 2e-06 0.0015 18.2 0.0 19 39 451 471 441 484 0.80 P-loop containing region of AAA domain AAA_10 PF12846.7 362 pGCA_002407145_00079 - 821 0.0017 17.3 0.0 1 3 3.9 3e+03 -3.2 0.0 265 297 306 338 301 341 0.87 AAA-like domain AAA_10 PF12846.7 362 pGCA_002407145_00079 - 821 0.0017 17.3 0.0 2 3 0.015 12 4.7 0.0 22 43 455 476 447 495 0.77 AAA-like domain AAA_10 PF12846.7 362 pGCA_002407145_00079 - 821 0.0017 17.3 0.0 3 3 0.00072 0.56 9.1 0.0 243 290 649 696 611 716 0.88 AAA-like domain AAA_16 PF13191.6 170 pGCA_002407145_00079 - 821 0.0027 18.1 0.1 1 2 3.5 2.7e+03 -1.4 0.0 137 161 274 308 251 324 0.68 AAA ATPase domain AAA_16 PF13191.6 170 pGCA_002407145_00079 - 821 0.0027 18.1 0.1 2 2 1.7e-05 0.013 15.9 0.0 25 127 455 564 446 610 0.67 AAA ATPase domain AAA_23 PF13476.6 200 pGCA_002407145_00079 - 821 0.0037 17.8 6.6 1 3 0.19 1.5e+02 2.8 0.3 131 199 95 165 28 194 0.51 AAA domain AAA_23 PF13476.6 200 pGCA_002407145_00079 - 821 0.0037 17.8 6.6 2 3 7.6 5.9e+03 -2.5 0.0 189 195 291 297 256 373 0.56 AAA domain AAA_23 PF13476.6 200 pGCA_002407145_00079 - 821 0.0037 17.8 6.6 3 3 6.5e-06 0.005 17.4 0.3 18 42 453 477 441 626 0.87 AAA domain NACHT PF05729.12 166 pGCA_002407145_00079 - 821 0.004 17.1 0.0 1 1 1.6e-05 0.013 15.5 0.0 4 26 458 480 456 489 0.88 NACHT domain AAA_30 PF13604.6 192 pGCA_002407145_00079 - 821 0.0067 16.2 0.0 1 3 4.4 3.4e+03 -2.4 0.0 62 97 102 145 95 150 0.61 AAA domain AAA_30 PF13604.6 192 pGCA_002407145_00079 - 821 0.0067 16.2 0.0 2 3 9.1e-05 0.071 12.8 0.0 20 47 456 484 448 504 0.79 AAA domain AAA_30 PF13604.6 192 pGCA_002407145_00079 - 821 0.0067 16.2 0.0 3 3 1.2 9.2e+02 -0.6 0.0 85 99 642 657 610 685 0.74 AAA domain ABC_tran PF00005.27 137 pGCA_002407145_00079 - 821 0.0068 16.9 0.1 1 1 5.5e-05 0.043 14.3 0.0 4 32 447 475 445 507 0.87 ABC transporter FtsK_SpoIIIE PF01580.18 243 pGCA_002407145_00079 - 821 0.0069 15.8 0.0 1 1 1.9e-05 0.014 14.7 0.0 27 61 441 476 423 482 0.81 FtsK/SpoIIIE family AAA_21 PF13304.6 303 pGCA_002407145_00079 - 821 0.0073 16.2 0.5 1 2 0.0073 5.7 6.6 0.0 2 23 457 478 457 530 0.77 AAA domain, putative AbiEii toxin, Type IV TA system AAA_21 PF13304.6 303 pGCA_002407145_00079 - 821 0.0073 16.2 0.5 2 2 0.0072 5.6 6.7 0.1 240 299 624 689 544 691 0.90 AAA domain, putative AbiEii toxin, Type IV TA system DUF87 PF01935.17 227 pGCA_002407145_00079 - 821 0.055 13.6 1.6 1 4 0.95 7.4e+02 0.0 0.1 99 151 133 183 89 201 0.66 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_002407145_00079 - 821 0.055 13.6 1.6 2 4 0.00084 0.65 10.0 0.0 10 44 441 475 436 491 0.69 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_002407145_00079 - 821 0.055 13.6 1.6 3 4 5.3 4.2e+03 -2.4 0.0 185 212 594 621 515 634 0.55 Helicase HerA, central domain DUF87 PF01935.17 227 pGCA_002407145_00079 - 821 0.055 13.6 1.6 4 4 3.1 2.4e+03 -1.6 0.0 50 75 690 723 677 816 0.62 Helicase HerA, central domain AAA_24 PF13479.6 197 pGCA_002407145_00079 - 821 0.072 12.8 0.0 1 2 0.00046 0.36 10.5 0.0 6 34 458 492 456 500 0.81 AAA domain AAA_24 PF13479.6 197 pGCA_002407145_00079 - 821 0.072 12.8 0.0 2 2 4.6 3.6e+03 -2.5 0.0 113 133 667 688 665 697 0.81 AAA domain ATP_bind_1 PF03029.17 241 pGCA_002407145_00079 - 821 0.083 12.7 0.0 1 2 0.034 27 4.5 0.0 181 240 137 205 107 206 0.74 Conserved hypothetical ATP binding protein ATP_bind_1 PF03029.17 241 pGCA_002407145_00079 - 821 0.083 12.7 0.0 2 2 0.016 13 5.5 0.0 1 15 459 473 459 483 0.86 Conserved hypothetical ATP binding protein Syntaxin_2 PF14523.6 101 pGCA_002407145_00079 - 821 0.094 13.1 1.2 1 2 0.0036 2.8 8.4 0.3 51 99 134 178 130 180 0.88 Syntaxin-like protein Syntaxin_2 PF14523.6 101 pGCA_002407145_00079 - 821 0.094 13.1 1.2 2 2 0.31 2.4e+02 2.1 0.0 4 25 560 581 557 591 0.83 Syntaxin-like protein ATPase_2 PF01637.18 233 pGCA_002407145_00079 - 821 0.1 12.5 2.6 1 3 1.5 1.2e+03 -0.8 1.0 82 127 123 187 81 201 0.56 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pGCA_002407145_00079 - 821 0.1 12.5 2.6 2 3 0.00066 0.52 10.2 0.0 24 56 458 490 455 500 0.86 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pGCA_002407145_00079 - 821 0.1 12.5 2.6 3 3 1.7 1.3e+03 -1.0 0.0 80 128 606 656 552 680 0.68 ATPase domain predominantly from Archaea DUF2075 PF09848.9 363 pGCA_002407145_00079 - 821 0.12 11.6 1.5 1 4 0.7 5.5e+02 -0.4 0.1 166 195 288 317 274 337 0.76 Uncharacterized conserved protein (DUF2075) DUF2075 PF09848.9 363 pGCA_002407145_00079 - 821 0.12 11.6 1.5 2 4 0.0017 1.4 8.1 0.0 5 28 458 481 456 496 0.80 Uncharacterized conserved protein (DUF2075) DUF2075 PF09848.9 363 pGCA_002407145_00079 - 821 0.12 11.6 1.5 3 4 0.87 6.8e+02 -0.8 0.0 88 138 646 691 619 709 0.70 Uncharacterized conserved protein (DUF2075) DUF2075 PF09848.9 363 pGCA_002407145_00079 - 821 0.12 11.6 1.5 4 4 6.3 4.9e+03 -3.6 0.3 171 265 790 807 773 819 0.54 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.6 194 pGCA_002407145_00079 - 821 0.15 11.7 0.0 1 1 0.00043 0.34 10.5 0.0 35 57 456 478 445 513 0.91 AAA domain cobW PF02492.19 177 pGCA_002407145_00079 - 821 0.16 11.5 0.0 1 1 0.00044 0.34 10.5 0.0 3 21 457 475 456 488 0.79 CobW/HypB/UreG, nucleotide-binding domain AAA_11 PF13086.6 261 pGCA_002407145_00079 - 821 0.21 11.3 0.0 1 1 0.00099 0.77 9.5 0.0 19 42 456 479 443 501 0.78 AAA domain CdiA_C_tRNase PF18664.1 116 pGCA_002407145_00079 - 821 0.24 11.6 3.2 1 2 0.00029 0.23 11.7 0.3 39 115 135 213 131 213 0.79 CdiA C-terminal tRNase domain CdiA_C_tRNase PF18664.1 116 pGCA_002407145_00079 - 821 0.24 11.6 3.2 2 2 7.7 6e+03 -2.6 0.0 43 67 775 799 769 806 0.76 CdiA C-terminal tRNase domain AAA_14 PF13173.6 131 pGCA_002407145_00079 - 821 1.9 8.5 8.4 1 5 0.37 2.9e+02 1.5 1.2 45 88 112 160 73 174 0.61 AAA domain AAA_14 PF13173.6 131 pGCA_002407145_00079 - 821 1.9 8.5 8.4 2 5 4.1 3.2e+03 -1.9 0.0 54 78 260 293 245 310 0.58 AAA domain AAA_14 PF13173.6 131 pGCA_002407145_00079 - 821 1.9 8.5 8.4 3 5 0.021 17 5.5 0.0 6 27 458 479 455 498 0.75 AAA domain AAA_14 PF13173.6 131 pGCA_002407145_00079 - 821 1.9 8.5 8.4 4 5 0.43 3.4e+02 1.3 0.0 55 111 634 699 600 710 0.63 AAA domain AAA_14 PF13173.6 131 pGCA_002407145_00079 - 821 1.9 8.5 8.4 5 5 1.9 1.5e+03 -0.8 0.1 14 40 769 796 767 820 0.56 AAA domain TrbM PF07424.11 156 pGCA_002407145_00080 - 223 2.3e-43 147.8 0.8 1 1 1.8e-47 3.3e-43 147.3 0.8 1 151 30 182 30 187 0.87 TrbM T4SS PF07996.11 197 pGCA_002407145_00081 - 269 7.2e-05 23.3 17.8 1 2 3.2e-08 7.2e-05 23.3 17.8 1 142 35 168 35 199 0.78 Type IV secretion system proteins T4SS PF07996.11 197 pGCA_002407145_00081 - 269 7.2e-05 23.3 17.8 2 2 2.3 5.2e+03 -2.4 7.1 79 134 186 251 163 257 0.48 Type IV secretion system proteins DUF2730 PF10805.8 102 pGCA_002407145_00081 - 269 0.064 13.4 3.0 1 2 0.0036 8.2 6.6 0.1 33 71 39 77 33 106 0.86 Protein of unknown function (DUF2730) DUF2730 PF10805.8 102 pGCA_002407145_00081 - 269 0.064 13.4 3.0 2 2 0.003 6.8 6.8 0.4 44 91 159 207 143 223 0.71 Protein of unknown function (DUF2730) LPP PF04728.13 53 pGCA_002407145_00081 - 269 0.24 11.8 0.0 1 4 0.68 1.5e+03 -0.4 4.2 4 34 43 73 40 81 0.70 Lipoprotein leucine-zipper LPP PF04728.13 53 pGCA_002407145_00081 - 269 0.24 11.8 0.0 2 4 0.00011 0.24 11.8 0.0 1 39 103 141 103 143 0.97 Lipoprotein leucine-zipper LPP PF04728.13 53 pGCA_002407145_00081 - 269 0.24 11.8 0.0 3 4 0.35 7.9e+02 0.6 0.7 4 34 166 199 160 202 0.57 Lipoprotein leucine-zipper LPP PF04728.13 53 pGCA_002407145_00081 - 269 0.24 11.8 0.0 4 4 2.5 5.6e+03 -2.2 0.1 38 44 232 238 207 245 0.67 Lipoprotein leucine-zipper DUF2203 PF09969.9 122 pGCA_002407145_00081 - 269 0.49 11.1 10.3 1 2 0.072 1.6e+02 3.0 1.5 17 52 46 84 38 108 0.44 Uncharacterized conserved protein (DUF2203) DUF2203 PF09969.9 122 pGCA_002407145_00081 - 269 0.49 11.1 10.3 2 2 0.00091 2 9.1 2.0 23 95 168 238 93 240 0.82 Uncharacterized conserved protein (DUF2203) APG6_N PF17675.1 133 pGCA_002407145_00081 - 269 3 8.4 22.4 1 2 0.00043 0.97 10.0 3.6 59 113 44 98 39 111 0.81 Apg6 coiled-coil region APG6_N PF17675.1 133 pGCA_002407145_00081 - 269 3 8.4 22.4 2 2 0.033 74 3.9 10.8 16 112 116 240 111 254 0.63 Apg6 coiled-coil region DUF948 PF06103.11 89 pGCA_002407145_00081 - 269 7.3 6.9 10.4 1 4 0.0011 2.4 8.5 1.0 21 73 55 121 43 137 0.70 Bacterial protein of unknown function (DUF948) DUF948 PF06103.11 89 pGCA_002407145_00081 - 269 7.3 6.9 10.4 2 4 0.32 7.2e+02 0.5 0.2 71 71 156 156 111 199 0.53 Bacterial protein of unknown function (DUF948) DUF948 PF06103.11 89 pGCA_002407145_00081 - 269 7.3 6.9 10.4 3 4 0.35 7.8e+02 0.4 0.6 52 65 180 193 148 223 0.47 Bacterial protein of unknown function (DUF948) DUF948 PF06103.11 89 pGCA_002407145_00081 - 269 7.3 6.9 10.4 4 4 0.065 1.5e+02 2.8 0.8 23 83 197 257 179 262 0.70 Bacterial protein of unknown function (DUF948) FeoB_Cyto PF17910.1 91 pGCA_002407145_00081 - 269 7.7 7.1 8.9 1 3 0.58 1.3e+03 -0.0 0.1 40 67 60 84 42 108 0.59 FeoB cytosolic helical domain FeoB_Cyto PF17910.1 91 pGCA_002407145_00081 - 269 7.7 7.1 8.9 2 3 0.00057 1.3 9.6 1.8 45 87 104 157 59 161 0.81 FeoB cytosolic helical domain FeoB_Cyto PF17910.1 91 pGCA_002407145_00081 - 269 7.7 7.1 8.9 3 3 0.56 1.3e+03 0.0 0.4 35 74 174 219 169 233 0.56 FeoB cytosolic helical domain Fib_alpha PF08702.10 143 pGCA_002407145_00081 - 269 9.9 6.3 26.2 1 3 0.04 89 3.2 6.3 36 102 40 105 39 107 0.84 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_002407145_00081 - 269 9.9 6.3 26.2 2 3 0.001 2.2 8.4 5.4 26 126 93 189 88 194 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pGCA_002407145_00081 - 269 9.9 6.3 26.2 3 3 0.009 20 5.3 5.0 75 120 184 228 170 243 0.81 Fibrinogen alpha/beta chain family CENP-X PF09415.10 75 pGCA_002407145_00082 - 89 0.036 14.4 0.2 1 1 2.6e-06 0.047 14.0 0.2 27 66 27 73 24 76 0.87 CENP-S associating Centromere protein X TrbL PF04610.14 215 pGCA_002407145_00083 - 407 4.5e-13 49.5 31.2 1 2 2.5e-17 4.5e-13 49.5 31.2 1 213 68 271 68 273 0.94 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pGCA_002407145_00083 - 407 4.5e-13 49.5 31.2 2 2 0.0016 28 4.4 3.4 20 67 251 297 247 349 0.62 TrbL/VirB6 plasmid conjugal transfer protein VirB8 PF04335.13 214 pGCA_002407145_00084 - 231 9.4e-42 143.3 0.3 1 1 1.2e-45 1.1e-41 143.1 0.3 2 212 25 228 24 230 0.94 VirB8 protein DNA_pack_N PF02500.15 278 pGCA_002407145_00084 - 231 0.007 16.2 0.2 1 1 1.3e-06 0.012 15.5 0.2 195 256 41 103 38 111 0.74 Probable DNA packing protein, N-terminus CagX PF03524.15 211 pGCA_002407145_00085 - 307 6.9e-50 169.7 0.2 1 1 5.1e-54 9.2e-50 169.3 0.2 15 210 67 281 56 282 0.90 Conjugal transfer protein TrbH PF07283.11 119 pGCA_002407145_00086 - 147 4.8e-06 26.7 0.0 1 1 7.9e-10 7.1e-06 26.2 0.0 2 56 36 91 35 135 0.81 Conjugal transfer protein TrbH FeoB_N PF02421.18 156 pGCA_002407145_00086 - 147 0.091 12.3 1.0 1 1 1.4e-05 0.13 11.8 1.0 13 94 56 135 47 139 0.92 Ferrous iron transport protein B TrbI PF03743.14 187 pGCA_002407145_00087 - 413 1.8e-60 204.0 0.7 1 2 0.24 5.4e+02 0.3 0.9 137 170 88 121 34 139 0.72 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pGCA_002407145_00087 - 413 1.8e-60 204.0 0.7 2 2 8e-64 1.8e-60 204.0 0.7 2 186 224 404 223 405 0.96 Bacterial conjugation TrbI-like protein SARAF PF06682.12 331 pGCA_002407145_00087 - 413 0.0044 16.7 0.2 1 1 3.3e-06 0.0073 16.0 0.2 154 239 16 112 4 120 0.60 SOCE-associated regulatory factor of calcium homoeostasis EphA2_TM PF14575.6 78 pGCA_002407145_00087 - 413 0.028 15.3 0.1 1 2 4.5e-05 0.1 13.5 0.0 3 58 24 77 22 79 0.64 Ephrin type-A receptor 2 transmembrane domain EphA2_TM PF14575.6 78 pGCA_002407145_00087 - 413 0.028 15.3 0.1 2 2 7.8 1.8e+04 -3.3 0.0 8 34 330 356 328 379 0.57 Ephrin type-A receptor 2 transmembrane domain DUF4330 PF14221.6 167 pGCA_002407145_00087 - 413 0.069 13.4 1.4 1 1 7.1e-05 0.16 12.2 1.2 11 109 19 117 10 141 0.65 Domain of unknown function (DUF4330) Shisa PF13908.6 190 pGCA_002407145_00087 - 413 0.16 12.2 1.7 1 1 0.00016 0.36 11.0 1.7 96 176 24 111 19 124 0.62 Wnt and FGF inhibitory regulator Ctr PF04145.15 148 pGCA_002407145_00087 - 413 0.25 11.9 0.9 1 1 0.00026 0.59 10.7 0.8 24 84 26 105 20 161 0.65 Ctr copper transporter family Chordopox_A13L PF05961.11 69 pGCA_002407145_00087 - 413 0.54 10.5 3.2 1 2 0.00014 0.3 11.3 0.2 8 55 24 73 20 83 0.74 Chordopoxvirus A13L protein Chordopox_A13L PF05961.11 69 pGCA_002407145_00087 - 413 0.54 10.5 3.2 2 2 3.6 8.1e+03 -2.8 0.3 28 38 106 116 102 132 0.52 Chordopoxvirus A13L protein O-antigen_lig PF13425.6 468 pGCA_002407145_00087 - 413 0.55 9.0 5.2 1 1 0.00052 1.2 7.9 5.2 238 320 15 113 10 167 0.61 O-antigen ligase like membrane protein SLT PF01464.20 117 pGCA_002407145_00088 - 181 5.5e-18 64.7 1.2 1 1 1.7e-21 7.8e-18 64.2 1.2 5 113 8 147 5 151 0.91 Transglycosylase SLT domain TraH_2 PF06871.11 207 pGCA_002407145_00088 - 181 2.1e-10 40.6 0.0 1 1 5.2e-14 2.3e-10 40.4 0.0 1 118 1 117 1 169 0.84 TraH_2 HU-CCDC81_euk_2 PF18289.1 75 pGCA_002407145_00088 - 181 0.028 14.6 0.4 1 2 1.4e-05 0.062 13.5 0.3 27 58 18 49 16 61 0.90 CCDC81 eukaryotic HU domain 2 HU-CCDC81_euk_2 PF18289.1 75 pGCA_002407145_00088 - 181 0.028 14.6 0.4 2 2 1.4 6.1e+03 -2.5 0.0 43 46 66 69 53 89 0.63 CCDC81 eukaryotic HU domain 2 HP0268 PF18618.1 80 pGCA_002407145_00088 - 181 0.94 10.0 5.6 1 3 0.15 6.5e+02 0.8 0.2 36 65 43 71 10 78 0.61 HP0268 HP0268 PF18618.1 80 pGCA_002407145_00088 - 181 0.94 10.0 5.6 2 3 0.00012 0.55 10.7 0.2 15 47 83 117 69 124 0.77 HP0268 HP0268 PF18618.1 80 pGCA_002407145_00088 - 181 0.94 10.0 5.6 3 3 0.36 1.6e+03 -0.4 0.1 18 33 151 166 142 181 0.67 HP0268 SSB PF00436.25 104 pGCA_002407145_00090 - 120 2.8e-18 65.9 0.0 1 1 1.9e-22 3.4e-18 65.6 0.0 1 103 2 98 2 99 0.96 Single-strand binding protein family MPTase-PolyVal PF18818.1 126 pGCA_002407145_00092 - 737 5.4e-43 146.0 0.0 1 1 2.3e-46 1e-42 145.1 0.0 2 125 157 280 156 281 0.98 Metallopeptidase superfamily domain DUF1738 PF08401.11 128 pGCA_002407145_00092 - 737 8.1e-32 110.0 1.4 1 1 7.6e-35 3.4e-31 108.0 1.4 2 118 6 118 5 132 0.86 Domain of unknown function (DUF1738) Toprim_3 PF13362.6 95 pGCA_002407145_00092 - 737 2.8e-08 34.0 0.0 1 1 1.6e-11 7.1e-08 32.7 0.0 2 93 586 691 585 693 0.83 Toprim domain DUF29 PF01724.16 138 pGCA_002407145_00092 - 737 6.6 7.0 11.6 1 3 0.25 1.1e+03 -0.3 0.2 26 64 281 319 263 340 0.80 Domain of unknown function DUF29 DUF29 PF01724.16 138 pGCA_002407145_00092 - 737 6.6 7.0 11.6 2 3 5.6e-05 0.25 11.6 2.6 66 138 444 515 432 515 0.82 Domain of unknown function DUF29 DUF29 PF01724.16 138 pGCA_002407145_00092 - 737 6.6 7.0 11.6 3 3 0.81 3.6e+03 -1.9 0.1 39 64 689 714 682 732 0.58 Domain of unknown function DUF29 T4SS-DNA_transf PF02534.14 469 pGCA_002407145_00093 - 607 2.9e-97 326.4 0.1 1 1 7e-101 4.2e-97 325.9 0.1 10 459 110 598 101 605 0.83 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pGCA_002407145_00093 - 607 4.1e-26 91.4 0.0 1 1 1.3e-29 7.9e-26 90.5 0.0 2 125 432 552 431 553 0.93 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pGCA_002407145_00093 - 607 1e-20 74.0 0.1 1 1 3.5e-23 2.1e-19 69.7 0.1 122 368 295 554 140 556 0.67 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.23 128 pGCA_002407145_00094 - 239 3.2e-08 33.7 0.0 1 1 2.5e-11 4e-08 33.4 0.0 3 55 7 133 5 200 0.64 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 177 pGCA_002407145_00094 - 239 0.00011 22.1 0.1 1 1 1.4e-07 0.00023 21.1 0.1 3 62 4 59 2 107 0.66 AAA domain ParA PF10609.9 246 pGCA_002407145_00094 - 239 0.00042 19.8 0.0 1 1 3.9e-07 0.00064 19.2 0.0 4 45 3 41 1 61 0.85 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 305 pGCA_002407145_00094 - 239 0.00058 19.1 0.1 1 2 1.1e-06 0.0017 17.6 0.0 4 40 6 42 3 59 0.92 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 pGCA_002407145_00094 - 239 0.00058 19.1 0.1 2 2 0.76 1.2e+03 -1.7 0.0 58 79 160 181 151 220 0.66 Anion-transporting ATPase Fer4_NifH PF00142.18 271 pGCA_002407145_00094 - 239 0.0012 18.4 0.0 1 1 1.3e-06 0.0021 17.6 0.0 4 65 7 66 4 86 0.75 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLP1_P PF16575.5 188 pGCA_002407145_00094 - 239 0.0066 16.3 0.1 1 2 1.6e-05 0.027 14.3 0.0 1 35 10 44 10 51 0.91 mRNA cleavage and polyadenylation factor CLP1 P-loop CLP1_P PF16575.5 188 pGCA_002407145_00094 - 239 0.0066 16.3 0.1 2 2 0.78 1.3e+03 -1.0 0.0 122 148 137 162 132 182 0.69 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF1647 PF07801.11 141 pGCA_002407145_00094 - 239 0.018 14.8 0.5 1 2 0.0027 4.4 7.0 0.0 64 133 18 86 15 90 0.85 Protein of unknown function (DUF1647) DUF1647 PF07801.11 141 pGCA_002407145_00094 - 239 0.018 14.8 0.5 2 2 0.0056 9.2 6.0 0.1 25 76 140 196 135 230 0.78 Protein of unknown function (DUF1647) Epimerase PF01370.21 241 pGCA_002407145_00094 - 239 0.02 14.3 0.0 1 1 2.1e-05 0.034 13.6 0.0 8 121 17 121 14 147 0.81 NAD dependent epimerase/dehydratase family CBP_BcsQ PF06564.12 234 pGCA_002407145_00094 - 239 0.043 13.3 0.0 1 1 5.3e-05 0.087 12.3 0.0 7 46 9 47 4 58 0.88 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 262 pGCA_002407145_00094 - 239 0.064 12.5 0.0 1 1 5.9e-05 0.096 12.0 0.0 5 44 7 46 3 58 0.90 ATPase MipZ FIST PF08495.10 172 pGCA_002407145_00094 - 239 0.099 12.6 0.0 1 1 7.5e-05 0.12 12.4 0.0 69 115 71 139 10 179 0.59 FIST N domain Fic PF02661.18 97 pGCA_002407145_00096 - 227 5.2e-16 59.3 0.1 1 1 4.6e-20 8.3e-16 58.7 0.1 2 96 60 169 59 170 0.90 Fic/DOC family Peptidase_S26 PF10502.9 138 pGCA_002407145_00097 - 155 1e-20 73.9 0.0 1 1 1.1e-23 1e-19 70.7 0.0 2 125 29 140 28 152 0.94 Signal peptidase, peptidase S26 Peptidase_S24 PF00717.23 70 pGCA_002407145_00097 - 155 0.0018 18.2 0.0 1 1 3.6e-07 0.0032 17.4 0.0 23 68 47 88 33 94 0.86 Peptidase S24-like Relaxase PF03432.14 242 pKC907204_00001 - 416 2.1e-09 37.3 4.9 1 3 0.039 1.7e+02 1.6 2.4 127 195 13 80 2 112 0.51 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pKC907204_00001 - 416 2.1e-09 37.3 4.9 2 3 4.8e-13 2.1e-09 37.3 4.9 52 126 124 202 73 264 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pKC907204_00001 - 416 2.1e-09 37.3 4.9 3 3 1 4.7e+03 -3.1 0.5 40 52 378 390 338 412 0.53 Relaxase/Mobilisation nuclease domain B3 PF02362.21 101 pKC907204_00001 - 416 0.00093 19.0 0.2 1 2 0.2 9.1e+02 -0.2 0.0 25 48 174 197 153 202 0.78 B3 DNA binding domain B3 PF02362.21 101 pKC907204_00001 - 416 0.00093 19.0 0.2 2 2 2.3e-06 0.01 15.7 0.1 42 100 274 330 255 331 0.79 B3 DNA binding domain Ig_GlcNase PF18368.1 105 pKC907204_00001 - 416 0.039 14.1 0.2 1 3 3.2 1.4e+04 -3.8 0.0 31 44 57 70 49 87 0.51 Exo-beta-D-glucosaminidase Ig-fold domain Ig_GlcNase PF18368.1 105 pKC907204_00001 - 416 0.039 14.1 0.2 2 3 3.8e-05 0.17 12.0 0.0 13 71 147 205 137 233 0.79 Exo-beta-D-glucosaminidase Ig-fold domain Ig_GlcNase PF18368.1 105 pKC907204_00001 - 416 0.039 14.1 0.2 3 3 1.2 5.3e+03 -2.4 0.0 31 44 340 354 322 361 0.72 Exo-beta-D-glucosaminidase Ig-fold domain DUF2884 PF11101.8 228 pKC907204_00001 - 416 0.045 13.3 0.1 1 1 2.5e-05 0.11 12.0 0.1 82 144 60 121 55 129 0.89 Protein of unknown function (DUF2884) Lip_prot_lig_C PF10437.9 85 pKX686749_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pKX686749_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pKX686749_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pKX686749_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pKX686749_00003 - 104 0.01 15.2 2.9 1 3 1.1e-06 0.01 15.2 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pKX686749_00003 - 104 0.01 15.2 2.9 2 3 0.76 6.8e+03 -3.4 0.2 16 22 67 73 66 77 0.52 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pKX686749_00003 - 104 0.01 15.2 2.9 3 3 0.27 2.4e+03 -2.0 1.0 17 29 91 103 89 104 0.78 Putative Flagellin, Flp1-like, domain vMSA PF00695.19 400 pKX686749_00003 - 104 0.78 8.8 4.5 1 1 9.8e-05 0.88 8.6 4.5 330 398 26 100 7 102 0.74 Major surface antigen from hepadnavirus LysE PF01810.18 193 pKX686749_00004 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 pKX686749_00004 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pKX686749_00004 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 pKX686749_00004 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 pKX686749_00004 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 pKX686749_00004 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 pKX686749_00004 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 pKX686749_00004 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 pKX686749_00004 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pKX686749_00004 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pKX686749_00004 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 pKX686749_00004 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 pKX686749_00005 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pKX686749_00005 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pKX686749_00005 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pKX686749_00005 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pKX686749_00005 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pKX686749_00005 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pKX686749_00006 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pKX686749_00006 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pKX686749_00007 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pKX686749_00007 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pKX686749_00007 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pKX686749_00007 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pKX686749_00007 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pKX686749_00007 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pKX686749_00008 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pKX686749_00009 - 1931 1.4e-16 60.2 0.7 1 3 1.2e-19 4.2e-16 58.6 0.1 56 245 1016 1272 934 1313 0.73 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pKX686749_00009 - 1931 1.4e-16 60.2 0.7 2 3 0.98 3.5e+03 -3.6 0.0 245 282 1468 1510 1464 1524 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pKX686749_00009 - 1931 1.4e-16 60.2 0.7 3 3 1.1 3.9e+03 -3.8 0.0 172 199 1878 1906 1859 1914 0.75 SNF2 family N-terminal domain ResIII PF04851.15 171 pKX686749_00009 - 1931 8.6e-08 32.4 8.6 1 2 2.4e-11 8.6e-08 32.4 8.6 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pKX686749_00009 - 1931 8.6e-08 32.4 8.6 2 2 0.34 1.2e+03 -0.7 5.2 33 121 1797 1903 1746 1928 0.65 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pKX686749_00009 - 1931 9.2e-07 29.2 0.2 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pKX686749_00009 - 1931 9.2e-07 29.2 0.2 2 2 1.4e-08 4.9e-05 23.6 0.0 40 111 1510 1583 1468 1583 0.79 Helicase conserved C-terminal domain Eco57I PF07669.11 106 pKX686749_00009 - 1931 2.1e-05 24.9 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pKX686749_00009 - 1931 2.1e-05 24.9 0.7 2 2 1.7 6.1e+03 -2.2 0.0 43 81 662 700 654 715 0.69 Eco57I restriction-modification methylase DEAD PF00270.29 176 pKX686749_00009 - 1931 2.5e-05 24.1 2.4 1 2 4.2e-07 0.0015 18.3 0.5 2 108 1003 1108 1002 1205 0.60 DEAD/DEAH box helicase DEAD PF00270.29 176 pKX686749_00009 - 1931 2.5e-05 24.1 2.4 2 2 0.15 5.5e+02 0.2 0.1 120 143 1883 1908 1832 1928 0.67 DEAD/DEAH box helicase HTH_19 PF12844.7 65 pKX686749_00010 - 314 1e-05 25.5 0.2 1 2 0.0055 7.1 6.7 0.0 11 31 9 29 1 42 0.86 Helix-turn-helix domain HTH_19 PF12844.7 65 pKX686749_00010 - 314 1e-05 25.5 0.2 2 2 8.1e-06 0.01 15.8 0.0 27 64 116 152 91 153 0.90 Helix-turn-helix domain HTH_3 PF01381.22 55 pKX686749_00010 - 314 5.4e-05 23.2 0.0 1 2 3.6e-07 0.00046 20.2 0.0 2 29 3 30 2 30 0.90 Helix-turn-helix HTH_3 PF01381.22 55 pKX686749_00010 - 314 5.4e-05 23.2 0.0 2 2 0.67 8.6e+02 0.1 0.0 26 55 118 147 107 147 0.85 Helix-turn-helix Phage_CI_repr PF07022.13 65 pKX686749_00010 - 314 0.0011 19.0 0.0 1 2 6.6e-05 0.084 13.0 0.0 11 49 10 47 2 50 0.77 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 pKX686749_00010 - 314 0.0011 19.0 0.0 2 2 0.064 82 3.4 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 pKX686749_00010 - 314 0.0078 15.7 0.0 1 2 8.2e-05 0.11 12.1 0.0 17 34 10 27 9 27 0.92 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pKX686749_00010 - 314 0.0078 15.7 0.0 2 2 0.29 3.8e+02 0.8 0.0 26 39 98 111 95 112 0.87 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 52 pKX686749_00010 - 314 0.015 15.4 0.0 1 1 2.9e-05 0.037 14.2 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain YdaS_antitoxin PF15943.5 65 pKX686749_00010 - 314 0.016 15.0 0.1 1 2 5.1e-05 0.065 13.1 0.0 4 36 5 37 2 49 0.75 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 pKX686749_00010 - 314 0.016 15.0 0.1 2 2 2.5 3.2e+03 -1.9 0.1 38 47 290 299 289 300 0.87 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 50 pKX686749_00010 - 314 0.019 14.7 0.0 1 1 3.5e-05 0.045 13.6 0.0 16 37 7 30 1 36 0.86 Homeodomain-like domain Imm3 PF14425.6 119 pKX686749_00010 - 314 0.042 13.9 0.1 1 1 6.8e-05 0.087 12.9 0.1 33 113 26 104 2 109 0.75 Immunity protein Imm3 HTH_26 PF13443.6 63 pKX686749_00010 - 314 0.071 13.6 0.0 1 1 0.00012 0.16 12.4 0.0 3 30 3 30 1 38 0.88 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.7 51 pKX686749_00010 - 314 0.097 12.9 0.0 1 2 0.13 1.7e+02 2.5 0.0 5 16 3 14 2 16 0.90 Helix-turn-helix domain HTH_17 PF12728.7 51 pKX686749_00010 - 314 0.097 12.9 0.0 2 2 0.0011 1.4 9.2 0.0 5 27 14 36 11 42 0.83 Helix-turn-helix domain HTH_31 PF13560.6 64 pKX686749_00010 - 314 0.1 12.9 0.0 1 1 0.00016 0.2 12.0 0.0 12 33 8 29 2 40 0.88 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 pKX686749_00010 - 314 0.13 11.9 0.0 1 1 0.00027 0.35 10.6 0.0 25 46 9 30 5 30 0.93 Sigma-70, region 4 Phage_AlpA PF05930.12 51 pKX686749_00010 - 314 0.14 12.0 0.0 1 2 0.015 20 5.1 0.0 6 19 2 15 1 18 0.89 Prophage CP4-57 regulatory protein (AlpA) Phage_AlpA PF05930.12 51 pKX686749_00010 - 314 0.14 12.0 0.0 2 2 0.0031 4 7.3 0.0 5 23 12 30 11 35 0.88 Prophage CP4-57 regulatory protein (AlpA) HTH_Mga PF08280.11 60 pKX686749_00010 - 314 0.15 12.1 1.8 1 3 0.0044 5.6 7.1 0.1 21 37 11 27 4 30 0.89 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pKX686749_00010 - 314 0.15 12.1 1.8 2 3 0.065 83 3.3 0.0 25 59 41 75 32 76 0.80 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pKX686749_00010 - 314 0.15 12.1 1.8 3 3 9 1.2e+04 -3.5 0.0 46 50 94 98 86 105 0.47 M protein trans-acting positive regulator (MGA) HTH domain Relaxase PF03432.14 242 pKX686749_00011 - 462 5.1e-10 39.4 7.2 1 2 2.9e-14 5.1e-10 39.4 7.2 48 228 119 296 70 309 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pKX686749_00011 - 462 5.1e-10 39.4 7.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pKX686749_00012 - 183 0.00011 22.1 6.6 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pKX686749_00012 - 183 0.00011 22.1 6.6 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pKX686749_00012 - 183 0.00011 22.1 6.6 3 3 1.2e-05 0.045 13.8 0.9 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pKX686749_00012 - 183 0.053 13.6 2.1 1 1 2e-05 0.072 13.2 1.5 57 131 21 103 9 124 0.66 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pKX686749_00012 - 183 0.4 10.8 8.5 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pKX686749_00012 - 183 0.4 10.8 8.5 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pKX686749_00012 - 183 0.4 10.8 8.5 3 3 0.00042 1.5 8.9 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pKX686749_00012 - 183 0.4 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pKX686749_00012 - 183 0.4 10.9 6.2 2 2 0.00016 0.56 10.5 1.1 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 pKX686749_00012 - 183 0.54 10.6 5.9 1 2 0.00045 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pKX686749_00012 - 183 0.54 10.6 5.9 2 2 0.03 1.1e+02 3.2 0.1 45 87 102 142 94 161 0.73 NLRC4 helical domain CdvA PF18822.1 123 pKX686749_00013 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 pKX686749_00013 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 pKX686749_00013 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 pKX686749_00013 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 pKX686749_00013 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 pKX686749_00015 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pKX686749_00015 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pKX686749_00015 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pKX686749_00015 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pKX686749_00015 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pKX686749_00016 - 97 0.007 16.3 0.0 1 1 1.7e-06 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) nec1 PF10379.9 184 pKX686749_00016 - 97 0.067 12.7 0.0 1 1 1.1e-05 0.099 12.1 0.0 65 105 56 94 35 96 0.75 Virulence protein nec1 Sdh_cyt PF01127.22 121 pKX686749_00017 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 pKX686749_00017 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 pKX686749_00017 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pKX686749_00019 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pKX686749_00020 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pKX686749_00021 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pKX686749_00021 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pKX686749_00021 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pKX686749_00021 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pKX686749_00021 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pKX686749_00021 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 pKX686749_00021 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pKX686749_00021 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pKX686749_00021 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pKX686749_00021 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pKX686749_00021 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pKX686749_00021 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pKX686749_00021 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 pKX686749_00022 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pKX686749_00022 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 pKX686749_00022 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pKX686749_00022 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pKX686749_00022 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pKX686749_00022 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pKX686749_00022 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain CRISPR_Cas2 PF09827.9 76 pKX686749_00023 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pKX686749_00023 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 TrbC PF04956.13 99 pKX686749_00025 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pKX686749_00025 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pKX686749_00026 - 922 7e-51 173.3 0.4 1 1 1.8e-54 1.6e-50 172.1 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pKX686749_00026 - 922 3.6e-21 75.2 0.8 1 1 6.9e-25 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein Phage_pRha PF09669.10 88 pKX686749_00027 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 pKX686749_00027 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 pKX686749_00027 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) PBECR2 PF18810.1 119 pKX686749_00028 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 SSB PF00436.25 104 pKX686749_00029 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pKX686749_00030 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pKX686749_00030 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pKX686749_00030 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pKX686749_00030 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pKX686749_00030 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pKX686749_00030 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pKX686749_00030 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pKX686749_00031 - 329 1.8e-28 100.3 13.3 1 1 5.5e-32 2.5e-28 99.9 13.3 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pKX686749_00031 - 329 0.0035 17.5 0.5 1 2 0.27 1.2e+03 -0.3 0.0 30 54 134 158 120 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pKX686749_00031 - 329 0.0035 17.5 0.5 2 2 4.7e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 pKX686749_00031 - 329 0.017 15.7 0.9 1 2 1.3 6e+03 -2.1 0.0 55 70 124 139 101 163 0.57 von Willebrand factor type A domain VWA_2 PF13519.6 107 pKX686749_00031 - 329 0.017 15.7 0.9 2 2 8.1e-06 0.036 14.7 0.2 31 84 208 270 197 307 0.84 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 pKX686749_00031 - 329 0.5 11.1 11.4 1 2 0.042 1.9e+02 2.7 0.8 49 135 108 145 95 182 0.47 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pKX686749_00031 - 329 0.5 11.1 11.4 2 2 9.1e-05 0.41 11.3 4.5 49 116 225 306 205 328 0.68 Apoptosis antagonizing transcription factor TrbL PF04610.14 215 pKX686749_00032 - 331 2.1e-30 106.1 33.3 1 2 3.5e-34 2.1e-30 106.1 33.3 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pKX686749_00032 - 331 2.1e-30 106.1 33.3 2 2 0.75 4.5e+03 -2.8 0.1 84 84 289 289 259 327 0.50 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pKX686749_00032 - 331 0.065 13.0 0.9 1 2 0.4 2.4e+03 -1.6 0.1 39 51 70 82 61 114 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pKX686749_00032 - 331 0.065 13.0 0.9 2 2 3.6e-05 0.22 11.4 0.1 37 81 243 287 222 299 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 pKX686749_00032 - 331 0.17 11.9 0.0 1 1 5.1e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) Trep_dent_lipo PF09710.10 397 pKX686749_00033 - 54 0.034 13.1 1.0 1 1 5.2e-06 0.031 13.2 1.0 3 25 3 24 1 53 0.80 Treponema clustered lipoprotein (Trep_dent_lipo) La_HTH_kDCL PF18177.1 90 pKX686749_00033 - 54 0.19 12.0 0.0 1 1 3.6e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain PsbT PF01405.17 29 pKX686749_00033 - 54 1.1 9.1 5.2 1 1 0.00027 1.6 8.6 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pKX686749_00034 - 219 1.6e-52 178.5 0.5 1 1 1.9e-56 1.7e-52 178.4 0.5 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pKX686749_00034 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pKX686749_00035 - 296 4.2e-56 190.0 1.7 1 1 1.1e-59 6.7e-56 189.3 1.7 2 211 31 271 30 271 0.92 Conjugal transfer protein TraE PF05309.11 182 pKX686749_00035 - 296 0.022 14.2 0.1 1 1 6.6e-06 0.039 13.3 0.1 107 171 89 154 86 161 0.83 TraE protein Rho_RNA_bind PF07497.12 73 pKX686749_00035 - 296 0.068 13.0 0.0 1 2 1.5 9.2e+03 -3.4 0.0 9 22 79 92 76 97 0.79 Rho termination factor, RNA-binding domain Rho_RNA_bind PF07497.12 73 pKX686749_00035 - 296 0.068 13.0 0.0 2 2 3.3e-05 0.2 11.6 0.0 21 49 241 269 232 288 0.84 Rho termination factor, RNA-binding domain TrbI PF03743.14 187 pKX686749_00036 - 393 7.4e-48 162.9 0.1 1 2 0.76 6.9e+03 -3.3 0.3 136 154 141 167 120 173 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pKX686749_00036 - 393 7.4e-48 162.9 0.1 2 2 8.2e-52 7.4e-48 162.9 0.1 1 187 196 377 196 377 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pKX686749_00036 - 393 0.044 12.9 0.1 1 1 7.7e-06 0.069 12.2 0.1 29 81 322 374 303 379 0.85 HaeIII restriction endonuclease T2SSE PF00437.20 273 pKX686749_00037 - 335 7.7e-55 185.9 0.0 1 1 1.5e-57 8.9e-55 185.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pKX686749_00037 - 335 7.4e-05 23.3 0.0 1 1 2.6e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pKX686749_00037 - 335 0.00012 21.6 0.0 1 1 3e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pKX686749_00037 - 335 0.00028 20.5 0.0 1 1 8.8e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pKX686749_00037 - 335 0.0014 18.9 0.0 1 1 4.5e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 pKX686749_00037 - 335 0.0014 18.4 0.0 1 1 3.9e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pKX686749_00037 - 335 0.0023 17.7 0.0 1 1 9.2e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pKX686749_00037 - 335 0.0035 17.3 0.0 1 1 1.2e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pKX686749_00037 - 335 0.0055 15.7 0.0 1 1 1.3e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pKX686749_00037 - 335 0.0073 16.2 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pKX686749_00037 - 335 0.0087 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pKX686749_00037 - 335 0.0092 15.9 0.0 1 1 2.3e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pKX686749_00037 - 335 0.019 15.1 0.0 1 1 6.1e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain AAA_14 PF13173.6 131 pKX686749_00037 - 335 0.02 14.9 0.1 1 2 3 1.8e+03 -1.1 0.0 73 104 35 65 15 73 0.83 AAA domain AAA_14 PF13173.6 131 pKX686749_00037 - 335 0.02 14.9 0.1 2 2 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain TrwB_AAD_bind PF10412.9 386 pKX686749_00037 - 335 0.021 13.8 0.0 1 1 5.9e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.6 61 pKX686749_00037 - 335 0.024 14.4 0.0 1 1 8.8e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain ResIII PF04851.15 171 pKX686749_00037 - 335 0.026 14.5 0.0 1 1 9.1e-05 0.053 13.5 0.0 5 50 147 186 132 244 0.73 Type III restriction enzyme, res subunit Sigma54_activat PF00158.26 168 pKX686749_00037 - 335 0.026 14.2 0.0 1 1 9.3e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pKX686749_00037 - 335 0.031 13.7 0.0 1 1 0.0001 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein ATP_bind_1 PF03029.17 241 pKX686749_00037 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 pKX686749_00037 - 335 0.045 14.1 0.0 1 1 0.00018 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 pKX686749_00037 - 335 0.045 13.0 0.0 1 1 0.00013 0.077 12.3 0.0 14 49 158 193 146 207 0.84 Zeta toxin PRK PF00485.18 197 pKX686749_00037 - 335 0.057 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pKX686749_00037 - 335 0.065 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pKX686749_00037 - 335 0.074 13.4 0.0 1 1 0.00019 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pKX686749_00037 - 335 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pKX686749_00037 - 335 0.1 12.6 0.5 1 1 0.00042 0.25 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 pKX686749_00037 - 335 0.11 12.4 0.1 1 1 0.0004 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pKX686749_00037 - 335 0.15 11.7 0.0 1 1 0.00041 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pKX686749_00037 - 335 0.15 11.8 0.0 1 1 0.00042 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pKX686749_00037 - 335 0.44 11.0 4.2 1 2 2.5 1.5e+03 -0.5 0.1 68 130 84 150 40 162 0.62 AAA domain AAA_23 PF13476.6 200 pKX686749_00037 - 335 0.44 11.0 4.2 2 2 0.00057 0.33 11.4 1.4 22 37 163 178 151 184 0.88 AAA domain T4SS-DNA_transf PF02534.14 469 pKX686749_00038 - 603 8.4e-104 348.0 0.1 1 1 2.6e-107 1.1e-103 347.5 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pKX686749_00038 - 603 3.5e-24 85.2 0.0 1 1 1.5e-27 6.8e-24 84.3 0.0 2 125 406 528 405 529 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pKX686749_00038 - 603 3.2e-15 55.9 0.0 1 2 1.6e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pKX686749_00038 - 603 3.2e-15 55.9 0.0 2 2 1.3e-13 5.8e-10 38.6 0.0 187 369 347 531 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 pKX686749_00038 - 603 0.19 11.8 0.2 1 1 7.4e-05 0.33 11.0 0.2 34 93 7 87 3 100 0.73 Putative Actinobacterial Holin-X, holin superfamily III Cag12 PF13117.6 97 pKX686749_00039 - 143 2.9e-16 59.8 0.3 1 1 4.1e-20 3.7e-16 59.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pKX686749_00039 - 143 0.078 12.8 0.4 1 1 2.3e-05 0.2 11.4 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 pKX686749_00040 - 252 3.9e-38 130.8 2.1 1 1 5.6e-42 5e-38 130.5 2.1 1 154 25 190 25 192 0.88 TrbM HpaB PF03241.13 202 pKX686749_00040 - 252 0.17 10.9 0.1 1 2 0.047 4.2e+02 -0.1 0.0 20 39 17 36 4 37 0.76 4-hydroxyphenylacetate 3-hydroxylase C terminal HpaB PF03241.13 202 pKX686749_00040 - 252 0.17 10.9 0.1 2 2 0.00011 1 8.4 0.0 56 101 116 161 102 164 0.88 4-hydroxyphenylacetate 3-hydroxylase C terminal PRELI PF04707.14 157 pKX686749_00041 - 265 0.024 14.4 1.8 1 2 0.36 2.2e+03 -1.7 0.1 9 129 34 41 5 72 0.53 PRELI-like family PRELI PF04707.14 157 pKX686749_00041 - 265 0.024 14.4 1.8 2 2 5.4e-06 0.032 14.0 0.3 96 155 83 147 78 149 0.87 PRELI-like family TACC_C PF05010.14 201 pKX686749_00041 - 265 1.7 8.4 10.4 1 1 0.00054 3.2 7.5 8.6 14 125 2 112 1 137 0.78 Transforming acidic coiled-coil-containing protein (TACC), C-terminal IFT20 PF14931.6 119 pKX686749_00041 - 265 3.6 7.8 9.8 1 3 0.08 4.8e+02 0.9 0.3 20 47 18 45 2 55 0.56 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 pKX686749_00041 - 265 3.6 7.8 9.8 2 3 0.00021 1.3 9.2 0.8 25 54 89 118 79 126 0.89 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 pKX686749_00041 - 265 3.6 7.8 9.8 3 3 0.026 1.6e+02 2.5 0.2 23 43 120 140 116 177 0.79 Intraflagellar transport complex B, subunit 20 CdhD PF03599.16 386 pKX686749_00042 - 246 0.002 16.9 0.0 1 1 5.3e-07 0.0031 16.3 0.0 269 358 39 127 30 136 0.86 CO dehydrogenase/acetyl-CoA synthase delta subunit Pox_RNA_pol PF03293.14 160 pKX686749_00042 - 246 0.012 15.3 0.9 1 1 4.5e-06 0.027 14.2 0.9 35 158 20 138 7 140 0.83 Poxvirus DNA-directed RNA polymerase, 18 kD subunit Redoxin PF08534.10 147 pKX686749_00042 - 246 0.059 13.1 0.5 1 2 0.079 4.7e+02 0.4 0.0 117 146 49 76 31 77 0.79 Redoxin Redoxin PF08534.10 147 pKX686749_00042 - 246 0.059 13.1 0.5 2 2 7.9e-05 0.47 10.2 0.1 49 76 184 213 178 230 0.79 Redoxin DUF1461 PF07314.11 189 pKX686749_00043 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) Topoisom_bac PF01131.20 413 pKX686749_00044 - 730 1.2e-96 324.2 8.2 1 1 1.5e-99 1.7e-96 323.8 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pKX686749_00044 - 730 1.8e-12 47.4 0.5 1 2 8.7e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pKX686749_00044 - 730 1.8e-12 47.4 0.5 2 2 3.9 4.4e+03 -2.0 0.0 38 56 537 556 489 567 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 pKX686749_00044 - 730 1.6e-08 34.1 15.1 1 2 3.7e-09 4.1e-06 26.5 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pKX686749_00044 - 730 1.6e-08 34.1 15.1 2 2 8.7e-05 0.098 12.5 2.4 3 27 683 710 681 719 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pKX686749_00044 - 730 1e-05 25.7 2.3 1 3 8.3 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pKX686749_00044 - 730 1e-05 25.7 2.3 2 3 0.00037 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pKX686749_00044 - 730 1e-05 25.7 2.3 3 3 3.8e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pKX686749_00044 - 730 0.012 15.7 1.3 1 2 0.0077 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pKX686749_00044 - 730 0.012 15.7 1.3 2 2 0.0045 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pKX686749_00044 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pKX686749_00044 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 pKX686749_00044 - 730 0.056 14.3 2.8 1 2 0.007 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pKX686749_00044 - 730 0.056 14.3 2.8 2 2 0.021 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pKX686749_00044 - 730 0.087 12.3 2.7 1 2 0.003 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pKX686749_00044 - 730 0.087 12.3 2.7 2 2 0.02 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 pKX686749_00044 - 730 0.088 13.1 4.5 1 2 0.00079 0.88 9.9 3.7 5 64 627 689 623 696 0.71 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pKX686749_00044 - 730 0.088 13.1 4.5 2 2 0.0023 2.6 8.4 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain EF-hand_8 PF13833.6 55 pKX686749_00044 - 730 0.088 12.7 0.0 1 1 0.00027 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair HTH_34 PF13601.6 80 pKX686749_00044 - 730 0.46 10.7 3.3 1 3 1.7 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pKX686749_00044 - 730 0.46 10.7 3.3 2 3 5 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pKX686749_00044 - 730 0.46 10.7 3.3 3 3 0.00076 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pKX686749_00044 - 730 0.55 9.9 3.0 1 2 0.03 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pKX686749_00044 - 730 0.55 9.9 3.0 2 2 0.011 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pKX686749_00044 - 730 0.63 10.0 3.8 1 2 0.0041 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pKX686749_00044 - 730 0.63 10.0 3.8 2 2 0.13 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pKX686749_00044 - 730 0.75 9.9 3.8 1 2 0.1 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pKX686749_00044 - 730 0.75 9.9 3.8 2 2 0.0039 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pKX686749_00044 - 730 6.9 6.5 8.0 1 2 0.046 51 3.7 2.5 15 31 629 645 627 660 0.79 PADR1 (NUC008) domain PADR1 PF08063.12 53 pKX686749_00044 - 730 6.9 6.5 8.0 2 2 0.016 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pKX686749_00044 - 730 8.4 6.4 6.5 1 2 0.01 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pKX686749_00044 - 730 8.4 6.4 6.5 2 2 0.088 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pKX686749_00045 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pKX686749_00045 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pKX686749_00047 - 639 2.9e-58 196.6 0.3 1 1 2e-61 4.1e-58 196.1 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pKX686749_00047 - 639 2.6e-23 82.1 0.0 1 2 1.4 2.8e+03 -1.9 0.0 81 97 63 79 58 99 0.70 Elongation factor G, domain IV EFG_IV PF03764.18 121 pKX686749_00047 - 639 2.6e-23 82.1 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pKX686749_00047 - 639 1.1e-16 60.6 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pKX686749_00047 - 639 2.2e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pKX686749_00047 - 639 1e-06 28.8 0.1 1 1 1.2e-09 2.4e-06 27.6 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pKX686749_00047 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pKX686749_00047 - 639 0.0095 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pKX686749_00047 - 639 0.021 14.1 0.1 1 1 2e-05 0.039 13.2 0.1 9 76 8 82 3 90 0.72 Septin AIG1 PF04548.16 212 pKX686749_00047 - 639 0.045 13.1 0.0 1 1 5.4e-05 0.11 11.8 0.0 32 62 51 81 43 109 0.83 AIG1 family CPT PF07931.12 174 pKX686749_00048 - 152 9.2e-06 25.6 0.0 1 1 2.5e-09 1.1e-05 25.3 0.0 59 172 26 143 5 145 0.81 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 130 pKX686749_00048 - 152 1.2e-05 25.9 0.0 1 1 3.5e-09 1.6e-05 25.5 0.0 44 124 15 106 2 112 0.79 AAA domain AAA_33 PF13671.6 143 pKX686749_00048 - 152 0.019 15.1 0.0 1 1 6.4e-06 0.029 14.5 0.0 55 136 35 115 4 117 0.79 AAA domain MKT1_N PF12247.8 90 pKX686749_00048 - 152 0.041 14.2 0.0 1 1 4.2e-05 0.19 12.1 0.0 14 51 10 45 8 122 0.88 Temperature dependent protein affecting M2 dsRNA replication APH PF01636.23 240 pKX686749_00049 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pKX686749_00049 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pKX686749_00049 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pKX686749_00049 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pKX686749_00049 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pKX686749_00049 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 pKX686749_00050 - 139 2.2e-51 174.9 0.1 1 1 1.4e-55 2.4e-51 174.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase Adenyl_transf PF04439.12 279 pKX686749_00051 - 137 1.1e-35 123.2 0.1 1 1 3.2e-38 1.3e-35 122.9 0.1 139 223 42 126 18 134 0.90 Streptomycin adenylyltransferase Zeta_toxin PF06414.12 199 pKX686749_00051 - 137 3.2e-06 26.6 0.0 1 1 8.8e-09 3.5e-06 26.4 0.0 18 60 6 47 2 88 0.88 Zeta toxin AAA_22 PF13401.6 137 pKX686749_00051 - 137 3.4e-06 27.4 0.0 1 1 9.3e-09 3.7e-06 27.3 0.0 4 57 3 58 1 96 0.84 AAA domain AAA PF00004.29 132 pKX686749_00051 - 137 1.6e-05 25.3 0.0 1 1 5.9e-08 2.4e-05 24.8 0.0 2 25 8 31 7 94 0.70 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 163 pKX686749_00051 - 137 2.2e-05 24.7 0.0 1 1 7.8e-08 3.1e-05 24.3 0.0 2 22 7 27 6 70 0.78 AAA domain AAA_18 PF13238.6 130 pKX686749_00051 - 137 3.3e-05 24.4 0.0 1 1 9.4e-08 3.8e-05 24.3 0.0 1 40 7 45 7 94 0.74 AAA domain AAA_33 PF13671.6 143 pKX686749_00051 - 137 9.9e-05 22.5 0.0 1 1 2.9e-07 0.00011 22.3 0.0 2 69 7 75 6 97 0.80 AAA domain AAA_16 PF13191.6 170 pKX686749_00051 - 137 0.00015 22.2 0.0 1 1 4.8e-07 0.00019 21.9 0.0 22 63 2 44 1 97 0.70 AAA ATPase domain DUF2075 PF09848.9 363 pKX686749_00051 - 137 0.0011 18.4 0.0 1 1 3.4e-06 0.0014 18.0 0.0 2 27 5 32 4 49 0.80 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 197 pKX686749_00051 - 137 0.0011 18.7 0.0 1 1 2.9e-06 0.0012 18.7 0.0 3 56 5 61 3 123 0.74 AAA domain AAA_19 PF13245.6 146 pKX686749_00051 - 137 0.0014 19.0 0.0 1 1 5.4e-06 0.0021 18.4 0.0 9 39 3 33 1 51 0.84 AAA domain AAA_14 PF13173.6 131 pKX686749_00051 - 137 0.0015 18.6 0.0 1 1 3.7e-06 0.0015 18.6 0.0 2 51 4 53 3 130 0.69 AAA domain KTI12 PF08433.10 272 pKX686749_00051 - 137 0.0015 18.1 0.0 1 1 3.9e-06 0.0016 18.0 0.0 3 42 6 46 5 92 0.84 Chromatin associated protein KTI12 ABC_tran PF00005.27 137 pKX686749_00051 - 137 0.0015 19.1 0.0 1 1 5.4e-06 0.0021 18.6 0.0 9 51 2 43 1 70 0.82 ABC transporter AAA_30 PF13604.6 192 pKX686749_00051 - 137 0.002 17.8 0.2 1 1 6.8e-06 0.0027 17.5 0.2 17 40 3 26 1 38 0.83 AAA domain TIP49 PF06068.13 351 pKX686749_00051 - 137 0.0023 17.2 0.0 1 1 8.3e-06 0.0033 16.7 0.0 50 95 4 48 1 52 0.80 TIP49 P-loop domain NTPase_1 PF03266.15 168 pKX686749_00051 - 137 0.0032 17.4 0.1 1 1 1.3e-05 0.005 16.8 0.1 2 41 7 49 6 58 0.73 NTPase ATPase PF06745.13 231 pKX686749_00051 - 137 0.0062 15.9 0.0 1 1 2.1e-05 0.0084 15.5 0.0 18 38 3 23 1 57 0.89 KaiC T2SSE PF00437.20 273 pKX686749_00051 - 137 0.0079 15.3 0.0 1 1 2.4e-05 0.0094 15.0 0.0 130 156 5 31 1 53 0.79 Type II/IV secretion system protein SRP54 PF00448.22 196 pKX686749_00051 - 137 0.014 15.0 0.0 1 1 5.6e-05 0.022 14.4 0.0 3 40 6 42 4 45 0.81 SRP54-type protein, GTPase domain RNA_helicase PF00910.22 107 pKX686749_00051 - 137 0.019 15.3 0.0 1 1 7.9e-05 0.032 14.6 0.0 1 36 7 43 7 74 0.67 RNA helicase NACHT PF05729.12 166 pKX686749_00051 - 137 0.021 14.7 0.1 1 1 0.00013 0.053 13.4 0.1 1 28 5 32 5 98 0.82 NACHT domain Hydin_ADK PF17213.3 198 pKX686749_00051 - 137 0.026 14.8 0.2 1 1 9e-05 0.036 14.4 0.2 2 22 7 27 6 31 0.92 Hydin Adenylate kinase-like domain Viral_helicase1 PF01443.18 234 pKX686749_00051 - 137 0.03 14.1 0.0 1 1 9.6e-05 0.038 13.7 0.0 1 38 7 40 7 61 0.73 Viral (Superfamily 1) RNA helicase RuvB_N PF05496.12 159 pKX686749_00051 - 137 0.032 14.0 0.0 1 1 0.00015 0.058 13.1 0.0 36 59 7 30 3 39 0.84 Holliday junction DNA helicase RuvB P-loop domain CPT PF07931.12 174 pKX686749_00051 - 137 0.032 14.1 0.0 1 1 0.00012 0.047 13.5 0.0 1 40 4 44 4 75 0.85 Chloramphenicol phosphotransferase-like protein AAA_25 PF13481.6 194 pKX686749_00051 - 137 0.034 13.7 0.1 1 1 0.00012 0.047 13.3 0.1 32 54 3 25 1 28 0.88 AAA domain NB-ARC PF00931.22 252 pKX686749_00051 - 137 0.035 13.3 0.0 1 1 0.00012 0.046 12.9 0.0 21 47 5 30 1 46 0.84 NB-ARC domain AAA_11 PF13086.6 261 pKX686749_00051 - 137 0.036 13.9 0.0 1 1 0.0001 0.04 13.7 0.0 16 41 3 28 1 65 0.79 AAA domain DnaB_C PF03796.15 255 pKX686749_00051 - 137 0.039 13.3 0.0 1 1 0.00013 0.052 12.9 0.0 17 47 2 32 1 41 0.84 DnaB-like helicase C terminal domain AAA_7 PF12775.7 181 pKX686749_00051 - 137 0.047 13.2 0.0 1 1 0.0002 0.08 12.5 0.0 31 64 2 35 1 45 0.84 P-loop containing dynein motor region ATPase_2 PF01637.18 233 pKX686749_00051 - 137 0.048 13.6 0.0 1 1 0.00013 0.051 13.5 0.0 19 70 3 59 1 125 0.76 ATPase domain predominantly from Archaea PhoH PF02562.16 205 pKX686749_00051 - 137 0.053 13.0 0.4 1 2 0.00029 0.12 11.9 0.1 18 43 3 28 1 36 0.81 PhoH-like protein PhoH PF02562.16 205 pKX686749_00051 - 137 0.053 13.0 0.4 2 2 4.3 1.7e+03 -1.7 0.0 189 200 85 96 71 100 0.75 PhoH-like protein Rad17 PF03215.15 186 pKX686749_00051 - 137 0.054 13.4 0.0 1 1 0.00018 0.071 13.0 0.0 45 70 4 29 1 61 0.84 Rad17 P-loop domain AAA_17 PF13207.6 136 pKX686749_00051 - 137 0.066 13.6 0.0 1 1 0.00025 0.099 13.1 0.0 1 21 10 30 10 56 0.86 AAA domain IstB_IS21 PF01695.17 178 pKX686749_00051 - 137 0.082 12.6 0.0 1 1 0.0003 0.12 12.1 0.0 48 70 5 27 1 43 0.85 IstB-like ATP binding protein Ploopntkinase3 PF18751.1 185 pKX686749_00051 - 137 0.091 12.7 0.0 1 1 0.00032 0.13 12.2 0.0 3 43 4 45 1 54 0.76 P-loop Nucleotide Kinase3 ATP-synt_ab PF00006.25 213 pKX686749_00051 - 137 0.11 12.2 0.0 1 1 0.00027 0.11 12.2 0.0 12 43 2 32 1 130 0.81 ATP synthase alpha/beta family, nucleotide-binding domain APS_kinase PF01583.20 158 pKX686749_00051 - 137 0.11 12.4 0.0 1 1 0.00042 0.17 11.8 0.0 1 26 3 28 3 49 0.82 Adenylylsulphate kinase IPT PF01745.16 233 pKX686749_00051 - 137 0.14 11.5 0.2 1 1 0.00053 0.21 10.9 0.2 3 25 6 28 4 34 0.89 Isopentenyl transferase AAA_3 PF07726.11 131 pKX686749_00051 - 137 0.16 11.8 0.0 1 1 0.00056 0.22 11.4 0.0 2 34 7 39 6 50 0.84 ATPase family associated with various cellular activities (AAA) GvpD PF07088.11 484 pKX686749_00051 - 137 0.16 10.6 0.0 1 1 0.00062 0.25 9.9 0.0 9 26 3 20 1 42 0.86 GvpD gas vesicle protein Sigma54_activat PF00158.26 168 pKX686749_00051 - 137 0.17 11.6 0.0 1 1 0.0006 0.24 11.1 0.0 25 51 7 33 1 41 0.83 Sigma-54 interaction domain ArsA_ATPase PF02374.15 305 pKX686749_00051 - 137 0.17 11.0 0.0 1 1 0.00056 0.22 10.7 0.0 2 28 5 30 4 43 0.81 Anion-transporting ATPase cobW PF02492.19 177 pKX686749_00051 - 137 0.18 11.4 0.0 1 1 0.00054 0.22 11.1 0.0 2 31 6 36 5 61 0.75 CobW/HypB/UreG, nucleotide-binding domain APH PF01636.23 240 pKX686749_00052 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pKX686749_00052 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pKX686749_00052 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pKX686749_00052 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family Radical_SAM PF04055.21 167 pKX686749_00053 - 379 1.3e-14 55.0 0.0 1 1 4.3e-18 2.6e-14 54.0 0.0 2 160 102 261 101 266 0.87 Radical SAM superfamily Fer4_14 PF13394.6 118 pKX686749_00053 - 379 4.9e-05 23.4 0.0 1 2 6.1e-08 0.00037 20.6 0.0 6 87 105 185 101 207 0.76 4Fe-4S single cluster domain Fer4_14 PF13394.6 118 pKX686749_00053 - 379 4.9e-05 23.4 0.0 2 2 0.19 1.1e+03 -0.3 0.0 60 96 297 333 293 358 0.63 4Fe-4S single cluster domain Fer4_12 PF13353.6 139 pKX686749_00053 - 379 0.048 13.9 0.2 1 1 1.6e-05 0.098 12.9 0.2 11 75 103 165 93 194 0.79 4Fe-4S single cluster domain APH PF01636.23 240 pKX931102_00001 - 297 1.9e-24 86.9 0.0 1 1 2.9e-28 2.6e-24 86.5 0.0 5 239 21 252 18 253 0.88 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pKX931102_00001 - 297 0.0013 18.3 1.5 1 2 1.5e-07 0.0013 18.3 1.5 67 175 111 211 89 225 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 pKX931102_00001 - 297 0.0013 18.3 1.5 2 2 0.46 4.1e+03 -2.9 0.0 24 24 256 256 238 296 0.47 Choline/ethanolamine kinase APH PF01636.23 240 pKX931103_00001 - 297 1.9e-24 86.9 0.0 1 1 2.9e-28 2.6e-24 86.5 0.0 5 239 21 252 18 253 0.88 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pKX931103_00001 - 297 0.0013 18.3 1.5 1 2 1.5e-07 0.0013 18.3 1.5 67 175 111 211 89 225 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 pKX931103_00001 - 297 0.0013 18.3 1.5 2 2 0.46 4.1e+03 -2.9 0.0 24 24 256 256 238 296 0.47 Choline/ethanolamine kinase APH PF01636.23 240 pKX931104_00001 - 297 1.9e-24 86.9 0.0 1 1 2.9e-28 2.6e-24 86.5 0.0 5 239 21 252 18 253 0.88 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pKX931104_00001 - 297 0.0013 18.3 1.5 1 2 1.5e-07 0.0013 18.3 1.5 67 175 111 211 89 225 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 pKX931104_00001 - 297 0.0013 18.3 1.5 2 2 0.46 4.1e+03 -2.9 0.0 24 24 256 256 238 296 0.47 Choline/ethanolamine kinase LysE PF01810.18 193 pMLDY01000008_00001 - 72 5.6e-05 22.7 0.0 1 1 2.2e-08 6.7e-05 22.4 0.0 36 94 5 63 3 70 0.90 LysE type translocator DUF1516 PF07457.11 108 pMLDY01000008_00001 - 72 0.002 18.3 0.3 1 1 7.1e-07 0.0021 18.2 0.3 39 83 7 49 1 61 0.82 Protein of unknown function (DUF1516) TerC PF03741.16 181 pMLDY01000008_00001 - 72 0.041 13.6 0.3 1 1 1.6e-05 0.047 13.4 0.3 39 90 8 60 3 70 0.73 Integral membrane protein TerC family DUF5305 PF17231.2 219 pMLDY01000008_00001 - 72 0.077 12.4 0.6 1 2 0.24 7.2e+02 -0.6 0.0 116 136 6 26 2 29 0.75 Family of unknown function (DUF5305) DUF5305 PF17231.2 219 pMLDY01000008_00001 - 72 0.077 12.4 0.6 2 2 3.4e-05 0.1 12.0 0.2 114 157 25 69 19 72 0.76 Family of unknown function (DUF5305) Saf_2TM PF18303.1 152 pMLDY01000008_00001 - 72 0.11 12.1 0.8 1 2 0.3 9.1e+02 -0.6 0.0 65 82 5 22 2 29 0.49 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pMLDY01000008_00001 - 72 0.11 12.1 0.8 2 2 4.5e-05 0.13 11.8 0.3 61 99 22 62 15 67 0.72 SAVED-fused 2TM effector domain PetL PF05115.14 31 pMLDY01000008_00001 - 72 3.4 7.7 9.7 1 2 0.011 33 4.6 1.8 10 29 6 25 4 25 0.84 Cytochrome B6-F complex subunit VI (PetL) PetL PF05115.14 31 pMLDY01000008_00001 - 72 3.4 7.7 9.7 2 2 0.0013 4 7.5 1.2 8 25 28 44 27 50 0.83 Cytochrome B6-F complex subunit VI (PetL) Flp1_like PF16982.5 49 pMLDY01000008_00002 - 132 0.015 14.7 2.9 1 3 1.7e-06 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pMLDY01000008_00002 - 132 0.015 14.7 2.9 2 3 1.2 1e+04 -4.0 0.3 16 22 67 73 66 76 0.49 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pMLDY01000008_00002 - 132 0.015 14.7 2.9 3 3 0.91 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain BRI3BP PF14965.6 180 pMLDY01000008_00002 - 132 0.26 10.8 3.9 1 1 3.1e-05 0.28 10.7 3.5 59 106 51 101 32 120 0.81 Negative regulator of p53/TP53 YopX PF09643.10 131 pMLDY01000008_00004 - 148 1.9e-14 53.8 7.2 1 1 5.2e-17 4.7e-13 49.3 7.2 28 131 30 142 7 142 0.59 YopX protein RE_ApaLI PF09499.10 189 pMLDY01000008_00004 - 148 0.0081 15.9 0.6 1 1 9.3e-07 0.0083 15.9 0.6 48 117 58 129 21 148 0.79 ApaLI-like restriction endonuclease DUF2583 PF10762.9 88 pMLDY01000008_00006 - 117 0.67 10.4 3.8 1 2 0.00097 17 5.9 0.8 15 58 3 46 1 53 0.84 Protein of unknown function (DUF2583) DUF2583 PF10762.9 88 pMLDY01000008_00006 - 117 0.67 10.4 3.8 2 2 0.00084 15 6.1 0.7 14 58 48 98 43 102 0.75 Protein of unknown function (DUF2583) Topoisom_bac PF01131.20 413 pMLDY01000008_00009 - 730 3.9e-97 325.9 7.9 1 1 4.8e-100 5.4e-97 325.4 7.9 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pMLDY01000008_00009 - 730 1.9e-12 47.3 0.4 1 2 9.2e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pMLDY01000008_00009 - 730 1.9e-12 47.3 0.4 2 2 3.9 4.4e+03 -2.0 0.0 38 56 537 556 489 567 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 pMLDY01000008_00009 - 730 1.6e-08 34.1 15.1 1 2 3.7e-09 4.1e-06 26.5 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pMLDY01000008_00009 - 730 1.6e-08 34.1 15.1 2 2 8.7e-05 0.098 12.5 2.4 3 27 683 710 681 719 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pMLDY01000008_00009 - 730 1e-05 25.7 2.3 1 3 8.3 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pMLDY01000008_00009 - 730 1e-05 25.7 2.3 2 3 0.00037 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pMLDY01000008_00009 - 730 1e-05 25.7 2.3 3 3 3.8e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pMLDY01000008_00009 - 730 0.012 15.7 1.3 1 2 0.0077 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pMLDY01000008_00009 - 730 0.012 15.7 1.3 2 2 0.0045 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pMLDY01000008_00009 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pMLDY01000008_00009 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 pMLDY01000008_00009 - 730 0.055 14.3 2.8 1 2 0.007 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pMLDY01000008_00009 - 730 0.055 14.3 2.8 2 2 0.021 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pMLDY01000008_00009 - 730 0.087 12.3 2.7 1 2 0.003 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pMLDY01000008_00009 - 730 0.087 12.3 2.7 2 2 0.02 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pMLDY01000008_00009 - 730 0.089 12.7 0.0 1 1 0.00027 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pMLDY01000008_00009 - 730 0.089 13.1 4.5 1 2 0.00079 0.88 9.9 3.7 5 64 627 689 623 696 0.71 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pMLDY01000008_00009 - 730 0.089 13.1 4.5 2 2 0.0023 2.6 8.4 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pMLDY01000008_00009 - 730 0.44 10.8 3.3 1 3 1.7 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pMLDY01000008_00009 - 730 0.44 10.8 3.3 2 3 5 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pMLDY01000008_00009 - 730 0.44 10.8 3.3 3 3 0.00076 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pMLDY01000008_00009 - 730 0.55 9.9 3.0 1 2 0.03 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pMLDY01000008_00009 - 730 0.55 9.9 3.0 2 2 0.011 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pMLDY01000008_00009 - 730 0.63 10.0 3.8 1 2 0.0041 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pMLDY01000008_00009 - 730 0.63 10.0 3.8 2 2 0.13 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pMLDY01000008_00009 - 730 0.73 9.9 3.8 1 2 0.1 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pMLDY01000008_00009 - 730 0.73 9.9 3.8 2 2 0.0039 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pMLDY01000008_00009 - 730 7 6.5 8.0 1 2 0.046 51 3.7 2.5 15 31 629 645 627 660 0.79 PADR1 (NUC008) domain PADR1 PF08063.12 53 pMLDY01000008_00009 - 730 7 6.5 8.0 2 2 0.016 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pMLDY01000008_00009 - 730 8.4 6.4 6.5 1 2 0.01 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pMLDY01000008_00009 - 730 8.4 6.4 6.5 2 2 0.088 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 pMLDY01000008_00010 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pMLDY01000008_00010 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 pMLDY01000008_00012 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pMLDY01000008_00012 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pMLDY01000008_00012 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pMLDY01000008_00012 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pMLDY01000008_00012 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pMLDY01000008_00012 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 pMLDY01000008_00013 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM Cag12 PF13117.6 97 pMLDY01000008_00014 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pMLDY01000008_00014 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pMLDY01000008_00014 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pMLDY01000008_00014 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pMLDY01000008_00014 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 pMLDY01000008_00015 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pMLDY01000008_00015 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pMLDY01000008_00015 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pMLDY01000008_00015 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pMLDY01000008_00015 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 pMLDY01000008_00016 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pMLDY01000008_00016 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pMLDY01000008_00016 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pMLDY01000008_00016 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pMLDY01000008_00016 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pMLDY01000008_00016 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pMLDY01000008_00016 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pMLDY01000008_00016 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pMLDY01000008_00016 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pMLDY01000008_00016 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pMLDY01000008_00016 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pMLDY01000008_00016 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pMLDY01000008_00016 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pMLDY01000008_00016 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pMLDY01000008_00016 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pMLDY01000008_00016 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pMLDY01000008_00016 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pMLDY01000008_00016 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pMLDY01000008_00016 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pMLDY01000008_00016 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pMLDY01000008_00016 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pMLDY01000008_00016 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pMLDY01000008_00016 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pMLDY01000008_00016 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pMLDY01000008_00016 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pMLDY01000008_00016 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pMLDY01000008_00016 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pMLDY01000008_00016 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pMLDY01000008_00016 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pMLDY01000008_00016 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pMLDY01000008_00016 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pMLDY01000008_00016 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 pMLDY01000008_00017 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pMLDY01000008_00017 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 pMLDY01000008_00018 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pMLDY01000008_00018 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pMLDY01000008_00018 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 pMLDY01000008_00019 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pMLDY01000008_00019 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 pMLDY01000008_00020 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pMLDY01000008_00020 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein TrbL PF04610.14 215 pMLDY01000008_00021 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pMLDY01000008_00021 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pMLDY01000008_00021 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pMLDY01000008_00021 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pMLDY01000008_00021 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 T4SS PF07996.11 197 pMLDY01000008_00022 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pMLDY01000008_00022 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pMLDY01000008_00022 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pMLDY01000008_00022 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pMLDY01000008_00022 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pMLDY01000008_00022 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pMLDY01000008_00022 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pMLDY01000008_00022 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pMLDY01000008_00022 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 pMLDY01000008_00022 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pMLDY01000008_00022 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pMLDY01000008_00022 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pMLDY01000008_00022 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 pMLDY01000008_00022 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pMLDY01000008_00022 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain IF2_N PF04760.15 54 pMLDY01000008_00023 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pMLDY01000008_00023 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pMLDY01000008_00023 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pMLDY01000008_00023 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pMLDY01000008_00023 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pMLDY01000008_00023 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pMLDY01000008_00023 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor SSB PF00436.25 104 pMLDY01000008_00024 - 141 1.5e-25 89.2 0.1 1 1 1e-29 1.8e-25 88.9 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3895 PF13034.6 76 pMLDY01000008_00025 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 pMLDY01000008_00025 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) Phage_pRha PF09669.10 88 pMLDY01000008_00026 - 185 6.7e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pMLDY01000008_00026 - 185 0.0015 18.6 0.0 1 1 8.6e-07 0.0031 17.6 0.0 23 90 27 94 21 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pMLDY01000008_00026 - 185 0.026 14.1 0.3 1 2 0.05 1.8e+02 1.6 0.1 80 118 33 71 5 80 0.74 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pMLDY01000008_00026 - 185 0.026 14.1 0.3 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pMLDY01000008_00026 - 185 0.081 12.9 0.1 1 1 6.1e-05 0.22 11.5 0.0 77 131 80 130 69 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pMLDY01000008_00026 - 185 0.83 9.7 7.1 1 3 0.019 69 3.6 0.1 40 53 12 25 3 29 0.83 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pMLDY01000008_00026 - 185 0.83 9.7 7.1 2 3 0.0022 7.9 6.6 0.9 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pMLDY01000008_00026 - 185 0.83 9.7 7.1 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 CagE_TrbE_VirB PF03135.14 206 pMLDY01000008_00027 - 922 4.1e-51 174.0 0.4 1 1 2e-54 9.1e-51 172.9 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pMLDY01000008_00027 - 922 7.7e-21 74.1 0.9 1 1 3.1e-24 1.4e-20 73.3 0.9 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 pMLDY01000008_00027 - 922 2.9e-07 29.8 0.9 1 1 1.5e-10 6.6e-07 28.6 0.9 23 321 547 846 542 860 0.73 AAA-like domain DUF87 PF01935.17 227 pMLDY01000008_00027 - 922 0.013 15.6 3.4 1 5 0.67 3e+03 -1.9 0.2 134 201 188 252 133 281 0.47 Helicase HerA, central domain DUF87 PF01935.17 227 pMLDY01000008_00027 - 922 0.013 15.6 3.4 2 5 0.9 4e+03 -2.4 0.0 87 124 263 298 243 301 0.77 Helicase HerA, central domain DUF87 PF01935.17 227 pMLDY01000008_00027 - 922 0.013 15.6 3.4 3 5 0.00034 1.5 8.8 0.0 26 49 548 571 539 598 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 pMLDY01000008_00027 - 922 0.013 15.6 3.4 4 5 0.0067 30 4.6 0.1 100 163 638 700 610 731 0.79 Helicase HerA, central domain DUF87 PF01935.17 227 pMLDY01000008_00027 - 922 0.013 15.6 3.4 5 5 0.36 1.6e+03 -1.1 0.0 43 108 751 811 747 910 0.65 Helicase HerA, central domain TrbC PF04956.13 99 pMLDY01000008_00028 - 87 6.2e-13 48.8 6.8 1 1 7.4e-17 6.6e-13 48.7 6.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pMLDY01000008_00028 - 87 0.61 9.9 6.3 1 1 0.00015 1.3 8.9 6.2 108 135 60 87 10 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pMLDY01000008_00030 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pMLDY01000008_00030 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 Resolvase PF00239.21 146 pMLDY01000008_00031 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pMLDY01000008_00031 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 pMLDY01000008_00031 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pMLDY01000008_00031 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pMLDY01000008_00031 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pMLDY01000008_00031 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pMLDY01000008_00031 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain AAA_25 PF13481.6 194 pMLDY01000008_00032 - 597 5.4e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pMLDY01000008_00032 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pMLDY01000008_00032 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pMLDY01000008_00032 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pMLDY01000008_00032 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pMLDY01000008_00032 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 pMLDY01000008_00032 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pMLDY01000008_00032 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pMLDY01000008_00032 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pMLDY01000008_00032 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pMLDY01000008_00032 - 597 0.37 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pMLDY01000008_00032 - 597 0.37 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pMLDY01000008_00032 - 597 0.37 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) HicA_toxin PF07927.12 58 pMLDY01000008_00033 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pMLDY01000008_00034 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 pMLDY01000008_00036 - 92 0.0052 16.8 2.6 1 1 7.7e-07 0.0069 16.4 2.6 34 88 27 83 25 86 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2633 PF11119.8 57 pMLDY01000008_00036 - 92 0.56 10.1 4.1 1 2 0.44 4e+03 -2.2 0.0 8 15 7 14 5 18 0.76 Protein of unknown function (DUF2633) DUF2633 PF11119.8 57 pMLDY01000008_00036 - 92 0.56 10.1 4.1 2 2 0.00023 2 8.4 4.2 11 33 34 57 27 60 0.83 Protein of unknown function (DUF2633) UBA_6 PF18039.1 42 pMLDY01000008_00037 - 35 0.027 14.4 0.0 1 1 4.8e-06 0.028 14.3 0.0 4 28 2 26 1 31 0.92 UBA-like domain DUF3606 PF12244.8 54 pMLDY01000008_00037 - 35 0.045 13.7 0.0 1 1 7.6e-06 0.045 13.7 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pMLDY01000008_00037 - 35 0.068 13.6 0.0 1 1 1.1e-05 0.068 13.6 0.0 1 22 1 22 1 33 0.95 Cell division protein ZapB DUF4223 PF13978.6 54 pMLDY01000008_00038 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pMLDY01000008_00038 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) Toprim_3 PF13362.6 95 pMLDY01000008_00039 - 408 2.1e-08 34.4 0.0 1 1 6.4e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Toprim_4 PF13662.6 89 pMLDY01000008_00039 - 408 0.14 12.7 0.1 1 1 5.1e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pMLDY01000008_00039 - 408 0.19 12.3 4.2 1 2 0.023 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pMLDY01000008_00039 - 408 0.19 12.3 4.2 2 2 0.00023 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF2004 PF09406.10 106 pMLDY01000008_00040 - 219 0.12 12.7 3.0 1 2 3.5e-05 0.62 10.4 1.0 9 78 46 117 40 128 0.90 Protein of unknown function (DUF2004) DUF2004 PF09406.10 106 pMLDY01000008_00040 - 219 0.12 12.7 3.0 2 2 0.014 2.4e+02 2.1 0.0 36 78 164 209 131 213 0.86 Protein of unknown function (DUF2004) Sds3 PF08598.11 218 pMLDY01000008_00042 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pMLDY01000008_00042 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pMLDY01000008_00042 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pMLDY01000008_00042 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pMLDY01000008_00042 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 pMLDY01000008_00043 - 183 0.00011 22.1 5.7 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pMLDY01000008_00043 - 183 0.00011 22.1 5.7 2 3 0.49 1.8e+03 -0.9 0.0 21 36 77 92 71 97 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pMLDY01000008_00043 - 183 0.00011 22.1 5.7 3 3 1.9e-05 0.067 13.2 0.7 15 62 107 156 95 161 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pMLDY01000008_00043 - 183 0.058 13.5 1.9 1 1 2.4e-05 0.087 12.9 1.4 56 131 20 103 9 116 0.67 Stage III sporulation protein AB (spore_III_AB) DndE PF08870.11 112 pMLDY01000008_00043 - 183 0.31 11.3 5.7 1 2 0.075 2.7e+02 1.9 0.1 2 22 9 29 8 37 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pMLDY01000008_00043 - 183 0.31 11.3 5.7 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE NLRC4_HD PF17889.1 107 pMLDY01000008_00043 - 183 0.53 10.6 5.9 1 2 0.0007 2.5 8.5 2.0 14 90 6 82 3 98 0.74 NLRC4 helical domain NLRC4_HD PF17889.1 107 pMLDY01000008_00043 - 183 0.53 10.6 5.9 2 2 0.017 60 4.0 0.1 45 88 102 143 96 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 pMLDY01000008_00043 - 183 2 8.5 7.9 1 3 0.29 1e+03 -0.2 0.1 40 55 12 27 4 56 0.73 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pMLDY01000008_00043 - 183 2 8.5 7.9 2 3 0.061 2.2e+02 2.0 0.5 10 46 55 91 50 97 0.85 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pMLDY01000008_00043 - 183 2 8.5 7.9 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 Relaxase PF03432.14 242 pMLDY01000008_00044 - 462 4.3e-09 36.3 8.2 1 2 2.4e-13 4.3e-09 36.3 8.2 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pMLDY01000008_00044 - 462 4.3e-09 36.3 8.2 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain DUF2768 PF10966.8 58 pMLDY01000008_00045 - 235 0.053 14.0 0.6 1 1 5.9e-06 0.11 13.0 0.6 23 52 204 233 202 234 0.91 Protein of unknown function (DUF2768) SNF2_N PF00176.23 350 pMLDY01000008_00046 - 1932 3e-16 59.1 1.8 1 3 1.4e-19 5.1e-16 58.3 0.1 58 245 1018 1272 957 1313 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pMLDY01000008_00046 - 1932 3e-16 59.1 1.8 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pMLDY01000008_00046 - 1932 3e-16 59.1 1.8 3 3 0.85 3.1e+03 -3.4 0.0 171 200 1877 1907 1856 1920 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pMLDY01000008_00046 - 1932 7.5e-08 32.6 8.9 1 2 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pMLDY01000008_00046 - 1932 7.5e-08 32.6 8.9 2 2 0.35 1.2e+03 -0.7 5.5 29 122 1793 1909 1747 1930 0.68 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pMLDY01000008_00046 - 1932 9.6e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pMLDY01000008_00046 - 1932 9.6e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pMLDY01000008_00046 - 1932 8.1e-06 25.7 2.5 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 pMLDY01000008_00046 - 1932 8.1e-06 25.7 2.5 2 2 0.068 2.4e+02 1.4 0.1 119 151 1882 1916 1830 1929 0.69 DEAD/DEAH box helicase Eco57I PF07669.11 106 pMLDY01000008_00046 - 1932 2.6e-05 24.7 0.7 1 2 6.5e-08 0.00023 21.6 0.2 3 103 371 471 369 474 0.81 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pMLDY01000008_00046 - 1932 2.6e-05 24.7 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase RHH_7 PF16777.5 74 pMLDY01000008_00047 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 pMLDY01000008_00047 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal AAA_31 PF13614.6 177 pMLDY01000008_00048 - 186 5.3e-05 23.2 0.6 1 2 2.2e-07 0.001 19.1 0.1 3 26 2 25 1 34 0.91 AAA domain AAA_31 PF13614.6 177 pMLDY01000008_00048 - 186 5.3e-05 23.2 0.6 2 2 0.022 98 2.8 0.0 116 156 52 92 24 105 0.69 AAA domain CbiA PF01656.23 128 pMLDY01000008_00048 - 186 0.0012 18.9 0.5 1 1 1.8e-06 0.0079 16.3 0.5 1 25 3 27 3 185 0.69 CobQ/CobB/MinD/ParA nucleotide binding domain Mur_ligase_C PF02875.21 91 pMLDY01000008_00048 - 186 0.062 13.6 0.0 1 1 2.4e-05 0.11 12.8 0.0 21 78 84 138 70 147 0.84 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pMLDY01000008_00048 - 186 0.18 11.3 0.0 1 1 5.8e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pMLDY01000008_00049 - 88 0.00028 21.0 1.6 1 1 5.9e-08 0.00035 20.7 1.6 51 74 44 66 28 83 0.87 T-antigen specific domain CEBP_ZZ PF16366.5 61 pMLDY01000008_00049 - 88 0.022 15.0 2.6 1 1 5e-06 0.03 14.6 2.6 13 53 28 66 25 74 0.79 Cytoplasmic polyadenylation element-binding protein ZZ domain DUF1272 PF06906.11 57 pMLDY01000008_00049 - 88 0.049 13.7 3.8 1 1 1.2e-05 0.074 13.1 3.8 8 39 29 58 26 65 0.90 Protein of unknown function (DUF1272) Lip_prot_lig_C PF10437.9 85 pMLDZ01000009_00001 - 126 0.048 13.6 3.7 1 2 0.013 2.3e+02 1.9 0.0 56 83 26 51 12 53 0.77 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pMLDZ01000009_00001 - 126 0.048 13.6 3.7 2 2 6.8e-06 0.12 12.4 3.0 2 83 39 123 38 124 0.85 Bacterial lipoate protein ligase C-terminus EptA_B_N PF08019.12 152 pMLDZ01000009_00003 - 135 0.12 12.3 10.8 1 2 8.8e-06 0.053 13.4 1.6 98 144 6 52 2 59 0.86 Phosphoethanolamine transferase EptA/EptB EptA_B_N PF08019.12 152 pMLDZ01000009_00003 - 135 0.12 12.3 10.8 2 2 0.0055 33 4.3 1.6 70 115 75 120 70 134 0.65 Phosphoethanolamine transferase EptA/EptB FeoB_associated PF12669.7 44 pMLDZ01000009_00003 - 135 1.9 9.0 0.0 1 3 0.13 7.6e+02 0.6 1.7 9 17 9 18 7 28 0.50 FeoB-associated Cys-rich membrane protein FeoB_associated PF12669.7 44 pMLDZ01000009_00003 - 135 1.9 9.0 0.0 2 3 0.39 2.3e+03 -0.9 0.1 12 23 57 68 54 73 0.66 FeoB-associated Cys-rich membrane protein FeoB_associated PF12669.7 44 pMLDZ01000009_00003 - 135 1.9 9.0 0.0 3 3 0.00031 1.9 9.0 0.0 2 26 106 132 105 134 0.81 FeoB-associated Cys-rich membrane protein DUF2070 PF09843.9 564 pMLDZ01000009_00003 - 135 7.9 4.6 18.3 1 1 0.0016 9.6 4.4 18.3 73 163 11 117 2 128 0.61 Predicted membrane protein (DUF2070) Topoisom_bac PF01131.20 413 pMLDZ01000009_00006 - 730 5.8e-97 325.3 7.7 1 1 7.6e-100 8e-97 324.8 7.7 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pMLDZ01000009_00006 - 730 1.8e-12 47.4 0.4 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pMLDZ01000009_00006 - 730 1.8e-12 47.4 0.4 2 2 4.1 4.4e+03 -2.0 0.0 38 56 537 556 489 567 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 pMLDZ01000009_00006 - 730 1.4e-08 34.4 14.8 1 2 3.9e-09 4.1e-06 26.5 5.0 2 37 628 665 627 667 0.86 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pMLDZ01000009_00006 - 730 1.4e-08 34.4 14.8 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pMLDZ01000009_00006 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pMLDZ01000009_00006 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pMLDZ01000009_00006 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pMLDZ01000009_00006 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pMLDZ01000009_00006 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pMLDZ01000009_00006 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pMLDZ01000009_00006 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 pMLDZ01000009_00006 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pMLDZ01000009_00006 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pMLDZ01000009_00006 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pMLDZ01000009_00006 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pMLDZ01000009_00006 - 730 0.088 12.7 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pMLDZ01000009_00006 - 730 0.089 13.1 4.5 1 2 0.00084 0.88 9.9 3.7 5 64 627 689 623 696 0.71 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pMLDZ01000009_00006 - 730 0.089 13.1 4.5 2 2 0.0025 2.6 8.4 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain FLYWCH PF04500.16 62 pMLDZ01000009_00006 - 730 0.14 12.3 3.1 1 2 0.19 2e+02 2.2 0.0 25 42 644 660 636 670 0.79 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pMLDZ01000009_00006 - 730 0.14 12.3 3.1 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain HTH_34 PF13601.6 80 pMLDZ01000009_00006 - 730 0.47 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pMLDZ01000009_00006 - 730 0.47 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pMLDZ01000009_00006 - 730 0.47 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pMLDZ01000009_00006 - 730 0.55 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pMLDZ01000009_00006 - 730 0.55 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pMLDZ01000009_00006 - 730 0.63 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pMLDZ01000009_00006 - 730 0.63 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pMLDZ01000009_00006 - 730 0.73 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pMLDZ01000009_00006 - 730 0.73 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pMLDZ01000009_00006 - 730 7 6.5 8.0 1 2 0.049 51 3.7 2.5 15 31 629 645 627 660 0.79 PADR1 (NUC008) domain PADR1 PF08063.12 53 pMLDZ01000009_00006 - 730 7 6.5 8.0 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pMLDZ01000009_00006 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pMLDZ01000009_00006 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type Redoxin PF08534.10 147 pMLDZ01000009_00007 - 206 0.055 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pMLDZ01000009_00007 - 206 0.055 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin PRELI PF04707.14 157 pMLDZ01000009_00008 - 265 0.039 13.8 0.5 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pMLDZ01000009_00008 - 265 0.039 13.8 0.5 2 2 6.5e-06 0.039 13.8 0.5 96 155 83 147 69 149 0.85 PRELI-like family DUF2304 PF10066.9 106 pMLDZ01000009_00008 - 265 0.1 12.8 0.9 1 1 4e-05 0.24 11.6 0.9 42 101 167 226 165 231 0.94 Uncharacterized conserved protein (DUF2304) Rsd_AlgQ PF04353.13 150 pMLDZ01000009_00008 - 265 1.3 8.9 6.1 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pMLDZ01000009_00008 - 265 1.3 8.9 6.1 2 3 7.4e-05 0.44 10.5 1.9 42 108 120 185 89 189 0.81 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pMLDZ01000009_00008 - 265 1.3 8.9 6.1 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ TrbM PF07424.11 156 pMLDZ01000009_00009 - 254 2.6e-35 121.7 1.4 1 1 2e-39 3.6e-35 121.2 1.4 1 154 24 192 24 194 0.86 TrbM Cag12 PF13117.6 97 pMLDZ01000009_00010 - 145 5.5e-17 62.1 0.4 1 1 1.2e-20 6.9e-17 61.8 0.4 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pMLDZ01000009_00010 - 145 0.068 13.0 0.2 1 1 3.3e-05 0.19 11.5 0.2 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pMLDZ01000009_00010 - 145 3.9 7.4 6.0 1 2 0.00075 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pMLDZ01000009_00010 - 145 3.9 7.4 6.0 2 2 0.16 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) T4SS-DNA_transf PF02534.14 469 pMLDZ01000009_00011 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pMLDZ01000009_00011 - 603 9.9e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pMLDZ01000009_00011 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pMLDZ01000009_00011 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pMLDZ01000009_00011 - 603 0.046 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain T2SSE PF00437.20 273 pMLDZ01000009_00012 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pMLDZ01000009_00012 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pMLDZ01000009_00012 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pMLDZ01000009_00012 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pMLDZ01000009_00012 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pMLDZ01000009_00012 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pMLDZ01000009_00012 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pMLDZ01000009_00012 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pMLDZ01000009_00012 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pMLDZ01000009_00012 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pMLDZ01000009_00012 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pMLDZ01000009_00012 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pMLDZ01000009_00012 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pMLDZ01000009_00012 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pMLDZ01000009_00012 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pMLDZ01000009_00012 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pMLDZ01000009_00012 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pMLDZ01000009_00012 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pMLDZ01000009_00012 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pMLDZ01000009_00012 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pMLDZ01000009_00012 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pMLDZ01000009_00012 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pMLDZ01000009_00012 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pMLDZ01000009_00012 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pMLDZ01000009_00012 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pMLDZ01000009_00012 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pMLDZ01000009_00012 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pMLDZ01000009_00012 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pMLDZ01000009_00012 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pMLDZ01000009_00012 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pMLDZ01000009_00012 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pMLDZ01000009_00012 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain TrbI PF03743.14 187 pMLDZ01000009_00013 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pMLDZ01000009_00013 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease CagX PF03524.15 211 pMLDZ01000009_00014 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pMLDZ01000009_00014 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pMLDZ01000009_00014 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) VirB8 PF04335.13 214 pMLDZ01000009_00015 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pMLDZ01000009_00015 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C Trep_dent_lipo PF09710.10 397 pMLDZ01000009_00016 - 72 0.035 13.0 0.0 1 1 3.9e-06 0.035 13.0 0.0 3 24 20 40 18 68 0.82 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pMLDZ01000009_00016 - 72 1.5 8.6 5.2 1 1 0.00029 2.6 7.9 5.2 8 20 22 34 22 35 0.94 Photosystem II reaction centre T protein TrbL PF04610.14 215 pMLDZ01000009_00017 - 332 8.7e-31 107.4 31.2 1 2 4.8e-35 8.7e-31 107.4 31.2 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pMLDZ01000009_00017 - 332 8.7e-31 107.4 31.2 2 2 0.27 4.8e+03 -2.9 0.1 60 71 288 299 266 328 0.51 TrbL/VirB6 plasmid conjugal transfer protein T4SS PF07996.11 197 pMLDZ01000009_00018 - 323 2.2e-28 100.0 14.0 1 1 1.1e-31 2.9e-28 99.6 14.0 1 194 94 298 94 301 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pMLDZ01000009_00018 - 323 0.0037 17.4 0.4 1 2 0.84 2.1e+03 -1.1 0.0 30 54 134 158 122 180 0.76 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pMLDZ01000009_00018 - 323 0.0037 17.4 0.4 2 2 5.9e-06 0.015 15.4 0.1 18 82 195 259 186 263 0.92 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pMLDZ01000009_00018 - 323 0.0089 16.7 5.2 1 2 0.048 1.2e+02 3.3 0.5 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pMLDZ01000009_00018 - 323 0.0089 16.7 5.2 2 2 3.5e-06 0.0089 16.7 5.2 47 128 219 318 203 322 0.76 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pMLDZ01000009_00018 - 323 0.064 12.8 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pMLDZ01000009_00018 - 323 0.064 12.8 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pMLDZ01000009_00018 - 323 0.07 13.8 0.9 1 2 2 5e+03 -1.8 0.0 55 72 124 141 101 171 0.62 von Willebrand factor type A domain VWA_2 PF13519.6 107 pMLDZ01000009_00018 - 323 0.07 13.8 0.9 2 2 2.7e-05 0.07 13.8 0.9 32 84 209 270 203 295 0.83 von Willebrand factor type A domain DHR10 PF18595.1 117 pMLDZ01000009_00018 - 323 5.7 7.0 14.8 1 2 0.1 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pMLDZ01000009_00018 - 323 5.7 7.0 14.8 2 2 0.00026 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain THOC7 PF05615.13 132 pMLDZ01000009_00018 - 323 5.8 7.2 12.9 1 2 0.00067 1.7 8.9 0.3 57 107 101 151 97 175 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pMLDZ01000009_00018 - 323 5.8 7.2 12.9 2 2 0.28 7.2e+02 0.4 6.6 15 71 230 294 215 315 0.59 Tho complex subunit 7 IF2_N PF04760.15 54 pMLDZ01000009_00019 - 91 6.5e-05 22.7 5.8 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pMLDZ01000009_00019 - 91 6.5e-05 22.7 5.8 2 2 0.0075 34 4.4 0.1 31 53 57 79 56 80 0.87 Translation initiation factor IF-2, N-terminal region HTH_16 PF12645.7 65 pMLDZ01000009_00019 - 91 0.013 15.5 1.9 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pMLDZ01000009_00019 - 91 0.013 15.5 1.9 2 2 2.8e-05 0.13 12.4 0.3 15 54 44 82 40 85 0.87 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pMLDZ01000009_00019 - 91 0.029 15.1 0.5 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pMLDZ01000009_00019 - 91 0.029 15.1 0.5 2 2 0.014 63 4.4 0.0 29 51 69 91 64 91 0.83 Rv0623-like transcription factor FliG_N PF14842.6 104 pMLDZ01000009_00019 - 91 0.039 14.5 1.0 1 1 1e-05 0.046 14.3 1.0 21 86 9 80 1 85 0.89 FliG N-terminal domain SSB PF00436.25 104 pMLDZ01000009_00020 - 140 1.4e-25 89.3 0.1 1 1 1e-29 1.8e-25 89.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family DUF3895 PF13034.6 76 pMLDZ01000009_00021 - 188 0.047 13.7 0.5 1 2 0.088 1.6e+03 -0.8 0.0 36 62 29 58 5 69 0.54 Protein of unknown function (DUF3895) DUF3895 PF13034.6 76 pMLDZ01000009_00021 - 188 0.047 13.7 0.5 2 2 1.1e-05 0.19 11.7 0.3 9 45 69 105 61 107 0.93 Protein of unknown function (DUF3895) Phage_pRha PF09669.10 88 pMLDZ01000009_00022 - 185 6.9e-29 100.3 0.0 1 1 3e-32 1.1e-28 99.7 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pMLDZ01000009_00022 - 185 0.0016 18.5 0.0 1 1 9.1e-07 0.0033 17.5 0.0 23 90 27 94 23 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pMLDZ01000009_00022 - 185 0.031 13.9 0.1 1 2 0.063 2.3e+02 1.3 0.0 80 118 33 71 5 80 0.78 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pMLDZ01000009_00022 - 185 0.031 13.9 0.1 2 2 8.4e-05 0.3 10.7 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pMLDZ01000009_00022 - 185 0.09 12.8 0.0 1 1 5.5e-05 0.2 11.7 0.0 77 131 80 130 62 134 0.85 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pMLDZ01000009_00022 - 185 0.56 10.3 5.4 1 3 0.048 1.7e+02 2.3 0.0 42 53 14 25 3 28 0.78 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pMLDZ01000009_00022 - 185 0.56 10.3 5.4 2 3 0.0021 7.7 6.6 0.8 5 27 30 51 26 62 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pMLDZ01000009_00022 - 185 0.56 10.3 5.4 3 3 0.067 2.4e+02 1.8 0.0 10 42 116 154 109 160 0.67 Sporulation protein Cse60 CagE_TrbE_VirB PF03135.14 206 pMLDZ01000009_00023 - 922 3.6e-49 167.7 0.3 1 1 2e-52 9e-49 166.4 0.3 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pMLDZ01000009_00023 - 922 7e-21 74.3 1.2 1 1 2.8e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein AAA_10 PF12846.7 362 pMLDZ01000009_00023 - 922 3.8e-07 29.4 0.8 1 1 2.1e-10 9.3e-07 28.1 0.8 23 318 547 843 535 857 0.73 AAA-like domain DUF87 PF01935.17 227 pMLDZ01000009_00023 - 922 0.024 14.7 4.5 1 5 0.52 2.3e+03 -1.6 0.1 117 202 161 253 129 284 0.48 Helicase HerA, central domain DUF87 PF01935.17 227 pMLDZ01000009_00023 - 922 0.024 14.7 4.5 2 5 0.89 4e+03 -2.3 0.0 87 124 263 298 243 301 0.77 Helicase HerA, central domain DUF87 PF01935.17 227 pMLDZ01000009_00023 - 922 0.024 14.7 4.5 3 5 0.00039 1.8 8.6 0.0 26 49 548 571 539 584 0.84 Helicase HerA, central domain DUF87 PF01935.17 227 pMLDZ01000009_00023 - 922 0.024 14.7 4.5 4 5 0.0077 34 4.4 0.2 100 163 638 700 630 732 0.76 Helicase HerA, central domain DUF87 PF01935.17 227 pMLDZ01000009_00023 - 922 0.024 14.7 4.5 5 5 0.31 1.4e+03 -0.9 0.1 43 108 751 811 747 915 0.59 Helicase HerA, central domain TrbC PF04956.13 99 pMLDZ01000009_00024 - 87 1.2e-15 57.5 7.6 1 1 1.5e-19 1.4e-15 57.3 7.6 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pMLDZ01000009_00024 - 87 0.047 13.5 4.0 1 1 6.1e-06 0.054 13.3 3.6 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CRISPR_Cas2 PF09827.9 76 pMLDZ01000009_00026 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pMLDZ01000009_00026 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pMLDZ01000009_00026 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase Resolvase PF00239.21 146 pMLDZ01000009_00027 - 204 3.6e-33 114.7 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pMLDZ01000009_00027 - 204 0.027 14.2 1.2 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pMLDZ01000009_00027 - 204 0.027 14.2 1.2 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pMLDZ01000009_00027 - 204 0.027 14.2 1.2 3 3 0.0087 39 4.1 0.0 11 26 162 177 158 184 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pMLDZ01000009_00027 - 204 0.047 13.7 5.4 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pMLDZ01000009_00027 - 204 0.047 13.7 5.4 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pMLDZ01000009_00027 - 204 0.047 13.7 5.4 3 3 0.0092 41 4.3 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pMLDZ01000009_00027 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pMLDZ01000009_00027 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pMLDZ01000009_00027 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat AAA_25 PF13481.6 194 pMLDZ01000009_00028 - 597 5.3e-15 55.5 0.0 1 1 5e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pMLDZ01000009_00028 - 597 0.00032 20.1 0.0 1 2 8.7e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pMLDZ01000009_00028 - 597 0.00032 20.1 0.0 2 2 0.012 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pMLDZ01000009_00028 - 597 0.0021 17.8 0.0 1 2 6.6e-06 0.015 15.1 0.0 46 87 32 73 22 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pMLDZ01000009_00028 - 597 0.0021 17.8 0.0 2 2 0.62 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pMLDZ01000009_00028 - 597 0.0072 15.7 0.0 1 2 2.6e-05 0.058 12.7 0.0 16 70 30 83 23 120 0.90 KaiC ATPase PF06745.13 231 pMLDZ01000009_00028 - 597 0.0072 15.7 0.0 2 2 0.49 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC AAA PF00004.29 132 pMLDZ01000009_00028 - 597 0.013 15.9 0.2 1 2 0.00015 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pMLDZ01000009_00028 - 597 0.013 15.9 0.2 2 2 0.19 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pMLDZ01000009_00028 - 597 0.2 11.7 2.0 1 1 0.00043 0.95 9.5 2.0 1 29 35 63 35 529 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pMLDZ01000009_00028 - 597 0.35 10.8 3.5 1 3 0.0023 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pMLDZ01000009_00028 - 597 0.35 10.8 3.5 2 3 0.2 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pMLDZ01000009_00028 - 597 0.35 10.8 3.5 3 3 0.38 8.5e+02 -0.0 0.1 9 23 521 535 516 541 0.75 Apolipoprotein C-I (ApoC-1) VASP_tetra PF08776.11 37 pMLDZ01000009_00028 - 597 3.8 7.2 6.1 1 2 0.006 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pMLDZ01000009_00028 - 597 3.8 7.2 6.1 2 2 0.038 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain HicA_toxin PF07927.12 58 pMLDZ01000009_00029 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 123 pMLDZ01000009_00030 - 72 4.2e-08 33.3 0.0 1 1 2.4e-12 4.4e-08 33.3 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system Sdh_cyt PF01127.22 121 pMLDZ01000009_00032 - 85 0.0043 17.1 1.7 1 1 6e-07 0.0054 16.8 1.7 34 88 20 76 18 80 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2633 PF11119.8 57 pMLDZ01000009_00032 - 85 0.93 9.4 4.2 1 1 0.00019 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) DUF4223 PF13978.6 54 pMLDZ01000009_00033 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pMLDZ01000009_00033 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pMLDZ01000009_00033 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain Toprim_3 PF13362.6 95 pMLDZ01000009_00034 - 409 1.6e-08 34.8 0.2 1 2 0.7 6.3e+03 -2.4 0.0 56 74 165 183 154 189 0.74 Toprim domain Toprim_3 PF13362.6 95 pMLDZ01000009_00034 - 409 1.6e-08 34.8 0.2 2 2 4.8e-12 4.3e-08 33.4 0.0 3 94 271 376 269 377 0.86 Toprim domain Retrotrans_gag PF03732.17 96 pMLDZ01000009_00034 - 409 0.017 15.4 0.1 1 2 0.012 1.1e+02 3.2 0.2 41 60 149 169 121 180 0.82 Retrotransposon gag protein Retrotrans_gag PF03732.17 96 pMLDZ01000009_00034 - 409 0.017 15.4 0.1 2 2 0.00015 1.3 9.3 0.0 15 83 283 359 277 369 0.80 Retrotransposon gag protein Sds3 PF08598.11 218 pMLDZ01000009_00036 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pMLDZ01000009_00036 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pMLDZ01000009_00036 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pMLDZ01000009_00036 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pMLDZ01000009_00036 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide HTH_46 PF15977.5 68 pMLDZ01000009_00037 - 183 0.00012 22.0 7.0 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pMLDZ01000009_00037 - 183 0.00012 22.0 7.0 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pMLDZ01000009_00037 - 183 0.00012 22.0 7.0 3 3 1.2e-05 0.043 13.8 1.2 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pMLDZ01000009_00037 - 183 0.063 13.4 2.6 1 1 2e-05 0.071 13.2 1.5 57 131 21 103 9 126 0.66 Stage III sporulation protein AB (spore_III_AB) NLRC4_HD PF17889.1 107 pMLDZ01000009_00037 - 183 0.47 10.8 6.1 1 2 0.00044 1.6 9.1 2.2 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pMLDZ01000009_00037 - 183 0.47 10.8 6.1 2 2 0.021 76 3.7 0.2 45 88 102 143 92 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 pMLDZ01000009_00037 - 183 0.53 10.4 9.0 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pMLDZ01000009_00037 - 183 0.53 10.4 9.0 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pMLDZ01000009_00037 - 183 0.53 10.4 9.0 3 3 0.00042 1.5 8.9 0.4 8 32 103 127 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pMLDZ01000009_00037 - 183 0.57 10.5 7.1 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pMLDZ01000009_00037 - 183 0.57 10.5 7.1 2 2 0.00017 0.61 10.4 1.8 1 50 71 120 71 161 0.80 DNA sulphur modification protein DndE Relaxase PF03432.14 242 pMLDZ01000009_00038 - 462 7.8e-10 38.8 7.7 1 2 8.7e-14 7.8e-10 38.8 7.7 48 227 119 295 70 311 0.65 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pMLDZ01000009_00038 - 462 7.8e-10 38.8 7.7 2 2 0.037 3.3e+02 0.7 5.7 137 183 348 394 316 426 0.72 Relaxase/Mobilisation nuclease domain YqaJ PF09588.10 148 pMLDZ01000009_00038 - 462 0.03 14.5 3.9 1 3 2.7e-05 0.24 11.6 0.4 92 136 210 255 33 259 0.79 YqaJ-like viral recombinase domain YqaJ PF09588.10 148 pMLDZ01000009_00038 - 462 0.03 14.5 3.9 2 3 0.011 96 3.1 0.0 29 63 265 300 257 306 0.71 YqaJ-like viral recombinase domain YqaJ PF09588.10 148 pMLDZ01000009_00038 - 462 0.03 14.5 3.9 3 3 0.81 7.3e+03 -3.0 0.0 54 138 373 388 346 402 0.56 YqaJ-like viral recombinase domain HTH_19 PF12844.7 65 pMLDZ01000009_00039 - 314 6.3e-06 26.1 0.3 1 3 0.0016 2.1 8.5 0.0 11 32 9 30 2 46 0.89 Helix-turn-helix domain HTH_19 PF12844.7 65 pMLDZ01000009_00039 - 314 6.3e-06 26.1 0.3 2 3 6.9 8.9e+03 -3.2 0.0 43 52 90 99 77 105 0.56 Helix-turn-helix domain HTH_19 PF12844.7 65 pMLDZ01000009_00039 - 314 6.3e-06 26.1 0.3 3 3 1.9e-05 0.024 14.6 0.0 27 64 116 152 107 153 0.92 Helix-turn-helix domain HTH_3 PF01381.22 55 pMLDZ01000009_00039 - 314 7.6e-06 25.9 0.0 1 2 4.9e-08 6.2e-05 23.0 0.0 2 29 3 30 2 30 0.93 Helix-turn-helix HTH_3 PF01381.22 55 pMLDZ01000009_00039 - 314 7.6e-06 25.9 0.0 2 2 0.73 9.4e+02 -0.0 0.0 26 55 118 147 110 147 0.85 Helix-turn-helix Phage_CI_repr PF07022.13 65 pMLDZ01000009_00039 - 314 0.00035 20.6 0.0 1 2 4.5e-05 0.057 13.5 0.0 11 49 10 47 2 50 0.77 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 pMLDZ01000009_00039 - 314 0.00035 20.6 0.0 2 2 0.028 36 4.5 0.0 42 64 132 154 125 155 0.79 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 48 pMLDZ01000009_00039 - 314 0.0024 17.4 0.1 1 2 1.1e-05 0.015 14.9 0.1 17 35 10 28 9 29 0.93 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 48 pMLDZ01000009_00039 - 314 0.0024 17.4 0.1 2 2 0.77 9.9e+02 -0.6 0.0 26 38 98 110 95 112 0.85 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 65 pMLDZ01000009_00039 - 314 0.0043 16.9 0.1 1 2 1.4e-05 0.017 14.9 0.0 4 36 5 37 2 49 0.75 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT YdaS_antitoxin PF15943.5 65 pMLDZ01000009_00039 - 314 0.0043 16.9 0.1 2 2 2.5 3.2e+03 -1.9 0.1 38 47 290 299 289 300 0.87 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_17 PF12728.7 51 pMLDZ01000009_00039 - 314 0.028 14.6 0.0 1 2 0.13 1.7e+02 2.5 0.0 5 16 3 14 2 16 0.90 Helix-turn-helix domain HTH_17 PF12728.7 51 pMLDZ01000009_00039 - 314 0.028 14.6 0.0 2 2 0.00031 0.4 10.9 0.0 5 27 14 36 11 42 0.85 Helix-turn-helix domain HTH_28 PF13518.6 52 pMLDZ01000009_00039 - 314 0.033 14.3 0.0 1 1 6.2e-05 0.079 13.1 0.0 12 32 10 30 7 32 0.96 Helix-turn-helix domain HTH_23 PF13384.6 50 pMLDZ01000009_00039 - 314 0.046 13.5 0.0 1 1 8.4e-05 0.11 12.4 0.0 16 37 7 30 1 35 0.85 Homeodomain-like domain HTH_26 PF13443.6 63 pMLDZ01000009_00039 - 314 0.048 14.1 0.1 1 1 8.6e-05 0.11 12.9 0.1 3 30 3 30 1 38 0.88 Cro/C1-type HTH DNA-binding domain HTH_Mga PF08280.11 60 pMLDZ01000009_00039 - 314 0.049 13.7 2.0 1 3 0.0013 1.7 8.7 0.1 21 39 11 29 4 30 0.91 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pMLDZ01000009_00039 - 314 0.049 13.7 2.0 2 3 0.065 83 3.3 0.0 25 59 41 75 32 76 0.80 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pMLDZ01000009_00039 - 314 0.049 13.7 2.0 3 3 9 1.2e+04 -3.5 0.0 46 50 94 98 86 105 0.47 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.6 52 pMLDZ01000009_00039 - 314 0.063 12.7 0.0 1 1 9.3e-05 0.12 11.8 0.0 26 47 10 30 4 33 0.90 Helix-turn-helix domain of transposase family ISL3 HTH_31 PF13560.6 64 pMLDZ01000009_00039 - 314 0.075 13.4 0.0 1 1 0.00011 0.14 12.5 0.0 12 34 8 30 2 41 0.88 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 54 pMLDZ01000009_00039 - 314 0.11 12.2 0.0 1 1 0.00022 0.28 10.9 0.0 25 46 9 30 5 30 0.93 Sigma-70, region 4 Crp PF00325.20 32 pMLDZ01000009_00039 - 314 0.17 11.6 0.1 1 2 0.00033 0.43 10.3 0.0 1 19 9 27 9 28 0.86 Bacterial regulatory proteins, crp family Crp PF00325.20 32 pMLDZ01000009_00039 - 314 0.17 11.6 0.1 2 2 3.2 4.1e+03 -2.5 0.0 18 24 105 111 104 112 0.83 Bacterial regulatory proteins, crp family SNF2_N PF00176.23 350 pMLDZ01000009_00040 - 1137 2.3e-16 59.4 3.1 1 3 8e-20 2.9e-16 59.2 0.3 56 245 222 478 140 493 0.72 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pMLDZ01000009_00040 - 1137 2.3e-16 59.4 3.1 2 3 0.37 1.3e+03 -2.2 0.0 245 283 674 717 667 738 0.71 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pMLDZ01000009_00040 - 1137 2.3e-16 59.4 3.1 3 3 0.4 1.4e+03 -2.3 0.0 170 198 1082 1111 1053 1130 0.70 SNF2 family N-terminal domain ResIII PF04851.15 171 pMLDZ01000009_00040 - 1137 3.2e-08 33.8 8.8 1 3 9e-12 3.2e-08 33.8 8.8 2 148 205 417 204 448 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pMLDZ01000009_00040 - 1137 3.2e-08 33.8 8.8 2 3 0.99 3.6e+03 -2.2 0.2 92 135 930 931 868 990 0.52 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pMLDZ01000009_00040 - 1137 3.2e-08 33.8 8.8 3 3 0.97 3.5e+03 -2.2 7.1 56 151 1032 1109 930 1132 0.60 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pMLDZ01000009_00040 - 1137 6.8e-07 29.6 1.6 1 3 0.082 2.9e+02 1.8 0.0 45 73 282 310 231 315 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pMLDZ01000009_00040 - 1137 6.8e-07 29.6 1.6 2 3 6.8e-09 2.4e-05 24.6 0.0 40 111 716 789 670 789 0.79 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pMLDZ01000009_00040 - 1137 6.8e-07 29.6 1.6 3 3 3.3 1.2e+04 -3.3 0.1 33 66 1059 1092 1040 1096 0.56 Helicase conserved C-terminal domain DEAD PF00270.29 176 pMLDZ01000009_00040 - 1137 9.8e-07 28.7 1.9 1 2 1.5e-07 0.00054 19.8 0.4 2 108 209 314 208 413 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 pMLDZ01000009_00040 - 1137 9.8e-07 28.7 1.9 2 2 0.036 1.3e+02 2.2 0.1 119 153 1088 1124 1025 1135 0.69 DEAD/DEAH box helicase BST2 PF16716.5 91 pMLDZ01000009_00040 - 1137 4.3 8.0 7.3 1 2 0.0023 8.1 7.1 2.7 48 87 333 372 322 376 0.89 Bone marrow stromal antigen 2 BST2 PF16716.5 91 pMLDZ01000009_00040 - 1137 4.3 8.0 7.3 2 2 0.27 9.8e+02 0.4 0.1 61 80 1051 1070 1037 1080 0.77 Bone marrow stromal antigen 2 Eco57I PF07669.11 106 pMLDZ01000009_00041 - 674 1.2e-05 25.7 0.3 1 1 5.6e-09 5e-05 23.8 0.3 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase MTS PF05175.14 169 pMLDZ01000009_00041 - 674 0.004 16.7 0.0 1 1 1.1e-06 0.0098 15.5 0.0 31 140 308 421 298 441 0.72 Methyltransferase small domain RHH_7 PF16777.5 74 pMLDZ01000009_00042 - 88 8.5e-07 29.3 0.8 1 1 5.2e-11 9.4e-07 29.1 0.8 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG AAA_31 PF13614.6 177 pMLDZ01000009_00043 - 186 7.8e-05 22.7 0.5 1 2 2.4e-07 0.0011 19.0 0.1 3 26 2 25 1 31 0.91 AAA domain AAA_31 PF13614.6 177 pMLDZ01000009_00043 - 186 7.8e-05 22.7 0.5 2 2 0.04 1.8e+02 1.9 0.0 117 156 53 92 26 106 0.69 AAA domain CbiA PF01656.23 128 pMLDZ01000009_00043 - 186 0.00097 19.2 0.8 1 1 1.7e-06 0.0077 16.3 0.8 1 55 3 89 3 185 0.65 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pMLDZ01000009_00043 - 186 0.014 14.8 0.0 1 1 4.3e-06 0.019 14.4 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase ParA PF10609.9 246 pMLDZ01000009_00043 - 186 0.17 11.3 0.0 1 1 5.8e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase Papo_T_antigen PF02380.15 93 pMLDZ01000009_00044 - 88 0.02 15.0 7.2 1 1 8.3e-06 0.03 14.5 7.2 51 74 44 66 25 83 0.85 T-antigen specific domain DUF1272 PF06906.11 57 pMLDZ01000009_00044 - 88 0.059 13.5 6.2 1 1 2.6e-05 0.095 12.8 6.2 8 39 29 58 25 65 0.88 Protein of unknown function (DUF1272) CEBP_ZZ PF16366.5 61 pMLDZ01000009_00044 - 88 0.14 12.4 6.2 1 1 5.4e-05 0.19 12.0 6.2 13 53 28 66 25 74 0.78 Cytoplasmic polyadenylation element-binding protein ZZ domain LIM PF00412.22 58 pMLDZ01000009_00044 - 88 0.23 11.7 8.9 1 1 0.00011 0.4 10.9 8.9 26 57 26 58 25 59 0.86 LIM domain DUF5595 PF18077.1 73 pMLDZ01000009_00044 - 88 0.9 9.7 5.1 1 2 1.4 5.1e+03 -2.4 0.1 46 59 5 18 3 22 0.62 Domain of unknown function (DUF5595) DUF5595 PF18077.1 73 pMLDZ01000009_00044 - 88 0.9 9.7 5.1 2 2 5.2e-05 0.19 11.9 1.3 4 29 38 63 37 87 0.77 Domain of unknown function (DUF5595) LysE PF01810.18 193 pMLDZ01000009_00045 - 81 5.1e-06 26.1 0.0 1 1 1.9e-09 5.8e-06 25.9 0.0 37 94 6 65 3 78 0.88 LysE type translocator DUF1516 PF07457.11 108 pMLDZ01000009_00045 - 81 0.00027 21.1 1.1 1 1 1e-07 0.00031 20.9 1.1 37 84 5 50 1 64 0.81 Protein of unknown function (DUF1516) Ac76 PF05814.11 83 pMLDZ01000009_00045 - 81 0.0043 17.0 2.2 1 1 1.7e-06 0.0049 16.8 2.2 3 70 7 70 1 78 0.88 Orf76 (Ac76) Saf_2TM PF18303.1 152 pMLDZ01000009_00045 - 81 0.24 11.0 3.5 1 2 0.084 2.5e+02 1.2 0.4 72 90 5 23 2 27 0.48 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pMLDZ01000009_00045 - 81 0.24 11.0 3.5 2 2 3.9e-05 0.12 12.0 0.7 60 99 21 59 15 65 0.78 SAVED-fused 2TM effector domain DUF2873 PF11395.8 43 pMLDZ01000009_00045 - 81 3.7 7.5 6.8 1 2 0.00026 0.78 9.6 0.6 1 20 1 20 1 25 0.92 Protein of unknown function (DUF2873) DUF2873 PF11395.8 43 pMLDZ01000009_00045 - 81 3.7 7.5 6.8 2 2 0.1 3e+02 1.4 1.1 9 24 26 41 21 48 0.74 Protein of unknown function (DUF2873) LPAM_1 PF08139.12 18 pMLDZ01000009_00045 - 81 7.1 7.3 5.9 1 2 0.00035 1.1 9.9 0.6 1 16 1 16 1 16 0.97 Prokaryotic membrane lipoprotein lipid attachment site LPAM_1 PF08139.12 18 pMLDZ01000009_00045 - 81 7.1 7.3 5.9 2 2 0.99 3e+03 -0.9 0.5 6 12 33 39 30 40 0.60 Prokaryotic membrane lipoprotein lipid attachment site Flp1_like PF16982.5 49 pMLDZ01000009_00046 - 132 0.044 13.2 3.1 1 3 4.9e-06 0.044 13.2 3.1 17 43 17 43 16 45 0.89 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pMLDZ01000009_00046 - 132 0.044 13.2 3.1 2 3 1.2 1e+04 -4.0 0.3 16 22 67 73 66 76 0.49 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pMLDZ01000009_00046 - 132 0.044 13.2 3.1 3 3 1.2 1.1e+04 -4.1 1.5 18 29 92 103 89 107 0.58 Putative Flagellin, Flp1-like, domain BRI3BP PF14965.6 180 pMLDZ01000009_00046 - 132 0.053 13.0 1.6 1 1 6.6e-06 0.06 12.9 1.6 59 106 51 101 9 120 0.82 Negative regulator of p53/TP53 GTP_EFTU PF00009.27 194 pMUJW01000047_00001 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pMUJW01000047_00001 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pMUJW01000047_00001 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pMUJW01000047_00001 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pMUJW01000047_00001 - 639 2.2e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pMUJW01000047_00001 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pMUJW01000047_00001 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pMUJW01000047_00001 - 639 0.0095 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pMUJW01000047_00001 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pMUJW01000047_00001 - 639 0.049 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family APH PF01636.23 240 pMUJW01000047_00002 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pMUJW01000047_00002 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pMUJW01000047_00002 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pMUJW01000047_00002 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family W2 PF02020.18 79 pMUJW01000047_00003 - 266 0.02 15.0 0.1 1 2 0.23 4.1e+03 -2.0 0.0 43 65 155 177 150 179 0.61 eIF4-gamma/eIF5/eIF2-epsilon W2 PF02020.18 79 pMUJW01000047_00003 - 266 0.02 15.0 0.1 2 2 3.4e-06 0.061 13.5 0.0 38 77 180 240 176 242 0.86 eIF4-gamma/eIF5/eIF2-epsilon Lip_prot_lig_C PF10437.9 85 pMUJW01000047_00004 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pMUJW01000047_00004 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pMUJW01000047_00004 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pMUJW01000047_00004 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain LysE PF01810.18 193 pMUJW01000047_00005 - 176 0.0037 16.8 0.7 1 1 3.5e-06 0.007 15.8 0.7 36 97 11 82 8 144 0.76 LysE type translocator DUF1516 PF07457.11 108 pMUJW01000047_00005 - 176 0.0061 16.8 2.4 1 1 6.8e-06 0.013 15.6 2.1 36 103 10 77 3 92 0.76 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pMUJW01000047_00005 - 176 0.01 15.8 2.3 1 1 5.6e-06 0.011 15.7 1.4 17 109 18 114 5 122 0.84 Pallilysin beta barrel domain DUF373 PF04123.13 335 pMUJW01000047_00005 - 176 0.024 14.1 2.4 1 1 1.5e-05 0.031 13.7 2.4 154 237 8 94 4 122 0.79 Domain of unknown function (DUF373) DUF2178 PF09946.9 106 pMUJW01000047_00005 - 176 0.039 14.1 2.1 1 1 3e-05 0.059 13.5 2.1 4 94 12 104 8 110 0.85 Predicted membrane protein (DUF2178) DUF5360 PF17314.2 127 pMUJW01000047_00005 - 176 0.2 11.7 3.7 1 2 0.00017 0.34 11.0 0.4 68 125 5 61 2 64 0.91 Family of unknown function (DUF5360) DUF5360 PF17314.2 127 pMUJW01000047_00005 - 176 0.2 11.7 3.7 2 2 0.12 2.4e+02 1.8 0.2 80 104 81 105 62 113 0.69 Family of unknown function (DUF5360) DHHC PF01529.20 134 pMUJW01000047_00005 - 176 1.2 9.3 8.8 1 2 0.66 1.3e+03 -0.6 0.2 95 112 10 27 2 32 0.57 DHHC palmitoyltransferase DHHC PF01529.20 134 pMUJW01000047_00005 - 176 1.2 9.3 8.8 2 2 8.2e-05 0.16 12.0 3.7 57 119 37 98 33 103 0.69 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pMUJW01000047_00005 - 176 1.4 8.5 6.0 1 2 0.00087 1.7 8.2 0.3 61 96 28 62 21 67 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pMUJW01000047_00005 - 176 1.4 8.5 6.0 2 2 0.025 50 3.4 0.6 24 62 69 107 62 112 0.84 SAVED-fused 2TM effector domain Peptidase_A22B PF04258.13 284 pMUJW01000047_00005 - 176 2.4 7.6 9.0 1 1 0.021 42 3.5 8.9 11 98 6 91 2 123 0.63 Signal peptide peptidase DUF4044 PF13253.6 33 pMUJW01000047_00006 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pMUJW01000047_00006 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pMUJW01000047_00006 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pMUJW01000047_00006 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pMUJW01000047_00006 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pMUJW01000047_00006 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pMUJW01000047_00007 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pMUJW01000047_00007 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pMUJW01000047_00008 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pMUJW01000047_00008 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pMUJW01000047_00008 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pMUJW01000047_00008 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pMUJW01000047_00008 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pMUJW01000047_00008 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pMUJW01000047_00009 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pMUJW01000047_00010 - 1931 3.1e-16 59.1 2.7 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1016 1272 934 1313 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pMUJW01000047_00010 - 1931 3.1e-16 59.1 2.7 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pMUJW01000047_00010 - 1931 3.1e-16 59.1 2.7 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1875 1923 1845 1924 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pMUJW01000047_00010 - 1931 4.9e-08 33.2 8.3 1 2 1.4e-11 4.9e-08 33.2 8.3 2 148 999 1211 998 1242 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pMUJW01000047_00010 - 1931 4.9e-08 33.2 8.3 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1798 1909 1724 1931 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pMUJW01000047_00010 - 1931 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1076 1104 1028 1108 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pMUJW01000047_00010 - 1931 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pMUJW01000047_00010 - 1931 8.9e-06 25.6 1.8 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1003 1108 1002 1204 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pMUJW01000047_00010 - 1931 8.9e-06 25.6 1.8 2 2 0.12 4.2e+02 0.6 0.0 119 150 1882 1915 1827 1930 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 pMUJW01000047_00010 - 1931 3.7e-05 24.2 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 371 471 369 474 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pMUJW01000047_00010 - 1931 3.7e-05 24.2 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 pMUJW01000047_00011 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 pMUJW01000047_00011 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 pMUJW01000047_00011 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 pMUJW01000047_00011 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) Acetyltransf_7 PF13508.7 76 pMUJW01000047_00012 - 234 0.0002 21.7 0.0 1 1 6.3e-08 0.00038 20.8 0.0 29 75 79 143 36 144 0.68 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pMUJW01000047_00012 - 234 0.0029 17.8 0.0 1 1 1.2e-06 0.0072 16.5 0.0 64 92 81 109 56 142 0.78 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 pMUJW01000047_00012 - 234 0.0083 16.2 0.3 1 1 2.6e-06 0.015 15.3 0.3 24 67 171 214 154 218 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Relaxase PF03432.14 242 pMUJW01000047_00013 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pMUJW01000047_00013 - 462 4.7e-10 39.5 7.4 2 2 0.0071 1.3e+02 2.0 5.4 119 183 326 395 318 430 0.69 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pMUJW01000047_00014 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pMUJW01000047_00014 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pMUJW01000047_00014 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pMUJW01000047_00014 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pMUJW01000047_00014 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pMUJW01000047_00014 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pMUJW01000047_00014 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pMUJW01000047_00014 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pMUJW01000047_00014 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pMUJW01000047_00014 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pMUJW01000047_00014 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 pMUJW01000047_00015 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 pMUJW01000047_00015 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 pMUJW01000047_00015 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 pMUJW01000047_00015 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 pMUJW01000047_00015 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 pMUJW01000047_00017 - 217 0.19 11.7 5.6 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pMUJW01000047_00017 - 217 0.19 11.7 5.6 2 2 2.2e-05 0.39 10.7 1.6 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pMUJW01000047_00018 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pMUJW01000047_00018 - 408 0.074 13.0 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pMUJW01000047_00018 - 408 0.13 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pMUJW01000047_00018 - 408 0.27 11.9 5.3 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pMUJW01000047_00018 - 408 0.27 11.9 5.3 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pMUJW01000047_00019 - 87 0.0073 16.2 0.2 1 2 1.3e-06 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pMUJW01000047_00019 - 87 0.0073 16.2 0.2 2 2 1.5 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) STI1 PF17830.1 55 pMUJW01000047_00019 - 87 0.13 12.2 0.0 1 1 3.5e-05 0.32 11.0 0.0 9 39 22 56 16 59 0.84 STI1 domain UBA_6 PF18039.1 42 pMUJW01000047_00020 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 pMUJW01000047_00020 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pMUJW01000047_00020 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 pMUJW01000047_00020 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 pMUJW01000047_00021 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pMUJW01000047_00021 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 pMUJW01000047_00021 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pMUJW01000047_00023 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system AAA_25 PF13481.6 194 pMUJW01000047_00024 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pMUJW01000047_00024 - 597 0.00073 19.0 0.0 1 2 1.6e-06 0.0042 16.5 0.0 16 117 30 136 23 157 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pMUJW01000047_00024 - 597 0.00073 19.0 0.0 2 2 0.014 37 3.5 0.0 123 183 114 176 98 179 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pMUJW01000047_00024 - 597 0.0032 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pMUJW01000047_00024 - 597 0.0032 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pMUJW01000047_00024 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pMUJW01000047_00024 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pMUJW01000047_00024 - 597 0.028 13.8 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pMUJW01000047_00024 - 597 0.028 13.8 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pMUJW01000047_00024 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pMUJW01000047_00024 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pMUJW01000047_00024 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 pMUJW01000047_00025 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pMUJW01000047_00025 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pMUJW01000047_00025 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pMUJW01000047_00025 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pMUJW01000047_00025 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pMUJW01000047_00025 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pMUJW01000047_00025 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pMUJW01000047_00025 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pMUJW01000047_00025 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pMUJW01000047_00025 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pMUJW01000047_00026 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pMUJW01000047_00026 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pMUJW01000047_00026 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pMUJW01000047_00028 - 87 1.4e-15 57.3 6.9 1 1 1.8e-19 1.6e-15 57.1 6.9 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pMUJW01000047_00028 - 87 0.041 13.8 3.5 1 1 5.4e-06 0.049 13.5 3.3 76 135 35 87 22 87 0.69 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pMUJW01000047_00029 - 922 2.6e-50 171.4 0.6 1 1 9.8e-54 5.9e-50 170.2 0.6 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pMUJW01000047_00029 - 922 7.2e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pMUJW01000047_00029 - 922 0.046 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pMUJW01000047_00030 - 185 6.3e-29 100.4 0.0 1 1 2.7e-32 9.7e-29 99.8 0.0 2 88 24 119 23 119 0.90 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.9 93 pMUJW01000047_00030 - 185 0.0015 18.6 0.0 1 1 9.1e-07 0.0033 17.5 0.0 23 90 27 94 23 96 0.93 Uncharacterized protein conserved in archaea (DUF2250) PI3K_P85_iSH2 PF16454.5 161 pMUJW01000047_00030 - 185 0.045 13.3 0.1 1 2 0.066 2.4e+02 1.3 0.0 80 118 33 71 5 80 0.79 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PI3K_P85_iSH2 PF16454.5 161 pMUJW01000047_00030 - 185 0.045 13.3 0.1 2 2 0.00012 0.42 10.2 0.0 45 78 102 135 99 179 0.81 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5512 PF17631.2 139 pMUJW01000047_00030 - 185 0.086 12.9 0.0 1 1 5.8e-05 0.21 11.6 0.0 77 131 80 130 63 134 0.84 Family of unknown function (DUF5512) Spore_Cse60 PF10957.8 60 pMUJW01000047_00030 - 185 0.73 9.9 5.7 1 3 0.054 1.9e+02 2.1 0.0 43 53 15 25 4 29 0.81 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pMUJW01000047_00030 - 185 0.73 9.9 5.7 2 3 0.0022 7.9 6.6 0.8 5 26 30 50 26 61 0.71 Sporulation protein Cse60 Spore_Cse60 PF10957.8 60 pMUJW01000047_00030 - 185 0.73 9.9 5.7 3 3 0.064 2.3e+02 1.9 0.0 10 42 116 154 108 160 0.67 Sporulation protein Cse60 DUF3251 PF11622.8 165 pMUJW01000047_00031 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pMUJW01000047_00031 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pMUJW01000047_00031 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pMUJW01000047_00031 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pMUJW01000047_00031 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pMUJW01000047_00031 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pMUJW01000047_00031 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pMUJW01000047_00031 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pMUJW01000047_00031 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pMUJW01000047_00031 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pMUJW01000047_00031 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pMUJW01000047_00031 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pMUJW01000047_00031 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pMUJW01000047_00031 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pMUJW01000047_00032 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pMUJW01000047_00033 - 91 0.00028 20.6 7.3 1 2 1.1e-07 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pMUJW01000047_00033 - 91 0.00028 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pMUJW01000047_00033 - 91 0.018 15.6 1.1 1 1 4.7e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pMUJW01000047_00033 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pMUJW01000047_00033 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pMUJW01000047_00033 - 91 0.087 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pMUJW01000047_00033 - 91 0.087 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pMUJW01000047_00034 - 323 1.5e-28 100.5 13.6 1 1 8.9e-32 2e-28 100.2 13.6 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pMUJW01000047_00034 - 323 0.0054 16.8 0.6 1 2 1.1 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pMUJW01000047_00034 - 323 0.0054 16.8 0.6 2 2 9.2e-06 0.021 15.0 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pMUJW01000047_00034 - 323 0.011 16.4 5.4 1 2 0.053 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pMUJW01000047_00034 - 323 0.011 16.4 5.4 2 2 5.1e-06 0.011 16.4 5.4 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor KNOX2 PF03791.13 48 pMUJW01000047_00034 - 323 0.066 12.7 0.2 1 2 0.018 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pMUJW01000047_00034 - 323 0.066 12.7 0.2 2 2 0.0032 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain VWA_2 PF13519.6 107 pMUJW01000047_00034 - 323 0.069 13.8 0.9 1 2 2.5 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pMUJW01000047_00034 - 323 0.069 13.8 0.9 2 2 3.1e-05 0.069 13.8 0.9 32 84 209 270 202 296 0.83 von Willebrand factor type A domain THOC7 PF05615.13 132 pMUJW01000047_00034 - 323 2.4 8.4 11.3 1 2 0.0007 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pMUJW01000047_00034 - 323 2.4 8.4 11.3 2 2 0.19 4.3e+02 1.2 5.8 15 71 230 294 215 314 0.59 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pMUJW01000047_00034 - 323 5.4 6.4 7.5 1 2 0.22 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pMUJW01000047_00034 - 323 5.4 6.4 7.5 2 2 0.00077 1.7 8.1 3.5 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein DHR10 PF18595.1 117 pMUJW01000047_00034 - 323 5.9 7.0 14.8 1 2 0.12 2.6e+02 1.7 1.1 78 107 112 141 99 146 0.62 Designed helical repeat protein 10 domain DHR10 PF18595.1 117 pMUJW01000047_00034 - 323 5.9 7.0 14.8 2 2 0.00029 0.66 10.1 6.5 37 105 233 300 223 313 0.83 Designed helical repeat protein 10 domain TrbL PF04610.14 215 pMUJW01000047_00035 - 288 3.6e-30 105.4 29.1 1 2 7.9e-34 3.6e-30 105.4 29.1 6 214 1 208 1 209 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pMUJW01000047_00035 - 288 3.6e-30 105.4 29.1 2 2 0.18 8.2e+02 -0.4 0.1 56 91 240 285 218 288 0.61 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pMUJW01000047_00035 - 288 0.12 12.2 1.4 1 2 0.083 3.7e+02 1.0 0.2 33 66 20 60 16 75 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pMUJW01000047_00035 - 288 0.12 12.2 1.4 2 2 0.00015 0.68 9.8 0.1 28 81 194 244 150 257 0.77 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pMUJW01000047_00035 - 288 1.3 10.0 5.2 1 1 0.0005 2.2 9.3 5.2 8 38 255 285 248 287 0.87 Altered inheritance of mitochondria protein 3 MerC PF03203.14 117 pMUJW01000047_00035 - 288 4.9 7.6 19.7 1 1 0.0056 25 5.4 19.7 4 92 87 189 83 237 0.71 MerC mercury resistance protein Trep_dent_lipo PF09710.10 397 pMUJW01000047_00036 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pMUJW01000047_00036 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pMUJW01000047_00037 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pMUJW01000047_00037 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pMUJW01000047_00038 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pMUJW01000047_00038 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pMUJW01000047_00038 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pMUJW01000047_00039 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pMUJW01000047_00039 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pMUJW01000047_00040 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pMUJW01000047_00040 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pMUJW01000047_00040 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pMUJW01000047_00040 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pMUJW01000047_00040 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pMUJW01000047_00040 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pMUJW01000047_00040 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pMUJW01000047_00040 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pMUJW01000047_00040 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pMUJW01000047_00040 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pMUJW01000047_00040 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pMUJW01000047_00040 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pMUJW01000047_00040 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pMUJW01000047_00040 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pMUJW01000047_00040 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pMUJW01000047_00040 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pMUJW01000047_00040 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pMUJW01000047_00040 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pMUJW01000047_00040 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pMUJW01000047_00040 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pMUJW01000047_00040 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pMUJW01000047_00040 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pMUJW01000047_00040 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pMUJW01000047_00040 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pMUJW01000047_00040 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pMUJW01000047_00040 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pMUJW01000047_00040 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pMUJW01000047_00040 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pMUJW01000047_00040 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pMUJW01000047_00040 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pMUJW01000047_00040 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pMUJW01000047_00040 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pMUJW01000047_00041 - 603 1e-104 351.0 0.1 1 1 4.2e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pMUJW01000047_00041 - 603 9.3e-25 87.0 0.0 1 1 5.8e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pMUJW01000047_00041 - 603 1.9e-14 53.4 0.0 1 2 5.5e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pMUJW01000047_00041 - 603 1.9e-14 53.4 0.0 2 2 3.6e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pMUJW01000047_00041 - 603 0.047 13.8 0.1 1 1 3e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Phage_holin_3_6 PF07332.11 113 pMUJW01000047_00041 - 603 0.22 11.6 0.2 1 1 9.8e-05 0.35 10.9 0.2 33 93 6 87 2 100 0.75 Putative Actinobacterial Holin-X, holin superfamily III Cag12 PF13117.6 97 pMUJW01000047_00042 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pMUJW01000047_00042 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pMUJW01000047_00042 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pMUJW01000047_00042 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pMUJW01000047_00042 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pMUJW01000047_00043 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pMUJW01000047_00044 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pMUJW01000047_00044 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pMUJW01000047_00044 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pMUJW01000047_00044 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pMUJW01000047_00044 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pMUJW01000047_00044 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pMUJW01000047_00046 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pMUJW01000047_00046 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pMUJW01000047_00047 - 730 1.2e-96 324.2 8.2 1 1 1.6e-99 1.7e-96 323.8 8.2 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pMUJW01000047_00047 - 730 1.8e-12 47.4 0.4 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pMUJW01000047_00047 - 730 1.8e-12 47.4 0.4 2 2 4.1 4.3e+03 -2.0 0.1 38 56 537 556 489 568 0.63 Toprim domain zf-C4_Topoisom PF01396.19 39 pMUJW01000047_00047 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pMUJW01000047_00047 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pMUJW01000047_00047 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pMUJW01000047_00047 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pMUJW01000047_00047 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pMUJW01000047_00047 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pMUJW01000047_00047 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pMUJW01000047_00047 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pMUJW01000047_00047 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pMUJW01000047_00047 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pMUJW01000047_00047 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pMUJW01000047_00047 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pMUJW01000047_00047 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pMUJW01000047_00047 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pMUJW01000047_00047 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pMUJW01000047_00047 - 730 0.088 12.7 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pMUJW01000047_00047 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pMUJW01000047_00047 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pMUJW01000047_00047 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pMUJW01000047_00047 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pMUJW01000047_00047 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pMUJW01000047_00047 - 730 0.55 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pMUJW01000047_00047 - 730 0.55 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pMUJW01000047_00047 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pMUJW01000047_00047 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pMUJW01000047_00047 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pMUJW01000047_00047 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pMUJW01000047_00047 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pMUJW01000047_00047 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pMUJW01000047_00047 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pMUJW01000047_00047 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pMUJW01000047_00048 - 473 5.3e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pMUJW01000047_00048 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pMUJW01000047_00050 - 639 1.8e-58 197.3 0.3 1 1 1.2e-61 2.5e-58 196.9 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pMUJW01000047_00050 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pMUJW01000047_00050 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pMUJW01000047_00050 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pMUJW01000047_00050 - 639 2.2e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pMUJW01000047_00050 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pMUJW01000047_00050 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pMUJW01000047_00050 - 639 0.0095 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pMUJW01000047_00050 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pMUJW01000047_00050 - 639 0.049 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family Mur_ligase_M PF08245.12 192 pNAAE01000001_00001 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 pNAAE01000001_00001 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 pNAAE01000001_00001 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain DUF4570 PF15134.6 110 pNAAE01000001_00002 - 423 0.17 11.9 1.7 1 1 1.8e-05 0.32 11.0 1.7 27 98 4 76 1 84 0.78 Domain of unknown function (DUF4570) CTP_transf_3 PF02348.19 221 pNAAE01000001_00003 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 pNAAE01000001_00003 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 pNAAE01000001_00003 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 pNAAE01000001_00003 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 pNAAE01000001_00003 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain PALP PF00291.25 294 pNAAE01000001_00004 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 pNAAE01000001_00004 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 pNAAE01000001_00004 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 pNAAE01000001_00004 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 pNAAE01000001_00004 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 pNAAE01000001_00004 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain LpxK PF02606.14 327 pNAAE01000001_00005 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 pNAAE01000001_00005 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 pNAAE01000001_00005 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pNAAE01000001_00005 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) NAD_synthase PF02540.17 242 pNAAE01000001_00006 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 pNAAE01000001_00006 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 pNAAE01000001_00006 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 pNAAE01000001_00006 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 pNAAE01000001_00006 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 pNAAE01000001_00006 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 pNAAE01000001_00006 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 pNAAE01000001_00006 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 pNAAE01000001_00006 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family Lactamase_B PF00753.27 197 pNAAE01000001_00007 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 pNAAE01000001_00007 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain DUF1129 PF06570.11 206 pNAAE01000001_00008 - 101 0.24 10.9 5.2 1 1 3.7e-05 0.67 9.4 3.4 80 129 1 68 1 74 0.83 Protein of unknown function (DUF1129) adh_short_C2 PF13561.6 234 pNAAE01000001_00009 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 pNAAE01000001_00009 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 pNAAE01000001_00009 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 pNAAE01000001_00009 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 pNAAE01000001_00009 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif DHDPS PF00701.22 289 pNAAE01000001_00010 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 pNAAE01000001_00010 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 pNAAE01000001_00010 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 Peptidase_M16_C PF05193.21 183 pNAAE01000001_00011 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 pNAAE01000001_00011 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 pNAAE01000001_00011 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 pNAAE01000001_00011 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 pNAAE01000001_00011 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 pNAAE01000001_00011 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHO_dh PF01180.21 295 pNAAE01000001_00012 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 pNAAE01000001_00012 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 pNAAE01000001_00012 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 pNAAE01000001_00012 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 pNAAE01000001_00012 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family ABC_membrane PF00664.23 274 pNAAE01000001_00013 - 580 4.4e-48 164.3 8.4 1 1 3.6e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 pNAAE01000001_00013 - 580 4.9e-31 108.1 0.1 1 1 5.5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 pNAAE01000001_00013 - 580 6e-10 38.9 5.9 1 1 8.5e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 pNAAE01000001_00013 - 580 0.00081 19.3 0.2 1 2 4.6 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 pNAAE01000001_00013 - 580 0.00081 19.3 0.2 2 2 1.2e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 pNAAE01000001_00013 - 580 0.0025 18.1 0.4 1 1 1.7e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 pNAAE01000001_00013 - 580 0.0056 16.9 0.2 1 1 2.8e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 pNAAE01000001_00013 - 580 0.0098 15.6 0.1 1 1 2.5e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 pNAAE01000001_00013 - 580 0.024 15.0 0.3 1 3 1 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 pNAAE01000001_00013 - 580 0.024 15.0 0.3 2 3 1.5e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 pNAAE01000001_00013 - 580 0.024 15.0 0.3 3 3 0.91 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 pNAAE01000001_00013 - 580 0.035 14.5 0.0 1 1 5.7e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 pNAAE01000001_00013 - 580 0.094 12.5 0.7 1 2 4.6 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pNAAE01000001_00013 - 580 0.094 12.5 0.7 2 2 0.00012 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 114 pNAAE01000001_00013 - 580 0.11 12.6 0.9 1 1 0.00033 0.53 10.4 0.9 2 42 369 417 368 550 0.69 50S ribosome-binding GTPase tRNA-synt_1e PF01406.19 301 pNAAE01000001_00014 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 pNAAE01000001_00014 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 pNAAE01000001_00014 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 pNAAE01000001_00014 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 pNAAE01000001_00014 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 pNAAE01000001_00014 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 pNAAE01000001_00014 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 pNAAE01000001_00014 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 pNAAE01000001_00014 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 pNAAE01000001_00014 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 pNAAE01000001_00014 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 pNAAE01000001_00014 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) MurJ PF03023.14 452 pNAAE01000001_00015 - 483 1e-91 307.8 60.1 1 1 1.9e-95 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ Bunya_G2 PF03563.13 285 pNAAE01000001_00015 - 483 1.5 8.0 7.4 1 1 0.00035 3.1 7.0 7.4 186 221 443 478 434 483 0.91 Bunyavirus glycoprotein G2 FapA PF03961.13 454 pNAAE01000001_00016 - 619 3.5e-30 105.0 37.0 1 1 1.2e-33 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 pNAAE01000001_00016 - 619 0.027 13.8 8.1 1 1 1.4e-05 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein Viral_P18 PF04521.13 122 pNAAE01000001_00016 - 619 0.15 11.8 2.3 1 3 0.35 1.6e+03 -1.1 0.0 84 105 175 196 144 255 0.79 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 pNAAE01000001_00016 - 619 0.15 11.8 2.3 2 3 0.0048 21 4.9 0.0 83 122 426 465 412 465 0.83 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 pNAAE01000001_00016 - 619 0.15 11.8 2.3 3 3 0.0091 41 4.0 0.4 71 97 502 528 493 542 0.83 ssRNA positive strand viral 18kD cysteine rich protein APG6_N PF17675.1 133 pNAAE01000001_00016 - 619 0.29 11.7 8.6 1 1 0.00031 1.4 9.5 8.6 30 123 436 526 426 546 0.84 Apg6 coiled-coil region HHH_5 PF14520.6 57 pNAAE01000001_00017 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 pNAAE01000001_00017 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 pNAAE01000001_00017 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 pNAAE01000001_00017 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 pNAAE01000001_00017 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 pNAAE01000001_00017 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 pNAAE01000001_00017 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 pNAAE01000001_00017 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 pNAAE01000001_00017 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 pNAAE01000001_00017 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 pNAAE01000001_00017 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 pNAAE01000001_00017 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 pNAAE01000001_00017 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pNAAE01000001_00017 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 pNAAE01000001_00017 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 pNAAE01000001_00017 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 pNAAE01000001_00017 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 pNAAE01000001_00017 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 pNAAE01000001_00017 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 pNAAE01000001_00017 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 pNAAE01000001_00017 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 pNAAE01000001_00017 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda Dala_Dala_lig_C PF07478.13 204 pNAAE01000001_00018 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 pNAAE01000001_00018 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 pNAAE01000001_00018 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 pNAAE01000001_00018 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 pNAAE01000001_00018 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 pNAAE01000001_00018 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 pNAAE01000001_00018 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 pNAAE01000001_00018 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 pNAAE01000001_00018 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain PhdYeFM_antitox PF02604.19 75 pNAAE01000001_00019 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system Mur_ligase_M PF08245.12 192 pNAAG01000003_00002 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 pNAAG01000003_00002 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 pNAAG01000003_00002 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain Abhydrolase_1 PF00561.20 257 pNAAG01000003_00003 - 239 5.1e-09 36.2 0.0 1 2 1.3e-08 3.3e-05 23.7 0.0 3 95 28 112 26 120 0.87 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 257 pNAAG01000003_00003 - 239 5.1e-09 36.2 0.0 2 2 0.00011 0.27 10.8 0.0 207 254 180 226 119 228 0.78 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 220 pNAAG01000003_00003 - 239 6.4e-07 30.2 0.0 1 1 9.3e-10 2.4e-06 28.3 0.0 1 97 28 121 28 234 0.65 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 239 pNAAG01000003_00003 - 239 2.5e-05 23.7 0.0 1 1 1.5e-08 3.9e-05 23.0 0.0 7 116 28 126 25 164 0.74 Serine aminopeptidase, S33 FSH1 PF03959.13 212 pNAAG01000003_00003 - 239 0.0031 17.2 0.1 1 2 0.016 42 3.7 0.0 5 26 26 47 23 61 0.81 Serine hydrolase (FSH1) FSH1 PF03959.13 212 pNAAG01000003_00003 - 239 0.0031 17.2 0.1 2 2 0.0001 0.26 10.9 0.0 151 201 176 223 85 225 0.74 Serine hydrolase (FSH1) Lipase_3 PF01764.25 142 pNAAG01000003_00003 - 239 0.018 14.9 0.0 1 2 2e-05 0.051 13.5 0.0 44 83 57 108 17 113 0.74 Lipase (class 3) Lipase_3 PF01764.25 142 pNAAG01000003_00003 - 239 0.018 14.9 0.0 2 2 1 2.7e+03 -1.9 0.0 46 71 167 192 141 194 0.65 Lipase (class 3) Abhydrolase_4 PF08386.10 103 pNAAG01000003_00003 - 239 0.053 13.6 0.0 1 1 3.2e-05 0.083 13.0 0.0 32 65 182 215 169 238 0.78 TAP-like protein Rota_VP2 PF05087.12 884 pNAAG01000003_00003 - 239 0.056 11.6 0.0 1 1 2.7e-05 0.069 11.3 0.0 724 781 52 109 43 136 0.81 Rotavirus VP2 protein PhdYeFM_antitox PF02604.19 75 pNAAG01000003_00004 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system Dala_Dala_lig_C PF07478.13 204 pNAAG01000003_00005 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 pNAAG01000003_00005 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 pNAAG01000003_00005 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 pNAAG01000003_00005 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 pNAAG01000003_00005 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 pNAAG01000003_00005 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 pNAAG01000003_00005 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 pNAAG01000003_00005 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 pNAAG01000003_00005 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain HHH_5 PF14520.6 57 pNAAG01000003_00006 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 pNAAG01000003_00006 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 pNAAG01000003_00006 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 pNAAG01000003_00006 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 pNAAG01000003_00006 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 pNAAG01000003_00006 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 pNAAG01000003_00006 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 pNAAG01000003_00006 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 pNAAG01000003_00006 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 pNAAG01000003_00006 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 pNAAG01000003_00006 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 pNAAG01000003_00006 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 pNAAG01000003_00006 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pNAAG01000003_00006 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 pNAAG01000003_00006 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 pNAAG01000003_00006 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 pNAAG01000003_00006 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 pNAAG01000003_00006 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 pNAAG01000003_00006 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 pNAAG01000003_00006 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 pNAAG01000003_00006 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 pNAAG01000003_00006 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda FapA PF03961.13 454 pNAAG01000003_00007 - 619 3.5e-30 105.0 37.0 1 1 1.2e-33 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 pNAAG01000003_00007 - 619 0.027 13.8 8.1 1 1 1.4e-05 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein Viral_P18 PF04521.13 122 pNAAG01000003_00007 - 619 0.15 11.8 2.3 1 3 0.35 1.6e+03 -1.1 0.0 84 105 175 196 144 255 0.79 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 pNAAG01000003_00007 - 619 0.15 11.8 2.3 2 3 0.0048 21 4.9 0.0 83 122 426 465 412 465 0.83 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 pNAAG01000003_00007 - 619 0.15 11.8 2.3 3 3 0.0091 41 4.0 0.4 71 97 502 528 493 542 0.83 ssRNA positive strand viral 18kD cysteine rich protein APG6_N PF17675.1 133 pNAAG01000003_00007 - 619 0.29 11.7 8.6 1 1 0.00031 1.4 9.5 8.6 30 123 436 526 426 546 0.84 Apg6 coiled-coil region MurJ PF03023.14 452 pNAAG01000003_00008 - 483 1e-91 307.8 60.1 1 1 1.9e-95 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ Bunya_G2 PF03563.13 285 pNAAG01000003_00008 - 483 1.5 8.0 7.4 1 1 0.00035 3.1 7.0 7.4 186 221 443 478 434 483 0.91 Bunyavirus glycoprotein G2 tRNA-synt_1e PF01406.19 301 pNAAG01000003_00009 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 pNAAG01000003_00009 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 pNAAG01000003_00009 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 pNAAG01000003_00009 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 pNAAG01000003_00009 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 pNAAG01000003_00009 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 pNAAG01000003_00009 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 pNAAG01000003_00009 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 pNAAG01000003_00009 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 pNAAG01000003_00009 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 pNAAG01000003_00009 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 pNAAG01000003_00009 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) ABC_membrane PF00664.23 274 pNAAG01000003_00010 - 580 4.4e-48 164.3 8.4 1 1 3.6e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 pNAAG01000003_00010 - 580 4.9e-31 108.1 0.1 1 1 5.5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 pNAAG01000003_00010 - 580 6e-10 38.9 5.9 1 1 8.5e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 pNAAG01000003_00010 - 580 0.00081 19.3 0.2 1 2 4.6 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 pNAAG01000003_00010 - 580 0.00081 19.3 0.2 2 2 1.2e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 pNAAG01000003_00010 - 580 0.0025 18.1 0.4 1 1 1.7e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 pNAAG01000003_00010 - 580 0.0056 16.9 0.2 1 1 2.8e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 pNAAG01000003_00010 - 580 0.0098 15.6 0.1 1 1 2.5e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 pNAAG01000003_00010 - 580 0.024 15.0 0.3 1 3 1 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 pNAAG01000003_00010 - 580 0.024 15.0 0.3 2 3 1.5e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 pNAAG01000003_00010 - 580 0.024 15.0 0.3 3 3 0.91 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 pNAAG01000003_00010 - 580 0.035 14.5 0.0 1 1 5.7e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 pNAAG01000003_00010 - 580 0.094 12.5 0.7 1 2 4.6 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pNAAG01000003_00010 - 580 0.094 12.5 0.7 2 2 0.00012 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 114 pNAAG01000003_00010 - 580 0.11 12.6 0.9 1 1 0.00033 0.53 10.4 0.9 2 42 369 417 368 550 0.69 50S ribosome-binding GTPase DHO_dh PF01180.21 295 pNAAG01000003_00011 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 pNAAG01000003_00011 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 pNAAG01000003_00011 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 pNAAG01000003_00011 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 pNAAG01000003_00011 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family Peptidase_M16_C PF05193.21 183 pNAAG01000003_00012 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 pNAAG01000003_00012 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 pNAAG01000003_00012 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 pNAAG01000003_00012 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 pNAAG01000003_00012 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 pNAAG01000003_00012 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHDPS PF00701.22 289 pNAAG01000003_00013 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 pNAAG01000003_00013 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 pNAAG01000003_00013 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 adh_short_C2 PF13561.6 234 pNAAG01000003_00014 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 pNAAG01000003_00014 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 pNAAG01000003_00014 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 pNAAG01000003_00014 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 pNAAG01000003_00014 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif DUF1129 PF06570.11 206 pNAAG01000003_00015 - 101 0.24 10.9 5.2 1 1 3.7e-05 0.67 9.4 3.4 80 129 1 68 1 74 0.83 Protein of unknown function (DUF1129) Lactamase_B PF00753.27 197 pNAAG01000003_00016 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 pNAAG01000003_00016 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain NAD_synthase PF02540.17 242 pNAAG01000003_00017 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 pNAAG01000003_00017 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 pNAAG01000003_00017 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 pNAAG01000003_00017 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 pNAAG01000003_00017 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 pNAAG01000003_00017 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 pNAAG01000003_00017 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 pNAAG01000003_00017 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 pNAAG01000003_00017 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family LpxK PF02606.14 327 pNAAG01000003_00018 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 pNAAG01000003_00018 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 pNAAG01000003_00018 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pNAAG01000003_00018 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) PALP PF00291.25 294 pNAAG01000003_00019 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 pNAAG01000003_00019 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 pNAAG01000003_00019 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 pNAAG01000003_00019 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 pNAAG01000003_00019 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 pNAAG01000003_00019 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain CTP_transf_3 PF02348.19 221 pNAAG01000003_00020 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 pNAAG01000003_00020 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 pNAAG01000003_00020 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 pNAAG01000003_00020 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 pNAAG01000003_00020 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain MAF_flag10 PF01973.18 171 pNAAG01000032_00001 - 430 1.3e-43 148.6 1.0 1 1 4.5e-47 2.7e-43 147.6 1.0 11 170 3 167 1 168 0.92 Protein of unknown function DUF115 KASH_CCD PF14662.6 191 pNAAG01000032_00001 - 430 0.0075 16.1 0.5 1 1 6.2e-06 0.037 13.9 0.5 12 81 270 339 267 347 0.91 Coiled-coil region of CCDC155 or KASH Fib_alpha PF08702.10 143 pNAAG01000032_00001 - 430 0.072 13.3 4.3 1 2 0.075 4.5e+02 1.0 0.0 84 132 212 232 174 236 0.66 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pNAAG01000032_00001 - 430 0.072 13.3 4.3 2 2 5.4e-05 0.33 11.2 2.8 26 120 271 364 269 376 0.88 Fibrinogen alpha/beta chain family MAF_flag10 PF01973.18 171 pNAAG01000032_00002 - 626 1.5e-42 145.2 1.3 1 2 0.72 2.6e+03 -2.0 0.2 83 110 122 148 92 186 0.63 Protein of unknown function DUF115 MAF_flag10 PF01973.18 171 pNAAG01000032_00002 - 626 1.5e-42 145.2 1.3 2 2 8e-46 2.9e-42 144.3 0.1 1 170 209 384 209 385 0.91 Protein of unknown function DUF115 PspA_IM30 PF04012.12 221 pNAAG01000032_00002 - 626 0.054 13.1 2.0 1 1 2.3e-05 0.084 12.4 2.0 82 138 486 543 467 551 0.86 PspA/IM30 family FliE PF02049.18 89 pNAAG01000032_00002 - 626 0.086 13.0 0.1 1 1 4.5e-05 0.16 12.1 0.1 24 84 490 550 472 555 0.86 Flagellar hook-basal body complex protein FliE Sec2p PF06428.11 92 pNAAG01000032_00002 - 626 0.26 11.3 7.2 1 1 0.00023 0.83 9.7 7.2 42 87 488 533 484 538 0.89 GDP/GTP exchange factor Sec2p eIF-4B PF06273.11 502 pNAAG01000032_00002 - 626 1.3 8.0 4.0 1 1 0.00053 1.9 7.5 4.0 368 427 479 538 469 548 0.87 Plant specific eukaryotic initiation factor 4B Mur_ligase_M PF08245.12 192 pNAAH01000003_00002 - 475 3.6e-20 72.8 0.8 1 2 2.1e-23 1.9e-19 70.4 0.1 1 191 160 333 160 334 0.88 Mur ligase middle domain Mur_ligase_M PF08245.12 192 pNAAH01000003_00002 - 475 3.6e-20 72.8 0.8 2 2 0.56 5e+03 -2.7 0.1 99 127 431 459 422 472 0.52 Mur ligase middle domain Mur_ligase_C PF02875.21 91 pNAAH01000003_00002 - 475 0.0043 17.3 0.0 1 1 1.2e-06 0.011 16.0 0.0 1 74 354 422 354 433 0.76 Mur ligase family, glutamate ligase domain Abhydrolase_1 PF00561.20 257 pNAAH01000003_00003 - 239 5.1e-09 36.2 0.0 1 2 1.3e-08 3.3e-05 23.7 0.0 3 95 28 112 26 120 0.87 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 257 pNAAH01000003_00003 - 239 5.1e-09 36.2 0.0 2 2 0.00011 0.27 10.8 0.0 207 254 180 226 119 228 0.78 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 220 pNAAH01000003_00003 - 239 6.4e-07 30.2 0.0 1 1 9.3e-10 2.4e-06 28.3 0.0 1 97 28 121 28 234 0.65 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 239 pNAAH01000003_00003 - 239 2.5e-05 23.7 0.0 1 1 1.5e-08 3.9e-05 23.0 0.0 7 116 28 126 25 164 0.74 Serine aminopeptidase, S33 FSH1 PF03959.13 212 pNAAH01000003_00003 - 239 0.0031 17.2 0.1 1 2 0.016 42 3.7 0.0 5 26 26 47 23 61 0.81 Serine hydrolase (FSH1) FSH1 PF03959.13 212 pNAAH01000003_00003 - 239 0.0031 17.2 0.1 2 2 0.0001 0.26 10.9 0.0 151 201 176 223 85 225 0.74 Serine hydrolase (FSH1) Lipase_3 PF01764.25 142 pNAAH01000003_00003 - 239 0.018 14.9 0.0 1 2 2e-05 0.051 13.5 0.0 44 83 57 108 17 113 0.74 Lipase (class 3) Lipase_3 PF01764.25 142 pNAAH01000003_00003 - 239 0.018 14.9 0.0 2 2 1 2.7e+03 -1.9 0.0 46 71 167 192 141 194 0.65 Lipase (class 3) Abhydrolase_4 PF08386.10 103 pNAAH01000003_00003 - 239 0.053 13.6 0.0 1 1 3.2e-05 0.083 13.0 0.0 32 65 182 215 169 238 0.78 TAP-like protein Rota_VP2 PF05087.12 884 pNAAH01000003_00003 - 239 0.056 11.6 0.0 1 1 2.7e-05 0.069 11.3 0.0 724 781 52 109 43 136 0.81 Rotavirus VP2 protein PhdYeFM_antitox PF02604.19 75 pNAAH01000003_00004 - 71 1.2e-08 34.6 0.2 1 1 8e-13 1.4e-08 34.4 0.2 2 59 8 65 7 71 0.80 Antitoxin Phd_YefM, type II toxin-antitoxin system Dala_Dala_lig_C PF07478.13 204 pNAAH01000003_00005 - 346 2.6e-32 112.1 0.1 1 1 1.2e-35 3.6e-32 111.6 0.1 3 184 137 309 135 330 0.88 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 103 pNAAH01000003_00005 - 346 1.3e-20 73.8 0.0 1 2 3.6e-23 1.1e-19 70.8 0.0 1 102 2 117 2 118 0.80 D-ala D-ala ligase N-terminus Dala_Dala_lig_N PF01820.21 103 pNAAH01000003_00005 - 346 1.3e-20 73.8 0.0 2 2 0.26 7.7e+02 0.6 0.0 59 89 316 346 200 346 0.67 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 171 pNAAH01000003_00005 - 346 1.2e-05 25.0 0.0 1 2 3e-06 0.0089 15.6 0.0 2 73 137 206 124 229 0.88 ATP-grasp domain ATP-grasp PF02222.22 171 pNAAH01000003_00005 - 346 1.2e-05 25.0 0.0 2 2 0.0014 4.2 6.9 0.0 111 160 253 301 243 303 0.91 ATP-grasp domain ATP-grasp_4 PF13535.6 160 pNAAH01000003_00005 - 346 0.00023 20.8 0.0 1 1 2.1e-07 0.00062 19.4 0.0 2 31 160 189 159 213 0.88 ATP-grasp domain ATP-grasp_3 PF02655.14 161 pNAAH01000003_00005 - 346 0.0015 18.6 0.1 1 2 0.037 1.1e+02 2.8 0.0 75 103 111 148 109 160 0.76 ATP-grasp domain ATP-grasp_3 PF02655.14 161 pNAAH01000003_00005 - 346 0.0015 18.6 0.1 2 2 3.7e-05 0.11 12.5 0.1 31 157 160 300 137 303 0.73 ATP-grasp domain CPSase_L_D2 PF02786.17 211 pNAAH01000003_00005 - 346 0.069 12.6 0.0 1 1 4.2e-05 0.13 11.8 0.0 27 95 149 211 126 220 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain HHH_5 PF14520.6 57 pNAAH01000003_00006 - 183 2.8e-15 56.6 0.0 1 1 4.5e-18 6.7e-15 55.4 0.0 1 57 72 130 72 130 0.91 Helix-hairpin-helix domain RuvA_N PF01330.21 60 pNAAH01000003_00006 - 183 4.3e-10 39.5 0.1 1 2 2.1e-12 3.1e-09 36.8 0.1 1 60 1 62 1 62 0.92 RuvA N terminal domain RuvA_N PF01330.21 60 pNAAH01000003_00006 - 183 4.3e-10 39.5 0.1 2 2 0.63 9.3e+02 0.0 0.0 17 27 74 84 65 97 0.80 RuvA N terminal domain RuvA_C PF07499.13 47 pNAAH01000003_00006 - 183 2.2e-08 34.4 2.0 1 1 2.8e-11 4.2e-08 33.5 2.0 3 46 142 182 140 183 0.91 RuvA, C-terminal domain HHH PF00633.23 30 pNAAH01000003_00006 - 183 4.7e-07 29.4 0.1 1 2 0.00084 1.2 9.1 0.0 10 29 72 91 65 92 0.89 Helix-hairpin-helix motif HHH PF00633.23 30 pNAAH01000003_00006 - 183 4.7e-07 29.4 0.1 2 2 1.8e-06 0.0027 17.5 0.2 13 28 110 125 107 126 0.94 Helix-hairpin-helix motif Ribosomal_S13 PF00416.22 128 pNAAH01000003_00006 - 183 5.6e-05 23.5 0.1 1 2 2e-05 0.03 14.7 0.0 10 51 68 109 63 113 0.85 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 pNAAH01000003_00006 - 183 5.6e-05 23.5 0.1 2 2 0.0023 3.5 8.0 0.0 17 59 110 151 107 181 0.80 Ribosomal protein S13/S18 HHH_2 PF12826.7 64 pNAAH01000003_00006 - 183 0.00086 19.4 0.0 1 2 0.0012 1.8 8.7 0.0 23 55 61 93 58 102 0.83 Helix-hairpin-helix motif HHH_2 PF12826.7 64 pNAAH01000003_00006 - 183 0.00086 19.4 0.0 2 2 0.0016 2.4 8.3 0.0 29 53 102 126 97 138 0.80 Helix-hairpin-helix motif HHH_3 PF12836.7 65 pNAAH01000003_00006 - 183 0.00095 19.4 0.0 1 2 0.13 1.9e+02 2.4 0.0 44 56 73 85 70 91 0.74 Helix-hairpin-helix motif HHH_3 PF12836.7 65 pNAAH01000003_00006 - 183 0.00095 19.4 0.0 2 2 2.2e-05 0.033 14.5 0.0 13 31 107 125 105 140 0.90 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 97 pNAAH01000003_00006 - 183 0.0011 19.5 0.7 1 2 0.39 5.9e+02 1.2 0.0 22 35 77 90 73 105 0.81 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pNAAH01000003_00006 - 183 0.0011 19.5 0.7 2 2 5.1e-06 0.0077 16.8 0.2 14 73 105 163 94 180 0.78 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 87 pNAAH01000003_00006 - 183 0.0083 16.4 0.0 1 2 0.066 99 3.4 0.0 3 28 74 98 72 104 0.81 Transposase IS116/IS110/IS902 family Transposase_20 PF02371.16 87 pNAAH01000003_00006 - 183 0.0083 16.4 0.0 2 2 0.00029 0.43 10.9 0.0 3 25 109 131 107 152 0.88 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 32 pNAAH01000003_00006 - 183 0.019 15.3 0.1 1 2 1.9 2.9e+03 -1.0 0.0 15 31 77 94 77 95 0.78 IMS family HHH motif IMS_HHH PF11798.8 32 pNAAH01000003_00006 - 183 0.019 15.3 0.1 2 2 0.00013 0.19 12.1 0.1 13 27 110 124 110 128 0.87 IMS family HHH motif HHH_8 PF14716.6 68 pNAAH01000003_00006 - 183 0.022 15.1 0.2 1 2 0.24 3.6e+02 1.6 0.0 44 61 70 87 64 93 0.75 Helix-hairpin-helix domain HHH_8 PF14716.6 68 pNAAH01000003_00006 - 183 0.022 15.1 0.2 2 2 0.0003 0.45 10.9 0.1 47 63 107 124 92 129 0.79 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 50 pNAAH01000003_00006 - 183 0.032 14.1 0.0 1 2 0.01 15 5.5 0.0 2 14 74 86 73 97 0.90 Fingers domain of DNA polymerase lambda DNA_pol_lambd_f PF10391.9 50 pNAAH01000003_00006 - 183 0.032 14.1 0.0 2 2 0.0056 8.3 6.3 0.0 3 17 110 124 108 127 0.87 Fingers domain of DNA polymerase lambda FapA PF03961.13 454 pNAAH01000003_00007 - 619 3.5e-30 105.0 37.0 1 1 1.2e-33 5.2e-30 104.5 36.7 26 432 125 552 86 566 0.85 Flagellar Assembly Protein A FAM76 PF16046.5 300 pNAAH01000003_00007 - 619 0.027 13.8 8.1 1 1 1.4e-05 0.061 12.7 8.1 195 295 417 532 335 537 0.64 FAM76 protein Viral_P18 PF04521.13 122 pNAAH01000003_00007 - 619 0.15 11.8 2.3 1 3 0.35 1.6e+03 -1.1 0.0 84 105 175 196 144 255 0.79 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 pNAAH01000003_00007 - 619 0.15 11.8 2.3 2 3 0.0048 21 4.9 0.0 83 122 426 465 412 465 0.83 ssRNA positive strand viral 18kD cysteine rich protein Viral_P18 PF04521.13 122 pNAAH01000003_00007 - 619 0.15 11.8 2.3 3 3 0.0091 41 4.0 0.4 71 97 502 528 493 542 0.83 ssRNA positive strand viral 18kD cysteine rich protein APG6_N PF17675.1 133 pNAAH01000003_00007 - 619 0.29 11.7 8.6 1 1 0.00031 1.4 9.5 8.6 30 123 436 526 426 546 0.84 Apg6 coiled-coil region MurJ PF03023.14 452 pNAAH01000003_00008 - 483 1e-91 307.8 60.1 1 1 1.9e-95 1.7e-91 307.1 60.1 1 433 30 462 30 479 0.87 Lipid II flippase MurJ Bunya_G2 PF03563.13 285 pNAAH01000003_00008 - 483 1.5 8.0 7.4 1 1 0.00035 3.1 7.0 7.4 186 221 443 478 434 483 0.91 Bunyavirus glycoprotein G2 tRNA-synt_1e PF01406.19 301 pNAAH01000003_00009 - 462 1e-109 366.5 0.6 1 1 6.7e-113 1.7e-109 365.8 0.6 5 300 14 303 10 304 0.96 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 391 pNAAH01000003_00009 - 462 9e-14 51.0 1.5 1 3 7.5e-08 0.00019 20.3 0.0 12 130 30 148 22 175 0.88 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 pNAAH01000003_00009 - 462 9e-14 51.0 1.5 2 3 1.3e-10 3.4e-07 29.3 0.0 316 371 245 299 220 307 0.81 tRNA synthetases class I (M) tRNA-synt_1g PF09334.11 391 pNAAH01000003_00009 - 462 9e-14 51.0 1.5 3 3 1.3 3.4e+03 -3.5 0.1 193 225 355 388 348 390 0.69 tRNA synthetases class I (M) DALR_2 PF09190.11 63 pNAAH01000003_00009 - 462 1.1e-07 32.2 4.6 1 2 2.8e-09 7.2e-06 26.4 1.4 4 55 342 396 339 403 0.80 DALR domain DALR_2 PF09190.11 63 pNAAH01000003_00009 - 462 1.1e-07 32.2 4.6 2 2 0.007 18 5.9 0.1 7 16 428 437 424 439 0.87 DALR domain tRNA-synt_1 PF00133.22 602 pNAAH01000003_00009 - 462 1.6e-06 26.7 0.0 1 2 0.0018 4.5 5.4 0.0 19 66 13 60 6 142 0.88 tRNA synthetases class I (I, L, M and V) tRNA-synt_1 PF00133.22 602 pNAAH01000003_00009 - 462 1.6e-06 26.7 0.0 2 2 1.9e-07 0.00047 18.5 0.0 553 600 247 293 238 295 0.86 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 360 pNAAH01000003_00009 - 462 0.0002 20.4 0.2 1 2 0.0063 16 4.3 0.0 10 77 6 74 2 172 0.84 tRNA synthetases class I (K) tRNA-synt_1f PF01921.18 360 pNAAH01000003_00009 - 462 0.0002 20.4 0.2 2 2 7.9e-06 0.02 13.8 0.1 274 337 250 314 245 337 0.82 tRNA synthetases class I (K) Helicase_Sgs1 PF11408.8 80 pNAAH01000003_00009 - 462 0.0023 18.0 0.0 1 1 3e-06 0.0076 16.3 0.0 7 41 41 76 36 83 0.88 Sgs1 RecQ helicase DUF4919 PF16266.5 185 pNAAH01000003_00009 - 462 0.013 15.4 0.0 1 1 1.3e-05 0.033 14.1 0.0 108 185 58 140 45 140 0.85 Domain of unknown function (DUF4919) ABC_membrane PF00664.23 274 pNAAH01000003_00010 - 580 4.4e-48 164.3 8.4 1 1 3.6e-51 5.8e-48 163.9 8.4 3 271 27 293 25 296 0.95 ABC transporter transmembrane region ABC_tran PF00005.27 137 pNAAH01000003_00010 - 580 4.9e-31 108.1 0.1 1 1 5.5e-34 9e-31 107.2 0.1 1 137 356 503 356 503 0.83 ABC transporter SMC_N PF02463.19 220 pNAAH01000003_00010 - 580 6e-10 38.9 5.9 1 1 8.5e-12 1.4e-08 34.5 5.9 23 211 365 545 350 550 0.72 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 167 pNAAH01000003_00010 - 580 0.00081 19.3 0.2 1 2 4.6 7.4e+03 -3.3 0.0 53 99 209 254 208 261 0.67 RsgA GTPase RsgA_GTPase PF03193.16 167 pNAAH01000003_00010 - 580 0.00081 19.3 0.2 2 2 1.2e-06 0.0019 18.1 0.1 96 123 363 390 322 404 0.76 RsgA GTPase AAA_22 PF13401.6 137 pNAAH01000003_00010 - 580 0.0025 18.1 0.4 1 1 1.7e-05 0.027 14.7 0.4 5 128 366 528 364 536 0.58 AAA domain SbcCD_C PF13558.6 90 pNAAH01000003_00010 - 580 0.0056 16.9 0.2 1 1 2.8e-05 0.046 14.0 0.2 20 89 462 518 447 519 0.77 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 192 pNAAH01000003_00010 - 580 0.0098 15.6 0.1 1 1 2.5e-05 0.04 13.6 0.1 19 122 367 528 363 540 0.75 AAA domain ATP-synt_I PF03899.15 100 pNAAH01000003_00010 - 580 0.024 15.0 0.3 1 3 1 1.6e+03 -0.5 0.2 65 83 17 35 12 44 0.86 ATP synthase I chain ATP-synt_I PF03899.15 100 pNAAH01000003_00010 - 580 0.024 15.0 0.3 2 3 1.5e-05 0.024 15.0 0.3 8 70 148 208 145 210 0.91 ATP synthase I chain ATP-synt_I PF03899.15 100 pNAAH01000003_00010 - 580 0.024 15.0 0.3 3 3 0.91 1.5e+03 -0.4 0.8 14 45 261 293 254 312 0.68 ATP synthase I chain AAA_16 PF13191.6 170 pNAAH01000003_00010 - 580 0.035 14.5 0.0 1 1 5.7e-05 0.094 13.1 0.0 25 168 367 526 361 546 0.48 AAA ATPase domain AAA_29 PF13555.6 61 pNAAH01000003_00010 - 580 0.094 12.5 0.7 1 2 4.6 7.4e+03 -3.2 0.0 35 44 241 250 241 253 0.82 P-loop containing region of AAA domain AAA_29 PF13555.6 61 pNAAH01000003_00010 - 580 0.094 12.5 0.7 2 2 0.00012 0.19 11.5 0.1 15 39 359 383 354 395 0.80 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 114 pNAAH01000003_00010 - 580 0.11 12.6 0.9 1 1 0.00033 0.53 10.4 0.9 2 42 369 417 368 550 0.69 50S ribosome-binding GTPase DHO_dh PF01180.21 295 pNAAH01000003_00011 - 352 2.7e-72 243.5 0.1 1 1 5.3e-76 3.1e-72 243.3 0.1 2 295 51 335 50 335 0.94 Dihydroorotate dehydrogenase ThiI PF02568.14 197 pNAAH01000003_00011 - 352 0.031 13.9 0.0 1 2 0.58 3.4e+03 -2.6 0.0 143 182 142 186 132 191 0.69 Thiamine biosynthesis protein (ThiI) ThiI PF02568.14 197 pNAAH01000003_00011 - 352 0.031 13.9 0.0 2 2 1.4e-05 0.086 12.4 0.0 4 56 283 335 281 350 0.77 Thiamine biosynthesis protein (ThiI) PcrB PF01884.17 226 pNAAH01000003_00011 - 352 0.069 12.6 0.1 1 2 0.018 1.1e+02 2.1 0.0 6 46 210 254 205 259 0.71 PcrB family PcrB PF01884.17 226 pNAAH01000003_00011 - 352 0.069 12.6 0.1 2 2 0.00024 1.4 8.3 0.0 173 211 276 316 266 331 0.74 PcrB family Peptidase_M16_C PF05193.21 183 pNAAH01000003_00012 - 416 7.8e-31 107.5 1.1 1 3 0.038 2.2e+02 1.7 0.0 137 166 83 112 46 123 0.77 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 pNAAH01000003_00012 - 416 7.8e-31 107.5 1.1 2 3 1.8e-33 1.1e-29 103.8 0.3 1 182 169 346 169 347 0.90 Peptidase M16 inactive domain Peptidase_M16_C PF05193.21 183 pNAAH01000003_00012 - 416 7.8e-31 107.5 1.1 3 3 0.81 4.9e+03 -2.6 0.0 2 22 387 407 386 409 0.64 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 149 pNAAH01000003_00012 - 416 8.6e-25 87.5 0.0 1 1 3.2e-28 1.9e-24 86.3 0.0 6 117 20 131 15 143 0.94 Insulinase (Peptidase family M16) LuxS PF02664.15 154 pNAAH01000003_00012 - 416 0.022 14.4 0.0 1 2 0.0028 17 5.1 0.0 26 107 21 110 8 124 0.68 S-Ribosylhomocysteinase (LuxS) LuxS PF02664.15 154 pNAAH01000003_00012 - 416 0.022 14.4 0.0 2 2 0.00088 5.3 6.7 0.0 87 127 190 230 187 243 0.84 S-Ribosylhomocysteinase (LuxS) DHDPS PF00701.22 289 pNAAH01000003_00013 - 298 1.8e-88 296.0 0.2 1 1 2.5e-92 2.3e-88 295.7 0.2 4 287 8 291 6 293 0.97 Dihydrodipicolinate synthetase family CTK3 PF12243.8 123 pNAAH01000003_00013 - 298 0.068 13.2 0.0 1 2 3.5e-05 0.32 11.0 0.0 72 100 17 48 5 69 0.82 CTD kinase subunit gamma CTK3 CTK3 PF12243.8 123 pNAAH01000003_00013 - 298 0.068 13.2 0.0 2 2 0.22 2e+03 -1.3 0.0 86 114 210 238 199 247 0.66 CTD kinase subunit gamma CTK3 adh_short_C2 PF13561.6 234 pNAAH01000003_00014 - 259 3.4e-59 200.2 1.1 1 1 9.3e-63 4.2e-59 200.0 1.1 3 234 16 257 14 257 0.96 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 195 pNAAH01000003_00014 - 259 1.6e-33 115.8 2.4 1 1 4.2e-37 1.9e-33 115.6 2.4 1 189 8 204 8 210 0.96 short chain dehydrogenase KR PF08659.10 180 pNAAH01000003_00014 - 259 0.00012 22.1 0.1 1 1 5.6e-08 0.00025 21.0 0.1 2 164 9 179 8 194 0.78 KR domain RRM_3 PF08777.11 102 pNAAH01000003_00014 - 259 0.016 15.3 0.3 1 2 0.0007 3.1 7.9 0.2 40 89 32 83 22 88 0.84 RNA binding motif RRM_3 PF08777.11 102 pNAAH01000003_00014 - 259 0.016 15.3 0.3 2 2 0.0048 21 5.2 0.0 48 94 165 213 148 218 0.74 RNA binding motif DUF1129 PF06570.11 206 pNAAH01000003_00015 - 101 0.24 10.9 5.2 1 1 3.7e-05 0.67 9.4 3.4 80 129 1 68 1 74 0.83 Protein of unknown function (DUF1129) Lactamase_B PF00753.27 197 pNAAH01000003_00016 - 198 1.7e-26 93.4 0.0 1 1 2.5e-30 2.2e-26 93.1 0.0 4 197 11 178 8 178 0.88 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 201 pNAAH01000003_00016 - 198 0.00014 21.5 0.2 1 1 2e-08 0.00018 21.1 0.2 3 67 25 78 24 139 0.79 Beta-lactamase superfamily domain NAD_synthase PF02540.17 242 pNAAH01000003_00017 - 246 3.7e-79 265.2 0.1 1 1 1.4e-82 4.2e-79 265.1 0.1 2 242 7 241 6 241 0.96 NAD synthase RPAP1_N PF08621.10 46 pNAAH01000003_00017 - 246 6.6e-06 25.8 0.6 1 2 0.087 2.6e+02 1.5 0.0 29 44 33 48 30 50 0.85 RPAP1-like, N-terminal RPAP1_N PF08621.10 46 pNAAH01000003_00017 - 246 6.6e-06 25.8 0.6 2 2 4.3e-08 0.00013 21.7 0.7 23 45 212 234 208 235 0.89 RPAP1-like, N-terminal tRNA_Me_trans PF03054.16 356 pNAAH01000003_00017 - 246 1.2e-05 24.3 0.0 1 2 3.1e-07 0.00092 18.1 0.0 3 72 26 87 24 98 0.79 tRNA methyl transferase tRNA_Me_trans PF03054.16 356 pNAAH01000003_00017 - 246 1.2e-05 24.3 0.0 2 2 0.0058 17 4.0 0.0 162 194 148 182 141 185 0.80 tRNA methyl transferase QueC PF06508.13 210 pNAAH01000003_00017 - 246 0.00031 20.3 0.0 1 2 3.6e-07 0.0011 18.5 0.0 3 64 27 88 25 109 0.83 Queuosine biosynthesis protein QueC QueC PF06508.13 210 pNAAH01000003_00017 - 246 0.00031 20.3 0.0 2 2 0.45 1.3e+03 -1.4 0.0 157 176 153 172 149 179 0.86 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 355 pNAAH01000003_00017 - 246 0.0013 18.5 0.0 1 1 6.8e-07 0.002 17.8 0.0 22 196 28 204 12 236 0.61 Asparagine synthase ATP_bind_3 PF01171.20 182 pNAAH01000003_00017 - 246 0.04 13.7 0.0 1 1 2.1e-05 0.063 13.0 0.0 2 86 26 114 25 134 0.62 PP-loop family LpxK PF02606.14 327 pNAAH01000003_00018 - 308 1.6e-38 132.6 0.0 1 2 6e-32 5.4e-28 98.0 0.0 2 187 26 203 25 212 0.88 Tetraacyldisaccharide-1-P 4'-kinase LpxK PF02606.14 327 pNAAH01000003_00018 - 308 1.6e-38 132.6 0.0 2 2 5.2e-12 4.7e-08 32.5 0.4 228 326 215 303 206 304 0.85 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.29 132 pNAAH01000003_00018 - 308 0.051 14.0 0.2 1 2 1.7e-05 0.16 12.4 0.1 8 66 66 154 64 163 0.80 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pNAAH01000003_00018 - 308 0.051 14.0 0.2 2 2 0.53 4.8e+03 -2.1 0.0 11 51 216 258 211 264 0.71 ATPase family associated with various cellular activities (AAA) PALP PF00291.25 294 pNAAH01000003_00019 - 470 1.4e-09 37.8 0.0 1 1 3.8e-13 2.3e-09 37.1 0.0 7 226 81 318 76 341 0.75 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 79 pNAAH01000003_00019 - 470 2.1e-07 31.1 0.3 1 3 2e-10 1.2e-06 28.6 0.0 5 72 6 72 2 74 0.86 Threonine synthase N terminus Thr_synth_N PF14821.6 79 pNAAH01000003_00019 - 470 2.1e-07 31.1 0.3 2 3 0.66 3.9e+03 -1.9 0.1 42 62 214 234 205 247 0.73 Threonine synthase N terminus Thr_synth_N PF14821.6 79 pNAAH01000003_00019 - 470 2.1e-07 31.1 0.3 3 3 2 1.2e+04 -3.4 0.0 55 76 282 306 270 308 0.63 Threonine synthase N terminus CbiA PF01656.23 128 pNAAH01000003_00019 - 470 0.039 14.0 0.0 1 2 0.12 7.1e+02 0.2 0.0 64 88 96 125 18 138 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain CbiA PF01656.23 128 pNAAH01000003_00019 - 470 0.039 14.0 0.0 2 2 9.8e-05 0.59 10.2 0.0 20 116 170 375 169 380 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain CTP_transf_3 PF02348.19 221 pNAAH01000003_00020 - 239 9.6e-46 156.5 0.3 1 1 2e-49 1.2e-45 156.1 0.3 1 221 1 211 1 211 0.94 Cytidylyltransferase NTP_transf_3 PF12804.7 160 pNAAH01000003_00020 - 239 1.3e-05 25.6 0.0 1 1 2.6e-09 1.6e-05 25.4 0.0 8 107 9 107 7 203 0.88 MobA-like NTP transferase domain HTH_19 PF12844.7 65 pNAAH01000003_00020 - 239 0.0091 16.0 2.0 1 3 0.087 5.2e+02 0.8 0.0 41 56 45 60 43 64 0.87 Helix-turn-helix domain HTH_19 PF12844.7 65 pNAAH01000003_00020 - 239 0.0091 16.0 2.0 2 3 1.5 9.2e+03 -3.2 0.0 11 19 126 134 126 140 0.80 Helix-turn-helix domain HTH_19 PF12844.7 65 pNAAH01000003_00020 - 239 0.0091 16.0 2.0 3 3 7.8e-06 0.047 13.7 0.4 4 45 179 219 176 238 0.84 Helix-turn-helix domain MAF_flag10 PF01973.18 171 pNAAH01000019_00001 - 462 3.7e-42 143.9 0.7 1 2 6.1e-46 5.4e-42 143.4 0.1 2 170 59 226 58 227 0.91 Protein of unknown function DUF115 MAF_flag10 PF01973.18 171 pNAAH01000019_00001 - 462 3.7e-42 143.9 0.7 2 2 0.84 7.5e+03 -3.5 0.0 60 91 359 390 358 395 0.70 Protein of unknown function DUF115 Med15_fungi PF05397.12 112 pNAAH01000019_00001 - 462 0.011 16.0 0.7 1 2 0.041 3.7e+02 1.4 0.0 78 108 260 290 243 292 0.83 Mediator complex subunit 15 Med15_fungi PF05397.12 112 pNAAH01000019_00001 - 462 0.011 16.0 0.7 2 2 1.6e-05 0.15 12.4 0.2 56 105 339 388 325 394 0.85 Mediator complex subunit 15 GTP_EFTU PF00009.27 194 pNC_006134_00001 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pNC_006134_00001 - 639 3.7e-23 81.6 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pNC_006134_00001 - 639 3.7e-23 81.6 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pNC_006134_00001 - 639 1.2e-16 60.5 0.0 1 1 1.7e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pNC_006134_00001 - 639 1.3e-13 50.8 0.1 1 1 1.6e-16 2.8e-13 49.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pNC_006134_00001 - 639 1.3e-06 28.5 0.2 1 2 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase MMR_HSR1 PF01926.23 114 pNC_006134_00001 - 639 1.3e-06 28.5 0.2 2 2 4.9 8.8e+03 -3.2 0.0 67 87 261 286 255 313 0.59 50S ribosome-binding GTPase RF3_C PF16658.5 131 pNC_006134_00001 - 639 0.0027 17.5 0.0 1 1 3.4e-06 0.0061 16.4 0.0 14 82 349 417 341 434 0.79 Class II release factor RF3, C-terminal domain GTP_EFTU_D2 PF03144.25 74 pNC_006134_00001 - 639 0.012 16.0 0.0 1 1 1.4e-05 0.024 15.0 0.0 2 58 264 314 263 319 0.88 Elongation factor Tu domain 2 Septin PF00735.18 281 pNC_006134_00001 - 639 0.02 14.2 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pNC_006134_00001 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 pNC_006134_00001 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 pNC_006134_00002 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pNC_006134_00002 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 pNC_006134_00004 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pNC_006134_00004 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pNC_006134_00004 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain CtsR_C PF17727.1 72 pNC_006134_00005 - 102 0.019 15.1 0.2 1 2 0.00017 3 8.0 0.0 3 38 31 66 27 73 0.86 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pNC_006134_00005 - 102 0.019 15.1 0.2 2 2 0.0014 24 5.1 0.0 28 49 74 95 71 101 0.84 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pNC_006134_00006 - 117 0.0057 16.0 1.4 1 3 6.3e-07 0.0057 16.0 1.4 18 43 3 28 1 30 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pNC_006134_00006 - 117 0.0057 16.0 1.4 2 3 1 9e+03 -3.8 0.3 16 22 52 58 51 61 0.49 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pNC_006134_00006 - 117 0.0057 16.0 1.4 3 3 0.77 6.9e+03 -3.4 0.9 17 29 76 88 74 92 0.65 Putative Flagellin, Flp1-like, domain vMSA PF00695.19 400 pNC_006134_00006 - 117 1.9 7.5 5.4 1 1 0.00025 2.3 7.2 5.4 328 398 9 85 1 87 0.72 Major surface antigen from hepadnavirus LysE PF01810.18 193 pNC_006134_00007 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pNC_006134_00007 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pNC_006134_00007 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pNC_006134_00007 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pNC_006134_00007 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pNC_006134_00007 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pNC_006134_00007 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pNC_006134_00007 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pNC_006134_00007 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 pNC_006134_00008 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pNC_006134_00008 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pNC_006134_00008 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pNC_006134_00008 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pNC_006134_00008 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pNC_006134_00008 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pNC_006134_00009 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pNC_006134_00009 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pNC_006134_00010 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pNC_006134_00010 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pNC_006134_00010 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pNC_006134_00010 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pNC_006134_00010 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pNC_006134_00010 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pNC_006134_00011 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pNC_006134_00012 - 1932 3.1e-16 59.1 2.7 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pNC_006134_00012 - 1932 3.1e-16 59.1 2.7 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pNC_006134_00012 - 1932 3.1e-16 59.1 2.7 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1876 1924 1846 1925 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pNC_006134_00012 - 1932 4.9e-08 33.2 8.3 1 2 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pNC_006134_00012 - 1932 4.9e-08 33.2 8.3 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1799 1910 1725 1932 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pNC_006134_00012 - 1932 1e-06 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pNC_006134_00012 - 1932 1e-06 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pNC_006134_00012 - 1932 9.2e-06 25.5 1.8 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pNC_006134_00012 - 1932 9.2e-06 25.5 1.8 2 2 0.12 4.2e+02 0.6 0.0 119 150 1883 1916 1828 1931 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 pNC_006134_00012 - 1932 3.7e-05 24.2 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pNC_006134_00012 - 1932 3.7e-05 24.2 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 664 701 655 716 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 pNC_006134_00013 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 pNC_006134_00013 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 pNC_006134_00013 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 pNC_006134_00013 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) Acetyltransf_7 PF13508.7 76 pNC_006134_00014 - 246 0.00022 21.6 0.0 1 1 7.1e-08 0.00042 20.7 0.0 29 75 79 143 37 144 0.67 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pNC_006134_00014 - 246 0.0032 17.7 0.0 1 1 1.3e-06 0.0079 16.4 0.0 64 92 81 109 56 142 0.78 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 pNC_006134_00014 - 246 0.0091 16.0 0.3 1 1 2.8e-06 0.017 15.2 0.3 24 67 171 214 154 218 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Relaxase PF03432.14 242 pNC_006134_00015 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pNC_006134_00015 - 462 4.7e-10 39.5 7.4 2 2 0.0071 1.3e+02 2.0 5.4 119 183 326 395 318 430 0.69 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pNC_006134_00016 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pNC_006134_00016 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pNC_006134_00016 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pNC_006134_00016 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pNC_006134_00016 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pNC_006134_00016 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pNC_006134_00016 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pNC_006134_00016 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pNC_006134_00016 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pNC_006134_00016 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pNC_006134_00016 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 pNC_006134_00017 - 93 0.16 11.8 9.8 1 2 3e-05 0.18 11.7 6.9 18 50 6 38 3 41 0.91 CdvA-like coiled-coil domain CdvA PF18822.1 123 pNC_006134_00017 - 93 0.16 11.8 9.8 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ZYG-11_interact PF05884.12 295 pNC_006134_00017 - 93 0.22 10.9 0.5 1 1 4.3e-05 0.26 10.7 0.5 38 84 5 60 2 76 0.77 Interactor of ZYG-11 ESP PF16590.5 91 pNC_006134_00017 - 93 0.6 10.4 5.4 1 2 0.037 2.2e+02 2.2 1.0 26 71 3 45 2 50 0.68 Exocrine gland-secreting peptide ESP PF16590.5 91 pNC_006134_00017 - 93 0.6 10.4 5.4 2 2 4.2e-05 0.25 11.6 0.5 26 58 43 78 40 91 0.79 Exocrine gland-secreting peptide Toprim_3 PF13362.6 95 pNC_006134_00019 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pNC_006134_00019 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pNC_006134_00019 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pNC_006134_00019 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pNC_006134_00019 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pNC_006134_00020 - 92 0.0072 16.3 0.0 1 1 7.4e-07 0.013 15.4 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) Sdh_cyt PF01127.22 121 pNC_006134_00021 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 pNC_006134_00021 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 pNC_006134_00021 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pNC_006134_00023 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pNC_006134_00024 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pNC_006134_00025 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pNC_006134_00025 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pNC_006134_00025 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pNC_006134_00025 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pNC_006134_00025 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pNC_006134_00025 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 pNC_006134_00025 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pNC_006134_00025 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pNC_006134_00025 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pNC_006134_00025 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pNC_006134_00025 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pNC_006134_00025 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pNC_006134_00025 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 pNC_006134_00026 - 204 2.5e-34 118.5 0.6 1 1 7.4e-38 3.3e-34 118.1 0.6 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pNC_006134_00026 - 204 0.025 14.3 0.6 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pNC_006134_00026 - 204 0.025 14.3 0.6 2 3 0.0021 9.6 6.1 0.0 2 36 117 152 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pNC_006134_00026 - 204 0.025 14.3 0.6 3 3 0.0036 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pNC_006134_00026 - 204 0.05 13.6 4.8 1 3 5.8e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pNC_006134_00026 - 204 0.05 13.6 4.8 2 3 1.5 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pNC_006134_00026 - 204 0.05 13.6 4.8 3 3 0.024 1.1e+02 3.0 0.1 39 55 159 175 153 177 0.91 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pNC_006134_00026 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pNC_006134_00026 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pNC_006134_00026 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pNC_006134_00027 - 135 0.00056 20.0 0.0 1 2 7.8e-08 0.0014 18.8 0.0 4 53 7 71 4 93 0.79 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pNC_006134_00027 - 135 0.00056 20.0 0.0 2 2 0.0096 1.7e+02 2.5 0.0 12 35 55 77 53 106 0.80 CRISPR associated protein Cas2 TrbC PF04956.13 99 pNC_006134_00029 - 87 6.2e-13 48.8 6.8 1 1 7.4e-17 6.6e-13 48.7 6.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pNC_006134_00029 - 87 0.61 9.9 6.3 1 1 0.00015 1.3 8.9 6.2 108 135 60 87 10 87 0.72 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pNC_006134_00030 - 922 7.1e-51 173.2 0.4 1 1 2.7e-54 1.6e-50 172.1 0.4 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pNC_006134_00030 - 922 2.6e-21 75.7 1.0 1 1 7.4e-25 4.4e-21 74.9 1.0 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pNC_006134_00030 - 922 0.046 13.2 0.1 1 1 1.6e-05 0.097 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pNC_006134_00031 - 188 1.8e-31 108.5 0.0 1 1 3.2e-35 2.9e-31 107.9 0.0 2 88 24 122 23 122 0.89 Phage regulatory protein Rha (Phage_pRha) Y_Y_Y PF07495.13 66 pNC_006134_00031 - 188 0.1 12.6 0.3 1 1 2e-05 0.18 11.8 0.3 19 63 126 174 122 177 0.80 Y_Y_Y domain PBECR2 PF18810.1 119 pNC_006134_00032 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 SSB PF00436.25 104 pNC_006134_00033 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pNC_006134_00034 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pNC_006134_00034 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pNC_006134_00034 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pNC_006134_00034 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pNC_006134_00034 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pNC_006134_00034 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pNC_006134_00034 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pNC_006134_00035 - 328 1e-28 101.1 13.2 1 1 5.6e-32 1.4e-28 100.6 13.2 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pNC_006134_00035 - 328 0.0082 16.3 2.4 1 3 0.45 1.1e+03 -0.2 0.0 30 54 134 158 116 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pNC_006134_00035 - 328 0.0082 16.3 2.4 2 3 8.2e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pNC_006134_00035 - 328 0.0082 16.3 2.4 3 3 2.2 5.7e+03 -2.5 0.0 60 83 300 323 291 327 0.69 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 pNC_006134_00035 - 328 0.016 15.9 0.9 1 2 1.8 4.5e+03 -1.7 0.0 54 69 123 138 98 163 0.56 von Willebrand factor type A domain VWA_2 PF13519.6 107 pNC_006134_00035 - 328 0.016 15.9 0.9 2 2 1.4e-05 0.036 14.7 0.2 31 84 208 270 197 309 0.85 von Willebrand factor type A domain KMP11 PF03037.16 90 pNC_006134_00035 - 328 0.02 15.7 0.1 1 2 6.6e-05 0.17 12.7 0.0 8 56 91 139 88 174 0.82 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 pNC_006134_00035 - 328 0.02 15.7 0.1 2 2 4.4 1.1e+04 -2.7 0.0 9 21 235 247 228 267 0.50 Kinetoplastid membrane protein 11 AATF-Che1 PF13339.6 139 pNC_006134_00035 - 328 0.023 15.3 12.3 1 2 0.024 62 4.3 0.7 48 135 107 145 42 185 0.60 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pNC_006134_00035 - 328 0.023 15.3 12.3 2 2 1.1e-05 0.028 15.1 5.0 49 125 225 315 205 322 0.71 Apoptosis antagonizing transcription factor Tissue_fac PF01108.17 107 pNC_006134_00035 - 328 0.029 14.2 0.1 1 1 2.4e-05 0.062 13.2 0.1 4 64 80 148 76 182 0.68 Tissue factor Allexi_40kDa PF05549.11 271 pNC_006134_00035 - 328 1.2 8.6 6.3 1 2 0.045 1.1e+02 2.1 0.1 36 125 46 140 30 172 0.72 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pNC_006134_00035 - 328 1.2 8.6 6.3 2 2 0.00047 1.2 8.6 2.0 61 145 212 293 191 320 0.59 Allexivirus 40kDa protein TrbL PF04610.14 215 pNC_006134_00036 - 330 1.4e-29 103.5 34.4 1 2 1.5e-33 1.4e-29 103.5 34.4 1 214 38 250 38 251 0.92 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pNC_006134_00036 - 330 1.4e-29 103.5 34.4 2 2 0.055 4.9e+02 0.3 0.4 35 86 245 293 241 324 0.56 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pNC_006134_00036 - 330 0.097 12.5 1.3 1 2 0.27 2.4e+03 -1.6 0.1 39 51 69 81 60 113 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pNC_006134_00036 - 330 0.097 12.5 1.3 2 2 2.4e-05 0.21 11.4 0.1 27 81 230 286 198 298 0.74 T-cell leukemia translocation-altered Trep_dent_lipo PF09710.10 397 pNC_006134_00037 - 54 0.034 13.1 1.0 1 1 5.2e-06 0.031 13.2 1.0 3 25 3 24 1 53 0.80 Treponema clustered lipoprotein (Trep_dent_lipo) La_HTH_kDCL PF18177.1 90 pNC_006134_00037 - 54 0.19 12.0 0.0 1 1 3.6e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain PsbT PF01405.17 29 pNC_006134_00037 - 54 1.1 9.1 5.2 1 1 0.00027 1.6 8.6 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pNC_006134_00038 - 219 1.6e-52 178.5 0.5 1 1 1.9e-56 1.7e-52 178.4 0.5 5 214 11 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pNC_006134_00038 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pNC_006134_00039 - 296 4.2e-56 190.0 1.7 1 1 1.1e-59 6.7e-56 189.3 1.7 2 211 31 271 30 271 0.92 Conjugal transfer protein TraE PF05309.11 182 pNC_006134_00039 - 296 0.022 14.2 0.1 1 1 6.6e-06 0.039 13.3 0.1 107 171 89 154 86 161 0.83 TraE protein Rho_RNA_bind PF07497.12 73 pNC_006134_00039 - 296 0.068 13.0 0.0 1 2 1.5 9.2e+03 -3.4 0.0 9 22 79 92 76 97 0.79 Rho termination factor, RNA-binding domain Rho_RNA_bind PF07497.12 73 pNC_006134_00039 - 296 0.068 13.0 0.0 2 2 3.3e-05 0.2 11.6 0.0 21 49 241 269 232 288 0.84 Rho termination factor, RNA-binding domain TrbI PF03743.14 187 pNC_006134_00040 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.4e+03 -3.4 0.3 136 154 140 166 120 172 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pNC_006134_00040 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pNC_006134_00040 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease T2SSE PF00437.20 273 pNC_006134_00041 - 335 1.5e-54 184.9 0.0 1 1 3.1e-57 1.7e-54 184.7 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pNC_006134_00041 - 335 7e-05 23.4 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pNC_006134_00041 - 335 0.00011 21.6 0.0 1 1 3.1e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pNC_006134_00041 - 335 0.00029 20.4 0.0 1 1 9.1e-07 0.00051 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pNC_006134_00041 - 335 0.0014 18.9 0.0 1 1 4.6e-06 0.0026 18.0 0.0 5 56 160 221 155 243 0.71 AAA domain DEAD PF00270.29 176 pNC_006134_00041 - 335 0.0014 18.4 0.0 1 1 4e-06 0.0022 17.8 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pNC_006134_00041 - 335 0.0025 17.6 0.0 1 1 9.5e-06 0.0053 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pNC_006134_00041 - 335 0.0035 17.3 0.0 1 1 1.3e-05 0.0071 16.3 0.0 10 45 152 186 140 194 0.75 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pNC_006134_00041 - 335 0.0055 15.7 0.0 1 1 1.4e-05 0.0078 15.2 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pNC_006134_00041 - 335 0.0073 16.2 0.0 1 1 2.2e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pNC_006134_00041 - 335 0.0087 15.4 0.0 1 1 2.5e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pNC_006134_00041 - 335 0.0092 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 304 0.86 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pNC_006134_00041 - 335 0.019 15.1 0.0 1 1 6.3e-05 0.035 14.2 0.0 27 48 164 185 141 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 pNC_006134_00041 - 335 0.021 13.8 0.0 1 1 6.1e-05 0.034 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 pNC_006134_00041 - 335 0.022 14.8 0.1 1 1 9.7e-05 0.054 13.5 0.0 5 50 147 186 135 244 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 pNC_006134_00041 - 335 0.024 14.4 0.0 1 1 9e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 pNC_006134_00041 - 335 0.026 14.2 0.0 1 1 9.6e-05 0.054 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pNC_006134_00041 - 335 0.037 13.5 0.0 1 1 0.00011 0.06 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 pNC_006134_00041 - 335 0.039 14.0 0.1 1 1 0.00019 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 pNC_006134_00041 - 335 0.039 13.7 0.0 1 1 0.00011 0.063 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pNC_006134_00041 - 335 0.046 13.0 0.0 1 1 0.00014 0.08 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin RNA_helicase PF00910.22 107 pNC_006134_00041 - 335 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase PRK PF00485.18 197 pNC_006134_00041 - 335 0.056 13.2 0.0 1 1 0.00019 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pNC_006134_00041 - 335 0.066 11.8 0.0 1 1 0.00016 0.09 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pNC_006134_00041 - 335 0.074 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pNC_006134_00041 - 335 0.088 12.7 0.0 1 1 0.00035 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pNC_006134_00041 - 335 0.097 12.6 0.5 1 1 0.00043 0.24 11.3 0.3 71 102 149 179 129 200 0.79 Microtubule binding NTPase_1 PF03266.15 168 pNC_006134_00041 - 335 0.11 12.4 0.1 1 1 0.00041 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 pNC_006134_00041 - 335 0.13 12.8 0.1 1 1 0.00069 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 pNC_006134_00041 - 335 0.15 11.7 0.0 1 1 0.00042 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pNC_006134_00041 - 335 0.15 11.8 0.0 1 1 0.00043 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pNC_006134_00041 - 335 0.35 11.3 3.8 1 2 2.6 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 pNC_006134_00041 - 335 0.35 11.3 3.8 2 2 0.00066 0.37 11.3 1.3 22 37 163 178 160 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pNC_006134_00042 - 603 1.4e-105 353.8 0.1 1 1 3.2e-109 1.9e-105 353.4 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pNC_006134_00042 - 603 1.1e-24 86.8 0.0 1 1 3.5e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pNC_006134_00042 - 603 6.2e-16 58.3 0.0 1 2 1.2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pNC_006134_00042 - 603 6.2e-16 58.3 0.0 2 2 1.9e-14 1.1e-10 41.0 0.0 187 370 347 532 308 543 0.80 Type IV secretion-system coupling protein DNA-binding domain Cag12 PF13117.6 97 pNC_006134_00043 - 143 1e-16 61.2 0.1 1 1 1.5e-20 1.3e-16 60.8 0.1 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pNC_006134_00043 - 143 0.062 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 pNC_006134_00044 - 252 9.5e-39 132.8 1.2 1 1 6.7e-43 1.2e-38 132.5 1.2 1 154 25 190 25 192 0.91 TrbM PRELI PF04707.14 157 pNC_006134_00045 - 266 0.028 14.2 2.2 1 2 0.49 1.8e+03 -1.4 0.1 122 129 35 42 4 73 0.51 PRELI-like family PRELI PF04707.14 157 pNC_006134_00045 - 266 0.028 14.2 2.2 2 2 9.1e-06 0.033 14.0 0.3 96 155 84 148 79 150 0.87 PRELI-like family Prismane PF03063.20 511 pNC_006134_00045 - 266 0.14 10.8 0.0 1 1 5.3e-05 0.19 10.4 0.0 75 191 94 216 78 231 0.73 Prismane/CO dehydrogenase family TACC_C PF05010.14 201 pNC_006134_00045 - 266 2.3 8.0 10.0 1 1 0.00099 3.6 7.3 7.9 13 125 2 113 1 138 0.78 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Mod_r PF07200.13 146 pNC_006134_00045 - 266 4.6 7.4 12.1 1 2 0.014 50 4.0 9.2 10 135 15 161 2 165 0.63 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 pNC_006134_00045 - 266 4.6 7.4 12.1 2 2 0.47 1.7e+03 -1.0 0.0 65 88 207 230 204 259 0.71 Modifier of rudimentary (Mod(r)) protein IFT20 PF14931.6 119 pNC_006134_00045 - 266 5.4 7.2 10.4 1 3 0.15 5.2e+02 0.8 0.3 25 46 24 45 1 56 0.50 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 pNC_006134_00045 - 266 5.4 7.2 10.4 2 3 0.00037 1.3 9.2 0.8 25 54 90 119 82 127 0.89 Intraflagellar transport complex B, subunit 20 IFT20 PF14931.6 119 pNC_006134_00045 - 266 5.4 7.2 10.4 3 3 0.042 1.5e+02 2.5 0.2 23 43 121 141 116 165 0.75 Intraflagellar transport complex B, subunit 20 CdhD PF03599.16 386 pNC_006134_00047 - 206 0.0071 15.1 0.0 1 1 1.9e-06 0.012 14.4 0.0 283 358 11 87 2 96 0.87 CO dehydrogenase/acetyl-CoA synthase delta subunit Redoxin PF08534.10 147 pNC_006134_00047 - 206 0.028 14.1 0.9 1 2 0.082 4.9e+02 0.4 0.1 119 146 11 36 4 37 0.82 Redoxin Redoxin PF08534.10 147 pNC_006134_00047 - 206 0.028 14.1 0.9 2 2 3e-05 0.18 11.5 0.1 49 76 144 173 138 191 0.79 Redoxin YnfE PF17452.2 78 pNC_006134_00047 - 206 0.12 12.6 0.1 1 3 2.1e-05 0.12 12.6 0.1 11 33 10 32 5 47 0.88 Uncharacterized YnfE-like YnfE PF17452.2 78 pNC_006134_00047 - 206 0.12 12.6 0.1 2 3 0.31 1.8e+03 -0.7 0.3 36 50 143 157 136 185 0.64 Uncharacterized YnfE-like YnfE PF17452.2 78 pNC_006134_00047 - 206 0.12 12.6 0.1 3 3 0.84 5e+03 -2.1 1.5 26 38 184 195 170 205 0.48 Uncharacterized YnfE-like Topoisom_bac PF01131.20 413 pNC_006134_00048 - 730 2.7e-97 326.4 7.4 1 1 3.6e-100 3.8e-97 325.9 7.4 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pNC_006134_00048 - 730 7.1e-12 45.5 2.2 1 2 1.3e-14 1.4e-11 44.5 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pNC_006134_00048 - 730 7.1e-12 45.5 2.2 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pNC_006134_00048 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pNC_006134_00048 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pNC_006134_00048 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pNC_006134_00048 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pNC_006134_00048 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pNC_006134_00048 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pNC_006134_00048 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pNC_006134_00048 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pNC_006134_00048 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pNC_006134_00048 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pNC_006134_00048 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pNC_006134_00048 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pNC_006134_00048 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pNC_006134_00048 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pNC_006134_00048 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain zf-LITAF-like PF10601.9 70 pNC_006134_00048 - 730 0.096 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pNC_006134_00048 - 730 0.096 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain EF-hand_8 PF13833.6 55 pNC_006134_00048 - 730 0.1 12.5 0.0 1 1 0.00031 0.33 10.8 0.0 26 53 94 121 89 123 0.90 EF-hand domain pair HTH_34 PF13601.6 80 pNC_006134_00048 - 730 0.44 10.8 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pNC_006134_00048 - 730 0.44 10.8 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pNC_006134_00048 - 730 0.44 10.8 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pNC_006134_00048 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pNC_006134_00048 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pNC_006134_00048 - 730 0.63 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pNC_006134_00048 - 730 0.63 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pNC_006134_00048 - 730 0.74 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pNC_006134_00048 - 730 0.74 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pNC_006134_00048 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pNC_006134_00048 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pNC_006134_00048 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pNC_006134_00048 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pNC_006134_00049 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pNC_006134_00049 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pNC_006135_00001 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pNC_006135_00001 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pNC_006135_00001 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pNC_006135_00001 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pNC_006135_00001 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pNC_006135_00001 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pNC_006135_00001 - 639 0.00029 21.1 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pNC_006135_00001 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pNC_006135_00001 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pNC_006135_00001 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 pNC_006135_00001 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 pNC_006135_00002 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pNC_006135_00002 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 pNC_006135_00004 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pNC_006135_00004 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pNC_006135_00004 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 pNC_006135_00005 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pNC_006135_00005 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pNC_006135_00005 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pNC_006135_00005 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pNC_006135_00006 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pNC_006135_00006 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 pNC_006135_00007 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pNC_006135_00007 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pNC_006135_00007 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pNC_006135_00007 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pNC_006135_00007 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pNC_006135_00007 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pNC_006135_00007 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pNC_006135_00007 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pNC_006135_00007 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 pNC_006135_00008 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pNC_006135_00008 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pNC_006135_00008 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pNC_006135_00008 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pNC_006135_00008 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pNC_006135_00008 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pNC_006135_00009 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pNC_006135_00009 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pNC_006135_00010 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pNC_006135_00010 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pNC_006135_00010 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pNC_006135_00010 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pNC_006135_00010 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pNC_006135_00010 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pNC_006135_00011 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pNC_006135_00012 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pNC_006135_00012 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pNC_006135_00012 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 pNC_006135_00012 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pNC_006135_00012 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pNC_006135_00012 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pNC_006135_00012 - 1932 9.9e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pNC_006135_00012 - 1932 9.9e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pNC_006135_00012 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pNC_006135_00012 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 pNC_006135_00012 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pNC_006135_00012 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 pNC_006135_00013 - 234 0.0008 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pNC_006135_00013 - 234 0.033 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 pNC_006135_00014 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pNC_006135_00014 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pNC_006135_00015 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pNC_006135_00015 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pNC_006135_00015 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pNC_006135_00015 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pNC_006135_00015 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pNC_006135_00015 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pNC_006135_00015 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pNC_006135_00015 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pNC_006135_00015 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pNC_006135_00015 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pNC_006135_00015 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 pNC_006135_00016 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pNC_006135_00016 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pNC_006135_00016 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pNC_006135_00016 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pNC_006135_00016 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 pNC_006135_00018 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pNC_006135_00018 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pNC_006135_00019 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pNC_006135_00019 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 pNC_006135_00019 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pNC_006135_00019 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pNC_006135_00019 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pNC_006135_00020 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pNC_006135_00020 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) UBA_6 PF18039.1 42 pNC_006135_00021 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 pNC_006135_00021 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pNC_006135_00021 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 pNC_006135_00021 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 pNC_006135_00022 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pNC_006135_00022 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 pNC_006135_00022 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pNC_006135_00024 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pNC_006135_00025 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pNC_006135_00026 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pNC_006135_00026 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pNC_006135_00026 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pNC_006135_00026 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pNC_006135_00026 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pNC_006135_00026 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pNC_006135_00026 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pNC_006135_00026 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pNC_006135_00026 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pNC_006135_00026 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pNC_006135_00026 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pNC_006135_00026 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 pNC_006135_00027 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pNC_006135_00027 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pNC_006135_00027 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pNC_006135_00027 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pNC_006135_00027 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pNC_006135_00027 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pNC_006135_00027 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pNC_006135_00027 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pNC_006135_00027 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pNC_006135_00027 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pNC_006135_00028 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pNC_006135_00028 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pNC_006135_00028 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pNC_006135_00030 - 87 3.5e-13 49.6 6.7 1 1 4.5e-17 4e-13 49.4 6.7 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pNC_006135_00030 - 87 0.17 11.8 4.4 1 1 2.6e-05 0.23 11.3 4.4 78 135 37 87 9 87 0.70 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pNC_006135_00031 - 883 4.8e-50 170.5 0.5 1 1 1.8e-53 1.1e-49 169.4 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pNC_006135_00031 - 883 6.8e-21 74.3 1.2 1 1 2e-24 1.2e-20 73.5 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pNC_006135_00031 - 883 0.045 13.2 0.1 1 1 1.5e-05 0.092 12.2 0.1 53 153 624 844 622 851 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pNC_006135_00033 - 162 1.5e-21 76.7 0.1 1 1 1.5e-25 2.6e-21 76.0 0.1 16 88 12 96 5 96 0.79 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 pNC_006135_00034 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pNC_006135_00034 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pNC_006135_00034 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pNC_006135_00034 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pNC_006135_00034 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pNC_006135_00034 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pNC_006135_00034 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pNC_006135_00034 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pNC_006135_00034 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pNC_006135_00034 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pNC_006135_00034 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pNC_006135_00034 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pNC_006135_00034 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pNC_006135_00034 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pNC_006135_00035 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pNC_006135_00036 - 91 0.00046 19.9 6.9 1 2 5.3e-08 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pNC_006135_00036 - 91 0.00046 19.9 6.9 2 2 0.014 1.3e+02 2.5 0.2 31 52 57 78 56 80 0.82 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pNC_006135_00036 - 91 0.0053 17.3 1.0 1 1 6.9e-07 0.0062 17.1 1.0 21 87 9 81 1 85 0.90 FliG N-terminal domain T4SS PF07996.11 197 pNC_006135_00037 - 323 7.9e-29 101.5 13.4 1 1 4e-32 1e-28 101.1 13.4 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pNC_006135_00037 - 323 0.0081 16.3 0.6 1 2 0.99 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pNC_006135_00037 - 323 0.0081 16.3 0.6 2 2 1.2e-05 0.03 14.5 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pNC_006135_00037 - 323 0.014 16.1 5.0 1 2 0.046 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pNC_006135_00037 - 323 0.014 16.1 5.0 2 2 5.3e-06 0.014 16.1 5.0 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 pNC_006135_00037 - 323 0.043 14.5 0.8 1 2 2.2 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pNC_006135_00037 - 323 0.043 14.5 0.8 2 2 1.7e-05 0.043 14.5 0.8 32 84 209 270 202 296 0.83 von Willebrand factor type A domain KNOX2 PF03791.13 48 pNC_006135_00037 - 323 0.07 12.6 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pNC_006135_00037 - 323 0.07 12.6 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain THOC7 PF05615.13 132 pNC_006135_00037 - 323 1.2 9.4 11.3 1 2 0.00061 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pNC_006135_00037 - 323 1.2 9.4 11.3 2 2 0.17 4.4e+02 1.1 6.3 16 71 231 294 202 315 0.50 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pNC_006135_00037 - 323 3.5 7.1 7.2 1 2 0.19 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pNC_006135_00037 - 323 3.5 7.1 7.2 2 2 0.00046 1.2 8.6 3.3 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein TrbL PF04610.14 215 pNC_006135_00038 - 281 1.4e-31 110.0 32.1 1 1 1e-35 1.9e-31 109.5 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein Trep_dent_lipo PF09710.10 397 pNC_006135_00039 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pNC_006135_00039 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pNC_006135_00040 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pNC_006135_00040 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pNC_006135_00041 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pNC_006135_00041 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pNC_006135_00041 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pNC_006135_00042 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pNC_006135_00042 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pNC_006135_00043 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pNC_006135_00043 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pNC_006135_00043 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pNC_006135_00043 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pNC_006135_00043 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pNC_006135_00043 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pNC_006135_00043 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pNC_006135_00043 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pNC_006135_00043 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pNC_006135_00043 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pNC_006135_00043 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pNC_006135_00043 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pNC_006135_00043 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pNC_006135_00043 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pNC_006135_00043 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pNC_006135_00043 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pNC_006135_00043 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pNC_006135_00043 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pNC_006135_00043 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pNC_006135_00043 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pNC_006135_00043 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pNC_006135_00043 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pNC_006135_00043 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pNC_006135_00043 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pNC_006135_00043 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pNC_006135_00043 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pNC_006135_00043 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pNC_006135_00043 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pNC_006135_00043 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pNC_006135_00043 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pNC_006135_00043 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pNC_006135_00043 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pNC_006135_00044 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pNC_006135_00044 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pNC_006135_00044 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pNC_006135_00044 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pNC_006135_00044 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pNC_006135_00045 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pNC_006135_00045 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pNC_006135_00045 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pNC_006135_00045 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pNC_006135_00045 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pNC_006135_00046 - 143 5.7e-29 101.1 0.5 1 1 3.6e-33 6.4e-29 100.9 0.5 1 90 24 115 24 139 0.90 TrbM PRELI PF04707.14 157 pNC_006135_00047 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pNC_006135_00047 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pNC_006135_00047 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pNC_006135_00047 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pNC_006135_00047 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pNC_006135_00047 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pNC_006135_00049 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pNC_006135_00049 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pNC_006135_00050 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pNC_006135_00050 - 730 5.6e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pNC_006135_00050 - 730 5.6e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pNC_006135_00050 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pNC_006135_00050 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pNC_006135_00050 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pNC_006135_00050 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pNC_006135_00050 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pNC_006135_00050 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pNC_006135_00050 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pNC_006135_00050 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pNC_006135_00050 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pNC_006135_00050 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pNC_006135_00050 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pNC_006135_00050 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pNC_006135_00050 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pNC_006135_00050 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pNC_006135_00050 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pNC_006135_00050 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pNC_006135_00050 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pNC_006135_00050 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pNC_006135_00050 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pNC_006135_00050 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pNC_006135_00050 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pNC_006135_00050 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pNC_006135_00050 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pNC_006135_00050 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pNC_006135_00050 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pNC_006135_00050 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pNC_006135_00050 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pNC_006135_00050 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pNC_006135_00050 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pNC_006135_00050 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pNC_006135_00050 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pNC_006135_00051 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pNC_006135_00051 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain Acetyltransf_7 PF13508.7 76 pNC_007141_00002 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pNC_007141_00002 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 pNC_007141_00003 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pNC_007141_00003 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pNC_007141_00004 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pNC_007141_00004 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pNC_007141_00004 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pNC_007141_00004 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pNC_007141_00004 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pNC_007141_00004 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pNC_007141_00004 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pNC_007141_00004 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pNC_007141_00004 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pNC_007141_00004 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pNC_007141_00004 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 pNC_007141_00005 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pNC_007141_00005 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pNC_007141_00005 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pNC_007141_00005 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pNC_007141_00005 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 pNC_007141_00007 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pNC_007141_00007 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pNC_007141_00008 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pNC_007141_00008 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 pNC_007141_00008 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pNC_007141_00008 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pNC_007141_00008 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pNC_007141_00009 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pNC_007141_00009 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) UBA_6 PF18039.1 42 pNC_007141_00010 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 pNC_007141_00010 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pNC_007141_00010 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 pNC_007141_00010 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 pNC_007141_00011 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pNC_007141_00011 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 pNC_007141_00011 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pNC_007141_00013 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pNC_007141_00014 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pNC_007141_00015 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pNC_007141_00015 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pNC_007141_00015 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pNC_007141_00015 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pNC_007141_00015 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pNC_007141_00015 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pNC_007141_00015 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pNC_007141_00015 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pNC_007141_00015 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pNC_007141_00015 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pNC_007141_00015 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pNC_007141_00015 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 pNC_007141_00016 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pNC_007141_00016 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pNC_007141_00016 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pNC_007141_00016 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pNC_007141_00016 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pNC_007141_00016 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pNC_007141_00016 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pNC_007141_00016 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pNC_007141_00016 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pNC_007141_00016 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pNC_007141_00017 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pNC_007141_00017 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pNC_007141_00017 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pNC_007141_00019 - 87 3.5e-13 49.6 6.7 1 1 4.5e-17 4e-13 49.4 6.7 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pNC_007141_00019 - 87 0.17 11.8 4.4 1 1 2.6e-05 0.23 11.3 4.4 78 135 37 87 9 87 0.70 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pNC_007141_00020 - 922 4.9e-50 170.5 0.5 1 1 1.9e-53 1.2e-49 169.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pNC_007141_00020 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pNC_007141_00020 - 922 0.048 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pNC_007141_00021 - 188 2e-29 102.0 0.1 1 1 1.9e-33 3.3e-29 101.3 0.1 2 88 24 122 23 122 0.83 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 pNC_007141_00022 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pNC_007141_00022 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pNC_007141_00022 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pNC_007141_00022 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pNC_007141_00022 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pNC_007141_00022 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pNC_007141_00022 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pNC_007141_00022 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pNC_007141_00022 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pNC_007141_00022 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pNC_007141_00022 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pNC_007141_00022 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pNC_007141_00022 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pNC_007141_00022 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pNC_007141_00023 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pNC_007141_00024 - 91 0.00046 19.9 6.9 1 2 5.3e-08 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pNC_007141_00024 - 91 0.00046 19.9 6.9 2 2 0.014 1.3e+02 2.5 0.2 31 52 57 78 56 80 0.82 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pNC_007141_00024 - 91 0.0053 17.3 1.0 1 1 6.9e-07 0.0062 17.1 1.0 21 87 9 81 1 85 0.90 FliG N-terminal domain T4SS PF07996.11 197 pNC_007141_00025 - 323 7.9e-29 101.5 13.4 1 1 4e-32 1e-28 101.1 13.4 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pNC_007141_00025 - 323 0.0081 16.3 0.6 1 2 0.99 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pNC_007141_00025 - 323 0.0081 16.3 0.6 2 2 1.2e-05 0.03 14.5 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pNC_007141_00025 - 323 0.014 16.1 5.0 1 2 0.046 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pNC_007141_00025 - 323 0.014 16.1 5.0 2 2 5.3e-06 0.014 16.1 5.0 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 pNC_007141_00025 - 323 0.043 14.5 0.8 1 2 2.2 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pNC_007141_00025 - 323 0.043 14.5 0.8 2 2 1.7e-05 0.043 14.5 0.8 32 84 209 270 202 296 0.83 von Willebrand factor type A domain KNOX2 PF03791.13 48 pNC_007141_00025 - 323 0.07 12.6 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pNC_007141_00025 - 323 0.07 12.6 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain THOC7 PF05615.13 132 pNC_007141_00025 - 323 1.2 9.4 11.3 1 2 0.00061 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pNC_007141_00025 - 323 1.2 9.4 11.3 2 2 0.17 4.4e+02 1.1 6.3 16 71 231 294 202 315 0.50 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pNC_007141_00025 - 323 3.5 7.1 7.2 1 2 0.19 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pNC_007141_00025 - 323 3.5 7.1 7.2 2 2 0.00046 1.2 8.6 3.3 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein TrbL PF04610.14 215 pNC_007141_00026 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pNC_007141_00026 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pNC_007141_00026 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pNC_007141_00026 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pNC_007141_00026 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pNC_007141_00027 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pNC_007141_00027 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pNC_007141_00028 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pNC_007141_00028 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pNC_007141_00029 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pNC_007141_00029 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pNC_007141_00029 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pNC_007141_00030 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pNC_007141_00030 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pNC_007141_00031 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pNC_007141_00031 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pNC_007141_00031 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pNC_007141_00031 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pNC_007141_00031 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pNC_007141_00031 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pNC_007141_00031 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pNC_007141_00031 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pNC_007141_00031 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pNC_007141_00031 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pNC_007141_00031 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pNC_007141_00031 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pNC_007141_00031 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pNC_007141_00031 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pNC_007141_00031 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pNC_007141_00031 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pNC_007141_00031 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pNC_007141_00031 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pNC_007141_00031 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pNC_007141_00031 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pNC_007141_00031 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pNC_007141_00031 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pNC_007141_00031 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pNC_007141_00031 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pNC_007141_00031 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pNC_007141_00031 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pNC_007141_00031 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pNC_007141_00031 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pNC_007141_00031 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pNC_007141_00031 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pNC_007141_00031 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pNC_007141_00031 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pNC_007141_00032 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pNC_007141_00032 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pNC_007141_00032 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pNC_007141_00032 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pNC_007141_00032 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pNC_007141_00033 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pNC_007141_00033 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pNC_007141_00033 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pNC_007141_00033 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pNC_007141_00033 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pNC_007141_00034 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pNC_007141_00035 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pNC_007141_00035 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pNC_007141_00035 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pNC_007141_00035 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pNC_007141_00035 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pNC_007141_00035 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pNC_007141_00037 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pNC_007141_00037 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pNC_007141_00038 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pNC_007141_00038 - 730 5.6e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pNC_007141_00038 - 730 5.6e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pNC_007141_00038 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pNC_007141_00038 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pNC_007141_00038 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pNC_007141_00038 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pNC_007141_00038 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pNC_007141_00038 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pNC_007141_00038 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pNC_007141_00038 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pNC_007141_00038 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pNC_007141_00038 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pNC_007141_00038 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pNC_007141_00038 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pNC_007141_00038 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pNC_007141_00038 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pNC_007141_00038 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pNC_007141_00038 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pNC_007141_00038 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pNC_007141_00038 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pNC_007141_00038 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pNC_007141_00038 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pNC_007141_00038 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pNC_007141_00038 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pNC_007141_00038 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pNC_007141_00038 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pNC_007141_00038 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pNC_007141_00038 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pNC_007141_00038 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pNC_007141_00038 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pNC_007141_00038 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pNC_007141_00038 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pNC_007141_00038 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pNC_007141_00039 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pNC_007141_00039 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pNC_007141_00041 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pNC_007141_00041 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pNC_007141_00041 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pNC_007141_00041 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pNC_007141_00041 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pNC_007141_00041 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pNC_007141_00041 - 639 0.00029 21.1 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pNC_007141_00041 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pNC_007141_00041 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pNC_007141_00041 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 pNC_007141_00041 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 pNC_007141_00042 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pNC_007141_00042 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 pNC_007141_00044 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pNC_007141_00044 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pNC_007141_00044 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain CtsR_C PF17727.1 72 pNC_007141_00045 - 116 0.039 14.1 0.2 1 2 0.00024 4.3 7.5 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pNC_007141_00045 - 116 0.039 14.1 0.2 2 2 0.0022 40 4.4 0.0 28 48 74 94 71 105 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pNC_007141_00046 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pNC_007141_00046 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain DUF1516 PF07457.11 108 pNC_007141_00047 - 91 0.0042 17.3 0.4 1 1 8.2e-07 0.0049 17.0 0.4 39 87 7 53 1 69 0.77 Protein of unknown function (DUF1516) LysE PF01810.18 193 pNC_007141_00047 - 91 0.0049 16.4 0.1 1 1 9.5e-07 0.0057 16.1 0.1 36 93 5 62 3 80 0.88 LysE type translocator DUF2873 PF11395.8 43 pNC_007141_00047 - 91 1 9.3 0.1 1 3 0.00017 1 9.3 0.1 1 20 1 20 1 23 0.92 Protein of unknown function (DUF2873) DUF2873 PF11395.8 43 pNC_007141_00047 - 91 1 9.3 0.1 2 3 0.16 9.8e+02 -0.3 0.4 14 27 31 41 27 48 0.59 Protein of unknown function (DUF2873) DUF2873 PF11395.8 43 pNC_007141_00047 - 91 1 9.3 0.1 3 3 1.7 1e+04 -3.5 7.8 8 19 76 87 70 89 0.84 Protein of unknown function (DUF2873) S1_2 PF13509.6 61 pNC_007141_00048 - 89 0.093 12.8 0.5 1 2 4.7e-05 0.85 9.7 0.1 5 37 10 44 8 54 0.86 S1 domain S1_2 PF13509.6 61 pNC_007141_00048 - 89 0.093 12.8 0.5 2 2 0.0067 1.2e+02 2.8 0.1 11 34 43 68 39 79 0.78 S1 domain DUF4044 PF13253.6 33 pNC_007141_00049 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pNC_007141_00049 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pNC_007141_00049 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pNC_007141_00049 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pNC_007141_00049 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pNC_007141_00049 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pNC_007141_00050 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pNC_007141_00050 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pNC_007141_00051 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pNC_007141_00051 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pNC_007141_00051 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pNC_007141_00051 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pNC_007141_00051 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pNC_007141_00051 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pNC_007141_00052 - 88 5.4e-07 29.9 1.0 1 1 3.3e-11 5.9e-07 29.8 1.0 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG PDDEXK_9 PF08011.11 105 pNC_007141_00053 - 159 0.017 15.0 0.2 1 1 1.8e-06 0.032 14.1 0.2 11 77 38 106 34 128 0.82 PD-(D/E)XK nuclease superfamily DUF5445 PF17520.2 52 pNC_007141_00054 - 77 1 9.2 12.2 1 1 7.3e-05 1.3 8.9 11.2 7 36 43 71 41 74 0.88 Family of unknown function (DUF5445) W2 PF02020.18 79 pNC_008790_00001 - 357 0.037 14.2 0.0 1 1 5.5e-06 0.099 12.8 0.0 38 77 271 331 267 333 0.86 eIF4-gamma/eIF5/eIF2-epsilon Lip_prot_lig_C PF10437.9 85 pNC_008790_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pNC_008790_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pNC_008790_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pNC_008790_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain Flp1_like PF16982.5 49 pNC_008790_00003 - 132 0.015 14.7 2.9 1 2 8.5e-07 0.015 14.7 2.9 17 43 17 43 16 45 0.90 Putative Flagellin, Flp1-like, domain Flp1_like PF16982.5 49 pNC_008790_00003 - 132 0.015 14.7 2.9 2 2 0.45 8.1e+03 -3.7 0.9 17 29 91 103 89 107 0.64 Putative Flagellin, Flp1-like, domain LysE PF01810.18 193 pNC_008790_00004 - 170 0.0031 17.0 0.6 1 1 2.4e-06 0.0062 16.0 0.6 36 98 5 77 3 137 0.76 LysE type translocator DUF1516 PF07457.11 108 pNC_008790_00004 - 170 0.0059 16.8 1.7 1 1 2.7e-06 0.0069 16.6 0.5 39 103 7 71 1 78 0.75 Protein of unknown function (DUF1516) Pallilysin PF18663.1 118 pNC_008790_00004 - 170 0.01 15.8 2.1 1 1 4.6e-06 0.012 15.6 1.3 17 109 12 108 5 116 0.85 Pallilysin beta barrel domain DUF2178 PF09946.9 106 pNC_008790_00004 - 170 0.043 14.0 2.3 1 1 2.5e-05 0.064 13.4 2.3 4 94 6 98 3 104 0.85 Predicted membrane protein (DUF2178) DUF373 PF04123.13 335 pNC_008790_00004 - 170 0.062 12.7 2.8 1 1 2.7e-05 0.069 12.6 2.8 162 237 9 88 1 117 0.80 Domain of unknown function (DUF373) DHHC PF01529.20 134 pNC_008790_00004 - 170 0.65 10.1 7.6 1 2 0.97 2.5e+03 -1.5 0.1 96 112 5 21 2 26 0.53 DHHC palmitoyltransferase DHHC PF01529.20 134 pNC_008790_00004 - 170 0.65 10.1 7.6 2 2 0.00014 0.37 10.9 5.1 57 119 31 92 18 98 0.71 DHHC palmitoyltransferase Saf_2TM PF18303.1 152 pNC_008790_00004 - 170 0.72 9.4 5.1 1 2 0.00064 1.6 8.3 0.3 61 96 22 56 14 60 0.83 SAVED-fused 2TM effector domain Saf_2TM PF18303.1 152 pNC_008790_00004 - 170 0.72 9.4 5.1 2 2 0.018 46 3.6 0.6 24 62 63 101 56 106 0.84 SAVED-fused 2TM effector domain DUF4044 PF13253.6 33 pNC_008790_00005 - 185 0.034 13.7 0.8 1 1 1.7e-05 0.06 12.9 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pNC_008790_00005 - 185 0.061 13.1 0.1 1 1 2.4e-05 0.086 12.6 0.1 80 149 11 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction NPA PF16469.5 123 pNC_008790_00005 - 185 0.081 13.5 5.0 1 1 3.1e-05 0.11 13.1 5.0 13 103 93 183 83 185 0.86 Nematode polyprotein allergen ABA-1 DUF2070 PF09843.9 564 pNC_008790_00005 - 185 0.083 11.2 1.4 1 1 3.2e-05 0.12 10.7 1.4 126 214 23 108 10 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pNC_008790_00005 - 185 8.7 6.1 13.5 1 2 4e-05 0.14 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pNC_008790_00005 - 185 8.7 6.1 13.5 2 2 1.7 6e+03 -3.2 0.6 118 133 152 167 144 178 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pNC_008790_00006 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pNC_008790_00006 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) AAA_31 PF13614.6 177 pNC_008790_00007 - 186 4.7e-05 23.4 0.6 1 2 2.6e-07 0.00095 19.1 0.1 3 26 2 25 1 37 0.91 AAA domain AAA_31 PF13614.6 177 pNC_008790_00007 - 186 4.7e-05 23.4 0.6 2 2 0.029 1e+02 2.7 0.0 117 159 53 95 27 106 0.70 AAA domain CbiA PF01656.23 128 pNC_008790_00007 - 186 0.00045 20.3 0.8 1 1 1.3e-06 0.0046 17.0 0.8 1 100 3 129 3 164 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain adh_short PF00106.25 195 pNC_008790_00007 - 186 0.037 13.5 0.0 1 1 1.4e-05 0.05 13.1 0.0 17 109 69 171 61 178 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pNC_008790_00007 - 186 0.12 12.7 0.0 1 1 5.6e-05 0.2 11.9 0.0 21 78 84 138 70 147 0.81 Mur ligase family, glutamate ligase domain ParA PF10609.9 246 pNC_008790_00007 - 186 0.18 11.3 0.0 1 1 7.3e-05 0.26 10.7 0.0 5 29 2 26 1 36 0.89 NUBPL iron-transfer P-loop NTPase RHH_7 PF16777.5 74 pNC_008790_00008 - 88 4.5e-07 30.2 0.9 1 1 2.8e-11 5e-07 30.0 0.9 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG SNF2_N PF00176.23 350 pNC_008790_00009 - 1932 2.3e-16 59.5 1.6 1 3 1.2e-19 4.1e-16 58.6 0.1 56 245 1017 1273 935 1314 0.74 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pNC_008790_00009 - 1932 2.3e-16 59.5 1.6 2 3 0.85 3e+03 -3.4 0.0 245 282 1469 1511 1464 1526 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pNC_008790_00009 - 1932 2.3e-16 59.5 1.6 3 3 0.86 3.1e+03 -3.4 0.0 171 200 1878 1908 1857 1920 0.74 SNF2 family N-terminal domain ResIII PF04851.15 171 pNC_008790_00009 - 1932 4.9e-08 33.2 8.3 1 3 2.3 8.1e+03 -3.3 0.2 54 75 649 692 639 784 0.54 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pNC_008790_00009 - 1932 4.9e-08 33.2 8.3 2 3 1.4e-11 4.9e-08 33.2 8.3 2 148 1000 1212 999 1243 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pNC_008790_00009 - 1932 4.9e-08 33.2 8.3 3 3 0.38 1.4e+03 -0.8 5.6 36 121 1801 1904 1749 1929 0.61 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pNC_008790_00009 - 1932 9.9e-07 29.1 0.2 1 2 0.18 6.4e+02 0.7 0.0 45 73 1077 1105 1029 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pNC_008790_00009 - 1932 9.9e-07 29.1 0.2 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1511 1584 1467 1584 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pNC_008790_00009 - 1932 7.5e-06 25.8 1.6 1 2 3.4e-07 0.0012 18.6 0.4 2 108 1004 1109 1003 1205 0.57 DEAD/DEAH box helicase DEAD PF00270.29 176 pNC_008790_00009 - 1932 7.5e-06 25.8 1.6 2 2 0.11 4.1e+02 0.6 0.0 119 150 1883 1916 1828 1928 0.70 DEAD/DEAH box helicase Eco57I PF07669.11 106 pNC_008790_00009 - 1932 2.9e-05 24.5 0.7 1 2 8.8e-08 0.00032 21.2 0.2 3 103 372 472 370 475 0.77 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pNC_008790_00009 - 1932 2.9e-05 24.5 0.7 2 2 1.4 5.1e+03 -2.0 0.0 41 80 661 700 645 719 0.65 Eco57I restriction-modification methylase Acetyltransf_7 PF13508.7 76 pNC_008790_00010 - 234 0.00079 19.8 0.1 1 1 2.3e-07 0.0021 18.5 0.1 29 75 79 143 7 144 0.71 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pNC_008790_00010 - 234 0.032 14.4 0.1 1 1 7.3e-06 0.066 13.5 0.1 59 92 66 109 22 142 0.75 Acetyltransferase (GNAT) family Relaxase PF03432.14 242 pNC_008790_00011 - 462 1.9e-10 40.8 7.0 1 2 1e-14 1.9e-10 40.8 7.0 41 229 102 297 69 310 0.71 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pNC_008790_00011 - 462 1.9e-10 40.8 7.0 2 2 0.01 1.8e+02 1.6 4.8 137 183 348 394 317 428 0.72 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pNC_008790_00012 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pNC_008790_00012 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pNC_008790_00012 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pNC_008790_00012 - 183 0.052 13.7 2.0 1 1 2e-05 0.072 13.2 1.3 57 131 21 103 9 117 0.65 Stage III sporulation protein AB (spore_III_AB) U3_assoc_6 PF08640.11 83 pNC_008790_00012 - 183 0.29 11.3 8.6 1 3 0.27 9.8e+02 -0.1 0.1 40 55 12 27 4 57 0.71 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pNC_008790_00012 - 183 0.29 11.3 8.6 2 3 0.0064 23 5.2 0.8 10 46 55 91 50 97 0.88 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pNC_008790_00012 - 183 0.29 11.3 8.6 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 NLRC4_HD PF17889.1 107 pNC_008790_00012 - 183 0.29 11.5 5.9 1 2 0.00041 1.5 9.2 2.1 14 92 6 84 3 98 0.78 NLRC4 helical domain NLRC4_HD PF17889.1 107 pNC_008790_00012 - 183 0.29 11.5 5.9 2 2 0.016 57 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain DndE PF08870.11 112 pNC_008790_00012 - 183 0.35 11.1 5.8 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pNC_008790_00012 - 183 0.35 11.1 5.8 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE Sds3 PF08598.11 218 pNC_008790_00013 - 93 0.031 14.3 6.1 1 1 6e-06 0.036 14.1 6.1 45 97 7 62 5 87 0.82 Sds3-like CdvA PF18822.1 123 pNC_008790_00013 - 93 0.22 11.3 8.9 1 2 4.1e-05 0.25 11.2 6.0 18 49 6 37 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pNC_008790_00013 - 93 0.22 11.3 8.9 2 2 0.057 3.4e+02 1.0 0.0 97 112 60 75 45 89 0.68 CdvA-like coiled-coil domain ESP PF16590.5 91 pNC_008790_00013 - 93 0.52 10.6 5.3 1 2 0.023 1.4e+02 2.8 0.8 26 72 3 46 2 51 0.67 Exocrine gland-secreting peptide ESP PF16590.5 91 pNC_008790_00013 - 93 0.52 10.6 5.3 2 2 4.6e-05 0.28 11.5 0.6 26 58 43 78 42 91 0.78 Exocrine gland-secreting peptide DUF2400 PF09674.10 227 pNC_008790_00015 - 217 0.18 11.8 5.5 1 2 0.0077 1.4e+02 2.3 0.1 38 73 49 84 42 96 0.80 Protein of unknown function (DUF2400) DUF2400 PF09674.10 227 pNC_008790_00015 - 217 0.18 11.8 5.5 2 2 2.1e-05 0.38 10.7 1.5 24 119 95 190 92 212 0.77 Protein of unknown function (DUF2400) Toprim_3 PF13362.6 95 pNC_008790_00016 - 408 2.4e-08 34.2 0.0 1 1 1.1e-11 4.8e-08 33.3 0.0 3 94 270 375 268 376 0.86 Toprim domain Paz_1 PF18349.1 93 pNC_008790_00016 - 408 0.082 12.9 0.3 1 1 8.2e-05 0.37 10.8 0.3 52 81 138 167 114 171 0.79 PAZ domain Toprim_4 PF13662.6 89 pNC_008790_00016 - 408 0.14 12.7 0.1 1 1 6.6e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.83 Toprim domain 5_3_exonuc PF01367.20 97 pNC_008790_00016 - 408 0.17 12.5 4.7 1 2 0.026 1.2e+02 3.4 0.4 54 87 143 174 121 203 0.68 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pNC_008790_00016 - 408 0.17 12.5 4.7 2 2 0.00019 0.87 10.2 0.4 15 79 321 381 319 405 0.64 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pNC_008790_00017 - 87 0.0072 16.3 0.2 1 2 6.7e-07 0.012 15.6 0.0 1 21 1 22 1 38 0.89 Protein of unknown function (DUF4223) DUF4223 PF13978.6 54 pNC_008790_00017 - 87 0.0072 16.3 0.2 2 2 0.73 1.3e+04 -3.8 0.0 25 32 41 48 39 49 0.71 Protein of unknown function (DUF4223) UBA_6 PF18039.1 42 pNC_008790_00018 - 32 0.02 14.8 0.1 1 1 4.4e-06 0.02 14.8 0.1 4 28 2 26 1 32 0.92 UBA-like domain DUF3606 PF12244.8 54 pNC_008790_00018 - 32 0.034 14.1 0.0 1 1 7.6e-06 0.034 14.1 0.0 26 45 7 26 4 31 0.88 Protein of unknown function (DUF3606) ZapB PF06005.12 71 pNC_008790_00018 - 32 0.051 14.0 0.0 1 1 1.1e-05 0.051 14.0 0.0 1 22 1 22 1 32 0.93 Cell division protein ZapB Lig_C PF18330.1 125 pNC_008790_00018 - 32 0.097 12.7 0.0 1 1 2.2e-05 0.098 12.7 0.0 38 65 5 31 2 32 0.91 Ligase Pab1020 C-terminal region Sdh_cyt PF01127.22 121 pNC_008790_00019 - 85 0.0064 16.5 2.3 1 1 1.4e-06 0.0084 16.1 2.3 34 88 20 76 18 79 0.83 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2TM PF13239.6 76 pNC_008790_00019 - 85 0.36 11.2 4.1 1 1 8.1e-05 0.49 10.7 4.1 6 54 12 73 10 84 0.68 2TM domain DUF2633 PF11119.8 57 pNC_008790_00019 - 85 0.93 9.4 4.2 1 1 0.00029 1.7 8.6 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pNC_008790_00021 - 72 1.7e-08 34.6 0.0 1 1 9.8e-13 1.8e-08 34.6 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pNC_008790_00022 - 67 6.7e-10 38.9 0.3 1 1 4.6e-14 8.2e-10 38.6 0.3 2 54 10 60 9 64 0.89 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pNC_008790_00023 - 597 1.9e-14 53.7 0.0 1 1 2.3e-17 5.8e-14 52.1 0.0 30 193 30 175 23 176 0.85 AAA domain DnaB_C PF03796.15 255 pNC_008790_00023 - 597 0.00072 19.0 0.0 1 2 1.7e-06 0.0045 16.4 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pNC_008790_00023 - 597 0.00072 19.0 0.0 2 2 0.013 32 3.7 0.0 122 183 113 176 96 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pNC_008790_00023 - 597 0.0033 17.2 0.0 1 2 8.8e-06 0.023 14.5 0.0 46 85 32 71 22 89 0.89 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pNC_008790_00023 - 597 0.0033 17.2 0.0 2 2 0.52 1.3e+03 -1.1 0.0 99 118 111 130 102 168 0.68 IstB-like ATP binding protein AAA PF00004.29 132 pNC_008790_00023 - 597 0.014 15.9 0.1 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pNC_008790_00023 - 597 0.014 15.9 0.1 2 2 0.17 4.3e+02 1.3 0.0 47 74 411 434 376 459 0.69 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 231 pNC_008790_00023 - 597 0.028 13.7 0.0 1 2 7.9e-05 0.2 10.9 0.0 16 70 30 83 23 168 0.91 KaiC ATPase PF06745.13 231 pNC_008790_00023 - 597 0.028 13.7 0.0 2 2 0.43 1.1e+03 -1.3 0.0 134 160 326 352 316 358 0.82 KaiC CbiA PF01656.23 128 pNC_008790_00023 - 597 0.2 11.7 2.1 1 1 0.0003 0.77 9.8 1.9 1 29 35 63 35 471 0.85 CobQ/CobB/MinD/ParA nucleotide binding domain VASP_tetra PF08776.11 37 pNC_008790_00023 - 597 3.9 7.1 6.1 1 2 0.0052 13 5.4 0.1 16 35 97 116 94 118 0.90 VASP tetramerisation domain VASP_tetra PF08776.11 37 pNC_008790_00023 - 597 3.9 7.1 6.1 2 2 0.034 86 2.8 2.0 16 28 517 529 511 531 0.90 VASP tetramerisation domain Resolvase PF00239.21 146 pNC_008790_00024 - 204 3.3e-33 114.8 0.7 1 1 1e-36 4.5e-33 114.4 0.7 2 146 3 145 2 145 0.95 Resolvase, N terminal domain HTH_38 PF13936.6 44 pNC_008790_00024 - 204 0.022 14.5 0.7 1 3 1.2 5.3e+03 -2.7 0.0 8 19 47 58 46 60 0.81 Helix-turn-helix domain HTH_38 PF13936.6 44 pNC_008790_00024 - 204 0.022 14.5 0.7 2 3 0.00059 2.6 7.9 0.1 2 35 117 151 117 154 0.90 Helix-turn-helix domain HTH_38 PF13936.6 44 pNC_008790_00024 - 204 0.022 14.5 0.7 3 3 0.0098 44 3.9 0.0 11 26 162 177 158 185 0.84 Helix-turn-helix domain HTH_Mga PF08280.11 60 pNC_008790_00024 - 204 0.039 14.0 4.6 1 3 9.2e-05 0.41 10.7 0.7 25 59 10 44 2 45 0.84 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pNC_008790_00024 - 204 0.039 14.0 4.6 2 3 1.3 5.7e+03 -2.6 0.0 8 16 78 86 72 90 0.74 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pNC_008790_00024 - 204 0.039 14.0 4.6 3 3 0.013 58 3.8 0.1 39 56 159 176 158 177 0.92 M protein trans-acting positive regulator (MGA) HTH domain Pox_A_type_inc PF04508.12 23 pNC_008790_00024 - 204 0.16 11.9 0.7 1 3 0.78 3.5e+03 -1.9 0.2 1 12 13 24 13 24 0.76 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pNC_008790_00024 - 204 0.16 11.9 0.7 2 3 3.6e-05 0.16 11.9 0.7 4 17 46 59 46 61 0.91 Viral A-type inclusion protein repeat Pox_A_type_inc PF04508.12 23 pNC_008790_00024 - 204 0.16 11.9 0.7 3 3 2.2 9.7e+03 -3.2 0.0 1 6 68 73 68 73 0.82 Viral A-type inclusion protein repeat CRISPR_Cas2 PF09827.9 76 pNC_008790_00025 - 125 0.00034 20.7 0.1 1 2 9.5e-08 0.00085 19.5 0.0 5 55 8 69 4 89 0.84 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pNC_008790_00025 - 125 0.00034 20.7 0.1 2 2 0.024 2.2e+02 2.1 0.1 12 41 55 83 53 118 0.68 CRISPR associated protein Cas2 Mitovir_RNA_pol PF05919.11 498 pNC_008790_00025 - 125 0.046 12.9 0.5 1 1 6.4e-06 0.057 12.6 0.5 317 429 9 119 4 124 0.83 Mitovirus RNA-dependent RNA polymerase TrbC PF04956.13 99 pNC_008790_00027 - 87 3.5e-13 49.6 6.7 1 1 4.5e-17 4e-13 49.4 6.7 20 99 6 85 4 85 0.97 TrbC/VIRB2 family DUF2062 PF09835.9 148 pNC_008790_00027 - 87 0.17 11.8 4.4 1 1 2.6e-05 0.23 11.3 4.4 78 135 37 87 9 87 0.70 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pNC_008790_00028 - 922 4.9e-50 170.5 0.5 1 1 1.9e-53 1.2e-49 169.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pNC_008790_00028 - 922 7.3e-21 74.2 1.2 1 1 2.1e-24 1.3e-20 73.4 1.2 2 83 3 84 2 85 0.94 Type IV secretory pathway, VirB3-like protein HNOBA PF07701.14 221 pNC_008790_00028 - 922 0.048 13.1 0.1 1 1 1.6e-05 0.098 12.1 0.1 53 153 624 844 622 852 0.85 Heme NO binding associated Phage_pRha PF09669.10 88 pNC_008790_00029 - 188 2e-29 102.0 0.1 1 1 1.9e-33 3.3e-29 101.3 0.1 2 88 24 122 23 122 0.83 Phage regulatory protein Rha (Phage_pRha) DUF3251 PF11622.8 165 pNC_008790_00030 - 221 0.079 12.6 0.1 1 1 6.3e-05 0.19 11.4 0.1 7 66 10 72 6 77 0.65 Protein of unknown function (DUF3251) FapA PF03961.13 454 pNC_008790_00030 - 221 0.11 11.0 14.1 1 2 4.6e-06 0.014 14.0 8.8 332 412 3 89 1 157 0.83 Flagellar Assembly Protein A FapA PF03961.13 454 pNC_008790_00030 - 221 0.11 11.0 14.1 2 2 0.094 2.8e+02 -0.1 1.4 297 359 143 207 107 221 0.51 Flagellar Assembly Protein A Fib_alpha PF08702.10 143 pNC_008790_00030 - 221 1 9.6 11.7 1 3 2.1e-05 0.062 13.5 3.7 30 97 3 67 1 98 0.82 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pNC_008790_00030 - 221 1 9.6 11.7 2 3 0.36 1.1e+03 -0.2 0.0 110 126 136 152 111 165 0.64 Fibrinogen alpha/beta chain family Fib_alpha PF08702.10 143 pNC_008790_00030 - 221 1 9.6 11.7 3 3 0.39 1.2e+03 -0.4 0.3 35 52 192 209 176 220 0.45 Fibrinogen alpha/beta chain family Ax_dynein_light PF10211.9 187 pNC_008790_00030 - 221 1.7 8.6 14.4 1 3 1.7e-05 0.051 13.5 3.7 121 183 3 65 1 69 0.91 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pNC_008790_00030 - 221 1.7 8.6 14.4 2 3 0.28 8.4e+02 -0.2 0.1 111 133 134 156 112 168 0.55 Axonemal dynein light chain Ax_dynein_light PF10211.9 187 pNC_008790_00030 - 221 1.7 8.6 14.4 3 3 0.088 2.6e+02 1.4 0.5 109 141 177 214 171 221 0.56 Axonemal dynein light chain DUF5082 PF16888.5 123 pNC_008790_00030 - 221 3.6 7.9 14.4 1 2 0.001 3 8.1 3.5 2 30 7 35 4 86 0.61 Domain of unknown function (DUF5082) DUF5082 PF16888.5 123 pNC_008790_00030 - 221 3.6 7.9 14.4 2 2 0.01 30 4.9 3.2 19 98 137 220 134 221 0.84 Domain of unknown function (DUF5082) DUF465 PF04325.13 47 pNC_008790_00030 - 221 4.6 7.4 9.4 1 3 0.0043 13 5.9 2.5 10 41 5 36 4 54 0.86 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pNC_008790_00030 - 221 4.6 7.4 9.4 2 3 0.98 2.9e+03 -1.6 0.0 12 23 78 89 75 99 0.74 Protein of unknown function (DUF465) DUF465 PF04325.13 47 pNC_008790_00030 - 221 4.6 7.4 9.4 3 3 0.0092 27 4.9 0.3 6 25 135 155 134 160 0.82 Protein of unknown function (DUF465) SSB PF00436.25 104 pNC_008790_00031 - 141 2.8e-25 88.3 0.1 1 1 2e-29 3.6e-25 88.0 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pNC_008790_00032 - 91 0.00046 19.9 6.9 1 2 5.3e-08 0.00048 19.9 2.0 3 50 5 50 4 52 0.93 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pNC_008790_00032 - 91 0.00046 19.9 6.9 2 2 0.014 1.3e+02 2.5 0.2 31 52 57 78 56 80 0.82 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pNC_008790_00032 - 91 0.0053 17.3 1.0 1 1 6.9e-07 0.0062 17.1 1.0 21 87 9 81 1 85 0.90 FliG N-terminal domain T4SS PF07996.11 197 pNC_008790_00033 - 323 7.9e-29 101.5 13.4 1 1 4e-32 1e-28 101.1 13.4 1 194 94 298 94 301 0.92 Type IV secretion system proteins DUF3045 PF11243.8 88 pNC_008790_00033 - 323 0.0081 16.3 0.6 1 2 0.99 2.5e+03 -1.3 0.0 30 53 134 157 122 165 0.71 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pNC_008790_00033 - 323 0.0081 16.3 0.6 2 2 1.2e-05 0.03 14.5 0.1 18 82 195 259 186 263 0.91 Protein of unknown function (DUF3045) AATF-Che1 PF13339.6 139 pNC_008790_00033 - 323 0.014 16.1 5.0 1 2 0.046 1.2e+02 3.4 0.4 94 135 106 145 42 182 0.64 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pNC_008790_00033 - 323 0.014 16.1 5.0 2 2 5.3e-06 0.014 16.1 5.0 49 128 225 318 205 322 0.77 Apoptosis antagonizing transcription factor VWA_2 PF13519.6 107 pNC_008790_00033 - 323 0.043 14.5 0.8 1 2 2.2 5.6e+03 -2.0 0.0 54 71 123 140 101 164 0.60 von Willebrand factor type A domain VWA_2 PF13519.6 107 pNC_008790_00033 - 323 0.043 14.5 0.8 2 2 1.7e-05 0.043 14.5 0.8 32 84 209 270 202 296 0.83 von Willebrand factor type A domain KNOX2 PF03791.13 48 pNC_008790_00033 - 323 0.07 12.6 0.2 1 2 0.016 41 3.8 0.0 14 42 130 160 128 165 0.79 KNOX2 domain KNOX2 PF03791.13 48 pNC_008790_00033 - 323 0.07 12.6 0.2 2 2 0.0028 7.2 6.2 0.1 19 39 301 321 299 323 0.90 KNOX2 domain THOC7 PF05615.13 132 pNC_008790_00033 - 323 1.2 9.4 11.3 1 2 0.00061 1.6 9.0 0.2 57 107 101 151 97 182 0.92 Tho complex subunit 7 THOC7 PF05615.13 132 pNC_008790_00033 - 323 1.2 9.4 11.3 2 2 0.17 4.4e+02 1.1 6.3 16 71 231 294 202 315 0.50 Tho complex subunit 7 Allexi_40kDa PF05549.11 271 pNC_008790_00033 - 323 3.5 7.1 7.2 1 2 0.19 4.9e+02 0.0 0.1 95 122 112 137 37 189 0.55 Allexivirus 40kDa protein Allexi_40kDa PF05549.11 271 pNC_008790_00033 - 323 3.5 7.1 7.2 2 2 0.00046 1.2 8.6 3.3 61 157 212 306 190 322 0.56 Allexivirus 40kDa protein TrbL PF04610.14 215 pNC_008790_00034 - 332 3.2e-31 108.8 32.1 1 2 5.3e-35 3.2e-31 108.8 32.1 1 214 40 252 40 253 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pNC_008790_00034 - 332 3.2e-31 108.8 32.1 2 2 0.17 1e+03 -0.7 0.1 56 91 284 329 263 332 0.60 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pNC_008790_00034 - 332 0.18 11.7 1.6 1 2 0.078 4.7e+02 0.7 0.2 33 66 64 104 60 118 0.60 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pNC_008790_00034 - 332 0.18 11.7 1.6 2 2 0.00018 1 9.2 0.1 28 81 238 288 209 300 0.74 T-cell leukemia translocation-altered AIM3 PF17096.5 88 pNC_008790_00034 - 332 1.6 9.7 5.2 1 1 0.00045 2.7 9.0 5.2 8 38 299 329 292 331 0.87 Altered inheritance of mitochondria protein 3 Trep_dent_lipo PF09710.10 397 pNC_008790_00035 - 55 0.016 14.1 0.0 1 1 1.8e-06 0.016 14.1 0.0 3 25 3 24 1 54 0.81 Treponema clustered lipoprotein (Trep_dent_lipo) PsbT PF01405.17 29 pNC_008790_00035 - 55 1.1 9.1 5.2 1 1 0.00019 1.7 8.5 5.2 8 20 5 17 5 18 0.95 Photosystem II reaction centre T protein VirB8 PF04335.13 214 pNC_008790_00036 - 220 2e-52 178.1 0.5 1 1 2.5e-56 2.2e-52 178.0 0.5 5 214 11 217 7 217 0.92 VirB8 protein OppC_N PF12911.7 51 pNC_008790_00036 - 220 0.012 15.6 0.7 1 1 2.7e-06 0.025 14.6 0.7 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pNC_008790_00037 - 295 3.2e-55 187.1 1.3 1 1 5.9e-59 5.3e-55 186.4 1.3 2 211 29 270 28 270 0.92 Conjugal transfer protein DUF4354 PF14263.6 125 pNC_008790_00037 - 295 0.086 12.7 0.3 1 2 2.4e-05 0.22 11.4 0.0 1 50 1 50 1 61 0.95 Domain of unknown function (DUF4354) DUF4354 PF14263.6 125 pNC_008790_00037 - 295 0.086 12.7 0.3 2 2 1 9.1e+03 -3.6 0.1 50 62 130 142 124 150 0.67 Domain of unknown function (DUF4354) TrbI PF03743.14 187 pNC_008790_00038 - 391 3.4e-48 164.0 0.1 1 1 6e-52 5.4e-48 163.3 0.1 1 187 194 375 194 375 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pNC_008790_00038 - 391 0.028 13.5 0.1 1 1 4.9e-06 0.044 12.9 0.1 31 81 322 372 305 377 0.89 HaeIII restriction endonuclease T2SSE PF00437.20 273 pNC_008790_00039 - 330 6.3e-54 182.9 0.0 1 1 1.3e-56 7.3e-54 182.7 0.0 6 270 14 312 9 315 0.93 Type II/IV secretion system protein ABC_tran PF00005.27 137 pNC_008790_00039 - 330 6e-05 23.6 0.0 1 1 2.1e-07 0.00012 22.6 0.0 4 50 153 200 151 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pNC_008790_00039 - 330 0.00016 21.2 0.0 1 1 4.2e-07 0.00025 20.5 0.0 37 60 158 181 138 186 0.83 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pNC_008790_00039 - 330 0.00021 20.8 0.0 1 1 6.5e-07 0.00037 20.0 0.0 11 57 138 184 129 195 0.84 P-loop containing dynein motor region AAA_22 PF13401.6 137 pNC_008790_00039 - 330 0.0014 18.9 0.0 1 1 4.4e-06 0.0025 18.1 0.0 5 56 160 221 155 242 0.71 AAA domain AAA_24 PF13479.6 197 pNC_008790_00039 - 330 0.0026 17.5 0.0 1 1 9e-06 0.0052 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain DEAD PF00270.29 176 pNC_008790_00039 - 330 0.003 17.3 0.0 1 1 8.1e-06 0.0047 16.7 0.0 2 36 148 181 147 247 0.80 DEAD/DEAH box helicase TsaE PF02367.17 125 pNC_008790_00039 - 330 0.0036 17.3 0.0 1 1 1.2e-05 0.0072 16.3 0.0 14 45 153 186 140 194 0.76 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pNC_008790_00039 - 330 0.0048 15.9 0.0 1 1 1.2e-05 0.0071 15.3 0.0 21 65 160 202 149 235 0.74 AAA-like domain NACHT PF05729.12 166 pNC_008790_00039 - 330 0.0072 16.3 0.0 1 1 2.1e-05 0.012 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pNC_008790_00039 - 330 0.0086 15.4 0.0 1 1 2.4e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pNC_008790_00039 - 330 0.0087 16.0 0.0 1 1 2e-05 0.012 15.6 0.0 23 82 163 226 151 304 0.85 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 168 pNC_008790_00039 - 330 0.018 14.8 0.0 1 1 6.2e-05 0.036 13.8 0.0 11 44 149 182 142 199 0.84 Sigma-54 interaction domain ResIII PF04851.15 171 pNC_008790_00039 - 330 0.019 15.0 0.0 1 1 7e-05 0.041 13.9 0.0 10 50 147 186 130 243 0.73 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 386 pNC_008790_00039 - 330 0.021 13.7 0.0 1 1 5.8e-05 0.033 13.1 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 227 pNC_008790_00039 - 330 0.023 14.8 0.1 1 1 7.9e-05 0.046 13.8 0.1 28 48 165 185 155 193 0.84 Helicase HerA, central domain AAA_29 PF13555.6 61 pNC_008790_00039 - 330 0.024 14.4 0.0 1 1 9.1e-05 0.053 13.3 0.0 23 39 160 177 141 184 0.78 P-loop containing region of AAA domain AAA_14 PF13173.6 131 pNC_008790_00039 - 330 0.032 14.3 0.1 1 1 0.00018 0.1 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain Pox_A32 PF04665.12 242 pNC_008790_00039 - 330 0.035 13.6 0.0 1 1 9.6e-05 0.056 12.9 0.0 15 37 162 184 150 213 0.87 Poxvirus A32 protein RNA_helicase PF00910.22 107 pNC_008790_00039 - 330 0.036 14.4 0.0 1 1 0.00018 0.1 13.0 0.0 1 23 163 185 163 224 0.79 RNA helicase ATP_bind_1 PF03029.17 241 pNC_008790_00039 - 330 0.037 13.8 0.0 1 1 0.00011 0.062 13.1 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 199 pNC_008790_00039 - 330 0.039 13.2 0.0 1 1 0.00012 0.067 12.5 0.0 14 49 158 193 145 208 0.83 Zeta toxin PRK PF00485.18 197 pNC_008790_00039 - 330 0.051 13.3 0.0 1 1 0.00018 0.11 12.3 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pNC_008790_00039 - 330 0.063 11.9 0.0 1 1 0.00015 0.085 11.5 0.0 8 43 158 193 150 261 0.73 GvpD gas vesicle protein AAA_16 PF13191.6 170 pNC_008790_00039 - 330 0.064 13.6 0.0 1 1 0.00017 0.099 13.0 0.0 21 55 158 192 144 289 0.79 AAA ATPase domain Microtub_bd PF16796.5 149 pNC_008790_00039 - 330 0.084 12.8 0.3 1 1 0.00038 0.22 11.4 0.3 71 102 149 179 130 205 0.79 Microtubule binding MobB PF03205.14 133 pNC_008790_00039 - 330 0.088 12.7 0.0 1 1 0.00034 0.2 11.6 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 168 pNC_008790_00039 - 330 0.11 12.3 0.1 1 1 0.00039 0.23 11.4 0.1 1 24 162 185 162 193 0.87 NTPase cobW PF02492.19 177 pNC_008790_00039 - 330 0.15 11.7 0.0 1 1 0.0004 0.23 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pNC_008790_00039 - 330 0.2 11.4 0.0 1 1 0.00053 0.31 10.7 0.0 11 41 154 183 146 193 0.77 AAA domain AAA_23 PF13476.6 200 pNC_008790_00039 - 330 0.3 11.6 3.1 1 2 4.9 2.8e+03 -1.4 0.0 101 102 122 123 46 161 0.53 AAA domain AAA_23 PF13476.6 200 pNC_008790_00039 - 330 0.3 11.6 3.1 2 2 0.00054 0.31 11.5 1.4 22 37 163 178 151 184 0.87 AAA domain T4SS-DNA_transf PF02534.14 469 pNC_008790_00040 - 603 1e-104 351.0 0.1 1 1 3.4e-108 1.5e-104 350.4 0.1 2 461 93 565 82 571 0.84 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pNC_008790_00040 - 603 9.3e-25 87.0 0.0 1 1 4.6e-28 2.1e-24 85.9 0.0 2 125 406 528 405 529 0.90 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pNC_008790_00040 - 603 1.9e-14 53.4 0.0 1 2 4.4e-05 0.2 10.6 0.0 45 145 153 265 125 294 0.72 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pNC_008790_00040 - 603 1.9e-14 53.4 0.0 2 2 2.9e-14 1.3e-10 40.8 0.0 187 370 347 532 308 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Yos9_DD PF17880.1 128 pNC_008790_00040 - 603 0.047 13.8 0.1 1 1 2.4e-05 0.11 12.6 0.1 2 60 165 226 164 234 0.74 Yos9 dimerzation domain Cag12 PF13117.6 97 pNC_008790_00041 - 145 4.8e-17 62.3 0.3 1 1 1.3e-20 6e-17 61.9 0.3 6 97 32 123 27 123 0.91 Cag pathogenicity island protein Cag12 ERCC4 PF02732.15 156 pNC_008790_00041 - 145 0.052 13.7 0.1 1 1 1.5e-05 0.068 13.4 0.1 25 105 34 114 21 140 0.76 ERCC4 domain DUF2689 PF10894.8 57 pNC_008790_00041 - 145 0.075 12.8 0.3 1 1 4.8e-05 0.22 11.3 0.3 10 40 65 102 59 112 0.76 Protein of unknown function (DUF2689) DUF2706 PF10913.8 59 pNC_008790_00041 - 145 3.8 7.4 6.0 1 2 0.001 4.5 7.2 2.7 36 49 29 42 2 46 0.88 Protein of unknown function (DUF2706) DUF2706 PF10913.8 59 pNC_008790_00041 - 145 3.8 7.4 6.0 2 2 0.21 9.4e+02 -0.2 0.1 45 58 125 137 121 138 0.81 Protein of unknown function (DUF2706) TrbM PF07424.11 156 pNC_008790_00042 - 254 1.3e-35 122.6 1.7 1 1 1e-39 1.8e-35 122.2 1.7 1 154 24 192 24 194 0.87 TrbM PRELI PF04707.14 157 pNC_008790_00043 - 265 0.038 13.8 0.4 1 2 0.93 5.5e+03 -3.0 0.1 129 154 22 47 16 49 0.67 PRELI-like family PRELI PF04707.14 157 pNC_008790_00043 - 265 0.038 13.8 0.4 2 2 6.3e-06 0.038 13.8 0.4 96 155 83 147 69 149 0.85 PRELI-like family Prismane PF03063.20 511 pNC_008790_00043 - 265 0.089 11.5 0.1 1 1 2e-05 0.12 11.0 0.1 75 191 93 215 79 230 0.72 Prismane/CO dehydrogenase family Rsd_AlgQ PF04353.13 150 pNC_008790_00043 - 265 0.93 9.4 6.6 1 3 0.33 2e+03 -1.3 0.1 110 135 18 43 3 67 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pNC_008790_00043 - 265 0.93 9.4 6.6 2 3 4.4e-05 0.26 11.2 2.1 42 108 120 185 84 189 0.82 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353.13 150 pNC_008790_00043 - 265 0.93 9.4 6.6 3 3 1.4 8.1e+03 -3.3 0.0 119 135 209 225 204 233 0.67 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Redoxin PF08534.10 147 pNC_008790_00045 - 206 0.054 13.2 0.9 1 2 0.029 5.3e+02 0.3 0.1 119 146 11 36 4 37 0.81 Redoxin Redoxin PF08534.10 147 pNC_008790_00045 - 206 0.054 13.2 0.9 2 2 1.9e-05 0.34 10.6 0.1 49 72 144 168 137 190 0.81 Redoxin Topoisom_bac PF01131.20 413 pNC_008790_00046 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pNC_008790_00046 - 730 5.6e-12 45.8 2.3 1 2 9.8e-15 1e-11 44.9 0.0 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pNC_008790_00046 - 730 5.6e-12 45.8 2.3 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pNC_008790_00046 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pNC_008790_00046 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pNC_008790_00046 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pNC_008790_00046 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pNC_008790_00046 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pNC_008790_00046 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pNC_008790_00046 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pNC_008790_00046 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pNC_008790_00046 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pNC_008790_00046 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pNC_008790_00046 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pNC_008790_00046 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pNC_008790_00046 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pNC_008790_00046 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pNC_008790_00046 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pNC_008790_00046 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pNC_008790_00046 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pNC_008790_00046 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pNC_008790_00046 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pNC_008790_00046 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pNC_008790_00046 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pNC_008790_00046 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pNC_008790_00046 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pNC_008790_00046 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pNC_008790_00046 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pNC_008790_00046 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pNC_008790_00046 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pNC_008790_00046 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pNC_008790_00046 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pNC_008790_00046 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pNC_008790_00046 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pNC_008790_00047 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pNC_008790_00047 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain GTP_EFTU PF00009.27 194 pNC_008790_00049 - 639 5.4e-59 199.0 0.3 1 1 4.2e-62 7.6e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pNC_008790_00049 - 639 3.5e-23 81.7 0.0 1 2 4.1 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pNC_008790_00049 - 639 3.5e-23 81.7 0.0 2 2 5.4e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pNC_008790_00049 - 639 9.4e-17 60.8 0.0 1 1 1.3e-19 2.4e-16 59.6 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pNC_008790_00049 - 639 1.3e-12 47.6 0.1 1 1 1.7e-15 3e-12 46.5 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pNC_008790_00049 - 639 1.9e-06 28.0 0.1 1 1 2.6e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pNC_008790_00049 - 639 0.00029 21.1 0.0 1 1 4e-07 0.00072 19.9 0.0 4 58 266 314 264 318 0.85 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pNC_008790_00049 - 639 0.018 14.9 0.0 1 1 2.1e-05 0.037 13.8 0.0 44 82 379 417 344 434 0.78 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pNC_008790_00049 - 639 0.021 14.1 0.1 1 1 2.1e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pNC_008790_00049 - 639 0.047 13.0 0.0 1 1 6.6e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family FeoB_N PF02421.18 156 pNC_008790_00049 - 639 0.16 11.5 0.2 1 1 0.00036 0.65 9.5 0.2 32 117 53 132 44 161 0.69 Ferrous iron transport protein B DUF5442 PF17514.2 107 pNC_008790_00050 - 220 0.075 13.2 0.4 1 2 7.7e-06 0.14 12.4 0.0 31 59 22 50 3 65 0.84 Family of unknown function (DUF5442) DUF5442 PF17514.2 107 pNC_008790_00050 - 220 0.075 13.2 0.4 2 2 0.38 6.8e+03 -2.7 0.1 73 83 98 108 78 120 0.61 Family of unknown function (DUF5442) W2 PF02020.18 79 pNC_022355_00001 - 382 0.04 14.0 0.0 1 1 1.2e-05 0.11 12.7 0.0 38 77 296 356 292 358 0.86 eIF4-gamma/eIF5/eIF2-epsilon VirE_N PF08800.10 134 pNC_022355_00001 - 382 0.063 13.4 0.0 1 2 1.6e-05 0.14 12.2 0.0 14 78 100 163 94 183 0.82 VirE N-terminal domain VirE_N PF08800.10 134 pNC_022355_00001 - 382 0.063 13.4 0.0 2 2 1.4 1.2e+04 -3.7 0.0 77 100 253 275 250 276 0.71 VirE N-terminal domain Lip_prot_lig_C PF10437.9 85 pNC_022355_00002 - 126 0.047 13.7 4.2 1 2 0.011 96 3.1 0.1 48 76 9 37 3 53 0.56 Bacterial lipoate protein ligase C-terminus Lip_prot_lig_C PF10437.9 85 pNC_022355_00002 - 126 0.047 13.7 4.2 2 2 3.7e-05 0.33 11.0 2.2 3 83 40 123 38 124 0.75 Bacterial lipoate protein ligase C-terminus CtsR_C PF17727.1 72 pNC_022355_00002 - 126 0.048 13.8 0.1 1 2 0.00057 5.1 7.3 0.0 3 37 31 65 28 72 0.85 CtsR C-terminal dimerization domain CtsR_C PF17727.1 72 pNC_022355_00002 - 126 0.048 13.8 0.1 2 2 0.005 45 4.3 0.0 28 48 74 94 73 109 0.85 CtsR C-terminal dimerization domain DHHC PF01529.20 134 pNC_022355_00004 - 107 4.1 7.5 13.1 1 1 0.0014 13 5.9 13.1 29 78 15 64 9 105 0.49 DHHC palmitoyltransferase DUF4133 PF13571.6 91 pNC_022355_00004 - 107 5.6 7.4 7.4 1 1 0.00084 7.5 7.0 6.7 19 65 34 80 30 92 0.77 Domain of unknown function (DUF4133) DHHC PF01529.20 134 pNC_022355_00006 - 89 0.033 14.3 6.3 1 1 4.4e-06 0.039 14.0 6.3 53 119 2 67 1 74 0.81 DHHC palmitoyltransferase T4SS_CagC PF16943.5 107 pNC_022355_00006 - 89 0.046 13.9 0.2 1 1 6.2e-06 0.056 13.6 0.2 45 99 2 56 1 65 0.72 Cag pathogenicity island, type IV secretory system DUF4044 PF13253.6 33 pNC_022355_00008 - 189 0.035 13.6 0.8 1 1 1.4e-05 0.062 12.8 0.8 10 32 18 40 16 41 0.88 Protein of unknown function (DUF4044) Claudin_2 PF13903.6 193 pNC_022355_00008 - 189 0.065 13.0 0.1 1 1 2e-05 0.091 12.5 0.1 81 149 12 80 6 100 0.81 PMP-22/EMP/MP20/Claudin tight junction DUF2070 PF09843.9 564 pNC_022355_00008 - 189 0.072 11.4 1.1 1 1 2.4e-05 0.11 10.8 1.1 127 214 24 108 11 115 0.79 Predicted membrane protein (DUF2070) DUF443 PF04276.12 203 pNC_022355_00008 - 189 9.1 6.0 13.6 1 2 3.3e-05 0.15 11.9 6.6 127 198 6 77 1 81 0.78 Protein of unknown function (DUF443) DUF443 PF04276.12 203 pNC_022355_00008 - 189 9.1 6.0 13.6 2 2 1.3 5.9e+03 -3.2 0.6 118 133 152 167 144 179 0.48 Protein of unknown function (DUF443) Papo_T_antigen PF02380.15 93 pNC_022355_00009 - 88 0.00045 20.3 1.7 1 1 6.3e-08 0.00056 20.0 1.7 51 74 44 66 25 83 0.87 T-antigen specific domain DUF1272 PF06906.11 57 pNC_022355_00009 - 88 0.013 15.5 4.2 1 1 2.6e-06 0.023 14.8 4.2 8 39 29 58 26 65 0.89 Protein of unknown function (DUF1272) adh_short PF00106.25 195 pNC_022355_00010 - 177 0.034 13.6 0.0 1 1 4.8e-06 0.043 13.3 0.0 17 109 60 162 52 170 0.77 short chain dehydrogenase Mur_ligase_C PF02875.21 91 pNC_022355_00010 - 177 0.1 12.9 0.0 1 1 2e-05 0.18 12.1 0.0 21 78 75 129 61 138 0.81 Mur ligase family, glutamate ligase domain RHH_7 PF16777.5 74 pNC_022355_00011 - 88 2.1e-07 31.2 1.1 1 1 2.6e-11 2.4e-07 31.1 1.1 4 69 15 81 1 85 0.85 Transcriptional regulator, RHH-like, CopG BtrH_N PF14399.6 134 pNC_022355_00011 - 88 0.099 12.9 0.0 1 1 1.2e-05 0.11 12.7 0.0 50 110 3 63 1 70 0.89 Butirosin biosynthesis protein H, N-terminal SNF2_N PF00176.23 350 pNC_022355_00012 - 1931 3.7e-16 58.8 2.9 1 3 1.3e-19 4.5e-16 58.5 0.1 57 245 1017 1272 935 1313 0.75 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pNC_022355_00012 - 1931 3.7e-16 58.8 2.9 2 3 0.85 3e+03 -3.4 0.0 245 282 1468 1510 1463 1525 0.69 SNF2 family N-terminal domain SNF2_N PF00176.23 350 pNC_022355_00012 - 1931 3.7e-16 58.8 2.9 3 3 0.2 7.2e+02 -1.4 0.1 169 209 1875 1923 1845 1924 0.73 SNF2 family N-terminal domain ResIII PF04851.15 171 pNC_022355_00012 - 1931 7.5e-08 32.6 8.9 1 2 2.1e-11 7.5e-08 32.6 8.9 2 148 999 1211 998 1242 0.69 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pNC_022355_00012 - 1931 7.5e-08 32.6 8.9 2 2 0.82 2.9e+03 -1.9 7.3 34 122 1798 1909 1724 1931 0.64 Type III restriction enzyme, res subunit Helicase_C PF00271.31 111 pNC_022355_00012 - 1931 9.7e-07 29.1 0.3 1 2 0.18 6.3e+02 0.8 0.0 45 73 1076 1104 1028 1109 0.81 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pNC_022355_00012 - 1931 9.7e-07 29.1 0.3 2 2 1.3e-08 4.8e-05 23.7 0.0 40 111 1510 1583 1466 1583 0.79 Helicase conserved C-terminal domain DEAD PF00270.29 176 pNC_022355_00012 - 1931 9.5e-06 25.5 2.0 1 2 3.2e-07 0.0012 18.7 0.4 2 108 1003 1108 1002 1205 0.56 DEAD/DEAH box helicase DEAD PF00270.29 176 pNC_022355_00012 - 1931 9.5e-06 25.5 2.0 2 2 0.12 4.2e+02 0.6 0.0 119 150 1882 1915 1827 1930 0.71 DEAD/DEAH box helicase Eco57I PF07669.11 106 pNC_022355_00012 - 1931 2.5e-05 24.7 0.7 1 2 6.1e-08 0.00022 21.7 0.2 3 103 371 471 369 474 0.80 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pNC_022355_00012 - 1931 2.5e-05 24.7 0.7 2 2 3 1.1e+04 -3.0 0.0 44 81 663 700 654 715 0.65 Eco57I restriction-modification methylase NYN PF01936.18 147 pNC_022355_00013 - 242 2.2e-10 41.2 0.3 1 1 6.8e-14 4e-10 40.3 0.3 43 122 123 207 17 220 0.82 NYN domain PIN7 PF18475.1 103 pNC_022355_00013 - 242 0.045 14.4 0.0 1 1 1.8e-05 0.11 13.1 0.0 61 103 162 204 140 204 0.91 PIN domain DUF1474 PF07342.11 100 pNC_022355_00013 - 242 0.054 14.0 0.2 1 2 2.4e-05 0.14 12.7 0.0 11 92 9 91 6 98 0.85 Protein of unknown function (DUF1474) DUF1474 PF07342.11 100 pNC_022355_00013 - 242 0.054 14.0 0.2 2 2 3 1.8e+04 -4.0 0.0 6 15 221 230 219 232 0.77 Protein of unknown function (DUF1474) Acetyltransf_7 PF13508.7 76 pNC_022355_00014 - 166 0.00015 22.1 0.0 1 1 1e-07 0.00031 21.1 0.0 29 75 12 75 2 76 0.60 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 117 pNC_022355_00014 - 166 0.003 17.8 0.0 1 1 2.5e-06 0.0073 16.5 0.0 65 92 14 41 6 74 0.80 Acetyltransferase (GNAT) family CENP-F_leu_zip PF10473.9 140 pNC_022355_00014 - 166 0.0052 16.8 0.3 1 1 2.7e-06 0.0082 16.2 0.3 24 67 103 146 86 150 0.87 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PHM7_cyt PF14703.6 176 pNC_022355_00014 - 166 0.095 12.9 0.2 1 1 5.2e-05 0.15 12.2 0.2 30 85 98 153 86 159 0.81 Cytosolic domain of 10TM putative phosphate transporter Acetyltransf_10 PF13673.7 127 pNC_022355_00014 - 166 0.12 12.4 0.0 1 1 0.00011 0.33 10.9 0.0 55 84 13 42 4 84 0.79 Acetyltransferase (GNAT) domain Spc24 PF08286.11 105 pNC_022355_00014 - 166 0.39 11.0 3.2 1 2 0.00045 1.3 9.3 0.2 54 89 63 108 31 115 0.67 Spc24 subunit of Ndc80 Spc24 PF08286.11 105 pNC_022355_00014 - 166 0.39 11.0 3.2 2 2 0.04 1.2e+02 3.0 0.7 12 43 111 142 101 152 0.69 Spc24 subunit of Ndc80 DUF3913 PF13052.6 57 pNC_022355_00015 - 82 0.046 14.0 0.3 1 1 4.2e-06 0.076 13.3 0.2 29 53 35 58 28 62 0.76 Protein of unknown function (DUF3913) Relaxase PF03432.14 242 pNC_022355_00016 - 462 4.7e-10 39.5 7.4 1 2 2.6e-14 4.7e-10 39.5 7.4 48 229 119 297 70 310 0.72 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pNC_022355_00016 - 462 4.7e-10 39.5 7.4 2 2 0.013 2.3e+02 1.2 5.8 119 183 326 395 318 427 0.70 Relaxase/Mobilisation nuclease domain HTH_46 PF15977.5 68 pNC_022355_00017 - 183 0.00015 21.7 6.3 1 3 0.00017 0.6 10.2 0.2 24 45 17 38 10 46 0.89 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pNC_022355_00017 - 183 0.00015 21.7 6.3 2 3 0.48 1.7e+03 -0.9 0.0 21 36 77 92 71 98 0.83 Winged helix-turn-helix DNA binding HTH_46 PF15977.5 68 pNC_022355_00017 - 183 0.00015 21.7 6.3 3 3 1.9e-05 0.07 13.2 0.8 16 62 108 156 97 162 0.86 Winged helix-turn-helix DNA binding Spore_III_AB PF09548.10 170 pNC_022355_00017 - 183 0.046 13.8 2.1 1 1 1.7e-05 0.063 13.4 1.5 55 131 19 103 9 124 0.70 Stage III sporulation protein AB (spore_III_AB) NLRC4_HD PF17889.1 107 pNC_022355_00017 - 183 0.18 12.1 5.5 1 2 0.00027 0.98 9.8 1.8 14 92 6 84 3 98 0.81 NLRC4 helical domain NLRC4_HD PF17889.1 107 pNC_022355_00017 - 183 0.18 12.1 5.5 2 2 0.016 56 4.1 0.1 45 88 102 143 94 161 0.74 NLRC4 helical domain U3_assoc_6 PF08640.11 83 pNC_022355_00017 - 183 0.41 10.7 8.1 1 3 0.32 1.1e+03 -0.3 0.1 40 55 12 27 4 54 0.75 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pNC_022355_00017 - 183 0.41 10.7 8.1 2 3 0.011 39 4.4 0.6 11 46 56 91 51 97 0.87 U3 small nucleolar RNA-associated protein 6 U3_assoc_6 PF08640.11 83 pNC_022355_00017 - 183 0.41 10.7 8.1 3 3 0.00029 1 9.4 0.3 8 31 103 126 102 133 0.90 U3 small nucleolar RNA-associated protein 6 DndE PF08870.11 112 pNC_022355_00017 - 183 0.42 10.9 6.2 1 2 0.078 2.8e+02 1.8 0.1 2 22 9 29 8 36 0.86 DNA sulphur modification protein DndE DndE PF08870.11 112 pNC_022355_00017 - 183 0.42 10.9 6.2 2 2 0.00015 0.54 10.5 1.0 1 48 71 118 71 159 0.86 DNA sulphur modification protein DndE CdvA PF18822.1 123 pNC_022355_00018 - 99 1.1 9.1 11.3 1 2 4.4e-05 0.26 11.1 5.3 18 48 6 36 3 40 0.89 CdvA-like coiled-coil domain CdvA PF18822.1 123 pNC_022355_00018 - 99 1.1 9.1 11.3 2 2 0.074 4.4e+02 0.7 0.1 97 112 60 75 46 85 0.67 CdvA-like coiled-coil domain ESP PF16590.5 91 pNC_022355_00018 - 99 1.4 9.3 6.9 1 2 0.025 1.5e+02 2.7 1.5 26 73 3 47 2 53 0.62 Exocrine gland-secreting peptide ESP PF16590.5 91 pNC_022355_00018 - 99 1.4 9.3 6.9 2 2 5.2e-05 0.31 11.3 1.2 26 59 43 79 42 99 0.74 Exocrine gland-secreting peptide DUF3671 PF12420.8 115 pNC_022355_00018 - 99 1.7 8.7 15.5 1 2 0.024 1.4e+02 2.6 3.6 24 49 17 42 3 46 0.72 Protein of unknown function DUF3671 PF12420.8 115 pNC_022355_00018 - 99 1.7 8.7 15.5 2 2 2.6e-05 0.15 12.1 4.1 4 42 59 95 56 98 0.85 Protein of unknown function Ribonuc_2-5A PF06479.12 127 pNC_022355_00022 - 152 0.065 13.4 5.2 1 1 2.2e-05 0.2 11.9 5.2 38 91 57 113 1 119 0.63 Ribonuclease 2-5A DUF5311 PF17238.2 194 pNC_022355_00022 - 152 0.065 13.1 0.1 1 1 1e-05 0.089 12.7 0.1 88 125 72 111 46 123 0.81 Family of unknown function (DUF5311) Toprim_3 PF13362.6 95 pNC_022355_00023 - 408 1.9e-08 34.6 0.0 1 1 8.5e-12 3.8e-08 33.6 0.0 3 93 270 374 268 376 0.87 Toprim domain Paz_1 PF18349.1 93 pNC_022355_00023 - 408 0.09 12.7 0.3 1 1 7.4e-05 0.33 10.9 0.3 52 81 138 167 113 170 0.76 PAZ domain Toprim_4 PF13662.6 89 pNC_022355_00023 - 408 0.14 12.6 0.1 1 1 6.8e-05 0.3 11.6 0.1 2 78 268 344 267 353 0.84 Toprim domain 5_3_exonuc PF01367.20 97 pNC_022355_00023 - 408 0.19 12.3 4.2 1 2 0.031 1.4e+02 3.2 0.6 53 86 142 173 121 203 0.69 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc PF01367.20 97 pNC_022355_00023 - 408 0.19 12.3 4.2 2 2 0.00031 1.4 9.6 0.2 15 80 321 382 319 404 0.67 5'-3' exonuclease, C-terminal SAM fold DUF4223 PF13978.6 54 pNC_022355_00024 - 97 0.007 16.3 0.0 1 1 1.7e-06 0.015 15.3 0.0 1 21 1 22 1 38 0.90 Protein of unknown function (DUF4223) nec1 PF10379.9 184 pNC_022355_00024 - 97 0.067 12.7 0.0 1 1 1.1e-05 0.099 12.1 0.0 65 105 56 94 35 96 0.75 Virulence protein nec1 Sdh_cyt PF01127.22 121 pNC_022355_00025 - 91 0.0011 19.0 0.6 1 1 2.1e-07 0.0013 18.8 0.6 34 88 20 76 18 88 0.84 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2206 PF09971.9 374 pNC_022355_00025 - 91 0.031 13.0 4.0 1 1 5.5e-06 0.033 13.0 4.0 144 207 16 78 4 90 0.76 Predicted membrane protein (DUF2206) DUF2633 PF11119.8 57 pNC_022355_00025 - 91 0.97 9.4 4.2 1 1 0.00033 2 8.4 4.2 11 33 27 50 20 53 0.83 Protein of unknown function (DUF2633) HicB_lk_antitox PF15919.5 123 pNC_022355_00027 - 72 6.3e-09 36.0 0.0 1 1 3.7e-13 6.6e-09 35.9 0.0 3 60 5 61 3 71 0.85 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 58 pNC_022355_00028 - 67 7.7e-12 45.1 0.3 1 1 5.2e-16 9.4e-12 44.8 0.3 2 54 10 60 9 64 0.90 HicA toxin of bacterial toxin-antitoxin, AAA_25 PF13481.6 194 pNC_022355_00029 - 597 5.3e-15 55.5 0.0 1 1 4.4e-18 1.1e-14 54.4 0.0 30 193 30 175 19 176 0.86 AAA domain DnaB_C PF03796.15 255 pNC_022355_00029 - 597 0.00032 20.1 0.0 1 2 7.6e-07 0.002 17.5 0.0 16 117 30 136 24 156 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pNC_022355_00029 - 597 0.00032 20.1 0.0 2 2 0.01 26 4.0 0.0 119 183 110 176 81 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pNC_022355_00029 - 597 0.0023 17.7 0.0 1 2 5.6e-06 0.014 15.1 0.0 46 87 32 73 21 95 0.85 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pNC_022355_00029 - 597 0.0023 17.7 0.0 2 2 0.54 1.4e+03 -1.1 0.0 99 118 111 130 103 167 0.68 IstB-like ATP binding protein ATPase PF06745.13 231 pNC_022355_00029 - 597 0.0087 15.4 0.0 1 2 2.9e-05 0.074 12.4 0.0 16 70 30 83 26 100 0.92 KaiC ATPase PF06745.13 231 pNC_022355_00029 - 597 0.0087 15.4 0.0 2 2 0.63 1.6e+03 -1.8 0.0 137 160 329 352 322 358 0.85 KaiC AAA PF00004.29 132 pNC_022355_00029 - 597 0.014 15.8 0.2 1 2 0.00013 0.33 11.4 0.0 2 105 37 166 36 177 0.66 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pNC_022355_00029 - 597 0.014 15.8 0.2 2 2 0.17 4.4e+02 1.3 0.0 47 74 411 434 377 459 0.69 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pNC_022355_00029 - 597 0.16 12.0 1.8 1 1 0.00032 0.82 9.7 1.8 1 29 35 63 35 537 0.90 CobQ/CobB/MinD/ParA nucleotide binding domain ApoC-I PF04691.12 61 pNC_022355_00029 - 597 0.38 10.7 3.0 1 3 0.002 5.1 7.1 0.0 10 35 57 82 54 87 0.90 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pNC_022355_00029 - 597 0.38 10.7 3.0 2 3 0.17 4.4e+02 0.9 0.3 18 32 402 416 386 422 0.86 Apolipoprotein C-I (ApoC-1) ApoC-I PF04691.12 61 pNC_022355_00029 - 597 0.38 10.7 3.0 3 3 0.63 1.6e+03 -0.9 0.1 10 20 522 532 517 540 0.73 Apolipoprotein C-I (ApoC-1) Resolvase PF00239.21 146 pNC_022355_00030 - 204 4.2e-34 117.7 0.8 1 1 9.5e-38 5.7e-34 117.3 0.8 2 146 3 145 2 145 0.96 Resolvase, N terminal domain HTH_38 PF13936.6 44 pNC_022355_00030 - 204 0.034 13.9 0.9 1 3 0.82 4.9e+03 -2.6 0.1 8 19 47 58 46 62 0.78 Helix-turn-helix domain HTH_38 PF13936.6 44 pNC_022355_00030 - 204 0.034 13.9 0.9 2 3 0.0018 10 5.9 0.0 2 35 117 151 117 154 0.87 Helix-turn-helix domain HTH_38 PF13936.6 44 pNC_022355_00030 - 204 0.034 13.9 0.9 3 3 0.0027 16 5.3 0.0 11 26 162 177 158 180 0.88 Helix-turn-helix domain HTH_Mga PF08280.11 60 pNC_022355_00030 - 204 0.036 14.1 4.2 1 3 4.3e-05 0.26 11.4 0.7 24 59 9 44 2 45 0.86 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pNC_022355_00030 - 204 0.036 14.1 4.2 2 3 1.1 6.7e+03 -2.8 0.0 8 16 78 86 72 89 0.72 M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280.11 60 pNC_022355_00030 - 204 0.036 14.1 4.2 3 3 0.02 1.2e+02 2.9 0.0 39 55 159 175 158 177 0.90 M protein trans-acting positive regulator (MGA) HTH domain CRISPR_Cas2 PF09827.9 76 pNC_022355_00031 - 135 0.00073 19.7 0.0 1 2 1.2e-07 0.0022 18.2 0.0 5 53 8 71 5 88 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pNC_022355_00031 - 135 0.00073 19.7 0.0 2 2 0.011 2e+02 2.2 0.0 12 33 55 75 53 99 0.82 CRISPR associated protein Cas2 TrbC PF04956.13 99 pNC_022355_00033 - 87 1.8e-14 53.8 7.8 1 1 2.1e-18 1.9e-14 53.7 7.8 19 99 5 85 1 85 0.94 TrbC/VIRB2 family DUF2062 PF09835.9 148 pNC_022355_00033 - 87 0.055 13.3 4.1 1 1 6.9e-06 0.062 13.2 3.5 76 135 35 87 25 87 0.68 Uncharacterized protein conserved in bacteria (DUF2062) CagE_TrbE_VirB PF03135.14 206 pNC_022355_00034 - 922 3.1e-51 174.4 0.4 1 1 7.9e-55 7.1e-51 173.2 0.4 2 206 277 482 276 482 0.99 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pNC_022355_00034 - 922 3.6e-21 75.2 0.8 1 1 6.9e-25 6.2e-21 74.4 0.8 2 83 3 84 2 85 0.96 Type IV secretory pathway, VirB3-like protein Phage_pRha PF09669.10 88 pNC_022355_00035 - 185 8.6e-29 99.9 0.0 1 1 2.3e-32 1.4e-28 99.3 0.0 2 88 24 119 23 119 0.89 Phage regulatory protein Rha (Phage_pRha) SRA PF18491.1 140 pNC_022355_00035 - 185 0.066 13.3 0.1 1 1 2.5e-05 0.15 12.2 0.1 3 37 7 43 5 53 0.81 SET and RING associated domain DUF2250 PF10007.9 93 pNC_022355_00035 - 185 0.13 12.3 0.0 1 1 5.1e-05 0.31 11.2 0.0 23 90 27 94 23 96 0.92 Uncharacterized protein conserved in archaea (DUF2250) PBECR2 PF18810.1 119 pNC_022355_00036 - 183 0.062 13.6 0.1 1 1 5.5e-06 0.099 12.9 0.1 37 80 33 79 14 117 0.66 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 SSB PF00436.25 104 pNC_022355_00037 - 140 2.3e-25 88.6 0.1 1 1 1.6e-29 2.9e-25 88.3 0.1 1 102 1 102 1 104 0.98 Single-strand binding protein family IF2_N PF04760.15 54 pNC_022355_00038 - 91 0.00029 20.6 7.3 1 2 1.1e-07 0.00049 19.9 2.0 3 50 5 50 4 52 0.92 Translation initiation factor IF-2, N-terminal region IF2_N PF04760.15 54 pNC_022355_00038 - 91 0.00029 20.6 7.3 2 2 0.014 61 3.5 0.3 31 53 57 79 56 80 0.85 Translation initiation factor IF-2, N-terminal region FliG_N PF14842.6 104 pNC_022355_00038 - 91 0.018 15.6 1.1 1 1 4.8e-06 0.021 15.3 1.1 21 87 9 81 1 85 0.90 FliG N-terminal domain HTH_16 PF12645.7 65 pNC_022355_00038 - 91 0.041 13.9 2.0 1 2 0.031 1.4e+02 2.6 0.1 47 64 9 30 3 31 0.62 Helix-turn-helix domain HTH_16 PF12645.7 65 pNC_022355_00038 - 91 0.041 13.9 2.0 2 2 8.4e-05 0.38 10.8 0.4 15 54 44 82 40 85 0.85 Helix-turn-helix domain PSK_trans_fac PF07704.11 82 pNC_022355_00038 - 91 0.088 13.6 0.3 1 2 0.00048 2.2 9.1 0.1 4 27 2 25 1 27 0.83 Rv0623-like transcription factor PSK_trans_fac PF07704.11 82 pNC_022355_00038 - 91 0.088 13.6 0.3 2 2 0.049 2.2e+02 2.7 0.0 29 51 69 91 63 91 0.79 Rv0623-like transcription factor T4SS PF07996.11 197 pNC_022355_00039 - 329 1.7e-28 100.4 13.1 1 1 5.2e-32 2.3e-28 99.9 13.1 1 194 94 298 94 300 0.91 Type IV secretion system proteins DUF3045 PF11243.8 88 pNC_022355_00039 - 329 0.0035 17.5 0.5 1 2 0.27 1.2e+03 -0.3 0.0 30 54 134 158 120 171 0.80 Protein of unknown function (DUF3045) DUF3045 PF11243.8 88 pNC_022355_00039 - 329 0.0035 17.5 0.5 2 2 4.7e-06 0.021 15.0 0.2 18 82 195 259 185 263 0.91 Protein of unknown function (DUF3045) VWA_2 PF13519.6 107 pNC_022355_00039 - 329 0.018 15.7 0.8 1 2 1.3 6e+03 -2.1 0.0 55 70 124 139 101 163 0.57 von Willebrand factor type A domain VWA_2 PF13519.6 107 pNC_022355_00039 - 329 0.018 15.7 0.8 2 2 8.6e-06 0.039 14.6 0.2 31 84 208 270 197 295 0.83 von Willebrand factor type A domain AATF-Che1 PF13339.6 139 pNC_022355_00039 - 329 0.48 11.1 11.5 1 2 0.042 1.9e+02 2.7 0.8 49 135 108 145 95 182 0.47 Apoptosis antagonizing transcription factor AATF-Che1 PF13339.6 139 pNC_022355_00039 - 329 0.48 11.1 11.5 2 2 8.9e-05 0.4 11.4 4.6 49 117 225 307 205 328 0.69 Apoptosis antagonizing transcription factor TrbL PF04610.14 215 pNC_022355_00040 - 331 2.1e-30 106.1 33.3 1 2 4.7e-34 2.1e-30 106.1 33.3 1 214 39 251 39 252 0.93 TrbL/VirB6 plasmid conjugal transfer protein TrbL PF04610.14 215 pNC_022355_00040 - 331 2.1e-30 106.1 33.3 2 2 0.59 2.6e+03 -2.1 0.1 58 88 289 325 260 330 0.47 TrbL/VirB6 plasmid conjugal transfer protein T_cell_tran_alt PF15128.6 92 pNC_022355_00040 - 331 0.069 13.0 1.0 1 2 0.54 2.4e+03 -1.6 0.1 39 51 70 82 61 114 0.53 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pNC_022355_00040 - 331 0.069 13.0 1.0 2 2 5e-05 0.23 11.3 0.1 37 81 243 287 222 298 0.78 T-cell leukemia translocation-altered DUF3606 PF12244.8 54 pNC_022355_00040 - 331 0.17 11.9 0.0 1 1 6.8e-05 0.3 11.0 0.0 26 46 6 26 1 30 0.87 Protein of unknown function (DUF3606) AIM3 PF17096.5 88 pNC_022355_00040 - 331 0.3 12.1 6.0 1 1 0.00013 0.57 11.1 6.0 9 38 299 328 284 330 0.89 Altered inheritance of mitochondria protein 3 La_HTH_kDCL PF18177.1 90 pNC_022355_00041 - 54 0.2 12.0 0.0 1 1 1.2e-05 0.22 11.9 0.0 20 42 21 44 16 53 0.81 La HTH in kinetoplastid DICER domain VirB8 PF04335.13 214 pNC_022355_00042 - 219 1.6e-52 178.5 0.5 1 1 2e-56 1.8e-52 178.3 0.5 4 214 10 217 7 217 0.89 VirB8 protein OppC_N PF12911.7 51 pNC_022355_00042 - 219 0.045 13.7 0.5 1 1 9.8e-06 0.088 12.8 0.5 11 36 21 46 21 64 0.83 N-terminal TM domain of oligopeptide transport permease C CagX PF03524.15 211 pNC_022355_00043 - 298 9.6e-56 188.8 1.9 1 1 8.4e-60 1.5e-55 188.2 1.9 2 211 32 273 31 273 0.92 Conjugal transfer protein TrbI PF03743.14 187 pNC_022355_00044 - 392 2.4e-47 161.2 0.0 1 2 0.83 7.5e+03 -3.4 0.3 136 154 141 166 120 174 0.53 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pNC_022355_00044 - 392 2.4e-47 161.2 0.0 2 2 2.7e-51 2.4e-47 161.2 0.0 1 187 195 376 195 376 0.95 Bacterial conjugation TrbI-like protein RE_HaeIII PF09556.10 298 pNC_022355_00044 - 392 0.043 12.9 0.1 1 1 7.5e-06 0.067 12.3 0.1 31 81 323 373 306 378 0.90 HaeIII restriction endonuclease T2SSE PF00437.20 273 pNC_022355_00045 - 339 6.9e-55 186.0 0.0 1 1 1.4e-57 8.1e-55 185.8 0.0 7 270 15 312 9 315 0.94 Type II/IV secretion system protein ABC_tran PF00005.27 137 pNC_022355_00045 - 339 7.2e-05 23.3 0.0 1 1 2.7e-07 0.00015 22.3 0.0 5 50 154 200 152 226 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pNC_022355_00045 - 339 0.00012 21.6 0.0 1 1 3.2e-07 0.00018 21.0 0.0 33 60 154 181 130 186 0.80 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pNC_022355_00045 - 339 0.00028 20.4 0.0 1 1 9.2e-07 0.00052 19.6 0.0 18 57 145 184 133 195 0.83 P-loop containing dynein motor region AAA_22 PF13401.6 137 pNC_022355_00045 - 339 0.0014 18.9 0.0 1 1 4.7e-06 0.0026 18.0 0.0 5 56 160 221 155 244 0.72 AAA domain DEAD PF00270.29 176 pNC_022355_00045 - 339 0.0014 18.4 0.0 1 1 4.1e-06 0.0023 17.7 0.0 2 36 148 181 147 247 0.81 DEAD/DEAH box helicase AAA_24 PF13479.6 197 pNC_022355_00045 - 339 0.0026 17.5 0.2 1 1 9.7e-06 0.0054 16.5 0.0 3 33 161 188 159 229 0.74 AAA domain TsaE PF02367.17 125 pNC_022355_00045 - 339 0.0035 17.3 0.0 1 1 1.3e-05 0.0073 16.3 0.0 10 45 152 186 141 194 0.74 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 362 pNC_022355_00045 - 339 0.0055 15.7 0.0 1 1 1.4e-05 0.0079 15.1 0.0 21 65 160 202 150 235 0.74 AAA-like domain NACHT PF05729.12 166 pNC_022355_00045 - 339 0.0073 16.2 0.0 1 1 2.3e-05 0.013 15.5 0.0 3 22 163 182 161 188 0.89 NACHT domain Septin PF00735.18 281 pNC_022355_00045 - 339 0.0088 15.4 0.0 1 1 2.6e-05 0.014 14.7 0.0 6 33 162 189 158 209 0.79 Septin ATPase_2 PF01637.18 233 pNC_022355_00045 - 339 0.0091 15.9 0.0 1 1 2.4e-05 0.013 15.4 0.0 23 82 163 226 153 305 0.85 ATPase domain predominantly from Archaea DUF87 PF01935.17 227 pNC_022355_00045 - 339 0.018 15.1 0.0 1 1 6.4e-05 0.036 14.2 0.0 27 48 164 185 142 193 0.83 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 386 pNC_022355_00045 - 339 0.021 13.8 0.0 1 1 6.2e-05 0.035 13.0 0.0 17 50 162 195 155 221 0.76 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 171 pNC_022355_00045 - 339 0.023 14.7 0.0 1 1 9.6e-05 0.054 13.5 0.0 5 50 147 186 135 248 0.73 Type III restriction enzyme, res subunit AAA_29 PF13555.6 61 pNC_022355_00045 - 339 0.024 14.4 0.0 1 1 9.2e-05 0.051 13.3 0.0 23 39 160 177 140 184 0.77 P-loop containing region of AAA domain Sigma54_activat PF00158.26 168 pNC_022355_00045 - 339 0.026 14.2 0.0 1 1 9.8e-05 0.055 13.2 0.0 14 44 152 182 143 199 0.84 Sigma-54 interaction domain Pox_A32 PF04665.12 242 pNC_022355_00045 - 339 0.031 13.8 0.0 1 1 0.00011 0.061 12.8 0.0 15 37 162 184 152 213 0.87 Poxvirus A32 protein AAA_14 PF13173.6 131 pNC_022355_00045 - 339 0.035 14.2 0.1 1 1 0.00019 0.11 12.6 0.0 3 50 161 208 159 234 0.76 AAA domain ATP_bind_1 PF03029.17 241 pNC_022355_00045 - 339 0.04 13.7 0.0 1 1 0.00011 0.064 13.0 0.0 1 24 165 188 165 193 0.87 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 107 pNC_022355_00045 - 339 0.046 14.1 0.0 1 1 0.00019 0.11 12.9 0.0 1 23 163 185 163 224 0.79 RNA helicase Zeta_toxin PF06414.12 199 pNC_022355_00045 - 339 0.046 13.0 0.0 1 1 0.00015 0.082 12.2 0.0 14 49 158 193 147 207 0.84 Zeta toxin PRK PF00485.18 197 pNC_022355_00045 - 339 0.058 13.1 0.0 1 1 0.0002 0.11 12.2 0.0 2 37 163 197 162 224 0.67 Phosphoribulokinase / Uridine kinase family GvpD PF07088.11 484 pNC_022355_00045 - 339 0.065 11.9 0.0 1 1 0.00016 0.092 11.4 0.0 8 43 158 193 150 261 0.74 GvpD gas vesicle protein AAA_16 PF13191.6 170 pNC_022355_00045 - 339 0.075 13.4 0.0 1 1 0.0002 0.11 12.8 0.0 23 55 160 192 145 289 0.79 AAA ATPase domain MobB PF03205.14 133 pNC_022355_00045 - 339 0.089 12.7 0.0 1 1 0.00036 0.2 11.5 0.0 2 24 163 185 162 204 0.84 Molybdopterin guanine dinucleotide synthesis protein B Microtub_bd PF16796.5 149 pNC_022355_00045 - 339 0.089 12.7 0.4 1 1 0.00039 0.22 11.5 0.3 71 102 149 179 129 220 0.81 Microtubule binding NTPase_1 PF03266.15 168 pNC_022355_00045 - 339 0.11 12.4 0.1 1 1 0.00042 0.23 11.3 0.1 1 24 162 185 162 193 0.87 NTPase AAA_18 PF13238.6 130 pNC_022355_00045 - 339 0.12 13.0 0.0 1 2 8.1 4.6e+03 -1.9 0.0 25 60 14 49 4 61 0.76 AAA domain AAA_18 PF13238.6 130 pNC_022355_00045 - 339 0.12 13.0 0.0 2 2 0.0007 0.39 11.3 0.0 1 18 163 180 163 279 0.76 AAA domain cobW PF02492.19 177 pNC_022355_00045 - 339 0.15 11.7 0.0 1 1 0.00043 0.24 11.0 0.0 3 22 163 182 161 205 0.78 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 192 pNC_022355_00045 - 339 0.15 11.7 0.0 1 1 0.00044 0.24 11.1 0.0 10 41 153 183 146 193 0.76 AAA domain AAA_23 PF13476.6 200 pNC_022355_00045 - 339 0.38 11.2 4.1 1 2 2.7 1.5e+03 -0.5 0.1 69 130 93 150 40 161 0.63 AAA domain AAA_23 PF13476.6 200 pNC_022355_00045 - 339 0.38 11.2 4.1 2 2 0.00068 0.38 11.2 1.3 22 37 163 178 160 184 0.87 AAA domain Carbam_trans_N PF02543.15 338 pNC_022355_00046 - 267 0.053 13.2 0.0 1 1 4.1e-06 0.073 12.7 0.0 195 313 117 236 74 243 0.86 Carbamoyltransferase N-terminus T4SS-DNA_transf PF02534.14 469 pNC_022355_00047 - 603 8.3e-104 348.0 0.1 1 1 3.2e-107 1.1e-103 347.5 0.1 3 460 94 563 82 571 0.88 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pNC_022355_00047 - 603 3.5e-24 85.2 0.0 1 1 1.9e-27 6.8e-24 84.3 0.0 2 125 406 528 405 529 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pNC_022355_00047 - 603 3.2e-15 55.9 0.0 1 2 2e-06 0.0072 15.3 0.0 41 156 149 276 125 298 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pNC_022355_00047 - 603 3.2e-15 55.9 0.0 2 2 1.6e-13 5.8e-10 38.6 0.0 187 369 347 531 310 543 0.81 Type IV secretion-system coupling protein DNA-binding domain Phage_holin_3_6 PF07332.11 113 pNC_022355_00047 - 603 0.17 11.9 0.1 1 1 8.3e-05 0.3 11.2 0.1 37 93 9 87 3 100 0.78 Putative Actinobacterial Holin-X, holin superfamily III ECF_trnsprt PF12822.7 172 pNC_022355_00047 - 603 1.2 9.2 8.3 1 1 0.00056 2 8.5 8.3 101 168 4 79 1 81 0.85 ECF transporter, substrate-specific component Cag12 PF13117.6 97 pNC_022355_00048 - 143 1.4e-16 60.7 0.3 1 1 2.1e-20 1.9e-16 60.4 0.3 6 97 28 119 24 119 0.91 Cag pathogenicity island protein Cag12 DUF2689 PF10894.8 57 pNC_022355_00048 - 143 0.06 13.1 0.4 1 1 1.7e-05 0.16 11.8 0.4 10 40 61 98 55 107 0.74 Protein of unknown function (DUF2689) TrbM PF07424.11 156 pNC_022355_00049 - 252 4.1e-38 130.8 2.0 1 1 2.9e-42 5.3e-38 130.4 2.0 1 154 25 190 25 192 0.88 TrbM PRELI PF04707.14 157 pNC_022355_00050 - 265 0.044 13.6 0.3 1 2 0.26 2.4e+03 -1.8 0.1 107 133 23 45 5 72 0.49 PRELI-like family PRELI PF04707.14 157 pNC_022355_00050 - 265 0.044 13.6 0.3 2 2 4.9e-06 0.044 13.6 0.3 96 155 83 147 78 149 0.87 PRELI-like family TACC_C PF05010.14 201 pNC_022355_00050 - 265 0.92 9.3 9.3 1 2 0.00027 2.4 7.9 8.2 14 124 2 111 1 135 0.79 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TACC_C PF05010.14 201 pNC_022355_00050 - 265 0.92 9.3 9.3 2 2 0.035 3.2e+02 1.0 1.1 8 45 100 139 94 148 0.70 Transforming acidic coiled-coil-containing protein (TACC), C-terminal CdhD PF03599.16 386 pNC_022355_00051 - 246 0.002 16.9 0.0 1 1 5.3e-07 0.0031 16.3 0.0 269 358 39 127 30 136 0.86 CO dehydrogenase/acetyl-CoA synthase delta subunit Pox_RNA_pol PF03293.14 160 pNC_022355_00051 - 246 0.012 15.3 0.9 1 1 4.5e-06 0.027 14.2 0.9 35 158 20 138 7 140 0.83 Poxvirus DNA-directed RNA polymerase, 18 kD subunit Redoxin PF08534.10 147 pNC_022355_00051 - 246 0.059 13.1 0.5 1 2 0.079 4.7e+02 0.4 0.0 117 146 49 76 31 77 0.79 Redoxin Redoxin PF08534.10 147 pNC_022355_00051 - 246 0.059 13.1 0.5 2 2 7.9e-05 0.47 10.2 0.1 49 76 184 213 178 230 0.79 Redoxin DUF1461 PF07314.11 189 pNC_022355_00052 - 213 0.13 12.2 1.5 1 1 1.1e-05 0.2 11.5 1.5 26 70 99 142 85 160 0.79 Protein of unknown function (DUF1461) Topoisom_bac PF01131.20 413 pNC_022355_00053 - 730 8e-97 324.9 8.1 1 1 1.1e-99 1.1e-96 324.4 8.1 5 412 154 597 151 598 0.91 DNA topoisomerase Toprim PF01751.22 103 pNC_022355_00053 - 730 6.3e-12 45.6 2.6 1 2 9.2e-15 9.7e-12 45.0 0.1 2 101 3 132 2 134 0.91 Toprim domain Toprim PF01751.22 103 pNC_022355_00053 - 730 6.3e-12 45.6 2.6 2 2 3.8 4.1e+03 -1.9 0.5 78 78 521 521 478 566 0.59 Toprim domain zf-C4_Topoisom PF01396.19 39 pNC_022355_00053 - 730 5.6e-08 32.4 15.3 1 2 1.6e-08 1.7e-05 24.5 5.5 2 36 628 664 627 667 0.82 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pNC_022355_00053 - 730 5.6e-08 32.4 15.3 2 2 8e-05 0.084 12.7 2.2 3 27 683 710 681 718 0.89 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pNC_022355_00053 - 730 1e-05 25.7 2.3 1 3 8.8 9.3e+03 -3.0 0.1 29 35 594 600 593 600 0.84 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pNC_022355_00053 - 730 1e-05 25.7 2.3 2 3 0.00039 0.41 10.9 0.0 18 32 624 638 614 640 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pNC_022355_00053 - 730 1e-05 25.7 2.3 3 3 4e-05 0.043 14.1 0.0 18 35 678 695 671 695 0.75 zinc-ribbon Zn-ribbon_8 PF09723.10 40 pNC_022355_00053 - 730 0.012 15.7 1.3 1 2 0.0082 8.6 6.6 0.1 14 34 616 635 612 641 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pNC_022355_00053 - 730 0.012 15.7 1.3 2 2 0.0047 5 7.3 0.1 15 38 671 694 668 695 0.73 Zinc ribbon domain zf-H2C2_2 PF13465.6 26 pNC_022355_00053 - 730 0.028 14.9 8.1 1 2 0.0011 1.2 9.7 0.2 13 26 625 639 621 639 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pNC_022355_00053 - 730 0.028 14.9 8.1 2 2 0.0012 1.3 9.6 0.2 12 25 679 692 673 693 0.85 Zinc-finger double domain FLYWCH PF04500.16 62 pNC_022355_00053 - 730 0.039 14.1 3.0 1 2 0.051 54 4.0 0.0 25 42 644 660 636 672 0.81 FLYWCH zinc finger domain FLYWCH PF04500.16 62 pNC_022355_00053 - 730 0.039 14.1 3.0 2 2 0.0013 1.3 9.2 1.0 15 55 690 729 687 730 0.84 FLYWCH zinc finger domain zf-C2H2_4 PF13894.6 24 pNC_022355_00053 - 730 0.056 14.3 2.8 1 2 0.0075 7.9 7.6 0.2 2 14 629 641 628 644 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 pNC_022355_00053 - 730 0.056 14.3 2.8 2 2 0.022 23 6.2 0.2 1 11 682 692 682 696 0.87 C2H2-type zinc finger zf-ribbon_3 PF13248.6 26 pNC_022355_00053 - 730 0.087 12.3 2.7 1 2 0.0032 3.4 7.2 0.2 2 14 627 640 626 642 0.83 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pNC_022355_00053 - 730 0.087 12.3 2.7 2 2 0.021 22 4.6 0.2 4 12 683 692 681 694 0.80 zinc-ribbon domain EF-hand_8 PF13833.6 55 pNC_022355_00053 - 730 0.094 12.6 0.0 1 1 0.00029 0.3 11.0 0.0 26 53 94 121 89 123 0.91 EF-hand domain pair zf-LITAF-like PF10601.9 70 pNC_022355_00053 - 730 0.095 13.0 4.5 1 2 0.00099 1 9.6 3.7 5 64 627 689 623 696 0.70 LITAF-like zinc ribbon domain zf-LITAF-like PF10601.9 70 pNC_022355_00053 - 730 0.095 13.0 4.5 2 2 0.0025 2.7 8.3 0.7 4 29 680 705 677 710 0.61 LITAF-like zinc ribbon domain HTH_34 PF13601.6 80 pNC_022355_00053 - 730 0.46 10.7 3.3 1 3 1.8 1.9e+03 -0.9 0.0 26 47 362 383 352 388 0.80 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pNC_022355_00053 - 730 0.46 10.7 3.3 2 3 5.3 5.6e+03 -2.4 0.1 46 63 472 489 470 492 0.84 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pNC_022355_00053 - 730 0.46 10.7 3.3 3 3 0.00081 0.85 9.8 0.1 32 67 531 561 526 570 0.82 Winged helix DNA-binding domain zf_UBZ PF18439.1 32 pNC_022355_00053 - 730 0.54 9.9 3.0 1 2 0.032 33 4.2 0.3 3 13 628 638 627 642 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 pNC_022355_00053 - 730 0.54 9.9 3.0 2 2 0.012 12 5.6 0.2 2 13 681 692 680 696 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 36 pNC_022355_00053 - 730 0.64 10.0 3.8 1 2 0.0043 4.5 7.3 0.2 2 12 627 637 627 638 0.88 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pNC_022355_00053 - 730 0.64 10.0 3.8 2 2 0.14 1.5e+02 2.4 0.4 5 12 684 691 682 692 0.83 zinc-ribbon domain zf-C2H2_6 PF13912.6 27 pNC_022355_00053 - 730 0.75 9.9 3.8 1 2 0.11 1.1e+02 2.9 0.2 4 11 630 637 629 639 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 pNC_022355_00053 - 730 0.75 9.9 3.8 2 2 0.0041 4.3 7.4 0.4 2 11 682 691 681 691 0.92 C2H2-type zinc finger PADR1 PF08063.12 53 pNC_022355_00053 - 730 1.6 8.6 5.5 1 2 0.021 23 4.9 0.9 15 31 629 645 627 655 0.87 PADR1 (NUC008) domain PADR1 PF08063.12 53 pNC_022355_00053 - 730 1.6 8.6 5.5 2 2 0.017 18 5.2 0.3 14 25 682 693 680 702 0.85 PADR1 (NUC008) domain zf-C2HC_2 PF13913.6 25 pNC_022355_00053 - 730 8.4 6.4 6.5 1 2 0.011 11 6.0 0.6 3 16 628 641 626 641 0.89 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 pNC_022355_00053 - 730 8.4 6.4 6.5 2 2 0.093 98 3.0 0.7 2 13 681 692 680 694 0.86 zinc-finger of a C2HC-type PcfJ PF14284.6 144 pNC_022355_00054 - 473 5.4e-05 23.1 2.2 1 1 1.5e-08 0.00013 21.8 2.2 4 133 331 456 328 466 0.66 PcfJ-like protein Intein_splicing PF14890.6 134 pNC_022355_00054 - 473 0.023 14.7 3.9 1 1 1.8e-05 0.17 11.9 3.9 37 125 311 444 211 452 0.79 Intein splicing domain APH PF01636.23 240 pNC_022355_00056 - 306 5.8e-22 78.8 0.0 1 1 2.1e-25 7.5e-22 78.4 0.0 13 230 39 256 27 265 0.75 Phosphotransferase enzyme family RIO1 PF01163.22 188 pNC_022355_00056 - 306 2.1e-06 27.5 0.1 1 2 0.00064 2.3 7.8 0.0 47 111 52 117 46 131 0.76 RIO1 family RIO1 PF01163.22 188 pNC_022355_00056 - 306 2.1e-06 27.5 0.1 2 2 5.8e-07 0.0021 17.7 0.1 97 154 165 223 149 253 0.81 RIO1 family DUF1679 PF07914.11 414 pNC_022355_00056 - 306 0.00034 19.6 0.1 1 2 1 3.7e+03 -3.6 0.0 113 142 60 89 55 92 0.78 Protein of unknown function (DUF1679) DUF1679 PF07914.11 414 pNC_022355_00056 - 306 0.00034 19.6 0.1 2 2 1.6e-07 0.00056 18.9 0.0 213 318 134 238 102 253 0.70 Protein of unknown function (DUF1679) Choline_kinase PF01633.20 213 pNC_022355_00056 - 306 0.00076 19.1 0.2 1 2 5.9e-07 0.0021 17.7 0.1 21 171 61 218 46 219 0.67 Choline/ethanolamine kinase Choline_kinase PF01633.20 213 pNC_022355_00056 - 306 0.00076 19.1 0.2 2 2 0.51 1.8e+03 -1.7 0.0 6 25 249 268 247 271 0.89 Choline/ethanolamine kinase EcKinase PF02958.20 294 pNC_022355_00056 - 306 0.0095 15.3 0.1 1 1 3.7e-06 0.013 14.8 0.1 189 270 162 243 121 262 0.65 Ecdysteroid kinase GTP_EFTU PF00009.27 194 pNC_022355_00057 - 639 5.6e-59 198.9 0.3 1 1 3.9e-62 7.8e-59 198.5 0.3 2 191 2 237 1 240 0.92 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 121 pNC_022355_00057 - 639 3.5e-23 81.7 0.0 1 2 3.7 7.4e+03 -3.3 0.0 82 93 64 75 60 79 0.78 Elongation factor G, domain IV EFG_IV PF03764.18 121 pNC_022355_00057 - 639 3.5e-23 81.7 0.0 2 2 4.9e-26 9.7e-23 80.2 0.0 1 120 416 531 416 532 0.98 Elongation factor G, domain IV EFG_C PF00679.24 89 pNC_022355_00057 - 639 1.3e-16 60.4 0.0 1 1 1.5e-19 3e-16 59.2 0.0 1 83 534 615 534 618 0.97 Elongation factor G C-terminus EFG_II PF14492.6 75 pNC_022355_00057 - 639 2.1e-12 46.9 0.1 1 1 2.5e-15 5e-12 45.7 0.1 2 74 342 414 341 415 0.98 Elongation Factor G, domain II MMR_HSR1 PF01926.23 114 pNC_022355_00057 - 639 2e-06 27.9 0.1 1 1 2.3e-09 4.6e-06 26.7 0.1 4 114 8 129 5 129 0.79 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 74 pNC_022355_00057 - 639 0.00055 20.3 0.0 1 1 6.7e-07 0.0013 19.0 0.0 4 58 266 314 264 318 0.87 Elongation factor Tu domain 2 RF3_C PF16658.5 131 pNC_022355_00057 - 639 0.0091 15.8 0.0 1 1 9.7e-06 0.019 14.8 0.0 16 82 351 417 343 434 0.76 Class II release factor RF3, C-terminal domain Septin PF00735.18 281 pNC_022355_00057 - 639 0.021 14.1 0.1 1 1 1.9e-05 0.038 13.3 0.1 9 76 8 82 3 91 0.72 Septin AIG1 PF04548.16 212 pNC_022355_00057 - 639 0.05 12.9 0.0 1 1 5.9e-05 0.12 11.7 0.0 32 62 51 81 43 108 0.84 AIG1 family CPSF_A PF03178.15 322 pNC_022355_00059 - 95 0.034 13.4 0.0 1 1 9.6e-06 0.034 13.4 0.0 248 286 57 94 23 95 0.80 CPSF A subunit region ATPase PF06745.13 231 pNC_022355_00059 - 95 0.048 13.0 0.2 1 1 1.4e-05 0.049 13.0 0.2 73 152 7 87 1 94 0.74 KaiC TipAS PF07739.13 117 pNC_022355_00059 - 95 0.061 13.9 1.5 1 1 0.00033 1.2 9.7 1.9 27 96 5 80 1 92 0.80 TipAS antibiotic-recognition domain 3HCDH PF00725.22 97 pNC_022355_00059 - 95 0.091 13.4 0.2 1 1 3.8e-05 0.14 12.8 0.2 7 65 36 93 33 95 0.91 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DUF4942 PF13708.6 199 pNC_022355_00059 - 95 0.15 12.0 0.0 1 1 7.1e-05 0.26 11.3 0.0 22 74 36 87 33 93 0.88 Domain of unknown function (DUF4942) PNP_UDP_1 PF01048.20 234 pNC_022355_00060 - 256 7.6e-29 100.6 0.0 1 1 4.8e-33 8.7e-29 100.4 0.0 3 219 34 237 32 255 0.86 Phosphorylase superfamily DUF4111 PF13427.6 103 pNC_022355_00061 - 218 3.1e-17 62.6 0.0 1 3 0.56 2.5e+03 -1.3 0.0 60 80 3 23 2 25 0.81 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pNC_022355_00061 - 218 3.1e-17 62.6 0.0 2 3 1.5 6.8e+03 -2.7 0.0 8 22 52 66 50 72 0.73 Domain of unknown function (DUF4111) DUF4111 PF13427.6 103 pNC_022355_00061 - 218 3.1e-17 62.6 0.0 3 3 3.9e-20 1.8e-16 60.2 0.0 1 67 148 214 148 217 0.97 Domain of unknown function (DUF4111) Polbeta PF18765.1 93 pNC_022355_00061 - 218 8.7e-10 38.6 0.0 1 2 8.5e-13 3.8e-09 36.5 0.0 8 74 22 92 11 97 0.77 Polymerase beta, Nucleotidyltransferase Polbeta PF18765.1 93 pNC_022355_00061 - 218 8.7e-10 38.6 0.0 2 2 0.33 1.5e+03 -0.6 0.0 17 42 103 134 98 153 0.72 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 95 pNC_022355_00061 - 218 2.4e-06 27.8 0.0 1 1 1e-09 4.5e-06 26.9 0.0 14 76 25 89 11 107 0.76 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 199 pNC_022355_00061 - 218 0.00015 21.7 0.0 1 1 4.6e-08 0.00021 21.3 0.0 88 138 21 71 2 84 0.86 Adenylate cyclase NT domain DUF4111 PF13427.6 103 pNC_022355_00062 - 55 0.0023 18.0 0.0 1 1 1.5e-07 0.0027 17.9 0.0 69 103 13 47 7 47 0.95 Domain of unknown function (DUF4111) AAA_18 PF13238.6 130 pNC_022355_00063 - 181 5.7e-14 52.8 0.0 1 1 1.6e-16 7.6e-14 52.4 0.0 1 124 7 135 7 141 0.86 AAA domain CPT PF07931.12 174 pNC_022355_00063 - 181 3e-09 37.0 0.0 1 1 1.2e-11 5.8e-09 36.0 0.0 1 172 4 172 4 174 0.81 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 143 pNC_022355_00063 - 181 6.4e-09 36.1 0.0 1 1 1.9e-11 9.4e-09 35.6 0.0 2 136 7 144 6 146 0.81 AAA domain Zeta_toxin PF06414.12 199 pNC_022355_00063 - 181 1.5e-08 34.2 0.0 1 1 7.5e-11 3.6e-08 32.9 0.0 18 162 6 140 2 174 0.78 Zeta toxin AAA PF00004.29 132 pNC_022355_00063 - 181 8.7e-06 26.2 0.2 1 2 1.7e-07 8.1e-05 23.1 0.0 2 34 8 41 7 83 0.78 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pNC_022355_00063 - 181 8.7e-06 26.2 0.2 2 2 0.71 3.5e+02 1.6 0.0 104 131 108 135 56 136 0.84 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 163 pNC_022355_00063 - 181 0.0001 22.6 0.1 1 2 8.3e-07 0.0004 20.7 0.0 2 62 7 71 6 85 0.62 AAA domain AAA_28 PF13521.6 163 pNC_022355_00063 - 181 0.0001 22.6 0.1 2 2 2.6 1.2e+03 -0.4 0.1 137 137 133 133 91 177 0.52 AAA domain AAA_17 PF13207.6 136 pNC_022355_00063 - 181 0.0002 21.8 0.0 1 1 7.1e-07 0.00035 21.0 0.0 1 128 10 131 10 139 0.78 AAA domain AAA_22 PF13401.6 137 pNC_022355_00063 - 181 0.00034 20.9 0.0 1 2 2e-06 0.00099 19.4 0.0 4 33 3 32 1 84 0.83 AAA domain AAA_22 PF13401.6 137 pNC_022355_00063 - 181 0.00034 20.9 0.0 2 2 3.7 1.8e+03 -0.9 0.0 62 83 121 141 96 178 0.64 AAA domain AAA_14 PF13173.6 131 pNC_022355_00063 - 181 0.00043 20.3 0.0 1 1 1.4e-06 0.00066 19.7 0.0 2 127 4 141 3 145 0.72 AAA domain RuvB_N PF05496.12 159 pNC_022355_00063 - 181 0.0016 18.2 0.1 1 2 1.2e-05 0.0057 16.4 0.0 36 60 7 31 3 49 0.85 Holliday junction DNA helicase RuvB P-loop domain RuvB_N PF05496.12 159 pNC_022355_00063 - 181 0.0016 18.2 0.1 2 2 3.1 1.5e+03 -1.2 0.0 96 114 111 129 104 167 0.72 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 146 pNC_022355_00063 - 181 0.0024 18.2 0.0 1 1 8.6e-06 0.0042 17.4 0.0 9 35 3 29 1 77 0.87 AAA domain ABC_tran PF00005.27 137 pNC_022355_00063 - 181 0.0031 18.0 0.1 1 1 8.5e-06 0.0041 17.6 0.1 9 43 2 35 1 133 0.85 ABC transporter AAA_16 PF13191.6 170 pNC_022355_00063 - 181 0.0045 17.4 0.0 1 1 1.9e-05 0.0092 16.4 0.0 22 62 2 43 1 76 0.75 AAA ATPase domain KTI12 PF08433.10 272 pNC_022355_00063 - 181 0.0048 16.4 0.0 1 2 2e-05 0.0095 15.4 0.0 3 42 6 44 5 87 0.74 Chromatin associated protein KTI12 KTI12 PF08433.10 272 pNC_022355_00063 - 181 0.0048 16.4 0.0 2 2 4.5 2.2e+03 -2.2 0.0 263 263 137 137 104 174 0.57 Chromatin associated protein KTI12 DUF2075 PF09848.9 363 pNC_022355_00063 - 181 0.005 16.1 0.2 1 1 1.6e-05 0.0077 15.5 0.1 2 29 5 32 4 68 0.84 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.20 158 pNC_022355_00063 - 181 0.0076 16.2 0.0 1 2 0.00023 0.11 12.3 0.0 1 79 3 84 3 111 0.64 Adenylylsulphate kinase APS_kinase PF01583.20 158 pNC_022355_00063 - 181 0.0076 16.2 0.0 2 2 0.37 1.8e+02 1.9 0.0 44 74 118 148 98 155 0.85 Adenylylsulphate kinase AAA_30 PF13604.6 192 pNC_022355_00063 - 181 0.0092 15.7 0.1 1 1 3.2e-05 0.016 15.0 0.1 17 40 3 26 1 39 0.82 AAA domain AAA_24 PF13479.6 197 pNC_022355_00063 - 181 0.0096 15.7 0.3 1 1 2e-05 0.0097 15.6 0.3 3 23 5 30 3 171 0.85 AAA domain Ploopntkinase1 PF18748.1 196 pNC_022355_00063 - 181 0.0099 15.4 0.0 1 2 0.087 42 3.6 0.0 16 41 3 28 1 41 0.82 P-loop Nucleotide Kinase1 Ploopntkinase1 PF18748.1 196 pNC_022355_00063 - 181 0.0099 15.4 0.0 2 2 0.00091 0.44 10.0 0.0 93 164 72 143 54 154 0.81 P-loop Nucleotide Kinase1 T2SSE PF00437.20 273 pNC_022355_00063 - 181 0.011 14.8 0.0 1 1 3.4e-05 0.016 14.3 0.0 130 158 5 33 1 75 0.82 Type II/IV secretion system protein ATPase PF06745.13 231 pNC_022355_00063 - 181 0.011 15.1 1.2 1 2 3.6e-05 0.017 14.5 0.1 18 37 3 22 1 35 0.87 KaiC ATPase PF06745.13 231 pNC_022355_00063 - 181 0.011 15.1 1.2 2 2 2.3 1.1e+03 -1.3 0.1 98 129 123 159 100 175 0.49 KaiC Rad17 PF03215.15 186 pNC_022355_00063 - 181 0.012 15.5 0.0 1 2 8.1e-05 0.039 13.9 0.0 45 71 4 30 1 40 0.88 Rad17 P-loop domain Rad17 PF03215.15 186 pNC_022355_00063 - 181 0.012 15.5 0.0 2 2 3.2 1.5e+03 -1.1 0.0 113 146 110 145 96 169 0.62 Rad17 P-loop domain SRP54 PF00448.22 196 pNC_022355_00063 - 181 0.016 14.8 0.1 1 1 6.3e-05 0.031 13.9 0.1 3 40 6 42 4 49 0.84 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 168 pNC_022355_00063 - 181 0.021 14.7 1.0 1 2 0.0001 0.049 13.5 0.3 2 22 7 27 6 35 0.85 NTPase NTPase_1 PF03266.15 168 pNC_022355_00063 - 181 0.021 14.7 1.0 2 2 2.1 1e+03 -0.5 0.0 115 136 97 118 58 172 0.59 NTPase dNK PF01712.19 204 pNC_022355_00063 - 181 0.034 14.0 0.2 1 2 0.0019 0.94 9.3 0.0 1 52 7 75 7 77 0.66 Deoxynucleoside kinase dNK PF01712.19 204 pNC_022355_00063 - 181 0.034 14.0 0.2 2 2 0.19 94 2.8 0.2 118 162 102 143 92 175 0.70 Deoxynucleoside kinase Sigma54_activat PF00158.26 168 pNC_022355_00063 - 181 0.035 13.8 0.0 1 1 0.00014 0.066 12.9 0.0 25 68 7 57 1 89 0.76 Sigma-54 interaction domain TIP49 PF06068.13 351 pNC_022355_00063 - 181 0.035 13.3 0.2 1 2 0.00023 0.11 11.6 0.0 50 77 4 31 1 46 0.84 TIP49 P-loop domain TIP49 PF06068.13 351 pNC_022355_00063 - 181 0.035 13.3 0.2 2 2 1.4 7e+02 -0.8 0.1 148 178 126 156 105 172 0.75 TIP49 P-loop domain ATPase_2 PF01637.18 233 pNC_022355_00063 - 181 0.039 13.8 0.3 1 2 0.0045 2.2 8.2 0.0 19 49 3 32 1 50 0.75 ATPase domain predominantly from Archaea ATPase_2 PF01637.18 233 pNC_022355_00063 - 181 0.039 13.8 0.3 2 2 0.085 41 4.0 0.1 48 97 102 150 92 179 0.53 ATPase domain predominantly from Archaea DnaB_C PF03796.15 255 pNC_022355_00063 - 181 0.06 12.7 0.4 1 2 0.00026 0.13 11.6 0.0 17 47 2 32 1 42 0.83 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pNC_022355_00063 - 181 0.06 12.7 0.4 2 2 2.6 1.3e+03 -1.5 0.1 84 91 136 143 98 179 0.39 DnaB-like helicase C terminal domain MKT1_N PF12247.8 90 pNC_022355_00063 - 181 0.069 13.5 0.0 1 1 0.00057 0.28 11.6 0.0 14 51 39 74 36 147 0.88 Temperature dependent protein affecting M2 dsRNA replication AAA_11 PF13086.6 261 pNC_022355_00063 - 181 0.073 12.8 1.5 1 1 0.00025 0.12 12.1 1.5 16 42 3 29 1 179 0.85 AAA domain PhoH PF02562.16 205 pNC_022355_00063 - 181 0.076 12.5 0.1 1 1 0.0003 0.14 11.5 0.1 18 49 3 34 1 36 0.84 PhoH-like protein RNA_helicase PF00910.22 107 pNC_022355_00063 - 181 0.089 13.2 0.0 1 1 0.00032 0.16 12.4 0.0 1 24 7 31 7 78 0.68 RNA helicase NACHT PF05729.12 166 pNC_022355_00063 - 181 0.1 12.5 0.0 1 1 0.00036 0.17 11.8 0.0 1 40 5 45 5 73 0.78 NACHT domain ATP-synt_ab PF00006.25 213 pNC_022355_00063 - 181 0.14 11.8 0.0 1 1 0.00028 0.14 11.8 0.0 13 45 3 34 1 178 0.82 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 181 pNC_022355_00063 - 181 0.18 11.3 0.7 1 2 0.00058 0.28 10.7 0.1 31 63 2 34 1 46 0.80 P-loop containing dynein motor region AAA_7 PF12775.7 181 pNC_022355_00063 - 181 0.18 11.3 0.7 2 2 8.9 4.3e+03 -3.0 0.0 65 82 156 173 132 176 0.64 P-loop containing dynein motor region Cytidylate_kin2 PF13189.6 179 pNC_022355_00063 - 181 0.2 11.8 1.5 1 2 0.038 19 5.4 0.1 1 23 6 28 6 36 0.91 Cytidylate kinase-like family Cytidylate_kin2 PF13189.6 179 pNC_022355_00063 - 181 0.2 11.8 1.5 2 2 0.026 12 5.9 0.1 108 147 99 138 28 143 0.73 Cytidylate kinase-like family APH PF01636.23 240 pNC_022355_00064 - 305 8.7e-24 84.8 0.0 1 1 4.3e-27 1.3e-23 84.2 0.0 4 215 26 237 24 260 0.83 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 288 pNC_022355_00064 - 305 2.9e-06 26.7 0.1 1 1 3.4e-09 1e-05 24.9 0.1 23 260 25 267 6 293 0.75 Fructosamine kinase Choline_kinase PF01633.20 213 pNC_022355_00064 - 305 0.00018 21.2 0.0 1 1 9e-08 0.00027 20.6 0.0 107 187 152 233 137 260 0.75 Choline/ethanolamine kinase APH_6_hur PF04655.14 252 pNC_022355_00064 - 305 0.014 14.8 0.0 1 1 6.6e-06 0.02 14.3 0.0 126 197 154 230 136 246 0.72 Aminoglycoside/hydroxyurea antibiotic resistance kinase TMEM95 PF15203.6 151 pNC_022355_00064 - 305 0.044 13.4 0.4 1 1 2.4e-05 0.072 12.7 0.4 68 119 244 294 238 304 0.88 TMEM95 family EcKinase PF02958.20 294 pNC_022355_00064 - 305 0.1 11.9 0.0 1 1 4.9e-05 0.15 11.4 0.0 195 260 171 231 141 261 0.72 Ecdysteroid kinase Peptidase_C15 PF01470.17 202 pNC_022355_00065 - 139 2.2e-51 174.9 0.1 1 1 1.4e-55 2.4e-51 174.8 0.1 1 137 1 136 1 138 0.99 Pyroglutamyl peptidase Adenyl_transf PF04439.12 279 pNC_022355_00066 - 171 4.8e-56 189.9 1.4 1 1 3.3e-60 5.9e-56 189.6 1.4 140 278 8 145 2 146 0.98 Streptomycin adenylyltransferase Acetyltransf_1 PF00583.25 117 pNC_022355_00067 - 180 3.8e-20 72.3 0.1 1 1 2.3e-23 5.3e-20 71.8 0.1 17 117 51 153 35 153 0.79 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 76 pNC_022355_00067 - 180 1.2e-13 51.2 0.1 1 1 9.1e-17 2e-13 50.5 0.1 4 75 73 154 70 155 0.77 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 127 pNC_022355_00067 - 180 2.7e-12 46.7 0.0 1 1 1.6e-15 3.7e-12 46.3 0.0 23 107 64 154 46 161 0.88 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 155 pNC_022355_00067 - 180 1.1e-09 38.6 1.1 1 1 6e-13 1.3e-09 38.3 1.1 24 138 50 157 27 174 0.78 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 138 pNC_022355_00067 - 180 0.0011 19.7 0.0 1 1 6.1e-07 0.0014 19.4 0.0 50 138 69 154 28 154 0.72 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 80 pNC_022355_00067 - 180 0.0011 19.0 0.0 1 1 1.2e-06 0.0027 17.8 0.0 6 58 79 130 73 132 0.85 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 128 pNC_022355_00067 - 180 0.015 15.4 0.0 1 1 2.6e-05 0.059 13.5 0.0 21 126 50 154 43 156 0.72 Acetyltransferase (GNAT) domain FR47 PF08445.10 86 pNC_022355_00067 - 180 0.038 14.0 0.0 1 1 2.9e-05 0.064 13.2 0.0 21 78 96 154 91 162 0.82 FR47-like protein APH PF01636.23 240 pNC_022355_00068 - 264 2.8e-26 92.9 0.0 1 1 5.4e-30 3.2e-26 92.7 0.0 32 239 52 256 25 257 0.89 Phosphotransferase enzyme family Choline_kinase PF01633.20 213 pNC_022355_00068 - 264 0.0021 17.7 0.0 1 1 5.3e-07 0.0032 17.1 0.0 134 198 171 236 105 244 0.79 Choline/ethanolamine kinase RIO1 PF01163.22 188 pNC_022355_00068 - 264 0.019 14.5 0.0 1 2 0.0029 18 4.9 0.0 48 116 50 120 26 128 0.66 RIO1 family RIO1 PF01163.22 188 pNC_022355_00068 - 264 0.019 14.5 0.0 2 2 0.00039 2.3 7.8 0.0 127 152 186 212 146 230 0.80 RIO1 family zf-HC2 PF13490.6 35 pNC_022355_00069 - 221 3.2e-06 27.3 2.7 1 1 1.2e-09 6.9e-06 26.2 2.7 4 35 11 42 9 42 0.97 Putative zinc-finger Glyco_hydro_100 PF12899.7 435 pNC_022355_00069 - 221 0.11 11.1 0.0 1 2 5.6e-05 0.34 9.5 0.0 29 75 3 50 1 72 0.86 Alkaline and neutral invertase Glyco_hydro_100 PF12899.7 435 pNC_022355_00069 - 221 0.11 11.1 0.0 2 2 0.094 5.6e+02 -1.1 0.0 265 319 107 163 99 169 0.82 Alkaline and neutral invertase TetR_C_11 PF16859.5 113 pNC_022355_00069 - 221 0.15 12.4 0.7 1 1 3.5e-05 0.21 11.9 0.7 12 111 12 110 11 112 0.88 Tetracyclin repressor-like, C-terminal domain Sigma70_r4_2 PF08281.12 54 pNC_022355_00070 - 150 2.5e-07 30.3 0.0 1 1 6.3e-11 3.8e-07 29.7 0.0 1 54 87 140 87 140 0.97 Sigma-70, region 4 Sigma70_r4 PF04545.16 50 pNC_022355_00070 - 150 3.8e-06 26.3 0.0 1 1 1.1e-09 6.3e-06 25.6 0.0 1 48 93 140 93 142 0.93 Sigma-70, region 4 HTH_38 PF13936.6 44 pNC_022355_00070 - 150 0.021 14.6 0.0 1 1 6.9e-06 0.041 13.6 0.0 3 33 95 125 93 126 0.92 Helix-turn-helix domain Reticulon PF02453.17 157 pNZ_AAFJ01000010_00004 - 71 0.011 15.7 3.4 1 1 6.2e-07 0.011 15.7 3.4 101 143 3 45 1 63 0.95 Reticulon TK PF00265.18 177 pNZ_AAFJ01000010_00005 - 167 7e-20 71.6 1.2 1 1 2.7e-23 1.6e-19 70.5 1.2 3 177 2 162 1 162 0.81 Thymidine kinase AAA_14 PF13173.6 131 pNZ_AAFJ01000010_00005 - 167 0.003 17.6 0.3 1 1 6.7e-07 0.004 17.2 0.3 5 99 3 103 1 117 0.58 AAA domain Terminase_6 PF03237.15 215 pNZ_AAFJ01000010_00005 - 167 0.0088 15.7 0.4 1 1 5.1e-06 0.03 14.0 0.4 2 57 5 64 4 120 0.78 Terminase-like family FcoT PF10862.8 156 pNZ_AAFJ01000010_00006 - 86 0.031 13.9 0.1 1 1 5.7e-06 0.034 13.7 0.1 69 125 26 83 13 86 0.83 FcoT-like thioesterase domain ECH_2 PF16113.5 334 pNZ_AAFJ01000010_00006 - 86 0.044 13.3 0.5 1 1 7.5e-06 0.045 13.3 0.5 166 240 5 80 1 86 0.77 Enoyl-CoA hydratase/isomerase EF-hand_7 PF13499.6 71 pNZ_AAFJ01000010_00006 - 86 0.068 13.6 0.2 1 1 0.00044 2.6 8.5 0.2 42 70 28 75 6 76 0.55 EF-hand domain pair DUF3973 PF13119.6 40 pNZ_AAFJ01000010_00007 - 73 0.088 12.9 2.7 1 2 0.018 3.2e+02 1.5 0.0 12 23 15 26 11 38 0.70 Domain of unknown function (DUF3973) DUF3973 PF13119.6 40 pNZ_AAFJ01000010_00007 - 73 0.088 12.9 2.7 2 2 1.9e-05 0.35 11.0 1.3 1 28 41 66 41 73 0.86 Domain of unknown function (DUF3973) Toprim_2 PF13155.6 90 pNZ_AAFJ01000010_00010 - 341 2.2e-11 44.0 0.0 1 1 9.5e-15 4.3e-11 43.1 0.0 1 90 238 328 238 328 0.90 Toprim-like Toprim_3 PF13362.6 95 pNZ_AAFJ01000010_00010 - 341 4.2e-05 23.8 0.0 1 1 1.9e-08 8.4e-05 22.9 0.0 2 90 237 329 236 332 0.76 Toprim domain zf-CHC2 PF01807.20 98 pNZ_AAFJ01000010_00010 - 341 0.0061 16.4 0.1 1 2 8.3e-06 0.037 13.8 0.1 48 92 3 46 1 51 0.84 CHC2 zinc finger zf-CHC2 PF01807.20 98 pNZ_AAFJ01000010_00010 - 341 0.0061 16.4 0.1 2 2 0.37 1.6e+03 -1.1 0.0 47 64 276 293 271 300 0.80 CHC2 zinc finger DUF3854 PF12965.7 130 pNZ_AAFJ01000010_00010 - 341 0.094 12.7 0.0 1 1 6.4e-05 0.29 11.1 0.0 68 126 279 331 267 334 0.85 Domain of unknown function (DUF3854) CSN8_PSD8_EIF3K PF10075.9 144 pNZ_AAFJ01000010_00011 - 135 0.31 11.0 4.2 1 2 0.018 3.3e+02 1.2 0.2 54 81 8 35 2 47 0.56 CSN8/PSMD8/EIF3K family CSN8_PSD8_EIF3K PF10075.9 144 pNZ_AAFJ01000010_00011 - 135 0.31 11.0 4.2 2 2 1.6e-05 0.29 11.1 0.8 41 102 73 127 35 130 0.86 CSN8/PSMD8/EIF3K family Peptidase_C39 PF03412.15 133 pNZ_AAFJ01000010_00015 - 197 2.5e-17 62.9 0.0 1 1 3.7e-21 3.3e-17 62.5 0.0 2 124 33 162 32 176 0.81 Peptidase C39 family Peptidase_C70 PF12385.8 145 pNZ_AAFJ01000010_00015 - 197 3e-05 24.0 0.0 1 1 4.7e-09 4.2e-05 23.6 0.0 11 131 37 147 20 158 0.79 Papain-like cysteine protease AvrRpt2 Phage_integrase PF00589.22 172 pNZ_AAFJ01000010_00017 - 314 2.8e-20 72.8 2.1 1 1 1.5e-23 4.4e-20 72.2 2.1 2 170 131 302 130 304 0.85 Phage integrase family Phage_int_SAM_1 PF02899.17 84 pNZ_AAFJ01000010_00017 - 314 5.5e-05 23.4 2.7 1 3 2.7e-05 0.081 13.2 0.1 3 60 18 75 16 79 0.87 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pNZ_AAFJ01000010_00017 - 314 5.5e-05 23.4 2.7 2 3 0.00047 1.4 9.3 0.0 10 37 78 104 76 110 0.88 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 84 pNZ_AAFJ01000010_00017 - 314 5.5e-05 23.4 2.7 3 3 2.4 7.2e+03 -2.6 0.1 37 59 125 147 118 153 0.61 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 99 pNZ_AAFJ01000010_00017 - 314 0.00022 21.5 8.0 1 2 7.5e-08 0.00022 21.5 8.0 7 80 17 98 11 105 0.84 Phage integrase SAM-like domain Phage_int_SAM_5 PF13102.6 99 pNZ_AAFJ01000010_00017 - 314 0.00022 21.5 8.0 2 2 0.47 1.4e+03 -0.3 0.3 4 17 218 231 210 293 0.72 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 85 pNZ_AAFJ01000010_00017 - 314 0.0026 18.2 5.5 1 2 8.6e-07 0.0026 18.2 5.5 2 79 16 102 15 108 0.89 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 85 pNZ_AAFJ01000010_00017 - 314 0.0026 18.2 5.5 2 2 2.1 6.4e+03 -2.3 0.1 20 44 188 211 172 233 0.57 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.7 149 pNZ_AAFJ01000010_00017 - 314 0.0035 17.5 0.4 1 1 2.3e-06 0.0067 16.5 0.4 30 148 156 271 120 272 0.76 Integrase Phage_int_SAM_6 PF18644.1 132 pNZ_AAFJ01000010_00017 - 314 3.7 7.6 16.4 1 4 0.00026 0.77 9.8 0.9 3 46 5 49 3 63 0.75 Phage integrase SAM-like domain Phage_int_SAM_6 PF18644.1 132 pNZ_AAFJ01000010_00017 - 314 3.7 7.6 16.4 2 4 0.00083 2.5 8.1 2.6 88 132 54 105 33 105 0.66 Phage integrase SAM-like domain Phage_int_SAM_6 PF18644.1 132 pNZ_AAFJ01000010_00017 - 314 3.7 7.6 16.4 3 4 1.5 4.5e+03 -2.4 0.0 37 46 138 147 113 196 0.62 Phage integrase SAM-like domain Phage_int_SAM_6 PF18644.1 132 pNZ_AAFJ01000010_00017 - 314 3.7 7.6 16.4 4 4 1.2 3.5e+03 -2.1 0.3 29 72 255 299 246 308 0.60 Phage integrase SAM-like domain HMG-CoA_red PF00368.18 367 pNZ_AAFJ01000010_00018 - 74 0.083 11.9 0.0 1 1 5.8e-06 0.1 11.6 0.0 166 202 29 65 27 73 0.91 Hydroxymethylglutaryl-coenzyme A reductase WGR PF05406.15 80 pNZ_AAFJ01000010_00019 - 75 0.00012 22.0 0.3 1 1 4e-08 0.00014 21.8 0.3 6 73 7 74 2 75 0.88 WGR domain Latarcin PF10279.9 81 pNZ_AAFJ01000010_00019 - 75 0.01 16.2 0.1 1 1 4.2e-06 0.015 15.7 0.1 48 70 47 69 45 74 0.84 Latarcin precursor Tantalus PF15386.6 59 pNZ_AAFJ01000010_00019 - 75 0.047 13.8 0.1 1 2 1.3e-05 0.047 13.8 0.1 15 47 28 60 24 64 0.88 Drosophila Tantalus-like Tantalus PF15386.6 59 pNZ_AAFJ01000010_00019 - 75 0.047 13.8 0.1 2 2 0.62 2.2e+03 -1.2 0.7 6 14 64 72 61 73 0.74 Drosophila Tantalus-like PPR_2 PF13041.6 50 pNZ_AAFJ01000010_00019 - 75 0.14 12.4 0.9 1 1 6.5e-05 0.23 11.7 0.9 18 35 54 71 52 72 0.92 PPR repeat family PPR PF01535.20 31 pNZ_AAFJ01000010_00019 - 75 0.23 11.8 1.6 1 2 2.6 9.3e+03 -2.7 0.0 22 27 26 31 21 35 0.71 PPR repeat PPR PF01535.20 31 pNZ_AAFJ01000010_00019 - 75 0.23 11.8 1.6 2 2 8.7e-05 0.31 11.4 0.7 15 31 54 70 54 70 0.90 PPR repeat HD PF01966.22 122 pNZ_AAFJ01000010_00021 - 539 1.8e-10 41.1 0.9 1 1 4e-14 3.6e-10 40.1 0.9 3 99 227 335 225 395 0.81 HD domain HD_6 PF18019.1 196 pNZ_AAFJ01000010_00021 - 539 0.029 14.5 0.1 1 1 6.9e-06 0.062 13.4 0.1 45 135 241 324 218 370 0.67 HD domain TrwB_AAD_bind PF10412.9 386 pNZ_AAFJ01000010_00022 - 459 4e-17 62.2 0.0 1 1 5e-20 6.4e-17 61.5 0.0 10 323 44 387 38 422 0.78 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 469 pNZ_AAFJ01000010_00022 - 459 2e-15 56.6 0.5 1 1 2.1e-18 2.7e-15 56.2 0.5 40 384 33 387 7 405 0.81 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pNZ_AAFJ01000010_00022 - 459 1.3e-10 41.3 0.1 1 1 2.1e-13 2.7e-10 40.3 0.1 3 83 311 390 309 421 0.90 TraM recognition site of TraD and TraG DUF87 PF01935.17 227 pNZ_AAFJ01000010_00022 - 459 1.2e-05 25.6 0.5 1 2 2.3e-08 2.9e-05 24.3 0.1 12 152 39 205 27 288 0.61 Helicase HerA, central domain DUF87 PF01935.17 227 pNZ_AAFJ01000010_00022 - 459 1.2e-05 25.6 0.5 2 2 1.7 2.1e+03 -1.5 0.0 184 200 361 377 303 439 0.57 Helicase HerA, central domain AAA_10 PF12846.7 362 pNZ_AAFJ01000010_00022 - 459 1.3e-05 24.3 0.3 1 2 9.7e-06 0.012 14.5 0.0 20 71 48 98 44 234 0.74 AAA-like domain AAA_10 PF12846.7 362 pNZ_AAFJ01000010_00022 - 459 1.3e-05 24.3 0.3 2 2 0.0015 1.9 7.3 0.0 263 312 326 382 320 391 0.84 AAA-like domain DUF853 PF05872.12 504 pNZ_AAFJ01000010_00022 - 459 0.0034 16.0 0.0 1 2 5.9e-06 0.0076 14.9 0.0 14 67 40 95 28 125 0.78 Bacterial protein of unknown function (DUF853) DUF853 PF05872.12 504 pNZ_AAFJ01000010_00022 - 459 0.0034 16.0 0.0 2 2 2.8 3.6e+03 -3.9 0.0 213 265 262 316 258 320 0.65 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.6 137 pNZ_AAFJ01000010_00022 - 459 0.007 16.6 0.0 1 1 1.8e-05 0.023 15.0 0.0 4 29 48 73 45 109 0.85 AAA domain AAA_16 PF13191.6 170 pNZ_AAFJ01000010_00022 - 459 0.016 15.6 0.0 1 3 6.1e-05 0.078 13.4 0.0 23 61 48 88 43 112 0.68 AAA ATPase domain AAA_16 PF13191.6 170 pNZ_AAFJ01000010_00022 - 459 0.016 15.6 0.0 2 3 5.2 6.7e+03 -2.7 0.0 7 7 189 189 147 223 0.52 AAA ATPase domain AAA_16 PF13191.6 170 pNZ_AAFJ01000010_00022 - 459 0.016 15.6 0.0 3 3 3.2 4.1e+03 -2.0 0.0 106 129 341 372 275 378 0.65 AAA ATPase domain ATPase_2 PF01637.18 233 pNZ_AAFJ01000010_00022 - 459 0.018 14.9 0.1 1 1 5e-05 0.064 13.2 0.1 21 57 50 86 43 241 0.85 ATPase domain predominantly from Archaea ABC_tran PF00005.27 137 pNZ_AAFJ01000010_00022 - 459 0.034 14.7 0.1 1 1 7.6e-05 0.097 13.2 0.1 15 80 53 171 47 350 0.76 ABC transporter Zeta_toxin PF06414.12 199 pNZ_AAFJ01000010_00022 - 459 0.042 13.1 0.0 1 1 6.8e-05 0.087 12.1 0.0 20 51 53 85 43 98 0.85 Zeta toxin DUF1548 PF07579.11 135 pNZ_AAFJ01000010_00022 - 459 0.11 12.8 1.9 1 2 0.00034 0.44 10.9 0.2 54 128 194 270 170 276 0.80 Domain of Unknown Function (DUF1548) DUF1548 PF07579.11 135 pNZ_AAFJ01000010_00022 - 459 0.11 12.8 1.9 2 2 0.71 9.1e+02 0.1 0.1 23 75 276 331 271 355 0.73 Domain of Unknown Function (DUF1548) FtsK_SpoIIIE PF01580.18 243 pNZ_AAFJ01000010_00022 - 459 0.13 11.6 0.0 1 1 0.00022 0.28 10.5 0.0 35 60 43 70 15 95 0.82 FtsK/SpoIIIE family ArlS_N PF18719.1 128 pNZ_AAFJ01000010_00022 - 459 0.91 9.7 4.0 1 2 0.25 3.2e+02 1.5 0.6 25 99 180 248 170 274 0.74 ArlS sensor domain ArlS_N PF18719.1 128 pNZ_AAFJ01000010_00022 - 459 0.91 9.7 4.0 2 2 0.0016 2.1 8.6 0.2 17 73 322 379 307 386 0.77 ArlS sensor domain OSTMP1 PF09777.9 234 pNZ_AAFJ01000010_00023 - 269 1.2 8.5 3.2 1 2 0.00034 6.1 6.2 0.3 184 221 118 157 108 166 0.86 Osteopetrosis-associated transmembrane protein 1 precursor OSTMP1 PF09777.9 234 pNZ_AAFJ01000010_00023 - 269 1.2 8.5 3.2 2 2 0.0034 61 2.9 0.2 192 228 233 267 203 269 0.73 Osteopetrosis-associated transmembrane protein 1 precursor MnmE_helical PF12631.7 206 pNZ_AAFJ01000010_00024 - 221 0.44 10.7 1.7 1 1 3.9e-05 0.7 10.0 1.7 30 90 16 74 8 217 0.69 MnmE helical domain HTH_3 PF01381.22 55 pNZ_AAFJ01000010_00025 - 86 1.2e-10 41.3 0.0 1 1 4.3e-14 1.9e-10 40.6 0.0 1 55 13 67 13 67 0.97 Helix-turn-helix HTH_19 PF12844.7 65 pNZ_AAFJ01000010_00025 - 86 1.2e-08 34.8 0.0 1 1 3.3e-12 1.5e-08 34.5 0.0 1 64 10 72 10 73 0.97 Helix-turn-helix domain HTH_31 PF13560.6 64 pNZ_AAFJ01000010_00025 - 86 4.5e-05 23.7 0.0 1 2 2.3e-08 0.0001 22.5 0.0 2 47 9 53 8 67 0.89 Helix-turn-helix domain HTH_31 PF13560.6 64 pNZ_AAFJ01000010_00025 - 86 4.5e-05 23.7 0.0 2 2 0.57 2.5e+03 -1.1 0.0 31 47 64 80 61 83 0.70 Helix-turn-helix domain APG12 PF04110.13 87 pNZ_AAFJ01000010_00025 - 86 0.1 13.0 0.0 1 1 2.9e-05 0.13 12.7 0.0 34 78 24 68 8 72 0.82 Ubiquitin-like autophagy protein Apg12 AAA_19 PF13245.6 146 pNZ_AAFJ01000010_00026 - 487 6.3e-14 52.5 0.2 1 2 3.1e-15 4.6e-12 46.5 0.0 6 146 12 233 6 233 0.79 AAA domain AAA_19 PF13245.6 146 pNZ_AAFJ01000010_00026 - 487 6.3e-14 52.5 0.2 2 2 0.045 68 3.8 0.1 54 126 309 383 263 391 0.68 AAA domain UvrD-helicase PF00580.21 315 pNZ_AAFJ01000010_00026 - 487 6.5e-12 45.6 17.8 1 3 1.7e-05 0.026 14.1 0.2 1 33 3 36 3 125 0.77 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 pNZ_AAFJ01000010_00026 - 487 6.5e-12 45.6 17.8 2 3 5.5e-13 8.3e-10 38.7 1.7 246 311 182 244 129 250 0.72 UvrD/REP helicase N-terminal domain UvrD-helicase PF00580.21 315 pNZ_AAFJ01000010_00026 - 487 6.5e-12 45.6 17.8 3 3 1.5 2.3e+03 -2.2 3.8 168 231 318 439 245 485 0.47 UvrD/REP helicase N-terminal domain Viral_helicase1 PF01443.18 234 pNZ_AAFJ01000010_00026 - 487 6.1e-11 42.5 0.3 1 3 0.0024 3.6 7.3 0.0 2 55 20 75 19 82 0.72 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 pNZ_AAFJ01000010_00026 - 487 6.1e-11 42.5 0.3 2 3 1.9e-08 2.8e-05 24.0 0.1 44 198 175 330 133 332 0.73 Viral (Superfamily 1) RNA helicase Viral_helicase1 PF01443.18 234 pNZ_AAFJ01000010_00026 - 487 6.1e-11 42.5 0.3 3 3 0.0018 2.7 7.7 0.0 186 230 409 464 356 467 0.76 Viral (Superfamily 1) RNA helicase UvrD_C PF13361.6 349 pNZ_AAFJ01000010_00026 - 487 4.3e-10 39.5 16.6 1 2 0.2 3e+02 0.6 0.1 260 294 41 75 30 76 0.81 UvrD-like helicase C-terminal domain UvrD_C PF13361.6 349 pNZ_AAFJ01000010_00026 - 487 4.3e-10 39.5 16.6 2 2 3.2e-13 4.7e-10 39.4 12.7 189 345 160 467 101 469 0.68 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 52 pNZ_AAFJ01000010_00026 - 487 6e-09 35.6 0.0 1 1 3.2e-11 4.8e-08 32.7 0.0 5 50 409 465 406 467 0.88 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 192 pNZ_AAFJ01000010_00026 - 487 8.1e-06 25.7 0.0 1 2 3e-06 0.0045 16.7 0.0 2 79 3 79 2 98 0.71 AAA domain AAA_30 PF13604.6 192 pNZ_AAFJ01000010_00026 - 487 8.1e-06 25.7 0.0 2 2 0.0035 5.2 6.7 0.0 84 161 187 263 154 287 0.69 AAA domain PhoH PF02562.16 205 pNZ_AAFJ01000010_00026 - 487 0.00049 19.6 0.2 1 3 0.0026 3.9 6.9 0.0 6 50 4 43 1 63 0.74 PhoH-like protein PhoH PF02562.16 205 pNZ_AAFJ01000010_00026 - 487 0.00049 19.6 0.2 2 3 0.00031 0.47 9.9 0.0 118 186 191 253 188 268 0.77 PhoH-like protein PhoH PF02562.16 205 pNZ_AAFJ01000010_00026 - 487 0.00049 19.6 0.2 3 3 3.2 4.8e+03 -3.2 0.0 69 92 368 391 366 409 0.77 PhoH-like protein DUF2075 PF09848.9 363 pNZ_AAFJ01000010_00026 - 487 0.02 14.2 0.3 1 2 0.0022 3.2 6.9 0.0 3 53 18 64 16 88 0.81 Uncharacterized conserved protein (DUF2075) DUF2075 PF09848.9 363 pNZ_AAFJ01000010_00026 - 487 0.02 14.2 0.3 2 2 0.0087 13 4.9 0.1 74 183 176 270 138 308 0.75 Uncharacterized conserved protein (DUF2075) Peptidase_M6 PF05547.11 656 pNZ_AAFJ01000010_00026 - 487 0.025 12.9 0.1 1 1 2.5e-05 0.037 12.4 0.1 432 493 176 235 152 259 0.82 Immune inhibitor A peptidase M6 Helicase_RecD PF05127.14 177 pNZ_AAFJ01000010_00026 - 487 0.04 13.8 0.7 1 3 0.063 94 2.8 0.0 2 46 21 65 20 93 0.67 Helicase Helicase_RecD PF05127.14 177 pNZ_AAFJ01000010_00026 - 487 0.04 13.8 0.7 2 3 0.0014 2 8.2 0.0 77 159 179 258 135 267 0.74 Helicase Helicase_RecD PF05127.14 177 pNZ_AAFJ01000010_00026 - 487 0.04 13.8 0.7 3 3 2 3e+03 -2.1 0.0 55 98 431 474 409 475 0.76 Helicase AAA_11 PF13086.6 261 pNZ_AAFJ01000010_00026 - 487 0.11 12.3 0.5 1 3 0.013 19 4.9 0.0 19 64 18 67 4 93 0.64 AAA domain AAA_11 PF13086.6 261 pNZ_AAFJ01000010_00026 - 487 0.11 12.3 0.5 2 3 0.021 31 4.2 0.0 209 253 184 227 180 227 0.84 AAA domain AAA_11 PF13086.6 261 pNZ_AAFJ01000010_00026 - 487 0.11 12.3 0.5 3 3 0.8 1.2e+03 -1.0 0.1 162 206 370 414 253 442 0.55 AAA domain ResIII PF04851.15 171 pNZ_AAFJ01000010_00026 - 487 0.34 10.9 8.2 1 3 4.4e-05 0.065 13.2 1.8 27 84 19 72 4 254 0.77 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pNZ_AAFJ01000010_00026 - 487 0.34 10.9 8.2 2 3 1.7 2.5e+03 -1.7 0.0 72 107 268 306 225 326 0.62 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pNZ_AAFJ01000010_00026 - 487 0.34 10.9 8.2 3 3 2.8 4.1e+03 -2.4 0.1 84 96 376 397 331 428 0.49 Type III restriction enzyme, res subunit Thioredoxin_7 PF13899.6 83 pNZ_AAFJ01000010_00027 - 141 4.1e-05 23.7 0.0 1 1 1.2e-08 5.2e-05 23.4 0.0 8 63 30 85 23 106 0.75 Thioredoxin-like Thioredoxin_2 PF13098.6 109 pNZ_AAFJ01000010_00027 - 141 0.00038 20.9 0.4 1 1 2.5e-07 0.0011 19.4 0.4 4 50 37 79 34 128 0.82 Thioredoxin-like domain Thioredox_DsbH PF03190.15 163 pNZ_AAFJ01000010_00027 - 141 0.047 13.6 0.2 1 1 1.2e-05 0.055 13.4 0.2 29 81 31 83 25 133 0.92 Protein of unknown function, DUF255 Redoxin PF08534.10 147 pNZ_AAFJ01000010_00027 - 141 0.17 11.6 0.0 1 1 4.6e-05 0.2 11.3 0.0 24 70 33 80 24 110 0.85 Redoxin TrbC_Ftype PF09673.10 112 pNZ_AAFJ01000010_00028 - 313 2e-16 60.0 0.0 1 1 7.7e-20 3.5e-16 59.3 0.0 1 112 158 289 158 289 0.85 Type-F conjugative transfer system pilin assembly protein DUF1694 PF07997.11 117 pNZ_AAFJ01000010_00028 - 313 0.0015 18.6 0.5 1 1 1.9e-06 0.0085 16.2 0.5 40 92 134 186 120 192 0.90 Protein of unknown function (DUF1694) DUF3502 PF12010.8 130 pNZ_AAFJ01000010_00028 - 313 0.028 15.0 2.0 1 2 2.4 1.1e+04 -3.0 4.5 69 69 101 101 19 189 0.60 Domain of unknown function (DUF3502) DUF3502 PF12010.8 130 pNZ_AAFJ01000010_00028 - 313 0.028 15.0 2.0 2 2 6.3e-06 0.028 15.0 2.0 51 124 236 308 190 310 0.78 Domain of unknown function (DUF3502) Thioredoxin PF00085.20 103 pNZ_AAFJ01000010_00028 - 313 0.039 14.0 0.3 1 1 2.5e-05 0.11 12.5 0.3 52 94 223 266 212 273 0.82 Thioredoxin TraU PF06834.11 307 pNZ_AAFJ01000010_00029 - 333 9.6e-97 323.9 0.0 1 1 6.1e-101 1.1e-96 323.8 0.0 1 306 34 332 34 333 0.95 TraU protein RhoGAP PF00620.27 152 pNZ_AAFJ01000010_00031 - 199 0.0012 18.7 1.6 1 2 1.3e-07 0.0012 18.7 1.6 24 112 47 132 37 134 0.81 RhoGAP domain RhoGAP PF00620.27 152 pNZ_AAFJ01000010_00031 - 199 0.0012 18.7 1.6 2 2 0.49 4.4e+03 -2.6 0.0 47 55 170 178 135 192 0.49 RhoGAP domain DUF4252 PF14060.6 157 pNZ_AAFJ01000010_00031 - 199 0.32 10.9 8.4 1 2 0.13 1.2e+03 -0.7 0.1 111 125 26 40 4 65 0.47 Domain of unknown function (DUF4252) DUF4252 PF14060.6 157 pNZ_AAFJ01000010_00031 - 199 0.32 10.9 8.4 2 2 9.6e-06 0.086 12.7 4.0 28 94 81 146 72 154 0.84 Domain of unknown function (DUF4252) ALP_N PF17989.1 147 pNZ_AAFJ01000010_00034 - 305 7.7e-13 48.9 0.1 1 1 1.4e-16 1.3e-12 48.1 0.1 1 122 9 125 9 143 0.83 Actin like proteins N terminal domain FtsA PF14450.6 103 pNZ_AAFJ01000010_00034 - 305 0.00018 21.9 0.2 1 2 0.00094 8.4 6.9 0.0 1 17 8 24 8 37 0.87 Cell division protein FtsA FtsA PF14450.6 103 pNZ_AAFJ01000010_00034 - 305 0.00018 21.9 0.2 2 2 1.1e-05 0.099 13.1 0.0 1 43 157 201 157 285 0.80 Cell division protein FtsA DUF4879 PF16219.5 124 pNZ_AAFJ01000010_00035 - 90 0.0012 19.0 0.2 1 1 7.4e-08 0.0013 18.9 0.2 54 105 22 73 4 83 0.87 Domain of unknown function (DUF4879) YopX PF09643.10 131 pNZ_AAFJ01000010_00036 - 148 3e-12 46.7 2.7 1 2 0.0081 1.5e+02 2.5 0.0 2 15 8 21 7 29 0.87 YopX protein YopX PF09643.10 131 pNZ_AAFJ01000010_00036 - 148 3e-12 46.7 2.7 2 2 1.3e-15 2.3e-11 43.9 1.0 44 131 32 127 20 127 0.72 YopX protein DUF4600 PF15372.6 128 pNZ_AAFJ01000010_00037 - 82 0.0093 16.4 0.2 1 1 1.2e-06 0.011 16.2 0.2 37 96 7 67 2 81 0.80 Domain of unknown function (DUF4600) TMF_TATA_bd PF12325.8 115 pNZ_AAFJ01000010_00037 - 82 0.023 14.9 0.1 1 1 3.9e-06 0.035 14.3 0.1 27 59 22 54 14 78 0.86 TATA element modulatory factor 1 TATA binding YopX PF09643.10 131 pNZ_AAFJ01000010_00038 - 120 2.8e-08 33.9 0.6 1 1 2.2e-12 4e-08 33.4 0.6 49 131 42 119 4 119 0.75 YopX protein HTH_17 PF12728.7 51 pNZ_AAFJ01000010_00041 - 169 2.5e-07 30.7 0.0 1 2 0.00089 1.2 9.3 0.0 2 27 29 55 28 65 0.77 Helix-turn-helix domain HTH_17 PF12728.7 51 pNZ_AAFJ01000010_00041 - 169 2.5e-07 30.7 0.0 2 2 8.2e-07 0.0011 19.1 0.0 5 27 99 121 90 127 0.92 Helix-turn-helix domain HTH_3 PF01381.22 55 pNZ_AAFJ01000010_00041 - 169 1.6e-05 24.8 0.0 1 2 4.9e-05 0.067 13.3 0.0 2 29 21 48 20 59 0.89 Helix-turn-helix HTH_3 PF01381.22 55 pNZ_AAFJ01000010_00041 - 169 1.6e-05 24.8 0.0 2 2 0.0012 1.7 8.8 0.0 6 29 92 115 89 125 0.90 Helix-turn-helix HTH_19 PF12844.7 65 pNZ_AAFJ01000010_00041 - 169 6.8e-05 22.8 0.5 1 2 2.3e-06 0.0032 17.4 0.2 8 64 24 106 17 107 0.88 Helix-turn-helix domain HTH_19 PF12844.7 65 pNZ_AAFJ01000010_00041 - 169 6.8e-05 22.8 0.5 2 2 0.0017 2.4 8.2 0.0 10 32 93 115 88 144 0.84 Helix-turn-helix domain MerR PF00376.23 38 pNZ_AAFJ01000010_00041 - 169 0.00015 21.4 0.0 1 2 0.0015 2 8.3 0.0 1 19 30 48 30 56 0.94 MerR family regulatory protein MerR PF00376.23 38 pNZ_AAFJ01000010_00041 - 169 0.00015 21.4 0.0 2 2 0.0002 0.27 11.0 0.0 4 21 100 117 99 125 0.88 MerR family regulatory protein HTH_26 PF13443.6 63 pNZ_AAFJ01000010_00041 - 169 0.0011 19.4 0.1 1 2 0.023 31 5.1 0.0 5 31 23 49 12 59 0.85 Cro/C1-type HTH DNA-binding domain HTH_26 PF13443.6 63 pNZ_AAFJ01000010_00041 - 169 0.0011 19.4 0.1 2 2 0.00019 0.26 11.8 0.1 4 42 89 125 88 129 0.88 Cro/C1-type HTH DNA-binding domain Phage_CI_repr PF07022.13 65 pNZ_AAFJ01000010_00041 - 169 0.0014 18.7 0.0 1 2 0.97 1.3e+03 -0.5 0.0 16 26 32 42 24 65 0.80 Bacteriophage CI repressor helix-turn-helix domain Phage_CI_repr PF07022.13 65 pNZ_AAFJ01000010_00041 - 169 0.0014 18.7 0.0 2 2 5.3e-06 0.0073 16.4 0.0 5 46 89 129 86 136 0.83 Bacteriophage CI repressor helix-turn-helix domain Terminase_5 PF06056.12 58 pNZ_AAFJ01000010_00041 - 169 0.0024 17.7 0.2 1 3 0.65 9e+02 -0.1 0.0 21 34 36 49 30 53 0.83 Putative ATPase subunit of terminase (gpP-like) Terminase_5 PF06056.12 58 pNZ_AAFJ01000010_00041 - 169 0.0024 17.7 0.2 2 3 0.77 1.1e+03 -0.4 0.1 29 49 58 78 41 83 0.73 Putative ATPase subunit of terminase (gpP-like) Terminase_5 PF06056.12 58 pNZ_AAFJ01000010_00041 - 169 0.0024 17.7 0.2 3 3 2.7e-05 0.037 13.9 0.0 17 37 99 119 97 128 0.86 Putative ATPase subunit of terminase (gpP-like) HTH_Crp_2 PF13545.6 68 pNZ_AAFJ01000010_00041 - 169 0.0028 17.6 0.0 1 3 0.29 4e+02 1.1 0.0 17 38 24 45 9 48 0.77 Crp-like helix-turn-helix domain HTH_Crp_2 PF13545.6 68 pNZ_AAFJ01000010_00041 - 169 0.0028 17.6 0.0 2 3 3.8e-05 0.053 13.5 0.0 17 38 91 112 67 114 0.79 Crp-like helix-turn-helix domain HTH_Crp_2 PF13545.6 68 pNZ_AAFJ01000010_00041 - 169 0.0028 17.6 0.0 3 3 2.9 3.9e+03 -2.1 0.0 4 13 139 148 129 169 0.50 Crp-like helix-turn-helix domain HTH_23 PF13384.6 50 pNZ_AAFJ01000010_00041 - 169 0.0046 16.7 0.0 1 3 0.013 17 5.3 0.0 17 37 28 48 22 52 0.82 Homeodomain-like domain HTH_23 PF13384.6 50 pNZ_AAFJ01000010_00041 - 169 0.0046 16.7 0.0 2 3 2.8 3.9e+03 -2.2 0.1 34 42 59 67 59 73 0.72 Homeodomain-like domain HTH_23 PF13384.6 50 pNZ_AAFJ01000010_00041 - 169 0.0046 16.7 0.0 3 3 0.0016 2.2 8.2 0.0 21 37 99 115 89 120 0.91 Homeodomain-like domain MerR_1 PF13411.6 69 pNZ_AAFJ01000010_00041 - 169 0.0086 16.2 0.0 1 2 0.034 47 4.2 0.0 2 24 30 52 29 67 0.84 MerR HTH family regulatory protein MerR_1 PF13411.6 69 pNZ_AAFJ01000010_00041 - 169 0.0086 16.2 0.0 2 2 0.00081 1.1 9.4 0.0 5 24 100 119 98 128 0.85 MerR HTH family regulatory protein SL4P PF17618.2 88 pNZ_AAFJ01000010_00041 - 169 0.026 14.6 1.6 1 2 0.0034 4.7 7.3 0.3 30 45 17 32 9 36 0.87 Uncharacterized Strongylid L4 protein SL4P PF17618.2 88 pNZ_AAFJ01000010_00041 - 169 0.026 14.6 1.6 2 2 0.01 14 5.8 0.0 40 79 105 143 97 148 0.83 Uncharacterized Strongylid L4 protein Vps4_C PF09336.10 61 pNZ_AAFJ01000010_00041 - 169 0.036 14.1 0.0 1 2 9e-05 0.12 12.3 0.0 8 42 9 42 4 51 0.83 Vps4 C terminal oligomerisation domain Vps4_C PF09336.10 61 pNZ_AAFJ01000010_00041 - 169 0.036 14.1 0.0 2 2 3.2 4.5e+03 -2.3 0.0 21 45 135 159 125 163 0.73 Vps4 C terminal oligomerisation domain Phage_terminase PF10668.9 60 pNZ_AAFJ01000010_00041 - 169 0.054 13.5 0.1 1 2 0.016 23 5.1 0.0 22 44 28 50 8 53 0.84 Phage terminase small subunit Phage_terminase PF10668.9 60 pNZ_AAFJ01000010_00041 - 169 0.054 13.5 0.1 2 2 0.008 11 6.1 0.0 22 42 95 115 76 121 0.84 Phage terminase small subunit SNase PF00565.17 108 pNZ_AAFJ01000010_00042 - 197 5.7e-24 84.7 0.4 1 1 1e-27 9.2e-24 84.0 0.4 1 108 90 183 90 183 0.93 Staphylococcal nuclease homologue O-antigen_lig PF13425.6 468 pNZ_AAFJ01000010_00042 - 197 0.022 13.6 4.2 1 1 3e-06 0.027 13.3 4.2 230 377 6 166 3 180 0.73 O-antigen ligase like membrane protein DUF4065 PF13274.6 114 pNZ_AAFJ01000010_00043 - 56 0.001 19.9 0.8 1 2 0.64 1.1e+04 -2.8 0.0 64 66 14 16 3 27 0.48 Protein of unknown function (DUF4065) DUF4065 PF13274.6 114 pNZ_AAFJ01000010_00043 - 56 0.001 19.9 0.8 2 2 7.4e-08 0.0013 19.6 0.5 1 27 30 56 30 56 0.95 Protein of unknown function (DUF4065) N6_N4_Mtase PF01555.18 231 pNZ_AAFJ01000010_00044 - 788 3.2e-15 56.5 7.5 1 3 3.3e-08 0.00012 21.9 0.0 171 223 20 71 8 76 0.90 DNA methylase N6_N4_Mtase PF01555.18 231 pNZ_AAFJ01000010_00044 - 788 3.2e-15 56.5 7.5 2 3 0.15 5.3e+02 0.1 0.6 95 116 87 128 81 241 0.62 DNA methylase N6_N4_Mtase PF01555.18 231 pNZ_AAFJ01000010_00044 - 788 3.2e-15 56.5 7.5 3 3 4.3e-12 1.5e-08 34.6 1.9 1 92 336 449 336 506 0.80 DNA methylase UPF0020 PF01170.18 197 pNZ_AAFJ01000010_00044 - 788 4.1e-06 26.6 0.0 1 2 0.00011 0.39 10.4 0.0 28 55 39 66 35 154 0.74 Putative RNA methylase family UPF0020 UPF0020 PF01170.18 197 pNZ_AAFJ01000010_00044 - 788 4.1e-06 26.6 0.0 2 2 1.4e-05 0.051 13.3 0.0 75 132 287 346 254 351 0.80 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 182 pNZ_AAFJ01000010_00044 - 788 0.0038 16.9 0.0 1 2 0.00014 0.5 10.0 0.0 34 79 28 76 10 145 0.80 Conserved hypothetical protein 95 Cons_hypoth95 PF03602.15 182 pNZ_AAFJ01000010_00044 - 788 0.0038 16.9 0.0 2 2 0.011 38 3.9 0.0 104 124 326 346 288 356 0.71 Conserved hypothetical protein 95 AviRa PF11599.8 234 pNZ_AAFJ01000010_00044 - 788 0.021 14.3 0.6 1 3 2.7 9.8e+03 -4.3 0.0 57 65 43 51 37 55 0.82 RRNA methyltransferase AviRa AviRa PF11599.8 234 pNZ_AAFJ01000010_00044 - 788 0.021 14.3 0.6 2 3 3.4e-05 0.12 11.8 0.0 111 182 284 351 265 355 0.77 RRNA methyltransferase AviRa AviRa PF11599.8 234 pNZ_AAFJ01000010_00044 - 788 0.021 14.3 0.6 3 3 0.19 6.9e+02 -0.5 0.0 192 218 395 420 385 433 0.71 RRNA methyltransferase AviRa Stork_head PF10264.9 79 pNZ_AAFJ01000010_00044 - 788 0.049 13.8 0.0 1 1 3.8e-05 0.13 12.4 0.0 9 62 563 616 559 627 0.91 Winged helix Storkhead-box1 domain N6_N4_Mtase PF01555.18 231 pNZ_AAFJ01000010_00045 - 277 9.5e-26 90.9 0.2 1 2 1.4e-17 2e-14 53.9 0.0 134 230 10 100 1 101 0.82 DNA methylase N6_N4_Mtase PF01555.18 231 pNZ_AAFJ01000010_00045 - 277 9.5e-26 90.9 0.2 2 2 5.4e-12 8.1e-09 35.5 0.2 1 73 132 238 132 277 0.80 DNA methylase Methyltransf_25 PF13649.6 97 pNZ_AAFJ01000010_00045 - 277 2.4e-08 34.6 0.0 1 2 1.2e-10 1.7e-07 31.8 0.0 1 77 65 145 65 157 0.84 Methyltransferase domain Methyltransf_25 PF13649.6 97 pNZ_AAFJ01000010_00045 - 277 2.4e-08 34.6 0.0 2 2 0.86 1.3e+03 0.2 0.0 81 95 191 205 163 206 0.79 Methyltransferase domain Methyltransf_11 PF08241.12 96 pNZ_AAFJ01000010_00045 - 277 3.1e-08 34.2 0.0 1 2 1.9e-08 2.9e-05 24.6 0.0 1 68 66 138 66 154 0.90 Methyltransferase domain Methyltransf_11 PF08241.12 96 pNZ_AAFJ01000010_00045 - 277 3.1e-08 34.2 0.0 2 2 0.0036 5.4 7.7 0.0 48 94 162 209 141 211 0.76 Methyltransferase domain Methyltransf_31 PF13847.6 152 pNZ_AAFJ01000010_00045 - 277 6.3e-08 32.5 0.1 1 1 7.7e-11 1.2e-07 31.7 0.1 2 106 60 208 59 258 0.71 Methyltransferase domain MTS PF05175.14 169 pNZ_AAFJ01000010_00045 - 277 2.1e-06 27.4 0.0 1 1 2.2e-09 3.2e-06 26.8 0.0 23 165 54 208 44 212 0.74 Methyltransferase small domain UPF0020 PF01170.18 197 pNZ_AAFJ01000010_00045 - 277 4.7e-05 23.2 0.1 1 1 1.1e-06 0.0016 18.1 0.1 32 139 65 149 56 156 0.79 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 165 pNZ_AAFJ01000010_00045 - 277 0.0002 21.0 0.1 1 2 5.9e-07 0.00089 18.9 0.0 3 81 64 141 62 146 0.90 RNA cap guanine-N2 methyltransferase Methyltransf_15 PF09445.10 165 pNZ_AAFJ01000010_00045 - 277 0.0002 21.0 0.1 2 2 0.75 1.1e+03 -1.0 0.0 40 69 180 210 172 239 0.75 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 182 pNZ_AAFJ01000010_00045 - 277 0.0027 17.4 0.0 1 1 3.2e-06 0.0048 16.6 0.0 42 126 62 144 52 159 0.80 Conserved hypothetical protein 95 N6_Mtase PF02384.16 312 pNZ_AAFJ01000010_00045 - 277 0.0058 15.9 0.0 1 1 6.4e-06 0.0096 15.2 0.0 36 136 53 142 45 169 0.78 N-6 DNA Methylase Methyltransf_12 PF08242.12 99 pNZ_AAFJ01000010_00045 - 277 0.024 15.4 0.0 1 2 4.5e-05 0.068 13.9 0.0 1 86 66 152 66 157 0.84 Methyltransferase domain Methyltransf_12 PF08242.12 99 pNZ_AAFJ01000010_00045 - 277 0.024 15.4 0.0 2 2 3.8 5.7e+03 -1.9 0.0 77 94 187 204 149 206 0.66 Methyltransferase domain Methyltransf_23 PF13489.6 165 pNZ_AAFJ01000010_00045 - 277 0.027 14.3 0.0 1 1 4.5e-05 0.068 13.0 0.0 12 62 50 120 39 243 0.75 Methyltransferase domain PrmA PF06325.13 296 pNZ_AAFJ01000010_00045 - 277 0.15 11.4 0.0 1 1 0.00015 0.22 10.9 0.0 158 232 58 137 48 153 0.73 Ribosomal protein L11 methyltransferase (PrmA) DUF1883 PF08980.10 89 pNZ_AAFJ01000010_00046 - 99 0.15 12.0 0.3 1 2 0.08 1.4e+03 -0.8 0.0 14 33 8 27 2 37 0.67 Domain of unknown function (DUF1883) DUF1883 PF08980.10 89 pNZ_AAFJ01000010_00046 - 99 0.15 12.0 0.3 2 2 2.3e-05 0.41 10.6 0.1 3 39 41 78 39 90 0.77 Domain of unknown function (DUF1883) ParE_toxin PF05016.15 90 pNZ_AAFJ01000010_00047 - 95 3.8e-09 37.0 0.2 1 1 7.8e-13 4.7e-09 36.8 0.2 2 90 6 94 5 94 0.80 ParE toxin of type II toxin-antitoxin system, parDE YafQ_toxin PF15738.5 88 pNZ_AAFJ01000010_00047 - 95 0.0008 19.7 0.2 1 1 1.7e-07 0.00099 19.4 0.2 1 86 3 93 3 95 0.78 Bacterial toxin of type II toxin-antitoxin system, YafQ IKKbetaNEMObind PF12179.8 37 pNZ_AAFJ01000010_00047 - 95 0.09 12.8 0.2 1 1 2.7e-05 0.16 12.0 0.2 6 27 22 43 21 46 0.92 I-kappa-kinase-beta NEMO binding domain RHH_5 PF07878.11 43 pNZ_AAFJ01000010_00048 - 76 0.00016 21.5 0.0 1 1 6.6e-08 0.00024 20.9 0.0 3 35 9 41 7 46 0.93 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 RHH_3 PF12651.7 44 pNZ_AAFJ01000010_00048 - 76 0.00048 20.0 0.0 1 1 2.5e-07 0.00088 19.2 0.0 5 39 10 44 8 46 0.92 Ribbon-helix-helix domain HicB_lk_antitox PF15919.5 123 pNZ_AAFJ01000010_00048 - 76 0.012 15.7 0.0 1 1 5.3e-06 0.019 15.1 0.0 88 122 6 40 2 41 0.94 HicB_like antitoxin of bacterial toxin-antitoxin system CcdA PF07362.12 71 pNZ_AAFJ01000010_00048 - 76 0.025 15.0 0.1 1 1 9.6e-06 0.034 14.6 0.1 7 60 17 75 12 76 0.81 Post-segregation antitoxin CcdA PuR_N PF09182.10 70 pNZ_AAFJ01000010_00048 - 76 0.16 11.9 0.1 1 1 5.7e-05 0.2 11.6 0.1 11 43 9 43 5 60 0.79 Bacterial purine repressor, N-terminal Bro-N PF02498.17 95 pNZ_AAFJ01000010_00049 - 281 1.6e-22 80.0 2.7 1 2 5.2e-26 1.9e-22 79.8 0.0 1 95 26 116 26 116 0.85 BRO family, N-terminal domain Bro-N PF02498.17 95 pNZ_AAFJ01000010_00049 - 281 1.6e-22 80.0 2.7 2 2 0.89 3.2e+03 -1.1 1.4 37 44 179 186 145 237 0.58 BRO family, N-terminal domain HTH_3 PF01381.22 55 pNZ_AAFJ01000010_00049 - 281 2e-07 31.0 0.1 1 1 1.9e-10 6.7e-07 29.3 0.1 2 55 206 260 205 260 0.97 Helix-turn-helix HTH_19 PF12844.7 65 pNZ_AAFJ01000010_00049 - 281 4.5e-07 29.8 0.1 1 4 2 7.1e+03 -2.9 0.0 17 33 49 65 42 68 0.69 Helix-turn-helix domain HTH_19 PF12844.7 65 pNZ_AAFJ01000010_00049 - 281 4.5e-07 29.8 0.1 2 4 0.39 1.4e+03 -0.6 0.0 36 48 97 109 76 131 0.67 Helix-turn-helix domain HTH_19 PF12844.7 65 pNZ_AAFJ01000010_00049 - 281 4.5e-07 29.8 0.1 3 4 1 3.7e+03 -2.0 0.2 15 27 165 180 154 184 0.55 Helix-turn-helix domain HTH_19 PF12844.7 65 pNZ_AAFJ01000010_00049 - 281 4.5e-07 29.8 0.1 4 4 1.2e-10 4.5e-07 29.8 0.1 1 64 202 265 202 266 0.94 Helix-turn-helix domain ZapD PF07072.11 210 pNZ_AAFJ01000010_00049 - 281 0.00027 20.7 3.0 1 2 3.8e-06 0.014 15.2 0.1 17 67 32 82 18 123 0.87 Cell division protein ZapD PF07072.11 210 pNZ_AAFJ01000010_00049 - 281 0.00027 20.7 3.0 2 2 0.0047 17 5.1 0.6 67 102 144 179 131 184 0.87 Cell division protein HTH_31 PF13560.6 64 pNZ_AAFJ01000010_00049 - 281 0.0048 17.2 0.0 1 1 2.6e-06 0.0092 16.3 0.0 2 46 201 245 200 260 0.85 Helix-turn-helix domain SLT PF01464.20 117 pNZ_AAFJ01000010_00050 - 143 3.1e-22 78.4 0.0 1 1 8.1e-26 3.6e-22 78.2 0.0 2 96 18 116 17 134 0.92 Transglycosylase SLT domain Glucosaminidase PF01832.20 87 pNZ_AAFJ01000010_00050 - 143 0.017 15.6 0.2 1 1 7.8e-06 0.035 14.6 0.2 2 43 17 61 16 136 0.55 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Lys PF00062.20 124 pNZ_AAFJ01000010_00050 - 143 0.07 13.4 0.1 1 1 3.6e-05 0.16 12.2 0.0 31 62 36 68 27 89 0.82 C-type lysozyme/alpha-lactalbumin family UPF0146 PF03686.13 129 pNZ_AAFJ01000010_00050 - 143 0.084 12.7 0.0 1 1 2.9e-05 0.13 12.1 0.0 37 73 57 96 45 99 0.79 Uncharacterised protein family (UPF0146) YafQ_toxin PF15738.5 88 pNZ_AAFJ01000010_00052 - 101 9.3e-26 90.0 0.7 1 1 1.2e-29 1.1e-25 89.8 0.7 4 88 15 99 12 99 0.97 Bacterial toxin of type II toxin-antitoxin system, YafQ ASL_C PF08328.11 115 pNZ_AAFJ01000010_00052 - 101 0.12 12.5 0.1 1 1 2.1e-05 0.19 11.8 0.1 59 99 7 47 2 57 0.89 Adenylosuccinate lyase C-terminal DDE_Tnp_1_7 PF13843.6 350 pNZ_AAFJ01000010_00053 - 103 0.0083 15.5 1.0 1 1 2.5e-06 0.009 15.3 1.0 84 128 14 57 12 88 0.89 Transposase IS4 LETM1 PF07766.13 268 pNZ_AAFJ01000010_00053 - 103 0.009 15.4 4.8 1 1 2.9e-06 0.01 15.2 4.8 91 135 22 73 13 96 0.67 LETM1-like protein Baculo_p24 PF05073.12 182 pNZ_AAFJ01000010_00053 - 103 0.035 13.9 2.5 1 1 1.1e-05 0.038 13.8 2.5 92 174 13 101 2 103 0.74 Baculovirus P24 capsid protein PIEZO PF15917.5 228 pNZ_AAFJ01000010_00053 - 103 0.073 12.5 5.7 1 1 2.3e-05 0.084 12.3 5.7 94 151 12 70 8 93 0.70 Piezo DUF4446 PF14584.6 150 pNZ_AAFJ01000010_00053 - 103 1.3 9.0 6.0 1 1 0.00046 1.6 8.7 5.6 24 93 19 90 14 94 0.83 Protein of unknown function (DUF4446) Oxidored_q3 PF00499.20 144 pNZ_AAFJ01000010_00054 - 210 0.0036 17.0 0.2 1 1 2e-06 0.0052 16.5 0.2 8 61 132 196 127 210 0.81 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TctA PF01970.16 409 pNZ_AAFJ01000010_00054 - 210 0.016 14.0 0.6 1 1 8.4e-06 0.022 13.5 0.6 258 376 64 183 42 186 0.73 Tripartite tricarboxylate transporter TctA family Carbpep_Y_N PF05388.11 125 pNZ_AAFJ01000010_00054 - 210 0.027 15.0 2.7 1 2 1.1e-05 0.027 15.0 0.8 24 106 3 87 1 98 0.76 Carboxypeptidase Y pro-peptide Carbpep_Y_N PF05388.11 125 pNZ_AAFJ01000010_00054 - 210 0.027 15.0 2.7 2 2 0.61 1.6e+03 -0.4 0.1 43 65 102 124 86 140 0.58 Carboxypeptidase Y pro-peptide Phage_holin_3_6 PF07332.11 113 pNZ_AAFJ01000010_00054 - 210 0.11 12.6 0.3 1 1 6.9e-05 0.18 11.9 0.3 45 103 135 198 131 205 0.55 Putative Actinobacterial Holin-X, holin superfamily III RseC_MucC PF04246.12 130 pNZ_AAFJ01000010_00054 - 210 0.13 12.2 1.3 1 1 8.1e-05 0.21 11.6 1.3 67 120 137 191 132 198 0.75 Positive regulator of sigma(E), RseC/MucC DUF2207 PF09972.9 492 pNZ_AAFJ01000010_00054 - 210 0.27 10.0 7.3 1 1 0.00014 0.35 9.6 7.3 273 446 23 198 12 203 0.51 Predicted membrane protein (DUF2207) Spore_YhaL PF14147.6 52 pNZ_AAFJ01000010_00054 - 210 4 7.2 5.2 1 2 0.00068 1.7 8.4 0.6 6 24 141 159 138 165 0.90 Sporulation protein YhaL Spore_YhaL PF14147.6 52 pNZ_AAFJ01000010_00054 - 210 4 7.2 5.2 2 2 0.28 7.1e+02 -0.0 0.4 20 32 182 192 166 207 0.48 Sporulation protein YhaL Bacillus_PapR PF05968.11 45 pNZ_AAFJ01000010_00055 - 93 0.022 14.6 0.1 1 1 5.4e-06 0.048 13.5 0.1 1 30 1 34 1 37 0.85 Bacillus PapR protein YtpI PF14007.6 87 pNZ_AAFJ01000010_00055 - 93 0.024 14.8 9.1 1 3 0.0029 26 5.1 0.3 36 58 5 27 2 28 0.88 YtpI-like protein YtpI PF14007.6 87 pNZ_AAFJ01000010_00055 - 93 0.024 14.8 9.1 2 3 4.3e-06 0.038 14.1 0.1 49 76 36 63 33 67 0.90 YtpI-like protein YtpI PF14007.6 87 pNZ_AAFJ01000010_00055 - 93 0.024 14.8 9.1 3 3 0.059 5.3e+02 0.8 0.7 42 52 65 75 61 90 0.52 YtpI-like protein TraL PF07178.11 90 pNZ_AAFJ01000010_00056 - 101 3.1e-13 50.0 0.5 1 1 2e-17 3.6e-13 49.8 0.5 2 89 10 98 9 99 0.87 TraL protein TraE PF05309.11 182 pNZ_AAFJ01000010_00057 - 197 1e-32 113.0 0.8 1 1 7.1e-37 1.3e-32 112.7 0.8 1 180 1 180 1 181 0.97 TraE protein TraK PF06586.11 231 pNZ_AAFJ01000010_00058 - 260 8.9e-23 81.2 0.2 1 1 1.4e-26 2.6e-22 79.7 0.2 5 215 6 230 3 236 0.88 TraK protein TrbI PF03743.14 187 pNZ_AAFJ01000010_00059 - 436 4.8e-35 121.1 1.5 1 1 2.7e-38 8e-35 120.4 1.5 2 186 213 415 212 416 0.93 Bacterial conjugation TrbI-like protein Cep57_CLD PF14073.6 178 pNZ_AAFJ01000010_00059 - 436 0.0019 18.2 4.7 1 2 6.4e-07 0.0019 18.2 4.7 40 138 58 157 43 173 0.76 Centrosome localisation domain of Cep57 Cep57_CLD PF14073.6 178 pNZ_AAFJ01000010_00059 - 436 0.0019 18.2 4.7 2 2 1.4 4.3e+03 -2.4 0.4 39 48 418 427 401 435 0.38 Centrosome localisation domain of Cep57 O-antigen_lig PF13425.6 468 pNZ_AAFJ01000010_00059 - 436 0.08 11.7 8.5 1 1 4.4e-05 0.13 11.0 8.5 234 351 14 147 6 153 0.71 O-antigen ligase like membrane protein YrzK PF17449.2 54 pNZ_AAFJ01000010_00059 - 436 0.35 11.2 0.0 1 2 0.00012 0.35 11.2 0.0 14 53 52 93 47 94 0.83 Uncharacterized YrzK-like YrzK PF17449.2 54 pNZ_AAFJ01000010_00059 - 436 0.35 11.2 0.0 2 2 6 1.8e+04 -5.1 2.4 44 53 201 210 200 211 0.83 Uncharacterized YrzK-like YabA PF06156.13 102 pNZ_AAFJ01000010_00059 - 436 0.61 10.8 11.7 1 3 2.1e-05 0.061 14.0 5.6 17 79 70 147 61 150 0.78 Initiation control protein YabA YabA PF06156.13 102 pNZ_AAFJ01000010_00059 - 436 0.61 10.8 11.7 2 3 0.62 1.9e+03 -0.4 0.3 22 31 139 148 131 211 0.57 Initiation control protein YabA YabA PF06156.13 102 pNZ_AAFJ01000010_00059 - 436 0.61 10.8 11.7 3 3 2.1 6.2e+03 -2.1 0.1 50 57 418 424 373 435 0.54 Initiation control protein YabA DUF4481 PF14800.6 293 pNZ_AAFJ01000010_00059 - 436 9 5.7 6.3 1 2 1.1 3.2e+03 -2.7 0.1 98 132 25 60 20 65 0.69 Domain of unknown function (DUF4481) DUF4481 PF14800.6 293 pNZ_AAFJ01000010_00059 - 436 9 5.7 6.3 2 2 0.00051 1.5 8.2 2.3 177 249 84 155 77 165 0.86 Domain of unknown function (DUF4481) Thioredoxin_2 PF13098.6 109 pNZ_AAFJ01000010_00060 - 248 1.4e-15 57.6 0.2 1 2 2.5 6.5e+03 -2.4 0.0 92 107 28 43 22 44 0.75 Thioredoxin-like domain Thioredoxin_2 PF13098.6 109 pNZ_AAFJ01000010_00060 - 248 1.4e-15 57.6 0.2 2 2 1.4e-18 3.5e-15 56.4 0.1 2 99 121 240 120 247 0.95 Thioredoxin-like domain DsbC_N PF10411.9 54 pNZ_AAFJ01000010_00060 - 248 8.2e-10 38.0 0.1 1 1 5.8e-13 1.5e-09 37.2 0.1 2 50 30 79 29 82 0.94 Disulfide bond isomerase protein N-terminus Thioredoxin_4 PF13462.6 166 pNZ_AAFJ01000010_00060 - 248 0.0014 18.8 4.8 1 2 0.00015 0.39 10.9 0.3 17 35 128 146 120 157 0.83 Thioredoxin Thioredoxin_4 PF13462.6 166 pNZ_AAFJ01000010_00060 - 248 0.0014 18.8 4.8 2 2 0.00031 0.8 9.8 0.5 88 164 162 246 148 247 0.60 Thioredoxin Glutaredoxin PF00462.24 60 pNZ_AAFJ01000010_00060 - 248 0.0033 17.6 0.1 1 2 3.9e-06 0.01 16.1 0.0 2 44 129 173 128 186 0.81 Glutaredoxin Glutaredoxin PF00462.24 60 pNZ_AAFJ01000010_00060 - 248 0.0033 17.6 0.1 2 2 1.7 4.3e+03 -2.0 0.0 39 55 209 225 191 228 0.63 Glutaredoxin TraF PF13728.6 224 pNZ_AAFJ01000010_00060 - 248 0.086 12.7 0.1 1 2 0.014 37 4.0 0.0 126 147 121 142 100 148 0.87 F plasmid transfer operon protein TraF PF13728.6 224 pNZ_AAFJ01000010_00060 - 248 0.086 12.7 0.1 2 2 0.0023 6 6.6 0.0 181 212 208 239 184 247 0.76 F plasmid transfer operon protein Thioredoxin_8 PF13905.6 95 pNZ_AAFJ01000010_00060 - 248 0.1 12.9 1.3 1 2 0.86 2.2e+03 -1.0 0.0 23 42 49 66 43 108 0.78 Thioredoxin-like Thioredoxin_8 PF13905.6 95 pNZ_AAFJ01000010_00060 - 248 0.1 12.9 1.3 2 2 0.00015 0.39 11.1 0.7 2 93 125 230 124 232 0.63 Thioredoxin-like DUF393 PF04134.12 113 pNZ_AAFJ01000010_00060 - 248 0.14 13.5 0.0 1 2 6.3 1.6e+04 -2.8 0.0 26 54 83 111 71 120 0.63 Protein of unknown function, DUF393 DUF393 PF04134.12 113 pNZ_AAFJ01000010_00060 - 248 0.14 13.5 0.0 2 2 0.00013 0.33 12.3 0.0 4 35 133 164 129 217 0.74 Protein of unknown function, DUF393 SH3_3 PF08239.11 55 pNZ_AAFJ01000010_00061 - 303 6.2e-06 26.4 0.0 1 1 2.3e-09 1.4e-05 25.3 0.0 3 50 255 296 253 300 0.90 Bacterial SH3 domain TraV PF09676.10 132 pNZ_AAFJ01000010_00061 - 303 0.00078 20.4 1.2 1 2 1.3e-07 0.00078 20.4 1.2 1 61 27 86 27 107 0.68 Type IV conjugative transfer system lipoprotein (TraV) TraV PF09676.10 132 pNZ_AAFJ01000010_00061 - 303 0.00078 20.4 1.2 2 2 1.5 9.1e+03 -2.4 9.4 20 61 143 176 116 246 0.61 Type IV conjugative transfer system lipoprotein (TraV) DUF3410 PF11890.8 81 pNZ_AAFJ01000010_00061 - 303 0.083 12.7 0.0 1 1 3.6e-05 0.21 11.4 0.0 25 45 43 63 30 76 0.82 Domain of unknown function (DUF3410) SH3_3 PF08239.11 55 pNZ_AAFJ01000010_00062 - 160 0.00054 20.2 0.1 1 1 1.6e-07 0.00093 19.4 0.1 4 39 106 143 103 152 0.84 Bacterial SH3 domain PBP_dimer PF03717.15 180 pNZ_AAFJ01000010_00062 - 160 0.027 14.8 0.7 1 1 5.9e-06 0.035 14.4 0.7 42 126 34 124 13 143 0.80 Penicillin-binding Protein dimerisation domain Closter_coat PF01785.17 189 pNZ_AAFJ01000010_00062 - 160 0.064 12.5 0.2 1 1 1.5e-05 0.088 12.1 0.2 12 99 22 113 18 115 0.84 Closterovirus coat protein TraC_F_IV PF11130.8 238 pNZ_AAFJ01000010_00064 - 837 5.7e-32 111.2 0.0 1 2 1.2e-34 2.1e-31 109.4 0.0 2 223 37 246 36 258 0.94 F pilus assembly Type-IV secretion system for plasmid transfer TraC_F_IV PF11130.8 238 pNZ_AAFJ01000010_00064 - 837 5.7e-32 111.2 0.0 2 2 1.2 2.2e+03 -2.0 0.0 66 136 744 811 738 832 0.64 F pilus assembly Type-IV secretion system for plasmid transfer AAA_10 PF12846.7 362 pNZ_AAFJ01000010_00064 - 837 1.6e-10 40.5 0.2 1 1 5.2e-13 9.3e-10 38.0 0.2 19 292 457 722 446 772 0.73 AAA-like domain TrwB_AAD_bind PF10412.9 386 pNZ_AAFJ01000010_00064 - 837 5.1e-08 32.2 0.0 1 2 2.5e-06 0.0045 15.9 0.0 2 127 446 573 445 605 0.75 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pNZ_AAFJ01000010_00064 - 837 5.1e-08 32.2 0.0 2 2 9.7e-06 0.017 14.0 0.0 226 288 652 719 640 796 0.68 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 137 pNZ_AAFJ01000010_00064 - 837 0.0013 19.1 0.4 1 3 5.9 1.1e+04 -3.4 0.0 110 136 83 107 78 108 0.77 AAA domain AAA_22 PF13401.6 137 pNZ_AAFJ01000010_00064 - 837 0.0013 19.1 0.4 2 3 0.0032 5.8 7.2 0.0 6 26 460 480 456 586 0.84 AAA domain AAA_22 PF13401.6 137 pNZ_AAFJ01000010_00064 - 837 0.0013 19.1 0.4 3 3 0.0013 2.3 8.5 0.0 86 128 661 709 593 715 0.80 AAA domain ResIII PF04851.15 171 pNZ_AAFJ01000010_00064 - 837 0.0024 17.9 2.1 1 2 1.4 2.6e+03 -1.7 0.1 63 85 123 149 121 190 0.62 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pNZ_AAFJ01000010_00064 - 837 0.0024 17.9 2.1 2 2 3.2e-05 0.057 13.4 0.2 20 151 455 689 442 706 0.57 Type III restriction enzyme, res subunit CbiA PF01656.23 128 pNZ_AAFJ01000010_00064 - 837 0.0056 16.7 0.0 1 1 8.4e-06 0.015 15.3 0.0 7 104 467 574 464 597 0.77 CobQ/CobB/MinD/ParA nucleotide binding domain Zot PF05707.12 194 pNZ_AAFJ01000010_00064 - 837 0.014 15.1 0.0 1 2 3.5 6.3e+03 -3.4 0.0 65 99 107 144 78 155 0.65 Zonular occludens toxin (Zot) Zot PF05707.12 194 pNZ_AAFJ01000010_00064 - 837 0.014 15.1 0.0 2 2 2.2e-05 0.039 13.6 0.0 84 131 673 717 657 745 0.87 Zonular occludens toxin (Zot) TraG-D_C PF12696.7 126 pNZ_AAFJ01000010_00064 - 837 0.017 15.1 0.0 1 1 2.9e-05 0.052 13.5 0.0 5 69 674 746 670 787 0.77 TraM recognition site of TraD and TraG RsgA_GTPase PF03193.16 167 pNZ_AAFJ01000010_00064 - 837 0.056 13.3 0.0 1 1 7.2e-05 0.13 12.2 0.0 67 122 427 482 410 491 0.84 RsgA GTPase DUF1639 PF07797.14 50 pNZ_AAFJ01000010_00064 - 837 0.073 13.1 0.1 1 2 0.0026 4.7 7.3 0.0 11 32 286 306 283 316 0.78 Protein of unknown function (DUF1639) DUF1639 PF07797.14 50 pNZ_AAFJ01000010_00064 - 837 0.073 13.1 0.1 2 2 0.065 1.2e+02 2.8 0.0 13 36 546 570 543 572 0.78 Protein of unknown function (DUF1639) TrbI_Ftype PF09677.10 106 pNZ_AAFJ01000010_00065 - 109 0.028 14.7 0.0 1 1 1.7e-06 0.031 14.6 0.0 13 99 15 104 4 109 0.77 Type-F conjugative transfer system protein (TrbI_Ftype) Peptidase_S26 PF10502.9 138 pNZ_AAFJ01000010_00066 - 168 1.6e-15 57.1 0.0 1 1 2.5e-19 2.2e-15 56.6 0.0 2 133 40 166 39 167 0.96 Signal peptidase, peptidase S26 PRA-CH PF01502.18 74 pNZ_AAFJ01000010_00066 - 168 0.14 12.0 0.0 1 1 3.5e-05 0.31 10.9 0.0 10 44 59 94 52 118 0.80 Phosphoribosyl-AMP cyclohydrolase TraH PF06122.11 361 pNZ_AAFJ01000010_00067 - 468 5.3e-64 216.8 0.3 1 2 5.9e-68 5.3e-64 216.8 0.3 2 360 22 384 21 385 0.86 Conjugative relaxosome accessory transposon protein TraH PF06122.11 361 pNZ_AAFJ01000010_00067 - 468 5.3e-64 216.8 0.3 2 2 0.16 1.4e+03 -1.8 0.4 156 206 391 448 388 460 0.49 Conjugative relaxosome accessory transposon protein ArfGap PF01412.18 117 pNZ_AAFJ01000010_00067 - 468 0.37 10.9 1.7 1 2 5.1e-05 0.46 10.6 0.1 24 71 107 164 103 197 0.75 Putative GTPase activating protein for Arf ArfGap PF01412.18 117 pNZ_AAFJ01000010_00067 - 468 0.37 10.9 1.7 2 2 0.39 3.5e+03 -1.9 0.3 44 75 416 448 398 456 0.72 Putative GTPase activating protein for Arf SAYSvFN PF10260.9 70 pNZ_AAFJ01000010_00068 - 394 0.046 13.6 0.2 1 1 1.3e-05 0.12 12.3 0.2 37 60 233 256 226 265 0.78 Uncharacterized conserved domain (SAYSvFN) Ribosomal_L6e PF01159.19 111 pNZ_AAFJ01000010_00068 - 394 0.84 10.2 6.1 1 1 0.00019 1.7 9.2 5.5 31 95 219 291 209 306 0.75 Ribosomal protein L6e TraN PF06986.11 240 pNZ_AAFJ01000010_00069 - 722 3.3e-26 92.5 26.5 1 2 0.25 1.5e+03 -1.3 0.3 64 127 243 310 219 332 0.55 Type-1V conjugative transfer system mating pair stabilisation TraN PF06986.11 240 pNZ_AAFJ01000010_00069 - 722 3.3e-26 92.5 26.5 2 2 1.5e-28 9.2e-25 87.7 20.4 56 239 498 669 476 670 0.70 Type-1V conjugative transfer system mating pair stabilisation Lectin_C PF00059.21 108 pNZ_AAFJ01000010_00069 - 722 1.8e-05 25.4 0.0 1 2 3.1e-09 1.8e-05 25.4 0.0 2 58 59 114 58 146 0.89 Lectin C-type domain Lectin_C PF00059.21 108 pNZ_AAFJ01000010_00069 - 722 1.8e-05 25.4 0.0 2 2 3 1.8e+04 -4.5 1.9 77 105 604 635 592 637 0.61 Lectin C-type domain Xol-1_GHMP-like PF09109.10 189 pNZ_AAFJ01000010_00069 - 722 0.035 14.0 0.0 1 1 1.2e-05 0.073 12.9 0.0 91 143 250 310 233 338 0.77 Switch protein XOL-1, GHMP-like TraF PF13728.6 224 pNZ_AAFJ01000010_00070 - 250 3.2e-18 66.4 7.8 1 1 7.8e-22 4.7e-18 65.8 7.8 1 171 26 193 26 237 0.84 F plasmid transfer operon protein PUA_2 PF14306.6 159 pNZ_AAFJ01000010_00070 - 250 0.015 15.0 0.3 1 1 4.7e-06 0.028 14.1 0.3 74 139 52 120 29 149 0.79 PUA-like domain DUF2369 PF10179.9 95 pNZ_AAFJ01000010_00070 - 250 0.18 12.2 2.7 1 2 0.048 2.9e+02 1.9 0.1 44 71 22 64 11 85 0.56 Uncharacterised conserved protein (DUF2369) DUF2369 PF10179.9 95 pNZ_AAFJ01000010_00070 - 250 0.18 12.2 2.7 2 2 0.00013 0.79 10.1 0.3 19 70 104 164 84 179 0.85 Uncharacterised conserved protein (DUF2369) TraG_N PF07916.11 467 pNZ_AAFJ01000010_00071 - 886 3.7e-55 187.6 16.8 1 2 2.1e-59 3.7e-55 187.6 16.8 1 466 24 476 24 477 0.90 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pNZ_AAFJ01000010_00071 - 886 3.7e-55 187.6 16.8 2 2 0.28 4.9e+03 -4.0 2.6 221 295 666 739 629 770 0.50 TraG-like protein, N-terminal region TIM21 PF08294.11 145 pNZ_AAFJ01000010_00072 - 203 2.7 7.9 3.9 1 3 0.0013 7.5 6.4 0.4 6 44 25 63 21 69 0.89 TIM21 TIM21 PF08294.11 145 pNZ_AAFJ01000010_00072 - 203 2.7 7.9 3.9 2 3 0.18 1.1e+03 -0.6 0.1 5 31 61 88 58 92 0.68 TIM21 TIM21 PF08294.11 145 pNZ_AAFJ01000010_00072 - 203 2.7 7.9 3.9 3 3 0.031 1.8e+02 1.9 0.0 17 42 148 173 134 186 0.77 TIM21 YwiC PF14256.6 126 pNZ_AAFJ01000010_00072 - 203 2.9 8.2 13.6 1 3 0.12 7.1e+02 0.5 4.2 33 81 8 56 2 71 0.60 YwiC-like protein YwiC PF14256.6 126 pNZ_AAFJ01000010_00072 - 203 2.9 8.2 13.6 2 3 2.4e-05 0.14 12.5 1.5 62 126 62 126 53 126 0.87 YwiC-like protein YwiC PF14256.6 126 pNZ_AAFJ01000010_00072 - 203 2.9 8.2 13.6 3 3 0.16 9.6e+02 0.1 0.0 33 58 149 176 128 184 0.65 YwiC-like protein T_cell_tran_alt PF15128.6 92 pNZ_AAFJ01000010_00072 - 203 3.6 7.4 10.0 1 3 0.3 1.8e+03 -1.2 0.1 23 45 24 48 15 54 0.66 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pNZ_AAFJ01000010_00072 - 203 3.6 7.4 10.0 2 3 0.00012 0.69 9.7 2.2 18 45 52 79 36 90 0.80 T-cell leukemia translocation-altered T_cell_tran_alt PF15128.6 92 pNZ_AAFJ01000010_00072 - 203 3.6 7.4 10.0 3 3 0.03 1.8e+02 2.0 0.5 29 49 112 132 85 143 0.77 T-cell leukemia translocation-altered Wzy_C PF04932.15 155 pNZ_AAFJ01000010_00073 - 101 0.086 12.5 0.1 1 1 1.1e-05 0.096 12.3 0.1 41 80 9 82 3 100 0.77 O-Antigen ligase DUF4713 PF15831.5 56 pNZ_AAFJ01000010_00073 - 101 0.17 12.3 3.6 1 2 2.1e-05 0.18 12.2 2.2 25 49 2 26 1 36 0.84 Domain of unknown function (DUF4713) DUF4713 PF15831.5 56 pNZ_AAFJ01000010_00073 - 101 0.17 12.3 3.6 2 2 0.4 3.6e+03 -1.5 0.0 14 27 67 80 62 92 0.75 Domain of unknown function (DUF4713) PFO_beta_C PF12367.8 66 pNZ_AAFJ01000010_00075 - 285 0.064 13.4 1.6 1 2 1e-05 0.093 12.9 0.2 9 62 126 184 123 188 0.82 Pyruvate ferredoxin oxidoreductase beta subunit C terminal PFO_beta_C PF12367.8 66 pNZ_AAFJ01000010_00075 - 285 0.064 13.4 1.6 2 2 0.52 4.6e+03 -2.2 0.1 46 57 253 264 242 269 0.81 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Phage_Treg PF04761.12 57 pNZ_AAFJ01000010_00075 - 285 0.085 13.0 1.7 1 3 1 9.2e+03 -3.2 0.0 41 54 44 57 42 58 0.68 Lactococcus bacteriophage putative transcription regulator Phage_Treg PF04761.12 57 pNZ_AAFJ01000010_00075 - 285 0.085 13.0 1.7 2 3 0.17 1.5e+03 -0.7 0.1 18 26 126 134 111 146 0.70 Lactococcus bacteriophage putative transcription regulator Phage_Treg PF04761.12 57 pNZ_AAFJ01000010_00075 - 285 0.085 13.0 1.7 3 3 3.7e-05 0.33 11.1 0.0 8 48 165 200 160 208 0.77 Lactococcus bacteriophage putative transcription regulator AAA_25 PF13481.6 194 pNZ_AAFJ01000010_00076 - 237 1.7e-18 66.9 0.0 1 1 8.6e-22 2.2e-18 66.5 0.0 31 193 28 183 9 184 0.86 AAA domain PhoH PF02562.16 205 pNZ_AAFJ01000010_00076 - 237 0.00097 18.6 0.0 1 1 6.8e-07 0.0017 17.8 0.0 18 52 29 63 12 66 0.86 PhoH-like protein DnaB_C PF03796.15 255 pNZ_AAFJ01000010_00076 - 237 0.0021 17.5 0.0 1 1 1.1e-06 0.0027 17.1 0.0 15 109 26 116 15 157 0.77 DnaB-like helicase C terminal domain ATPase PF06745.13 231 pNZ_AAFJ01000010_00076 - 237 0.041 13.2 0.0 1 1 1.9e-05 0.049 13.0 0.0 16 76 27 88 19 215 0.67 KaiC IstB_IS21 PF01695.17 178 pNZ_AAFJ01000010_00076 - 237 0.045 13.5 0.0 1 2 5.1e-05 0.13 12.0 0.0 30 79 11 64 3 93 0.73 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pNZ_AAFJ01000010_00076 - 237 0.045 13.5 0.0 2 2 1.2 3e+03 -2.2 0.0 101 117 125 141 117 169 0.63 IstB-like ATP binding protein NACHT PF05729.12 166 pNZ_AAFJ01000010_00076 - 237 0.17 11.8 0.0 1 2 0.00017 0.45 10.4 0.0 9 74 39 98 32 181 0.77 NACHT domain NACHT PF05729.12 166 pNZ_AAFJ01000010_00076 - 237 0.17 11.8 0.0 2 2 0.59 1.5e+03 -1.1 0.0 18 44 156 181 153 192 0.79 NACHT domain ResIII PF04851.15 171 pNZ_AAFJ01000010_00076 - 237 0.23 11.4 2.5 1 1 0.00047 1.2 9.1 2.4 22 66 28 81 5 179 0.73 Type III restriction enzyme, res subunit HTH_3 PF01381.22 55 pNZ_AAFJ01000010_00077 - 117 1.2e-06 28.5 0.0 1 1 5.2e-10 1.9e-06 27.8 0.0 1 46 10 55 10 60 0.94 Helix-turn-helix HTH_19 PF12844.7 65 pNZ_AAFJ01000010_00077 - 117 1.2e-05 25.2 0.7 1 2 4.6e-09 1.7e-05 24.8 0.0 2 63 8 69 7 71 0.90 Helix-turn-helix domain HTH_19 PF12844.7 65 pNZ_AAFJ01000010_00077 - 117 1.2e-05 25.2 0.7 2 2 4.3 1.5e+04 -3.9 0.1 3 8 107 112 105 113 0.62 Helix-turn-helix domain TACC_C PF05010.14 201 pNZ_AAFJ01000010_00077 - 117 0.013 15.2 0.1 1 1 4.5e-06 0.016 15.0 0.1 13 104 13 114 4 117 0.73 Transforming acidic coiled-coil-containing protein (TACC), C-terminal T3SchapCesA PF11439.8 95 pNZ_AAFJ01000010_00077 - 117 0.11 12.7 0.4 1 2 0.28 1e+03 -0.1 0.0 16 60 12 33 4 45 0.53 Type III secretion system filament chaperone CesA T3SchapCesA PF11439.8 95 pNZ_AAFJ01000010_00077 - 117 0.11 12.7 0.4 2 2 0.00012 0.43 10.8 0.1 21 56 47 82 40 114 0.80 Type III secretion system filament chaperone CesA HTH_31 PF13560.6 64 pNZ_AAFJ01000010_00077 - 117 0.13 12.6 0.0 1 1 6.2e-05 0.22 11.9 0.0 10 46 14 49 10 55 0.83 Helix-turn-helix domain Toprim_3 PF13362.6 95 pNZ_AAFJ01000010_00078 - 376 5.2e-09 36.3 0.0 1 1 9.2e-13 8.2e-09 35.7 0.0 3 94 264 365 262 366 0.83 Toprim domain Toprim_4 PF13662.6 89 pNZ_AAFJ01000010_00078 - 376 0.017 15.6 0.1 1 1 3.9e-06 0.035 14.6 0.1 2 80 262 336 261 341 0.89 Toprim domain AAA_25 PF13481.6 194 pNZ_AAFJ01000010_00079 - 597 1e-15 57.8 0.0 1 1 6.8e-19 2e-15 56.9 0.0 30 193 30 175 18 176 0.85 AAA domain DnaB_C PF03796.15 255 pNZ_AAFJ01000010_00079 - 597 0.0004 19.8 0.0 1 2 1.4e-06 0.0041 16.5 0.0 15 109 29 128 21 136 0.78 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pNZ_AAFJ01000010_00079 - 597 0.0004 19.8 0.0 2 2 0.0086 26 4.0 0.0 111 183 102 176 90 180 0.79 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 178 pNZ_AAFJ01000010_00079 - 597 0.0014 18.3 0.0 1 2 6.2e-06 0.018 14.7 0.0 46 87 32 73 19 86 0.87 IstB-like ATP binding protein IstB_IS21 PF01695.17 178 pNZ_AAFJ01000010_00079 - 597 0.0014 18.3 0.0 2 2 0.18 5.3e+02 0.2 0.0 97 118 109 130 97 169 0.73 IstB-like ATP binding protein ATPase PF06745.13 231 pNZ_AAFJ01000010_00079 - 597 0.013 14.8 0.0 1 2 1.6e-05 0.049 13.0 0.0 16 71 30 84 24 214 0.87 KaiC ATPase PF06745.13 231 pNZ_AAFJ01000010_00079 - 597 0.013 14.8 0.0 2 2 1 3e+03 -2.7 0.0 137 160 329 352 322 356 0.83 KaiC AAA PF00004.29 132 pNZ_AAFJ01000010_00079 - 597 0.07 13.6 0.1 1 2 0.0003 0.91 10.0 0.0 2 105 37 166 36 177 0.64 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 132 pNZ_AAFJ01000010_00079 - 597 0.07 13.6 0.1 2 2 0.36 1.1e+03 0.0 0.0 55 74 417 434 380 456 0.77 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 128 pNZ_AAFJ01000010_00079 - 597 0.34 11.0 3.4 1 1 0.00088 2.6 8.1 3.4 1 29 35 63 35 540 0.91 CobQ/CobB/MinD/ParA nucleotide binding domain SseC PF04888.12 317 pNZ_AAFJ01000010_00080 - 136 0.0012 18.6 1.4 1 2 3.3e-07 0.0012 18.6 1.4 27 77 8 57 6 60 0.94 Secretion system effector C (SseC) like family SseC PF04888.12 317 pNZ_AAFJ01000010_00080 - 136 0.0012 18.6 1.4 2 2 2.1 7.5e+03 -3.8 4.1 58 70 95 107 93 110 0.75 Secretion system effector C (SseC) like family Leu_Phe_trans PF03588.14 169 pNZ_AAFJ01000010_00080 - 136 0.034 13.7 0.1 1 1 1.3e-05 0.048 13.2 0.1 76 120 5 48 1 54 0.91 Leucyl/phenylalanyl-tRNA protein transferase T2SSF PF00482.23 125 pNZ_AAFJ01000010_00080 - 136 0.18 11.8 0.1 1 2 5e-05 0.18 11.8 0.1 85 123 17 55 13 57 0.88 Type II secretion system (T2SS), protein F T2SSF PF00482.23 125 pNZ_AAFJ01000010_00080 - 136 0.18 11.8 0.1 2 2 0.27 9.9e+02 -0.3 1.5 106 121 99 114 86 116 0.56 Type II secretion system (T2SS), protein F DUF3185 PF11381.8 59 pNZ_AAFJ01000010_00080 - 136 0.2 11.7 9.2 1 3 0.0004 1.4 9.0 0.0 37 57 26 46 9 56 0.86 Protein of unknown function (DUF3185) DUF3185 PF11381.8 59 pNZ_AAFJ01000010_00080 - 136 0.2 11.7 9.2 2 3 0.077 2.8e+02 1.6 1.2 1 10 98 107 98 112 0.83 Protein of unknown function (DUF3185) DUF3185 PF11381.8 59 pNZ_AAFJ01000010_00080 - 136 0.2 11.7 9.2 3 3 0.011 40 4.3 1.1 8 19 123 134 121 136 0.89 Protein of unknown function (DUF3185) DUF2207 PF09972.9 492 pNZ_AAFJ01000010_00080 - 136 5.6 5.6 16.6 1 2 2.1e-05 0.074 11.8 0.8 360 418 7 69 1 87 0.43 Predicted membrane protein (DUF2207) DUF2207 PF09972.9 492 pNZ_AAFJ01000010_00080 - 136 5.6 5.6 16.6 2 2 0.13 4.7e+02 -0.7 9.2 383 420 93 130 73 135 0.50 Predicted membrane protein (DUF2207) Resolvase PF00239.21 146 pNZ_AAFJ01000010_00081 - 205 9.9e-36 123.0 0.2 1 1 2.4e-39 1.4e-35 122.5 0.2 2 145 3 144 2 145 0.94 Resolvase, N terminal domain Mga PF05043.13 87 pNZ_AAFJ01000010_00081 - 205 0.012 16.1 2.2 1 2 2.5e-05 0.15 12.7 0.6 16 65 17 66 6 75 0.86 Mga helix-turn-helix domain Mga PF05043.13 87 pNZ_AAFJ01000010_00081 - 205 0.012 16.1 2.2 2 2 0.051 3e+02 2.1 0.0 43 83 152 191 150 194 0.82 Mga helix-turn-helix domain DUF2790 PF10976.8 78 pNZ_AAFJ01000010_00081 - 205 0.14 12.2 0.1 1 1 4.1e-05 0.24 11.4 0.1 12 48 10 45 1 49 0.76 Protein of unknown function (DUF2790) TrbC PF04956.13 99 pNZ_AAFJ01000010_00082 - 87 4.8e-15 55.6 8.1 1 1 3.1e-19 5.6e-15 55.4 8.1 19 99 5 85 2 85 0.95 TrbC/VIRB2 family CagE_TrbE_VirB PF03135.14 206 pNZ_AAFJ01000010_00083 - 923 2.5e-43 148.6 0.5 1 1 6.9e-47 6.2e-43 147.3 0.5 2 206 277 482 276 482 0.98 CagE, TrbE, VirB family, component of type IV transporter system VirB3 PF05101.13 84 pNZ_AAFJ01000010_00083 - 923 1.2e-19 70.3 2.0 1 1 2.4e-23 2.1e-19 69.5 2.0 3 83 4 84 2 85 0.95 Type IV secretory pathway, VirB3-like protein Phage_pRha PF09669.10 88 pNZ_AAFJ01000010_00084 - 206 2.7e-29 101.5 0.0 1 1 2.5e-33 4.5e-29 100.8 0.0 2 88 26 124 25 124 0.89 Phage regulatory protein Rha (Phage_pRha) T4SS PF07996.11 197 pNZ_AAFJ01000010_00085 - 245 2.3e-23 83.6 16.9 1 1 1.1e-26 2.8e-23 83.4 16.9 1 195 21 225 21 227 0.91 Type IV secretion system proteins CHASE4 PF05228.13 137 pNZ_AAFJ01000010_00085 - 245 0.05 13.8 5.7 1 3 0.0091 23 5.2 0.6 4 36 36 68 35 71 0.89 CHASE4 domain CHASE4 PF05228.13 137 pNZ_AAFJ01000010_00085 - 245 0.05 13.8 5.7 2 3 0.0004 1 9.6 0.2 2 58 75 138 74 175 0.79 CHASE4 domain CHASE4 PF05228.13 137 pNZ_AAFJ01000010_00085 - 245 0.05 13.8 5.7 3 3 0.37 9.4e+02 -0.0 0.0 92 122 147 178 138 192 0.86 CHASE4 domain KMP11 PF03037.16 90 pNZ_AAFJ01000010_00085 - 245 0.074 13.8 2.3 1 4 0.00012 0.31 11.8 0.0 8 54 18 64 12 92 0.85 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 pNZ_AAFJ01000010_00085 - 245 0.074 13.8 2.3 2 4 0.74 1.9e+03 -0.3 0.1 24 49 100 123 81 145 0.57 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 pNZ_AAFJ01000010_00085 - 245 0.074 13.8 2.3 3 4 0.95 2.4e+03 -0.6 0.2 51 51 167 167 115 209 0.59 Kinetoplastid membrane protein 11 KMP11 PF03037.16 90 pNZ_AAFJ01000010_00085 - 245 0.074 13.8 2.3 4 4 1 2.6e+03 -0.7 0.2 12 12 201 201 156 238 0.59 Kinetoplastid membrane protein 11 AChE_tetra PF08674.10 37 pNZ_AAFJ01000010_00085 - 245 0.099 12.4 1.2 1 2 0.00019 0.5 10.1 0.1 6 29 43 66 41 72 0.92 Acetylcholinesterase tetramerisation domain AChE_tetra PF08674.10 37 pNZ_AAFJ01000010_00085 - 245 0.099 12.4 1.2 2 2 0.19 4.9e+02 0.5 0.1 15 35 123 143 121 145 0.88 Acetylcholinesterase tetramerisation domain zf-RING_6 PF14835.6 65 pNZ_AAFJ01000010_00085 - 245 0.12 12.2 0.1 1 2 0.00024 0.61 10.0 0.0 35 53 14 32 7 41 0.83 zf-RING of BARD1-type protein zf-RING_6 PF14835.6 65 pNZ_AAFJ01000010_00085 - 245 0.12 12.2 0.1 2 2 0.69 1.8e+03 -1.1 0.0 9 24 130 145 124 149 0.80 zf-RING of BARD1-type protein Med8 PF10232.9 232 pNZ_AAFJ01000010_00085 - 245 0.22 11.1 9.0 1 2 0.41 1.1e+03 -1.0 0.2 139 159 46 66 24 101 0.52 Mediator of RNA polymerase II transcription complex subunit 8 Med8 PF10232.9 232 pNZ_AAFJ01000010_00085 - 245 0.22 11.1 9.0 2 2 8.5e-06 0.022 14.4 3.9 123 205 146 228 143 244 0.81 Mediator of RNA polymerase II transcription complex subunit 8 PCRF PF03462.18 193 pNZ_AAFJ01000010_00085 - 245 0.25 11.2 11.7 1 2 0.001 2.7 7.8 0.4 12 82 29 99 22 123 0.54 PCRF domain PCRF PF03462.18 193 pNZ_AAFJ01000010_00085 - 245 0.25 11.2 11.7 2 2 0.0015 3.9 7.3 5.3 20 91 153 231 136 239 0.55 PCRF domain TrbL PF04610.14 215 pNZ_AAFJ01000010_00086 - 331 5.9e-33 114.4 25.5 1 1 1.8e-36 8.1e-33 114.0 25.5 1 212 40 245 40 279 0.91 TrbL/VirB6 plasmid conjugal transfer protein DUF2070 PF09843.9 564 pNZ_AAFJ01000010_00086 - 331 0.31 9.3 16.7 1 1 0.00011 0.47 8.7 16.7 20 125 135 248 117 263 0.79 Predicted membrane protein (DUF2070) AIM3 PF17096.5 88 pNZ_AAFJ01000010_00086 - 331 5.4 8.0 7.0 1 1 0.0021 9.6 7.2 7.0 7 35 281 309 278 312 0.92 Altered inheritance of mitochondria protein 3 DUF412 PF04217.13 141 pNZ_AAFJ01000010_00086 - 331 6.5 6.7 10.8 1 3 0.021 95 2.9 0.0 60 90 30 60 12 71 0.78 Protein of unknown function, DUF412 DUF412 PF04217.13 141 pNZ_AAFJ01000010_00086 - 331 6.5 6.7 10.8 2 3 0.0045 20 5.1 6.7 38 101 137 197 118 205 0.78 Protein of unknown function, DUF412 DUF412 PF04217.13 141 pNZ_AAFJ01000010_00086 - 331 6.5 6.7 10.8 3 3 1.2 5.5e+03 -2.8 0.0 59 79 227 251 204 252 0.61 Protein of unknown function, DUF412 VirB8 PF04335.13 214 pNZ_AAFJ01000010_00089 - 219 8.4e-50 169.6 0.1 1 1 1.1e-53 1e-49 169.3 0.1 5 214 10 216 7 216 0.92 VirB8 protein Wzz PF02706.15 92 pNZ_AAFJ01000010_00089 - 219 2.4 8.5 6.7 1 2 0.00031 2.8 8.3 3.2 8 51 17 60 11 124 0.63 Chain length determinant protein Wzz PF02706.15 92 pNZ_AAFJ01000010_00089 - 219 2.4 8.5 6.7 2 2 0.085 7.6e+02 0.5 0.1 42 64 159 186 158 203 0.62 Chain length determinant protein CagX PF03524.15 211 pNZ_AAFJ01000010_00090 - 316 2.3e-53 181.1 0.8 1 1 2.5e-57 4.6e-53 180.1 0.8 2 211 29 270 28 270 0.92 Conjugal transfer protein TrbI PF03743.14 187 pNZ_AAFJ01000010_00091 - 382 1.3e-46 158.8 0.1 1 2 0.39 3.5e+03 -2.4 0.3 119 154 120 160 111 164 0.52 Bacterial conjugation TrbI-like protein TrbI PF03743.14 187 pNZ_AAFJ01000010_00091 - 382 1.3e-46 158.8 0.1 2 2 1.5e-50 1.3e-46 158.8 0.1 1 187 191 372 191 372 0.98 Bacterial conjugation TrbI-like protein DUF5345 PF17280.2 77 pNZ_AAFJ01000010_00091 - 382 0.17 11.8 0.2 1 1 3.8e-05 0.34 10.9 0.2 31 61 12 42 5 44 0.90 Family of unknown function (DUF5345) MORN_2 PF07661.13 22 pNZ_AAFJ01000010_00092 - 194 0.39 11.1 2.9 1 2 0.051 4.5e+02 1.7 0.1 8 22 138 152 134 152 0.81 MORN repeat variant MORN_2 PF07661.13 22 pNZ_AAFJ01000010_00092 - 194 0.39 11.1 2.9 2 2 0.00031 2.8 8.4 0.6 5 17 155 167 154 169 0.89 MORN repeat variant Ribosomal_S13 PF00416.22 128 pNZ_AAFJ01000010_00092 - 194 0.83 10.1 4.2 1 2 0.002 17 5.8 0.1 47 91 22 66 8 83 0.78 Ribosomal protein S13/S18 Ribosomal_S13 PF00416.22 128 pNZ_AAFJ01000010_00092 - 194 0.83 10.1 4.2 2 2 0.0036 32 4.9 1.4 37 72 155 190 146 194 0.80 Ribosomal protein S13/S18 T2SSE PF00437.20 273 pNZ_AAFJ01000010_00093 - 329 5.1e-54 183.2 0.0 1 1 1.2e-56 6.4e-54 182.8 0.0 6 269 14 311 9 314 0.94 Type II/IV secretion system protein AAA_22 PF13401.6 137 pNZ_AAFJ01000010_00093 - 329 4.9e-05 23.6 0.0 1 1 1.8e-07 9.4e-05 22.7 0.0 7 57 162 222 159 251 0.82 AAA domain ABC_tran PF00005.27 137 pNZ_AAFJ01000010_00093 - 329 0.00012 22.6 0.0 1 1 5.5e-07 0.00029 21.4 0.0 8 51 157 201 150 229 0.84 ABC transporter FtsK_SpoIIIE PF01580.18 243 pNZ_AAFJ01000010_00093 - 329 0.00021 20.7 0.0 1 1 6.5e-07 0.00034 20.0 0.0 28 60 146 181 125 183 0.79 FtsK/SpoIIIE family AAA_7 PF12775.7 181 pNZ_AAFJ01000010_00093 - 329 0.00062 19.3 0.0 1 1 2e-06 0.0011 18.6 0.0 19 58 146 185 130 196 0.85 P-loop containing dynein motor region AAA_23 PF13476.6 200 pNZ_AAFJ01000010_00093 - 329 0.0028 18.2 1.3 1 2 4.3 2.3e+03 -1.1 0.2 154 156 124 126 42 151 0.51 AAA domain AAA_23 PF13476.6 200 pNZ_AAFJ01000010_00093 - 329 0.0028 18.2 1.3 2 2 5.3e-06 0.0028 18.2 1.3 5 38 147 179 145 182 0.84 AAA domain TsaE PF02367.17 125 pNZ_AAFJ01000010_00093 - 329 0.003 17.5 0.0 1 1 1.2e-05 0.0064 16.5 0.0 11 45 150 186 142 194 0.77 Threonylcarbamoyl adenosine biosynthesis protein TsaE Pox_A32 PF04665.12 242 pNZ_AAFJ01000010_00093 - 329 0.003 17.0 0.0 1 1 9.2e-06 0.0048 16.4 0.0 15 36 162 183 145 209 0.85 Poxvirus A32 protein AAA_15 PF13175.6 369 pNZ_AAFJ01000010_00093 - 329 0.0035 17.1 2.5 1 2 0.21 1.1e+02 2.3 1.2 184 217 74 139 2 147 0.50 AAA ATPase domain AAA_15 PF13175.6 369 pNZ_AAFJ01000010_00093 - 329 0.0035 17.1 2.5 2 2 6.7e-06 0.0035 17.1 2.5 9 54 147 191 145 224 0.78 AAA ATPase domain AAA_24 PF13479.6 197 pNZ_AAFJ01000010_00093 - 329 0.0041 16.9 0.0 1 1 1.3e-05 0.0069 16.1 0.0 3 32 161 187 160 229 0.74 AAA domain Septin PF00735.18 281 pNZ_AAFJ01000010_00093 - 329 0.0043 16.4 0.0 1 1 1.4e-05 0.0072 15.6 0.0 5 33 161 189 157 209 0.78 Septin RNA_helicase PF00910.22 107 pNZ_AAFJ01000010_00093 - 329 0.012 16.0 0.0 1 1 8.1e-05 0.043 14.2 0.0 1 21 163 183 163 223 0.85 RNA helicase ATPase_2 PF01637.18 233 pNZ_AAFJ01000010_00093 - 329 0.013 15.4 0.0 1 1 3.9e-05 0.021 14.8 0.0 23 82 163 226 150 281 0.86 ATPase domain predominantly from Archaea NACHT PF05729.12 166 pNZ_AAFJ01000010_00093 - 329 0.015 15.2 0.0 1 1 4.8e-05 0.025 14.5 0.0 3 22 163 182 161 185 0.91 NACHT domain AAA_29 PF13555.6 61 pNZ_AAFJ01000010_00093 - 329 0.015 15.0 0.0 1 1 6.6e-05 0.035 13.9 0.0 8 39 148 177 139 183 0.74 P-loop containing region of AAA domain DUF87 PF01935.17 227 pNZ_AAFJ01000010_00093 - 329 0.015 15.4 1.0 1 2 2.6 1.4e+03 -0.8 0.1 152 187 105 138 37 158 0.65 Helicase HerA, central domain DUF87 PF01935.17 227 pNZ_AAFJ01000010_00093 - 329 0.015 15.4 1.0 2 2 5.6e-05 0.03 14.4 0.2 24 45 161 182 138 193 0.82 Helicase HerA, central domain DUF815 PF05673.13 250 pNZ_AAFJ01000010_00093 - 329 0.021 14.0 0.0 1 1 5.9e-05 0.031 13.4 0.0 11 76 117 183 107 209 0.79 Protein of unknown function (DUF815) DEAD PF00270.29 176 pNZ_AAFJ01000010_00093 - 329 0.021 14.6 0.0 1 1 5.7e-05 0.03 14.1 0.0 11 32 157 177 144 283 0.83 DEAD/DEAH box helicase Mg_chelatase PF01078.21 207 pNZ_AAFJ01000010_00093 - 329 0.023 14.1 0.0 1 2 2 1.1e+03 -1.2 0.0 40 59 84 103 81 125 0.82 Magnesium chelatase, subunit ChlI Mg_chelatase PF01078.21 207 pNZ_AAFJ01000010_00093 - 329 0.023 14.1 0.0 2 2 0.0002 0.1 11.9 0.0 7 49 145 187 139 227 0.82 Magnesium chelatase, subunit ChlI ATP_bind_1 PF03029.17 241 pNZ_AAFJ01000010_00093 - 329 0.027 14.3 0.0 1 1 9.4e-05 0.049 13.4 0.0 1 23 165 187 165 193 0.86 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 167 pNZ_AAFJ01000010_00093 - 329 0.045 13.7 0.0 1 1 0.00014 0.072 13.0 0.0 64 121 127 182 110 199 0.67 RsgA GTPase TrwB_AAD_bind PF10412.9 386 pNZ_AAFJ01000010_00093 - 329 0.046 12.6 0.0 1 1 0.00015 0.079 11.8 0.0 17 45 162 190 156 221 0.78 Type IV secretion-system coupling protein DNA-binding domain Dynamin_N PF00350.23 168 pNZ_AAFJ01000010_00093 - 329 0.051 13.6 0.0 1 2 1.2 6.2e+02 0.3 0.0 21 53 84 115 25 156 0.64 Dynamin family Dynamin_N PF00350.23 168 pNZ_AAFJ01000010_00093 - 329 0.051 13.6 0.0 2 2 0.00075 0.4 10.7 0.0 1 32 163 192 163 221 0.88 Dynamin family ResIII PF04851.15 171 pNZ_AAFJ01000010_00093 - 329 0.055 13.5 0.1 1 1 0.00023 0.12 12.4 0.1 5 46 142 182 137 224 0.87 Type III restriction enzyme, res subunit SMC_N PF02463.19 220 pNZ_AAFJ01000010_00093 - 329 0.063 12.7 0.1 1 1 0.00022 0.12 11.8 0.1 7 44 146 180 137 206 0.76 RecF/RecN/SMC N terminal domain PduV-EutP PF10662.9 143 pNZ_AAFJ01000010_00093 - 329 0.07 12.9 0.0 1 2 0.0013 0.7 9.6 0.0 2 22 161 181 160 204 0.88 Ethanolamine utilisation - propanediol utilisation PduV-EutP PF10662.9 143 pNZ_AAFJ01000010_00093 - 329 0.07 12.9 0.0 2 2 0.84 4.4e+02 0.5 0.0 76 109 288 321 275 326 0.80 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 130 pNZ_AAFJ01000010_00093 - 329 0.073 13.6 0.0 1 1 0.00027 0.14 12.7 0.0 1 93 163 278 163 292 0.56 AAA domain PRK PF00485.18 197 pNZ_AAFJ01000010_00093 - 329 0.089 12.5 0.0 1 1 0.00031 0.16 11.7 0.0 2 37 163 197 162 224 0.68 Phosphoribulokinase / Uridine kinase family MobB PF03205.14 133 pNZ_AAFJ01000010_00093 - 329 0.09 12.7 0.0 1 1 0.00036 0.19 11.6 0.0 2 22 163 183 162 199 0.88 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.6 131 pNZ_AAFJ01000010_00093 - 329 0.091 12.8 0.3 1 1 0.0004 0.21 11.6 0.0 3 50 161 208 160 241 0.76 AAA domain GvpD PF07088.11 484 pNZ_AAFJ01000010_00093 - 329 0.093 11.3 0.0 1 1 0.00022 0.12 11.0 0.0 8 43 158 193 150 260 0.74 GvpD gas vesicle protein Sigma54_activat PF00158.26 168 pNZ_AAFJ01000010_00093 - 329 0.1 12.3 0.0 1 1 0.00045 0.24 11.1 0.0 13 43 151 181 142 200 0.81 Sigma-54 interaction domain Roc PF08477.13 120 pNZ_AAFJ01000010_00093 - 329 0.12 12.6 0.1 1 1 0.00066 0.35 11.1 0.0 2 21 163 182 162 210 0.81 Ras of Complex, Roc, domain of DAPkinase AAA_33 PF13671.6 143 pNZ_AAFJ01000010_00093 - 329 0.13 12.5 0.0 1 1 0.00039 0.21 11.8 0.0 2 20 163 181 163 240 0.90 AAA domain YscJ_FliF PF01514.17 194 pNZ_AAFJ01000010_00094 - 240 0.019 14.7 2.6 1 2 0.00021 0.31 10.7 0.1 26 64 47 85 39 109 0.85 Secretory protein of YscJ/FliF family YscJ_FliF PF01514.17 194 pNZ_AAFJ01000010_00094 - 240 0.019 14.7 2.6 2 2 0.03 44 3.6 0.3 155 179 203 227 189 235 0.84 Secretory protein of YscJ/FliF family Njmu-R1 PF15053.6 353 pNZ_AAFJ01000010_00094 - 240 0.028 13.5 1.6 1 1 3.4e-05 0.051 12.7 1.6 121 227 3 109 1 128 0.78 Mjmu-R1-like protein family FtsQ PF03799.15 117 pNZ_AAFJ01000010_00094 - 240 0.18 12.7 0.8 1 3 5.6 8.4e+03 -2.4 0.0 43 47 37 41 6 67 0.60 Cell division protein FtsQ FtsQ PF03799.15 117 pNZ_AAFJ01000010_00094 - 240 0.18 12.7 0.8 2 3 0.0012 1.8 9.4 0.0 58 102 115 158 75 170 0.75 Cell division protein FtsQ FtsQ PF03799.15 117 pNZ_AAFJ01000010_00094 - 240 0.18 12.7 0.8 3 3 0.47 7e+02 1.1 0.0 38 63 209 233 184 238 0.72 Cell division protein FtsQ Halogen_Hydrol PF10112.9 191 pNZ_AAFJ01000010_00094 - 240 1.1 9.2 6.9 1 2 0.0028 4.3 7.3 0.8 66 98 20 52 3 76 0.81 5-bromo-4-chloroindolyl phosphate hydrolysis protein Halogen_Hydrol PF10112.9 191 pNZ_AAFJ01000010_00094 - 240 1.1 9.2 6.9 2 2 0.012 17 5.3 0.7 48 79 196 227 141 233 0.86 5-bromo-4-chloroindolyl phosphate hydrolysis protein Flagellin_N PF00669.20 139 pNZ_AAFJ01000010_00094 - 240 2.1 8.5 7.4 1 2 0.0012 1.9 8.6 0.4 52 104 8 57 3 94 0.83 Bacterial flagellin N-terminal helical region Flagellin_N PF00669.20 139 pNZ_AAFJ01000010_00094 - 240 2.1 8.5 7.4 2 2 0.076 1.1e+02 2.8 1.7 83 120 188 226 185 233 0.82 Bacterial flagellin N-terminal helical region SlyX PF04102.12 67 pNZ_AAFJ01000010_00094 - 240 2.2 9.0 7.3 1 2 0.0031 4.6 7.9 0.8 7 53 5 51 4 64 0.78 SlyX SlyX PF04102.12 67 pNZ_AAFJ01000010_00094 - 240 2.2 9.0 7.3 2 2 0.038 57 4.4 0.2 30 50 208 228 201 235 0.77 SlyX DUF1664 PF07889.12 124 pNZ_AAFJ01000010_00094 - 240 2.4 8.2 10.7 1 3 0.0026 3.9 7.5 0.7 71 111 6 46 3 54 0.79 Protein of unknown function (DUF1664) DUF1664 PF07889.12 124 pNZ_AAFJ01000010_00094 - 240 2.4 8.2 10.7 2 3 1.3 1.9e+03 -1.2 0.1 80 103 65 88 47 94 0.59 Protein of unknown function (DUF1664) DUF1664 PF07889.12 124 pNZ_AAFJ01000010_00094 - 240 2.4 8.2 10.7 3 3 0.0072 11 6.1 1.2 48 75 209 236 191 240 0.68 Protein of unknown function (DUF1664) FlaC_arch PF05377.11 55 pNZ_AAFJ01000010_00094 - 240 5.7 7.4 10.3 1 3 0.0027 4 7.9 0.5 1 35 9 43 5 47 0.90 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pNZ_AAFJ01000010_00094 - 240 5.7 7.4 10.3 2 3 2.8 4.2e+03 -1.8 0.1 19 39 70 90 55 94 0.61 Flagella accessory protein C (FlaC) FlaC_arch PF05377.11 55 pNZ_AAFJ01000010_00094 - 240 5.7 7.4 10.3 3 3 0.022 33 5.0 0.6 17 39 209 231 198 236 0.75 Flagella accessory protein C (FlaC) HrpB7 PF09486.10 157 pNZ_AAFJ01000010_00094 - 240 5.9 7.3 7.8 1 3 0.0011 1.6 9.1 0.6 97 136 5 44 2 54 0.82 Bacterial type III secretion protein (HrpB7) HrpB7 PF09486.10 157 pNZ_AAFJ01000010_00094 - 240 5.9 7.3 7.8 2 3 6.9 1e+04 -3.3 0.1 109 115 154 160 143 170 0.40 Bacterial type III secretion protein (HrpB7) HrpB7 PF09486.10 157 pNZ_AAFJ01000010_00094 - 240 5.9 7.3 7.8 3 3 0.13 2e+02 2.3 0.2 85 107 208 230 190 235 0.65 Bacterial type III secretion protein (HrpB7) Vac_Fusion PF02346.16 56 pNZ_AAFJ01000010_00094 - 240 6 6.6 7.8 1 3 0.00083 1.2 8.8 0.8 3 36 4 37 2 43 0.91 Chordopoxvirus multifunctional envelope protein A27 Vac_Fusion PF02346.16 56 pNZ_AAFJ01000010_00094 - 240 6 6.6 7.8 2 3 0.23 3.4e+02 0.9 0.1 25 33 146 154 141 169 0.53 Chordopoxvirus multifunctional envelope protein A27 Vac_Fusion PF02346.16 56 pNZ_AAFJ01000010_00094 - 240 6 6.6 7.8 3 3 1.9 2.9e+03 -2.0 0.1 28 28 230 230 206 240 0.51 Chordopoxvirus multifunctional envelope protein A27 FapA PF03961.13 454 pNZ_AAFJ01000010_00094 - 240 6.9 5.2 21.5 1 2 7.7e-05 0.11 11.0 9.9 333 412 11 95 2 154 0.82 Flagellar Assembly Protein A FapA PF03961.13 454 pNZ_AAFJ01000010_00094 - 240 6.9 5.2 21.5 2 2 0.39 5.8e+02 -1.2 5.5 336 393 190 228 128 240 0.41 Flagellar Assembly Protein A BST2 PF16716.5 91 pNZ_AAFJ01000010_00094 - 240 6.9 7.3 17.4 1 3 0.00093 1.4 9.6 3.4 12 73 3 63 1 81 0.81 Bone marrow stromal antigen 2 BST2 PF16716.5 91 pNZ_AAFJ01000010_00094 - 240 6.9 7.3 17.4 2 3 4.3 6.5e+03 -2.2 0.1 48 62 152 164 141 171 0.44 Bone marrow stromal antigen 2 BST2 PF16716.5 91 pNZ_AAFJ01000010_00094 - 240 6.9 7.3 17.4 3 3 0.009 13 6.4 2.3 54 84 197 227 184 233 0.58 Bone marrow stromal antigen 2 T4SS-DNA_transf PF02534.14 469 pNZ_AAFJ01000010_00095 - 606 1.3e-109 367.1 0.0 1 1 3.9e-113 1.8e-109 366.7 0.0 2 461 93 572 82 578 0.86 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 126 pNZ_AAFJ01000010_00095 - 606 6.2e-27 94.1 0.0 1 1 2.4e-30 1.1e-26 93.3 0.0 2 125 414 535 413 536 0.89 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.9 386 pNZ_AAFJ01000010_00095 - 606 1.4e-18 67.0 0.0 1 2 1.3e-06 0.0058 15.6 0.0 44 127 158 253 132 272 0.74 Type IV secretion-system coupling protein DNA-binding domain TrwB_AAD_bind PF10412.9 386 pNZ_AAFJ01000010_00095 - 606 1.4e-18 67.0 0.0 2 2 7.3e-17 3.3e-13 49.3 0.0 158 369 322 538 301 550 0.78 Type IV secretion-system coupling protein DNA-binding domain BRI3BP PF14965.6 180 pNZ_AAFJ01000010_00095 - 606 0.22 11.0 2.3 1 2 5.9e-05 0.26 10.8 1.2 72 144 6 77 2 100 0.79 Negative regulator of p53/TP53 BRI3BP PF14965.6 180 pNZ_AAFJ01000010_00095 - 606 0.22 11.0 2.3 2 2 1.3 6e+03 -3.4 0.0 8 27 490 509 488 520 0.81 Negative regulator of p53/TP53 Cag12 PF13117.6 97 pNZ_AAFJ01000010_00096 - 136 1.1e-16 61.2 0.1 1 1 2.4e-20 1.4e-16 60.7 0.1 6 94 29 115 25 118 0.92 Cag pathogenicity island protein Cag12 LPAM_2 PF13627.6 23 pNZ_AAFJ01000010_00096 - 136 0.027 14.3 3.2 1 1 7.4e-06 0.044 13.6 3.2 2 19 7 24 6 24 0.90 Prokaryotic lipoprotein-attachment site DUF5061 PF16587.5 103 pNZ_AAFJ01000010_00096 - 136 0.15 12.2 0.1 1 1 3.1e-05 0.19 11.8 0.1 2 34 8 40 7 91 0.82 17 kDa common-antigen outer membrane protein TrbM PF07424.11 156 pNZ_AAFJ01000010_00097 - 197 6.3e-39 133.4 1.3 1 1 4.5e-43 8e-39 133.1 1.3 2 148 23 181 22 190 0.87 TrbM Latarcin PF10279.9 81 pNZ_AAFJ01000010_00098 - 296 0.016 15.6 1.6 1 1 0.00029 0.66 10.4 1.6 22 76 56 184 14 189 0.78 Latarcin precursor Lipase_GDSL PF00657.22 200 pNZ_AAFJ01000010_00098 - 296 0.033 14.2 1.1 1 1 3e-05 0.067 13.2 0.9 48 131 27 170 15 219 0.75 GDSL-like Lipase/Acylhydrolase T3SS_basalb_I PF17001.5 96 pNZ_AAFJ01000010_00098 - 296 0.078 13.6 4.2 1 2 0.00077 1.7 9.3 0.5 3 62 20 91 18 107 0.70 Type III secretion basal body protein I, YscI, HrpB, PscI T3SS_basalb_I PF17001.5 96 pNZ_AAFJ01000010_00098 - 296 0.078 13.6 4.2 2 2 0.019 44 4.8 0.1 2 43 158 208 157 219 0.55 Type III secretion basal body protein I, YscI, HrpB, PscI Cor1 PF04803.12 132 pNZ_AAFJ01000010_00098 - 296 0.15 12.3 22.3 1 3 0.0051 11 6.2 4.9 5 53 3 51 1 86 0.76 Cor1/Xlr/Xmr conserved region Cor1 PF04803.12 132 pNZ_AAFJ01000010_00098 - 296 0.15 12.3 22.3 2 3 6.9e-05 0.15 12.2 6.2 45 124 97 179 82 182 0.83 Cor1/Xlr/Xmr conserved region Cor1 PF04803.12 132 pNZ_AAFJ01000010_00098 - 296 0.15 12.3 22.3 3 3 0.095 2.1e+02 2.1 0.5 7 40 178 211 172 218 0.61 Cor1/Xlr/Xmr conserved region DUF1451 PF07295.11 147 pNZ_AAFJ01000010_00098 - 296 0.25 11.3 8.8 1 3 0.05 1.1e+02 2.8 0.4 35 89 22 76 2 88 0.75 Zinc-ribbon containing domain DUF1451 PF07295.11 147 pNZ_AAFJ01000010_00098 - 296 0.25 11.3 8.8 2 3 0.29 6.4e+02 0.3 0.1 9 45 62 96 56 121 0.67 Zinc-ribbon containing domain DUF1451 PF07295.11 147 pNZ_AAFJ01000010_00098 - 296 0.25 11.3 8.8 3 3 8.8e-05 0.2 11.7 2.5 6 100 118 205 111 215 0.87 Zinc-ribbon containing domain TipAS PF07739.13 117 pNZ_AAFJ01000010_00098 - 296 0.36 11.4 6.4 1 3 0.24 5.3e+02 1.2 0.7 15 44 27 56 13 88 0.57 TipAS antibiotic-recognition domain TipAS PF07739.13 117 pNZ_AAFJ01000010_00098 - 296 0.36 11.4 6.4 2 3 0.012 27 5.4 0.1 26 75 89 138 56 149 0.68 TipAS antibiotic-recognition domain TipAS PF07739.13 117 pNZ_AAFJ01000010_00098 - 296 0.36 11.4 6.4 3 3 0.004 9 6.9 0.2 19 71 156 208 147 224 0.85 TipAS antibiotic-recognition domain Exonuc_VII_L PF02601.15 304 pNZ_AAFJ01000010_00098 - 296 0.37 10.3 10.9 1 2 0.0064 14 5.1 3.2 159 242 15 77 1 119 0.29 Exonuclease VII, large subunit Exonuc_VII_L PF02601.15 304 pNZ_AAFJ01000010_00098 - 296 0.37 10.3 10.9 2 2 0.00029 0.65 9.5 2.7 144 240 105 204 96 279 0.65 Exonuclease VII, large subunit OmpH PF03938.14 138 pNZ_AAFJ01000010_00098 - 296 2.8 8.3 16.8 1 3 0.0016 3.5 8.0 3.1 23 103 15 108 3 115 0.72 Outer membrane protein (OmpH-like) OmpH PF03938.14 138 pNZ_AAFJ01000010_00098 - 296 2.8 8.3 16.8 2 3 0.0017 3.8 7.9 2.6 35 117 137 222 111 233 0.62 Outer membrane protein (OmpH-like) OmpH PF03938.14 138 pNZ_AAFJ01000010_00098 - 296 2.8 8.3 16.8 3 3 0.84 1.9e+03 -0.9 0.1 16 32 244 260 232 288 0.54 Outer membrane protein (OmpH-like) Topoisom_bac PF01131.20 413 pNZ_AAFJ01000010_00100 - 723 4.4e-96 322.4 2.6 1 1 5.3e-99 5.6e-96 322.1 2.6 3 413 154 591 152 591 0.93 DNA topoisomerase Toprim PF01751.22 103 pNZ_AAFJ01000010_00100 - 723 8.4e-12 45.2 0.4 1 2 3.3e-14 3.4e-11 43.3 0.1 1 101 2 134 2 136 0.86 Toprim domain Toprim PF01751.22 103 pNZ_AAFJ01000010_00100 - 723 8.4e-12 45.2 0.4 2 2 6.3 6.6e+03 -2.6 0.0 61 77 497 513 465 516 0.67 Toprim domain zf-C4_Topoisom PF01396.19 39 pNZ_AAFJ01000010_00100 - 723 1.2e-07 31.3 19.1 1 2 7.7e-07 0.00081 19.1 3.8 2 27 619 645 618 656 0.88 Topoisomerase DNA binding C4 zinc finger zf-C4_Topoisom PF01396.19 39 pNZ_AAFJ01000010_00100 - 723 1.2e-07 31.3 19.1 2 2 2.3e-06 0.0024 17.6 7.4 3 37 674 713 672 715 0.85 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 35 pNZ_AAFJ01000010_00100 - 723 0.00043 20.5 0.2 1 2 0.0037 3.9 7.8 0.0 18 34 615 631 610 632 0.78 zinc-ribbon zinc_ribbon_9 PF14369.6 35 pNZ_AAFJ01000010_00100 - 723 0.00043 20.5 0.2 2 2 0.00065 0.69 10.2 0.0 20 32 671 683 661 685 0.78 zinc-ribbon Zn_ribbon_SprT PF17283.2 38 pNZ_AAFJ01000010_00100 - 723 0.014 15.3 1.1 1 2 0.43 4.6e+02 0.8 0.1 7 13 621 627 614 632 0.64 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 pNZ_AAFJ01000010_00100 - 723 0.014 15.3 1.1 2 2 0.00011 0.11 12.4 0.2 4 27 672 699 669 704 0.93 SprT-like zinc ribbon domain Toprim_2 PF13155.6 90 pNZ_AAFJ01000010_00100 - 723 0.036 14.5 0.3 1 2 0.00075 0.79 10.2 0.1 37 75 91 131 83 152 0.82 Toprim-like Toprim_2 PF13155.6 90 pNZ_AAFJ01000010_00100 - 723 0.036 14.5 0.3 2 2 0.43 4.5e+02 1.3 0.0 33 58 488 513 448 516 0.80 Toprim-like HTH_34 PF13601.6 80 pNZ_AAFJ01000010_00100 - 723 0.074 13.2 0.5 1 2 0.84 8.9e+02 0.2 0.0 44 62 465 481 456 496 0.68 Winged helix DNA-binding domain HTH_34 PF13601.6 80 pNZ_AAFJ01000010_00100 - 723 0.074 13.2 0.5 2 2 0.00073 0.77 10.0 0.1 32 57 524 549 519 558 0.84 Winged helix DNA-binding domain Zn-ribbon_8 PF09723.10 40 pNZ_AAFJ01000010_00100 - 723 0.077 13.1 0.7 1 2 0.033 35 4.6 0.0 18 34 609 626 603 632 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 pNZ_AAFJ01000010_00100 - 723 0.077 13.1 0.7 2 2 0.011 11 6.2 0.1 5 21 672 688 665 693 0.77 Zinc ribbon domain zinc_ribbon_4 PF13717.6 36 pNZ_AAFJ01000010_00100 - 723 0.11 12.4 2.3 1 2 0.017 18 5.3 0.2 2 12 618 628 618 629 0.85 zinc-ribbon domain zinc_ribbon_4 PF13717.6 36 pNZ_AAFJ01000010_00100 - 723 0.11 12.4 2.3 2 2 0.01 11 6.1 0.1 4 17 674 687 672 694 0.84 zinc-ribbon domain Toprim_4 PF13662.6 89 pNZ_AAFJ01000010_00100 - 723 0.12 12.8 0.1 1 2 0.00075 0.79 10.2 0.0 49 76 89 120 69 132 0.71 Toprim domain Toprim_4 PF13662.6 89 pNZ_AAFJ01000010_00100 - 723 0.12 12.8 0.1 2 2 4.7 4.9e+03 -1.9 0.0 29 68 482 513 477 515 0.67 Toprim domain zf-ribbon_3 PF13248.6 26 pNZ_AAFJ01000010_00100 - 723 0.18 11.3 1.0 1 2 0.012 12 5.4 0.1 2 11 618 628 617 633 0.74 zinc-ribbon domain zf-ribbon_3 PF13248.6 26 pNZ_AAFJ01000010_00100 - 723 0.18 11.3 1.0 2 2 0.038 40 3.8 0.1 1 8 671 678 671 687 0.83 zinc-ribbon domain TRAF6_Z2 PF18048.1 27 pNZ_AAFJ01000010_00100 - 723 0.44 10.7 3.7 1 3 1.6 1.7e+03 -0.8 0.0 18 25 264 271 262 272 0.85 TNF receptor-associated factor 6 zinc finger 2 TRAF6_Z2 PF18048.1 27 pNZ_AAFJ01000010_00100 - 723 0.44 10.7 3.7 2 3 1.9 2e+03 -1.0 0.0 5 10 620 625 618 628 0.81 TNF receptor-associated factor 6 zinc finger 2 TRAF6_Z2 PF18048.1 27 pNZ_AAFJ01000010_00100 - 723 0.44 10.7 3.7 3 3 0.0011 1.1 9.4 0.4 5 13 674 682 671 684 0.89 TNF receptor-associated factor 6 zinc finger 2 Zn_Tnp_IS1 PF03811.13 35 pNZ_AAFJ01000010_00100 - 723 0.46 10.2 3.3 1 2 0.069 73 3.2 0.2 6 12 619 625 617 627 0.88 InsA N-terminal domain Zn_Tnp_IS1 PF03811.13 35 pNZ_AAFJ01000010_00100 - 723 0.46 10.2 3.3 2 2 0.0048 5.1 6.9 0.4 7 33 674 701 672 703 0.89 InsA N-terminal domain zf-HIT PF04438.16 30 pNZ_AAFJ01000010_00100 - 723 0.48 10.3 4.2 1 2 0.045 47 4.0 0.3 11 23 616 628 614 643 0.83 HIT zinc finger zf-HIT PF04438.16 30 pNZ_AAFJ01000010_00100 - 723 0.48 10.3 4.2 2 2 0.0056 5.9 6.8 0.4 11 20 670 679 667 682 0.86 HIT zinc finger zf_C2H2_10 PF18414.1 26 pNZ_AAFJ01000010_00100 - 723 2.6 7.7 7.4 1 2 0.01 11 5.7 1.3 4 10 620 626 618 628 0.85 C2H2 type zinc-finger zf_C2H2_10 PF18414.1 26 pNZ_AAFJ01000010_00100 - 723 2.6 7.7 7.4 2 2 0.023 25 4.5 0.5 2 9 672 679 671 681 0.88 C2H2 type zinc-finger PIN_4 PF13638.6 131 pNZ_AAFJ01000010_00100 - 723 6 7.2 6.6 1 3 3.2 3.4e+03 -1.7 0.0 28 64 204 241 200 277 0.52 PIN domain PIN_4 PF13638.6 131 pNZ_AAFJ01000010_00100 - 723 6 7.2 6.6 2 3 0.00077 0.81 10.0 1.0 60 126 468 554 441 558 0.75 PIN domain PIN_4 PF13638.6 131 pNZ_AAFJ01000010_00100 - 723 6 7.2 6.6 3 3 8.5 8.9e+03 -3.1 0.1 79 91 607 619 574 620 0.47 PIN domain zf-H2C2_2 PF13465.6 26 pNZ_AAFJ01000010_00100 - 723 8.1 7.1 8.1 1 2 0.064 67 4.2 0.1 9 24 613 628 609 630 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 pNZ_AAFJ01000010_00100 - 723 8.1 7.1 8.1 2 2 0.012 12 6.5 0.7 11 24 669 682 665 683 0.82 Zinc-finger double domain TetR_C_5 PF08360.11 131 pNZ_AAFJ01000010_00102 - 85 0.012 15.8 4.6 1 1 7.2e-07 0.013 15.7 4.6 8 85 6 84 1 85 0.75 QacR-like protein, C-terminal region YopX PF09643.10 131 pNZ_AAFJ01000010_00103 - 196 2.1e-13 50.5 2.2 1 1 1.9e-17 3.4e-13 49.8 2.2 46 130 46 140 12 141 0.76 YopX protein YopX PF09643.10 131 pNZ_AAFJ01000010_00104 - 141 1.7e-05 24.9 0.1 1 1 2.2e-09 2e-05 24.7 0.1 48 89 54 92 7 126 0.76 YopX protein TAFII28 PF04719.14 86 pNZ_AAFJ01000010_00104 - 141 0.072 13.2 0.0 1 2 0.0052 47 4.2 0.0 52 66 73 87 68 106 0.77 hTAFII28-like protein conserved region TAFII28 PF04719.14 86 pNZ_AAFJ01000010_00104 - 141 0.072 13.2 0.0 2 2 0.00065 5.9 7.1 0.0 11 36 110 135 104 141 0.87 hTAFII28-like protein conserved region CRISPR_Cas2 PF09827.9 76 pNZ_AAFJ01000010_00106 - 140 0.00069 19.7 1.5 1 2 3.7e-07 0.0022 18.1 0.0 5 54 7 67 3 83 0.78 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pNZ_AAFJ01000010_00106 - 140 0.00069 19.7 1.5 2 2 0.15 8.8e+02 0.2 0.3 41 54 111 124 79 136 0.66 CRISPR associated protein Cas2 RRM_1 PF00076.22 70 pNZ_AAFJ01000010_00106 - 140 0.0021 17.8 0.5 1 2 1.4e-06 0.0083 15.9 0.1 6 62 7 68 5 70 0.89 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_1 PF00076.22 70 pNZ_AAFJ01000010_00106 - 140 0.0021 17.8 0.5 2 2 0.22 1.3e+03 -0.7 0.0 4 18 104 118 104 132 0.80 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LPD11 PF18824.1 69 pNZ_AAFJ01000010_00106 - 140 0.086 12.9 1.8 1 3 0.34 2e+03 -1.1 0.0 28 50 10 32 2 33 0.77 Large polyvalent protein-associated domain 11 LPD11 PF18824.1 69 pNZ_AAFJ01000010_00106 - 140 0.086 12.9 1.8 2 3 0.84 5e+03 -2.3 0.0 61 67 57 63 48 74 0.54 Large polyvalent protein-associated domain 11 LPD11 PF18824.1 69 pNZ_AAFJ01000010_00106 - 140 0.086 12.9 1.8 3 3 2.9e-05 0.17 12.0 0.4 25 55 102 132 86 137 0.88 Large polyvalent protein-associated domain 11 AAA_31 PF13614.6 177 pNZ_AAFJ01000010_00107 - 219 1.6e-11 44.5 4.7 1 1 1.2e-13 1.8e-10 41.1 4.7 2 74 2 85 1 217 0.77 AAA domain MipZ PF09140.11 262 pNZ_AAFJ01000010_00107 - 219 3e-11 43.1 1.8 1 2 2.2e-09 3.3e-06 26.6 1.0 2 145 3 133 2 164 0.72 ATPase MipZ MipZ PF09140.11 262 pNZ_AAFJ01000010_00107 - 219 3e-11 43.1 1.8 2 2 0.0043 6.4 6.0 0.0 213 258 174 214 132 217 0.88 ATPase MipZ CbiA PF01656.23 128 pNZ_AAFJ01000010_00107 - 219 4.3e-09 36.5 0.1 1 1 4.3e-12 6.4e-09 35.9 0.1 5 110 8 171 4 190 0.70 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 305 pNZ_AAFJ01000010_00107 - 219 0.00013 21.3 0.3 1 2 5.4e-07 0.00081 18.7 0.0 8 46 9 47 1 75 0.87 Anion-transporting ATPase ArsA_ATPase PF02374.15 305 pNZ_AAFJ01000010_00107 - 219 0.00013 21.3 0.3 2 2 0.21 3.1e+02 0.3 0.5 139 181 117 159 109 217 0.58 Anion-transporting ATPase VirC1 PF07015.11 231 pNZ_AAFJ01000010_00107 - 219 0.0012 18.2 0.1 1 2 0.0012 1.7 7.9 0.0 1 40 1 40 1 58 0.86 VirC1 protein VirC1 PF07015.11 231 pNZ_AAFJ01000010_00107 - 219 0.0012 18.2 0.1 2 2 0.00061 0.91 8.8 0.0 87 152 83 149 67 213 0.76 VirC1 protein ABC2_membrane_3 PF12698.7 345 pNZ_AAFJ01000010_00107 - 219 0.0018 17.4 0.8 1 1 1.3e-06 0.002 17.3 0.8 21 128 19 138 13 211 0.62 ABC-2 family transporter protein AAA_24 PF13479.6 197 pNZ_AAFJ01000010_00107 - 219 0.0038 17.0 1.2 1 2 4.1e-06 0.0061 16.3 0.1 11 73 11 87 9 91 0.75 AAA domain AAA_24 PF13479.6 197 pNZ_AAFJ01000010_00107 - 219 0.0038 17.0 1.2 2 2 1.8 2.6e+03 -2.1 0.0 31 58 185 213 158 217 0.59 AAA domain ParA PF10609.9 246 pNZ_AAFJ01000010_00107 - 219 0.004 16.6 0.0 1 1 4.8e-06 0.0072 15.8 0.0 6 41 4 39 1 58 0.85 NUBPL iron-transfer P-loop NTPase ATP_bind_1 PF03029.17 241 pNZ_AAFJ01000010_00107 - 219 0.019 14.8 0.1 1 2 4.4e-05 0.066 13.0 0.0 6 34 12 40 10 50 0.91 Conserved hypothetical ATP binding protein ATP_bind_1 PF03029.17 241 pNZ_AAFJ01000010_00107 - 219 0.019 14.8 0.1 2 2 0.88 1.3e+03 -1.1 0.0 196 196 89 89 40 153 0.53 Conserved hypothetical ATP binding protein DUF2139 PF09910.9 340 pNZ_AAFJ01000010_00107 - 219 0.14 11.3 0.0 1 1 0.0003 0.45 9.6 0.0 170 251 51 128 2 138 0.82 Uncharacterized protein conserved in archaea (DUF2139) CBP_BcsQ PF06564.12 234 pNZ_AAFJ01000010_00107 - 219 0.14 11.6 0.0 1 2 0.00038 0.57 9.6 0.0 1 39 1 39 1 56 0.88 Cellulose biosynthesis protein BcsQ CBP_BcsQ PF06564.12 234 pNZ_AAFJ01000010_00107 - 219 0.14 11.6 0.0 2 2 0.52 7.8e+02 -0.6 0.0 154 176 129 152 98 179 0.69 Cellulose biosynthesis protein BcsQ AAA_14 PF13173.6 131 pNZ_AAFJ01000010_00107 - 219 0.25 11.4 7.9 1 3 3.3e-05 0.05 13.6 1.3 13 71 13 86 11 103 0.67 AAA domain AAA_14 PF13173.6 131 pNZ_AAFJ01000010_00107 - 219 0.25 11.4 7.9 2 3 1.1 1.7e+03 -1.0 0.1 54 69 128 143 92 172 0.54 AAA domain AAA_14 PF13173.6 131 pNZ_AAFJ01000010_00107 - 219 0.25 11.4 7.9 3 3 0.35 5.2e+02 0.6 0.1 20 58 171 213 167 218 0.65 AAA domain SNF2_N PF00176.23 350 pNZ_AAFJ01000010_00109 - 1969 3.6e-15 55.6 0.1 1 1 4.3e-18 1.1e-14 53.9 0.1 59 244 978 1229 962 1252 0.81 SNF2 family N-terminal domain Helicase_C PF00271.31 111 pNZ_AAFJ01000010_00109 - 1969 1.5e-09 38.2 7.1 1 4 2.1 5.5e+03 -2.3 0.2 7 68 533 593 528 600 0.68 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pNZ_AAFJ01000010_00109 - 1969 1.5e-09 38.2 7.1 2 4 0.19 4.8e+02 1.1 0.0 38 71 1029 1062 995 1065 0.73 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pNZ_AAFJ01000010_00109 - 1969 1.5e-09 38.2 7.1 3 4 1.1e-12 2.8e-09 37.3 0.0 21 110 1496 1593 1482 1594 0.80 Helicase conserved C-terminal domain Helicase_C PF00271.31 111 pNZ_AAFJ01000010_00109 - 1969 1.5e-09 38.2 7.1 4 4 2.9 7.3e+03 -2.7 0.2 44 68 1925 1947 1884 1954 0.61 Helicase conserved C-terminal domain ResIII PF04851.15 171 pNZ_AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 1 6 1.5 3.8e+03 -2.3 0.0 62 85 264 291 253 344 0.53 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pNZ_AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 2 6 5.5 1.4e+04 -4.1 0.3 79 119 526 569 493 586 0.60 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pNZ_AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 3 6 0.82 2.1e+03 -1.5 1.8 50 120 856 930 849 950 0.63 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pNZ_AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 4 6 1e-11 2.6e-08 34.1 3.3 3 169 959 1198 957 1200 0.70 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pNZ_AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 5 6 2 5e+03 -2.7 1.2 56 114 1686 1730 1620 1803 0.61 Type III restriction enzyme, res subunit ResIII PF04851.15 171 pNZ_AAFJ01000010_00109 - 1969 2.6e-08 34.1 3.3 6 6 2.8 7e+03 -3.2 1.0 64 74 1911 1921 1876 1964 0.46 Type III restriction enzyme, res subunit Eco57I PF07669.11 106 pNZ_AAFJ01000010_00109 - 1969 2.1e-06 28.2 1.2 1 3 1e-08 2.6e-05 24.7 0.1 2 72 281 348 280 383 0.65 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pNZ_AAFJ01000010_00109 - 1969 2.1e-06 28.2 1.2 2 3 7 1.8e+04 -4.1 0.0 30 44 761 775 758 777 0.86 Eco57I restriction-modification methylase Eco57I PF07669.11 106 pNZ_AAFJ01000010_00109 - 1969 2.1e-06 28.2 1.2 3 3 2.3 6e+03 -2.2 0.0 34 72 902 939 884 960 0.65 Eco57I restriction-modification methylase DEAD PF00270.29 176 pNZ_AAFJ01000010_00109 - 1969 0.00053 19.8 2.9 1 3 1.3 3.4e+03 -2.4 0.0 52 81 261 285 246 311 0.72 DEAD/DEAH box helicase DEAD PF00270.29 176 pNZ_AAFJ01000010_00109 - 1969 0.00053 19.8 2.9 2 3 2.3e-06 0.006 16.4 1.4 6 150 966 1167 961 1205 0.70 DEAD/DEAH box helicase DEAD PF00270.29 176 pNZ_AAFJ01000010_00109 - 1969 0.00053 19.8 2.9 3 3 3.5 9.1e+03 -3.8 0.0 80 110 1525 1560 1509 1573 0.59 DEAD/DEAH box helicase MTS PF05175.14 169 pNZ_AAFJ01000010_00109 - 1969 0.0033 17.0 0.0 1 1 5.8e-06 0.015 14.9 0.0 79 138 261 329 218 339 0.69 Methyltransferase small domain Methyltransf_23 PF13489.6 165 pNZ_AAFJ01000010_00109 - 1969 0.056 13.3 0.0 1 1 9.8e-05 0.25 11.2 0.0 22 89 221 288 194 345 0.86 Methyltransferase domain Fic PF02661.18 97 pNZ_AAFJ01000010_00112 - 156 0.025 15.5 0.0 1 2 1.2 1.1e+04 -2.6 0.0 44 58 11 27 6 46 0.60 Fic/DOC family Fic PF02661.18 97 pNZ_AAFJ01000010_00112 - 156 0.025 15.5 0.0 2 2 6.1e-06 0.055 14.4 0.0 2 31 58 90 57 124 0.76 Fic/DOC family Adenyl_cycl_N PF12633.7 199 pNZ_AAFJ01000010_00112 - 156 0.086 12.7 0.1 1 1 1.8e-05 0.16 11.8 0.1 105 143 9 47 2 55 0.92 Adenylate cyclase NT domain CRISPR_Cas2 PF09827.9 76 pNZ_AAFJ01000010_00114 - 151 1e-05 25.6 2.4 1 2 6.4e-09 1.6e-05 24.9 0.0 5 52 12 76 9 91 0.73 CRISPR associated protein Cas2 CRISPR_Cas2 PF09827.9 76 pNZ_AAFJ01000010_00114 - 151 1e-05 25.6 2.4 2 2 0.45 1.1e+03 -0.2 0.7 43 57 124 141 113 148 0.58 CRISPR associated protein Cas2 GIT_CC PF16559.5 66 pNZ_AAFJ01000010_00114 - 151 0.014 15.2 5.0 1 1 8.9e-06 0.023 14.6 5.0 10 59 90 139 84 148 0.92 GIT coiled-coil Rho guanine nucleotide exchange factor ABC_tran_Xtn PF12848.7 85 pNZ_AAFJ01000010_00114 - 151 0.014 15.4 2.7 1 1 9.3e-06 0.024 14.7 2.7 23 59 109 145 93 151 0.81 ABC transporter DUF5595 PF18077.1 73 pNZ_AAFJ01000010_00114 - 151 0.039 14.0 3.6 1 1 3.1e-05 0.08 13.0 3.6 26 72 100 145 95 146 0.90 Domain of unknown function (DUF5595) DUF1722 PF08349.11 117 pNZ_AAFJ01000010_00114 - 151 0.047 14.0 2.6 1 3 0.33 8.6e+02 0.2 0.0 40 71 19 50 16 66 0.70 Protein of unknown function (DUF1722) DUF1722 PF08349.11 117 pNZ_AAFJ01000010_00114 - 151 0.047 14.0 2.6 2 3 0.013 33 4.8 0.0 55 106 46 97 37 102 0.88 Protein of unknown function (DUF1722) DUF1722 PF08349.11 117 pNZ_AAFJ01000010_00114 - 151 0.047 14.0 2.6 3 3 0.0024 6.2 7.1 2.0 35 72 109 146 96 150 0.86 Protein of unknown function (DUF1722) NPBW PF15180.6 116 pNZ_AAFJ01000010_00114 - 151 0.22 11.4 0.6 1 1 0.00015 0.38 10.6 0.6 61 94 115 148 100 151 0.74 Neuropeptides B and W EMP24_GP25L PF01105.24 182 pNZ_AAFJ01000010_00114 - 151 0.6 10.0 5.3 1 2 0.061 1.6e+02 2.1 0.1 87 156 7 77 1 79 0.62 emp24/gp25L/p24 family/GOLD EMP24_GP25L PF01105.24 182 pNZ_AAFJ01000010_00114 - 151 0.6 10.0 5.3 2 2 0.00038 0.97 9.3 1.9 78 129 82 142 81 150 0.68 emp24/gp25L/p24 family/GOLD DUF2600 PF10776.9 328 pNZ_AAFJ01000010_00115 - 151 0.0034 16.3 0.5 1 1 4.2e-06 0.0044 15.9 0.5 193 244 62 112 33 126 0.87 Protein of unknown function (DUF2600) DUF2070 PF09843.9 564 pNZ_AAFJ01000010_00115 - 151 0.0043 15.4 8.7 1 1 4.6e-06 0.0049 15.2 8.7 67 171 8 141 1 147 0.74 Predicted membrane protein (DUF2070) COX7a PF02238.15 53 pNZ_AAFJ01000010_00115 - 151 0.0096 16.3 1.7 1 2 0.00072 0.76 10.2 0.1 14 49 3 38 2 41 0.87 Cytochrome c oxidase subunit VII COX7a PF02238.15 53 pNZ_AAFJ01000010_00115 - 151 0.0096 16.3 1.7 2 2 0.04 42 4.6 0.1 27 47 117 137 113 141 0.89 Cytochrome c oxidase subunit VII HlyIII PF03006.20 224 pNZ_AAFJ01000010_00115 - 151 0.013 15.3 7.6 1 1 1.4e-05 0.015 15.1 7.6 39 162 13 143 2 151 0.70 Haemolysin-III related DUF1129 PF06570.11 206 pNZ_AAFJ01000010_00115 - 151 0.022 14.3 8.0 1 2 0.044 46 3.4 0.1 142 182 4 45 1 52 0.70 Protein of unknown function (DUF1129) DUF1129 PF06570.11 206 pNZ_AAFJ01000010_00115 - 151 0.022 14.3 8.0 2 2 2.6e-05 0.027 13.9 3.5 87 172 55 139 42 148 0.77 Protein of unknown function (DUF1129) DUF1772 PF08592.11 137 pNZ_AAFJ01000010_00115 - 151 0.027 14.8 3.3 1 1 3.1e-05 0.033 14.5 2.3 26 80 7 69 2 116 0.80 Domain of unknown function (DUF1772) DUF2663 PF10864.8 127 pNZ_AAFJ01000010_00115 - 151 0.076 13.4 14.4 1 2 0.00051 0.53 10.7 5.7 9 80 6 78 1 81 0.70 Protein of unknown function (DUF2663) DUF2663 PF10864.8 127 pNZ_AAFJ01000010_00115 - 151 0.076 13.4 14.4 2 2 0.0028 3 8.3 1.5 26 78 89 146 80 149 0.54 Protein of unknown function (DUF2663) DUF898 PF05987.13 342 pNZ_AAFJ01000010_00115 - 151 0.079 12.0 6.5 1 2 0.00054 0.57 9.2 2.6 174 241 2 69 1 80 0.76 Bacterial protein of unknown function (DUF898) DUF898 PF05987.13 342 pNZ_AAFJ01000010_00115 - 151 0.079 12.0 6.5 2 2 0.0096 10 5.1 0.1 196 244 90 138 77 148 0.57 Bacterial protein of unknown function (DUF898) DUF418 PF04235.12 163 pNZ_AAFJ01000010_00115 - 151 0.12 12.3 2.2 1 2 0.00023 0.24 11.3 0.7 14 89 10 85 4 87 0.80 Protein of unknown function (DUF418) DUF418 PF04235.12 163 pNZ_AAFJ01000010_00115 - 151 0.12 12.3 2.2 2 2 0.016 16 5.4 0.0 6 74 69 137 69 147 0.85 Protein of unknown function (DUF418) Zip PF02535.22 333 pNZ_AAFJ01000010_00115 - 151 0.18 11.0 6.0 1 1 0.0011 1.2 8.3 6.0 25 98 5 78 1 149 0.88 ZIP Zinc transporter Nodulin-like PF06813.13 250 pNZ_AAFJ01000010_00115 - 151 0.21 11.0 7.9 1 2 0.0051 5.4 6.4 5.0 149 243 3 96 1 97 0.80 Nodulin-like Nodulin-like PF06813.13 250 pNZ_AAFJ01000010_00115 - 151 0.21 11.0 7.9 2 2 7.3e-05 0.077 12.5 3.6 138 222 54 144 52 150 0.58 Nodulin-like DUF4293 PF14126.6 154 pNZ_AAFJ01000010_00115 - 151 0.24 11.7 12.1 1 1 0.0005 0.53 10.5 12.1 6 134 15 134 13 147 0.60 Domain of unknown function (DUF4293) FixH PF05751.11 150 pNZ_AAFJ01000010_00115 - 151 0.38 10.8 4.2 1 3 0.00039 0.41 10.6 0.3 1 33 6 38 6 48 0.90 FixH FixH PF05751.11 150 pNZ_AAFJ01000010_00115 - 151 0.38 10.8 4.2 2 3 0.77 8.1e+02 -0.1 0.0 18 33 88 103 81 109 0.82 FixH FixH PF05751.11 150 pNZ_AAFJ01000010_00115 - 151 0.38 10.8 4.2 3 3 1.7 1.8e+03 -1.1 0.2 11 25 124 138 121 148 0.54 FixH DUF1673 PF07895.11 230 pNZ_AAFJ01000010_00115 - 151 1.8 8.3 17.6 1 2 5.9e-05 0.062 13.0 8.4 152 227 17 93 4 96 0.65 Protein of unknown function (DUF1673) DUF1673 PF07895.11 230 pNZ_AAFJ01000010_00115 - 151 1.8 8.3 17.6 2 2 0.15 1.5e+02 1.9 2.9 156 212 92 147 88 150 0.48 Protein of unknown function (DUF1673) GPI2 PF06432.11 280 pNZ_AAFJ01000010_00115 - 151 2.4 7.6 9.8 1 2 0.67 7.1e+02 -0.6 0.7 193 211 18 36 11 39 0.75 Phosphatidylinositol N-acetylglucosaminyltransferase GPI2 PF06432.11 280 pNZ_AAFJ01000010_00115 - 151 2.4 7.6 9.8 2 2 0.00011 0.11 11.9 3.3 27 117 38 126 32 139 0.76 Phosphatidylinositol N-acetylglucosaminyltransferase DUF4131 PF13567.6 167 pNZ_AAFJ01000010_00115 - 151 3.4 7.3 5.3 1 2 0.00081 0.85 9.3 1.2 14 56 23 79 12 113 0.72 Domain of unknown function (DUF4131) DUF4131 PF13567.6 167 pNZ_AAFJ01000010_00115 - 151 3.4 7.3 5.3 2 2 1.3 1.3e+03 -1.1 0.1 3 19 120 136 118 148 0.62 Domain of unknown function (DUF4131) Tmpp129 PF10272.9 355 pNZ_AAFJ01000010_00115 - 151 8.7 5.5 9.3 1 2 0.0024 2.5 7.3 5.1 30 103 6 78 1 90 0.77 Putative transmembrane protein precursor Tmpp129 PF10272.9 355 pNZ_AAFJ01000010_00115 - 151 8.7 5.5 9.3 2 2 0.14 1.5e+02 1.5 0.5 46 92 90 138 69 150 0.36 Putative transmembrane protein precursor Relaxase PF03432.14 242 pNZ_AAFJ01000010_00116 - 554 2e-07 30.9 0.8 1 3 0.14 1.2e+03 -1.2 0.6 125 176 57 91 40 128 0.47 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pNZ_AAFJ01000010_00116 - 554 2e-07 30.9 0.8 2 3 2.2e-11 2e-07 30.9 0.8 33 157 142 261 128 286 0.80 Relaxase/Mobilisation nuclease domain Relaxase PF03432.14 242 pNZ_AAFJ01000010_00116 - 554 2e-07 30.9 0.8 3 3 0.043 3.9e+02 0.5 0.9 131 164 415 461 357 481 0.72 Relaxase/Mobilisation nuclease domain Tektin PF03148.14 383 pNZ_AAFJ01000010_00116 - 554 0.19 10.5 6.0 1 2 1.4e-05 0.13 11.0 0.3 38 89 214 265 206 273 0.93 Tektin family Tektin PF03148.14 383 pNZ_AAFJ01000010_00116 - 554 0.19 10.5 6.0 2 2 0.014 1.2e+02 1.2 1.1 171 224 412 466 391 471 0.65 Tektin family RHH_7 PF16777.5 74 pNZ_AAFJ01000010_00117 - 185 0.085 13.3 6.7 1 2 0.02 1.2e+02 3.2 0.1 36 59 5 28 2 40 0.86 Transcriptional regulator, RHH-like, CopG RHH_7 PF16777.5 74 pNZ_AAFJ01000010_00117 - 185 0.085 13.3 6.7 2 2 5.4e-05 0.32 11.4 2.9 24 65 58 100 38 107 0.85 Transcriptional regulator, RHH-like, CopG TMEM95 PF15203.6 151 pNZ_AAFJ01000010_00117 - 185 0.58 9.8 2.7 1 2 7.6e-05 0.45 10.1 0.5 26 81 44 105 18 112 0.71 TMEM95 family TMEM95 PF15203.6 151 pNZ_AAFJ01000010_00117 - 185 0.58 9.8 2.7 2 2 0.21 1.2e+03 -1.0 0.1 9 42 130 163 125 174 0.71 TMEM95 family pRN1_helical PF13010.6 136 pNZ_AAFJ01000010_00117 - 185 4.1 7.4 9.5 1 2 0.00039 2.3 8.2 6.5 4 62 8 73 5 84 0.80 Primase helical domain pRN1_helical PF13010.6 136 pNZ_AAFJ01000010_00117 - 185 4.1 7.4 9.5 2 2 0.16 9.3e+02 -0.3 0.1 38 64 115 141 73 161 0.56 Primase helical domain EssA PF10661.9 148 pNZ_AAFJ01000010_00118 - 80 0.2 11.5 8.8 1 1 9.8e-06 0.18 11.7 7.9 39 76 4 41 2 58 0.83 WXG100 protein secretion system (Wss), protein EssA ANAPC4 PF12896.7 204 pNZ_AAFJ01000010_00119 - 101 0.11 11.9 0.1 1 1 8e-06 0.14 11.6 0.1 45 88 28 70 23 81 0.92 Anaphase-promoting complex, cyclosome, subunit 4 Fic PF02661.18 97 pNZ_AAFJ01000017_00001 - 244 1.7e-17 64.0 0.1 1 2 5.1e-21 4.6e-17 62.7 0.0 2 96 80 180 79 181 0.94 Fic/DOC family Fic PF02661.18 97 pNZ_AAFJ01000017_00001 - 244 1.7e-17 64.0 0.1 2 2 0.79 7.1e+03 -2.0 0.0 38 57 201 220 191 232 0.58 Fic/DOC family DUF1495 PF07381.11 90 pNZ_AAFJ01000017_00001 - 244 0.13 12.2 0.0 1 2 0.00013 1.1 9.1 0.0 29 64 11 46 6 57 0.89 Winged helix DNA-binding domain (DUF1495) DUF1495 PF07381.11 90 pNZ_AAFJ01000017_00001 - 244 0.13 12.2 0.0 2 2 0.078 7e+02 0.1 0.0 5 28 190 212 187 222 0.74 Winged helix DNA-binding domain (DUF1495) Toprim_3 PF13362.6 95 pNZ_AAFJ01000017_00002 - 376 5.2e-09 36.3 0.0 1 1 9.2e-13 8.2e-09 35.7 0.0 3 94 264 365 262 366 0.83 Toprim domain Toprim_4 PF13662.6 89 pNZ_AAFJ01000017_00002 - 376 0.017 15.6 0.1 1 1 3.9e-06 0.035 14.6 0.1 2 80 262 336 261 341 0.89 Toprim domain SSB PF00436.25 104 pNZ_AAFJ01000017_00005 - 142 1.4e-29 102.2 0.8 1 1 2.3e-33 2.1e-29 101.6 0.8 1 104 2 104 2 104 0.97 Single-strand binding protein family tRNA_anti-codon PF01336.25 76 pNZ_AAFJ01000017_00005 - 142 0.00012 22.0 0.1 1 1 1.9e-08 0.00017 21.5 0.1 12 74 32 102 12 104 0.84 OB-fold nucleic acid binding domain DD_K PF12121.8 23 pNZ_AAFJ01000017_00006 - 48 6 7.1 6.5 1 2 0.03 5.3e+02 0.9 0.1 6 11 4 9 1 11 0.77 Dermaseptin DD_K PF12121.8 23 pNZ_AAFJ01000017_00006 - 48 6 7.1 6.5 2 2 0.00015 2.6 8.2 2.2 2 9 40 47 40 48 0.89 Dermaseptin DUF1640 PF07798.11 175 pNZ_AAFJ01000017_00008 - 112 0.0011 19.0 0.7 1 1 1.6e-07 0.0014 18.7 0.7 99 174 20 111 15 112 0.72 Protein of unknown function (DUF1640) Merozoite_SPAM PF07133.11 182 pNZ_AAFJ01000017_00008 - 112 0.0095 16.0 4.1 1 1 1.3e-06 0.012 15.6 4.1 25 81 28 85 22 90 0.90 Merozoite surface protein (SPAM) RecT PF03837.14 199 pNZ_AAFJ01000017_00009 - 268 2.3e-36 125.2 0.1 1 1 2.2e-40 4e-36 124.4 0.0 3 194 13 194 11 199 0.92 RecT family GGA_N-GAT PF18308.1 39 pNZ_AAFJ01000017_00010 - 195 0.19 11.4 2.8 1 2 8e-06 0.14 11.8 0.7 22 38 8 24 5 25 0.87 GGA N-GAT domain GGA_N-GAT PF18308.1 39 pNZ_AAFJ01000017_00010 - 195 0.19 11.4 2.8 2 2 0.43 7.7e+03 -3.4 0.1 22 27 111 116 111 117 0.80 GGA N-GAT domain DUF2624 PF11116.8 83 pNZ_AAFJ01000017_00015 - 135 0.041 14.8 0.1 1 1 9.3e-06 0.084 13.8 0.1 19 63 53 97 49 102 0.87 Protein of unknown function (DUF2624) DUF4883 PF16224.5 119 pNZ_AAFJ01000017_00015 - 135 0.075 13.3 2.6 1 1 1e-05 0.094 13.0 2.6 22 114 2 95 1 98 0.90 DOmain of unknown function (DUF4883) DUF2031 PF09592.10 227 pNZ_AAFJ01000017_00019 - 64 0.013 15.0 5.3 1 1 1.4e-06 0.013 15.1 5.3 109 165 2 58 1 64 0.89 Protein of unknown function (DUF2031) RNA_pol_Rpb2_45 PF10385.9 65 pNZ_AAFJ01000017_00019 - 64 0.1 12.9 0.4 1 1 1.4e-05 0.13 12.6 0.4 19 58 11 52 3 58 0.73 RNA polymerase beta subunit external 1 domain DUF4830 PF16112.5 84 pNZ_AAFJ01000017_00020 - 97 0.0075 16.7 0.1 1 1 1.1e-06 0.0094 16.4 0.1 21 72 11 75 4 89 0.74 Domain of unknown function (DUF4830) ParE_toxin PF05016.15 90 pNZ_AAFJ01000017_00020 - 97 0.07 13.7 0.0 1 1 1e-05 0.094 13.3 0.0 7 88 4 82 1 83 0.74 ParE toxin of type II toxin-antitoxin system, parDE PDDEXK_1 PF12705.7 255 pNZ_AAFJ01000017_00022 - 317 1.5e-05 25.0 0.0 1 2 6.2e-09 2.8e-05 24.2 0.0 125 255 94 213 33 213 0.69 PD-(D/E)XK nuclease superfamily PDDEXK_1 PF12705.7 255 pNZ_AAFJ01000017_00022 - 317 1.5e-05 25.0 0.0 2 2 1.3 5.8e+03 -3.1 0.0 94 107 251 265 227 303 0.57 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 162 pNZ_AAFJ01000017_00022 - 317 4.4e-05 23.6 1.4 1 2 1.1e-08 4.9e-05 23.5 0.1 54 160 98 212 74 214 0.82 Domain of unknown function DUF83 Cas_Cas4 PF01930.17 162 pNZ_AAFJ01000017_00022 - 317 4.4e-05 23.6 1.4 2 2 0.89 4e+03 -2.2 0.1 122 139 239 256 229 271 0.51 Domain of unknown function DUF83 MapZ_C2 PF18708.1 92 pNZ_AAFJ01000017_00022 - 317 0.021 15.1 0.1 1 2 1.8e-05 0.081 13.2 0.0 58 90 131 164 115 165 0.80 MapZ extracellular C-terminal domain 2 MapZ_C2 PF18708.1 92 pNZ_AAFJ01000017_00022 - 317 0.021 15.1 0.1 2 2 2.7 1.2e+04 -3.4 0.0 30 38 306 314 292 315 0.66 MapZ extracellular C-terminal domain 2 NERD PF08378.11 108 pNZ_AAFJ01000017_00022 - 317 0.072 13.6 0.1 1 1 3.7e-05 0.17 12.4 0.1 8 70 72 134 65 193 0.69 Nuclease-related domain G-gamma PF00631.22 68 pNZ_AAFJ01000017_00023 - 200 0.045 13.8 0.6 1 1 1.2e-05 0.11 12.5 0.6 4 32 8 38 6 46 0.86 GGL domain UPF0449 PF15136.6 101 pNZ_AAFJ01000017_00023 - 200 0.15 12.6 1.7 1 2 0.002 18 5.9 0.5 69 92 10 33 2 38 0.81 Uncharacterised protein family UPF0449 UPF0449 PF15136.6 101 pNZ_AAFJ01000017_00023 - 200 0.15 12.6 1.7 2 2 0.0021 19 5.8 0.0 54 94 87 129 67 136 0.79 Uncharacterised protein family UPF0449 YycI PF09648.10 230 pNZ_AAFJ01000017_00024 - 74 0.011 15.3 0.6 1 1 1.9e-06 0.011 15.3 0.6 149 195 17 61 2 72 0.82 YycH protein Mad3_BUB1_I PF08311.12 124 pNZ_AAFJ01000017_00024 - 74 0.023 14.7 1.0 1 1 4.5e-06 0.027 14.5 1.0 6 75 2 64 1 71 0.91 Mad3/BUB1 homology region 1 Rsbr_N PF08678.10 130 pNZ_AAFJ01000017_00024 - 74 0.049 13.7 0.1 1 2 0.0072 43 4.2 0.1 97 126 5 34 1 37 0.81 Rsbr N terminal Rsbr_N PF08678.10 130 pNZ_AAFJ01000017_00024 - 74 0.049 13.7 0.1 2 2 0.0002 1.2 9.2 0.0 51 83 38 70 23 73 0.79 Rsbr N terminal DUF4450 PF14614.6 217 pNZ_AAFL01000016_00001 - 139 0.0036 16.9 0.7 1 2 0.5 3e+03 -2.4 0.0 182 194 34 45 16 58 0.48 Domain of unknown function (DUF4450) DUF4450 PF14614.6 217 pNZ_AAFL01000016_00001 - 139 0.0036 16.9 0.7 2 2 9.4e-07 0.0056 16.3 0.1 6 48 74 116 71 125 0.94 Domain of unknown function (DUF4450) VanW PF04294.13 130 pNZ_AAFL01000016_00001 - 139 0.013 15.2 0.3 1 2 0.22 1.3e+03 -1.0 0.0 93 117 20 45 10 56 0.66 VanW like protein VanW PF04294.13 130 pNZ_AAFL01000016_00001 - 139 0.013 15.2 0.3 2 2 7.5e-06 0.045 13.4 0.1 26 66 88 129 77 134 0.87 VanW like protein SBDS PF01172.18 88 pNZ_AAFL01000016_00001 - 139 0.089 12.9 4.1 1 2 0.15 9.2e+02 0.0 0.1 66 76 25 35 13 38 0.82 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS PF01172.18 88 pNZ_AAFL01000016_00001 - 139 0.089 12.9 4.1 2 2 2.8e-05 0.17 12.0 2.2 9 31 37 59 32 119 0.73 Shwachman-Bodian-Diamond syndrome (SBDS) protein Phage_lysozyme PF00959.19 109 pNZ_AAFL01000016_00002 - 644 1.2e-10 41.7 1.2 1 2 0.99 8.9e+03 -2.8 0.1 17 37 323 343 307 360 0.73 Phage lysozyme Phage_lysozyme PF00959.19 109 pNZ_AAFL01000016_00002 - 644 1.2e-10 41.7 1.2 2 2 2.2e-14 2e-10 41.1 0.1 3 108 521 630 519 631 0.86 Phage lysozyme Vta1 PF04652.16 145 pNZ_AAFL01000016_00002 - 644 2.6 8.0 10.4 1 4 0.47 4.2e+03 -2.4 0.1 116 137 148 170 140 173 0.78 Vta1 like Vta1 PF04652.16 145 pNZ_AAFL01000016_00002 - 644 2.6 8.0 10.4 2 4 0.16 1.4e+03 -0.9 0.2 29 60 317 356 312 369 0.69 Vta1 like Vta1 PF04652.16 145 pNZ_AAFL01000016_00002 - 644 2.6 8.0 10.4 3 4 6.3e-06 0.056 13.4 0.9 8 79 392 467 384 471 0.79 Vta1 like Vta1 PF04652.16 145 pNZ_AAFL01000016_00002 - 644 2.6 8.0 10.4 4 4 0.19 1.7e+03 -1.2 0.0 21 58 464 501 463 515 0.80 Vta1 like SseC PF04888.12 317 pNZ_AAFL01000016_00004 - 1310 0.0049 16.5 0.2 1 1 3e-06 0.014 15.1 0.2 31 109 204 273 198 277 0.83 Secretion system effector C (SseC) like family ThrE PF06738.12 241 pNZ_AAFL01000016_00004 - 1310 0.014 14.8 0.8 1 1 7.8e-06 0.035 13.5 0.8 90 179 209 300 201 312 0.78 Putative threonine/serine exporter Hormone_2 PF00123.20 28 pNZ_AAFL01000016_00004 - 1310 0.036 14.0 0.1 1 1 3.5e-05 0.16 11.9 0.1 8 24 811 827 810 828 0.95 Peptide hormone APOBEC_C PF05240.14 78 pNZ_AAFL01000016_00004 - 1310 0.061 13.3 0.4 1 1 6.9e-05 0.31 11.0 0.4 26 76 766 819 755 821 0.85 APOBEC-like C-terminal domain UvrA_DNA-bind PF17755.1 110 pNZ_AAFL01000016_00005 - 422 0.012 15.9 0.3 1 2 0.00028 5.1 7.5 0.1 24 61 32 69 19 84 0.84 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pNZ_AAFL01000016_00005 - 422 0.012 15.9 0.3 2 2 0.00086 15 5.9 0.0 15 33 92 109 88 126 0.76 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pNZ_AAFL01000016_00007 - 426 0.0051 17.1 0.3 1 3 0.00018 3.2 8.1 0.0 24 65 36 77 30 90 0.84 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pNZ_AAFL01000016_00007 - 426 0.0051 17.1 0.3 2 3 0.00088 16 5.9 0.0 15 33 96 113 92 129 0.75 UvrA DNA-binding domain UvrA_DNA-bind PF17755.1 110 pNZ_AAFL01000016_00007 - 426 0.0051 17.1 0.3 3 3 0.29 5.3e+03 -2.2 0.0 77 97 316 336 306 338 0.82 UvrA DNA-binding domain Glyco_tranf_2_5 PF13712.6 210 pNZ_AAFL01000016_00008 - 267 0.00068 19.4 3.8 1 1 7.1e-08 0.0013 18.5 3.8 4 77 114 190 111 198 0.85 Glycosyltransferase like family TraG_N PF07916.11 467 pNZ_AAFL01000016_00009 - 900 3e-39 135.2 20.8 1 3 1.7e-43 3e-39 135.2 20.8 38 465 23 446 1 452 0.78 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pNZ_AAFL01000016_00009 - 900 3e-39 135.2 20.8 2 3 0.1 1.8e+03 -2.6 0.9 267 318 538 590 504 600 0.52 TraG-like protein, N-terminal region TraG_N PF07916.11 467 pNZ_AAFL01000016_00009 - 900 3e-39 135.2 20.8 3 3 1 1.8e+04 -14.0 16.2 228 265 808 845 652 899 0.59 TraG-like protein, N-terminal region DUF4131 PF13567.6 167 pNZ_AAFL01000016_00010 - 106 0.0008 19.1 0.1 1 1 2.8e-07 0.001 18.8 0.1 3 83 19 97 17 100 0.70 Domain of unknown function (DUF4131) DUF981 PF06168.11 187 pNZ_AAFL01000016_00010 - 106 0.015 15.2 3.3 1 1 5.2e-06 0.019 14.9 3.3 119 175 9 66 4 73 0.87 Protein of unknown function (DUF981) Wzy_C PF04932.15 155 pNZ_AAFL01000016_00010 - 106 0.056 13.1 1.3 1 1 1.8e-05 0.064 12.9 1.3 19 65 24 71 19 96 0.81 O-Antigen ligase DUF2663 PF10864.8 127 pNZ_AAFL01000016_00010 - 106 0.13 12.7 2.1 1 1 4.5e-05 0.16 12.4 2.1 8 80 9 81 2 86 0.58 Protein of unknown function (DUF2663) DUF2721 PF11026.8 129 pNZ_AAFL01000016_00010 - 106 0.27 11.1 5.3 1 1 9.5e-05 0.34 10.8 5.3 59 118 12 66 3 69 0.85 Protein of unknown function (DUF2721) YafQ_toxin PF15738.5 88 pNZ_AAFL01000016_00011 - 91 8.9e-29 99.7 1.1 1 1 5.4e-33 9.7e-29 99.5 1.1 2 88 3 89 2 89 0.98 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 90 pNZ_AAFL01000016_00013 - 93 1.1e-07 32.4 0.1 1 1 6.6e-12 1.2e-07 32.3 0.1 4 82 6 85 3 89 0.87 ParE toxin of type II toxin-antitoxin system, parDE HicB_lk_antitox PF15919.5 123 pNZ_AAFL01000016_00015 - 119 8.3e-09 35.6 0.3 1 2 4.2e-06 0.038 14.1 0.0 1 60 12 74 12 79 0.82 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 123 pNZ_AAFL01000016_00015 - 119 8.3e-09 35.6 0.3 2 2 3.9e-08 0.00035 20.7 0.1 88 123 77 108 72 108 0.86 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 43 pNZ_AAFL01000016_00015 - 119 0.15 11.9 0.0 1 1 3.3e-05 0.29 11.0 0.0 3 35 80 112 79 115 0.80 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HicA_toxin PF07927.12 58 pNZ_AAFL01000016_00016 - 86 1.8e-06 27.9 0.0 1 1 2.1e-10 3.8e-06 26.9 0.0 5 55 35 82 31 83 0.88 HicA toxin of bacterial toxin-antitoxin, DUF5309 PF17236.2 280 pNZ_AAFL01000016_00017 - 81 3e-05 23.5 0.5 1 1 1.8e-09 3.3e-05 23.4 0.5 4 53 24 74 21 81 0.82 Family of unknown function (DUF5309) SGT1 PF07093.11 583 pNZ_AAFL01000016_00019 - 50 0.046 12.2 2.7 1 1 7.5e-06 0.045 12.2 2.7 511 553 7 49 1 50 0.79 SGT1 protein PG_binding_4 PF12229.8 114 pNZ_AAFL01000016_00019 - 50 0.057 13.7 1.0 1 1 1.1e-05 0.065 13.5 1.0 42 79 10 48 2 50 0.81 Putative peptidoglycan binding domain DUF2175 PF09943.9 98 pNZ_AAFL01000016_00019 - 50 0.077 13.3 1.2 1 1 1.4e-05 0.082 13.2 1.2 60 89 9 38 2 47 0.83 Uncharacterized protein conserved in archaea (DUF2175) DUF4795 PF16043.5 204 pNZ_AAFL01000016_00020 - 201 0.026 14.1 0.1 1 1 2.4e-06 0.043 13.4 0.1 60 124 45 109 31 174 0.86 Domain of unknown function (DUF4795) DUF3825 PF12873.7 239 pNZ_AAFL01000016_00021 - 335 1.9e-28 99.6 0.3 1 1 1.7e-32 3e-28 98.9 0.3 2 239 107 330 106 330 0.85 Domain of unknown function (DUF3825) GAGBD PF16828.5 152 pNZ_AAFL01000016_00022 - 80 0.011 15.8 1.4 1 1 6.7e-07 0.012 15.7 1.4 2 69 9 76 8 80 0.90 GAG-binding domain on surface antigen IMS_C PF11799.8 118 pNZ_AAFL01000016_00025 - 236 1.1e-12 48.7 0.0 1 1 2.1e-16 1.9e-12 48.0 0.0 8 111 94 221 90 226 0.91 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 32 pNZ_AAFL01000016_00025 - 236 0.0002 21.5 0.0 1 2 7.5e-08 0.00067 19.8 0.1 6 32 19 46 16 46 0.92 IMS family HHH motif IMS_HHH PF11798.8 32 pNZ_AAFL01000016_00025 - 236 0.0002 21.5 0.0 2 2 1.6 1.4e+04 -3.2 0.0 17 28 79 90 79 92 0.79 IMS family HHH motif AAA_25 PF13481.6 194 pNZ_AAFL01000016_00026 - 623 4.9e-30 104.5 0.0 1 1 8.5e-33 8.9e-30 103.7 0.0 11 193 306 475 297 476 0.87 AAA domain Toprim_2 PF13155.6 90 pNZ_AAFL01000016_00026 - 623 6.6e-18 64.9 0.0 1 2 2.4e-20 2.5e-17 63.1 0.0 1 90 189 278 189 278 0.91 Toprim-like Toprim_2 PF13155.6 90 pNZ_AAFL01000016_00026 - 623 6.6e-18 64.9 0.0 2 2 4.5 4.7e+03 -1.9 0.1 44 77 393 427 381 441 0.75 Toprim-like DUF3991 PF13154.6 76 pNZ_AAFL01000016_00026 - 623 3.3e-14 53.0 0.0 1 2 1.6e-16 1.7e-13 50.7 0.0 1 74 112 183 112 185 0.93 Protein of unknown function (DUF3991) DUF3991 PF13154.6 76 pNZ_AAFL01000016_00026 - 623 3.3e-14 53.0 0.0 2 2 2.8 3e+03 -1.3 0.0 6 19 589 602 587 620 0.71 Protein of unknown function (DUF3991) DnaB_C PF03796.15 255 pNZ_AAFL01000016_00026 - 623 8.6e-09 35.1 0.0 1 2 0.00037 0.39 10.0 0.0 19 45 329 355 326 366 0.87 DnaB-like helicase C terminal domain DnaB_C PF03796.15 255 pNZ_AAFL01000016_00026 - 623 8.6e-09 35.1 0.0 2 2 4.7e-08 4.9e-05 22.8 0.0 90 185 385 478 369 490 0.79 DnaB-like helicase C terminal domain Toprim_3 PF13362.6 95 pNZ_AAFL01000016_00026 - 623 1.8e-08 34.6 0.2 1 2 4.2e-10 4.4e-07 30.2 0.0 2 92 188 281 187 283 0.86 Toprim domain Toprim_3 PF13362.6 95 pNZ_AAFL01000016_00026 - 623 1.8e-08 34.6 0.2 2 2 0.46 4.8e+02 1.2 0.6 40 85 393 439 381 446 0.77 Toprim domain ATPase PF06745.13 231 pNZ_AAFL01000016_00026 - 623 7.2e-06 25.5 0.1 1 1 1.9e-07 0.0002 20.8 0.0 16 171 326 478 324 511 0.73 KaiC AAA_22 PF13401.6 137 pNZ_AAFL01000016_00026 - 623 0.0002 21.6 0.0 1 1 5.5e-07 0.00058 20.2 0.0 6 130 330 470 329 475 0.76 AAA domain NACHT PF05729.12 166 pNZ_AAFL01000016_00026 - 623 0.0033 17.4 0.0 1 2 1.1 1.1e+03 -0.7 0.0 43 71 6 33 3 43 0.76 NACHT domain NACHT PF05729.12 166 pNZ_AAFL01000016_00026 - 623 0.0033 17.4 0.0 2 2 2.5e-05 0.027 14.4 0.0 2 28 331 357 330 429 0.89 NACHT domain Toprim_4 PF13662.6 89 pNZ_AAFL01000016_00026 - 623 0.0078 16.7 0.0 1 1 2.5e-05 0.026 15.0 0.0 47 88 227 267 212 268 0.81 Toprim domain AAA_5 PF07728.14 138 pNZ_AAFL01000016_00026 - 623 0.018 15.0 0.0 1 1 6e-05 0.063 13.3 0.0 3 26 333 357 332 406 0.82 AAA domain (dynein-related subfamily) Rad51 PF08423.11 255 pNZ_AAFL01000016_00026 - 623 0.05 12.8 0.0 1 1 0.00051 0.54 9.5 0.0 34 190 326 475 324 494 0.69 Rad51 Toprim PF01751.22 103 pNZ_AAFL01000016_00026 - 623 0.051 13.8 0.0 1 1 0.00011 0.12 12.7 0.0 51 87 222 258 204 269 0.85 Toprim domain AAA_11 PF13086.6 261 pNZ_AAFL01000016_00026 - 623 0.065 13.0 0.0 1 2 0.24 2.6e+02 1.2 0.0 50 97 230 271 208 294 0.80 AAA domain AAA_11 PF13086.6 261 pNZ_AAFL01000016_00026 - 623 0.065 13.0 0.0 2 2 0.00095 1 9.1 0.0 18 43 330 355 320 400 0.76 AAA domain RNA_helicase PF00910.22 107 pNZ_AAFL01000016_00026 - 623 0.13 12.7 0.0 1 2 2.6 2.8e+03 -1.3 0.0 3 15 79 91 78 95 0.86 RNA helicase RNA_helicase PF00910.22 107 pNZ_AAFL01000016_00026 - 623 0.13 12.7 0.0 2 2 0.00069 0.73 10.2 0.0 2 26 333 357 332 378 0.83 RNA helicase PhoH PF02562.16 205 pNZ_AAFL01000016_00026 - 623 0.17 11.3 0.0 1 1 0.00034 0.36 10.3 0.0 20 47 330 357 322 362 0.88 PhoH-like protein zf-CHC2 PF01807.20 98 pNZ_AAFL01000016_00026 - 623 0.18 11.7 0.0 1 1 0.00035 0.37 10.6 0.0 44 88 40 82 8 90 0.84 CHC2 zinc finger DUF2075 PF09848.9 363 pNZ_AAFL01000016_00026 - 623 0.2 10.8 0.0 1 1 0.00031 0.33 10.2 0.0 2 26 330 354 329 398 0.89 Uncharacterized conserved protein (DUF2075) MobA_MobL PF03389.15 222 pNZ_AAFL01000016_00027 - 498 3.7e-79 265.5 0.0 1 2 7.3e-82 1.4e-78 263.6 0.0 1 222 17 246 17 246 0.99 MobA/MobL family MobA_MobL PF03389.15 222 pNZ_AAFL01000016_00027 - 498 3.7e-79 265.5 0.0 2 2 0.85 1.7e+03 -1.5 0.1 7 188 309 339 297 367 0.59 MobA/MobL family Spectrin PF00435.21 105 pNZ_AAFL01000016_00027 - 498 0.015 15.8 2.4 1 2 9e-05 0.18 12.3 0.2 6 102 269 365 264 368 0.75 Spectrin repeat Spectrin PF00435.21 105 pNZ_AAFL01000016_00027 - 498 0.015 15.8 2.4 2 2 0.14 2.7e+02 2.1 0.1 33 90 406 463 396 464 0.78 Spectrin repeat Prominin PF05478.11 800 pNZ_AAFL01000016_00027 - 498 0.02 12.9 1.9 1 1 1.4e-05 0.029 12.4 1.9 542 695 321 479 298 487 0.84 Prominin Snapin_Pallidin PF14712.6 90 pNZ_AAFL01000016_00027 - 498 0.021 15.2 2.0 1 2 3e-05 0.059 13.8 0.3 14 69 337 393 335 395 0.95 Snapin/Pallidin Snapin_Pallidin PF14712.6 90 pNZ_AAFL01000016_00027 - 498 0.021 15.2 2.0 2 2 0.69 1.4e+03 -0.2 0.1 36 69 430 465 427 482 0.67 Snapin/Pallidin DUF2408 PF10303.9 135 pNZ_AAFL01000016_00027 - 498 0.032 14.8 2.4 1 2 3e-05 0.06 13.9 0.3 39 120 312 394 253 396 0.74 Protein of unknown function (DUF2408) DUF2408 PF10303.9 135 pNZ_AAFL01000016_00027 - 498 0.032 14.8 2.4 2 2 0.56 1.1e+03 0.1 0.1 43 67 429 454 398 489 0.61 Protein of unknown function (DUF2408) Tup_N PF08581.10 77 pNZ_AAFL01000016_00027 - 498 0.065 13.5 2.3 1 4 2.7 5.3e+03 -2.2 0.0 45 61 158 174 157 177 0.82 Tup N-terminal Tup_N PF08581.10 77 pNZ_AAFL01000016_00027 - 498 0.065 13.5 2.3 2 4 4.2 8.4e+03 -2.8 0.0 19 48 244 273 229 276 0.72 Tup N-terminal Tup_N PF08581.10 77 pNZ_AAFL01000016_00027 - 498 0.065 13.5 2.3 3 4 0.0033 6.6 7.1 0.3 28 64 339 375 318 383 0.90 Tup N-terminal Tup_N PF08581.10 77 pNZ_AAFL01000016_00027 - 498 0.065 13.5 2.3 4 4 0.034 67 3.9 0.0 12 51 422 461 417 467 0.74 Tup N-terminal Mod_r PF07200.13 146 pNZ_AAFL01000016_00027 - 498 0.65 10.1 8.1 1 3 0.00031 0.62 10.2 0.4 54 101 334 383 293 387 0.76 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 pNZ_AAFL01000016_00027 - 498 0.65 10.1 8.1 2 3 0.094 1.9e+02 2.1 0.2 69 91 429 451 398 465 0.69 Modifier of rudimentary (Mod(r)) protein Mod_r PF07200.13 146 pNZ_AAFL01000016_00027 - 498 0.65 10.1 8.1 3 3 0.14 2.8e+02 1.5 1.6 18 57 451 490 427 498 0.33 Modifier of rudimentary (Mod(r)) protein SOAR PF16533.5 101 pNZ_AAFL01000016_00027 - 498 1.2 9.1 5.4 1 2 0.00078 1.5 8.8 0.1 50 97 326 373 300 376 0.81 STIM1 Orai1-activating region SOAR PF16533.5 101 pNZ_AAFL01000016_00027 - 498 1.2 9.1 5.4 2 2 0.35 6.9e+02 0.3 2.1 19 58 398 455 388 490 0.72 STIM1 Orai1-activating region DUF4407 PF14362.6 298 pNZ_AAFL01000016_00027 - 498 5.1 6.4 8.4 1 1 0.027 53 3.0 8.4 130 235 333 446 233 498 0.58 Domain of unknown function (DUF4407) DUF3847 PF12958.7 81 pNZ_AAFL01000016_00028 - 119 1.8e-31 108.1 8.2 1 1 5.7e-35 2.6e-31 107.6 8.2 1 81 6 89 6 89 0.98 Protein of unknown function (DUF3847) CENP-Q PF13094.6 168 pNZ_AAFL01000016_00028 - 119 0.034 14.3 11.9 1 1 9.8e-06 0.044 14.0 11.9 46 96 5 56 2 115 0.74 CENP-Q, a CENPA-CAD centromere complex subunit TPR_8 PF13181.6 34 pNZ_AAFL01000016_00028 - 119 0.078 13.2 0.1 1 1 4.4e-05 0.2 12.0 0.1 6 27 20 41 16 48 0.89 Tetratricopeptide repeat PHM7_cyt PF14703.6 176 pNZ_AAFL01000016_00028 - 119 4.2 7.6 7.2 1 1 0.0015 6.6 6.9 7.2 40 87 3 56 1 111 0.75 Cytosolic domain of 10TM putative phosphate transporter CPT PF07931.12 174 pNZ_AAFL01000016_00029 - 146 4e-06 26.8 0.0 1 1 1.4e-09 4.9e-06 26.5 0.0 59 172 20 137 11 139 0.78 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 130 pNZ_AAFL01000016_00029 - 146 9.4e-06 26.2 0.0 1 1 3.2e-09 1.2e-05 25.9 0.0 46 122 15 98 1 106 0.77 AAA domain AAA_33 PF13671.6 143 pNZ_AAFL01000016_00029 - 146 0.00063 19.9 0.0 1 1 2.2e-07 0.0008 19.6 0.0 55 136 30 109 9 112 0.82 AAA domain MKT1_N PF12247.8 90 pNZ_AAFL01000016_00029 - 146 0.027 14.8 0.0 1 1 1.7e-05 0.063 13.6 0.0 15 52 5 40 3 131 0.90 Temperature dependent protein affecting M2 dsRNA replication AAA_17 PF13207.6 136 pNZ_AAFL01000016_00029 - 146 0.14 12.6 0.0 1 1 5.4e-05 0.19 12.1 0.0 55 128 27 96 12 103 0.73 AAA domain Fructosamin_kin PF03881.14 288 pNZ_AAFL01000016_00030 - 89 0.097 11.9 0.0 1 1 5.4e-06 0.097 11.9 0.0 45 94 35 84 7 89 0.70 Fructosamine kinase Ank_3 PF13606.6 31 pNZ_AAFL01000019_00001 - 304 9.9e-11 40.9 0.3 1 4 0.015 53 4.9 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 pNZ_AAFL01000019_00001 - 304 9.9e-11 40.9 0.3 2 4 0.024 85 4.2 0.0 10 29 142 160 132 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pNZ_AAFL01000019_00001 - 304 9.9e-11 40.9 0.3 3 4 5.6e-07 0.002 18.5 0.0 2 30 168 195 167 196 0.95 Ankyrin repeat Ank_3 PF13606.6 31 pNZ_AAFL01000019_00001 - 304 9.9e-11 40.9 0.3 4 4 0.0018 6.3 7.7 0.0 1 30 206 235 206 236 0.92 Ankyrin repeat Ank_2 PF12796.7 83 pNZ_AAFL01000019_00001 - 304 1.5e-08 35.1 0.1 1 2 0.49 1.8e+03 -0.4 0.0 4 18 74 92 70 127 0.58 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pNZ_AAFL01000019_00001 - 304 1.5e-08 35.1 0.1 2 2 3.2e-11 1.1e-07 32.3 0.0 5 80 142 235 138 238 0.79 Ankyrin repeats (3 copies) Ank_4 PF13637.6 55 pNZ_AAFL01000019_00001 - 304 4.2e-06 27.2 0.1 1 3 0.81 2.9e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pNZ_AAFL01000019_00001 - 304 4.2e-06 27.2 0.1 2 3 4.4e-07 0.0016 19.0 0.0 13 55 146 188 134 188 0.83 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pNZ_AAFL01000019_00001 - 304 4.2e-06 27.2 0.1 3 3 0.018 63 4.3 0.0 3 28 209 235 189 245 0.86 Ankyrin repeats (many copies) Ank PF00023.30 32 pNZ_AAFL01000019_00001 - 304 0.00044 20.6 0.0 1 3 0.019 69 4.1 0.0 10 25 142 158 132 166 0.80 Ankyrin repeat Ank PF00023.30 32 pNZ_AAFL01000019_00001 - 304 0.00044 20.6 0.0 2 3 0.0042 15 6.2 0.0 2 31 168 198 167 199 0.87 Ankyrin repeat Ank PF00023.30 32 pNZ_AAFL01000019_00001 - 304 0.00044 20.6 0.0 3 3 0.0051 18 6.0 0.0 15 28 221 235 206 238 0.69 Ankyrin repeat Ank_5 PF13857.6 56 pNZ_AAFL01000019_00001 - 304 0.066 13.5 0.0 1 3 0.59 2.1e+03 -0.8 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pNZ_AAFL01000019_00001 - 304 0.066 13.5 0.0 2 3 0.025 89 3.6 0.0 23 54 141 173 139 175 0.77 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pNZ_AAFL01000019_00001 - 304 0.066 13.5 0.0 3 3 0.0063 22 5.5 0.0 15 43 179 207 173 210 0.81 Ankyrin repeats (many copies) Tox-REase-7 PF15649.6 86 pNZ_AAFL01000019_00002 - 573 2.8e-07 30.8 0.0 1 4 2 1.2e+04 -3.3 0.2 43 74 260 291 257 302 0.68 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pNZ_AAFL01000019_00002 - 573 2.8e-07 30.8 0.0 2 4 0.46 2.8e+03 -1.3 1.0 37 64 338 366 335 373 0.73 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pNZ_AAFL01000019_00002 - 573 2.8e-07 30.8 0.0 3 4 0.83 5e+03 -2.1 0.2 12 29 378 395 364 399 0.53 Restriction endonuclease fold toxin 7 Tox-REase-7 PF15649.6 86 pNZ_AAFL01000019_00002 - 573 2.8e-07 30.8 0.0 4 4 4.6e-11 2.8e-07 30.8 0.0 18 84 427 495 403 497 0.76 Restriction endonuclease fold toxin 7 VRR_NUC PF08774.11 108 pNZ_AAFL01000019_00002 - 573 0.027 14.6 0.0 1 1 1.6e-05 0.093 12.8 0.0 37 96 421 477 379 484 0.73 VRR-NUC domain DUF2239 PF09998.9 184 pNZ_AAFL01000019_00002 - 573 3.7 7.3 8.1 1 2 0.00027 1.6 8.5 0.6 23 71 46 92 38 103 0.74 Uncharacterized protein conserved in bacteria (DUF2239) DUF2239 PF09998.9 184 pNZ_AAFL01000019_00002 - 573 3.7 7.3 8.1 2 2 0.027 1.6e+02 2.0 1.7 5 66 260 342 257 381 0.64 Uncharacterized protein conserved in bacteria (DUF2239) Ank_3 PF13606.6 31 pNZ_AAFL01000019_00003 - 313 1.4e-10 40.5 0.2 1 4 0.015 55 4.8 0.0 8 26 73 93 66 97 0.84 Ankyrin repeat Ank_3 PF13606.6 31 pNZ_AAFL01000019_00003 - 313 1.4e-10 40.5 0.2 2 4 0.026 92 4.1 0.0 10 29 142 160 134 162 0.78 Ankyrin repeat Ank_3 PF13606.6 31 pNZ_AAFL01000019_00003 - 313 1.4e-10 40.5 0.2 3 4 8e-07 0.0029 18.0 0.0 2 30 168 195 167 196 0.95 Ankyrin repeat Ank_3 PF13606.6 31 pNZ_AAFL01000019_00003 - 313 1.4e-10 40.5 0.2 4 4 0.0017 6.1 7.7 0.0 1 30 206 235 206 236 0.91 Ankyrin repeat Ank_2 PF12796.7 83 pNZ_AAFL01000019_00003 - 313 8.2e-09 35.9 0.0 1 2 0.54 1.9e+03 -0.5 0.0 4 18 74 92 70 122 0.55 Ankyrin repeats (3 copies) Ank_2 PF12796.7 83 pNZ_AAFL01000019_00003 - 313 8.2e-09 35.9 0.0 2 2 1.5e-11 5.5e-08 33.3 0.0 5 80 142 235 138 238 0.79 Ankyrin repeats (3 copies) Ank_4 PF13637.6 55 pNZ_AAFL01000019_00003 - 313 1.1e-05 25.9 0.1 1 3 0.84 3e+03 -1.0 0.0 8 21 71 89 65 101 0.58 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pNZ_AAFL01000019_00003 - 313 1.1e-05 25.9 0.1 2 3 2.9e-07 0.001 19.6 0.0 13 55 146 188 133 188 0.82 Ankyrin repeats (many copies) Ank_4 PF13637.6 55 pNZ_AAFL01000019_00003 - 313 1.1e-05 25.9 0.1 3 3 0.071 2.6e+02 2.4 0.0 3 28 209 235 206 244 0.82 Ankyrin repeats (many copies) Ank PF00023.30 32 pNZ_AAFL01000019_00003 - 313 5.2e-05 23.5 0.0 1 3 0.022 78 4.0 0.0 10 25 142 158 130 165 0.82 Ankyrin repeat Ank PF00023.30 32 pNZ_AAFL01000019_00003 - 313 5.2e-05 23.5 0.0 2 3 0.00048 1.7 9.2 0.0 2 31 168 198 167 199 0.87 Ankyrin repeat Ank PF00023.30 32 pNZ_AAFL01000019_00003 - 313 5.2e-05 23.5 0.0 3 3 0.0049 18 6.0 0.0 15 28 221 235 206 238 0.69 Ankyrin repeat Ank_5 PF13857.6 56 pNZ_AAFL01000019_00003 - 313 0.028 14.8 0.1 1 4 0.61 2.2e+03 -0.9 0.0 26 42 79 96 73 98 0.79 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pNZ_AAFL01000019_00003 - 313 0.028 14.8 0.1 2 4 0.012 42 4.6 0.0 23 54 141 173 139 174 0.87 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pNZ_AAFL01000019_00003 - 313 0.028 14.8 0.1 3 4 0.00038 1.4 9.4 0.0 11 46 163 198 153 209 0.81 Ankyrin repeats (many copies) Ank_5 PF13857.6 56 pNZ_AAFL01000019_00003 - 313 0.028 14.8 0.1 4 4 2.5 9.1e+03 -2.8 0.0 34 53 226 243 222 244 0.56 Ankyrin repeats (many copies) Phage_GPD PF05954.11 304 pNZ_AAFL01000019_00004 - 882 1.1e-17 64.3 0.0 1 1 5e-21 1.8e-17 63.6 0.0 23 281 74 360 45 376 0.74 Phage late control gene D protein (GPD) DUF2345 PF10106.9 151 pNZ_AAFL01000019_00004 - 882 0.01 15.7 1.7 1 1 8.1e-06 0.029 14.2 1.7 28 132 775 874 772 878 0.84 Uncharacterized protein conserved in bacteria (DUF2345) Gp5_C PF06715.12 24 pNZ_AAFL01000019_00004 - 882 0.013 15.6 4.6 1 4 5.3e-05 0.19 11.9 0.1 3 24 657 678 655 686 0.67 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pNZ_AAFL01000019_00004 - 882 0.013 15.6 4.6 2 4 0.2 7.2e+02 0.7 0.0 13 24 731 742 730 742 0.89 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pNZ_AAFL01000019_00004 - 882 0.013 15.6 4.6 3 4 0.61 2.2e+03 -0.8 0.0 1 18 742 760 742 761 0.83 Gp5 C-terminal repeat (3 copies) Gp5_C PF06715.12 24 pNZ_AAFL01000019_00004 - 882 0.013 15.6 4.6 4 4 0.22 7.8e+02 0.6 0.1 2 23 752 773 751 774 0.81 Gp5 C-terminal repeat (3 copies) DUF3540 PF12059.8 199 pNZ_AAFL01000019_00004 - 882 0.1 12.4 0.8 1 2 0.25 9.1e+02 -0.5 0.0 31 45 534 548 532 555 0.80 Protein of unknown function (DUF3540) DUF3540 PF12059.8 199 pNZ_AAFL01000019_00004 - 882 0.1 12.4 0.8 2 2 0.00012 0.45 10.3 0.2 60 128 783 850 777 861 0.85 Protein of unknown function (DUF3540) TCL1_MTCP1 PF01840.17 116 pNZ_AAFL01000019_00004 - 882 0.11 12.2 0.0 1 2 0.053 1.9e+02 1.7 0.0 24 60 222 258 212 311 0.64 TCL1/MTCP1 family TCL1_MTCP1 PF01840.17 116 pNZ_AAFL01000019_00004 - 882 0.11 12.2 0.0 2 2 0.00085 3 7.5 0.0 19 52 461 494 452 517 0.80 TCL1/MTCP1 family T6SS_TssG PF06996.11 299 pNZ_AAFL01000019_00005 - 302 1.9e-47 161.9 0.0 1 1 1.2e-51 2.2e-47 161.8 0.0 3 299 5 287 3 287 0.94 Type VI secretion, TssG T6SS_TssF PF05947.12 603 pNZ_AAFL01000019_00006 - 573 2.3e-110 369.9 0.0 1 1 1.5e-114 2.6e-110 369.8 0.0 7 602 6 569 1 570 0.91 Type VI secretion system, TssF GPW_gp25 PF04965.14 95 pNZ_AAFL01000019_00007 - 130 1.2e-09 37.8 0.0 1 1 2.6e-13 1.5e-09 37.5 0.0 5 90 26 107 22 111 0.90 Gene 25-like lysozyme Dynactin_p22 PF07426.11 167 pNZ_AAFL01000019_00007 - 130 0.0076 16.1 0.3 1 1 1.6e-06 0.0097 15.8 0.3 93 159 20 87 6 92 0.89 Dynactin subunit p22 Dot_icm_IcmQ PF09475.10 179 pNZ_AAFL01000019_00007 - 130 0.051 13.0 0.1 1 2 2.1e-05 0.12 11.8 0.1 82 121 5 46 1 64 0.83 Dot/Icm secretion system protein (dot_icm_IcmQ) Dot_icm_IcmQ PF09475.10 179 pNZ_AAFL01000019_00007 - 130 0.051 13.0 0.1 2 2 0.21 1.3e+03 -1.3 0.0 23 39 67 83 56 91 0.63 Dot/Icm secretion system protein (dot_icm_IcmQ) VipB PF05943.12 422 pNZ_AAFL01000019_00008 - 484 1e-169 564.9 0.0 1 1 1.3e-173 1.2e-169 564.6 0.0 1 422 58 482 58 482 0.99 Type VI secretion protein, EvpB/VC_A0108, tail sheath PBS_linker_poly PF00427.21 126 pNZ_AAFL01000019_00008 - 484 0.096 12.7 0.8 1 3 0.0048 43 4.2 0.1 22 57 14 49 6 86 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pNZ_AAFL01000019_00008 - 484 0.096 12.7 0.8 2 3 0.002 18 5.4 0.0 58 88 216 246 201 267 0.82 Phycobilisome Linker polypeptide PBS_linker_poly PF00427.21 126 pNZ_AAFL01000019_00008 - 484 0.096 12.7 0.8 3 3 0.4 3.6e+03 -2.0 0.0 84 110 398 425 391 428 0.55 Phycobilisome Linker polypeptide T6SS_VipA PF05591.12 155 pNZ_AAFL01000019_00009 - 161 1.2e-51 174.6 3.8 1 1 1.5e-55 1.3e-51 174.4 3.8 3 154 6 154 4 155 0.98 Type VI secretion system, VipA, VC_A0107 or Hcp2 Chitin_synth_2 PF03142.15 527 pNZ_AAFL01000019_00009 - 161 0.082 11.5 0.0 1 1 1.1e-05 0.099 11.2 0.0 171 227 55 111 40 127 0.90 Chitin synthase T6SS_VasJ PF16989.5 255 pNZ_AAFL01000019_00010 - 415 1.2e-12 47.9 0.0 1 1 3.9e-16 1.7e-12 47.3 0.0 3 153 176 323 174 408 0.84 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ ImpA_N PF06812.12 119 pNZ_AAFL01000019_00010 - 415 0.00014 22.0 0.2 1 2 1.8e-07 0.0008 19.5 0.1 13 89 10 83 6 93 0.85 ImpA, N-terminal, type VI secretion system ImpA_N PF06812.12 119 pNZ_AAFL01000019_00010 - 415 0.00014 22.0 0.2 2 2 0.31 1.4e+03 -0.6 0.0 47 71 185 209 162 212 0.83 ImpA, N-terminal, type VI secretion system PX PF00787.24 113 pNZ_AAFL01000019_00010 - 415 0.074 13.0 14.5 1 3 0.00025 1.1 9.2 2.4 31 111 33 130 20 131 0.67 PX domain PX PF00787.24 113 pNZ_AAFL01000019_00010 - 415 0.074 13.0 14.5 2 3 0.00084 3.8 7.5 0.2 16 112 155 275 132 276 0.68 PX domain PX PF00787.24 113 pNZ_AAFL01000019_00010 - 415 0.074 13.0 14.5 3 3 0.052 2.3e+02 1.8 0.7 22 97 316 396 296 404 0.70 PX domain TetR_C_24 PF17932.1 114 pNZ_AAFL01000019_00010 - 415 0.19 12.0 0.0 1 1 8.8e-05 0.4 11.0 0.0 20 68 71 119 62 132 0.87 Tetracyclin repressor-like, C-terminal domain T6SS-SciN PF12790.7 120 pNZ_AAFL01000019_00011 - 148 1.9e-14 53.4 0.2 1 1 1.2e-18 2.1e-14 53.3 0.2 3 108 22 127 20 142 0.89 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 T6SS_VasE PF05936.12 428 pNZ_AAFL01000019_00012 - 465 1.3e-112 376.6 0.0 1 1 8.6e-117 1.5e-112 376.4 0.0 1 428 19 463 19 463 0.93 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DotU PF09850.9 205 pNZ_AAFL01000019_00013 - 257 3.6e-35 121.5 0.0 1 1 2.3e-39 4.2e-35 121.4 0.0 2 203 27 234 26 236 0.86 Type VI secretion system protein DotU T6SS_HCP PF05638.12 129 pNZ_AAFL01000019_00014 - 171 5.7e-30 104.4 0.1 1 1 3.6e-34 6.5e-30 104.2 0.1 1 129 6 155 6 155 0.89 Type VI secretion system effector, Hcp ImcF-related_N PF14331.6 259 pNZ_AAFL01000019_00015 - 1175 6.2e-41 140.5 0.0 1 1 4.7e-44 1.1e-40 139.7 0.0 5